Query gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 144
No_of_seqs 108 out of 2328
Neff 7.2
Searched_HMMs 23785
Date Tue May 31 18:48:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780620.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwf_A LIN1550 protein, putati 100.0 6.5E-37 2.7E-41 237.7 15.1 128 1-136 20-148 (159)
2 1ylf_A RRF2 family protein; st 100.0 2.9E-35 1.2E-39 228.0 12.6 134 1-135 7-144 (149)
3 1xd7_A YWNA; structural genomi 100.0 2.5E-33 1.1E-37 216.5 11.3 130 3-135 4-135 (145)
4 3k69_A Putative transcription 100.0 3.3E-32 1.4E-36 210.0 13.6 131 4-134 8-147 (162)
5 1bia_A BIRA bifunctional prote 97.6 0.00022 9.4E-09 45.6 8.0 70 11-84 8-78 (321)
6 1j5y_A Transcriptional regulat 97.5 0.00024 1E-08 45.5 6.4 61 6-70 19-80 (187)
7 1mkm_A ICLR transcriptional re 97.3 0.00069 2.9E-08 42.7 7.2 61 7-70 7-67 (249)
8 1r1u_A CZRA, repressor protein 97.2 0.00099 4.2E-08 41.8 7.1 57 11-70 29-86 (106)
9 1sfx_A Conserved hypothetical 97.1 0.00095 4E-08 41.9 6.5 75 7-84 19-96 (109)
10 3cuo_A Uncharacterized HTH-typ 97.0 0.0022 9.4E-08 39.7 7.4 67 11-83 27-94 (99)
11 3jth_A Transcription activator 97.0 0.0018 7.6E-08 40.3 6.8 66 11-83 26-92 (98)
12 1uly_A Hypothetical protein PH 96.9 0.0018 7.4E-08 40.4 6.1 51 10-63 22-73 (192)
13 1ub9_A Hypothetical protein PH 96.9 0.0014 5.8E-08 41.0 5.4 60 11-72 19-82 (100)
14 2oqg_A Possible transcriptiona 96.9 0.0027 1.1E-07 39.3 6.8 55 11-68 24-79 (114)
15 2o0y_A Transcriptional regulat 96.9 0.0014 5.9E-08 40.9 5.3 61 7-70 22-82 (260)
16 3by6_A Predicted transcription 96.9 0.0044 1.8E-07 38.0 7.7 57 20-78 30-87 (126)
17 1r1t_A Transcriptional repress 96.9 0.0031 1.3E-07 38.9 7.0 65 11-82 49-114 (122)
18 1u2w_A CADC repressor, cadmium 96.8 0.0041 1.7E-07 38.2 7.6 58 11-70 45-103 (122)
19 3bro_A Transcriptional regulat 96.8 0.0031 1.3E-07 38.9 6.8 52 11-62 37-88 (141)
20 1fx7_A Iron-dependent represso 96.8 0.0038 1.6E-07 38.4 7.1 70 2-74 3-72 (230)
21 1on2_A Transcriptional regulat 96.8 0.0025 1.1E-07 39.4 5.9 66 5-73 4-69 (142)
22 2x4h_A Hypothetical protein SS 96.7 0.0048 2E-07 37.8 7.2 69 2-74 10-78 (139)
23 2d1h_A ST1889, 109AA long hypo 96.7 0.0028 1.2E-07 39.1 6.1 52 8-60 21-72 (109)
24 3f6o_A Probable transcriptiona 96.7 0.003 1.3E-07 39.0 6.1 57 11-70 21-78 (118)
25 3eco_A MEPR; mutlidrug efflux 96.7 0.0075 3.2E-07 36.6 8.0 53 11-63 34-86 (139)
26 2zkz_A Transcriptional repress 96.7 0.0043 1.8E-07 38.1 6.7 66 11-83 30-96 (99)
27 3nqo_A MARR-family transcripti 96.7 0.0084 3.5E-07 36.4 8.1 70 11-80 44-115 (189)
28 2p4w_A Transcriptional regulat 96.7 0.0042 1.8E-07 38.1 6.6 57 11-70 18-80 (202)
29 2kko_A Possible transcriptiona 96.7 0.0053 2.2E-07 37.5 7.0 68 11-82 28-96 (108)
30 1ku9_A Hypothetical protein MJ 96.6 0.0073 3.1E-07 36.7 7.2 61 10-71 28-90 (152)
31 2jsc_A Transcriptional regulat 96.6 0.0015 6.2E-08 40.8 3.6 57 11-70 24-81 (118)
32 2qq9_A Diphtheria toxin repres 96.5 0.0057 2.4E-07 37.3 6.5 69 2-73 3-71 (226)
33 2frh_A SARA, staphylococcal ac 96.5 0.0035 1.5E-07 38.6 5.2 53 11-63 40-92 (127)
34 2ia2_A Putative transcriptiona 96.5 0.0049 2E-07 37.7 5.9 64 6-73 19-82 (265)
35 3hrs_A Metalloregulator SCAR; 96.4 0.0045 1.9E-07 38.0 5.4 65 5-73 3-67 (214)
36 2wv0_A YVOA, HTH-type transcri 96.4 0.013 5.6E-07 35.2 7.6 68 1-70 1-78 (243)
37 2hr3_A Probable transcriptiona 96.3 0.0095 4E-07 36.0 6.6 53 10-63 37-89 (147)
38 2g7u_A Transcriptional regulat 96.3 0.008 3.4E-07 36.5 6.2 60 6-69 12-71 (257)
39 1y0u_A Arsenical resistance op 96.3 0.01 4.4E-07 35.8 6.7 46 24-72 43-88 (96)
40 3lst_A CALO1 methyltransferase 96.2 0.017 7.1E-07 34.6 7.4 63 8-73 36-101 (348)
41 2wte_A CSA3; antiviral protein 96.2 0.009 3.8E-07 36.2 5.9 60 9-71 153-212 (244)
42 2eth_A Transcriptional regulat 96.2 0.023 9.6E-07 33.8 7.9 70 10-81 46-117 (154)
43 1p4x_A Staphylococcal accessor 96.2 0.0082 3.5E-07 36.4 5.6 75 10-84 36-113 (250)
44 2ek5_A Predicted transcription 96.2 0.023 9.5E-07 33.8 7.8 68 1-70 1-72 (129)
45 3eet_A Putative GNTR-family tr 96.2 0.0081 3.4E-07 36.5 5.5 49 20-69 48-97 (272)
46 3neu_A LIN1836 protein; struct 96.1 0.0093 3.9E-07 36.1 5.7 49 20-70 32-81 (125)
47 2h09_A Transcriptional regulat 96.1 0.0064 2.7E-07 37.0 4.9 64 8-74 39-102 (155)
48 2r3s_A Uncharacterized protein 96.1 0.0096 4E-07 36.0 5.6 60 9-71 21-83 (335)
49 3f6v_A Possible transcriptiona 96.1 0.005 2.1E-07 37.7 4.2 56 11-69 61-117 (151)
50 2di3_A Bacterial regulatory pr 96.1 0.027 1.1E-06 33.4 7.8 50 20-69 23-75 (239)
51 3cta_A Riboflavin kinase; stru 96.1 0.014 5.7E-07 35.1 6.3 73 1-73 3-77 (230)
52 2rdp_A Putative transcriptiona 96.0 0.015 6.3E-07 34.9 6.3 51 11-63 45-95 (150)
53 1x19_A CRTF-related protein; m 96.0 0.015 6.4E-07 34.8 6.3 59 9-70 46-107 (359)
54 3dp7_A SAM-dependent methyltra 96.0 0.015 6.3E-07 34.9 6.1 61 10-73 31-96 (363)
55 3bdd_A Regulatory protein MARR 95.9 0.019 8.1E-07 34.2 6.5 52 10-63 33-84 (142)
56 3b73_A PHIH1 repressor-like pr 95.9 0.012 4.9E-07 35.5 5.4 58 11-72 16-75 (111)
57 2a61_A Transcriptional regulat 95.9 0.016 6.6E-07 34.7 5.9 51 11-63 36-86 (145)
58 2hs5_A Putative transcriptiona 95.8 0.019 8.1E-07 34.2 6.2 60 19-81 46-105 (239)
59 3nrv_A Putative transcriptiona 95.8 0.02 8.4E-07 34.1 6.2 66 11-78 43-110 (148)
60 1hw1_A FADR, fatty acid metabo 95.8 0.041 1.7E-06 32.3 7.7 62 5-68 7-73 (239)
61 2gxg_A 146AA long hypothetical 95.7 0.023 9.8E-07 33.7 6.3 63 11-76 40-104 (146)
62 3gwz_A MMCR; methyltransferase 95.7 0.023 9.8E-07 33.7 6.3 60 9-69 53-115 (369)
63 3ihu_A Transcriptional regulat 95.7 0.026 1.1E-06 33.4 6.4 76 6-84 17-99 (222)
64 3dbw_A Transcriptional regulat 95.7 0.024 9.9E-07 33.7 6.1 59 19-80 38-96 (226)
65 2qlz_A Transcription factor PF 95.6 0.0038 1.6E-07 38.4 1.9 57 10-69 14-77 (232)
66 2nyx_A Probable transcriptiona 95.6 0.025 1E-06 33.6 6.1 51 11-63 48-98 (168)
67 3g3z_A NMB1585, transcriptiona 95.6 0.063 2.6E-06 31.2 8.0 65 11-77 34-100 (145)
68 1tw3_A COMT, carminomycin 4-O- 95.5 0.026 1.1E-06 33.4 6.0 62 6-69 31-95 (360)
69 3c7j_A Transcriptional regulat 95.5 0.033 1.4E-06 32.8 6.5 63 19-84 44-109 (237)
70 2fbh_A Transcriptional regulat 95.5 0.043 1.8E-06 32.2 7.0 67 11-78 40-108 (146)
71 2qvo_A Uncharacterized protein 95.5 0.036 1.5E-06 32.6 6.6 75 10-85 17-94 (95)
72 3boq_A Transcriptional regulat 95.5 0.01 4.3E-07 35.8 3.8 66 11-77 50-117 (160)
73 3k2z_A LEXA repressor; winged 95.5 0.051 2.2E-06 31.7 7.3 71 1-71 1-71 (196)
74 3ech_A MEXR, multidrug resista 95.5 0.019 8E-07 34.3 5.0 52 10-63 39-90 (142)
75 1p4x_A Staphylococcal accessor 95.4 0.014 5.9E-07 35.0 4.2 73 10-82 160-235 (250)
76 2fa5_A Transcriptional regulat 95.4 0.029 1.2E-06 33.1 5.8 61 11-73 52-116 (162)
77 3edp_A LIN2111 protein; APC883 95.3 0.035 1.5E-06 32.7 6.0 57 21-79 29-86 (236)
78 1qzz_A RDMB, aclacinomycin-10- 95.3 0.042 1.8E-06 32.2 6.4 60 8-67 30-92 (374)
79 3k0l_A Repressor protein; heli 95.3 0.063 2.7E-06 31.2 7.2 105 11-128 49-157 (162)
80 2qww_A Transcriptional regulat 95.3 0.036 1.5E-06 32.6 5.9 46 11-58 44-89 (154)
81 3jw4_A Transcriptional regulat 95.3 0.012 5.2E-07 35.4 3.5 52 11-62 44-95 (148)
82 3bpv_A Transcriptional regulat 95.3 0.043 1.8E-06 32.2 6.3 51 10-62 31-81 (138)
83 2ip2_A Probable phenazine-spec 95.3 0.025 1.1E-06 33.5 5.1 56 10-68 24-83 (334)
84 2pex_A Transcriptional regulat 95.2 0.043 1.8E-06 32.2 6.3 50 11-62 50-99 (153)
85 1lj9_A Transcriptional regulat 95.2 0.048 2E-06 31.9 6.5 51 11-63 32-82 (144)
86 3f3x_A Transcriptional regulat 95.2 0.036 1.5E-06 32.6 5.8 68 11-81 40-109 (144)
87 1fp2_A Isoflavone O-methytrans 95.2 0.025 1.1E-06 33.5 5.0 60 9-68 31-98 (352)
88 3bj6_A Transcriptional regulat 95.2 0.049 2E-06 31.8 6.4 59 11-71 43-105 (152)
89 1z91_A Organic hydroperoxide r 95.2 0.028 1.2E-06 33.3 5.2 51 11-63 43-93 (147)
90 3bja_A Transcriptional regulat 95.2 0.024 9.9E-07 33.7 4.7 51 11-63 36-86 (139)
91 3bwg_A Uncharacterized HTH-typ 95.2 0.03 1.3E-06 33.1 5.3 49 20-70 24-73 (239)
92 3i53_A O-methyltransferase; CO 95.2 0.057 2.4E-06 31.4 6.7 58 10-69 21-81 (332)
93 2nnn_A Probable transcriptiona 95.2 0.042 1.8E-06 32.2 6.0 51 11-63 41-91 (140)
94 2p5v_A Transcriptional regulat 95.1 0.12 4.9E-06 29.6 8.2 81 11-93 13-103 (162)
95 1v4r_A Transcriptional repress 95.1 0.01 4.3E-07 35.8 2.6 62 20-83 30-92 (102)
96 3lmm_A Uncharacterized protein 95.0 0.024 1E-06 33.6 4.5 58 10-69 432-491 (583)
97 1jhf_A LEXA repressor; LEXA SO 95.0 0.1 4.4E-06 29.9 7.7 70 1-70 1-72 (202)
98 2fbi_A Probable transcriptiona 95.0 0.042 1.8E-06 32.2 5.7 51 11-63 39-89 (142)
99 3f8m_A GNTR-family protein tra 95.0 0.031 1.3E-06 33.0 4.9 48 19-68 30-78 (248)
100 3deu_A Transcriptional regulat 95.0 0.13 5.3E-06 29.4 8.0 51 11-62 56-106 (166)
101 1s3j_A YUSO protein; structura 94.9 0.055 2.3E-06 31.5 5.9 60 11-72 40-103 (155)
102 3cjn_A Transcriptional regulat 94.8 0.071 3E-06 30.9 6.4 64 11-76 55-120 (162)
103 3oop_A LIN2960 protein; protei 94.8 0.12 4.9E-06 29.6 7.5 64 11-76 40-105 (143)
104 2oz6_A Virulence factor regula 94.7 0.067 2.8E-06 31.0 6.1 36 24-59 164-199 (207)
105 2obp_A Putative DNA-binding pr 94.7 0.1 4.3E-06 30.0 6.9 49 21-69 33-83 (96)
106 3cdh_A Transcriptional regulat 94.5 0.071 3E-06 30.9 5.8 60 11-72 46-109 (155)
107 2bv6_A MGRA, HTH-type transcri 94.4 0.053 2.2E-06 31.6 5.0 62 10-73 39-102 (142)
108 1jgs_A Multiple antibiotic res 94.4 0.095 4E-06 30.1 6.3 50 11-62 37-86 (138)
109 2z9m_A Response regulator YYCF 94.4 0.1 4.3E-06 29.9 6.3 62 8-71 39-113 (120)
110 3e6c_C CPRK, cyclic nucleotide 94.3 0.053 2.2E-06 31.6 4.8 37 24-60 177-213 (250)
111 3fm5_A Transcriptional regulat 94.3 0.077 3.2E-06 30.7 5.6 50 11-61 42-91 (150)
112 3hsr_A HTH-type transcriptiona 94.3 0.091 3.8E-06 30.2 5.9 60 12-73 40-103 (140)
113 2fe3_A Peroxide operon regulat 94.2 0.21 8.8E-06 28.1 7.7 53 14-67 28-87 (145)
114 3e6m_A MARR family transcripti 94.2 0.081 3.4E-06 30.5 5.5 60 11-72 56-119 (161)
115 2hqr_A Putative transcriptiona 94.1 0.089 3.8E-06 30.3 5.6 57 12-70 150-218 (223)
116 3dkw_A DNR protein; CRP-FNR, H 94.1 0.098 4.1E-06 30.1 5.8 36 24-59 178-213 (227)
117 3kcc_A Catabolite gene activat 94.1 0.14 5.9E-06 29.1 6.5 36 24-59 217-252 (260)
118 2fxa_A Protease production reg 94.0 0.099 4.2E-06 30.0 5.7 70 12-84 52-125 (207)
119 2hwv_A DNA-binding response re 93.9 0.08 3.4E-06 30.6 5.1 58 10-69 48-118 (121)
120 1qbj_A Protein (double-strande 93.8 0.37 1.6E-05 26.6 8.3 66 3-68 5-71 (81)
121 3mcz_A O-methyltransferase; ad 93.8 0.084 3.5E-06 30.5 5.0 59 10-71 40-100 (352)
122 1gxq_A PHOB, phosphate regulon 93.7 0.15 6.2E-06 29.0 6.1 57 10-68 36-104 (106)
123 1q1h_A TFE, transcription fact 93.6 0.089 3.8E-06 30.3 4.8 52 9-61 19-70 (110)
124 1opc_A OMPR, OMPRC; transcript 93.6 0.18 7.6E-06 28.5 6.4 61 10-72 36-109 (110)
125 2gwr_A DNA-binding response re 93.6 0.21 8.7E-06 28.1 6.7 59 10-70 158-229 (238)
126 3kp7_A Transcriptional regulat 93.6 0.096 4E-06 30.1 5.0 45 11-58 41-85 (151)
127 1zyb_A Transcription regulator 93.5 0.16 6.9E-06 28.7 6.0 37 24-60 186-222 (232)
128 1zg3_A Isoflavanone 4'-O-methy 93.4 0.13 5.3E-06 29.4 5.4 63 7-69 23-101 (358)
129 3iwz_A CAP-like, catabolite ac 93.4 0.18 7.8E-06 28.4 6.1 36 24-59 187-222 (230)
130 2cfx_A HTH-type transcriptiona 93.4 0.21 8.7E-06 28.1 6.4 78 11-92 8-95 (144)
131 3dv8_A Transcriptional regulat 93.3 0.33 1.4E-05 26.9 7.3 37 24-60 169-205 (220)
132 3ic7_A Putative transcriptiona 93.3 0.011 4.6E-07 35.7 -0.3 50 21-72 31-81 (126)
133 3df8_A Possible HXLR family tr 93.2 0.32 1.3E-05 27.0 7.2 72 9-83 28-100 (111)
134 1kgs_A DRRD, DNA binding respo 93.2 0.21 9E-06 28.1 6.3 57 11-69 157-225 (225)
135 2ia0_A Putative HTH-type trans 93.2 0.31 1.3E-05 27.1 7.1 54 11-66 20-77 (171)
136 1p2f_A Response regulator; DRR 93.1 0.23 9.6E-06 27.9 6.2 58 7-68 149-217 (220)
137 3e97_A Transcriptional regulat 93.1 0.13 5.5E-06 29.3 5.0 36 24-59 175-210 (231)
138 2jzy_A Transcriptional regulat 93.0 0.26 1.1E-05 27.6 6.5 58 11-70 34-103 (112)
139 3l09_A Putative transcriptiona 93.0 0.15 6.5E-06 28.9 5.3 55 19-73 37-95 (266)
140 2zdb_A Transcriptional regulat 93.0 0.085 3.6E-06 30.4 4.0 37 24-60 139-175 (195)
141 1stz_A Heat-inducible transcri 93.0 0.34 1.4E-05 26.9 7.0 57 2-58 14-72 (338)
142 2gau_A Transcriptional regulat 93.0 0.12 5.1E-06 29.5 4.7 45 24-72 180-224 (232)
143 2vn2_A DNAD, chromosome replic 92.7 0.25 1.1E-05 27.6 6.1 52 8-59 32-86 (128)
144 2hqn_A Putative transcriptiona 92.7 0.17 7.1E-06 28.7 5.1 58 11-70 35-104 (109)
145 3la7_A Global nitrogen regulat 92.7 0.14 6E-06 29.1 4.7 45 24-72 193-237 (243)
146 2fbk_A Transcriptional regulat 92.6 0.059 2.5E-06 31.4 2.7 67 12-78 73-142 (181)
147 2v79_A DNA replication protein 92.6 0.15 6.3E-06 28.9 4.8 53 7-59 31-86 (135)
148 2pn6_A ST1022, 150AA long hypo 92.5 0.4 1.7E-05 26.4 6.8 81 11-93 6-96 (150)
149 2cg4_A Regulatory protein ASNC 92.4 0.35 1.5E-05 26.8 6.4 79 10-92 10-99 (152)
150 2fmy_A COOA, carbon monoxide o 92.4 0.2 8.2E-06 28.3 5.1 47 24-73 167-213 (220)
151 1ft9_A Carbon monoxide oxidati 92.2 0.17 7.1E-06 28.6 4.6 34 24-57 163-196 (222)
152 2zcw_A TTHA1359, transcription 92.2 0.17 7.3E-06 28.6 4.7 37 24-60 146-182 (202)
153 2k4j_A Putative transcriptiona 92.0 0.35 1.5E-05 26.8 6.0 56 10-67 46-114 (115)
154 3kfw_X Uncharacterized protein 92.0 0.24 1E-05 27.8 5.1 62 1-69 1-65 (247)
155 2w25_A Probable transcriptiona 91.7 0.43 1.8E-05 26.2 6.3 79 11-93 10-99 (150)
156 2fu4_A Ferric uptake regulatio 91.6 0.38 1.6E-05 26.6 5.8 51 13-63 22-77 (83)
157 1ys7_A Transcriptional regulat 91.6 0.38 1.6E-05 26.6 5.8 56 11-68 165-232 (233)
158 2v9v_A Selenocysteine-specific 91.5 0.46 1.9E-05 26.1 6.2 63 21-83 14-76 (135)
159 1i1g_A Transcriptional regulat 91.4 0.31 1.3E-05 27.1 5.2 79 11-93 7-95 (141)
160 2o03_A Probable zinc uptake re 91.3 0.53 2.2E-05 25.7 6.3 52 13-65 16-72 (131)
161 1qgp_A Protein (double strande 91.3 0.82 3.5E-05 24.6 7.4 65 3-67 9-74 (77)
162 2b0l_A GTP-sensing transcripti 91.3 0.17 7.1E-06 28.7 3.8 60 11-70 27-90 (102)
163 1hsj_A Fusion protein consisti 91.1 0.27 1.1E-05 27.5 4.7 49 11-59 407-455 (487)
164 2w48_A Sorbitol operon regulat 91.0 0.71 3E-05 25.0 6.7 47 13-60 9-58 (315)
165 1ldj_A Cullin homolog 1, CUL-1 90.9 0.72 3E-05 24.9 6.7 51 11-61 590-640 (760)
166 2oqr_A Sensory transduction pr 90.8 0.29 1.2E-05 27.3 4.6 56 10-67 161-229 (230)
167 1o57_A PUR operon repressor; p 90.8 0.92 3.9E-05 24.3 8.7 88 1-89 1-98 (291)
168 2ra5_A Putative transcriptiona 90.7 0.056 2.3E-06 31.5 0.8 46 21-67 36-82 (247)
169 2dk5_A DNA-directed RNA polyme 90.7 0.4 1.7E-05 26.5 5.2 48 21-68 33-84 (91)
170 2cyy_A Putative HTH-type trans 90.6 0.47 2E-05 26.0 5.5 78 11-92 10-97 (151)
171 3d0s_A Transcriptional regulat 90.5 0.33 1.4E-05 27.0 4.7 45 24-72 177-221 (227)
172 3i4p_A Transcriptional regulat 90.5 0.34 1.4E-05 26.9 4.7 79 12-92 7-96 (162)
173 2pmu_A Response regulator PHOP 90.4 0.57 2.4E-05 25.5 5.8 59 10-70 39-108 (110)
174 2e1c_A Putative HTH-type trans 90.4 0.51 2.1E-05 25.8 5.5 81 11-93 30-118 (171)
175 2dbb_A Putative HTH-type trans 90.4 0.6 2.5E-05 25.4 5.9 82 10-93 11-100 (151)
176 3lmm_A Uncharacterized protein 90.0 0.047 2E-06 32.0 0.0 55 13-69 521-576 (583)
177 1z6r_A MLC protein; transcript 89.8 0.62 2.6E-05 25.3 5.6 37 21-57 27-63 (406)
178 2bgc_A PRFA; bacterial infecti 89.4 0.47 2E-05 26.0 4.8 45 24-72 169-214 (238)
179 1bl0_A Protein (multiple antib 89.2 0.36 1.5E-05 26.7 4.0 55 1-55 1-58 (129)
180 3fx3_A Cyclic nucleotide-bindi 89.0 0.37 1.6E-05 26.6 4.0 44 24-72 178-221 (237)
181 1r7j_A Conserved hypothetical 89.0 0.57 2.4E-05 25.5 4.9 46 25-73 21-66 (95)
182 2z99_A Putative uncharacterize 89.0 0.82 3.4E-05 24.6 5.7 58 10-72 19-82 (219)
183 1z05_A Transcriptional regulat 89.0 0.5 2.1E-05 25.9 4.6 37 21-57 50-86 (429)
184 2p8t_A Hypothetical protein PH 88.9 0.99 4.2E-05 24.1 6.1 66 8-82 18-83 (200)
185 2yu3_A DNA-directed RNA polyme 88.8 1.1 4.8E-05 23.7 6.4 52 8-61 39-90 (95)
186 2w57_A Ferric uptake regulatio 88.0 1 4.3E-05 24.1 5.7 52 12-63 21-77 (150)
187 2jt1_A PEFI protein; solution 88.0 0.92 3.9E-05 24.3 5.5 48 21-68 21-71 (77)
188 2f2e_A PA1607; transcription f 88.0 1.5 6.3E-05 23.1 7.6 70 9-83 25-97 (146)
189 1zar_A RIO2 kinase; serine kin 87.9 1.5 6.3E-05 23.0 6.7 63 8-70 12-76 (282)
190 1okr_A MECI, methicillin resis 87.9 1.3 5.6E-05 23.4 6.2 72 7-82 11-87 (123)
191 2fsw_A PG_0823 protein; alpha- 87.8 1.5 6.5E-05 23.0 6.7 70 9-83 26-100 (107)
192 1fp1_D Isoliquiritigenin 2'-O- 87.7 0.64 2.7E-05 25.2 4.5 37 22-58 60-102 (372)
193 1lva_A Selenocysteine-specific 87.0 1.7 7.2E-05 22.7 6.7 45 24-68 17-61 (258)
194 2fna_A Conserved hypothetical 86.5 1.5 6.2E-05 23.1 5.8 62 5-69 287-350 (357)
195 1kyz_A COMT, caffeic acid 3-O- 86.0 1.1 4.5E-05 23.9 4.9 50 10-59 35-95 (365)
196 1k78_A Paired box protein PAX5 86.0 1.9 8.2E-05 22.4 6.3 49 25-75 49-98 (149)
197 3h0d_A CTSR; protein DNA compl 85.8 0.33 1.4E-05 26.9 2.2 61 25-86 25-92 (155)
198 3oou_A LIN2118 protein; protei 85.8 1.3 5.6E-05 23.4 5.3 43 11-53 8-50 (108)
199 1o5l_A Transcriptional regulat 85.7 0.12 5.3E-06 29.4 0.0 45 24-71 164-208 (213)
200 3k9t_A Putative peptidase; str 85.6 1.3 5.5E-05 23.4 5.2 42 15-57 394-435 (435)
201 3oio_A Transcriptional regulat 85.6 1.5 6.3E-05 23.0 5.5 45 11-55 10-54 (113)
202 2hoe_A N-acetylglucosamine kin 85.5 1.1 4.5E-05 23.9 4.7 36 23-58 32-67 (380)
203 3keo_A Redox-sensing transcrip 85.2 1.2 5E-05 23.6 4.8 50 11-66 19-68 (212)
204 3mn2_A Probable ARAC family tr 85.0 1.3 5.6E-05 23.4 5.0 44 12-55 6-49 (108)
205 3mkl_A HTH-type transcriptiona 84.9 1.5 6.3E-05 23.1 5.2 38 10-47 9-46 (120)
206 2g9w_A Conserved hypothetical 84.9 2.2 9.2E-05 22.1 8.7 81 2-83 3-88 (138)
207 2hzt_A Putative HTH-type trans 84.7 2.2 9.4E-05 22.0 7.8 69 10-83 16-89 (107)
208 2qc0_A Uncharacterized protein 84.1 1 4.3E-05 24.0 4.1 36 24-59 311-346 (373)
209 2vt3_A REX, redox-sensing tran 83.8 1.7 7.3E-05 22.7 5.1 51 11-67 20-70 (215)
210 1mzb_A Ferric uptake regulatio 83.7 2.5 0.0001 21.8 6.4 48 14-61 24-76 (136)
211 2pjp_A Selenocysteine-specific 83.2 1.3 5.6E-05 23.4 4.3 47 21-69 17-63 (121)
212 1sd4_A Penicillinase repressor 82.7 2.7 0.00011 21.5 6.4 73 7-83 11-88 (126)
213 1z7u_A Hypothetical protein EF 82.2 2.8 0.00012 21.4 7.4 70 9-83 23-97 (112)
214 1sfu_A 34L protein; protein/Z- 82.2 2.8 0.00012 21.4 6.3 45 15-59 20-64 (75)
215 3maj_A DNA processing chain A; 81.7 3 0.00012 21.3 5.7 37 23-59 340-376 (382)
216 2o0m_A Transcriptional regulat 81.4 0.24 1E-05 27.7 0.0 47 7-57 21-67 (345)
217 2k9s_A Arabinose operon regula 81.2 2.6 0.00011 21.6 5.2 43 12-54 7-50 (107)
218 1pdn_C Protein (PRD paired); p 80.5 2.1 9E-05 22.1 4.6 47 14-65 26-72 (128)
219 1t6s_A Conserved hypothetical 79.4 3.5 0.00015 20.9 6.1 65 10-82 11-83 (162)
220 3eyy_A Putative iron uptake re 79.2 2.9 0.00012 21.4 4.9 49 13-63 24-77 (145)
221 3gbg_A TCP pilus virulence reg 79.0 3.2 0.00013 21.1 5.1 36 12-47 173-208 (276)
222 1yyv_A Putative transcriptiona 78.8 3.7 0.00016 20.7 6.8 71 8-83 35-110 (131)
223 2htj_A P fimbrial regulatory p 78.5 3.8 0.00016 20.7 6.5 50 12-63 4-53 (81)
224 2hye_C Cullin-4A, CUL-4A; beta 78.2 3.2 0.00014 21.1 4.9 45 11-55 594-640 (759)
225 1xma_A Predicted transcription 78.1 0.77 3.2E-05 24.8 1.7 59 11-72 44-116 (145)
226 1u8b_A ADA polyprotein; protei 78.1 3.3 0.00014 21.0 5.0 41 11-51 79-120 (133)
227 2heo_A Z-DNA binding protein 1 77.6 4 0.00017 20.5 5.4 53 4-57 6-58 (67)
228 2ff4_A Probable regulatory pro 76.7 4.3 0.00018 20.4 6.4 72 10-81 35-118 (388)
229 3dpl_C Cullin-5; ubiquitin, NE 76.5 4.3 0.00018 20.3 5.2 47 10-56 199-247 (382)
230 2dt5_A AT-rich DNA-binding pro 75.2 4.6 0.0002 20.2 5.1 51 1-52 1-56 (211)
231 2zhg_A Redox-sensitive transcr 74.8 4.8 0.0002 20.1 7.1 62 23-90 10-72 (154)
232 2gqq_A Leucine-responsive regu 73.7 0.73 3.1E-05 24.9 0.7 80 11-92 16-106 (163)
233 2k27_A Paired box protein PAX- 73.6 2.8 0.00012 21.5 3.6 39 25-65 42-80 (159)
234 2k4b_A Transcriptional regulat 73.3 3.1 0.00013 21.2 3.8 44 13-58 40-87 (99)
235 3f8b_A Transcriptional regulat 72.7 5.4 0.00023 19.8 5.9 50 10-62 14-71 (116)
236 1tty_A Sigma-A, RNA polymerase 71.8 5.4 0.00022 19.8 4.7 32 16-47 30-61 (87)
237 1ku3_A Sigma factor SIGA; heli 71.6 5.4 0.00023 19.8 4.7 33 18-50 24-60 (73)
238 1oyi_A Double-stranded RNA-bin 71.2 5.8 0.00024 19.6 4.8 53 6-59 13-65 (82)
239 1d5y_A ROB transcription facto 70.9 4 0.00017 20.6 3.9 69 12-82 7-78 (292)
240 2hgc_A YJCQ protein; SR346, st 70.1 3 0.00013 21.2 3.1 71 5-84 4-76 (102)
241 3hhh_A Transcriptional regulat 69.4 3.9 0.00017 20.6 3.6 57 13-72 18-86 (116)
242 2ozu_A Histone acetyltransfera 66.3 7.4 0.00031 19.0 4.6 56 12-73 202-257 (284)
243 2p7v_B Sigma-70, RNA polymeras 66.3 6.4 0.00027 19.3 4.2 33 19-51 20-56 (68)
244 1w5s_A ORC2; CDC6, DNA replica 64.5 8 0.00034 18.7 9.0 22 36-57 350-371 (412)
245 3elk_A Putative transcriptiona 61.3 4.9 0.00021 20.0 2.8 57 11-70 17-85 (117)
246 1uhm_A Histone H1, histone HHO 60.6 6.8 0.00029 19.2 3.4 46 24-69 23-78 (78)
247 3mky_B Protein SOPB; partition 59.2 10 0.00042 18.2 5.1 36 14-49 31-67 (189)
248 3kjx_A Transcriptional regulat 59.2 4.7 0.0002 20.1 2.4 29 18-46 4-32 (344)
249 2jml_A DNA binding domain/tran 57.9 8.1 0.00034 18.7 3.4 55 23-81 4-58 (81)
250 1uxc_A FRUR (1-57), fructose r 57.0 7.9 0.00033 18.8 3.3 22 25-46 1-22 (65)
251 1ust_A Histone H1; DNA binding 56.8 8.6 0.00036 18.6 3.4 62 9-70 10-82 (93)
252 3f2g_A Alkylmercury lyase; MER 56.7 11 0.00047 17.9 5.9 55 18-75 30-87 (220)
253 3h5t_A Transcriptional regulat 55.3 8.5 0.00036 18.6 3.2 34 22-55 7-55 (366)
254 3lsg_A Two-component response 54.3 12 0.00049 17.8 3.8 34 21-54 16-49 (103)
255 1p6r_A Penicillinase repressor 53.2 13 0.00053 17.6 5.7 54 3-58 4-61 (82)
256 1nd9_A Translation initiation 53.2 5.6 0.00024 19.7 2.0 28 25-55 3-30 (49)
257 2v7f_A RPS19, RPS19E SSU ribos 51.8 9.5 0.0004 18.3 3.0 46 23-70 66-125 (150)
258 3jyv_T S19E protein; eukaryoti 51.7 7.5 0.00032 18.9 2.4 31 37-69 94-124 (141)
259 1ufm_A COP9 complex subunit 4; 50.9 13 0.00056 17.4 3.6 50 14-64 21-70 (84)
260 2o3f_A Putative HTH-type trans 50.0 13 0.00053 17.6 3.4 44 12-55 25-70 (111)
