HHsearch alignment for GI: 254780620 and conserved domain: TIGR02431
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; InterPro: IPR012794 Members of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription, 0046278 protocatechuate metabolic process.
Probab=92.83 E-value=0.25 Score=28.96 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHH
Q ss_conf 999999998559863359999998199789999999999325905731565454000237212609999
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI 78 (144)
T Consensus 11 GLaVi~aF~~~-~~~ltl~~vA~~TGL~RAaARR~LLTL~~LGY~~~Dg~---~F~L--TPrvL~LG~a 73 (252)
T TIGR02431 11 GLAVIEAFGEE-RPRLTLTDVAEATGLTRAAARRFLLTLVELGYVESDGR---LFWL--TPRVLRLGYA 73 (252)
T ss_pred HHHHHHHHCCC-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEECCCC---CEEC--CHHHHHHHHH
T ss_conf 99999973103-78989899998758994798889984656230421798---3310--2467753322