HHsearch alignment for GI: 254780620 and conserved domain: TIGR03338
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=94.98 E-value=0.19 Score=29.57 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=48.4
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC-CHHHC-CHHHHHHHHCC
Q ss_conf 99999998-55986335999999819978999999999932590573156545400023-72126-09999999718
Q gi|254780620|r 11 IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-PADQI-TILDVVKATEE 84 (144)
Q Consensus 11 i~~l~~La-~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak-~~~~I-tl~dI~~aie~ 84 (144)
T Consensus 20 lr~~I~~g~l~pG~~L~E~~La~~~gVSRtpvREAL~~L~~eGlv~~~~~~--G~~V~~~~~~~~~ei~~~R~~lE~ 94 (212)
T TIGR03338 20 IERAILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRNEKNR--GVFVREISLAEADEIYELRAVLDE 94 (212)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEECCC--CEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 999998399999098189999998896949999999999986963311677--615511768888789999999999