HHsearch results for GI: 254780620 and protein with PDBid: 3lwf_A
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=100.00 E-value=6.5e-37 Score=237.74 Aligned_cols=128 Identities=27% Similarity=0.443 Sum_probs=118.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHH
Q ss_conf 976456899999999998559-8633599999981997899999999993259057315654540002372126099999
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~ 79 (144)
||||++++||||+|++||.++ ++++|+++||+++++|++||+|||+.|+++|||+|+||++|||+|+++|++|||+||+
T Consensus 20 Mkls~k~~YAlr~L~~LA~~~~~~~vs~~eIAe~~~ip~~~L~kIl~~L~kaGlv~S~rG~~GGy~Lak~p~~ItL~dI~ 99 (159)
T 3lwf_A 20 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDII 99 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTCBHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCCCHHHHH
T ss_conf 87876586999999999808899819599999878909999999999983279388368888885455693028999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHHH
Q ss_conf 997187631114688778887656644799999999999999841799999915898
Q gi|254780620|r 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 (144)
Q Consensus 80 ~aie~~~~~~~C~~~~~~~C~~~~~c~~~~~~~~~~~~~~~~L~~~TL~dl~~~~~~ 136 (144)
+++||+..+++|..+ ..|.++.+|.++++++.+.|+++||+||+++...
T Consensus 100 ~aveg~~~~~~c~~~--------~~c~~~~~~~~i~~~~~~~L~~~TL~dL~~~~~~ 148 (159)
T 3lwf_A 100 RTLEGPIVLVESMED--------EEAAQRELWTRMRNAVRDVLDQTTLSDLLKHSTD 148 (159)
T ss_dssp HHHSCCCCSCCCCTT--------CCHHHHHHHHHHHHHHHHHHHHCBHHHHHHCCSC
T ss_pred HHHCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHH
T ss_conf 998587776578999--------5067999999999999999875879999708775