HHsearch alignment for GI: 254780620 and conserved domain: COG4465
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription].
Probab=93.58 E-value=0.12 Score=30.87 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHH--C-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCE
Q ss_conf 64568999999999985--5-98633599999981997899999999993259057315-6545400
Q gi|254780620|r 3 LTKRTDYGIRVLMYCAI--H-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 (144)
Q Consensus 3 is~~~~yAi~~l~~La~--~-~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~ 65 (144)
T Consensus 180 i~tLSYSEleAve~I~eELdG~EG~lvASkiADrvGITRSVIVNALRKlESAGvIeSRSLGMKGTyi 246 (261)
T COG4465 180 ISTLSYSELEAVEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 246 (261)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEE
T ss_conf 8542498999999999862886653630245565173399999999876543754312367662267