HHsearch alignment for GI: 254780619 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=98.10 E-value=2.1e-05 Score=60.50 Aligned_cols=123 Identities=23% Similarity=0.319 Sum_probs=82.3
Q ss_pred EEEECCCCHHHH-HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCE
Q ss_conf 998447531579-9999999998514684799715210013445554303897689962355723566789999719973
Q gi|254780619|r 221 SLISGVTGSGKT-EVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAIS 299 (731)
Q Consensus 221 ~LL~GvTGSGKT-EVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~ 299 (731)
T Consensus 5 t~ld~HPGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~~Em~eAL~g----~~vr~~t~a~~~~~--------~~~~i 72 (146)
T pfam07652 5 TVLDLHPGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVLAEMEEALRG----LPIRYHTPAVSSEH--------TGREI 72 (146)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC----CCCEEECHHHHCCC--------CCCCE
T ss_conf 7985389999702248999999997286189977279999999999758----99467523431366--------88841
Q ss_pred EEEECCHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCC
Q ss_conf 9994001211-------0010001367740553210000244322489999975110321000024543
Q gi|254780619|r 300 VIVGVRSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPS 361 (731)
Q Consensus 300 IVIGtRSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPS 361 (731)
T Consensus 73 vdvmCH-AT~t~r~l~~~~~~ny~viIMDE~H~~-----DP~SIAarG~~~~~~~~g~~a~i~mTATPP 135 (146)
T pfam07652 73 VDVMCH-ATFTQRLLSPVRVPNYEVIIMDEAHFT-----DPASIAARGYISTLVELGEAAAIFMTATPP 135 (146)
T ss_pred EEEECH-HHHHHHHHCCCCCCCEEEEEEECCCCC-----CHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 889715-988889736888564479998512238-----989999889999885438657999956899