HHsearch alignment for GI: 254780619 and conserved domain: cd00046

>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

Probab=99.43  E-value=2.1e-12  Score=113.92  Aligned_cols=132  Identities=32%  Similarity=0.460  Sum_probs=100.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHCCCC--CEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             1998447531579999999999851--468479971521001344555430389--768996235572356678999971
Q gi|254780619|r  220 VSLISGVTGSGKTEVYLEIVAAVLH--LGKQVLILLPEISLTSAILERFQKRFG--VKPAEWHSSLSTSMREKIWRQVAR  295 (731)
Q Consensus       220 ~~LL~GvTGSGKTEVYl~li~~~L~--~GkqvLiLvPEI~Lt~Q~~~rl~~rF~--~~v~v~HS~ls~~eR~~~w~~i~~  295 (731)
T Consensus         2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   77 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLS   77 (144)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH----HHHC
T ss_conf             999988997179999999999999756897699974679999999999999748871799996136367789----8745


Q ss_pred             CCCEEEEECCHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCC
Q ss_conf             99739994001211-------001000136774055321000024432248999997511032100002454
Q gi|254780619|r  296 GAISVIVGVRSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATP  360 (731)
Q Consensus       296 G~~~IVIGtRSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATP  360 (731)
T Consensus        78 ~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~-----~~~~~~~~~~~~~~~~~~~~l~lSATp  144 (144)
T cd00046          78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN-----QGFGLLGLKILLKLPKDRQVLLLSATP  144 (144)
T ss_pred             CCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHC-----CCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             8984998288999999973876555100999988887643-----796999999999679999489982899