261 2qen_A Walker-type ATPase; unk 48.9 15 0.00062 17.2 4.4 37 30-69 306-342 (350)
262 1uss_A Histone H1; DNA binding 48.8 14 0.00057 17.4 3.4 50 24-73 26-86 (88)
263 1tlh_B Sigma-70, RNA polymeras 48.4 7.2 0.0003 19.0 1.9 34 19-52 33-70 (81)
264 2k9l_A RNA polymerase sigma fa 47.3 16 0.00066 17.0 5.0 32 19-50 41-74 (76)
265 1ais_B TFB TFIIB, protein (tra 45.2 17 0.00071 16.8 5.1 45 7-51 51-96 (200)
266 1wy6_A Hypothetical protein ST 44.0 14 0.00059 17.3 2.8 53 2-54 86-141 (172)
267 3bil_A Probable LACI-family tr 43.8 3.9 0.00017 20.6 0.0 29 18-46 2-30 (348)
268 2a6c_A Helix-turn-helix motif; 43.7 14 0.00058 17.3 2.8 49 22-88 29-77 (83)
269 1hst_A Histone H5; chromosomal 43.7 18 0.00075 16.7 4.7 62 9-70 10-81 (90)
270 2qby_B CDC6 homolog 3, cell di 43.3 17 0.00072 16.8 3.2 46 28-73 307-361 (384)
271 3cuq_B Vacuolar protein-sortin 42.8 19 0.00078 16.6 5.2 63 70-133 111-177 (218)
272 2bnm_A Epoxidase; oxidoreducta 42.4 17 0.00073 16.8 3.1 47 22-86 21-67 (198)
273 2wus_R RODZ, putative uncharac 40.9 17 0.00071 16.8 2.9 26 22-47 18-43 (112)
274 2hsg_A Glucose-resistance amyl 40.1 17 0.00071 16.8 2.8 21 25-45 3-23 (332)
275 3e3m_A Transcriptional regulat 39.7 5 0.00021 20.0 0.0 27 21-47 9-35 (355)
276 1tns_A MU-transposase; DNA-bin 38.2 19 0.0008 16.5 2.8 50 25-75 5-59 (76)
277 3iwf_A Transcription regulator 38.0 22 0.00093 16.2 3.1 45 11-55 20-66 (107)
278 3mzy_A RNA polymerase sigma-H 37.1 23 0.00096 16.1 3.8 12 121-132 121-132 (164)
279 3eyi_A Z-DNA-binding protein 1 36.8 23 0.00097 16.1 3.8 45 12-58 14-59 (72)
280 2vxz_A Pyrsv_GP04; viral prote 36.5 23 0.00098 16.0 7.4 80 3-84 5-85 (165)
281 1rr7_A Middle operon regulator 36.0 24 0.001 16.0 3.7 18 116-133 84-101 (129)
282 3hh0_A Transcriptional regulat 35.7 24 0.001 15.9 4.5 62 24-90 4-66 (146)
283 2ve8_A FTSK, DNA translocase F 34.6 25 0.0011 15.8 4.8 39 23-61 23-61 (73)
284 1xmk_A Double-stranded RNA-spe 34.5 25 0.0011 15.8 6.5 61 7-69 10-71 (79)
285 2rqp_A Heterochromatin protein 34.1 9.7 0.00041 18.3 0.7 45 28-72 36-87 (88)
286 3hot_A Transposable element ma 33.8 26 0.0011 15.8 6.8 70 7-84 7-83 (345)
287 3dn7_A Cyclic nucleotide bindi 33.4 7.2 0.0003 19.0 0.0 19 29-47 173-191 (194)
288 2ict_A Antitoxin HIGA; helix-t 32.8 27 0.0011 15.7 3.3 23 24-46 21-43 (94)
289 2esh_A Conserved hypothetical 32.5 24 0.001 15.9 2.6 28 35-62 46-73 (118)
290 1ghc_A GH1; chromosomal protei 32.3 12 0.0005 17.7 1.0 32 37-68 42-75 (75)
291 1yg2_A Gene activator APHA; vi 31.3 28 0.0012 15.5 3.0 52 7-63 3-62 (179)
292 3gp4_A Transcriptional regulat 31.2 29 0.0012 15.5 4.7 63 24-90 2-64 (142)
293 1xsv_A Hypothetical UPF0122 pr 31.1 29 0.0012 15.5 5.4 34 12-47 31-64 (113)
294 3cec_A Putative antidote prote 31.0 29 0.0012 15.5 2.7 24 23-46 30-53 (104)
295 3fym_A Putative uncharacterize 30.6 29 0.0012 15.4 3.1 25 22-46 14-38 (130)
296 3cuq_A Vacuolar-sorting protei 30.4 29 0.0012 15.4 5.2 13 71-83 113-125 (234)
297 2jpc_A SSRB; DNA binding prote 30.0 30 0.0013 15.4 3.0 32 13-48 6-37 (61)
298 1y9q_A Transcriptional regulat 29.4 31 0.0013 15.3 2.9 44 23-85 23-66 (192)
299 2eby_A Putative HTH-type trans 28.7 31 0.0013 15.2 2.7 24 23-46 23-46 (113)
300 1r8d_A Transcription activator 28.6 32 0.0013 15.2 4.2 61 24-88 2-62 (109)
301 1rp3_A RNA polymerase sigma fa 28.6 32 0.0013 15.2 3.7 29 23-51 114-142 (239)
302 2k6x_A Sigma-A, RNA polymerase 28.5 32 0.0013 15.2 5.0 47 7-54 7-58 (72)
303 1q06_A Transcriptional regulat 28.2 32 0.0014 15.2 4.1 58 25-86 1-58 (135)
304 2nu8_B SCS-beta, succinyl-COA 28.0 12 0.00052 17.6 0.4 35 40-74 30-70 (388)
305 3b7h_A Prophage LP1 protein 11 27.6 33 0.0014 15.1 3.3 45 23-85 19-63 (78)
306 1dw9_A Cyanate lyase; cyanate 27.5 33 0.0014 15.1 4.2 43 2-45 5-47 (156)
307 1zx4_A P1 PARB, plasmid partit 27.2 34 0.0014 15.1 4.4 25 25-49 25-49 (192)
308 1s7o_A Hypothetical UPF0122 pr 27.1 34 0.0014 15.1 5.1 34 12-47 28-61 (113)
309 1qpz_A PURA, protein (purine n 27.1 34 0.0014 15.1 3.2 20 26-45 2-21 (340)
310 2e1n_A PEX, period extender; c 27.1 34 0.0014 15.1 6.2 61 13-73 39-110 (138)
311 3c1d_A Protein ORAA, regulator 26.5 35 0.0015 15.0 4.7 44 12-58 10-66 (159)
312 3k7a_M Transcription initiatio 26.5 17 0.00071 16.8 0.9 43 8-50 169-212 (345)
313 1b0n_A Protein (SINR protein); 26.4 35 0.0015 15.0 3.0 23 24-46 14-36 (111)
314 1r71_A Transcriptional repress 26.3 33 0.0014 15.2 2.3 25 25-49 53-77 (178)
315 2o8x_A Probable RNA polymerase 26.2 35 0.0015 15.0 5.1 35 12-48 21-55 (70)
316 3ke2_A Uncharacterized protein 25.8 36 0.0015 14.9 5.9 60 6-68 16-82 (117)
317 3g7d_A PHPD; non heme Fe(II) d 25.4 36 0.0015 14.9 3.5 24 23-46 242-265 (443)
318 2b5a_A C.BCLI; helix-turn-heli 24.8 37 0.0016 14.8 3.0 23 24-46 23-45 (77)
319 2a6h_F RNA polymerase sigma fa 24.5 38 0.0016 14.8 4.4 20 22-41 283-302 (423)
320 2jn6_A Protein CGL2762, transp 24.1 38 0.0016 14.7 3.5 30 24-53 23-52 (97)
321 3h5o_A Transcriptional regulat 24.0 13 0.00056 17.5 0.0 23 24-46 4-26 (339)
322 3dbi_A Sugar-binding transcrip 23.8 14 0.00057 17.4 0.0 23 24-46 3-25 (338)
323 1l9z_H Sigma factor SIGA; heli 23.8 39 0.0016 14.7 4.7 20 21-40 297-316 (438)
324 1dlj_A UDP-glucose dehydrogena 23.3 31 0.0013 15.3 1.8 47 27-73 221-268 (402)
325 2r0q_C Putative transposon TN5 23.1 40 0.0017 14.6 3.5 12 121-132 172-183 (209)
326 1jye_A Lactose operon represso 23.0 14 0.0006 17.3 0.0 23 24-46 3-25 (349)
327 2fok_A R.FOKI, FOKI restrictio 22.9 37 0.0016 14.8 2.1 62 27-88 213-284 (579)
328 1g4d_A Repressor protein C; pr 22.7 37 0.0016 14.8 2.1 49 24-73 4-57 (69)
329 2kpj_A SOS-response transcript 22.4 42 0.0017 14.5 3.2 25 22-46 20-44 (94)
330 3c57_A Two component transcrip 22.3 42 0.0018 14.5 3.8 39 10-52 32-74 (95)
331 3dfg_A Xcrecx, regulatory prot 21.9 42 0.0018 14.5 5.3 42 12-56 22-66 (162)
332 1mv8_A GMD, GDP-mannose 6-dehy 21.6 26 0.0011 15.7 1.1 47 27-73 227-276 (436)
333 2dql_A PEX protein; circadian 21.5 43 0.0018 14.4 6.7 62 10-71 24-96 (115)
334 1utx_A CYLR2; DNA-binding prot 21.5 43 0.0018 14.4 2.9 22 24-45 14-35 (66)
335 2dul_A N(2),N(2)-dimethylguano 21.1 44 0.0019 14.4 4.5 61 10-70 305-368 (378)
336 3g5g_A Regulatory protein; tra 21.0 44 0.0019 14.4 3.0 23 23-45 40-62 (99)
337 2zfw_A PEX; five alpha-helices 20.8 45 0.0019 14.3 5.9 61 13-73 49-120 (148)
338 1x3u_A Transcriptional regulat 20.8 45 0.0019 14.3 3.7 35 11-49 22-56 (79)
339 3jvd_A Transcriptional regulat 20.7 17 0.00072 16.8 0.0 26 22-47 4-29 (333)
340 1gdt_A GD resolvase, protein ( 20.6 45 0.0019 14.3 3.3 42 36-81 43-85 (183)
341 3hug_A RNA polymerase sigma fa 20.6 45 0.0019 14.3 5.3 33 13-47 44-76 (92)
342 1fse_A GERE; helix-turn-helix 20.1 46 0.0019 14.3 3.7 35 11-49 17-55 (74)
343 1jko_C HIN recombinase, DNA-in 20.1 46 0.0019 14.3 2.1 21 25-45 22-42 (52)
No 1
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=100.00 E-value=6.5e-37 Score=237.74 Aligned_cols=128 Identities=27% Similarity=0.443 Sum_probs=118.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHH
Q ss_conf 976456899999999998559-8633599999981997899999999993259057315654540002372126099999
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~ 79 (144)
||||++++||||+|++||.++ ++++|+++||+++++|++||+|||+.|+++|||+|+||++|||+|+++|++|||+||+
T Consensus 20 Mkls~k~~YAlr~L~~LA~~~~~~~vs~~eIAe~~~ip~~~L~kIl~~L~kaGlv~S~rG~~GGy~Lak~p~~ItL~dI~ 99 (159)
T 3lwf_A 20 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDII 99 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTCBHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCCCHHHHH
T ss_conf 87876586999999999808899819599999878909999999999983279388368888885455693028999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHHH
Q ss_conf 997187631114688778887656644799999999999999841799999915898
Q gi|254780620|r 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 (144)
Q Consensus 80 ~aie~~~~~~~C~~~~~~~C~~~~~c~~~~~~~~~~~~~~~~L~~~TL~dl~~~~~~ 136 (144)
+++||+..+++|..+ ..|.++.+|.++++++.+.|+++||+||+++...
T Consensus 100 ~aveg~~~~~~c~~~--------~~c~~~~~~~~i~~~~~~~L~~~TL~dL~~~~~~ 148 (159)
T 3lwf_A 100 RTLEGPIVLVESMED--------EEAAQRELWTRMRNAVRDVLDQTTLSDLLKHSTD 148 (159)
T ss_dssp HHHSCCCCSCCCCTT--------CCHHHHHHHHHHHHHHHHHHHHCBHHHHHHCCSC
T ss_pred HHHCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHH
T ss_conf 998587776578999--------5067999999999999999875879999708775
No 2
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=100.00 E-value=2.9e-35 Score=228.01 Aligned_cols=134 Identities=24% Similarity=0.299 Sum_probs=119.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH
Q ss_conf 97645689999999999855986335999999819978999999999932590573156545400023721260999999
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~ 80 (144)
||+|++++||+|+|+|||.++++++|+++||+.+++|++||+|||+.|+++|||+|+||+ |||+|+++|++|||+|||+
T Consensus 7 Mkls~~~~yAl~~L~~La~~~~~~~s~~~ia~~~~i~~~~l~kil~~L~kaGlv~s~rG~-GGy~L~r~p~~ItL~dI~~ 85 (149)
T 1ylf_A 7 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP-GGAGLLKDLHEITLLDVYH 85 (149)
T ss_dssp -CCCHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGGCBHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC-CCCEECCCHHHCCHHHHHH
T ss_conf 767846979999999999689986669999987890999999999999988986731699-9853048875558999999
Q ss_pred HHCCCCC--CCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCHHHHHHCHH
Q ss_conf 9718763--11146887788876566--4479999999999999984179999991589
Q gi|254780620|r 81 ATEESFF--VAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 (144)
Q Consensus 81 aie~~~~--~~~C~~~~~~~C~~~~~--c~~~~~~~~~~~~~~~~L~~~TL~dl~~~~~ 135 (144)
|+|++.. ...|.......|++... |.++++|.++++.+.++|+++||+||+++..
T Consensus 86 ai~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~L~~~TL~dL~~~~~ 144 (149)
T 1ylf_A 86 AVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQSAMEEVLRNITMGQLFETLQ 144 (149)
T ss_dssp HHCC------------------CHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHHHHHC
T ss_pred HHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 98154653212203679988854420079999999999999999983798999999799
No 3
>1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=100.00 E-value=2.5e-33 Score=216.53 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHH
Q ss_conf 64568999999999985598633599999981997899999999993259057315654540002372126099999997
Q gi|254780620|r 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 (144)
Q Consensus 3 is~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~ai 82 (144)
+|++++||+|+|+|||.+ +++|+++||+++++|++||+|||++|+++|||+|++|+ |||+|+++|++|||+||++++
T Consensus 4 is~r~~~Av~~L~~La~~--~~~ss~~IAe~~~i~~~~l~kIl~~L~kaGlV~S~~g~-GG~~Lar~p~~Itl~dI~~av 80 (145)
T 1xd7_A 4 INSRLAVAIHILSLISMD--EKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGV-PGASLKKDPADISLLEVYRAV 80 (145)
T ss_dssp --CHHHHHHHHHHHHHTC--SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSS-SSCEESSCGGGCBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCC-CCCCCCCCHHHCCHHHHHHHH
T ss_conf 227999999999998649--99899999988891999999999999878907820899-983011898986799999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHH
Q ss_conf 187631114688778887656--64479999999999999984179999991589
Q gi|254780620|r 83 EESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 (144)
Q Consensus 83 e~~~~~~~C~~~~~~~C~~~~--~c~~~~~~~~~~~~~~~~L~~~TL~dl~~~~~ 135 (144)
|++..++.|..+....|+... .|.++.+|.++++++.++|+++||+||+++..
T Consensus 81 e~~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~L~~~TL~dLi~~i~ 135 (145)
T 1xd7_A 81 QKQEELFAVHENPNPKCPVGKKIQNALDETFESVQRAMENELASKSLKDVMNHLF 135 (145)
T ss_dssp CC-----------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHCC---
T ss_pred CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 3885323302667888875642158999999999999999984698999998898
No 4
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum}
Probab=100.00 E-value=3.3e-32 Score=209.96 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 45689999999999855986335999999819978999999999932590573156545400023721260999999971
Q gi|254780620|r 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 4 s~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
+..+.+|+|+|+|||.++++++|+++||+.+++|++||+|||+.|+++|||+|+||++|||+|+|+|++|||+|||+++|
T Consensus 8 ~~~f~iAl~~L~~La~~~~~~~ss~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~La~~~~~Itl~dI~~ave 87 (162)
T 3k69_A 8 KLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALADMNLGDLYDLTI 87 (162)
T ss_dssp THHHHHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGGGSBHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHCCHHHHHHHHC
T ss_conf 32999999999999838998666999998889099999999999964796783488999740027951249999999984
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCC--------HHHHHHHHHHHHHHHHHHCCHHHHHHCH
Q ss_conf 8763111468-8778887656644--------7999999999999998417999999158
Q gi|254780620|r 84 ESFFVAECFA-SHKIDCPLVGSCG--------LTSVLRKALNAFFDVLTQYSIECLVRNR 134 (144)
Q Consensus 84 ~~~~~~~C~~-~~~~~C~~~~~c~--------~~~~~~~~~~~~~~~L~~~TL~dl~~~~ 134 (144)
++..+..|.. .....|.....|. ++.+|.++++.+.++|+++||+||+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~c~v~~~~~~~l~~~~~~~~~~~~~~L~~~TL~dL~~~~ 147 (162)
T 3k69_A 88 PPTISYARFITGPSKTDEQADQSPIAANISETLTDLFTVADRQYRAYYHQFTMADLQADL 147 (162)
T ss_dssp CCCSCCGGGCCSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 741246676058765566778886431478999999999999999999179799999989
No 5
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=97.63 E-value=0.00022 Score=45.64 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=58.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEECCCCCCCCEECCCHHHCCHHHHHHHHCC
Q ss_conf 9999999855986335999999819978999999999932590-5731565454000237212609999999718
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATEE 84 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agl-i~S~rG~~GGy~Lak~~~~Itl~dI~~aie~ 84 (144)
+++|-.|+ .++++|-++||+.+++|+.-+-|-++.|++.|| |+|.+++ ||+|..+++-+....+.....+
T Consensus 8 ~~ll~~L~--~g~~~SGe~la~~L~iSR~aVwk~i~~L~~~G~~I~s~~~~--GY~l~~~~~~l~~~~i~~~~~~ 78 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGK--GYSLPEPIQLLNAKQILGQLDG 78 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTT--EEECSSCCCCCCHHHHHHTCCS
T ss_pred HHHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCC--CEEECCCCCCCCHHHHHHCCCC
T ss_conf 99999972--69959799999987979999999999999779729997896--7598985353799999623579
No 6
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=97.47 E-value=0.00024 Score=45.49 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEECCCCCCCCEECCCH
Q ss_conf 689999999999855986335999999819978999999999932590-57315654540002372
Q gi|254780620|r 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 (144)
Q Consensus 6 ~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agl-i~S~rG~~GGy~Lak~~ 70 (144)
+.+=-.++|-+|.. .++++|+.+||+..++|+.-+++=++.|.+.|+ |.+. +|||+|...+
T Consensus 19 k~eR~~~Il~~L~~-~~~~vs~~eLa~~l~vS~~TIrrdi~~L~~~G~~i~~~---~gGy~L~~~~ 80 (187)
T 1j5y_A 19 RQERLKSIVRILER-SKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT---PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHHH-CSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE---TTEEECCTTT
T ss_pred HHHHHHHHHHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---CCCEEECCCC
T ss_conf 99999999999998-59967699999997989999999999999779968984---6988967753
No 7
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=97.31 E-value=0.00069 Score=42.74 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 8999999999985598633599999981997899999999993259057315654540002372
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
.+=|+.+|-+++..+ ++.+..|||+..++|++-+.++++.|...|||.- .++|.|+|.-..
T Consensus 7 l~Ral~IL~~~a~~~-~~~tl~eia~~lglpksT~~Rll~tL~~~G~l~~--~~~~~Y~lG~~~ 67 (249)
T 1mkm_A 7 LKKAFEILDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR--KKDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--CTTSCEEECTHH
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--CCCCCHHHHHHH
T ss_conf 999999999997389-9989999999879199999999999997798653--255320132465
No 8
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=97.22 E-value=0.00099 Score=41.82 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCH
Q ss_conf 999999985598633599999981997899999999993259057315-654540002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~ 70 (144)
++++..|+. ++.++.+||+..+++++-+.+-|+.|+++|+|++.| |+.==|+|+.+.
T Consensus 29 l~Il~~L~~---~~~~v~el~~~l~~s~s~vS~HL~~L~~aglV~~~r~G~~~~Y~l~~~~ 86 (106)
T 1r1u_A 29 IRIMELLSV---SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIH 86 (106)
T ss_dssp HHHHHHHHH---CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH
T ss_pred HHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHH
T ss_conf 999999982---9967999999876586589999999998893489988788999988399
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=97.15 E-value=0.00095 Score=41.93 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCC---EECCCHHHCCHHHHHHHHC
Q ss_conf 8999999999985598633599999981997899999999993259057315654540---0023721260999999971
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV---RLCRPADQITILDVVKATE 83 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy---~Lak~~~~Itl~dI~~aie 83 (144)
+.+-..++..|..+ +++++.+||+..+++++.+.+++..|.+.|+|...+...|++ ..+.+|+++ +.++...++
T Consensus 19 t~~e~~v~~~L~~~--~~~t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~~~~~~~~~~~~~~~~~~e~-l~~i~~~i~ 95 (109)
T 1sfx_A 19 KPSDVRIYSLLLER--GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKV-LKEFKSSIL 95 (109)
T ss_dssp CHHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHH-HHHHHHHHH
T ss_conf 99999999999804--888799999997567018999999999599979874257886554336680016-899999999
Q ss_pred C
Q ss_conf 8
Q gi|254780620|r 84 E 84 (144)
Q Consensus 84 ~ 84 (144)
.
T Consensus 96 ~ 96 (109)
T 1sfx_A 96 G 96 (109)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 10
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=97.02 E-value=0.0022 Score=39.74 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 999999985598633599999981997899999999993259057315-6545400023721260999999971
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
++++..|+. ++..++.+|++..+++++-+++-|+.|+++|+|++.| |+.==|+++.+ .+.+++..+.
T Consensus 27 l~Il~~L~~--~~~~~v~eLa~~l~~s~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~~----~i~~l~~~L~ 94 (99)
T 3cuo_A 27 LLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNE----AVNAIIATLK 94 (99)
T ss_dssp HHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCH----HHHHHHHHHH
T ss_pred HHHHHHHHC--CCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHH----HHHHHHHHHH
T ss_conf 999999858--9990799977455859879999999999889416998889999998969----9999999998
No 11
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.01 E-value=0.0018 Score=40.29 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 999999985598633599999981997899999999993259057315-6545400023721260999999971
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
++++..|+ +++.++.+|++..++|++-+.+-|+.|+++|+|.+.| |+.==|+|+.+. +.++++.+.
T Consensus 26 l~Il~~L~---~~~~~v~ela~~l~~s~~tvS~HL~~L~~aglV~~~r~G~~~~Y~l~~~~----~~~~~~~L~ 92 (98)
T 3jth_A 26 LQILCMLH---NQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE----VKAMIKLLH 92 (98)
T ss_dssp HHHHHHTT---TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH----HHHHHHHHH
T ss_pred HHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHH----HHHHHHHHH
T ss_conf 99999997---29937999999988595678899999998894269987689999988599----999999999
No 12
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=96.91 E-value=0.0018 Score=40.37 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCC
Q ss_conf 9999999985598633599999981997899999999993259057315-65454
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGG 63 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GG 63 (144)
-+++|-.|+ ++|.|+.+||+..++|++-+++-|+.|.++|+|++.+ |+.||
T Consensus 22 R~~IL~~L~---~~~~t~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~~~~~~~g 73 (192)
T 1uly_A 22 RRKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGN 73 (192)
T ss_dssp HHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETT
T ss_pred HHHHHHHHH---HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 999999998---2996799999998919889999999998889828998723489
No 13
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=96.90 E-value=0.0014 Score=40.99 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454----000237212
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQ 72 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~ 72 (144)
+++|.+|..+ ++.+..+||+..+++++-+.+.+..|.++|+|+..+...++ |+|.....+
T Consensus 19 ~~IL~~L~~~--~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~ 82 (100)
T 1ub9_A 19 LGIMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHH
T ss_conf 9999998518--998399999998919989999999998589069987488897310035999999
No 14
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.88 E-value=0.0027 Score=39.27 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECC
Q ss_conf 999999985598633599999981997899999999993259057315-6545400023
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCR 68 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak 68 (144)
++++..|+. ++.++.+||+..+++++-+.+-|+.|+++|+|.+.| |+.-=|+|..
T Consensus 24 l~Il~~L~~---~~~~v~eLa~~l~is~s~vS~HL~~L~~aGLV~~~r~Gr~~~Y~l~~ 79 (114)
T 2oqg_A 24 WEILTELGR---ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALG 79 (114)
T ss_dssp HHHHHHHHH---SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCEEEEEECH
T ss_conf 999999981---99289999988888988999999999988988036448988999785
No 15
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.86 E-value=0.0014 Score=40.94 Aligned_cols=61 Identities=8% Similarity=0.153 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 8999999999985598633599999981997899999999993259057315654540002372
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
.+=|+.+|-+++.+ +.+.+..|||+..++|++-+.++++.|...|||.- -..|.|+|.-..
