HHsearch alignment for GI: 254780620 and conserved domain: COG4465

>COG4465 CodY Pleiotropic transcriptional repressor [Transcription].
Probab=93.58  E-value=0.12  Score=30.87  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHHHH--C-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCE
Q ss_conf             64568999999999985--5-98633599999981997899999999993259057315-6545400
Q gi|254780620|r    3 LTKRTDYGIRVLMYCAI--H-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR   65 (144)
Q Consensus         3 is~~~~yAi~~l~~La~--~-~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~   65 (144)
T Consensus       180 i~tLSYSEleAve~I~eELdG~EG~lvASkiADrvGITRSVIVNALRKlESAGvIeSRSLGMKGTyi  246 (261)
T COG4465         180 ISTLSYSELEAVEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYI  246 (261)
T ss_pred             HHHCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEE
T ss_conf             8542498999999999862886653630245565173399999999876543754312367662267