HHsearch alignment for GI: 254780620 and conserved domain: TIGR03338

>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=94.98  E-value=0.19  Score=29.57  Aligned_cols=72  Identities=19%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             HHHHHHHH-HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC-CHHHC-CHHHHHHHHCC
Q ss_conf             99999998-55986335999999819978999999999932590573156545400023-72126-09999999718
Q gi|254780620|r   11 IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-PADQI-TILDVVKATEE   84 (144)
Q Consensus        11 i~~l~~La-~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak-~~~~I-tl~dI~~aie~   84 (144)
T Consensus        20 lr~~I~~g~l~pG~~L~E~~La~~~gVSRtpvREAL~~L~~eGlv~~~~~~--G~~V~~~~~~~~~ei~~~R~~lE~   94 (212)
T TIGR03338        20 IERAILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRNEKNR--GVFVREISLAEADEIYELRAVLDE   94 (212)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEECCC--CEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             999998399999098189999998896949999999999986963311677--615511768888789999999999