BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780619|ref|YP_003065032.1| primosome assembly protein
PriA [Candidatus Liberibacter asiaticus str. psy62]
(731 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 1496 bits (3874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/731 (100%), Positives = 731/731 (100%)
Query: 1 MASSGSSVEGVVCSRVIILLLQAVSGPYIYSVPSAMKVELGSIVRVPLRSRTVLGIVWYN 60
MASSGSSVEGVVCSRVIILLLQAVSGPYIYSVPSAMKVELGSIVRVPLRSRTVLGIVWYN
Sbjct: 1 MASSGSSVEGVVCSRVIILLLQAVSGPYIYSVPSAMKVELGSIVRVPLRSRTVLGIVWYN 60
Query: 61 SEEKYKIDSLKLRPIEYVFDCPPLSRQMCEFVKWVADYTFSPMGLVARMVVSALSETEKM 120
SEEKYKIDSLKLRPIEYVFDCPPLSRQMCEFVKWVADYTFSPMGLVARMVVSALSETEKM
Sbjct: 61 SEEKYKIDSLKLRPIEYVFDCPPLSRQMCEFVKWVADYTFSPMGLVARMVVSALSETEKM 120
Query: 121 EEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDLIRASQVSSHVIDGLKAQGVIKQIF 180
EEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDLIRASQVSSHVIDGLKAQGVIKQIF
Sbjct: 121 EEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDLIRASQVSSHVIDGLKAQGVIKQIF 180
Query: 181 EVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVA 240
EVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVA
Sbjct: 181 EVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVA 240
Query: 241 AVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISV 300
AVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISV
Sbjct: 241 AVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISV 300
Query: 301 IVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATP 360
IVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATP
Sbjct: 301 IVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATP 360
Query: 361 SIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLAR 420
SIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLAR
Sbjct: 361 SIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLAR 420
Query: 421 NEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCV 480
NEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCV
Sbjct: 421 NEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCV 480
Query: 481 VCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDII 540
VCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDII
Sbjct: 481 VCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDII 540
Query: 541 IGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600
IGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI
Sbjct: 541 IGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600
Query: 601 QAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNL 660
QAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNL
Sbjct: 601 QAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNL 660
Query: 661 KEHAPRSSDIVVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNALR 720
KEHAPRSSDIVVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNALR
Sbjct: 661 KEHAPRSSDIVVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNALR 720
Query: 721 VQFDIDPQNFL 731
VQFDIDPQNFL
Sbjct: 721 VQFDIDPQNFL 731
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 20/234 (8%)
Query: 115 SETEKMEEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDL---IRASQVSSHVIDGLK 171
++ K+ ++ + R +T LDK+ G W+ R R ++ ++D
Sbjct: 540 ADNAKLFVPVENIDLISRYSTEITTVTLDKL-GGSAWKTRKANLKKRLEDLAQKLVDI-- 596
Query: 172 AQGVIKQIFEVISPVVDSPNLYFSL-----PILDKNQQDVVEQVVPLCTKGFAVS-LISG 225
K+ + P++ S +LY + ++Q+ ++ V+ + G + LI G
Sbjct: 597 ---AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICG 653
Query: 226 VTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKR---FGVKPAEWHSSLS 282
G GKTE+ L + G QV ++ P L F +R F V+ A +
Sbjct: 654 DVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQ 713
Query: 283 TSMREKIWRQVARGAISVIVGVRSALF--LPFKKLGLIVIDEEHDISYKQEEGI 334
T + + G + +++G + L + F LGLI+IDEE K +E +
Sbjct: 714 TKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEAL 767
Score = 26.9 bits (58), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 527 LQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVT 586
L +I +G++DI+IGT + P+++ +LGL D E+ F + +
Sbjct: 719 LHKKSITEGQVDIVIGTHALLN----PKITF-----ANLGLIIID---EEQHFGVKHKEA 766
Query: 587 GRAGRFGLKSLGLIQAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRLA 641
+ G+ L L + P +Q ++G +R +++PP R+A
Sbjct: 767 LKETHTGVHVLTL--SATPIPRTLQLAITG---------VRELSLISMPPINRIA 810
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 43.9 bits (102), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 201 KNQQDVVEQVV-PLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLT 259
