HHsearch alignment for GI: 254780619 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.12  E-value=4e-09  Score=88.89  Aligned_cols=174  Identities=24%  Similarity=0.257  Sum_probs=117.3

Q ss_pred             HCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             09998999752455722344554102356654344666688378999999987520489619984475315799999999
Q gi|254780619|r  160 SQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIV  239 (731)
Q Consensus       160 ~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li  239 (731)
T Consensus         4 l~L~~~ll~~l~~~g~~---------------------~pt~IQ~~~ip~il~g-----~dvi~~a~TGSGKTlay~lpi   57 (203)
T cd00268           4 LGLSPELLRGIYALGFE---------------------KPTPIQARAIPPLLSG-----RDVIGQAQTGSGKTAAFLIPI   57 (203)
T ss_pred             CCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCCCHHHHHHHH
T ss_conf             96599999999987999---------------------9999999999999779-----988997579972228888699


Q ss_pred             HHHH-----HCCCCEEEEECCCHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH--
Q ss_conf             9985-----14684799715210013445554303---8976899623557235667899997199739994001211--
Q gi|254780619|r  240 AAVL-----HLGKQVLILLPEISLTSAILERFQKR---FGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF--  309 (731)
Q Consensus       240 ~~~L-----~~GkqvLiLvPEI~Lt~Q~~~rl~~r---F~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif--  309 (731)
T Consensus        58 l~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IlI~TPgrl~~~  133 (203)
T cd00268          58 LEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQI---RKLKR-GPHIVVATPGRLLDL  133 (203)
T ss_pred             HHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH---HHHHC-CCEEEEECCHHHHHH
T ss_conf             99986166768966999968799999999999985057983899983898879999---99853-875999681899999


Q ss_pred             -----HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHH
Q ss_conf             -----00100013677405532100002443224899999751103210000245432467753
Q gi|254780619|r  310 -----LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNG  368 (731)
Q Consensus       310 -----~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~  368 (731)
T Consensus       134 l~~~~~~l~~l~~lVlDEAD~l-l--~~gf~~~i~~I--~~~l~~~~Q~~lfSAT~~~~v~~l~  192 (203)
T cd00268         134 LERGKLDLSKVKYLVLDEADRM-L--DMGFEDQIREI--LKLLPKDRQTLLFSATMPKEVRDLA  192 (203)
T ss_pred             HHCCCCCCCCCCEEEEECHHHH-H--HCCCHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHH
T ss_conf             9848865132248999858888-7--47769999999--9858967779999804998899999