HHsearch alignment for GI: 254780619 and conserved domain: cd00079

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=97.16  E-value=0.0099  Score=39.99  Aligned_cols=92  Identities=25%  Similarity=0.383  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             31579999999999851468479971521001344555430389768996235572356678999971997399940012
Q gi|254780619|r  228 GSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSA  307 (731)
Q Consensus       228 GSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSA  307 (731)
T Consensus        10 ~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~~~   88 (131)
T cd00079          10 EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI   88 (131)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEECC
T ss_conf             66999999999999997899099997889999999999955-89989999899999999999999775401048875112


Q ss_pred             HH-HHHCCCEEEEE
Q ss_conf             11-00100013677
Q gi|254780619|r  308 LF-LPFKKLGLIVI  320 (731)
Q Consensus       308 if-~P~~nLglIIv  320 (731)
T Consensus        89 ~~Gldl~~~~~vI~  102 (131)
T cd00079          89 ARGIDLPNVSVVIN  102 (131)
T ss_pred             EECCCCCCCCEEEE
T ss_conf             00366102879999