HHsearch alignment for GI: 254780619 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=97.16 E-value=0.0099 Score=39.99 Aligned_cols=92 Identities=25% Similarity=0.383 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 31579999999999851468479971521001344555430389768996235572356678999971997399940012
Q gi|254780619|r 228 GSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSA 307 (731)
Q Consensus 228 GSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSA 307 (731)
T Consensus 10 ~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~~~ 88 (131)
T cd00079 10 EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEECC
T ss_conf 66999999999999997899099997889999999999955-89989999899999999999999775401048875112
Q ss_pred HH-HHHCCCEEEEE
Q ss_conf 11-00100013677
Q gi|254780619|r 308 LF-LPFKKLGLIVI 320 (731)
Q Consensus 308 if-~P~~nLglIIv 320 (731)
T Consensus 89 ~~Gldl~~~~~vI~ 102 (131)
T cd00079 89 ARGIDLPNVSVVIN 102 (131)
T ss_pred EECCCCCCCCEEEE
T ss_conf 00366102879999