HHsearch alignment for GI: 254780619 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.54 E-value=1.5e-13 Score=122.80 Aligned_cols=151 Identities=26% Similarity=0.304 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHH---CCCCEEEEECCCHHHHHHHHHHHCCCCC---E
Q ss_conf 837899999998752048961998447531579999999999851---4684799715210013445554303897---6
Q gi|254780619|r 200 DKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLH---LGKQVLILLPEISLTSAILERFQKRFGV---K 273 (731)
Q Consensus 200 t~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~---~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~---~ 273 (731)
T Consensus 1 ~~~Q~~~i~~~~~-----g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~ 75 (167)
T pfam00270 1 TPIQAEAIPAILE-----GKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLK 75 (167)
T ss_pred CHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9459999999976-----99789988999758999999999998747789879999060888889998864321026764
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHH
Q ss_conf 899623557235667899997199739994001211-------0010001367740553210000244322489999975
Q gi|254780619|r 274 PAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRG 346 (731)
Q Consensus 274 v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra 346 (731)
T Consensus 76 ~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~---~~~~g~~~~~i--l~~ 146 (167)
T pfam00270 76 VALLYGGDSPKEQLRKLK----KGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLL---DQGFGDDLEEI--LRR 146 (167)
T ss_pred EEEECCCCCHHHHHHHHC----CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHH---CCCHHHHHHHH--HHH
T ss_conf 046417861788987640----577079947899999998033121100389988088673---35829999999--985
Q ss_pred HHCCCCEECCCCCCCHHHH
Q ss_conf 1103210000245432467
Q gi|254780619|r 347 KIESFPVVLVSATPSIESR 365 (731)
Q Consensus 347 ~~~~~~lilgSATPSles~ 365 (731)
T Consensus 147 l~~~~q~v~~SAT~~-~~~ 164 (167)
T pfam00270 147 LPPKRQILLLSATLP-RNV 164 (167)
T ss_pred CCCCCCEEEEECCCC-HHH
T ss_conf 799997899972699-778