HHsearch alignment for GI: 254780620 and conserved domain: PRK11569
>PRK11569 transcriptional repressor IclR; Provisional.
Probab=96.85 E-value=0.006 Score=38.49 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC
Q ss_conf 689999999999855986335999999819978999999999932590573156545400023
Q gi|254780620|r 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 (144)
Q Consensus 6 ~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak 68 (144)
T Consensus 26 sl~Ral~IL~~la~~~-~~lsl~eia~~lglpksT~~RlL~tL~~~G~v~~~-~~~~~Y~LG~ 86 (274)
T PRK11569 26 SLTRGLKLLEWIAESN-GSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQV-GELGHWAIGA 86 (274)
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCCCEECCCH
T ss_conf 9999999999996389-99899999998791999999999999976987786-9988022457