HHsearch alignment for GI: 254780620 and conserved domain: pfam09202
>pfam09202 Rio2_N Rio2, N-terminal. Members of this family are found in Rio2, and are structurally homologous to the winged helix (wHTH) domain. They adopt a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains.
Probab=94.40 E-value=0.23 Score=29.15 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHH
Q ss_conf 689999999999855986335999999819978999999999932590573156545400023721
Q gi|254780620|r 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 (144)
Q Consensus 6 ~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~ 71 (144)
T Consensus 6 ~~dfRvL~aiE~gmrnhE~VP~~lI~~~s~L~~~~~~~~L~~L~k~kLv~~~~~~Y~GYrLT~~GY 71 (82)
T pfam09202 6 KEDFRVLTAVEMGMRNHEWVPTELITSISRLRAGGVNKRLSRLLKRKLVSRKNAKYDGYRLTYLGY 71 (82)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCC
T ss_conf 999999999994446875478999999968886679999999976789533588853288710673