HHsearch alignment for GI: 254780619 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.80 E-value=0.22 Score=29.69 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=58.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEC---CCHHHHHHHHHHHCCCCCEE-EEEECCCCCHHHHHHHHHHH
Q ss_conf 619984475315799999999998514684799715---21001344555430389768-99623557235667899997
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLP---EISLTSAILERFQKRFGVKP-AEWHSSLSTSMREKIWRQVA 294 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvP---EI~Lt~Q~~~rl~~rF~~~v-~v~HS~ls~~eR~~~w~~i~ 294 (731)
T Consensus 28 e~v~i~G~sGsGKSTL-l~~l~Gl~~~~~G~i~-~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSGGqkQRvalA-- 103 (166)
T cd03223 28 DRLLITGPSGTGKSSL-FRALAGLWPWGSGRIG-MPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA-- 103 (166)
T ss_pred CEEEEECCCCCCHHHH-HHHHCCCCCCCCCEEE-ECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH--
T ss_conf 9999995899988999-9998698769986799-76998799985646658875999963615467899999999999--
Q ss_pred CCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCH
Q ss_conf 19973999400121100100013677405532100002443224899999751103210000245432
Q gi|254780619|r 295 RGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSI 362 (731)
Q Consensus 295 ~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSl 362 (731)
T Consensus 104 ----------R-al---~~~p~iliLDEpT-s~L---D-~-~~~~~l~~~l-~~~~~Tvi~VtH~~~~ 150 (166)
T cd03223 104 ----------R-LL---LHKPKFVFLDEAT-SAL---D-E-ESEDRLYQLL-KELGITVISVGHRPSL 150 (166)
T ss_pred ----------H-HH---HCCCCEEEECCCC-CCC---C-H-HHHHHHHHHH-HHCCCEEEEEECCHHH
T ss_conf ----------9-99---6499999975853-328---9-9-9999999999-9779989999434699