HHsearch alignment for GI: 254780619 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.02 E-value=0.078 Score=33.12 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=44.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 199844753157999999999985146847997152100134455543038976899623557235667899997
Q gi|254780619|r 220 VSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVA 294 (731)
Q Consensus 220 ~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~ 294 (731)
T Consensus 44 H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe----~~~~fy~~~~d--~ilnP~d~rs~~wnp~~ei~ 112 (410)
T cd01127 44 HTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGG----FVSKFYRPATD--IILNPFDARCAGWSLFNEIR 112 (410)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH----HHHHHHCCCCC--EEECCCCCCCCCCCHHHHHC
T ss_conf 47998899998899999999999986990999958854----99997544776--68676643577777578846