HHsearch alignment for GI: 254780619 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.01 E-value=0.11 Score=31.98 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=70.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHCCC-CCEEEEEECC-CCCHHHHHHHHHHH-
Q ss_conf 619984475315799999999998-5146847997152100134455543038-9768996235-57235667899997-
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAV-LHLGKQVLILLPEISLTSAILERFQKRF-GVKPAEWHSS-LSTSMREKIWRQVA- 294 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~-L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v~v~HS~-ls~~eR~~~w~~i~- 294 (731)
T Consensus 14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~-~~~~~~R~~s~~~~i~~~~i~~~~~~~~~~-~~~~~~~~ 91 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS-KEQLLQRLLASESGISLSKLRTGSLSDEDW-ERLAEAIG 91 (242)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHHCCCHHHHHCCCCCHHHH-HHHHHHHH
T ss_conf 1899996899999999999999999977995999933353-889999999998297745530265227999-99999999
Q ss_pred -CCCCEEEE-ECCH----HH------HHHHCCCEEEEEEECC--CCCCHHCCCCCCC-----HHHHHHHHHHHCCCCEEC
Q ss_conf -19973999-4001----21------1001000136774055--3210000244322-----489999975110321000
Q gi|254780619|r 295 -RGAISVIV-GVRS----AL------FLPFKKLGLIVIDEEH--DISYKQEEGILYN-----ARDMSIVRGKIESFPVVL 355 (731)
Q Consensus 295 -~G~~~IVI-GtRS----Ai------f~P~~nLglIIvDEEH--d~sykq~~~pry~-----aRdvA~~Ra~~~~~~lil 355 (731)
T Consensus 92 ~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~~~~~--~~~~~~~~i~~i~~~L-k~lA~e~~v~Vi~ 168 (242)
T cd00984 92 ELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KKGNRQQEVAEISRSL-KLLAKELNVPVIA 168 (242)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCC--CCCCHHHHHHHHHHHH-HHHHHHHCCEEEE
T ss_conf 861698899669999999999999999883699899982698546777--6657999999999999-9999997993999
Q ss_pred CCCC
Q ss_conf 0245
Q gi|254780619|r 356 VSAT 359 (731)
Q Consensus 356 gSAT 359 (731)
T Consensus 169 ~sQl 172 (242)
T cd00984 169 LSQL 172 (242)
T ss_pred EECC
T ss_conf 8467