HHsearch alignment for GI: 254780620 and conserved domain: COG1339
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism].
Probab=90.87 E-value=0.67 Score=26.42 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=48.9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCC-----HHHHHHHHCC
Q ss_conf 99999999855986335999999819978999999999932590573156545400023721260-----9999999718
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT-----ILDVVKATEE 84 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~It-----l~dI~~aie~ 84 (144)
T Consensus 5 ~lk~l~~~~a~~~~~~t~~ela~~l~~S~qta~R~l~~le~~~~I~R~~~~~Gq~-i~iTekG~~~L~~~~~d~~r~~~~ 83 (214)
T COG1339 5 LLKKLALRGAVRGVKVTSSELAKRLGVSSQTAARKLKELEDEGYITRTISKRGQL-ITITEKGIDLLYKEYEDLSRIFDS 83 (214)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCE-EEEHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999987210037602089999885747077889988641178478883379848-981676899999999999999668
Q ss_pred C
Q ss_conf 7
Q gi|254780620|r 85 S 85 (144)
Q Consensus 85 ~ 85 (144)
T Consensus 84 ~ 84 (214)
T COG1339 84 G 84 (214)
T ss_pred C
T ss_conf 8