HHsearch alignment for GI: 254780620 and conserved domain: smart00862

>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.

Probab=91.30  E-value=0.93  Score=25.56  Aligned_cols=55  Identities=24%  Similarity=0.338  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHH-C-----CCH----HHHHHHHHHHHHC----CCEEECCCCCCCCEE
Q ss_conf             9999999985598633599999981-9-----978----9999999999325----905731565454000
Q gi|254780620|r   10 GIRVLMYCAIHNDYPNRISQIAEAC-C-----ISE----LFLFKILQPLVKA----GIVETVRGRRGGVRL   66 (144)
Q Consensus        10 Ai~~l~~La~~~~~~~s~~eIA~~~-~-----i~~----~~l~kil~~L~~a----gli~S~rG~~GGy~L   66 (144)
T Consensus        10 e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~I~~LR~kl~~~~~~~~~i~t~~g~--GY~l   78 (78)
T smart00862       10 EFRLLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLEDDGANPRLIETVRGV--GYRL   78 (78)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC--CCCC
T ss_conf             99999999847996296999998762888788886027899999999976458999959983795--6449