HHsearch alignment for GI: 254780619 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.48 E-value=0.15 Score=31.04 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=36.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCC------CCEEEEECCCHHHHHHHHHH
Q ss_conf 6199844753157999999999985146------84799715210013445554
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLG------KQVLILLPEISLTSAILERF 266 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~G------kqvLiLvPEI~Lt~Q~~~rl 266 (731)
T Consensus 20 ~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i 73 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQL 73 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 399999999998999999999998542211699961999955775319999999