HHsearch alignment for GI: 254780620 and conserved domain: TIGR02404
>TIGR02404 trehalos_R_Bsub trehalose operon repressor; InterPro: IPR012770 This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from Escherichia coli..
Probab=91.18 E-value=0.32 Score=28.32 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=48.9
Q ss_pred CCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH
Q ss_conf 9863359-99999819978999999999932590573156545400023721260999999
Q gi|254780620|r 21 NDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 (144)
Q Consensus 21 ~~~~~s~-~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~ 80 (144)
T Consensus 20 ~G~~LPSE~~L~~~Y~~SReTvRKAL~~L~~~GyIQKi~GK-GsiVl~~~~~~fP~SGivS 79 (236)
T TIGR02404 20 EGDLLPSEHELMEQYGASRETVRKALNLLTEAGYIQKIRGK-GSIVLNREKYEFPISGIVS 79 (236)
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC-EEEEECCCCCCCCCCCCHH
T ss_conf 87738887899986068745889999999857871676152-3487667631048630011