HHsearch alignment for GI: 254780619 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.83  E-value=0.24  Score=29.39  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=34.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             61998447531579999999999851468479971521
Q gi|254780619|r  219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEI  256 (731)
Q Consensus       219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI  256 (731)
T Consensus        20 ~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~   57 (218)
T cd01394          20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             79999899998499999999999863698699996655