HHsearch alignment for GI: 254780620 and conserved domain: pfam09182
>pfam09182 PuR_N Bacterial purine repressor, N-terminal. The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA.
Probab=90.68 E-value=0.77 Score=26.05 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH-------HHHHHHHHCCCEEECCCCCCCCEE
Q ss_conf 899999999998559863359999998199789999-------999999325905731565454000
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLF-------KILQPLVKAGIVETVRGRRGGVRL 66 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~-------kil~~L~~agli~S~rG~~GGy~L 66 (144)
T Consensus 3 seRlv~mt~~Ll~~P~~li~L~~Fae~~~~AKSsISEDl~iik~~~~~-~g~G~leTi~GaaGGv~y 68 (70)
T pfam09182 3 SERLVAMTKYLLENPNKLIPLTYFAERFGSAKSSISEDLVIIKETFEK-FGLGKLETIPGAAGGVKY 68 (70)
T ss_pred CHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCEEE
T ss_conf 048999999998299855749999998660102037579999999987-398629984587778563