HHsearch alignment for GI: 254780619 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.12 E-value=4e-09 Score=88.89 Aligned_cols=174 Identities=24% Similarity=0.257 Sum_probs=117.3
Q ss_pred HCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 09998999752455722344554102356654344666688378999999987520489619984475315799999999
Q gi|254780619|r 160 SQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIV 239 (731)
Q Consensus 160 ~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li 239 (731)
T Consensus 4 l~L~~~ll~~l~~~g~~---------------------~pt~IQ~~~ip~il~g-----~dvi~~a~TGSGKTlay~lpi 57 (203)
T cd00268 4 LGLSPELLRGIYALGFE---------------------KPTPIQARAIPPLLSG-----RDVIGQAQTGSGKTAAFLIPI 57 (203)
T ss_pred CCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCCCHHHHHHHH
T ss_conf 96599999999987999---------------------9999999999999779-----988997579972228888699
Q ss_pred HHHH-----HCCCCEEEEECCCHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH--
Q ss_conf 9985-----14684799715210013445554303---8976899623557235667899997199739994001211--
Q gi|254780619|r 240 AAVL-----HLGKQVLILLPEISLTSAILERFQKR---FGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF-- 309 (731)
Q Consensus 240 ~~~L-----~~GkqvLiLvPEI~Lt~Q~~~rl~~r---F~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-- 309 (731)
T Consensus 58 l~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IlI~TPgrl~~~ 133 (203)
T cd00268 58 LEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQI---RKLKR-GPHIVVATPGRLLDL 133 (203)
T ss_pred HHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH---HHHHC-CCEEEEECCHHHHHH
T ss_conf 99986166768966999968799999999999985057983899983898879999---99853-875999681899999
Q ss_pred -----HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHH
Q ss_conf -----00100013677405532100002443224899999751103210000245432467753
Q gi|254780619|r 310 -----LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNG 368 (731)
Q Consensus 310 -----~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~ 368 (731)
T Consensus 134 l~~~~~~l~~l~~lVlDEAD~l-l--~~gf~~~i~~I--~~~l~~~~Q~~lfSAT~~~~v~~l~ 192 (203)
T cd00268 134 LERGKLDLSKVKYLVLDEADRM-L--DMGFEDQIREI--LKLLPKDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred HHCCCCCCCCCCEEEEECHHHH-H--HCCCHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHH
T ss_conf 9848865132248999858888-7--47769999999--9858967779999804998899999