HHsearch alignment for GI: 254780620 and conserved domain: PRK11512
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional.
Probab=90.61 E-value=0.81 Score=25.91 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=39.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 999998559863359999998199789999999999325905731565454
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
T Consensus 45 vL~~L~~--~~~~t~~eLa~~l~id~~tvt~~ldrLe~~GlI~R~~~p~Dr 93 (144)
T PRK11512 45 VLCSIRC--AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK 93 (144)
T ss_pred HHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf 9999998--699799999999788887899999999978796635798776