T Consensus 22 l~Ral~ILe~l~~~-~~~~~l~eia~~lgl~~sT~~RlL~tL~~~G~l~~--~~~g~Y~lG~~~ 82 (260)
T 2o0y_A 22 VTRVIDLLELFDAA-HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS--RADGSYSLGPEM 82 (260)
T ss_dssp HHHHHHHHTTCBTT-BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE--CTTSCEEECHHH
T ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--ECCCCEECCHHH
T ss_conf 99999999999747-99989999999979199999999999997887898--055426537899
No 16
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=96.86 E-value=0.0044 Score=38.03 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=45.7
Q ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHH
Q ss_conf 598633-59999998199789999999999325905731565454000237212609999
Q gi|254780620|r 20 HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 (144)
Q Consensus 20 ~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI 78 (144)
.+|... |..+||+..++|+..+++.++.|...|+|.+.+|. |+..+.++..+.....
T Consensus 30 ~~G~~LPser~La~~~~vSr~tVr~Al~~L~~~Gli~~~~g~--G~~V~~~~~~~~~~~~ 87 (126)
T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK--GTFITGNTASVKNSNQ 87 (126)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT--EEEECSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--EEEEECCCCHHHHHHH
T ss_conf 992999049999999798989999999999988927997381--5898079616568899
No 17
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.86 E-value=0.0031 Score=38.91 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHHH
Q ss_conf 999999985598633599999981997899999999993259057315-654540002372126099999997
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKAT 82 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~ai 82 (144)
++++..|+ +++.++.+|++..+++++-+.+-|+.|+++|+|.+.| |+.==|+|+.+ .+.++++.+
T Consensus 49 l~Il~~L~---~~~~~v~ela~~l~~s~stvS~HL~~L~~aGlV~~~r~Gr~~~Y~l~~~----~i~~ll~~~ 114 (122)
T 1r1t_A 49 LRLLSLLA---RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH----HIVALYQNA 114 (122)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH----HHHHHHHHH
T ss_pred HHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECHH----HHHHHHHHH
T ss_conf 99999998---2997699999998919888999999999889336898737899998929----999999999
No 18
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.85 E-value=0.0041 Score=38.17 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCH
Q ss_conf 999999985598633599999981997899999999993259057315-654540002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~ 70 (144)
++++..|+.+ +..++.+||+..+++++-+.+-|+.|+.+|+|.+.| |+.==|+|+.+.
T Consensus 45 l~Il~~L~~~--~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlV~~~r~Gr~~~Y~l~~~~ 103 (122)
T 1u2w_A 45 AKITYALCQD--EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH 103 (122)
T ss_dssp HHHHHHHHHS--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHH
T ss_conf 9999999878--8927999999988873269999999998890489998788999988599
No 19
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=96.82 E-value=0.0031 Score=38.89 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999855986335999999819978999999999932590573156545
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
.++|.+|+.++++++|..+||+..+++++.+.+++..|.+.|||+..+.+.-
T Consensus 37 ~~vL~~l~~~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~~D 88 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKD 88 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999848999959999999989788589999999988777886630579
No 20
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=96.80 E-value=0.0038 Score=38.40 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCC
Q ss_conf 7645689999999999855986335999999819978999999999932590573156545400023721260
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~It 74 (144)
.||...+==|.++..|... ++.++..+||+.++++++-+.+.+++|.+.|||+-. ++||+.|...-.++-
T Consensus 3 ~ls~~~E~YL~~Iy~l~~~-~~~~~~~~lA~~L~vs~~sv~~~l~~L~~~Glv~~~--~~~~i~LT~~G~~~A 72 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEEE-GVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVA--GDRHLELTEKGRALA 72 (230)
T ss_dssp TTSSHHHHHHHHHHHHHHH-TSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCCCEEECHHHHHHH
T ss_conf 6656799999999999864-997619999998788928999999999888898981--898889888999999
No 21
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=96.76 E-value=0.0025 Score=39.41 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 568999999999985598633599999981997899999999993259057315654540002372126
Q gi|254780620|r 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 5 ~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
...+==|.++..|... ++.++..+||+..+++++-+.+.++.|.+.|+|. +.++||+.|.....++
T Consensus 4 ~s~EdYL~~I~~l~~~-~~~v~~~dlA~~L~vs~~sv~~~lk~L~~~GlI~--~~~~~~i~LT~~G~~~ 69 (142)
T 1on2_A 4 PSMEMYIEQIYMLIEE-KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI--YEKYRGLVLTSKGKKI 69 (142)
T ss_dssp HHHHHHHHHHHHHHHH-HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--EETTTEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCC--CCCCCCEEECHHHHHH
T ss_conf 5399999999999853-7988699999996988789999999998579844--0699866777889999
No 22
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.0048 Score=37.79 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCC
Q ss_conf 7645689999999999855986335999999819978999999999932590573156545400023721260
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~It 74 (144)
.+|.+.+==|.++..|. ..++.+++.+||+..+++++-+.+.+++|.+.|||+-. ..|+.|...-..+-
T Consensus 10 ~ls~~ee~YL~aI~~l~-~~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~~---~~gi~LT~~G~~~A 78 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYN-DSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK---EDGVWITNNGTRSI 78 (139)
T ss_dssp -CCHHHHHHHHHHHHHH-TTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE---CCCCEECHHHHHHH
T ss_conf 37889999999999999-75998669999999688907999999999988995450---47715788899999
No 23
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=96.75 E-value=0.0028 Score=39.12 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999999998559863359999998199789999999999325905731565
Q gi|254780620|r 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 (144)
Q Consensus 8 ~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~ 60 (144)
+.-.+++.+|..++ +++|..+||+..+++++.+.+++..|.+.|||...+.+
T Consensus 21 ~~~~~iL~~L~~~~-~~~t~~eia~~~~~~~~tvs~~l~~L~~~GlV~r~~~~ 72 (109)
T 2d1h_A 21 DTDVAVLLKMVEIE-KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHHHHHHHHHHC-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 99999999999759-89899999999897885899999999988997985178
No 24
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.73 E-value=0.003 Score=38.97 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCH
Q ss_conf 999999985598633599999981997899999999993259057315-654540002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~ 70 (144)
+++|..|+. ++.++.+||+..+++++-+.+-|+.|+++|+|.+.| |+.==|+|..++
T Consensus 21 ~~Il~~L~~---~~~~v~ela~~l~~s~~tvS~HL~~L~~aGlV~~~r~Gr~~~Y~l~~~~ 78 (118)
T 3f6o_A 21 RAVLGRLSR---GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP 78 (118)
T ss_dssp HHHHHHHHT---CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEECHHH
T ss_conf 999999980---9947999999989199999999999998898626765888899988799
No 25
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=96.70 E-value=0.0075 Score=36.63 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++|.+|+.+++.++|..+||+..+++++-+.+++..|.+.|||...+.+.-+
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~glv~r~~~~~D~ 86 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf 99999998359999699999999896887899999999978897851678998
No 26
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=96.70 E-value=0.0043 Score=38.05 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 999999985598633599999981997899999999993259057315-6545400023721260999999971
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
++++..|+.+ ++.++.+|++..+++++-+++-|+.| ++|+|++.| |+.==|+|+.+. +.++++.++
T Consensus 30 l~Il~~L~~~--~~~~v~el~~~l~~s~stvS~HL~~L-~aglV~~~r~G~~~~Y~l~~~~----i~~l~~~L~ 96 (99)
T 2zkz_A 30 LKIVNELYKH--KALNVTQIIQILKLPQSTVSQHLCKM-RGKVLKRNRQGLEIYYSINNPK----VEGIIKLLN 96 (99)
T ss_dssp HHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHH-BTTTBEEEEETTEEEEECCCHH----HHHHHHHHC
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEEECCEEEEEECCHH----HHHHHHHHH
T ss_conf 9999999778--99279998998884976999999999-9298738987588999989099----999999998
No 27
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=96.69 E-value=0.0084 Score=36.35 Aligned_cols=70 Identities=10% Similarity=0.099 Sum_probs=52.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHHHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--00023721260999999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILDVVK 80 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~dI~~ 80 (144)
..+|.+|..++++++|..+||+..+++++.+.+++..|.+.|||.-.+.+.-+ +.+.-.++-..+.+-+.
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~~Le~~glI~r~~~~~D~R~~~l~LT~kG~~~~~~~~ 115 (189)
T 3nqo_A 44 YMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 999999984789990999999998968869999999999879863743267654013467888999999999
No 28
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=96.68 E-value=0.0042 Score=38.12 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=44.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC-C-----CEECCCH
Q ss_conf 9999999855986335999999819978999999999932590573156545-4-----0002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-G-----VRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G-G-----y~Lak~~ 70 (144)
.++|..|+. ++.|+.+||+.+++|++-+.+-|+.|.++|+|++.+-..| | |+|..+.
T Consensus 18 ~~Il~~L~~---~~~~~~ela~~l~is~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~ 80 (202)
T 2p4w_A 18 RRILFLLTK---RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCC
T ss_conf 999999973---999899999998909989999999999789517997642789617999807876
No 29
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.67 E-value=0.0053 Score=37.53 Aligned_cols=68 Identities=24% Similarity=0.267 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHHH
Q ss_conf 999999985598633599999981997899999999993259057315-654540002372126099999997
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKAT 82 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~ai 82 (144)
++++..|. +++.++.+|++..++|.+-+.+-|+.|+++|+|.+.| |+.==|+|+.+. --.+.+.++.+
T Consensus 28 l~Il~~L~---~~~~~v~eLa~~l~is~s~vS~HL~~L~~aglV~~~r~G~~~~Y~l~~~~-i~~l~~~l~~~ 96 (108)
T 2kko_A 28 LQILDLLA---QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGED-VARLFALVQVV 96 (108)
T ss_dssp HHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHH-HHHHHHHHHHH
T ss_pred HHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECHHH-HHHHHHHHHHH
T ss_conf 99999998---09957999999989098889999999998893479988688999989199-99999999999
No 30
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=96.57 E-value=0.0073 Score=36.71 Aligned_cols=61 Identities=25% Similarity=0.121 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--CCCCCCEECCCHH
Q ss_conf 9999999985598633599999981997899999999993259057315--6545400023721
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPAD 71 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r--G~~GGy~Lak~~~ 71 (144)
.-+++.+|..++ +|+|..+||+..+++++-+.+++..|.+.|+|...+ |-...|.+.-+|.
T Consensus 28 ~~~il~~L~~~~-~p~t~~eLa~~l~is~s~vs~~l~~L~~~GlV~r~~~~~drr~~~~~lt~~ 90 (152)
T 1ku9_A 28 VGAVYAILYLSD-KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGF 90 (152)
T ss_dssp HHHHHHHHHHCS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHH
T ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHH
T ss_conf 999999999769-892999999998968857999999999889989853798887568774868
No 31
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=96.56 E-value=0.0015 Score=40.81 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCH
Q ss_conf 999999985598633599999981997899999999993259057315-654540002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~ 70 (144)
++++..|+. ++.++.+|++..++|.+-+.+-|+.|+++|+|.+.| |+.=-|+++.+.
T Consensus 24 l~Il~~L~~---~~~~v~ela~~lgis~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~~~ 81 (118)
T 2jsc_A 24 CRILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSH 81 (118)
T ss_dssp HHHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHH
T ss_pred HHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCHH
T ss_conf 999999981---9928999999989299999999999998896279988798999978199
No 32
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=96.55 E-value=0.0057 Score=37.34 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 764568999999999985598633599999981997899999999993259057315654540002372126
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
.+|...+==|.++..|... ++.++..+||+.++++++-+.+.+++|.+.|+|+-.+ +||+.|...-..+
T Consensus 3 ~l~~~~E~YL~~Iy~L~e~-~~~v~~~~iA~~L~vs~~svt~~l~~L~~~Gli~~~~--~~~v~LT~~G~~~ 71 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEE-GVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVAS--DRSLQMTPTGRTL 71 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT--TSBEEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--CCCEEECHHHHHH
T ss_conf 6761399999999999964-9965199999996899179999999999889989728--9787989889999
No 33
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=96.51 E-value=0.0035 Score=38.56 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
..+|.+|+.+++++++..+||+..+++++.+.+++..|.+.|||.-.+.+.-+
T Consensus 40 ~~iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~glI~r~~~~~D~ 92 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99999998289998789999999798873699999999978977984037899
No 34
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=96.50 E-value=0.0049 Score=37.75 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 68999999999985598633599999981997899999999993259057315654540002372126
Q gi|254780620|r 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 6 ~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
..+=|+.+|-+++.++ ++.+..|||+..++|++-+.++++.|...|||.-. .|+|+|.-..-.+
T Consensus 19 sl~Ral~ILe~la~~~-~~lsl~eia~~l~l~kst~~RlL~tL~~~G~l~~~---~~~Y~lG~~~~~l 82 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRN-QRRTLSDVARATDLTRATARRFLLTLVELGYVATD---GSAFWLTPRVLEL 82 (265)
T ss_dssp HHHHHHHHHHTCCSSC-SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES---SSEEEECGGGGGT
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC---CCCCCCCHHHHHH
T ss_conf 9999999999997379-99799999999794999999999999987995306---9732034788888
No 35
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.44 E-value=0.0045 Score=37.96 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 568999999999985598633599999981997899999999993259057315654540002372126
Q gi|254780620|r 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 5 ~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
+.-|| |.++..|.. .++.++..+||+..+++++-+.+.+++|.+.|+|.-. +++|+.|...-..+
T Consensus 3 ~~Edy-L~~i~~l~~-~~~~v~~~~iA~~l~vs~~sv~~~l~rL~~~g~i~~~--~~~~i~LT~~G~~~ 67 (214)
T 3hrs_A 3 NKEDY-LKCLYELGT-RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD--KKAGYLLTDLGLKL 67 (214)
T ss_dssp CHHHH-HHHHHHTTS-SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECHHHHHH
T ss_pred HHHHH-HHHHHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCCCEEECHHHHHH
T ss_conf 29999-999999970-4897789999998689957999999999978998973--89777657879999
No 36
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=96.39 E-value=0.013 Score=35.17 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=47.9
Q ss_pred CCCCHHH------HHHHHHHHHHHH---CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 9764568------999999999985---598633-599999981997899999999993259057315654540002372
Q gi|254780620|r 1 MHLTKRT------DYGIRVLMYCAI---HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 1 Mkis~~~------~yAi~~l~~La~---~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
|+|.+.+ +.+-.+.-.+.. .+|.+. |-.+||+..++|+.-+++.++.|...|+|.+.+|. |+..+.++
T Consensus 1 ~~~~~~~~~P~y~~i~~~i~~~I~~G~~~~G~~LPse~~La~~~~VSr~TVR~Al~~L~~eGli~~~~g~--G~~V~~~~ 78 (243)
T 2wv0_A 1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGR--GTFVSKPK 78 (243)
T ss_dssp CCCCTTSSSCHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTS--CEEECCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--CCCCCCCC
T ss_conf 9158999988899999999999983999993999379999999796999999999999977997997884--46557874
No 37
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.34 E-value=0.0095 Score=36.04 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 999999998559863359999998199789999999999325905731565454
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
-.++|.+|+.+++ ++|..+||+..+++++.+.+++..|.+.|||.-.+.+..+
T Consensus 37 q~~vL~~i~~~~g-~~t~~ela~~~~~~~~tvs~~l~~L~~~glv~r~~~~~Dr 89 (147)
T 2hr3_A 37 QLVVLGAIDRLGG-DVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp HHHHHHHHHHTTS-CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999997699-9899999999897987999999999867966873578877
No 38
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=96.32 E-value=0.008 Score=36.46 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 6899999999998559863359999998199789999999999325905731565454000237
Q gi|254780620|r 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 6 ~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
..+=|+.+|-+++.. +.+.+..|||+..++|++-+.++++.|.+.||++-. .|.|+|.-.
T Consensus 12 sl~Ral~IL~~~~~~-~~~~~~~eia~~~gl~~st~~RlL~tL~~~G~l~~~---~~~Y~lG~~ 71 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS---GGRWSLTPR 71 (257)
T ss_dssp HHHHHHHHHHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECGG
T ss_pred HHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC---CCEEEECCH
T ss_conf 999999999999847-999899999998793999999999999973865322---983785504
No 39
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=96.32 E-value=0.01 Score=35.79 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 3359999998199789999999999325905731565454000237212
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
+.++.+||+.+++|++-+.+-|..|.++|+|+..+ ++|+|...-+.
T Consensus 43 ~~~~~eLa~~lg~s~stvs~HL~~L~~aGLV~~~~---~~y~lt~~G~~ 88 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG---ERWVVTDAGKI 88 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECTTTCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC---CEEEECCCCHH
T ss_conf 99799999998919989999999999889679847---98998657741
No 40
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=96.24 E-value=0.017 Score=34.56 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 9999999999855---98633599999981997899999999993259057315654540002372126
Q gi|254780620|r 8 DYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 8 ~yAi~~l~~La~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
-++|++.+.|..- .+++.|++|||+..++++..++++|..|...|+++-. .|.|.++...+..
T Consensus 36 s~~L~~aveLglfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~~~---~g~y~~t~~s~~l 101 (348)
T 3lst_A 36 AAALRAAAAVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRES---DGRFALTDKGAAL 101 (348)
T ss_dssp HHHHHHHHHHTGGGGGTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECTTTGGG
T ss_pred HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE---CCEEECCHHHHHH
T ss_conf 99999999889628971899899999988790989999999999978988942---9856337888887
No 41
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.009 Score=36.18 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHH
Q ss_conf 999999999855986335999999819978999999999932590573156545400023721
Q gi|254780620|r 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 (144)
Q Consensus 9 yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~ 71 (144)
--+++|..|+.++ ..+..+||+..++|++.+.++++.|.+.|+|+. .|+...+.|.....
T Consensus 153 ~~~~iL~~L~~~~--~~s~~ela~~l~~s~~tv~r~l~~Le~~GlV~r-~~r~~~v~LT~~G~ 212 (244)
T 2wte_A 153 EEMKLLNVLYETK--GTGITELAKMLDKSEKTLINKIAELKKFGILTQ-KGKDRKVELNELGL 212 (244)
T ss_dssp HHHHHHHHHHHHT--CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTTTEEEECHHHH
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-ECCCCEEEECHHHH
T ss_conf 9999999999779--989999999979798899999999998899998-37822799878799
No 42
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.19 E-value=0.023 Score=33.79 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=54.5
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHHHHHH
Q ss_conf 999999998559863359999998199789999999999325905731565454--000237212609999999
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILDVVKA 81 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~dI~~a 81 (144)
-+++|.+|+.++ +.|..+||+..+++++.+.+++..|.+.|||.-.+.+.-+ +.|.-.++-..+.+.+..
T Consensus 46 q~~vL~~l~~~~--~~t~~eLa~~l~i~~~tvs~~i~~L~~~g~v~r~~~~~DrR~~~l~lT~~G~~~~~~~~~ 117 (154)
T 2eth_A 46 ELYAFLYVALFG--PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILS 117 (154)
T ss_dssp HHHHHHHHHHHC--CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 999999999869--949999999989798899999999998889021035555640120058989999999999
No 43
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=96.18 E-value=0.0082 Score=36.40 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHC-CHHHHHHHHCC
Q ss_conf 999999998559863359999998199789999999999325905731565454--0002372126-09999999718
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQI-TILDVVKATEE 84 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~I-tl~dI~~aie~ 84 (144)
-.++|.+|..+++++++..+||+..+++++.+.+++..|.+.|||.-.+.+.-. +.+.-.++.- .+..+...++.
T Consensus 36 q~~vL~~L~~~~~~~~~~~~la~~l~~~ks~vs~~l~~L~~~g~I~r~~~~~D~R~~~i~lTe~g~~~i~~~~~~~~~ 113 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFDQ 113 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999999998479999789999999688810699999999988898865798888858999899999999999999999
No 44
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=96.17 E-value=0.023 Score=33.81 Aligned_cols=68 Identities=21% Similarity=0.093 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHHHH---CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 9764568999999999985---598633-599999981997899999999993259057315654540002372
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAI---HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~---~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
|.+-.....+=.+.-.+.. .+|... |-.++|+..++|+.-+++.++.|...|+|.+.+|+ |+..+.++
T Consensus 1 m~~PlY~qI~~~I~~~I~~g~~~pG~~LPse~~La~~~gVSr~tVR~Al~~L~~~Glv~~~~g~--G~~V~~~~ 72 (129)
T 2ek5_A 1 MTVPLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI--GMFVSAQA 72 (129)
T ss_dssp --CCHHHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT--EEEECTTH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--EEEECCCC
T ss_conf 9987999999999999985999996998789999989299999999999999988917996386--67888999
No 45
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=96.16 E-value=0.0081 Score=36.46 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=41.1
Q ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 598633-59999998199789999999999325905731565454000237
Q gi|254780620|r 20 HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 20 ~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
.+|.+. |..+||+.+++|+.-+++.++.|...|+|.+.+|+ |-|...++
T Consensus 48 ~pG~rLPsereLA~~~gVSR~TVR~Al~~L~~~Glv~~~~G~-GtfV~~~~ 97 (272)
T 3eet_A 48 PPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGS-GTYVRERP 97 (272)
T ss_dssp CTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC---EEECCCC
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC-EEEECCCC
T ss_conf 992999089999999894999999999999986993864981-16992687
No 46
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=96.13 E-value=0.0093 Score=36.08 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 598633-599999981997899999999993259057315654540002372
Q gi|254780620|r 20 HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 20 ~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
.+|... |..+||+..++|+..+++.++.|...|+|.+.+|+ |+..+.++
T Consensus 32 ~~G~~LPser~La~~~~VSr~tVr~Al~~L~~~Glv~~~~g~--G~~V~~~~ 81 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM--GSFVTSDK 81 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT--EEEECCCH
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--EEEECCCC
T ss_conf 996999549999999392889999999999988917996386--79980880
No 47
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.13 E-value=0.0064 Score=37.03 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCC
Q ss_conf 9999999999855986335999999819978999999999932590573156545400023721260
Q gi|254780620|r 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 (144)
Q Consensus 8 ~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~It 74 (144)
+=-|.++..|... ++.+++.+||+.++++++-+.+.+++|.+.|||.-. ++||+.|...-..+-
T Consensus 39 EdYLe~Iy~L~~~-~~~vr~~dIA~~L~vs~~sVs~~l~~L~~~GlI~~~--~~~~i~LT~~G~~~A 102 (155)
T 2h09_A 39 DDYVELISDLIRE-VGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI--PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHHHHHHHH-HSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE--TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCCCEEECHHHHHHH
T ss_conf 9999999999853-897709999999698978999999999778898754--998755898599999
No 48
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=96.10 E-value=0.0096 Score=36.01 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHH
Q ss_conf 999999999855---986335999999819978999999999932590573156545400023721
Q gi|254780620|r 9 YGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 (144)
Q Consensus 9 yAi~~l~~La~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~ 71 (144)
++|++.+.|..- .+++.|+++||+..++++..++++|..|...|+++-. .|||+++...+
T Consensus 21 ~~L~~a~elglfd~L~~g~~t~~eLA~~~g~~~~~l~~lL~~L~~~gll~~~---~~~y~lt~~~~ 83 (335)
T 2r3s_A 21 AAIKAAVELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ---AEGYRLTSDSA 83 (335)
T ss_dssp HHHHHHHHTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHH
T ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE---CCEEEECHHHH
T ss_conf 9999999879989985799999999977197999999999999878923873---78565168789
No 49
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.09 E-value=0.005 Score=37.67 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCC
Q ss_conf 999999985598633599999981997899999999993259057315-65454000237
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~ 69 (144)
+++|..|+ +++.++.+||+..+++++-+.+-|+.|+++|+|++.| |+.==|+|..+
T Consensus 61 l~IL~~L~---~g~~tv~eLa~~l~is~stvS~HL~~L~~aGLV~~~r~Gr~~~Y~L~~~ 117 (151)
T 3f6v_A 61 RRLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQ 117 (151)
T ss_dssp HHHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHH---HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHH
T ss_conf 99999998---0993899999998919999999999899889758898779899998879
No 50
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=96.08 E-value=0.027 Score=33.38 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=40.7
Q ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC--CCCCEECCC
Q ss_conf 598633-59999998199789999999999325905731565--454000237
Q gi|254780620|r 20 HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGR--RGGVRLCRP 69 (144)
Q Consensus 20 ~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~--~GGy~Lak~ 69 (144)
.+|.+. |-.+||+..|+|++-++..|+.|...|+|++.+|+ .+|.....+
T Consensus 23 ~pG~~LpsE~eLa~~~gVSRt~VREAL~~L~~~Glv~~~~g~G~~v~~~v~~~ 75 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAA 75 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCC
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEHHH
T ss_conf 98099901999999989198999999999997899786569888435010046
No 51
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=96.07 E-value=0.014 Score=35.11 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHC
Q ss_conf 976456899999999998559-8633599999981997899999999993259057315-654540002372126
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQI 73 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~I 73 (144)
|.++...--+++.+..++... ...+|..+||+.++++++.+.++++.|.++|||+-.+ |+.=-+.|.....++
T Consensus 3 ld~t~~~~~aLk~L~~~~~~~~~~~ls~~eLa~~l~is~~tvsr~l~~Le~~GlI~R~~d~R~~~v~LTekG~~~ 77 (230)
T 3cta_A 3 LETDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDV 77 (230)
T ss_dssp ----CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECHHHHHH
T ss_conf 866699999999999736415799858999999988788899999999998898798115984478988879999
No 52
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.03 E-value=0.015 Score=34.85 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
..+|.+|+.++ ++|..+||+..+++++.+.+++..|.+.|||...+.+..+
T Consensus 45 ~~vL~~l~~~~--~~t~~~La~~l~~~~~~vs~~l~~L~~~Gli~r~~~~~D~ 95 (150)
T 2rdp_A 45 FVALQWLLEEG--DLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999999779--9599999999896887899999999718977985216898
No 53
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=96.00 E-value=0.015 Score=34.81 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 999999999855---98633599999981997899999999993259057315654540002372
Q gi|254780620|r 9 YGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 9 yAi~~l~~La~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
++|++.+.|-.- .+++.|+++||+..++++..++++|..|...|+++.. .|+|++....
T Consensus 46 ~~l~aA~eLglfd~L~~gp~T~~eLA~~~g~~~~~l~rlL~~L~~~Gll~~~---~~~~~~t~~s 107 (359)
T 1x19_A 46 SCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE---DGKWSLTEFA 107 (359)
T ss_dssp HHHHHHHHHTHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHH
T ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE---CCEEECCHHH
T ss_conf 9999999869989974799999999999790999999999999977958974---9978538889
No 54
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=95.95 E-value=0.015 Score=34.86 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=45.9
Q ss_pred HHHHHHHHHH-----CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 9999999985-----598633599999981997899999999993259057315654540002372126
Q gi|254780620|r 10 GIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 10 Ai~~l~~La~-----~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
++++.+.|.. .++++.|++|||+..++++..++++|..|...|+|+-. .|+|.++...+..
T Consensus 31 ~l~~~~~lgifd~L~~~~~~~t~~eLa~~~g~~~~~l~rlL~~L~~~g~l~~~---~~~y~lt~~s~~l 96 (363)
T 3dp7_A 31 VSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE---EDRYVLAKAGWFL 96 (363)
T ss_dssp HHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE---TTEEEECHHHHHH
T ss_pred HHHHHHHCCHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEE---CCCEEECHHHHHH
T ss_conf 99999987978897418999899999988790999999999999858918985---9928778889988
No 55
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=95.93 E-value=0.019 Score=34.22 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 999999998559863359999998199789999999999325905731565454
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
..++|.+|..++ +++..+||+..+++++.+.+++..|.+.|+|...+.+..+
T Consensus 33 q~~vL~~l~~~~--~~t~~~la~~l~i~~~tvs~~v~~L~~~gli~r~~~~~D~ 84 (142)
T 3bdd_A 33 RYSILQTLLKDA--PLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf 999999998779--9899999999896986899999999858987844899998
No 56
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.92 E-value=0.012 Score=35.51 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 99999998559863359999998199--789999999999325905731565454000237212
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCI--SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i--~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
-+||-+|..++ +.|..+||+..++ +++++++-+..|.+.|||+.. | .|=|+|...-+.
T Consensus 16 ~rILE~L~e~g--~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~GLve~~-g-~G~Y~iT~~G~~ 75 (111)
T 3b73_A 16 DRILEIIHEEG--NGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL-A-NGVYVITEEGEA 75 (111)
T ss_dssp HHHHHHHHHHS--CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-S-TTCEEECHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEC-C-CCCEEECHHHHH
T ss_conf 99999999849--999999999868884799999999999878795666-8-700798966899
No 57
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.87 E-value=0.016 Score=34.74 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++|.+|..++ +.|..+||+..+++++-+.+++..|.+.|||...+.+..+
T Consensus 36 ~~vL~~i~~~~--~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~~~~~~~Dk 86 (145)
T 2a61_A 36 FDILQKIYFEG--PKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp HHHHHHHHHHC--CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99999998779--9899999999897987899999998528937996758898
No 58
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=95.84 E-value=0.019 Score=34.22 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=46.7
Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHH
Q ss_conf 559863359999998199789999999999325905731565454000237212609999999
Q gi|254780620|r 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 (144)
Q Consensus 19 ~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~a 81 (144)
..+|.+.+-.+||+..|+|++-++..|+.|...|||++.+|+ |+.... ++.-.+.|+|++
T Consensus 46 l~pG~~L~E~~La~~~gVSRtpvREAL~~L~~~GlV~~~~~~--G~~V~~-~~~~~~~dl~~~ 105 (239)
T 2hs5_A 46 FRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR--GVFVRV-PTAEDITELYIC 105 (239)
T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT--EEEECC-CCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCC-CHHHHHHHHHHH
T ss_conf 999197089999999896959999999999985766630367--763321-136542117999
No 59
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.83 E-value=0.02 Score=34.13 Aligned_cols=66 Identities=8% Similarity=0.089 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--000237212609999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILDV 78 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~dI 78 (144)
.++|.+|+.++ ++|..+||+..+++++.+.+++..|.+.|||+..+.+.-+ ..+.-.++-..+.+-
T Consensus 43 ~~vL~~L~~~~--~~t~~~la~~l~i~~~~vsr~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
T 3nrv_A 43 WRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp HHHHHHHHHSS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCCCHHHHHHHHH
T ss_conf 99999999779--979999999989699899999999850793642479988883004339889999999
No 60
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=95.77 E-value=0.041 Score=32.28 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=47.5
Q ss_pred HHHHHHHHHHH-HHH---HCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC
Q ss_conf 56899999999-998---5598633-5999999819978999999999932590573156545400023
Q gi|254780620|r 5 KRTDYGIRVLM-YCA---IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 (144)
Q Consensus 5 ~~~~yAi~~l~-~La---~~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak 68 (144)
+..+.|-+-+. .+- ..+|... |-.+||+..|+|++-++..+..|...|+|++.+|+ |+....
