HHsearch alignment for GI: 254780619 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.83 E-value=0.24 Score=29.39 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=34.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 61998447531579999999999851468479971521
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEI 256 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI 256 (731)
T Consensus 20 ~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~ 57 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 79999899998499999999999863698699996655