HHsearch alignment for GI: 254780620 and conserved domain: pfam02002
>pfam02002 TFIIE_alpha TFIIE alpha subunit. The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF. This family consists of the conserved amino terminal region of eukaryotic TFIIE-alpha and proteins from archaebacteria that are presumed to be TFIIE-alpha subunits.
Probab=93.80 E-value=0.19 Score=29.64 Aligned_cols=50 Identities=26% Similarity=0.096 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 9999999985598633599999981997899999999993259057315654
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
T Consensus 15 ~v~vid~L~~~--~~v~dedLa~~l~~~~n~vRkiL~~L~e~~lv~~~r~kd 64 (105)
T pfam02002 15 AVLVLDALLRK--GEVTEEDLAELLGIDLNELRKLLYRLYDARLVKYRRRRD 64 (105)
T ss_pred HHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 89999999716--883899999997898889999999998788658897661