T Consensus 7 ~~~~~a~~~i~~~I~~g~l~pG~~LPse~eLa~~~gVSr~tVReAl~~L~~eGlv~~~~g~--G~~V~~ 73 (239)
T 1hw1_A 7 SPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGK--PTKVNN 73 (239)
T ss_dssp SHHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE--EEEECC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCC--CCEECC
T ss_conf 9999999999999985999991999159999999892999999999999987995555588--665637
No 61
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.75 E-value=0.023 Score=33.73 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--0002372126099
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITIL 76 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~ 76 (144)
+++|.+++ . +++|..+||+..+++++.+.+++..|.+.|||...+.+.-+ ..+.-.++--.+.
T Consensus 40 ~~vL~~i~--~-~~~t~~ela~~~~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~ 104 (146)
T 2gxg_A 40 FLVLRATS--D-GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHT--T-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHH--C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCHHHHHHH
T ss_conf 99999998--5-99199999999897986999999999868897860787677504430589899999
No 62
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=95.74 E-value=0.023 Score=33.72 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 999999999855---9863359999998199789999999999325905731565454000237
Q gi|254780620|r 9 YGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 9 yAi~~l~~La~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
.+|++-+.|..- .+++.|+++||+..++++..++++|..|...|+++- .|..|.|.+...
T Consensus 53 ~~L~~A~eLglfd~L~~gp~T~~eLA~~~g~~~~~l~rlLr~L~a~Gll~~-~~~~~~~~~t~~ 115 (369)
T 3gwz_A 53 RAIHVAVELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDD-LGHDDLFAQNAL 115 (369)
T ss_dssp HHHHHHHHHTTGGGGTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEE-CSSTTEEECCHH
T ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-ECCCCCCCCCHH
T ss_conf 999999988877998669999999998879198999999999997892788-688876457888
No 63
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=95.68 E-value=0.026 Score=33.41 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHH---H-HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH-
Q ss_conf 689999999999---8-55986335999999819978999999999932590573156545400023721260999999-
Q gi|254780620|r 6 RTDYGIRVLMYC---A-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK- 80 (144)
Q Consensus 6 ~~~yAi~~l~~L---a-~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~- 80 (144)
.+|.+.+.+..- . ..+|...+-.+||+..|+|+.-++..|+.|...|+|+..+| .|+.... ++.-.+.|+++
T Consensus 17 ~~d~v~~~i~~~I~~G~l~pG~~L~e~~La~~~gvSRtpVReAL~~L~~~GlV~~~p~--~G~~V~~-~~~~~~~~i~~~ 93 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH--RGAVIRR-LSLQETLDVLDV 93 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST--TCEEECC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC--CCCCCCC-CCHHHHHHHHHH
T ss_conf 9999999999999849999929718999999989397999999999997788121378--8752323-310269999877
Q ss_pred --HHCC
Q ss_conf --9718
Q gi|254780620|r 81 --ATEE 84 (144)
Q Consensus 81 --aie~ 84 (144)
++|+
T Consensus 94 R~~LE~ 99 (222)
T 3ihu_A 94 AERMTG 99 (222)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 778898
No 64
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=95.68 E-value=0.024 Score=33.71 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=45.4
Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH
Q ss_conf 55986335999999819978999999999932590573156545400023721260999999
Q gi|254780620|r 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 (144)
Q Consensus 19 ~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~ 80 (144)
..+|...+-.+||+..|+|++-++..|..|...|||+..+| +||..+. ++.-.+.|+++
T Consensus 38 l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~p~--~G~~V~~-~~~~~i~el~~ 96 (226)
T 3dbw_A 38 LKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPR--VGFFVTD-VDEKFIRETIE 96 (226)
T ss_dssp SCTTCBCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT--TEEEECC-CCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCC--CCCCCCC-CCHHHHHHHHH
T ss_conf 99909969999999989298999999999988789343799--9876654-40158899899
No 65
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=95.63 E-value=0.0038 Score=38.36 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CC-CCC-----CEECCC
Q ss_conf 9999999985598633599999981997899999999993259057315-65-454-----000237
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR-RGG-----VRLCRP 69 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~-~GG-----y~Lak~ 69 (144)
-+++|-+|+ .++.++.+||+..++|++-+.+-|+.|.++|+|++.+ |+ .|| |+++.+
T Consensus 14 R~~Il~~L~---~~~~~~~ela~~l~~s~~~v~~hL~~L~~aglv~~~~~~~~~~g~~~~yy~~~~~ 77 (232)
T 2qlz_A 14 RRDLLSHLT---CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp HHHHHHHHT---TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred HHHHHHHHH---HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCC
T ss_conf 999999998---1897799999998919889999999998689869986266568876289872554
No 66
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=95.62 E-value=0.025 Score=33.56 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++|..|+.++ +++..+||+..+++++-+.+++..|.+.|||.-.+++..+
T Consensus 48 ~~vL~~l~~~~--~~~~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~~~~D~ 98 (168)
T 2nyx_A 48 FRTLVILSNHG--PINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HHHHHHHHHHC--SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99999999679--9699999999896988999999998164427865337788
No 67
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.58 E-value=0.063 Score=31.18 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--00023721260999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILD 77 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~d 77 (144)
.++|..|..++ +.|..+||+..+++++.+.+++.+|.+.|||+..+.+.-+ +.|.-.|+-..+.+
T Consensus 34 ~~iL~~l~~~~--~~t~~~la~~l~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~ 100 (145)
T 3g3z_A 34 FAVLYTLATEG--SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHH
T ss_conf 99999999879--94999999998969889999999998579879857688877468788987999999
No 68
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=95.54 E-value=0.026 Score=33.41 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 689999999999855---9863359999998199789999999999325905731565454000237
Q gi|254780620|r 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 6 ~~~yAi~~l~~La~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
.+.+||++.+.|-.- .+++.|++|||+..++++..+.++|..|...|+++-. + .|-|.++.-
T Consensus 31 ~~~~al~~A~eLglfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~e~-~-~g~y~~t~~ 95 (360)
T 1tw3_A 31 HTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEED-A-PGEFVPTEV 95 (360)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-E-TTEEEECTT
T ss_pred HHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEE-C-CCEEECCHH
T ss_conf 6779999999879858974699899999988691989999999999867969982-8-984856988
No 69
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=95.54 E-value=0.033 Score=32.83 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=46.9
Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH---HHCC
Q ss_conf 55986335999999819978999999999932590573156545400023721260999999---9718
Q gi|254780620|r 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK---ATEE 84 (144)
Q Consensus 19 ~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~---aie~ 84 (144)
..+|...+-.+||+..|+|++-++..|+.|...|+|+..+|+ |+..+. ++.=.+.|+|+ ++|+
T Consensus 44 l~pG~~L~e~~La~~~gvSRtpVREAL~~L~~eGlv~~~p~~--G~~V~~-~~~~~i~~~~~~R~~lE~ 109 (237)
T 3c7j_A 44 LPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHK--GAVVAP-LITEDAVDAYALRILLES 109 (237)
T ss_dssp SCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTT--EEEECC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCC--CCCCCC-CCCCCCHHHHHHHHHHHH
T ss_conf 999097499999998895869999999999987886323898--874444-422111026899976899
No 70
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.53 E-value=0.043 Score=32.18 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--000237212609999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILDV 78 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~dI 78 (144)
..+|.+|..+++ +++..+||+..+++++.+.+++..|.+.|||.-.+.+.-+ ..+.-.++-..+.+-
T Consensus 40 ~~iL~~l~~~~~-~~t~~eL~~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~~G~~~~~~ 108 (146)
T 2fbh_A 40 WLVLLHLARHRD-SPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIAD 108 (146)
T ss_dssp HHHHHHHHHCSS-CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHH
T ss_pred HHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 999999986799-999999999989689899999999963987786367899895687889889999999
No 71
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A
Probab=95.52 E-value=0.036 Score=32.58 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHC--CHHHHHHHHCCC
Q ss_conf 9999999985598633599999981997899999999993259057315-654540002372126--099999997187
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQI--TILDVVKATEES 85 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~I--tl~dI~~aie~~ 85 (144)
+|.++.++.... +++=..-||+..+.|.+|+.||++.+-++|+|++.. |+--=..|.....+| .+.+++..+|.+
T Consensus 17 iLl~I~~~~~s~-~~~Y~s~iaKeidstysh~~kiL~~mE~~gLV~fe~eGRiK~I~LT~kG~~va~~l~~i~~~l~~~ 94 (95)
T 2qvo_A 17 ILMTIYYESLGG-NDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSIIDIMEND 94 (95)
T ss_dssp HHHHHHHHHHTT-CCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999988615-861999999980993799999999999779768761683789875766599999999999997358
No 72
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.50 E-value=0.01 Score=35.85 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--00023721260999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILD 77 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~d 77 (144)
.++|.+|..+++ +++..+||+..+++++.+.+++..|.+.|||+-.+.+.-+ ..+.-.++--.+.+
T Consensus 50 ~~vL~~L~~~~~-~~t~~~La~~~~v~~~~vs~~i~~Le~~Glv~r~~~~~DrR~~~v~lT~~G~~~~~ 117 (160)
T 3boq_A 50 FDAMAQLARNPD-GLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHHHCTT-CEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHH
T ss_conf 999999986899-99899999998968858999999998679879877688887578877888999999
No 73
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=95.49 E-value=0.051 Score=31.70 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHH
Q ss_conf 97645689999999999855986335999999819978999999999932590573156545400023721
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~ 71 (144)
|.||.+-.--+..+...-...+-+-|.+|||+..|+++.-+..-|..|.+.|+++-..|..-++.+..+..
T Consensus 1 m~LT~kq~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~~L~~Le~kG~i~~~~~~~r~~~~~~~~~ 71 (196)
T 3k2z_A 1 MDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNGKPRALRISKSIR 71 (196)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC---TTCCEESSCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCC
T ss_conf 99898999999999999998498966999999829996457888999987583010542111000123444
No 74
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=95.47 E-value=0.019 Score=34.26 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 999999998559863359999998199789999999999325905731565454
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
-.++|.+|+.++ +.+..+||+..+++++.+.+++..|.+.|||+-.+++..+
T Consensus 39 q~~iL~~l~~~~--~~t~~~La~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~D~ 90 (142)
T 3ech_A 39 DVHVLKLIDEQR--GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp HHHHHHHHHHTT--TCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 999999999779--9899999999896987999999999987985350378888
No 75
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=95.43 E-value=0.014 Score=35.05 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCC-HHHHHHHH
Q ss_conf 999999998559863359999998199789999999999325905731565454--00023721260-99999997
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQIT-ILDVVKAT 82 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~It-l~dI~~ai 82 (144)
-+.+|.+|..+++++++..+||+..+++.+.+.+++..|.+.|||.-.+.+.-. ..+.-.++... +-+++..+
T Consensus 160 e~~vL~~L~~~~~~~~~~~~la~~l~~~~~~vs~~i~~L~~~GlI~r~~~~~D~R~~~i~lT~~g~~~~~~~~~~~ 235 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQV 235 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 9999999986999967699999997888506999999999889989617998887279898988999999999999
No 76
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.40 E-value=0.029 Score=33.13 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHHC
Q ss_conf 99999998559863359999998199789999999999325905731565454----0002372126
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQI 73 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~I 73 (144)
.++|.+++.++ .+|..+||+..+++++.+.+++..|.+.|||+-.+-+.-+ +.|.....++
T Consensus 52 ~~iL~~l~~~~--~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~ 116 (162)
T 2fa5_A 52 WRVITILALYP--GSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQV 116 (162)
T ss_dssp HHHHHHHHHST--TCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHH
T ss_conf 99999998679--989999999978787159999999985798730457898885665789889999
No 77
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=95.33 E-value=0.035 Score=32.70 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=43.9
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHH
Q ss_conf 98633-599999981997899999999993259057315654540002372126099999
Q gi|254780620|r 21 NDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 (144)
Q Consensus 21 ~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~ 79 (144)
+|.+. |-.+||+..++|+.-+++-|+.|...|+|...+|+ |+..+.++..-.+.++.
T Consensus 29 ~G~~LPsE~eLa~~~~VSr~TvR~Al~~L~~eGli~r~~g~--GtfV~~~~~~~~~~~~~ 86 (236)
T 3edp_A 29 TGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGV--GLYVQPKLTAQNILEMT 86 (236)
T ss_dssp CCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT--EEEECCCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCC--EEEECCCCCCCCCCCCC
T ss_conf 91999279999999795999999999999972150405886--69986044554201245
No 78
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=95.32 E-value=0.042 Score=32.19 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEC
Q ss_conf 9999999999855---98633599999981997899999999993259057315654540002
Q gi|254780620|r 8 DYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 (144)
Q Consensus 8 ~yAi~~l~~La~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~La 67 (144)
-.||++.+.|-.- .+++.|+++||+..++++..++++|..|...|+++......+-|.+.
T Consensus 30 ~~aL~~a~eL~lfd~L~~g~~s~~eLA~~~g~~~~~l~rlL~~L~a~Gll~~~~~~~~~~~~t 92 (374)
T 1qzz_A 30 PMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPT 92 (374)
T ss_dssp HHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEEC
T ss_pred HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEECCC
T ss_conf 999999998898889617998999999886919999999999999789589877888423656
No 79
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.28 E-value=0.063 Score=31.17 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=64.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHHHHH-HHCC-CC
Q ss_conf 99999998559863359999998199789999999999325905731565454--00023721260999999-9718-76
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILDVVK-ATEE-SF 86 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~dI~~-aie~-~~ 86 (144)
..+|.+|+.++ .+|..+||+..+++++.+.+++..|.+.|||.-.+.+.-+ ..|.-.++-..+.+-+. .+.. ..
T Consensus 49 ~~vL~~l~~~~--~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~ 126 (162)
T 3k0l_A 49 FTALSVLAAKP--NLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEA 126 (162)
T ss_dssp HHHHHHHHHCT--TCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999779--9899999999896886999999999988997985279998756878898899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 311146887788876566447999999999999998417999
Q gi|254780620|r 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 (144)
Q Consensus 87 ~~~~C~~~~~~~C~~~~~c~~~~~~~~~~~~~~~~L~~~TL~ 128 (144)
.++.+++++ -...+..+.+.+.+.|+..+-.
T Consensus 127 ~~~~~l~~~-----------e~~~l~~~L~~~~~~l~~~~~~ 157 (162)
T 3k0l_A 127 QMLQGVDIN-----------LAFLIRNNLELMVKNLSTFSSL 157 (162)
T ss_dssp HHTTTSCHH-----------HHHHHHHHHHHHHHHTCC----
T ss_pred HHHHCCCHH-----------HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999589999-----------9999999999999999864313
No 80
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.27 E-value=0.036 Score=32.60 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 999999985598633599999981997899999999993259057315
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r 58 (144)
+++|.+|+.++ ++|..+||+..+++++.+.+++..|.+.|||.-.+
T Consensus 44 ~~vL~~L~~~~--~~t~~~La~~l~~~~~tvs~~v~~L~~~glV~r~~ 89 (154)
T 2qww_A 44 LAMINVIYSTP--GISVADLTKRLIITGSSAAANVDGLISLGLVVKLN 89 (154)
T ss_dssp HHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESC
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999779--98999999997978757999999999789979960
No 81
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=95.27 E-value=0.012 Score=35.38 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999855986335999999819978999999999932590573156545
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
.++|.+|+.+++..+|..+||+..+++.+.+.+++..|.+.|||...+-+.-
T Consensus 44 ~~vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~glI~r~~~~~D 95 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENN 95 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-----
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 9999999937999939999999989778589999999998888510577888
No 82
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.27 E-value=0.043 Score=32.18 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 99999999855986335999999819978999999999932590573156545
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
-.++|.+|..++ +++..+||+..+++++-+.++++.|.+.|+|.-.+.+..
T Consensus 31 q~~vL~~i~~~~--~~t~~eLa~~~~~~~~~vs~~v~~L~~~glv~r~~~~~D 81 (138)
T 3bpv_A 31 QVACLLRIHREP--GIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPEN 81 (138)
T ss_dssp HHHHHHHHHHST--TCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 999999998589--979999999989798799999999996898786028998
No 83
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1}
Probab=95.26 E-value=0.025 Score=33.50 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=43.0
Q ss_pred HHHHHHHH----HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC
Q ss_conf 99999999----855986335999999819978999999999932590573156545400023
Q gi|254780620|r 10 GIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 (144)
Q Consensus 10 Ai~~l~~L----a~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak 68 (144)
+|++.+.| +.+ +++.|+++||+..++++..++++|..|...|+++-. ..|+|+++.
T Consensus 24 ~L~~a~elglfd~L~-~g~~t~~eLA~~~g~~~~~l~~lL~~L~~~gll~~~--~~~~y~~t~ 83 (334)
T 2ip2_A 24 CVYVATRLGLADLIE-SGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGD--TRDGYANTP 83 (334)
T ss_dssp HHHHHHHTTHHHHHH-TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECH
T ss_pred HHHHHHHCCHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE--CCCCEECCH
T ss_conf 999999879889986-799999999988791989999999999968973784--788353674
No 84
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.25 E-value=0.043 Score=32.16 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999855986335999999819978999999999932590573156545
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
.++|.+|..++ +++..+||+..+++++-+.+++..|.+.|||.-.+.+.-
T Consensus 50 ~~vL~~l~~~~--~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~r~~~~~D 99 (153)
T 2pex_A 50 YLVMLVLWETD--ERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASD 99 (153)
T ss_dssp HHHHHHHHHSC--SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99999998479--989999999989688689999999998899898118998
No 85
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.24 E-value=0.048 Score=31.87 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
..+|.+|+.++ ++|..+||+..+++++.+.+++..|.+.|||.-.+-+.-+
T Consensus 32 ~~vL~~l~~~~--~~t~~~La~~l~i~~~~vs~~v~~L~~~g~i~r~~~~~D~ 82 (144)
T 1lj9_A 32 YLYLVRVCENP--GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp HHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf 99999998489--9799999999897888999999999968986311488888
No 86
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.23 E-value=0.036 Score=32.60 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHHHHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--000237212609999999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILDVVKA 81 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~dI~~a 81 (144)
.++|..++. ++.+..+||+..+++++-+.+++.+|.+.|||+..+.+.-+ ..+.-.++-..+.+-+..
T Consensus 40 ~~iL~~i~~---~~~t~~~la~~~~~~~~tvs~~i~~L~~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 109 (144)
T 3f3x_A 40 FSILKATSE---EPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANE 109 (144)
T ss_dssp HHHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 999999991---9969999999989788689999999998898444477888884576789899999999999
No 87
>1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=95.22 E-value=0.025 Score=33.54 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHHHHHH----C-CCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEECCCCCCCCEECC
Q ss_conf 99999999985----5-986335999999819978---999999999932590573156545400023
Q gi|254780620|r 9 YGIRVLMYCAI----H-NDYPNRISQIAEACCISE---LFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 (144)
Q Consensus 9 yAi~~l~~La~----~-~~~~~s~~eIA~~~~i~~---~~l~kil~~L~~agli~S~rG~~GGy~Lak 68 (144)
.+|++.+.|-. . .++|.|++|||+..++++ .+|.++|..|...|+++-...-..+|+++.
T Consensus 31 ~~L~~a~el~ifd~L~~~g~p~t~~eLA~~~g~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~y~~t~ 98 (352)
T 1fp2_A 31 MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTV 98 (352)
T ss_dssp HHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECH
T ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCH
T ss_conf 99999998774777841799968999999859292566899999999997798799759884245787
No 88
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.21 E-value=0.049 Score=31.85 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC----CCEECCCHH
Q ss_conf 9999999855986335999999819978999999999932590573156545----400023721
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVRLCRPAD 71 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G----Gy~Lak~~~ 71 (144)
.++|.+|+.++ +.+..+||+..+++++.+.+++..|.+.|||+-.+.+.- -+.|.....
T Consensus 43 ~~vL~~l~~~~--~~t~~~La~~l~~~~~~is~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~ 105 (152)
T 3bj6_A 43 RAILEGLSLTP--GATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGE 105 (152)
T ss_dssp HHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHH
T ss_conf 99999999879--9899999999896987999999999988997742499889845342589899
No 89
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.19 E-value=0.028 Score=33.28 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++|.+|..++ +.|..+||+..+++++-+.+++..|.+.|||+.++.+.-+
T Consensus 43 ~~vL~~l~~~~--~~t~~eLa~~~~i~~~tit~~i~~L~~~g~v~r~~~~~D~ 93 (147)
T 1z91_A 43 YLALLLLWEHE--TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HHHHHHHHHHS--EEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999779--9499999999797887899999999988997986778877
No 90
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=95.17 E-value=0.024 Score=33.70 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=43.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++|.+|..++ +++..+||+..+++++.+.+++..|.+.|+|...+.+.-+
T Consensus 36 ~~vL~~l~~~~--~~t~~~La~~l~~~~~tvs~~l~~L~~~gli~r~~~~~Dr 86 (139)
T 3bja_A 36 FGVIQVLAKSG--KVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp HHHHHHHHHSC--SEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHHHHCC--CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999869--9899999847086888999999999988987983058898
No 91
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=95.17 E-value=0.03 Score=33.07 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=39.7
Q ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 598633-599999981997899999999993259057315654540002372
Q gi|254780620|r 20 HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 20 ~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
.+|... |-.+||+..++|+.-+++.++.|...|+|.+.+|+ |...+.++
T Consensus 24 ~~G~kLPsE~~La~~~~VSR~TvR~Al~~L~~~G~i~~~~G~--Gt~V~~~~ 73 (239)
T 3bwg_A 24 QQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGS--GIFVRKHK 73 (239)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT--EEEECCCC
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCC--CEEECCCC
T ss_conf 991999169999999895999999999999972460524887--24999875
No 92
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=95.16 E-value=0.057 Score=31.42 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 99999999855---9863359999998199789999999999325905731565454000237
Q gi|254780620|r 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 10 Ai~~l~~La~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
|+++.+.|-.. .+++.|++|||+..++++..++++|..|...|+++-.. .|-|.+..-
T Consensus 21 al~~A~eL~lfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~gil~~~~--~g~y~~t~~ 81 (332)
T 3i53_A 21 AVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG--QGVYGLTEF 81 (332)
T ss_dssp HHHHHHHHTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT--TSBEEECTT
T ss_pred HHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC--CCEEECCHH
T ss_conf 9999998798889737999999999887909899999999999789689708--826834888
No 93
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=95.15 E-value=0.042 Score=32.19 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++|..|+.++ +++..+||+..+++++.+.+++..|.+.|||...+.+.-+
T Consensus 41 ~~vL~~l~~~~--~~t~~eLa~~~~~~~~~vs~~i~~L~~~glv~r~~~~~D~ 91 (140)
T 2nnn_A 41 WAALVRLGETG--PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp HHHHHHHHHHS--SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999879--9099999998785735299999999738966972279998
No 94
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=95.13 E-value=0.12 Score=29.59 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCE------ECCCHHHCCHHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156----545400------023721260999999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVR------LCRPADQITILDVVK 80 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~------Lak~~~~Itl~dI~~ 80 (144)
.++|-.|.. +...|..+||+..|+|++.+.+=+++|.+.|+|..... ..-||. +..++..-..-++.+
T Consensus 13 ~~Il~~L~~--d~R~s~~eiA~~~gls~~tv~~Ri~rLe~~GiI~~~~~~ld~~~lg~~~~a~~~i~~~~~~~~~~~~~~ 90 (162)
T 2p5v_A 13 IKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAA 90 (162)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSSTTHHHHHHH
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCCEEEEEEEEEECCCHHHHHHH
T ss_conf 999999998--379999999999892999999999999857932678899893675663148999995104423999999
Q ss_pred HHCCCCCCCCCCC
Q ss_conf 9718763111468
Q gi|254780620|r 81 ATEESFFVAECFA 93 (144)
Q Consensus 81 aie~~~~~~~C~~ 93 (144)
.+.....+..|..
T Consensus 91 ~l~~~p~V~~~~~ 103 (162)
T 2p5v_A 91 SVRKWPEVLSCFA 103 (162)
T ss_dssp HHTTCTTEEEEEE
T ss_pred HHHHCCCCEEEEE
T ss_conf 9984887279999
No 95
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=95.05 E-value=0.01 Score=35.82 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 598633-5999999819978999999999932590573156545400023721260999999971
Q gi|254780620|r 20 HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 20 ~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
.++... |..+||+..++|+.-+++.++.|...|+|.+.+|+ |+..+.+|...+-.|-++-+.
T Consensus 30 ~pG~~LPser~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~--G~~V~~~~~~~~~~~~~~~~~ 92 (102)
T 1v4r_A 30 APGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL--GTVVEKNPIVITGADRLKRME 92 (102)
T ss_dssp CTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT--EEESCSCCCCCSSHHHHHCTT
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--EEEECCCCCCCCHHHHHHHHH
T ss_conf 993998379999999798779999999999988948997586--799877985313289999999
No 96
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=95.05 E-value=0.024 Score=33.61 Aligned_cols=58 Identities=12% Similarity=-0.085 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCCCCCCEECCC
Q ss_conf 999999998559863359999998199789999999999325905731--565454000237
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RGRRGGVRLCRP 69 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~--rG~~GGy~Lak~ 69 (144)
...+|.+|..+ ..+|..++|+..+++...+++.|..|++.|+|++. +|+.+.|.|+..
T Consensus 432 ~~~iL~~l~~~--~~it~~ela~~l~~s~~~~~~~L~~L~~~glie~~~~~g~~~~y~ls~~ 491 (583)
T 3lmm_A 432 IAIVLYLLFQR--PFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNA 491 (583)
T ss_dssp HHHHHHHHHHS--SSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHH
T ss_pred HHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEECHH
T ss_conf 89999999868--8878999998868899999999999997797332455665875852688
No 97
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=95.04 E-value=0.1 Score=29.89 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=49.2
Q ss_pred CC-CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 97-6456899999999998559863359999998199-7899999999993259057315654540002372
Q gi|254780620|r 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 1 Mk-is~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i-~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
|+ +|.+-.=-+..+-..-...+.+-|.+|||+..|+ |+..+.+.+..|.+.|+++-..|..-...+..++
T Consensus 1 M~~LT~kq~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l~~L~~~G~l~~~~~~~r~~~~~~~~ 72 (202)
T 1jhf_A 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEE 72 (202)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSSSCEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 974599999999999999998298966999999849997289999999887638500013544333234676
No 98
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.01 E-value=0.042 Score=32.21 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999998559863359999998199789999999999325905731565454
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++|.+|+.++ ..+..+||+..+++++.+.+++..|.+.|||...+.+.-+
T Consensus 39 ~~vL~~l~~~~--~~~~~~la~~l~i~~~~vs~~i~~L~~~glI~~~~~~~D~ 89 (142)
T 2fbi_A 39 WRVIRILRQQG--EMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQ 89 (142)
T ss_dssp HHHHHHHHHHC--SEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999879--9799999999798988999999999958987983068898
No 99
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=94.99 E-value=0.031 Score=32.97 Aligned_cols=48 Identities=27% Similarity=0.248 Sum_probs=38.8
Q ss_pred HCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC
Q ss_conf 5598633-5999999819978999999999932590573156545400023
Q gi|254780620|r 19 IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 (144)
Q Consensus 19 ~~~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak 68 (144)
..+|... |-.+||+..++|+.-+++-+..|.+.|+|.. ||+ |.|....
T Consensus 30 l~~G~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGlI~r-rG~-GtfV~~~ 78 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGR-TTVVARP 78 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETT-EEEECCC
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEC-CCC-CEEECCC
T ss_conf 999884847999999979799999999999997788871-464-3286167
No 100
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.96 E-value=0.13 Score=29.38 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999855986335999999819978999999999932590573156545
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
..+|.+|+..++ .+|..+||+..+++++-+.+++..|.+.|||+..+-+.-
T Consensus 56 ~~vL~~L~~~~~-~~t~~eLa~~l~i~~stvsr~v~~L~~~GlI~r~~~~~D 106 (166)
T 3deu_A 56 WVTLHNIHQLPP-DQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASD 106 (166)
T ss_dssp HHHHHHHHHSCS-SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----
T ss_pred HHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 999999997698-979999999979899899999999985898886131689
No 101
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.87 E-value=0.055 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454----000237212
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQ 72 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~ 72 (144)
.++|..|+.+ ++.|..+||+..+++++.+.+++..|.+.|||+-.+.+.-+ +.|.....+
T Consensus 40 ~~vL~~l~~~--~~~t~~ela~~~~~~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~LT~~G~~ 103 (155)
T 1s3j_A 40 LFVLASLKKH--GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDI 103 (155)
T ss_dssp HHHHHHHHHH--SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHH
T ss_conf 9999999986--997999999998969989999999998624255202336775200024898999
No 102
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.81 E-value=0.071 Score=30.89 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--0002372126099
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITIL 76 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~ 76 (144)
.++|.+|..++ ++|..+||+..+++++-+.+++..|.+.|||+-.+-+..+ ..+.-.|+-..+.
