HHsearch alignment for GI: 254780620 and conserved domain: pfam02082

>pfam02082 Rrf2 Transcriptional regulator. This family is related to pfam001022 and other transcription regulation families (personal obs: Yeats C).
Probab=99.92  E-value=3.9e-25  Score=169.49  Aligned_cols=81  Identities=48%  Similarity=0.775  Sum_probs=77.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH
Q ss_conf             76456899999999998559-86335999999819978999999999932590573156545400023721260999999
Q gi|254780620|r    2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK   80 (144)
Q Consensus         2 kis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~   80 (144)
T Consensus         1 kls~~~~yAl~~l~~La~~~~~~~~s~~~iA~~~~i~~~~l~kil~~L~~~gli~s~rG~~GGy~L~k~~~~Itl~dIi~   80 (82)
T pfam02082         1 KLSTKTDYALHALLYLALHPGEGPVTSEEIAERQNISPVYLRKILAKLRKAGLVKSVRGPGGGYRLARPPEEITLLDVVR   80 (82)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHCCHHHHHH
T ss_conf             98819999999999998189998495999998789099999999998102798256589998811348989895999998


Q ss_pred             HH
Q ss_conf             97
Q gi|254780620|r   81 AT   82 (144)
Q Consensus        81 ai   82 (144)
T Consensus        81 ai   82 (82)
T pfam02082        81 AV   82 (82)
T ss_pred             HC
T ss_conf             79