HHsearch alignment for GI: 254780619 and conserved domain: smart00490
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.17 E-value=1.3e-06 Score=69.69 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=65.8
Q ss_pred HHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99888852048520001023211358678999998621257657987044302311345201233000344310245578
Q gi|254780619|r 496 ERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSS 575 (731)
Q Consensus 496 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~ 575 (731)
T Consensus 1 ~~l~~~l~~~--g~~~~~i~g~~~--~~~R~~~~~~f~~~~~~ilv~t~~~~~Gidl~~~~~vI~~~~~----------- 65 (82)
T smart00490 1 EELAELLKEL--GIKVARLHGGLS--QEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLP----------- 65 (82)
T ss_pred CHHHHHHHHC--CCCEEEEECCCC--HHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEEEEECCC-----------
T ss_conf 9789999888--991999989699--9999999999987997199995024211489889999997899-----------
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999875431102566
Q gi|254780619|r 576 ERTFQLLSQVTGRAGRF 592 (731)
Q Consensus 576 E~~~qll~qv~gRagr~ 592 (731)
T Consensus 66 -~~~~~~~Q~~GR~~R~ 81 (82)
T smart00490 66 -WSPASYIQRIGRAGRA 81 (82)
T ss_pred -CCHHHHHHHHCCCCCC
T ss_conf -6989999997258789