T Consensus 55 ~~iL~~l~~~~--~~t~~~La~~~~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~lT~~G~~~~ 120 (162)
T 3cjn_A 55 MRALAILSAKD--GLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHSC--SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHH
T ss_conf 99999998479--9899999999897988999999999868966885226888866767898899999
No 103
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.80 E-value=0.12 Score=29.58 Aligned_cols=64 Identities=13% Similarity=-0.002 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHH
Q ss_conf 99999998559863359999998199789999999999325905731565454--0002372126099
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITIL 76 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~ 76 (144)
.++|.+|..++ +++..+||+..+++++.+.+++..|.+.|+|.-.+.+.-+ ..+.-.|+-..+.
T Consensus 40 ~~iL~~l~~~~--~~t~~~La~~l~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~ 105 (143)
T 3oop_A 40 WSVLEGIEANE--PISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHS--SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHH
T ss_conf 99999998689--9799999999896997999999999756774341058998944768898999999
No 104
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=94.73 E-value=0.067 Score=31.02 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 335999999819978999999999932590573156
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
+++-++||+..|+++..+.++++.|++.|+|+..++
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l~~L~~~g~I~~~~~ 199 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGK 199 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 778999998879999999999999998898997799
No 105
>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71
Probab=94.69 E-value=0.1 Score=29.97 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC--CCCEECCC
Q ss_conf 98633599999981997899999999993259057315654--54000237
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--GGVRLCRP 69 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~--GGy~Lak~ 69 (144)
+++++|...||++.++|-+.|+++|..|..+|++...-.-. |--+|.-.
T Consensus 33 ~g~~wSLAkl~KRa~vpMStLRR~LT~L~~aGlv~~~~~edG~g~A~LT~~ 83 (96)
T 2obp_A 33 GATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQE 83 (96)
T ss_dssp TCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHH
T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHH
T ss_conf 999533999987708967999999999861780588863577401004166
No 106
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.55 E-value=0.071 Score=30.88 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=45.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454----000237212
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQ 72 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~ 72 (144)
.++|..|+.+ ++.|..+||+..+++.+-+.+++..|.+.|||.-.+.++-+ +.|.....+
T Consensus 46 ~~iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~v~~L~~~Glv~r~~~~~D~R~~~l~LT~~G~~ 109 (155)
T 3cdh_A 46 WRVLACLVDN--DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRA 109 (155)
T ss_dssp HHHHHHHSSC--SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH
T ss_conf 9999999857--996999999998969988999999999689779831588888678788989999
No 107
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.44 E-value=0.053 Score=31.65 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHC
Q ss_conf 999999998559863359999998199789999999999325905731565454--0002372126
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQI 73 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~I 73 (144)
..++|.+|+.++ +.+..+||+..+++++.+.+++..|.+.|+|+..+.+.-+ +.+.-.++-.
T Consensus 39 q~~vL~~i~~~~--~~t~~~la~~l~~~~~~vs~~l~~L~~~gli~r~~~~~DrR~~~l~LT~~G~ 102 (142)
T 2bv6_A 39 QFLVLTILWDES--PVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSE 102 (142)
T ss_dssp HHHHHHHHHHSS--EEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHH
T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHH
T ss_conf 999999999779--9899999999897987999999999988997983378888755644788799
No 108
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.43 E-value=0.095 Score=30.13 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999855986335999999819978999999999932590573156545
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
..+|.+|..++ ++|..+||+..+++++-+.+++..|.+.|+|+..+-++-
T Consensus 37 ~~vL~~l~~~~--~~t~~ela~~~~~~~~~vs~~l~~L~~~g~i~r~~~~~D 86 (138)
T 1jgs_A 37 FKVLCSIRCAA--CITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPND 86 (138)
T ss_dssp HHHHHHHHHHS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTC
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99999998779--989999999989788799999999986897798556888
No 109
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=94.37 E-value=0.1 Score=29.95 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHH----HC----CCEEECCCCCCCCEECCCHH
Q ss_conf 9999999999855986335999999819-----97899999999993----25----90573156545400023721
Q gi|254780620|r 8 DYGIRVLMYCAIHNDYPNRISQIAEACC-----ISELFLFKILQPLV----KA----GIVETVRGRRGGVRLCRPAD 71 (144)
Q Consensus 8 ~yAi~~l~~La~~~~~~~s~~eIA~~~~-----i~~~~l~kil~~L~----~a----gli~S~rG~~GGy~Lak~~~ 71 (144)
.....+|.+|+.+++..+|-++|.+..- .+...+...+..|+ .. .+|.++||. ||+|.++.-
T Consensus 39 ~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~~I~Tvrg~--GY~L~~~~~ 113 (120)
T 2z9m_A 39 HREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGV--GYFLQQHEL 113 (120)
T ss_dssp HHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTT--EEEECCC--
T ss_pred HHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEECCE--EEEEECCCC
T ss_conf 999999999997899637568966650377778988770358999999975078999849993897--288746854
No 110
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=94.33 E-value=0.053 Score=31.63 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 3359999998199789999999999325905731565
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~ 60 (144)
+.|-++||+..|+++..+.+++++|++.|+|+..+|.
T Consensus 177 ~lt~~~LA~~lgisr~tvsR~l~~L~~~giI~~~~~~ 213 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNK 213 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 8689999989799999999999999988989964999
No 111
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=94.30 E-value=0.077 Score=30.68 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 999999985598633599999981997899999999993259057315654
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
..+|.++..+ ++++|..+||+..+++++-+.+++..|.+.|||+..+-+.
T Consensus 42 ~~iL~~l~~~-~~~~t~~ela~~l~~~~~~vsr~v~~L~~~glI~r~~~~~ 91 (150)
T 3fm5_A 42 YSVLVLACEQ-AEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPS 91 (150)
T ss_dssp HHHHHHHHHS-TTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----
T ss_pred HHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999985-9898999999997887877889999897647646601866
No 112
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=94.27 E-value=0.091 Score=30.24 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHHC
Q ss_conf 9999998559863359999998199789999999999325905731565454----0002372126
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQI 73 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~I 73 (144)
++|..|+ ..++.|..+||+..+++++-+.+++..|.+.|||...+.+.-+ ..|.....++
T Consensus 40 ~vL~~l~--~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~ 103 (140)
T 3hsr_A 40 IVLMAIE--NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAI 103 (140)
T ss_dssp HHHHHSC--TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHT
T ss_pred HHHHHHH--HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHH
T ss_conf 9999998--679989999999989786479999999972797798215888886888889889999
No 113
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=94.24 E-value=0.21 Score=28.11 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEEC
Q ss_conf 999985598633599999981-----99789999999999325905731565454--0002
Q gi|254780620|r 14 LMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVKAGIVETVRGRRGG--VRLC 67 (144)
Q Consensus 14 l~~La~~~~~~~s~~eIA~~~-----~i~~~~l~kil~~L~~agli~S~rG~~GG--y~La 67 (144)
+-.|. +.+++.|+.+|.+.. .++++-+.+.|..|.+.|+|......+|. |.+.
T Consensus 28 l~~l~-~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~~~gii~~i~~~~~~~~y~~~ 87 (145)
T 2fe3_A 28 LEYLV-NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp HHHHH-HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred HHHHH-CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCEEEECC
T ss_conf 99998-5899999999999998507898888999999999855217999718981799537
No 114
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.20 E-value=0.081 Score=30.53 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHH
Q ss_conf 99999998559863359999998199789999999999325905731565454----000237212
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQ 72 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~ 72 (144)
.++|.+|..++ +++..+||+..+++.+-+.+++..|.+.|||.-.+.+.-+ +.|....++
T Consensus 56 ~~vL~~l~~~~--~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~ 119 (161)
T 3e6m_A 56 LRLLSSLSAYG--ELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKK 119 (161)
T ss_dssp HHHHHHHHHHS--EEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHH
T ss_conf 99999999779--98999999998978879999999998389779832589987311016888999
No 115
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=94.13 E-value=0.089 Score=30.29 Aligned_cols=57 Identities=37% Similarity=0.461 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHH-----CCC----HHHHHHHHHHHHH---CCCEEECCCCCCCCEECCCH
Q ss_conf 99999985598633599999981-----997----8999999999932---59057315654540002372
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEAC-----CIS----ELFLFKILQPLVK---AGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~-----~i~----~~~l~kil~~L~~---agli~S~rG~~GGy~Lak~~ 70 (144)
.+|.+|+.++++.+|-++|.+.. ..+ ..|+.++-++|.+ ..+|+++||. ||+|..|.
T Consensus 150 ~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~I~tvrg~--GY~l~~~~ 218 (223)
T 2hqr_A 150 EVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRR--GYRFCYPK 218 (223)
T ss_dssp HHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTTSSSCCEEECSSS--EEEECCCG
T ss_pred HHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECE--EEEECCCC
T ss_conf 8899998789927829999888418877888677999999999985276999809998170--36878788
No 116
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=94.09 E-value=0.098 Score=30.06 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 335999999819978999999999932590573156
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
+.|-++||+..|+++..+.++++.|++.|+|+..+|
T Consensus 178 ~~t~~~lA~~lg~sr~tv~r~l~~L~~~g~I~~~~~ 213 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGR 213 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSS
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 505999988869989999999999997897997199
No 117
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=94.07 E-value=0.14 Score=29.14 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 335999999819978999999999932590573156
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
++|-++||...|+++..+.++|+.|++.|+|+..+|
T Consensus 217 ~lt~~~LA~~lG~sr~tvsR~l~~L~~~glI~~~~~ 252 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 252 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 689999999979989999999999997991996599
No 118
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.04 E-value=0.099 Score=30.02 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECCCHHHCCHHHHHHHHCC
Q ss_conf 9999998559863359999998199789999999999325905731565454----000237212609999999718
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQITILDVVKATEE 84 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak~~~~Itl~dI~~aie~ 84 (144)
++|..|..++ .+|..+||+..+++++.+.+++.+|.+.|||.-.+.+.-+ ..|....+++ +.++++.++.
T Consensus 52 ~iL~~L~~~~--~~s~~ela~~~~~~~stvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~l-~~~~~~~~~~ 125 (207)
T 2fxa_A 52 HILWIAYQLN--GASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEV-FWSLLEEFDP 125 (207)
T ss_dssp HHHHHHHHHT--SEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHH-HHHHHHHCCG
T ss_pred HHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECHHHHHH-HHHHHHHHHH
T ss_conf 9999999769--949999999988698799999999996899887238988756898889889999-9999999999
No 119
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583}
Probab=93.95 E-value=0.08 Score=30.57 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC-----CCHH----HHHHHHHHHHHC----CCEEECCCCCCCCEECCC
Q ss_conf 99999999855986335999999819-----9789----999999999325----905731565454000237
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC-----ISEL----FLFKILQPLVKA----GIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~-----i~~~----~l~kil~~L~~a----gli~S~rG~~GGy~Lak~ 69 (144)
-..+|.+|+.++++.+|-++|.+..- .... ++.++=++|... .+|.++||. ||+|.-|
T Consensus 48 E~~lL~~L~~~~g~vvsr~~L~~~vWg~~~~~~~~sl~~~I~rLRkKl~~~~~~~~~I~Tvrg~--GY~l~~p 118 (121)
T 2hwv_A 48 EFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGV--GYYLRNP 118 (121)
T ss_dssp HHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCSSTTSCSSEEEETTT--EEEECCC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCE--EEEECCC
T ss_conf 9999999987889988999999997198766785078569999999876168999869997783--3685698
No 120
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=93.84 E-value=0.37 Score=26.64 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC
Q ss_conf 645689999999999855-986335999999819978999999999932590573156545400023
Q gi|254780620|r 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 (144)
Q Consensus 3 is~~~~yAi~~l~~La~~-~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak 68 (144)
+|...|..-+++-+|-.. .+.++++.+||+.+++|..-+-++|-.|.+.|.|....|.-==|+|+.
T Consensus 5 ls~~~d~e~~Il~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~l~~ 71 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 71 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC-
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC
T ss_conf 5347379999999999737997521999999969888898999999998798640699899606378
No 121
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=93.80 E-value=0.084 Score=30.46 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHHHHHHHH--CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHH
Q ss_conf 9999999985--5986335999999819978999999999932590573156545400023721
Q gi|254780620|r 10 GIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 (144)
Q Consensus 10 Ai~~l~~La~--~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~ 71 (144)
+|++-+.+-. .-+++.|++|||+..++++..++++|..|...|+++-. +|+|+++.-.+
T Consensus 40 ~L~~av~l~lfd~l~~~~t~~eLA~~~g~~~~~l~~lLr~L~a~Gll~~~---~~~y~~t~~~~ 100 (352)
T 3mcz_A 40 ILHYAVADKLFDLTQTGRTPAEVAASFGMVEGKAAILLHALAALGLLTKE---GDAFRNTALTE 100 (352)
T ss_dssp HHHHHHHTTHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHH
T ss_pred HHHHHHHCCCCHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE---CCEEECCHHHH
T ss_conf 99999977983232699999999988298989999999999868928998---99997888899
No 122
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A
Probab=93.73 E-value=0.15 Score=29.01 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=40.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC-----CCHH----HHHHHHHHHHHCC---CEEECCCCCCCCEECC
Q ss_conf 99999999855986335999999819-----9789----9999999993259---0573156545400023
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC-----ISEL----FLFKILQPLVKAG---IVETVRGRRGGVRLCR 68 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~-----i~~~----~l~kil~~L~~ag---li~S~rG~~GGy~Lak 68 (144)
-..+|.+|+.++++++|-++|.+..- .+.. ++.++=.+|...+ +|.++||. ||+|..
T Consensus 36 E~~lL~~L~~~~g~vvsr~~l~~~vw~~~~~~~~~~l~~~I~rLRkkl~~~~~~~~I~Tvrg~--GY~l~~ 104 (106)
T 1gxq_A 36 EFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGT--GYRFST 104 (106)
T ss_dssp HHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGGGTGGGGEEEETTT--EEEECS
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC--CEEEEE
T ss_conf 999999998676767769999998738776899877999999999985125999829997680--066832
No 123
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.60 E-value=0.089 Score=30.28 Aligned_cols=52 Identities=23% Similarity=0.050 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 99999999985598633599999981997899999999993259057315654
Q gi|254780620|r 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 9 yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
-|++++-.|-.++ +-++-++||+..++|+.-++++|..|...|+|...+-+.
T Consensus 19 ~a~~i~~~L~~~~-~~l~ee~la~~~~i~~k~vR~iL~~L~~~~lv~~~r~kd 70 (110)
T 1q1h_A 19 DVIDVLRILLDKG-TEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRD 70 (110)
T ss_dssp TTHHHHHHHHHHC-SCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC-
T ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHEEEEC
T ss_conf 8999999999858-877899999894999999999999999879625201233
No 124
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=93.58 E-value=0.18 Score=28.46 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC---------CCHHHHHHHHHHHHHC----CCEEECCCCCCCCEECCCHHH
Q ss_conf 99999999855986335999999819---------9789999999999325----905731565454000237212
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC---------ISELFLFKILQPLVKA----GIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~---------i~~~~l~kil~~L~~a----gli~S~rG~~GGy~Lak~~~~ 72 (144)
-..+|.+|+.+++..+|-++|.+..- .=..++.++=++|.+. .+|+++||. ||+|.-+.++
T Consensus 36 E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~i~~~I~rLRkkl~~~~~~~~~I~Tv~g~--GY~l~~~~~~ 109 (110)
T 1opc_A 36 EFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGL--GYVFVPDGSK 109 (110)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCSCTTSCSSEEEETTT--EEEECCC---
T ss_pred HHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCE--EEEECCCCCC
T ss_conf 9999999986477764199998784386557674789999999999875368999849995786--3798567777
No 125
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.58 E-value=0.21 Score=28.13 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=42.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC-----CCH----HHHHHHHHHHHHC----CCEEECCCCCCCCEECCCH
Q ss_conf 99999999855986335999999819-----978----9999999999325----9057315654540002372
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC-----ISE----LFLFKILQPLVKA----GIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~-----i~~----~~l~kil~~L~~a----gli~S~rG~~GGy~Lak~~ 70 (144)
-..+|-+|+.++++.+|-++|.+..- .+. .++.++=++|.+. .+|+++||. ||+|.-|.
T Consensus 158 E~~lL~~L~~~~g~vvsr~~l~~~vwg~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~Tvrg~--GYrl~~p~ 229 (238)
T 2gwr_A 158 EFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGV--GYKAGPPT 229 (238)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTT--EEEECCC-
T ss_pred HHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCE--EEEECCCC
T ss_conf 9999999976799708599999874477668874769999999999753178999869987688--47787888
No 126
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=93.58 E-value=0.096 Score=30.09 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 999999985598633599999981997899999999993259057315
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r 58 (144)
.++|.+++. ++++..+||+..+++++.+.+++.+|.+.|||+-.|
T Consensus 41 ~~iL~~l~~---~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~r 85 (151)
T 3kp7_A 41 SHVLNMLSI---EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEK 85 (151)
T ss_dssp HHHHHHHHH---SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999862---899999999998968889999999998889830146
No 127
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=93.49 E-value=0.16 Score=28.73 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 3359999998199789999999999325905731565
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~ 60 (144)
+.+-++||+..|+++..+.++|+.|++.|+|+..+|.
T Consensus 186 ~~~~~~lA~~~g~sr~tv~R~L~~L~~~glI~~~~~~ 222 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKE 222 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 7899999989798999999999999988989970999
No 128
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=93.45 E-value=0.13 Score=29.39 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHH----C-CCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEC--------CCCCCCCEECCC
Q ss_conf 8999999999985----5-986335999999819978---9999999999325905731--------565454000237
Q gi|254780620|r 7 TDYGIRVLMYCAI----H-NDYPNRISQIAEACCISE---LFLFKILQPLVKAGIVETV--------RGRRGGVRLCRP 69 (144)
Q Consensus 7 ~~yAi~~l~~La~----~-~~~~~s~~eIA~~~~i~~---~~l~kil~~L~~agli~S~--------rG~~GGy~Lak~ 69 (144)
.-++|++.+.|-. . .+++.|+++||++.++++ .+|.++|..|...|++.-. .-..|.|+|+..
T Consensus 23 ~s~~L~~a~eL~lfd~L~~~g~p~t~~eLA~~~g~~~~~~~~L~r~Lr~L~~~gl~~~~~~~~~~~~~~~~~~y~lt~~ 101 (358)
T 1zg3_A 23 SSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP 101 (358)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHH
T ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEECCHH
T ss_conf 9999999998781788865699979999998839592577899999999997798475323444566655663517888
No 129
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=93.37 E-value=0.18 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 335999999819978999999999932590573156
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
++|-++||+..|+++..+.|+++.|.+.|+|+..+|
T Consensus 187 ~lt~~~lA~~lg~sr~tv~R~l~~l~~~giI~~~~~ 222 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHARGK 222 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 789999999979989999999999997898997399
No 130
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.37 E-value=0.21 Score=28.13 Aligned_cols=78 Identities=8% Similarity=0.054 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCE------ECCCHHHCCHHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156----545400------023721260999999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVR------LCRPADQITILDVVK 80 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~------Lak~~~~Itl~dI~~ 80 (144)
.++|-.|..+ ...|..+||+..|+|++.+.+=+++|.+.|+|..... ..=||. +.-+|. ..-++.+
T Consensus 8 ~~Il~~L~~n--~R~s~~eiA~~~g~s~~tv~~Ri~rL~~~GiI~~~~~~id~~~lg~~~~a~i~i~~~~~--~~~~v~~ 83 (144)
T 2cfx_A 8 LNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNA--DYERFKS 83 (144)
T ss_dssp HHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGG--CHHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCEEEEEEEEEECCC--CHHHHHH
T ss_conf 9999999983--89999999999892989999999999858984678999187991972899999997667--6788999
Q ss_pred HHCCCCCCCCCC
Q ss_conf 971876311146
Q gi|254780620|r 81 ATEESFFVAECF 92 (144)
Q Consensus 81 aie~~~~~~~C~ 92 (144)
.+..-..+..|.
T Consensus 84 ~l~~~p~V~~~~ 95 (144)
T 2cfx_A 84 YIQTLPNIEFCY 95 (144)
T ss_dssp HHHTCTTEEEEE
T ss_pred HHHCCCCCEEEE
T ss_conf 996498502688
No 131
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=93.32 E-value=0.33 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 3359999998199789999999999325905731565
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~ 60 (144)
+.|-++||+..|+++..+.++++.|++.|+|+..+|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~~~~ 205 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGK 205 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 8999999999798999999999999988989972999
No 132
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=93.25 E-value=0.011 Score=35.68 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=41.6
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 98633-59999998199789999999999325905731565454000237212
Q gi|254780620|r 21 NDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 21 ~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
+|... |..++|+..++|+..+++.+..|.+.|+|.+.+|+ |+..+.++..
T Consensus 31 ~G~~LPs~~~La~~~~VSr~tVr~Al~~L~~~G~i~~~~g~--G~~V~~~~~~ 81 (126)
T 3ic7_A 31 EEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI--GFFVASGAKM 81 (126)
T ss_dssp BTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT--EEEECTTHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCE--EEEECCCCHH
T ss_conf 95998689999999698989999999999988947997170--7898379788
No 133
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium}
Probab=93.25 E-value=0.32 Score=27.01 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 99999999985598633599999981-9978999999999932590573156545400023721260999999971
Q gi|254780620|r 9 YGIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 9 yAi~~l~~La~~~~~~~s~~eIA~~~-~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
+.+.++-.|... ....+-.+|.+.. ++|+..|.+-|..|...|+|+-...+..-|.|. +.-..|..|+.++.
T Consensus 28 Wt~~Il~~L~~g-~~r~~F~el~~~l~~Is~~~Ls~rLk~L~~~Glv~r~~~~~veY~LT--~~G~~L~~il~~l~ 100 (111)
T 3df8_A 28 YTMLIISVLGNG-STRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALT--EKGMNVRNSLMPLL 100 (111)
T ss_dssp THHHHHHHHTSS-SSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEEC--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCEEEEEC--CCHHHHHHHHHHHH
T ss_conf 899999999808-98577999998720235888999999999799377269997588779--68889999999999
No 134
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=93.24 E-value=0.21 Score=28.05 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHH-----CCC----HHHHHHHHHHHHH---CCCEEECCCCCCCCEECCC
Q ss_conf 999999985598633599999981-----997----8999999999932---5905731565454000237
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEAC-----CIS----ELFLFKILQPLVK---AGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~-----~i~----~~~l~kil~~L~~---agli~S~rG~~GGy~Lak~ 69 (144)
..+|.+|+.++++.+|-++|.+.. ..+ ..++.++-++|.. ..+|+++||. ||+|..+
T Consensus 157 ~~lL~~L~~~~~~vvsr~~L~~~vwg~~~~~~~~tl~~~I~rLR~KL~~~~~~~~I~tv~g~--GY~l~~e 225 (225)
T 1kgs_A 157 YQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGI--GYVARDE 225 (225)
T ss_dssp HHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTT--EEEECCC
T ss_pred HHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCE--EEEEEEC
T ss_conf 99999987524344429999998717777876576999999999984577999948991360--0898239
No 135
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.18 E-value=0.31 Score=27.06 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC----CCCCCCEE
Q ss_conf 999999985598633599999981997899999999993259057315----65454000
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGGVRL 66 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r----G~~GGy~L 66 (144)
.++|-.|..+ ...|..+||+..|+|++-+.+=+++|.+.|+|..+. ...||+.+
T Consensus 20 ~~IL~~Lq~d--~R~s~~eIA~~lgls~~tv~~Ri~rLe~~GvI~~~~~~~~~~~~~~~~ 77 (171)
T 2ia0_A 20 RNILRLLKKD--ARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHL 77 (171)
T ss_dssp HHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEE
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCE
T ss_conf 9999999984--899999999998909999999999999789647999974322478723
No 136
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=93.08 E-value=0.23 Score=27.88 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHC---CCH----HHHHHHHHHHHHC----CCEEECCCCCCCCEECC
Q ss_conf 89999999999855986335999999819---978----9999999999325----90573156545400023
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEACC---ISE----LFLFKILQPLVKA----GIVETVRGRRGGVRLCR 68 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~~---i~~----~~l~kil~~L~~a----gli~S~rG~~GGy~Lak 68 (144)
.|+ .+|-+|+.++++.+|-++|.+... ++. .++.++-++|... .+|+++||. ||+|..
T Consensus 149 ~E~--~iL~~L~~~~g~vvsr~~l~~~vw~~~~~~~tv~~~I~rLRkKL~~~~~~~~~I~tvrg~--GY~~~~ 217 (220)
T 1p2f_A 149 KEF--EILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDDPNRPRYIKTIWGV--GYMFTG 217 (220)
T ss_dssp HHH--HHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTT--EEEECC
T ss_pred HHH--HHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC--CEEECC
T ss_conf 999--999999848996781999987860788886679999999999730078999839997687--869738
No 137
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=93.06 E-value=0.13 Score=29.29 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 335999999819978999999999932590573156
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
++|-++||...|+++..+.|+++.|++.|+|+..+|
T Consensus 175 ~lt~~~iA~~lg~sr~tvsR~l~~l~~~giI~~~~~ 210 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPR 210 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 769999998869989999999999997899997299
No 138
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=93.05 E-value=0.26 Score=27.58 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHH----C---CCEEECCCCCCCCEECCCH
Q ss_conf 9999999855986335999999819-----978999999999932----5---9057315654540002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACC-----ISELFLFKILQPLVK----A---GIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~-----i~~~~l~kil~~L~~----a---gli~S~rG~~GGy~Lak~~ 70 (144)
..+|.+|+.++++.+|-++|.+..- ....-+...+..|++ . .+|.++||. ||+|..+.
T Consensus 34 ~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~I~Tvrg~--GY~l~v~~ 103 (112)
T 2jzy_A 34 YVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGA--GYVLEIRE 103 (112)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTTTTSSCCCEECCTTT--CBEECCSC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC--CEEEECCC
T ss_conf 99999998488987439999986148875654112999999999985675899839996882--47984067
No 139
>3l09_A Putative transcriptional regulator; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.81A {Jannaschia SP}
Probab=93.04 E-value=0.15 Score=28.88 Aligned_cols=55 Identities=25% Similarity=0.202 Sum_probs=44.8
Q ss_pred HCCCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHC
Q ss_conf 55986335---99999981997899999999993259057315-654540002372126
Q gi|254780620|r 19 IHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQI 73 (144)
Q Consensus 19 ~~~~~~~s---~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~I 73 (144)
.+.++.++ .-++.+..|+++.-++--++.|++.|++++.| |+..+|+|+....+.
T Consensus 37 ~~~gg~i~~~~Li~ll~~lGi~~~avRtAlsRL~~~GwL~~~r~GR~s~Y~Lt~~g~~~ 95 (266)
T 3l09_A 37 RDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQ 95 (266)
T ss_dssp HTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECHHHHHH
T ss_conf 47898041999999999859980589999999987386242103662113567889999
No 140
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=93.02 E-value=0.085 Score=30.40 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 3359999998199789999999999325905731565
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~ 60 (144)
++|-++||+..|+++..+.++++.|++.|+|+-.+|.
T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~ 175 (195)
T 2zdb_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATAYRR 175 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 8879999988799799999999999988989970999
No 141
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=92.98 E-value=0.34 Score=26.87 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 764568999999999985598633599999981--997899999999993259057315
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC--CISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~--~i~~~~l~kil~~L~~agli~S~r 58 (144)
.+|.+-.-=+++++.--...++|+.|+.|++.. ++|++.++.+|+.|-+.||+..--
T Consensus 14 ~L~~R~~~IL~aiVe~Yi~t~~PVGSk~L~~~~~l~~SsATIRN~Ma~LE~~G~L~qpH 72 (338)
T 1stz_A 14 KLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 32899999999999999843983678999987289988088999999999786715899
No 142
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=92.97 E-value=0.12 Score=29.49 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 3359999998199789999999999325905731565454000237212
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
++|-++||+..|+++..+.++++.|.+.|+|+..+|. ....|++.
T Consensus 180 ~~t~~~lA~~~G~sr~tvsr~l~~l~~~g~I~~~~~~----i~I~d~~~ 224 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKR----IKIIDCDR 224 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTE----EEESCHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCE----EEECCHHH
T ss_conf 5059999988798999999999999988979970999----99868999
No 143
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.74 E-value=0.25 Score=27.64 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHC--CCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9999999999855--986-335999999819978999999999932590573156
Q gi|254780620|r 8 DYGIRVLMYCAIH--NDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 8 ~yAi~~l~~La~~--~~~-~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
+..+.++++|..+ .+. ..|.+.||+..|+++.-+.+.++.|.+.|+|.-.+.
T Consensus 32 ~~e~~vll~l~~~~~~~~~~PS~~~La~~~g~s~~~v~~~l~~L~~~gli~i~~~ 86 (128)
T 2vn2_A 32 EGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999999999999875999999999998959499999999999998899798978
No 144
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99}
Probab=92.72 E-value=0.17 Score=28.66 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHH-------CCCEEECCCCCCCCEECCCH
Q ss_conf 9999999855986335999999819-----978999999999932-------59057315654540002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACC-----ISELFLFKILQPLVK-------AGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~-----i~~~~l~kil~~L~~-------agli~S~rG~~GGy~Lak~~ 70 (144)
..+|.+|+.++++.+|-++|.+..- .+..-+...+..|++ ..+|.++||. ||+|.-|+
T Consensus 35 ~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkl~~~~~~~~I~Tv~g~--GYrl~~~~ 104 (109)
T 2hqn_A 35 FEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRR--GYRFCYPK 104 (109)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTTTSCCCCEEECSSS--EEEECCCS
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC--CEEECCCC
T ss_conf 99999999679998789999998609777767440999999999986055999859997286--43887788
No 145
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=92.69 E-value=0.14 Score=29.08 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 3359999998199789999999999325905731565454000237212
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
++|-++||+..|+++..+.++|+.|++.|+|+..+|. + ...+|+.
