HHsearch results for GI: 254780620 and protein with PDBid: 1kgs_A
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=93.24 E-value=0.21 Score=28.05 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHH-----CCC----HHHHHHHHHHHHH---CCCEEECCCCCCCCEECCC
Q ss_conf 999999985598633599999981-----997----8999999999932---5905731565454000237
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEAC-----CIS----ELFLFKILQPLVK---AGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~-----~i~----~~~l~kil~~L~~---agli~S~rG~~GGy~Lak~ 69 (144)
..+|.+|+.++++.+|-++|.+.. ..+ ..++.++-++|.. ..+|+++||. ||+|..+
T Consensus 157 ~~lL~~L~~~~~~vvsr~~L~~~vwg~~~~~~~~tl~~~I~rLR~KL~~~~~~~~I~tv~g~--GY~l~~e 225 (225)
T 1kgs_A 157 YQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGI--GYVARDE 225 (225)
T ss_dssp HHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTT--EEEECCC
T ss_pred HHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCE--EEEEEEC
T ss_conf 99999987524344429999998717777876576999999999984577999948991360--0898239