HHsearch alignment for GI: 254780619 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=93.55 E-value=0.2 Score=30.00 Aligned_cols=49 Identities=27% Similarity=0.290 Sum_probs=36.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 961998447531579999999999-85146847997152100134455543
Q gi|254780619|r 218 FAVSLISGVTGSGKTEVYLEIVAA-VLHLGKQVLILLPEISLTSAILERFQ 267 (731)
Q Consensus 218 f~~~LL~GvTGSGKTEVYl~li~~-~L~~GkqvLiLvPEI~Lt~Q~~~rl~ 267 (731)
T Consensus 19 gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~-~~~l~~~~~ 68 (231)
T pfam06745 19 GRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP-PEDLRENAK 68 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHH
T ss_conf 96999985897259999999999999865896899981379-999999999