HHsearch alignment for GI: 254780620 and conserved domain: PRK11014

>PRK11014 transcriptional repressor NsrR; Provisional.
Probab=100.00  E-value=1.8e-40  Score=260.08  Aligned_cols=139  Identities=35%  Similarity=0.596  Sum_probs=131.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHH
Q ss_conf             976456899999999998559-8633599999981997899999999993259057315654540002372126099999
Q gi|254780620|r    1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV   79 (144)
Q Consensus         1 Mkis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~   79 (144)
T Consensus         1 Mkls~~tdYAlraL~~LA~~~~~~~~~~~eIae~~~Ip~~~L~KIl~~L~~aGlv~S~RG~~GGy~Lar~p~~Itl~dVi   80 (141)
T PRK11014          1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASTIRIGDVV   80 (141)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCHHHCCHHHHH
T ss_conf             98872886999999999839999847499999987949999999999998879567204799883214898879799999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHCC
Q ss_conf             9971876311146887788876566447999999999999998417999999158989995278
Q gi|254780620|r   80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA  143 (144)
Q Consensus        80 ~aie~~~~~~~C~~~~~~~C~~~~~c~~~~~~~~~~~~~~~~L~~~TL~dl~~~~~~~~~l~~~  143 (144)
T Consensus        81 ~aiE-~~~~~~C~~---~~C~~~~~C~l~~~~~~~~~~~~~~L~~~TLadli~~~~~l~~l~~~  140 (141)
T PRK11014         81 RELE-PLSLVNCSS---EFCHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLLLV  140 (141)
T ss_pred             HHHC-CCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCC
T ss_conf             9946-765436799---99999998845499999999999999429299997496758998675