HHsearch alignment for GI: 254780619 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=97.59 E-value=0.0056 Score=41.88 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHCCCCC-EEEEEE
Q ss_conf 89999999875204896199844753157999999999985146---84799715210013445554303897-689962
Q gi|254780619|r 203 QQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG---KQVLILLPEISLTSAILERFQKRFGV-KPAEWH 278 (731)
Q Consensus 203 Q~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G---kqvLiLvPEI~Lt~Q~~~rl~~rF~~-~v~v~H 278 (731)
T Consensus 2 Q~~gv~wl~~~~~~~~-ggiLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~-sl~~~W~~Ei~~~~~~~~~~~~~ 79 (295)
T pfam00176 2 QLEGVNWLISLYNNGL-GGILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPL-STLDNWLNEFEKWAPDLNIVVYY 79 (295)
T ss_pred HHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7889999999872799-989722787579999999999999838899988999757-88876788999867997079998
Q ss_pred CCCCCHHHHHHHHH-HHCCCCEEEEECCHHHH---HHHCC--CEEEEEEECCC
Q ss_conf 35572356678999-97199739994001211---00100--01367740553
Q gi|254780619|r 279 SSLSTSMREKIWRQ-VARGAISVIVGVRSALF---LPFKK--LGLIVIDEEHD 325 (731)
Q Consensus 279 S~ls~~eR~~~w~~-i~~G~~~IVIGtRSAif---~P~~n--LglIIvDEEHd 325 (731)
T Consensus 80 ~~~--~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l~~~~w~~vI~DEaH~ 130 (295)
T pfam00176 80 GDG--DSRSELLRNVLRTGKFDVLITSYEYIRRDKDELHKANWRYVILDEGHR 130 (295)
T ss_pred ECH--HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 470--768999886774168859993099999759998408765899876201