HHsearch alignment for GI: 254780620 and conserved domain: PRK11014
>PRK11014 transcriptional repressor NsrR; Provisional.
Probab=100.00 E-value=1.8e-40 Score=260.08 Aligned_cols=139 Identities=35% Similarity=0.596 Sum_probs=131.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHH
Q ss_conf 976456899999999998559-8633599999981997899999999993259057315654540002372126099999
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~ 79 (144)
T Consensus 1 Mkls~~tdYAlraL~~LA~~~~~~~~~~~eIae~~~Ip~~~L~KIl~~L~~aGlv~S~RG~~GGy~Lar~p~~Itl~dVi 80 (141)
T PRK11014 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASTIRIGDVV 80 (141)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCHHHCCHHHHH
T ss_conf 98872886999999999839999847499999987949999999999998879567204799883214898879799999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHCC
Q ss_conf 9971876311146887788876566447999999999999998417999999158989995278
Q gi|254780620|r 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 (144)
Q Consensus 80 ~aie~~~~~~~C~~~~~~~C~~~~~c~~~~~~~~~~~~~~~~L~~~TL~dl~~~~~~~~~l~~~ 143 (144)
T Consensus 81 ~aiE-~~~~~~C~~---~~C~~~~~C~l~~~~~~~~~~~~~~L~~~TLadli~~~~~l~~l~~~ 140 (141)
T PRK11014 81 RELE-PLSLVNCSS---EFCHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLLLV 140 (141)
T ss_pred HHHC-CCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCC
T ss_conf 9946-765436799---99999998845499999999999999429299997496758998675