HHsearch alignment for GI: 254780619 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.48 E-value=0.19 Score=30.25 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=32.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHH------CCCCEEEEECCCHHHHH
Q ss_conf 61998447531579999999999851------46847997152100134
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLH------LGKQVLILLPEISLTSA 261 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~------~GkqvLiLvPEI~Lt~Q 261 (731)
T Consensus 20 ~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~ 68 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE 68 (235)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 7999999999849999999999984247536789629999536775889