T Consensus 193 ~lt~~~LA~~lGisr~tvsR~L~~L~~~glI~~~~~~---I-~I~d~~~ 237 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKK---I-TVHKPVT 237 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE---E-EECC---
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE---E-EECCHHH
T ss_conf 5259999888799999999999999978989974999---9-9858999
No 146
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=92.64 E-value=0.059 Score=31.36 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=49.1
Q ss_pred HHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--CEECCCHHHCCHHHH
Q ss_conf 9999998559-863359999998199789999999999325905731565454--000237212609999
Q gi|254780620|r 12 RVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQITILDV 78 (144)
Q Consensus 12 ~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG--y~Lak~~~~Itl~dI 78 (144)
.+|..|...+ ...+|..+||+..+++.+.+.+++..|.+.|||+-.+.+..+ +.+.-.++-..+.+-
T Consensus 73 ~vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~l~~~ 142 (181)
T 2fbk_A 73 DLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTH 142 (181)
T ss_dssp HHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHHH
T ss_conf 9999998509999909999999978787579999999998788243578778862211328889999999
No 147
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=92.61 E-value=0.15 Score=28.94 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHC--CCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 89999999999855--986-335999999819978999999999932590573156
Q gi|254780620|r 7 TDYGIRVLMYCAIH--NDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 7 ~~yAi~~l~~La~~--~~~-~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
++..+.+++.|... .+. ..|.+.||+..++++.-+.+.++.|.+.|+|.-...
T Consensus 31 s~~e~~vll~l~~~~~~g~~fPS~~~La~~~g~s~~~v~~~l~~L~~kgli~i~~~ 86 (135)
T 2v79_A 31 NETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEEC 86 (135)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98999999999998876997989999998959499999999999998899799978
No 148
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.49 E-value=0.4 Score=26.43 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC---C-CCCCEE------CCCHHHCCHHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156---5-454000------23721260999999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG---R-RGGVRL------CRPADQITILDVVK 80 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG---~-~GGy~L------ak~~~~Itl~dI~~ 80 (144)
.++|-.|. .++..|.++||+..|+|++-+.+=+++|.+.|+|+.... + .=||.. .-.+..-...++.+
T Consensus 6 ~~Il~~L~--~d~R~s~~eia~~lg~s~~tv~~Ri~~L~~~GvI~~~~~~id~~~lg~~~~~~~~i~~~~~~~~~~~v~~ 83 (150)
T 2pn6_A 6 LRILKILQ--YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGN 83 (150)
T ss_dssp HHHHHHHT--TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECCCTTHHHHHHH
T ss_pred HHHHHHHH--HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHCCCCHHEEEEECCCCCCHHHHHHHH
T ss_conf 99999999--8489999999999893999999999999968985553589880650432210244202356037889999
Q ss_pred HHCCCCCCCCCCC
Q ss_conf 9718763111468
Q gi|254780620|r 81 ATEESFFVAECFA 93 (144)
Q Consensus 81 aie~~~~~~~C~~ 93 (144)
.+..-.....|..
T Consensus 84 ~l~~~p~V~~~~~ 96 (150)
T 2pn6_A 84 KLAQIPGVWGVYF 96 (150)
T ss_dssp HHHTSTTEEEEEE
T ss_pred HHHHCCCCEEEEE
T ss_conf 9982987408889
No 149
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=92.40 E-value=0.35 Score=26.82 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=53.5
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCEE----C---CCHHHCCHHHH
Q ss_conf 99999999855986335999999819978999999999932590573156----5454000----2---37212609999
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVRL----C---RPADQITILDV 78 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~L----a---k~~~~Itl~dI 78 (144)
-.++|-.|..+ ...|..+||+..|+|++-+.+-+++|.+.|+|+..+- ..-||.+ . ++++ ...++
T Consensus 10 D~~Il~~L~~d--~R~s~~~ia~~lg~s~~tv~~Ri~rL~~~GiI~~~~~~vd~~~lG~~~~a~i~v~~~~~~--~~~~~ 85 (152)
T 2cg4_A 10 DRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAK--DYPSA 85 (152)
T ss_dssp HHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSGG--GHHHH
T ss_pred HHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCEEEEECCHH--HHHHH
T ss_conf 99999999984--899999999998919999999999997368610058997246707631101001103302--39999
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 99971876311146
Q gi|254780620|r 79 VKATEESFFVAECF 92 (144)
Q Consensus 79 ~~aie~~~~~~~C~ 92 (144)
.+.+.....+..|.
T Consensus 86 ~~~l~~~~~V~~~~ 99 (152)
T 2cg4_A 86 LAKLESLDEVTEAY 99 (152)
T ss_dssp HHHHHTCTTEEEEE
T ss_pred HHHHHCCCHHEEEE
T ss_conf 99986183431677
No 150
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=92.38 E-value=0.2 Score=28.27 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 33599999981997899999999993259057315654540002372126
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
+.|-++||+..|+++..+.++++.|++.|+|+-.++ |+...+|++.+
T Consensus 167 ~lt~~~lA~~lg~sr~tvsr~l~~l~~~g~I~~~~~---~~i~i~d~~~L 213 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQ---RTLLLKDLQKL 213 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSS---SEEEESCHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC---CEEEECCHHHH
T ss_conf 724999999979999999999999998899997699---98998999999
No 151
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=92.19 E-value=0.17 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 3359999998199789999999999325905731
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~ 57 (144)
+.|-++||+..|+++..+.|+++.|++.|+|+..
T Consensus 163 ~lt~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 8469999999799899999999999988999988
No 152
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=92.18 E-value=0.17 Score=28.58 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 3359999998199789999999999325905731565
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~ 60 (144)
+.+-++||+..++++..+.++++.|++.|+|+..+|.
T Consensus 146 ~~t~~~iA~~lg~sr~tv~r~l~~L~~~g~I~~~~~~ 182 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGK 182 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 8879999989798899999999999988999974999
No 153
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DNA-binding, phosphoprotein, transcription regulation; NMR {Helicobacter pylori J99}
Probab=91.96 E-value=0.35 Score=26.80 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC-----CCHH----HHHHHHHHHHHC----CCEEECCCCCCCCEEC
Q ss_conf 99999999855986335999999819-----9789----999999999325----9057315654540002
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC-----ISEL----FLFKILQPLVKA----GIVETVRGRRGGVRLC 67 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~-----i~~~----~l~kil~~L~~a----gli~S~rG~~GGy~La 67 (144)
-..+|.+|+.+++..+|-++|.+..- .+.. ++.++=++|... .+|++++|. ||+|-
T Consensus 46 E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkl~~~~~~~~~I~Tvrg~--GY~le 114 (115)
T 2k4j_A 46 EYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGI--GYKLE 114 (115)
T ss_dssp HHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHHSSCCCSSCEEETTT--EEECC
T ss_pred HHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCE--EEEEE
T ss_conf 9999999985799378699999997167867783209999999999853158999869997897--68885
No 154
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Mycobacterium tuberculosis}
Probab=91.95 E-value=0.24 Score=27.77 Aligned_cols=62 Identities=27% Similarity=0.218 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 9764568999999999985598633599---99998199789999999999325905731565454000237
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~~~~~s~~---eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
|++|.++= -+-++++.+ ++.+++. ++.+..|+++.-++--++.|++.|+|++.|- ||++.-.
T Consensus 1 ~~~~arsl---i~sll~~~~-~~~is~~~Li~l~~~~Gi~~~avRtAlsRL~~~GwL~~~r~---Gr~~~~~ 65 (247)
T 3kfw_X 1 MSLTARSV---VLSVLLGAH-PAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSAD---GYRLSDR 65 (247)
T ss_dssp -CCCHHHH---HHHHHTTTT-TSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETT---EEEECHH
T ss_pred CCCCHHHH---HHHHHCCCC-CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCC---CCCCCHH
T ss_conf 98637989---999971578-87402999999999829980479999999987497450577---6323677
No 155
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=91.75 E-value=0.43 Score=26.23 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=52.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCEE------C-CCHHHCCHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156----5454000------2-372126099999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVRL------C-RPADQITILDVV 79 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~L------a-k~~~~Itl~dI~ 79 (144)
.++|-.|..+ +..|..+||+..|+|++-+.+=+++|.+.|+|..... ..=||.. . .++++. .++.
T Consensus 10 ~~Il~~L~~n--~R~s~~~ia~~~gls~~tv~~Ri~rL~~~GiI~~~~~~id~~~lg~~~~a~i~i~~~~~~~~--~~~~ 85 (150)
T 2w25_A 10 RILVRELAAD--GRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQP--DDAP 85 (150)
T ss_dssp HHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEESCTTSC--CCHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCEEEEEEEEEECCCCCH--HHHH
T ss_conf 9999999983--89999999999892989999999999868983100101680114970899999997156207--9999
Q ss_pred HHHCCCCCCCCCCC
Q ss_conf 99718763111468
Q gi|254780620|r 80 KATEESFFVAECFA 93 (144)
Q Consensus 80 ~aie~~~~~~~C~~ 93 (144)
+.+..-..+..|..
T Consensus 86 ~~l~~~p~V~~~~~ 99 (150)
T 2w25_A 86 ARLEHIEEVESCYS 99 (150)
T ss_dssp HHHTTCTTEEEEEE
T ss_pred HHHHCCCEEEEEEE
T ss_conf 99861684728999
No 156
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=91.58 E-value=0.38 Score=26.57 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 9999985598633599999981-----99789999999999325905731565454
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~-----~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
++-+|...++.+.|+.+|-+.. .++.+-+.+.|..|..+|+|......+|.
T Consensus 22 Il~~l~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~i~~~~~~ 77 (83)
T 2fu4_A 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGK 77 (83)
T ss_dssp HHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999958999999999999987518998760499999999988988999739995
No 157
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=91.58 E-value=0.38 Score=26.60 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHH-----CC----CHHHHHHHHHHHHHC---CCEEECCCCCCCCEECC
Q ss_conf 999999985598633599999981-----99----789999999999325---90573156545400023
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEAC-----CI----SELFLFKILQPLVKA---GIVETVRGRRGGVRLCR 68 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~-----~i----~~~~l~kil~~L~~a---gli~S~rG~~GGy~Lak 68 (144)
..+|-+|+.++++.+|-++|.+.. .. =..++.++-++|... .+|+++||. ||+|..
T Consensus 165 ~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~rtvd~~I~rLRkKL~~~~~~~~I~tvrg~--GY~l~~ 232 (233)
T 1ys7_A 165 FDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGV--GFVLRM 232 (233)
T ss_dssp HHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC--CCCEEEETTT--EEEECC
T ss_pred HHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCC--EEEEEE
T ss_conf 89999998537888819999999848677888476999999999971778999809996272--189986
No 158
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=91.54 E-value=0.46 Score=26.07 Aligned_cols=63 Identities=21% Similarity=0.070 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 986335999999819978999999999932590573156545400023721260999999971
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
+...++.++++...+++..-++++++.|...|-|.-...-+++|.+.++--+--...|...++
T Consensus 14 ~~~gl~~~el~~~~~l~~~~l~~~L~~L~~~g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~L~ 76 (135)
T 2v9v_A 14 HREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALE 76 (135)
T ss_dssp CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHH
T ss_conf 768989999999949899999999999850895899950796599879999999999999999
No 159
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.39 E-value=0.31 Score=27.08 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCE------ECCCHHHCCHHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156----545400------023721260999999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVR------LCRPADQITILDVVK 80 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~------Lak~~~~Itl~dI~~ 80 (144)
.++|-.|..+ ...|..+||+..|+|++-+.+-+++|.+.|+|....- ..-||. +..+++ ...++.+
T Consensus 7 ~~Il~~L~~d--~r~s~~~ia~~~gls~~tv~~Ri~rL~~~GvI~~~~~~id~~~lg~~~~a~v~i~~~~~--~~~~v~~ 82 (141)
T 1i1g_A 7 KIILEILEKD--ARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPE--KLFEVAE 82 (141)
T ss_dssp HHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGG--GHHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECHHHHCCCEEEECCCCCCCC--HHHHHHH
T ss_conf 9999999984--89899999999892999999999997339859999999987991970552001245740--4999999
Q ss_pred HHCCCCCCCCCCC
Q ss_conf 9718763111468
Q gi|254780620|r 81 ATEESFFVAECFA 93 (144)
Q Consensus 81 aie~~~~~~~C~~ 93 (144)
.+..-..+..|..
T Consensus 83 ~l~~~p~V~~v~~ 95 (141)
T 1i1g_A 83 KLKEYDFVKELYL 95 (141)
T ss_dssp HHHHSTTEEEECC
T ss_pred HHHCCCCEEEEEE
T ss_conf 9727981999999
No 160
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.28 E-value=0.53 Score=25.72 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=40.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEECCCCCCCCE
Q ss_conf 9999985598633599999981-----9978999999999932590573156545400
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVKAGIVETVRGRRGGVR 65 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~-----~i~~~~l~kil~~L~~agli~S~rG~~GGy~ 65 (144)
++-.|.. .+++.|+.+|.+.. .++++.+.+.|..|.+.|+|......+|...
T Consensus 16 Il~~l~~-~~~~~sa~ei~~~l~~~~~~i~~aTVYR~L~~L~~~gli~~i~~~~~~~~ 72 (131)
T 2o03_A 16 ISTLLET-LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESV 72 (131)
T ss_dssp HHHHHHH-CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEE
T ss_pred HHHHHHC-CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf 9999980-89998999999999975889988899999999986894899980899589
No 161
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.27 E-value=0.82 Score=24.59 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEC
Q ss_conf 6456899999999998559-8633599999981997899999999993259057315654540002
Q gi|254780620|r 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 (144)
Q Consensus 3 is~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~La 67 (144)
+|..-|.=-+++.+|...+ +.++++.+||+..+++..-+-++|-.|.+.|.|.-..|.-==|+|+
T Consensus 9 ls~s~d~e~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~lt 74 (77)
T 1qgp_A 9 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 74 (77)
T ss_dssp THHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEEC
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEC
T ss_conf 766858899999999965898760299999996988888899999999878953069989932605
No 162
>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=91.25 E-value=0.17 Score=28.66 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=45.3
Q ss_pred HHHHHHHHH--CC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCH
Q ss_conf 999999985--59-8633599999981997899999999993259057315-654540002372
Q gi|254780620|r 11 IRVLMYCAI--HN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~--~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~ 70 (144)
+.++.++.. .+ ++...+..||++.++.++.+-.-|++|-.||+|+|.- |-+|-|.=...+
T Consensus 27 leAi~hI~~eL~G~EG~lvASkIADrvGITRSVIVNALRKlESAGvIESRSlGMKGTyIkvln~ 90 (102)
T 2b0l_A 27 LEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNN 90 (102)
T ss_dssp HHHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCH
T ss_pred HHHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECH
T ss_conf 9999999997288764363075545409718999999987653462341257777147765068
No 163
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=91.09 E-value=0.27 Score=27.48 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=38.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9999999855986335999999819978999999999932590573156
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
+.+|.+|....+.-+++++|+++.+.-+.+|.|++++|+.++++.-.|-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRS 455 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEEC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHC
T ss_conf 9999998872366600999997735784215899997565323001212
No 164
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=90.96 E-value=0.71 Score=24.96 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHHHHHH--CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCC
Q ss_conf 9999985--5986335999999819978999999999932590573-1565
Q gi|254780620|r 13 VLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60 (144)
Q Consensus 13 ~l~~La~--~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S-~rG~ 60 (144)
.++..|. +.+ -.|=.|||+++++|++.+.|+|+.-++.|||+- +..+
T Consensus 9 ll~~vA~lYY~~-g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~ 58 (315)
T 2w48_A 9 LIVKIAQLYYEQ-DMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp HHHHHHHHHHTS-CCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999824-99999999987959999999999999759379999489
No 165
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B
Probab=90.88 E-value=0.72 Score=24.92 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 999999985598633599999981997899999999993259057315654
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
+.+.+.|..+.....|.++|++..++|...+.+.|..|.+.+++.-..+..
T Consensus 590 ~q~~iLllfn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~l~~~~~~~ 640 (760)
T 1ldj_A 590 FQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENA 640 (760)
T ss_dssp HHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf 999999984778888899999877909999999999997579678338988
No 166
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=90.79 E-value=0.29 Score=27.27 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC-----CC----HHHHHHHHHHHHHCC----CEEECCCCCCCCEEC
Q ss_conf 99999999855986335999999819-----97----899999999993259----057315654540002
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC-----IS----ELFLFKILQPLVKAG----IVETVRGRRGGVRLC 67 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~-----i~----~~~l~kil~~L~~ag----li~S~rG~~GGy~La 67 (144)
-..+|.+|+.++++.+|-++|.+..- .+ ..|+.++=++|...+ +|+++||. ||+|-
T Consensus 161 E~~lL~~L~~~~~~vvsr~~l~~~vwg~~~~~~~~tv~~~I~rLRkKL~~~~~~~~~I~Tvrg~--GY~l~ 229 (230)
T 2oqr_A 161 EFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGL--GYKLE 229 (230)
T ss_dssp HHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSSSSSCSSEEEETTT--EEEEC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC--CEEEE
T ss_conf 9999999981899862699999986397768886779999999999742178999759987372--18980
No 167
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=90.77 E-value=0.92 Score=24.30 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH------HHCCCEEECCCCCCCCEECCCHHHCC
Q ss_conf 976456899999999998559863359999998199789999999999------32590573156545400023721260
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL------VKAGIVETVRGRRGGVRLCRPADQIT 74 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L------~~agli~S~rG~~GGy~Lak~~~~It 74 (144)
||+.+..+ =+.+.-||..++.+..+....+++.+.....++--+..+ ..-|.|+..+|+.||.+..-...+-.
T Consensus 1 mk~~r~~r-~~~~~~~l~~~p~~~~~l~~~~~~~~~aks~iSed~~i~~~~~~~~~~g~i~~~~g~~gg~~~ip~~~~~~ 79 (291)
T 1o57_A 1 MKFRRSGR-LVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAE 79 (291)
T ss_dssp -CCCHHHH-HHHHHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSEEEEEECSTTCEEEEEECCCHHH
T ss_pred CCCCCCHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHH
T ss_conf 99650148-99999999719986263899999861201133018999999875448870999689741699967888788
Q ss_pred ----HHHHHHHHCCCCCCC
Q ss_conf ----999999971876311
Q gi|254780620|r 75 ----ILDVVKATEESFFVA 89 (144)
Q Consensus 75 ----l~dI~~aie~~~~~~ 89 (144)
+.++.+-+..+.++.
T Consensus 80 ~~~~~~~l~~~l~~~~ril 98 (291)
T 1o57_A 80 AEEFVQTLGQSLANPERIL 98 (291)
T ss_dssp HHHHHHHHHHHHTCGGGEE
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999965999525
No 168
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=90.66 E-value=0.056 Score=31.49 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEC
Q ss_conf 98633-599999981997899999999993259057315654540002
Q gi|254780620|r 21 NDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 (144)
Q Consensus 21 ~~~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~La 67 (144)
+|... |-.+||+..++|+.-+++-++.|...|+|.+.+|+ |=|...
T Consensus 36 ~G~~LPsE~~La~~~~VSR~TvR~Al~~L~~eGlI~~~~G~-Gt~V~~ 82 (247)
T 2ra5_A 36 PGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGV-GTQVVH 82 (247)
T ss_dssp --------------------------------CEEEEEC---------
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC-EEEECC
T ss_conf 91999389999988697989999999999976985865895-699999
No 169
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=90.66 E-value=0.4 Score=26.45 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC----CEECC
Q ss_conf 9863359999998199789999999999325905731565454----00023
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCR 68 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG----y~Lak 68 (144)
+++-+..++|....+++.+.+.|+|..|...++|++++..+.. |.|..
T Consensus 33 G~~GIW~kdIk~ktnl~~~~v~K~LK~LEsk~lIK~VksV~~~~rK~YmL~~ 84 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYN 84 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEESS
T ss_pred CCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEC
T ss_conf 7676339999988299889999999999746980654034689807999724
No 170
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=90.56 E-value=0.47 Score=26.04 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=51.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCE------ECCCHHHCCHHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156----545400------023721260999999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVR------LCRPADQITILDVVK 80 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~------Lak~~~~Itl~dI~~ 80 (144)
.++|-.|.. +...|..+||+..|+|++-+.+=+++|.+.|+|..... ..-||. +..+++ ...++.+
T Consensus 10 ~~IL~~L~~--d~R~s~~~iA~~lglS~~tv~~Ri~rL~~~GiI~~~~~~vd~~~lg~~~~~~v~~~~~~~--~~~~~~~ 85 (151)
T 2cyy_A 10 KKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG--KYSEVAS 85 (151)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTT--CHHHHHH
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCEEEEEEEECCC--CHHHHHH
T ss_conf 999999998--489999999999891999999999999845982003799889997898569999996354--0589999
Q ss_pred HHCCCCCCCCCC
Q ss_conf 971876311146
Q gi|254780620|r 81 ATEESFFVAECF 92 (144)
Q Consensus 81 aie~~~~~~~C~ 92 (144)
.+..-..+..|.
T Consensus 86 ~l~~~p~V~~~~ 97 (151)
T 2cyy_A 86 NLAKYPEIVEVY 97 (151)
T ss_dssp HHHTCTTEEEEE
T ss_pred HHHCCCCEEEEE
T ss_conf 997699930999
No 171
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A*
Probab=90.55 E-value=0.33 Score=26.96 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 3359999998199789999999999325905731565454000237212
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
+.|-++||+..|+++..+.++++.|++.|+|...+| ..-..+++.
T Consensus 177 ~~t~~~lA~~lg~s~~tvsr~l~~L~~~g~I~~~~~----~i~I~d~~~ 221 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGK----SVLISDSER 221 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT----EEEESCHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----EEEECCHHH
T ss_conf 789999998879899999999999998898996399----999888999
No 172
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=90.47 E-value=0.34 Score=26.85 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=51.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCEE------CC-CHHHCCHHHHHH
Q ss_conf 999999855986335999999819978999999999932590573156----5454000------23-721260999999
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVRL------CR-PADQITILDVVK 80 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~L------ak-~~~~Itl~dI~~ 80 (144)
++|-.|. .+...|..+||+..|+|++-+.+=+++|.+.|+|..... ..-||.. .- +...-.+.++.+
T Consensus 7 ~IL~~L~--~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~id~~~lg~~~~a~i~v~~~~~~~~~~~~~~~ 84 (162)
T 3i4p_A 7 KILRILQ--EDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKRFSE 84 (162)
T ss_dssp HHHHHHT--TCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHHHHHH
T ss_pred HHHHHHH--HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 9999999--84899999999998929999999999998479823237850664554647999999852345677999999
Q ss_pred HHCCCCCCCCCC
Q ss_conf 971876311146
Q gi|254780620|r 81 ATEESFFVAECF 92 (144)
Q Consensus 81 aie~~~~~~~C~ 92 (144)
.+..-..+..|.
T Consensus 85 ~l~~~p~V~~~~ 96 (162)
T 3i4p_A 85 VVSEFPEVVEFY 96 (162)
T ss_dssp HHHHCTTEEEEE
T ss_pred HHHHCCCEEEEE
T ss_conf 986197489999
No 173
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis H37RV}
Probab=90.44 E-value=0.57 Score=25.54 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC-----CCHH----HHHHHHHHHHH--CCCEEECCCCCCCCEECCCH
Q ss_conf 99999999855986335999999819-----9789----99999999932--59057315654540002372
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC-----ISEL----FLFKILQPLVK--AGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~-----i~~~----~l~kil~~L~~--agli~S~rG~~GGy~Lak~~ 70 (144)
-..+|.+|+.++++.+|-++|.+..- .+.. ++.++=++|.. ..+|.++||. ||+|..|-
T Consensus 39 E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~~~~I~Tv~g~--GY~l~~p~ 108 (110)
T 2pmu_A 39 EFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGV--GYVLREPR 108 (110)
T ss_dssp HHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCCSSSCCEEEETTT--EEEECCC-
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC--CEEECCCC
T ss_conf 99999999977997657999985125777788848899999999997377999809995890--27978876
No 174
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.37 E-value=0.51 Score=25.83 Aligned_cols=81 Identities=10% Similarity=0.142 Sum_probs=53.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCEEC----CCHHHCCHHHHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156----54540002----372126099999997
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVRLC----RPADQITILDVVKAT 82 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~La----k~~~~Itl~dI~~ai 82 (144)
.++|-.|.. +...|..+||+..|+|++-+..=+++|.++|+|..... ..-||... ...+.=...++.+.+
T Consensus 30 ~~IL~~L~~--d~R~s~~~iA~~lglS~~tV~~Ri~rL~~~GiI~~~~~~vd~~~lg~~~~a~v~~~~~~~~~~~~~~~l 107 (171)
T 2e1c_A 30 KKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNL 107 (171)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 999999998--389999999999891999999999999847990579999888996996289999874454058999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 18763111468
Q gi|254780620|r 83 EESFFVAECFA 93 (144)
Q Consensus 83 e~~~~~~~C~~ 93 (144)
.....+..|..
T Consensus 108 ~~~p~V~~~~~ 118 (171)
T 2e1c_A 108 AKYPEIVEVYE 118 (171)
T ss_dssp HTSTTEEEEEE
T ss_pred HCCCCEEEEEE
T ss_conf 75998789999
No 175
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=90.36 E-value=0.6 Score=25.42 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=54.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCEEC----CCHHHCCHHHHHHH
Q ss_conf 99999999855986335999999819978999999999932590573156----54540002----37212609999999
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVRLC----RPADQITILDVVKA 81 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~La----k~~~~Itl~dI~~a 81 (144)
-.+++-.|.. +...|..+||+..|+|++-+.+=+++|.++|+|....- ..-||..+ .....-...++.+.
T Consensus 11 D~~Il~~L~~--d~R~s~~eia~~lgls~~tv~~Ri~~L~~~gvI~~~~~~l~~~~lg~~~~~i~~~~~~~~~~~~v~~~ 88 (151)
T 2dbb_A 11 DMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKVISE 88 (151)
T ss_dssp HHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 9999999988--59999999999989699999999999996798621348963433432168888870475302478775
Q ss_pred HCCCCCCCCCCC
Q ss_conf 718763111468
Q gi|254780620|r 82 TEESFFVAECFA 93 (144)
Q Consensus 82 ie~~~~~~~C~~ 93 (144)
+..-..+..|..
T Consensus 89 l~~~p~V~~v~~ 100 (151)
T 2dbb_A 89 ISDIEYVKSVEK 100 (151)
T ss_dssp HTTCTTEEEEEE
T ss_pred CCCCCCEEEEEE
T ss_conf 047983799999
No 176
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.03 E-value=0.047 Score=31.96 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=42.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCC
Q ss_conf 9999985598633599999981997899999999993259057315-65454000237
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~ 69 (144)
++-+|.. .+.+|.++|++.+++++.-+.++|..|++.|+|..+. |++--|+|++.
T Consensus 521 Il~~l~~--~g~it~~ei~~llgls~~~v~~~L~~L~~~G~I~~~G~gR~~~Y~L~~~ 576 (583)
T 3lmm_A 521 AMLWLSE--VGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAVGGGRSRRYRLVEL 576 (583)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEE
T ss_conf 9999997--5993899999997879999999999999889778866887748999862
No 177
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=89.77 E-value=0.62 Score=25.33 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 9863359999998199789999999999325905731
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~ 57 (144)
..+++|-.|||+.+++|++.+.+++..|.+.|+|.-.
T Consensus 27 ~~g~iSR~ela~~~gls~~Tvs~iv~~L~~~gli~e~ 63 (406)
T 1z6r_A 27 QLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp SSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 8599189999988795999999999999988988961
No 178
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=89.41 E-value=0.47 Score=26.02 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 33599999981997-89999999999325905731565454000237212
Q gi|254780620|r 24 PNRISQIAEACCIS-ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 24 ~~s~~eIA~~~~i~-~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
+.|-++||+..+++ +..+.|+|+.|++.|+|+..+|. + ...|++.
T Consensus 169 ~~t~~~lA~~lg~s~r~~vsR~L~~L~~~giI~~~~~~---i-~I~D~~~ 214 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSC---F-YVQNLDY 214 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTE---E-EESCHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCE---E-EECCHHH
T ss_conf 76799999996898188999999999988979976999---9-9888999
No 179
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=89.18 E-value=0.36 Score=26.73 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=40.2
Q ss_pred CCCCHHHHHHH---HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 97645689999---99999985598633599999981997899999999993259057
Q gi|254780620|r 1 MHLTKRTDYGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 (144)
Q Consensus 1 Mkis~~~~yAi---~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~ 55 (144)
|.++++.+.+. .++-|+..+-.++.++++||+..++|+.++.+.+..-....+.+
T Consensus 1 m~~~~~~~~~~~i~~i~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~g~s~~~ 58 (129)
T 1bl0_A 1 MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQ 58 (129)
T ss_dssp --------CHHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
T ss_conf 9877466609999999999998248999999999998929999999999986909447
No 180
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=89.03 E-value=0.37 Score=26.63 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH
Q ss_conf 3359999998199789999999999325905731565454000237212
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~ 72 (144)
++|-++||+..|+++..+.++|+.|++.|++. ++ |.. .-.|++.
T Consensus 178 ~~t~~~iA~~lgisr~tvsR~l~~L~~~gii~--~~--~~i-~I~d~~~ 221 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAGVTV--KR--NHA-EIEDIAL 221 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGTEEC--CT--TEE-EESCHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE--EC--CEE-EECCHHH
T ss_conf 88999999886998999999999999799399--79--989-9978999
No 181
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=88.99 E-value=0.57 Score=25.54 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=38.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 3599999981997899999999993259057315654540002372126
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
.+...|+...|+|...+++.+..|.+.|+|+.. .+||.+.....++
T Consensus 21 ~~~T~i~~~~nLs~~~~~~yl~~L~~~GLI~~~---~~~y~lTekG~~~ 66 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQYMLTKKGEEL 66 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHH
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEC---CCEEEECCCHHHH
T ss_conf 977599998199999999999999988892417---9846988238999
No 182
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=88.98 E-value=0.82 Score=24.60 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH------CCCEEECCCCCCCCEECCCHHH
Q ss_conf 99999999855986335999999819978999999999932------5905731565454000237212
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK------AGIVETVRGRRGGVRLCRPADQ 72 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~------agli~S~rG~~GGy~Lak~~~~ 72 (144)
.|-++++.+ ++|+|.++|++..+++...++..+..|.+ .|+-- .-.+|||+|.-.|+-
T Consensus 19 iIEAlLF~s---~epvs~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~g~~l--~~~~ggy~l~t~~~~ 82 (219)
T 2z99_A 19 VLEALLLVI---DTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDL--RHTSEGWRMYTRARF 82 (219)
T ss_dssp HHHHHHHHC---SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEE--EEETTEEEEEECGGG
T ss_pred HHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEE--EEECCEEEEEECHHH
T ss_conf 999999971---7997999999883898899999999999987426663589--996895899957566
No 183
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=88.96 E-value=0.5 Score=25.85 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 9863359999998199789999999999325905731
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~ 57 (144)
..+++|=.|||+.++++++-+.+|+..|..+|+|...
