RPSBLAST alignment for GI: 254780619 and conserved domain: TIGR00595

>gnl|CDD|161946 TIGR00595, priA, primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 505

 Score =  546 bits (1410), Expect = e-156
 Identities = 226/509 (44%), Positives = 323/509 (63%), Gaps = 8/509 (1%)

Query: 222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSL 281
           L+ GVTGSGKTEVYL+ +  VL LGK VL+L+PEI+LT  +++RF+ RFG + A  HS L
Sbjct: 1   LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGL 60

Query: 282 STSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDM 341
           S S + + WR+V  G I V++G RSALFLPFK LGLI++DEEHD SYKQEEG  Y+ARD+
Sbjct: 61  SDSEKLQAWRKVKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV 120

Query: 342 SIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIA 401
           ++ R K  + PVVL SATPS+ES  N   + Y  + L+ R      P +++IDMR +   
Sbjct: 121 AVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKE--P 178

Query: 402 QGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSK 461
           +   LSPE+I  I  TLA  EQ++LFLNRRGY+   LC+ CG  L C +C   L  H+ +
Sbjct: 179 RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKE 238

Query: 462 KKLYCHQCGHSAIYSQSCVVCGSSGKMIA-CGFGIERIAEEVCEYFPLARISILSSDLEG 520
            KL CH CG+     ++C  CGS  + +   G+G E++ EE+ + FP ARI+ + SD   
Sbjct: 239 GKLRCHYCGYQEPIPKTCPQCGS--EDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTS 296

Query: 521 GGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQ 580
             G  +  L+  A G+ DI+IGTQ++AKGH+FP ++LVGV+D D GL + D R++ER FQ
Sbjct: 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQ 356

Query: 581 LLSQVTGRAGRFGLKSLGLIQAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRL 640
           LL+QV GRAGR       +IQ Y P HP +QA ++GD ++FYE E+  R ++N PPF RL
Sbjct: 357 LLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPFTRL 416

Query: 641 AAVIISGTKYQEVENYAYNLKEHAPRS--SDIVVFGPAESPLFMVRGRYRFRLLIHGKRN 698
             +I  G   ++ +  A    E   ++    + V GP+ +P+  + GRYR+++L+  K  
Sbjct: 417 IRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEVLGPSPAPIAKIAGRYRYQILLKSKSF 476

Query: 699 SNLQGFFSQMYDNTIKRSNALRVQFDIDP 727
             LQ   ++     I  S+++  + D+DP
Sbjct: 477 LVLQKLVNKTLLKEIP-SSSVYCEVDVDP 504