HHsearch alignment for GI: 254780619 and conserved domain: cd03223

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.80  E-value=0.22  Score=29.69  Aligned_cols=119  Identities=18%  Similarity=0.265  Sum_probs=58.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEC---CCHHHHHHHHHHHCCCCCEE-EEEECCCCCHHHHHHHHHHH
Q ss_conf             619984475315799999999998514684799715---21001344555430389768-99623557235667899997
Q gi|254780619|r  219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLP---EISLTSAILERFQKRFGVKP-AEWHSSLSTSMREKIWRQVA  294 (731)
Q Consensus       219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvP---EI~Lt~Q~~~rl~~rF~~~v-~v~HS~ls~~eR~~~w~~i~  294 (731)
T Consensus        28 e~v~i~G~sGsGKSTL-l~~l~Gl~~~~~G~i~-~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSGGqkQRvalA--  103 (166)
T cd03223          28 DRLLITGPSGTGKSSL-FRALAGLWPWGSGRIG-MPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA--  103 (166)
T ss_pred             CEEEEECCCCCCHHHH-HHHHCCCCCCCCCEEE-ECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH--
T ss_conf             9999995899988999-9998698769986799-76998799985646658875999963615467899999999999--


Q ss_pred             CCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCH
Q ss_conf             19973999400121100100013677405532100002443224899999751103210000245432
Q gi|254780619|r  295 RGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSI  362 (731)
Q Consensus       295 ~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSl  362 (731)
T Consensus       104 ----------R-al---~~~p~iliLDEpT-s~L---D-~-~~~~~l~~~l-~~~~~Tvi~VtH~~~~  150 (166)
T cd03223         104 ----------R-LL---LHKPKFVFLDEAT-SAL---D-E-ESEDRLYQLL-KELGITVISVGHRPSL  150 (166)
T ss_pred             ----------H-HH---HCCCCEEEECCCC-CCC---C-H-HHHHHHHHHH-HHCCCEEEEEECCHHH
T ss_conf             ----------9-99---6499999975853-328---9-9-9999999999-9779989999434699