HHsearch results for GI: 254780620 and protein with PDBid: 3jth_A

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=97.01  E-value=0.0018  Score=40.29  Aligned_cols=66  Identities=15%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf             999999985598633599999981997899999999993259057315-6545400023721260999999971
Q gi|254780620|r   11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKATE   83 (144)
Q Consensus        11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~aie   83 (144)
                      ++++..|+   +++.++.+|++..++|++-+.+-|+.|+++|+|.+.| |+.==|+|+.+.    +.++++.+.
T Consensus        26 l~Il~~L~---~~~~~v~ela~~l~~s~~tvS~HL~~L~~aglV~~~r~G~~~~Y~l~~~~----~~~~~~~L~   92 (98)
T 3jth_A           26 LQILCMLH---NQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE----VKAMIKLLH   92 (98)
T ss_dssp             HHHHHHTT---TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH----HHHHHHHHH
T ss_pred             HHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHH----HHHHHHHHH
T ss_conf             99999997---29937999999988595678899999998894269987689999988599----999999999