HHsearch alignment for GI: 254780619 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=98.60 E-value=1.9e-07 Score=76.08 Aligned_cols=116 Identities=23% Similarity=0.377 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCE
Q ss_conf 89999998862265517997422200000023565434310146520121135783200002102446555666787411
Q gi|254780619|r 408 PEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGK 487 (731)
Q Consensus 408 ~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~ 487 (731)
T Consensus 15 ~~l~~~i~~~~~~~~kviIF~~~~~~~----------------------------------------------------- 41 (131)
T cd00079 15 EALLELLKEHLKKGGKVLIFCPSKKML----------------------------------------------------- 41 (131)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHH-----------------------------------------------------
T ss_conf 999999999997899099997889999-----------------------------------------------------
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00135428998888520485200010232113586789999986212576579870443023113452012330003443
Q gi|254780619|r 488 MIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGL 567 (731)
Q Consensus 488 l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l 567 (731)
T Consensus 42 --------~~l~~~L~~--~~~~~~~~~~~~~--~~~R~~~~~~F~~~~~~ilv~t~~~~~Gldl~~~~~vI~~~~~--- 106 (131)
T cd00079 42 --------DELAELLRK--PGIKVAALHGDGS--QEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLP--- 106 (131)
T ss_pred --------HHHHHHHHH--CCCCEEEEECCCC--HHHHHHHHHHHHHHCEEEEEEEECCEECCCCCCCCEEEEECCC---
T ss_conf --------999999955--8998999989999--9999999999775401048875112003661028799997899---
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 102455789999987543110256678868999
Q gi|254780619|r 568 TNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600 (731)
Q Consensus 568 ~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~i 600 (731)
T Consensus 107 ----~-----s~~~~~Q~~GR~~R~gq~~~~~~ 130 (131)
T cd00079 107 ----W-----SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred ----C-----CHHHHHHHHHCCCCCCCCEEEEE
T ss_conf ----6-----98999989721670899637997