HHsearch results for GI: 254780620 and protein with PDBid: 1ub9_A
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=96.90 E-value=0.0014 Score=40.99 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454----000237212
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQ 72 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~ 72 (144)
+++|.+|..+ ++.+..+||+..+++++-+.+.+..|.++|+|+..+...++ |+|.....+
T Consensus 19 ~~IL~~L~~~--~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~ 82 (100)
T 1ub9_A 19 LGIMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHH
T ss_conf 9999998518--998399999998919989999999998589069987488897310035999999