HHsearch results for GI: 254780620 and protein with PDBid: 1ub9_A

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=96.90  E-value=0.0014  Score=40.99  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=49.2

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHH
Q ss_conf             99999998559863359999998199789999999999325905731565454----000237212
Q gi|254780620|r   11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQ   72 (144)
Q Consensus        11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~   72 (144)
                      +++|.+|..+  ++.+..+||+..+++++-+.+.+..|.++|+|+..+...++    |+|.....+
T Consensus        19 ~~IL~~L~~~--~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~   82 (100)
T 1ub9_A           19 LGIMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME   82 (100)
T ss_dssp             HHHHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred             HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHH
T ss_conf             9999998518--998399999998919989999999998589069987488897310035999999