K+Q+ ++ ++ + K + ++ G GSGKT V L +AA + G Q +I+ P I +
Sbjct: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGIL 333
Query: 260 SAILERFQKRFGVKPAEWHSSLSTSM----REKIWRQVARGAISVIVGVRSALF---LPF 312
+ F K++ ++ +M R K ++A G +I+G ALF + +
Sbjct: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
Query: 313 KKLGLIVIDEEHDISYKQ 330
KL L+++DE+H +Q
Sbjct: 393 YKLILVIVDEQHRFGVQQ 410
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 35.8 bits (81), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 112 SALSETEKMEEKIQFTGIFPRINTVARLRVLDK--IKDGKIWEKRDLIRASQVSSHVIDG 169
S++S +EK +I + P + +ARL D +K+GKIW R+ +++H D
Sbjct: 82 SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPH---RSWSINNHSKDI 138
Query: 170 LKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGS 229
Q+ P D P + Q++ V L+ GVTGS
Sbjct: 139 -----TFFQMQTDYHPSGDQPA--------------AIAQLLKGIHSREKVQLLLGVTGS 179
Query: 230 GKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSS 280
GKT +++ A + + +++ P L + + F+ F E+ S
Sbjct: 180 GKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
Score = 32.7 bits (73), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 481 VCGSSGKMIACGFGIERIAEEVCEYF--PLARISILSSDLEGGGGRLQLQLSAIAKGEID 538
+ G I +R+AE++ EY R+ + S+++ R+++ + + G+ D
Sbjct: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE-RIEI-IRDLRLGKFD 634
Query: 539 IIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGR 591
+++G L+ +G + P LV ++D D LRS L Q GRA R
Sbjct: 635 VLVGINLLREGLDIPECGLVAILDAD---KEGFLRSKTS----LIQTIGRAAR 680
Score = 24.6 bits (52), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 199 LDKNQQDVVEQVV-PLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEIS 257
L++ Q +VEQ++ P V + S T +VY EI A G ++L+ +
Sbjct: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--EDVYDEINLAAQQ-GLRILLTVLTKR 593
Query: 258 LTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV---RSALFLPFKK 314
+ + E +R ++ HS + T R +I R + G V+VG+ R L +P +
Sbjct: 594 MAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--E 650
Query: 315 LGLIVI 320
GL+ I
Sbjct: 651 CGLVAI 656
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 30.0 bits (66), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQK 268
+I G G+GK++ I+AA + GK++L +++ + R +K
Sbjct: 423 IIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEK 469
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 30.0 bits (66), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 25/93 (26%)
Query: 493 FGIERIAEEVCEYFPLARISILSSDL------EGGGGRLQLQLSAIAKGEIDIIIGTQLV 546
FG+E++ E + EY + I + L G G+ L S IAK
Sbjct: 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQS-IAK------------ 388
Query: 547 AKGHNFPRMSLVGVVDGDLGLTNADLRSSERTF 579
A G + RMSL GV D AD+R RT+
Sbjct: 389 ATGRQYVRMSLGGVYD------EADIRGHRRTY 415
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 29.6 bits (65), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 529 LSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGR 588
L + G + I T + A+G + P + LV +A+L S+ S TGR
Sbjct: 287 LQMMRDGRARVCIATDVAARGIDLPDLELV---------IHAELSSNPENLLHRSGRTGR 337
Query: 589 AGRFGLKSLGLIQAYQ 604
AGR G+ + Q Q
Sbjct: 338 AGRKGMSVFVIPQNMQ 353
>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 28.5 bits (62), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 213 LCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLIL--------LPEISLTSAILE 264
L K F V++ SG G GK+ + I A+ + GK V IL +P++ S +E
Sbjct: 92 LNVKKF-VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE 150
Query: 265 RFQKRFGVKPAEWHS----SLSTSMREK---IWR 291
K+F +KP E + S+++ + E IWR
Sbjct: 151 ISDKKF-LKPKENYGIKIMSMASLVDENVAMIWR 183
>gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
Length = 123
Score = 24.6 bits (52), Expect = 6.0, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 300 VIVGVRSALFLPFKKL 315
V++ R ALF+PFK+L
Sbjct: 83 VLIAKRDALFIPFKEL 98
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,154
Number of Sequences: 1233
Number of extensions: 18678
Number of successful extensions: 61
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 18
length of query: 731
length of database: 328,796
effective HSP length: 81
effective length of query: 650
effective length of database: 228,923
effective search space: 148799950
effective search space used: 148799950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 42 (20.8 bits)