T Consensus 50 ~~g~iSR~ela~~tgLS~~Tvs~iv~~Li~~glv~E~ 86 (429)
T 1z05_A 50 QKGPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8499189999988795999999999999988988970
No 184
>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} SCOP: a.4.5.72 d.74.4.2
Probab=88.85 E-value=0.99 Score=24.12 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHH
Q ss_conf 999999999985598633599999981997899999999993259057315654540002372126099999997
Q gi|254780620|r 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 (144)
Q Consensus 8 ~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~ai 82 (144)
++.++++.+ .+ +|+-=..+|+.++++...++..+..|+..|+|++.+ +|..|...-++ +.+-++.+
T Consensus 18 ~~vl~~l~l---l~-qPiGRr~La~~L~l~Er~vRt~~~~Lk~~gLI~~~~---~G~~lT~~G~~--~l~~l~~~ 83 (200)
T 2p8t_A 18 EDVLAVIFL---LK-EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ---RGHFLTLKGKE--IRDKLLSM 83 (200)
T ss_dssp HHHHHHHHH---TT-SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CEEECHHHHH--HHHHHHTT
T ss_pred HHHHHHHHH---HC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC---CCEEECHHHHH--HHHHHHHH
T ss_conf 999999998---35-986689999983973899999999997689589538---84288573999--99999999
No 185
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.76 E-value=1.1 Score=23.74 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 999999999985598633599999981997899999999993259057315654
Q gi|254780620|r 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 8 ~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
|+-+--++.-| +++-+-+++|-.+.+++.+.+.|+|..|-..+||+|++...
T Consensus 39 E~lVY~~Ie~a--Gn~GIWtkdIk~ktnL~~~~l~K~LK~LEskklIKsVksV~ 90 (95)
T 2yu3_A 39 EKLVYQIIEDA--GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVS 90 (95)
T ss_dssp HHHHHHHHHHH--TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECCSC
T ss_pred HHHHHHHHHHH--CCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99999999981--76774499999881998899999999986258836411335
No 186
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=87.97 E-value=1 Score=24.05 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 99999985598633599999981-----99789999999999325905731565454
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~-----~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.++-+|...+.++.|+.+|-+.. .++.+.+.+.|..|.+.|+|......+|-
T Consensus 21 ~Il~~l~~~~~~h~sa~el~~~l~~~~~~i~~aTVYR~L~~l~~~gii~~i~~~~~~ 77 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGK 77 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEECCCE
T ss_conf 999999838999999999999998618886779999999999875468999717972
No 187
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcription regulatory protein, plasmid, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=87.97 E-value=0.92 Score=24.29 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC---CCCCCCEECC
Q ss_conf 98633599999981997899999999993259057315---6545400023
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR---GRRGGVRLCR 68 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r---G~~GGy~Lak 68 (144)
.+.|+.+.+||+..+++.-.++--|..|...|+|+-.+ |..|-|+|..
T Consensus 21 ~~~PvktR~IADaaglsiYq~r~YL~~L~~~gvvEk~naGKG~~g~WrLv~ 71 (77)
T 2jt1_A 21 DGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRLLE 71 (77)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEEECC
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHH
T ss_conf 789721333343424209999999999998466411358998731013433
No 188
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=87.96 E-value=1.5 Score=23.05 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC---CCCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 9999999998559863359999998199789999999999325905731---56545400023721260999999971
Q gi|254780620|r 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV---RGRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 9 yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~---rG~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
+.+.+|..|. . ++..-.+|.+..++|+..|.+-|..|...|+|.-+ .++.--|.|.... ..|..|+.++.
T Consensus 25 W~~~Il~~l~--~-G~~RF~el~~~lgis~~~Ls~rL~~L~~~GLv~r~~~~~p~r~eY~LT~~G--~~L~pil~~l~ 97 (146)
T 2f2e_A 25 WSMLIVRDAF--E-GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKG--RALFPLLVAIR 97 (146)
T ss_dssp SHHHHHHHHH--T-TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHH--HTTHHHHHHHH
T ss_pred CHHHHHHHHH--C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECHHH--HHHHHHHHHHH
T ss_conf 8999999997--3-996799999880977899999999999889806766899981588468608--89999999999
No 189
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=87.93 E-value=1.5 Score=23.04 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=49.8
Q ss_pred HHHHHHHHHHH--HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 99999999998--5598633599999981997899999999993259057315654540002372
Q gi|254780620|r 8 DYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 8 ~yAi~~l~~La--~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
....|+|..+- ..+-+-++.+.|++..+++..-+.++++.|.+.++|.-...+.=||+|.-..
T Consensus 12 ~~~~r~l~~~e~~~~~~e~vp~~~i~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~y~gy~lt~~g 76 (282)
T 1zar_A 12 KHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEGSTFTFIG 76 (282)
T ss_dssp HHHHHHHHHHHTTTTTCSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECC
T ss_conf 77889999999564677578899999995898125889999986583515116786038975075
No 190
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=87.90 E-value=1.3 Score=23.37 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHH
Q ss_conf 8999999999985598633599999981----997899999999993259057315-65454000237212609999999
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEAC----CISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKA 81 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~----~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~a 81 (144)
++|.| |-.|-.++ ++|+.+|++.. +.+++-+..+|..|.+.|+|+..+ |+.-=|+-..+.++-....+...
T Consensus 11 ~E~~V--M~~LW~~~--~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~KG~v~r~~~g~~~~Y~~~~~~~~~~~~~~~~~ 86 (123)
T 1okr_A 11 AEWEV--MNIIWMKK--YASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNF 86 (123)
T ss_dssp HHHHH--HHHHHHHS--SEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHCCC--CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 99999--99998379--979999999975123875424999999999889878873488158874488999999999999
Q ss_pred H
Q ss_conf 7
Q gi|254780620|r 82 T 82 (144)
Q Consensus 82 i 82 (144)
+
T Consensus 87 ~ 87 (123)
T 1okr_A 87 I 87 (123)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 191
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69
Probab=87.77 E-value=1.5 Score=22.98 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEECCCC----CCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 99999999985598633599999981-99789999999999325905731565----45400023721260999999971
Q gi|254780620|r 9 YGIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGR----RGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 9 yAi~~l~~La~~~~~~~s~~eIA~~~-~i~~~~l~kil~~L~~agli~S~rG~----~GGy~Lak~~~~Itl~dI~~aie 83 (144)
+.+.++-.|. . ++..-.+|.+.. ++|+..|.+-|..|...|+|.=..-+ .--|.|. +.-.+|..|+.++.
T Consensus 26 W~~~Il~~l~--~-g~~rF~el~~~l~~iS~~~Ls~rLk~Le~~glI~r~~~~~~p~~v~Y~LT--~~G~~L~~il~~l~ 100 (107)
T 2fsw_A 26 WTLLIIFQIN--R-RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLT--PLGEKVLPIIDEIA 100 (107)
T ss_dssp SHHHHHHHHT--T-SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC--HHHHTTHHHHHHHH
T ss_pred CHHHHHHHHH--C-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEC--CCHHHHHHHHHHHH
T ss_conf 8999999982--5-99889999877411277899999999998878154567999995577468--14889999999999
No 192
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=87.74 E-value=0.64 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHCCC------HHHHHHHHHHHHHCCCEEECC
Q ss_conf 8633599999981997------899999999993259057315
Q gi|254780620|r 22 DYPNRISQIAEACCIS------ELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~------~~~l~kil~~L~~agli~S~r 58 (144)
+++.|++|||++.+++ +..|.++|+.|...|++.-..
T Consensus 60 ~~~lt~~eLA~~~g~~~~~~~~~~~L~RlLr~L~~~g~~~~~~ 102 (372)
T 1fp1_D 60 GAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTT 102 (372)
T ss_dssp TCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 8986999999865999556644589999999999678330204
No 193
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=86.96 E-value=1.7 Score=22.70 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECC
Q ss_conf 335999999819978999999999932590573156545400023
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak 68 (144)
.++..+++.+.+++..-+.+++..|..+|-|......+++|.+..
T Consensus 17 gl~~~e~~~~~~l~~~~~~~~L~~l~~~~~v~~~~~~~~~~~~~~ 61 (258)
T 1lva_A 17 GLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAIST 61 (258)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECH
T ss_conf 879999999959899999999999885797799955894599879
No 194
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=86.54 E-value=1.5 Score=23.09 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 568999999999985598--63359999998199789999999999325905731565454000237
Q gi|254780620|r 5 KRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 5 ~~~~yAi~~l~~La~~~~--~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
..++.+..++..+|.... ...+..+++...+++..-+.+.+..|.+.|+|... +|+|++..|
T Consensus 287 ~~~~~~~~iL~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~lI~~~---~~~Y~i~~p 350 (357)
T 2fna_A 287 IARKRYLNIMRTLSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE---GEKYCPSEP 350 (357)
T ss_dssp GGHHHHHHHHHHHTTCBCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES---SSCEEESSH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE---CCEEEECCH
T ss_conf 1889999999998667983239899999742799999999999999978988998---999998988
No 195
>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A*
Probab=86.01 E-value=1.1 Score=23.93 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=37.4
Q ss_pred HHHHHHHHH------HCC-CCCCCHHHHHHHHCCC----HHHHHHHHHHHHHCCCEEECCC
Q ss_conf 999999998------559-8633599999981997----8999999999932590573156
Q gi|254780620|r 10 GIRVLMYCA------IHN-DYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 10 Ai~~l~~La------~~~-~~~~s~~eIA~~~~i~----~~~l~kil~~L~~agli~S~rG 59 (144)
+|++.+.|. .++ +.+.|.+|||++++++ +.+|+++|..|...|++.-..+
T Consensus 35 ~L~~AveLglfd~L~~~g~~~~ls~~elA~~l~~~~~~~~~lL~rlLr~L~~~gll~~~~~ 95 (365)
T 1kyz_A 35 ILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVR 95 (365)
T ss_dssp HHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9999998792889985699988799999986387888658999999999996583883035
No 196
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=85.97 E-value=1.9 Score=22.39 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=35.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCC-EECCCHHHCCH
Q ss_conf 3599999981997899999999993259057315654540-00237212609
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV-RLCRPADQITI 75 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy-~Lak~~~~Itl 75 (144)
.+..+||+..++|..++.|+++..+..|-+... +.||. .-...++....
T Consensus 49 ~s~r~IArrf~VS~stV~kii~r~retG~~~p~--~~gg~rp~~~t~~~~~~ 98 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPG--VIGGSKPKVATPKVVEK 98 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCC--CCCCCCCSSSCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCHHHHHH
T ss_conf 999999998894999999999999981888888--77898998679999999
No 197
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=85.83 E-value=0.33 Score=26.94 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=37.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH---HHHCCCEEECCCCCCCCE-ECCC---HHHCCHHHHHHHHCCCC
Q ss_conf 35999999819978999999999---932590573156545400-0237---21260999999971876
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQP---LVKAGIVETVRGRRGGVR-LCRP---ADQITILDVVKATEESF 86 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~---L~~agli~S~rG~~GGy~-Lak~---~~~Itl~dI~~aie~~~ 86 (144)
+.=.|||+..+.-|+.+-=|++. ..+.=+|+|.||- |||. ..|= -+.--+..+++.+++.+
T Consensus 25 I~R~eLA~~F~CvPSQINYVl~TRFT~e~GY~VESkRGG-GGyIRI~kv~~~~~~~~~~~l~~~ig~~i 92 (155)
T 3h0d_A 25 IKRSEIANKFRCVPSQINYVINTRFTLERGYIVESKRGG-GGYIRIMKVKTKSEAQLIDQLLELIDHRI 92 (155)
T ss_dssp ECHHHHHHHTTSCTHHHHHHHHHHSSGGGTEEEEEECST-TCEEEEEEEEECTTHHHHHHHHTTCCSCC
T ss_pred EEHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEECCC-CCEEEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 648988873696753272665466469888489864289-85599999567780889999999865746
No 198
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=85.79 E-value=1.3 Score=23.35 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999855986335999999819978999999999932590
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agl 53 (144)
-+++-|+..|-.++++++++|+..++|+.++.+++.....-.+
T Consensus 8 ~~v~~~i~~~~~~~~sl~~la~~~~~s~~~l~r~fk~~~g~s~ 50 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHF 50 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCH
T ss_conf 9999999985589999999999989299999999999989787
No 199
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=85.72 E-value=0.12 Score=29.42 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHH
Q ss_conf 335999999819978999999999932590573156545400023721
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~ 71 (144)
+.|-++||+..|+++..+.++++.|++.|+|+..+| .+++-++|.
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l~~L~~~g~I~~~~~---~i~Il~~~~ 208 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEKHGR---RIKVLKNPF 208 (213)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC---EEEEECCHH
T ss_conf 568999999979899999999999997898998799---999967778
No 200
>3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum}
Probab=85.57 E-value=1.3 Score=23.40 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=32.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 9998559863359999998199789999999999325905731
Q gi|254780620|r 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 (144)
Q Consensus 15 ~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~ 57 (144)
-.|+. .++..+..+||+..++|...+.+++..|.+++||+.+
T Consensus 394 ~~L~y-~DG~~sl~dIa~~~~~~~~~v~~~~~~L~~~~Li~~v 435 (435)
T 3k9t_A 394 WVLNM-SDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLKLV 435 (435)
T ss_dssp HHHHH-CEEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEC
T ss_pred HHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 89973-5899989999999791999999999999987890529
No 201
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=85.56 E-value=1.5 Score=23.04 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 999999985598633599999981997899999999993259057
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~ 55 (144)
.+++-||-.+-.+++++++||+..++|+.++.+.++.-....+-+
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~g~s~~~ 54 (113)
T 3oio_A 10 TEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSK 54 (113)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHH
T ss_conf 999999997558999999999998919999999998607999999
No 202
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=85.54 E-value=1.1 Score=23.94 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 633599999981997899999999993259057315
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r 58 (144)
+|+|=.|||+.+++|++-+.+++..|.+.|+|....
T Consensus 32 gpiSR~eLa~~tgLS~~Tvs~iv~~L~~~gli~e~~ 67 (380)
T 2hoe_A 32 SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 995999999888959999999999999889889828
No 203
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=85.15 E-value=1.2 Score=23.63 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEE
Q ss_conf 99999998559863359999998199789999999999325905731565454000
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~L 66 (144)
+|+|-.|...+-..+||++||+..++++..++|=|+.+-.-| +||. ||.-
T Consensus 19 ~r~L~~l~~~g~~~iSS~~La~~~gi~~~qVRKDls~fG~~G----~~g~--GY~V 68 (212)
T 3keo_A 19 YRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELG----RRGF--GYDV 68 (212)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTTGGGT----TTSS--SEEH
T ss_pred HHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHHCCCC----CCCC--CCCH
T ss_conf 999999988698689799999996989999998998862179----9998--9349
No 204
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=84.97 E-value=1.3 Score=23.36 Aligned_cols=44 Identities=20% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99999985598633599999981997899999999993259057
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~ 55 (144)
++.-||..|-..++++++||+..++|+.++.+++.......+.+
T Consensus 6 ri~~~i~~~~~~~~~~~~la~~~~~S~~~l~r~fk~~~g~s~~~ 49 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYSPMA 49 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99999987328999999999998919999999999998919689
No 205
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=84.91 E-value=1.5 Score=23.06 Aligned_cols=38 Identities=21% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999855986335999999819978999999999
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
.=+++-||..|-..+++.+++|+..++|+.++.++++.
T Consensus 9 ~~ri~~~i~~~~~~~~~l~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999867589999999999989399999999998
No 206
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39
Probab=84.87 E-value=2.2 Score=22.08 Aligned_cols=81 Identities=22% Similarity=0.198 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHH
Q ss_conf 764568999999999985598633599999981----997899999999993259057315-654540002372126099
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC----CISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITIL 76 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~----~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~ 76 (144)
++.+-++.=..+|-.+-.. ++++|+.+|.+.. +.+++-+..+|..|.+.|+|+..+ |+.==|.-..+.++..-.
T Consensus 3 k~~~L~~~E~~IM~ilW~~-~~~~t~~eI~~~l~~~~~~~~sTV~t~L~rL~~KG~l~~~~~Gr~~~Y~~~vs~e~~~~~ 81 (138)
T 2g9w_A 3 KLTRLGDLERAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDELVAG 81 (138)
T ss_dssp CGGGCCHHHHHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 6687889999999999848-999279999998710479948799999999997794031127983688746889999999
Q ss_pred HHHHHHC
Q ss_conf 9999971
Q gi|254780620|r 77 DVVKATE 83 (144)
Q Consensus 77 dI~~aie 83 (144)
.+-+.++
T Consensus 82 ~~~~~l~ 88 (138)
T 2g9w_A 82 LMVDALA 88 (138)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999999
No 207
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=84.70 E-value=2.2 Score=22.03 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=50.0
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEECC----CCCCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 9999999985598633599999981-997899999999993259057315----6545400023721260999999971
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR----GRRGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~-~i~~~~l~kil~~L~~agli~S~r----G~~GGy~Lak~~~~Itl~dI~~aie 83 (144)
.+.++..|. .++..-.+|.... ++|+..|.+-|..|...|+|+-.. .+.=-|+|..... ++..|+.++.
T Consensus 16 ~l~IL~~L~---~g~~RF~eL~~~l~gIS~~~Ls~rLk~Le~~GLv~R~~~~~~p~~veY~LT~~G~--~L~~il~~l~ 89 (107)
T 2hzt_A 16 KXVILXHLT---HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGR--SLEGILDMLX 89 (107)
T ss_dssp HHHHHHHHT---TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGG--GGHHHHHHHH
T ss_pred HHHHHHHHH---CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEECHHHH--HHHHHHHHHH
T ss_conf 999999998---1998699999776467988999999999987845531256899955777785188--9999999999
No 208
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=84.08 E-value=1 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 335999999819978999999999932590573156
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
.+|++++++..++|++-+.+.+..|.+.|+|+-+.+
T Consensus 311 ~~t~~~~~~~~~vs~~Ta~~~l~~L~~~GiL~~~~~ 346 (373)
T 2qc0_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 843999999869899999999999997896798479
No 209
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=83.79 E-value=1.7 Score=22.67 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEC
Q ss_conf 999999985598633599999981997899999999993259057315654540002
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~La 67 (144)
+|+|-.|...+-..+||++||+..++++..++|=|+.+-.-| +||. ||...
T Consensus 20 ~r~L~~l~~~g~~~iSS~~La~~~gi~~~qvRkDls~fG~~G----~~g~--GY~V~ 70 (215)
T 2vt3_A 20 YRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALG----KKGY--GYNVD 70 (215)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTCCC-----------EEHH
T ss_pred HHHHHHHHHCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCC----CCCC--CEEHH
T ss_conf 999999998699489799999996989999999999974249----9888--71689
No 210
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=83.73 E-value=2.5 Score=21.78 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 999985598633599999981-----997899999999993259057315654
Q gi|254780620|r 14 LMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 14 l~~La~~~~~~~s~~eIA~~~-----~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
+-.|...++...|+.+|.+.. .++++.+.+.|..|.++|+|....-.+
T Consensus 24 l~~L~~~~~~h~sa~eI~~~l~~~~~~i~~~TVYR~L~~L~e~gli~~~~~~~ 76 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDG 76 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99998589999999999999997688988899999999999689189999389
No 211
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=83.24 E-value=1.3 Score=23.38 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 9863359999998199789999999999325905731565454000237
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
+..|.+++++|+..+++..-++++|..|.+.|.|.-+-+ +-|.+...
T Consensus 17 ~~~Pp~v~dla~~l~~d~~~~~~~L~~l~~~G~lv~i~~--~~y~~~~~ 63 (121)
T 2pjp_A 17 GDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVK--DRYYRNDR 63 (121)
T ss_dssp SSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEET--TEEEEHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECC--CEEEEHHH
T ss_conf 469998999998979499999999999998995899529--98885899
No 212
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=82.66 E-value=2.7 Score=21.53 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHH
Q ss_conf 8999999999985598633599999981----997899999999993259057315-65454000237212609999999
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEAC----CISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKA 81 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~----~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~a 81 (144)
++|.|. -.|=.+ +++|+.+|.+.. +.+++.+..+|..|.+.|+|...+ |+.-=|+-..+.++..-..+-..
T Consensus 11 ~E~~VM--~~lW~~--~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~Kg~l~r~~~g~~~~y~~~v~~~~~~~~~~~~~ 86 (126)
T 1sd4_A 11 AEWDVM--NIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTF 86 (126)
T ss_dssp HHHHHH--HHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHCC--CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 999999--999868--9977999999853346885606999999999789878873388257763489999999999999
Q ss_pred HC
Q ss_conf 71
Q gi|254780620|r 82 TE 83 (144)
Q Consensus 82 ie 83 (144)
++
T Consensus 87 ~~ 88 (126)
T 1sd4_A 87 LN 88 (126)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 213
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69
Probab=82.24 E-value=2.8 Score=21.43 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEECCCC----CCCCEECCCHHHCCHHHHHHHHC
Q ss_conf 99999999985598633599999981-99789999999999325905731565----45400023721260999999971
Q gi|254780620|r 9 YGIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGR----RGGVRLCRPADQITILDVVKATE 83 (144)
Q Consensus 9 yAi~~l~~La~~~~~~~s~~eIA~~~-~i~~~~l~kil~~L~~agli~S~rG~----~GGy~Lak~~~~Itl~dI~~aie 83 (144)
+.+.++..|.. ++..-.+|.... ++|+..|.+-|..|..+|+|.-..-+ .--|.|... -..|..|+.++.
T Consensus 23 W~l~Il~~L~~---g~~rF~eL~~~l~gIS~~~Ls~rLk~L~~~glv~r~~~~~~p~~veY~LT~~--G~~L~pil~~l~ 97 (112)
T 1z7u_A 23 WKLSLMDELFQ---GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPE--GYALYDALSSLC 97 (112)
T ss_dssp THHHHHHHHHH---SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHC---CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCC--HHHHHHHHHHHH
T ss_conf 79999999972---9987999997762447788999999999889836647799998436665823--879999999999
No 214
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=82.16 E-value=2.8 Score=21.41 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=38.9
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 999855986335999999819978999999999932590573156
Q gi|254780620|r 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 15 ~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
..+....+...|+-+||..+++....+-|-|-+|-+.|+|.-+|-
T Consensus 20 ~V~sL~~~~~iTAi~Is~kL~i~K~~INrQLYkL~~eG~v~mVps 64 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 997387544221999998863008788899999986896544249
No 215
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=81.69 E-value=3 Score=21.31 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 6335999999819978999999999932590573156
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
++.+..+|+...++++.-+..+|..|--.|+|+...|
T Consensus 340 ~~~~~d~l~~~~gl~~~~~~~~L~~LEl~G~v~~~~G 376 (382)
T 3maj_A 340 SPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGG 376 (382)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 9988999999989099999999999997596773499
No 216
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=81.41 E-value=0.24 Score=27.74 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 899999999998559863359999998199789999999999325905731
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~ 57 (144)
.+|.| |.+|-.+ ++.+=++||+.+++|++.+++.++.+++.|+|+-.
T Consensus 21 ~R~~i--l~~lyy~--~~~~q~~IA~~lg~Sr~~V~r~l~~ar~~GiV~i~ 67 (345)
T 2o0m_A 21 ERFQI--LRNIYWM--QPIGRRSLSETMGITERVLRTETDVLKQLNLIEPS 67 (345)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHH--HHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999--9999884--89799999988499775999999999987977996
No 217
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=81.17 E-value=2.6 Score=21.65 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=33.6
Q ss_pred HHHHHHHHC-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Q ss_conf 999999855-9863359999998199789999999999325905
Q gi|254780620|r 12 RVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 (144)
Q Consensus 12 ~~l~~La~~-~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli 54 (144)
.++-|+..| .+..+++++||+..++|+.++.+++.......+.
T Consensus 7 ~~~~~i~~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~~~g~s~~ 50 (107)
T 2k9s_A 7 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVL 50 (107)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHH
T ss_conf 99999997567999799999999892999999999999891989
No 218
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=80.50 E-value=2.1 Score=22.13 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=36.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCE
Q ss_conf 9999855986335999999819978999999999932590573156545400
Q gi|254780620|r 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 (144)
Q Consensus 14 l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~ 65 (144)
++.|+. .+ ++..+||...++|..++.|++...+..|-+.+ |+.||.+
T Consensus 26 Iv~l~~-~G--~s~~~Iar~l~Vs~~~V~kil~r~~etG~i~p--~~~gG~r 72 (128)
T 1pdn_C 26 IVEMAA-DG--IRPCVISRQLRVSHGCVSKILNRYQETGSIRP--GVIGGSK 72 (128)
T ss_dssp HHHHHH-TT--CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSC--CCCSCCC
T ss_pred HHHHHH-CC--CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--CCCCCCC
T ss_conf 999998-69--99999999889689999999999873598777--8889999
No 219
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=79.42 E-value=3.5 Score=20.86 Aligned_cols=65 Identities=14% Similarity=0.328 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHC------CCEEECCCCCCCCEECCCHHHCCHHHHHHH
Q ss_conf 99999999855986335999999819--9789999999999325------905731565454000237212609999999
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKA------GIVETVRGRRGGVRLCRPADQITILDVVKA 81 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~--i~~~~l~kil~~L~~a------gli~S~rG~~GGy~Lak~~~~Itl~dI~~a 81 (144)
.|-++++. .++|++.++|++..+ ++..-+++++..|.+. |+- ....+|||+|.-.|+ ..+.++.
T Consensus 11 ~IEAlLFa---s~~pls~~~la~~~~~~~~~~~i~~~l~~L~~~y~~~~~g~e--l~~~~~g~~l~tk~e---~~~~v~~ 82 (162)
T 1t6s_A 11 SLEALIFS---SEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFR--IHAIAGGYRFLTEPE---FADLVRQ 82 (162)
T ss_dssp HHHHHHHH---CSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEE--EEEETTEEEEEECGG---GHHHHHH
T ss_pred HHHHHHHH---CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEE--EEEECCEEEEEECHH---HHHHHHH
T ss_conf 99999976---389889999999866589999999999999999871798569--999689889997788---8899998
Q ss_pred H
Q ss_conf 7
Q gi|254780620|r 82 T 82 (144)
Q Consensus 82 i 82 (144)
+
T Consensus 83 l 83 (162)
T 1t6s_A 83 L 83 (162)
T ss_dssp H
T ss_pred H
T ss_conf 5
No 220
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=79.18 E-value=2.9 Score=21.36 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=36.5
Q ss_pred HHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 9999985598633599999981-----99789999999999325905731565454
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~-----~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
++-+|..+ + ..|+.+|.+.. .++++-+.+.|..|.+.|+|......+|-
T Consensus 24 Il~~L~~~-~-~~ta~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Glv~~i~~~~~~ 77 (145)
T 3eyy_A 24 VLEAVDTL-E-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGA 77 (145)
T ss_dssp HHHHHHHH-S-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGC
T ss_pred HHHHHHHC-C-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEECCCCC
T ss_conf 99999737-9-989999999999758887658999999999986505776528993
No 221
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Probab=79.02 E-value=3.2 Score=21.11 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=28.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999855986335999999819978999999999
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
+++-|+..|-.++.+.+++|+..++|+.++.+++..
T Consensus 173 ~v~~~I~~~~~~~~~l~~lA~~~~~S~~~l~r~fK~ 208 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELES 208 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999847379999999999979899999999999
No 222
>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} SCOP: a.4.5.69
Probab=78.76 E-value=3.7 Score=20.74 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEECC----CCCCCCEECCCHHHCCHHHHHHHH
Q ss_conf 999999999985598633599999981-997899999999993259057315----654540002372126099999997
Q gi|254780620|r 8 DYGIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR----GRRGGVRLCRPADQITILDVVKAT 82 (144)
Q Consensus 8 ~yAi~~l~~La~~~~~~~s~~eIA~~~-~i~~~~l~kil~~L~~agli~S~r----G~~GGy~Lak~~~~Itl~dI~~ai 82 (144)
...+.++..|. . ++..-.+|.... ++|+..|.+-|..|...|+|.=.. ++.=-|+|... -.+|..++.++
T Consensus 35 kW~l~Il~~L~--~-G~~RF~el~~~l~gis~~vLs~rLk~Le~~glV~r~~~~~~p~~veY~LT~~--G~~L~~il~~l 109 (131)
T 1yyv_A 35 RWGVLILVALR--D-GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL--GEQVSDXVAAL 109 (131)
T ss_dssp HHHHHHHHHGG--G-CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHH--HHHHHHHHHHH
T ss_pred CCHHHHHHHHH--C-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCC--HHHHHHHHHHH
T ss_conf 98999999995--4-9998999997721346588999999999789668656799999557766800--88999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780620|r 83 E 83 (144)
Q Consensus 83 e 83 (144)
.
T Consensus 110 ~ 110 (131)
T 1yyv_A 110 A 110 (131)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 223
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=78.49 E-value=3.8 Score=20.69 Aligned_cols=50 Identities=32% Similarity=0.380 Sum_probs=41.0
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 9999998559863359999998199789999999999325905731565454
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.||-|+..++ +..+.|||+..+++.-..+--|.-|-|.|-|+-.+=+.|-
T Consensus 4 ~IL~f~~~~n--~ckT~EIA~~~~vsaYQARyYL~~LEKEgkIrRsPlRRGa 53 (81)
T 2htj_A 4 EILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGM 53 (81)
T ss_dssp HHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSS
T ss_pred HHHHHHHHCC--CCCHHHHHHHHCHHHHHHHHHHHHHHHHCCEECCCCCCCH
T ss_conf 8999987539--9608999998650899999999999770761048500006
No 224
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1
Probab=78.21 E-value=3.2 Score=21.09 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Q ss_conf 9999999855986335999999819978999999999932--59057
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK--AGIVE 55 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~--agli~ 55 (144)
+.+++.|..+.....|.++|++.++++...+.+.|+.|.. ..++.
T Consensus 594 ~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 640 (759)
T 2hye_C 594 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI 640 (759)
T ss_dssp HHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999984155788279999988790999999999998722445453
No 225
>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=78.10 E-value=0.77 Score=24.77 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCCCCH----HHHHHH----HCCCHHHHHHHHHHHHHCCCEEECCCCCCC------CEECCCHHH
Q ss_conf 99999998559863359----999998----199789999999999325905731565454------000237212
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRI----SQIAEA----CCISELFLFKILQPLVKAGIVETVRGRRGG------VRLCRPADQ 72 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~----~eIA~~----~~i~~~~l~kil~~L~~agli~S~rG~~GG------y~Lak~~~~ 72 (144)
+.+|..|... |..- ++|.+. ..+++.-+..+|.+|.+.|+|++.....++ |.|...-++
T Consensus 44 ~~IL~lL~~~---p~~GYeI~k~i~~~~~~~~~is~gslYp~L~rLe~~GlI~s~~~~~~~gr~Rk~Y~IT~~G~~ 116 (145)
T 1xma_A 44 TIILSLLIEG---DSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIK 116 (145)
T ss_dssp HHHHHHHHHC---CEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHH
T ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHH
T ss_conf 9999998418---988999999999984995437877619999999978966999730578976579998988999
No 226
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=78.06 E-value=3.3 Score=21.02 Aligned_cols=41 Identities=12% Similarity=0.369 Sum_probs=29.8
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999998-559863359999998199789999999999325
Q gi|254780620|r 11 IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKA 51 (144)
Q Consensus 11 i~~l~~La-~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 51 (144)
.++..++. .+.+.+.|.++||+..++|+.|+.+++......
T Consensus 79 ~~v~~~~~~~~~~~~~sl~~la~~~g~S~~~l~R~Fk~~~G~ 120 (133)
T 1u8b_A 79 DKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGM 120 (133)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 999999999704799999999426198999999999999892
No 227
>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=77.62 E-value=4 Score=20.53 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 456899999999998559863359999998199789999999999325905731
Q gi|254780620|r 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 (144)
Q Consensus 4 s~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~ 57 (144)
+...|.-=|+|-.|.. .+.++++.++|+..++|..-+-+||..|.+.|=|...
T Consensus 6 ~i~qd~EQrILq~L~e-~G~~~~a~~La~k~~VPKk~lNrVLY~L~k~gKl~~~ 58 (67)
T 2heo_A 6 STGDNLEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp ---CHHHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHH-CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 4575789999999997-5881039999999788888999999999866653567
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.67 E-value=4.3 Score=20.37 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=49.3
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC----CCE--EECCCCCCCCEECCCHHHCCHHH
Q ss_conf 9999999985598633599999981------99789999999999325----905--73156545400023721260999
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEAC------CISELFLFKILQPLVKA----GIV--ETVRGRRGGVRLCRPADQITILD 77 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~------~i~~~~l~kil~~L~~a----gli--~S~rG~~GGy~Lak~~~~Itl~d 77 (144)
+-..+.||+.+++++++..+|++.. ..+..-|+..+..|++. +.- .......|||.|..++..+-+.+
T Consensus 35 ~r~LLa~L~l~~g~~v~r~~L~~~LWpd~~~~~a~~~Lr~~l~~LRk~L~~~~~~~~~~~~~~~~~y~l~~~~~~vD~~~ 114 (388)
T 2ff4_A 35 QRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGR 114 (388)
T ss_dssp HHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGBHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCEEEHHH
T ss_conf 99999999968998681999998606999833588999999999999751036787259994287154225654653378
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780620|r 78 VVKA 81 (144)
Q Consensus 78 I~~a 81 (144)
....
T Consensus 115 f~~l 118 (388)
T 2ff4_A 115 FVAE 118 (388)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8899
No 229
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=76.47 E-value=4.3 Score=20.35 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 9999999985598--6335999999819978999999999932590573
Q gi|254780620|r 10 GIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 (144)
Q Consensus 10 Ai~~l~~La~~~~--~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S 56 (144)
.+.+.+.|+.+.. ..+|..+|++..+++...+.+.|..|...+++..
T Consensus 199 ~~Qa~ILllFn~~~~~~ls~~ei~~~~~i~~~~l~~~L~~l~~~~~lk~ 247 (382)
T 3dpl_C 199 TFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKR 247 (382)
T ss_dssp HHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSS
T ss_pred HHHHHHHHHHCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCHHHH
T ss_conf 9999999983567776331999998878887999999999871210345
No 230
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, thermus themophilus; HET: NAD; 2.16A {Thermus thermophilus HB8} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=75.25 E-value=4.6 Score=20.15 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=38.6
Q ss_pred CCCCHHH-----HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9764568-----999999999985598633599999981997899999999993259
Q gi|254780620|r 1 MHLTKRT-----DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 (144)
Q Consensus 1 Mkis~~~-----~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~ag 52 (144)
|||++.| .| .++|-+|..++-..+|+.+||+..++++..++|-+..+-..|
T Consensus 1 ~~ip~~ti~RL~lY-~~~L~~l~~~g~~~iss~~La~~~gi~~~~iRkdl~~fg~~G 56 (211)
T 2dt5_A 1 MKVPEAAISRLITY-LRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFGSYG 56 (211)
T ss_dssp -CCCHHHHHHHHHH-HHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHH-HHHHHHHHHCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 98888999999999-999999886676288499999886988888872399998647
No 231
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A
Probab=74.79 E-value=4.8 Score=20.08 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHH-CCCCCCCC
Q ss_conf 633599999981997899999999993259057315654540002372126099999997-18763111
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-EESFFVAE 90 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~ai-e~~~~~~~ 90 (144)
...|+.|+|+..|+|+.-|+ .--+.|+|.+.|.. |||+.= +++++.-...++.. +-...+-+
T Consensus 10 ~~mtIgEvA~~~gvs~~tLR----~YE~~GLl~p~R~~-~gyR~Y-~~~dv~~l~~I~~lr~~g~sl~e 72 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALH----FYESKGLITSIRNS-GNQRRY-KRDVLRYVAIIKIAQRIGIPLAT 72 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHH----HHHHTTSSCCEECT-TSCEEB-CTTHHHHHHHHHHHHHHTCCHHH
T ss_pred CCCCHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCC-CCCEEE-CHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 47079999999884999999----99988799997179-986451-56888999999999991798999
No 232
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=73.73 E-value=0.73 Score=24.89 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CCCCCE------ECCC-HHHCCHHHHH
Q ss_conf 9999999855986335999999819978999999999932590573156----545400------0237-2126099999
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG----RRGGVR------LCRP-ADQITILDVV 79 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG----~~GGy~------Lak~-~~~Itl~dI~ 79 (144)
.+++-.|..+ +..|..+||+..|+|++-++.=+++|.++|+|+.... ..+||. +.-+ ...-.+..+.
T Consensus 16 ~~Il~~L~~d--~R~s~~~IA~~lg~S~~tV~~Ri~rL~~~GiI~~~~~~id~~~~g~~~~~~~~v~~~~~~~~~~~~~~ 93 (163)
T 2gqq_A 16 RNILNELQKD--GRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFN 93 (163)
T ss_dssp HHHHHHHHHC--SSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEEEEEECTTTTTCCCEEEEEEECCCCSTTHHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHH
T ss_conf 9999999985--89999999999890999999999999957960588887530136854899999999622604567777
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 9971876311146
Q gi|254780620|r 80 KATEESFFVAECF 92 (144)
Q Consensus 80 ~aie~~~~~~~C~ 92 (144)
+.+..-..+..|.
T Consensus 94 ~~l~~~~~V~~~~ 106 (163)
T 2gqq_A 94 TAVQKLEEIQECH 106 (163)
T ss_dssp HHHSSCTTEEEEE
T ss_pred HHHCCCCCEEEEE
T ss_conf 7524897779999
No 233
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=73.64 E-value=2.8 Score=21.48 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCE
Q ss_conf 35999999819978999999999932590573156545400
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~ 65 (144)
++..+||+.++++..++.|+++..+..|-+.. ++.||..
T Consensus 42 ~s~r~IArrl~VS~stV~kil~R~retG~~~p--~~~gg~r 80 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYYETGSIRP--GVIGGSK 80 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCC--CCCCCCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--CCCCCCC
T ss_conf 99999999889599999999999986388787--8788989
No 234
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=73.26 E-value=3.1 Score=21.17 Aligned_cols=44 Identities=20% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHHHCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9999985598633599999981----997899999999993259057315
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEAC----CISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~----~i~~~~l~kil~~L~~agli~S~r 58 (144)
+|-.|=.. +++|++||.+.. +.+++-+..+|..|.+.|+|+..+
T Consensus 40 VM~iLW~~--~~~t~~eI~~~l~~~~~~~~sTv~T~L~RL~~KG~l~~~k 87 (99)
T 2k4b_A 40 VMRVIWSL--GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHHH--SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999907--9958999999985013865566999999999889879995
No 235
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A*
Probab=72.68 E-value=5.4 Score=19.77 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCCCCCHH----HHHHHH----CCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999985598633599----999981----9978999999999932590573156545
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRIS----QIAEAC----CISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~----eIA~~~----~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
.+.+|..|+.. +.+-- .|.+.. .+++..+..+|.+|.+.|+|+|.....+
T Consensus 14 ~~~IL~lL~~~---~~~GYei~~~i~~~~~~~~~i~~g~lY~~L~rL~~~GlI~~~~~~~~ 71 (116)
T 3f8b_A 14 NVILLNVLKQG---DNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDES 71 (116)
T ss_dssp HHHHHHHHHHC---CBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC--
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
T ss_conf 99999998718---98899999999998399316897754999999997897689963157
No 236
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=71.81 E-value=5.4 Score=19.79 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99855986335999999819978999999999
Q gi|254780620|r 16 YCAIHNDYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 16 ~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
+....++.+.|..+||+..|+|+..+++|-.+
T Consensus 30 rfGL~~~~~~Tl~eI~~~lgiSreRVRQie~~ 61 (87)
T 1tty_A 30 RYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp HHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 80788999657999998959889999999999
No 237
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=71.63 E-value=5.4 Score=19.75 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=26.6
Q ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHHHH----HHHHH
Q ss_conf 8559863359999998199789999999----99932
Q gi|254780620|r 18 AIHNDYPNRISQIAEACCISELFLFKIL----QPLVK 50 (144)
Q Consensus 18 a~~~~~~~s~~eIA~~~~i~~~~l~kil----~~L~~ 50 (144)
..+++++.|..|||+..|+|...+++|- .+|++
T Consensus 24 Gl~~~~~~tl~eIa~~lgiS~erVrqi~~~al~kLr~ 60 (73)
T 1ku3_A 24 GLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKY 60 (73)
T ss_dssp TTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999998789999999896999999999999999988
No 238
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=71.22 E-value=5.8 Score=19.58 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 689999999999855986335999999819978999999999932590573156
Q gi|254780620|r 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 (144)
Q Consensus 6 ~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG 59 (144)
.++|+|-+=..=-. +-+..|+-+|+..+++....+-|-|-+|.+.|+|.+++-
T Consensus 13 ~~~~eiv~~~i~ni-~~E~~TAieisrqLniEK~~INkqLYkLq~~g~v~mvp~ 65 (82)
T 1oyi_A 13 RSNAEIVCEAIKTI-GIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp CCSHHHHHHHHHHH-SSSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred CCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
T ss_conf 35099999999850-332507999999986759999999999985655541689
No 239
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=70.89 E-value=4 Score=20.55 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC---CCCCEECCCHHHCCHHHHHHHH
Q ss_conf 9999998559863359999998199789999999999325905731565---4540002372126099999997
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR---RGGVRLCRPADQITILDVVKAT 82 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~---~GGy~Lak~~~~Itl~dI~~ai 82 (144)
+++-|+-.|-..+.+.++||+..++|+.++.+++.......+-+-.+-. .--..|.. .+.++.||-...
T Consensus 7 ~~~~~i~~~~~~~~~l~~la~~~~~s~~~~~r~f~~~~g~~~~~~i~~~rl~~a~~~l~~--~~~~i~~ia~~~ 78 (292)
T 1d5y_A 7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL--TARPILDIALQY 78 (292)
T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHH
T ss_conf 999999970689999999999989399999999999989099999999999999999765--675099999981
No 240
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=70.10 E-value=3 Score=21.24 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CC-CCCCEECCCHHHCCHHHHHHHH
Q ss_conf 568999999999985598633599999981997899999999993259057315-65-4540002372126099999997
Q gi|254780620|r 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR-RGGVRLCRPADQITILDVVKAT 82 (144)
Q Consensus 5 ~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~-~GGy~Lak~~~~Itl~dI~~ai 82 (144)
-+..|+|--.+. . ...+.+. +..++|..+..++++.|+.+|||+.+. +. .||..+. +| +||+--+-=..
T Consensus 4 ~kl~Y~ILK~ie--~-~~~~l~~----e~l~Ise~~~~~il~mL~d~GyI~Gv~~~~~~~~v~~~-~~-~IT~~GleYL~ 74 (102)
T 2hgc_A 4 DKLRYAILKEIF--E-GNTPLSE----NDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKL-GP-ELTEKGENYLK 74 (102)
T ss_dssp -CCHHHHHHHHH--H-HCSCCCH----HHHTSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSS-CC-EECHHHHHHHH
T ss_pred HHHHHHHHHHHH--C-CCCCCCH----HHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEE-CC-EECHHHHHHHH
T ss_conf 476999999987--1-6666967----75598999999999999977885307986089845765-67-15678899999
Q ss_pred CC
Q ss_conf 18
Q gi|254780620|r 83 EE 84 (144)
Q Consensus 83 e~ 84 (144)
|.
T Consensus 75 EN 76 (102)
T 2hgc_A 75 EN 76 (102)
T ss_dssp HH
T ss_pred HC
T ss_conf 87
No 241
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583}
Probab=69.39 E-value=3.9 Score=20.58 Aligned_cols=57 Identities=23% Similarity=0.148 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEECCCCCC-C-----CEECCCHHH
Q ss_conf 9999985598633599999981------9978999999999932590573156545-4-----000237212
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEAC------CISELFLFKILQPLVKAGIVETVRGRRG-G-----VRLCRPADQ 72 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~------~i~~~~l~kil~~L~~agli~S~rG~~G-G-----y~Lak~~~~ 72 (144)
+|..|+. ++.+--+|.+.. .+++..+..+|.+|.++|+|+|.....+ | |.|...-++
T Consensus 18 IL~lL~~---~~~~GYei~~~l~~~~~~~~~~gslY~~L~rLe~~G~I~~~~~~~~~g~~rk~Y~iT~~G~~ 86 (116)
T 3hhh_A 18 VLAIIQR---KETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEA 86 (116)
T ss_dssp HHHHHHH---SCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHH
T ss_pred HHHHHHC---CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHH
T ss_conf 9999844---99889999999998489789976659999999988976999864367988469998988999
No 242
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=66.32 E-value=7.4 Score=18.96 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 99999985598633599999981997899999999993259057315654540002372126
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
.++-+|..+++..+|..+||+.+++.+.= |+..|...|++...+ |+|.+..+.+.+
T Consensus 202 ~i~~~L~~~~~~~isi~dis~~T~i~~~D---Ii~tL~~l~~l~~~~---g~~~i~~~~~~i 257 (284)
T 2ozu_A 202 VILECLYHQNDKQISIKKLSKLTGICPQD---ITSTLHHLRMLDFRS---DQFVIIRREKLI 257 (284)
T ss_dssp HHHHHHHHC-----CHHHHHHHHCBCHHH---HHHHHHHTTCC------------CCCHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHH---HHHHHHHCCCEEEEC---CEEEEEECHHHH
T ss_conf 99999986589971699999885998999---999999779689879---908999699999
No 243
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.29 E-value=6.4 Score=19.33 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=25.6
Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHH----HHHHHC
Q ss_conf 559863359999998199789999999----999325
Q gi|254780620|r 19 IHNDYPNRISQIAEACCISELFLFKIL----QPLVKA 51 (144)
Q Consensus 19 ~~~~~~~s~~eIA~~~~i~~~~l~kil----~~L~~a 51 (144)
..++.+.|.++||+..|+|...+++|- ++|++.
T Consensus 20 l~~~~~~tl~eia~~lgvS~erVrqie~~Al~kLr~~ 56 (68)
T 2p7v_B 20 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp TTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999977899999998969999999999999998826
No 244
>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=64.52 E-value=8 Score=18.75 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 9789999999999325905731
Q gi|254780620|r 36 ISELFLFKILQPLVKAGIVETV 57 (144)
Q Consensus 36 i~~~~l~kil~~L~~agli~S~ 57 (144)
++...+..+++.|...|+|++.
T Consensus 350 ~~~~~~~~~l~~Le~~gli~~~ 371 (412)
T 1w5s_A 350 RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 4298999999999977985777
No 245
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=61.27 E-value=4.9 Score=20.02 Aligned_cols=57 Identities=11% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEECCCCCC-C-----CEECCCH
Q ss_conf 999999985598633599999981------9978999999999932590573156545-4-----0002372
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEAC------CISELFLFKILQPLVKAGIVETVRGRRG-G-----VRLCRPA 70 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~------~i~~~~l~kil~~L~~agli~S~rG~~G-G-----y~Lak~~ 70 (144)
+-+|..|+. ++.+.-+|.+.. .+++..+..+|.+|.+.|+|+|.....+ | |+|...-
T Consensus 17 ~~iL~~L~~---~p~~GYei~k~i~~~~~~~~~~g~lY~~L~rLe~~G~I~~~~~~~~~g~~rk~Y~iT~~G 85 (117)
T 3elk_A 17 LYILKELVK---RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAG 85 (117)
T ss_dssp HHHHHHHHH---SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHH
T ss_pred HHHHHHHHH---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHH
T ss_conf 999999861---898899999999998489999764899999999889879997634789886698989889
No 246
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=60.55 E-value=6.8 Score=19.17 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=34.6
Q ss_pred CCCHHHHH----HHHCC--C----HHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 33599999----98199--7----89999999999325905731565454000237
Q gi|254780620|r 24 PNRISQIA----EACCI--S----ELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 24 ~~s~~eIA----~~~~i--~----~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
-.|...|. +.... + ..+|.+-|..++..|-+.=++|+.|-|.|++.
T Consensus 23 GsS~~aI~kyI~~~y~~~~~~~~~~~~L~~aLk~~v~~G~lvq~KG~sG~fkl~kk 78 (78)
T 1uhm_A 23 GSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKK 78 (78)
T ss_dssp CEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESCC
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCC
T ss_conf 97899999999988778887888999999999999877977850599720542889
No 247
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=59.20 E-value=10 Score=18.18 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=26.6
Q ss_pred HHHHH-HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99998-5598633599999981997899999999993
Q gi|254780620|r 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLV 49 (144)
Q Consensus 14 l~~La-~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~ 49 (144)
+.|.. ...+...+-++||+.+|+|++++.+.|+.+.
T Consensus 31 ~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~l~~ 67 (189)
T 3mky_B 31 QRYASRLQNEFAGNISALADAENISRKIITRCINTAK 67 (189)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999999864388899999997979999999998865
No 248
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=59.18 E-value=4.7 Score=20.11 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=23.0
Q ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 85598633599999981997899999999
Q gi|254780620|r 18 AIHNDYPNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 18 a~~~~~~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
.....+.+|.++||+..|+|...++++|+
T Consensus 4 ~~~~~k~vTikdIA~~agVS~aTVSr~Ln 32 (344)
T 3kjx_A 4 TADTKRPLTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp ------CCCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999997699999998959999999978
No 249
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622}
Probab=57.90 E-value=8.1 Score=18.72 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHH
Q ss_conf 63359999998199789999999999325905731565454000237212609999999
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~a 81 (144)
...++.|+|+..|+|+..|+.= -++.|++...|-..+||++= +.++|.....+..
T Consensus 4 ~~y~I~eva~~~gvs~~tlR~y---e~~~gl~~p~r~~~~g~R~Y-~~~~i~~l~~I~~ 58 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAW---ERRYGFPRPLRSEGNNYRVY-SREEVEAVRRVAR 58 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHH---HHHTCCSCCBSSSCSSSCEE-CHHHHHHHHHHHH
T ss_pred CEEEHHHHHHHHCCCHHHHHHH---HHHCCCCCCEEECCCCCEEC-CHHHHHHHHHHHH
T ss_conf 5355999999988599999999---98269998625689973667-8999999999999
No 250
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=57.03 E-value=7.9 Score=18.80 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 3599999981997899999999
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~ 46 (144)
++.++||+..|+|...++++|+
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9799999998859999999985
No 251
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=56.76 E-value=8.6 Score=18.56 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHCCC-CCCCHHHHH----HHHC----CC--HHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 99999999985598-633599999----9819----97--899999999993259057315654540002372
Q gi|254780620|r 9 YGIRVLMYCAIHND-YPNRISQIA----EACC----IS--ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 9 yAi~~l~~La~~~~-~~~s~~eIA----~~~~----i~--~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
|--.++--|..-.+ .-.|...|. .... .. ..+|.+-|..++..|.+.=++|+.|-|.|+...
T Consensus 10 Y~~MI~eAI~al~er~GsS~~AI~KyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KG~sGsfkl~~~~ 82 (93)
T 1ust_A 10 YRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKKK 82 (93)
T ss_dssp HHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSCC
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCC
T ss_conf 9999999999838889978999999999887666557889999999999998659778505898765518888
No 252
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=56.67 E-value=11 Score=17.92 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCCCCCC--EECCCHHHCCH
Q ss_conf 85598633599999981997899999999993259057-315654540--00237212609
Q gi|254780620|r 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGV--RLCRPADQITI 75 (144)
Q Consensus 18 a~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~-S~rG~~GGy--~Lak~~~~Itl 75 (144)
....|+|++..++|+..+.|...++++|..+. -++ --.|+-.|| .+.-.+-.+++
T Consensus 30 ~la~G~pv~~~~LA~~~~~~~e~v~~~L~~~~---~~e~D~~G~IvgyglS~~PT~Hrv~v 87 (220)
T 3f2g_A 30 ELAKGRPVSRTTLAGILDWPAERVAAVLEQAT---STEYDKDGNIIGYGLTLRETSYVFEI 87 (220)
T ss_dssp HHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT---TCEECTTSCEEESSEESSCCSEEEEC
T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCC---CCEECCCCCEEEEECCCCCCCEEEEE
T ss_conf 99779999999999882998999999998679---84688998789631366866408998
No 253
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=55.33 E-value=8.5 Score=18.59 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH---------------HHHHHCCCEE
Q ss_conf 863359999998199789999999---------------9993259057
Q gi|254780620|r 22 DYPNRISQIAEACCISELFLFKIL---------------QPLVKAGIVE 55 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l~kil---------------~~L~~agli~ 55 (144)
.+.+|.++||+..|+|...++++| +...+-||+.
T Consensus 7 ~~~~Tl~diA~~agVS~~TVsraLn~~~~vs~~tr~rV~~~a~~lgY~~ 55 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLG 55 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9986399999998879999999968989999999999999999839999
No 254
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=54.32 E-value=12 Score=17.79 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Q ss_conf 9863359999998199789999999999325905
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli 54 (144)
.+...++++||+..++|+.++.+++..-....+.
T Consensus 16 ~~~~l~l~~lA~~~~~s~~~l~r~fk~~~g~s~~ 49 (103)
T 3lsg_A 16 TDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQ 49 (103)
T ss_dssp TCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHH
T ss_conf 7999899999999892999999999998890999
No 255
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=53.24 E-value=13 Score=17.59 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 64568999999999985598633599999981----997899999999993259057315
Q gi|254780620|r 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC----CISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 3 is~~~~yAi~~l~~La~~~~~~~s~~eIA~~~----~i~~~~l~kil~~L~~agli~S~r 58 (144)
+.+-++-=..+|-.|=.+ ++.++.+|.+.. +.+++-+..+|..|.+.|+|+..+
T Consensus 4 ~~~Lt~~E~~VM~~lW~~--~~~t~~ei~~~l~~~~~~~~sTv~T~L~RL~~Kg~l~~~~ 61 (82)
T 1p6r_A 4 IPQISDAELEVMKVIWKH--SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp CCCCCHHHHHHHHHHHTS--SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 899999999999999817--9978999999860236972857999999999889868872
No 256
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=53.15 E-value=5.6 Score=19.67 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 3599999981997899999999993259057
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLVKAGIVE 55 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~~agli~ 55 (144)
+|++++|+..++|+ .++++.|+.||+-+
T Consensus 3 ~TVk~lA~~v~~~v---d~LL~Ql~~AGi~k 30 (49)
T 1nd9_A 3 VTIKTLAAERQTSV---ERLVQQFADAGIRK 30 (49)
T ss_dssp ECTTHHHHHHSSSH---HHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHCCCH---HHHHHHHHHCCCCC
T ss_conf 33999999989499---99999999918999
No 257
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=51.75 E-value=9.5 Score=18.32 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 63359999998199--------------7899999999993259057315654540002372
Q gi|254780620|r 23 YPNRISQIAEACCI--------------SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 23 ~~~s~~eIA~~~~i--------------~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
+++.+..++...|- |...++++||.|-++|+|+-. ++||-.|+...
T Consensus 66 gpvGV~~L~~~YGg~k~rG~~P~~~~~asg~iiR~~LQqLE~~g~v~k~--~~~GR~lT~~G 125 (150)
T 2v7f_A 66 GPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV--PGKGRVITPKG 125 (150)
T ss_dssp CSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE--TTTEEEECHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEC--CCCCCEECHHH
T ss_conf 8974879999978787899999876666618999999999868887777--99983789888
No 258
>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=51.68 E-value=7.5 Score=18.92 Aligned_cols=31 Identities=42% Similarity=0.517 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 789999999999325905731565454000237
Q gi|254780620|r 37 SELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 37 ~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
|...++++||.|-++|+|+-. ++||-.|+..
T Consensus 94 Sg~iiR~~LQqLE~~g~v~k~--~~~GR~iT~~ 124 (141)
T 3jyv_T 94 SGSINRKVLQALEKIGIVEIS--PKGGRRISEN 124 (141)
T ss_dssp HHHHHHHHHHHHHTTTSCCBC--TTSSBCCCHH
T ss_pred CCHHHHHHHHHHHHCCCEEEC--CCCCCEECHH
T ss_conf 518899999999878887765--9998377987
No 259
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=50.91 E-value=13 Score=17.44 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 999985598633599999981997899999999993259057315654540
Q gi|254780620|r 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 (144)
Q Consensus 14 l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy 64 (144)
+..++.. =..++.+.||+..++|...++.++..|...|-+...==...|+
T Consensus 21 i~~is~~-Y~~Isl~~lA~~l~i~~~~ve~~l~~mI~~~~i~akIDq~~g~ 70 (84)
T 1ufm_A 21 LLSASKL-YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70 (84)
T ss_dssp HHHHHHS-CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTE
T ss_pred HHHHHHH-CCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf 9999985-0554599999996969999999999998679279999089998
No 260
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=49.98 E-value=13 Score=17.60 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 999999855986--33599999981997899999999993259057
Q gi|254780620|r 12 RVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVE 55 (144)
Q Consensus 12 ~~l~~La~~~~~--~~s~~eIA~~~~i~~~~l~kil~~L~~agli~ 55 (144)
++.-|+-.|++. ..|+.+||+..++|++-+-|..++|-=.||-+
T Consensus 25 ~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~Rf~kklGf~gf~e 70 (111)
T 2o3f_A 25 KLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp HHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
T ss_conf 9999999592476437899999897989879999999927798999
No 261
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=48.94 E-value=15 Score=17.18 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 9998199789999999999325905731565454000237
Q gi|254780620|r 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 30 IA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
.....+++...+.+.+..|.+.|+|... +|.|++..|
T Consensus 306 ~~~~~~~~~~~~~~~L~~L~~~~li~~~---~~~Y~~~~p 342 (350)
T 2qen_A 306 AVKGTKIPEPRLYALLENLKKMNWIVEE---DNTYKIADP 342 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSEEEE---TTEEEESSH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCEEEE---CCEEEECCH
T ss_conf 8512799999999999999978997998---999999188
No 262
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=48.83 E-value=14 Score=17.39 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCCHHH----HHHHHCC----C---HHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC
Q ss_conf 335999----9998199----7---899999999993259057315654540002372126
Q gi|254780620|r 24 PNRISQ----IAEACCI----S---ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 (144)
Q Consensus 24 ~~s~~e----IA~~~~i----~---~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I 73 (144)
-.|... |.+...+ + ...|.+-|..++..|.+.=.+|+.|-|.|++...+.
T Consensus 26 GsS~~aI~KYI~~~y~~~~~~~~~~~~~l~~aLkkgv~~G~L~q~KG~sG~fkl~~k~~~~ 86 (88)
T 1uss_A 26 GSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKKKVKL 86 (88)
T ss_dssp SBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCSCCCC
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCCCCC
T ss_conf 9789999999999877776552779999999999998769778334898656526666667
No 263
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=48.37 E-value=7.2 Score=19.04 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=25.9
Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHH----HHHHHCC
Q ss_conf 559863359999998199789999999----9993259
Q gi|254780620|r 19 IHNDYPNRISQIAEACCISELFLFKIL----QPLVKAG 52 (144)
Q Consensus 19 ~~~~~~~s~~eIA~~~~i~~~~l~kil----~~L~~ag 52 (144)
..++.+.|.++||+..|+|+..+++|- .+|++..
T Consensus 33 l~~~~~~tl~eIa~~lgvSrerVRQie~~Al~kLr~~~ 70 (81)
T 1tlh_B 33 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 70 (81)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH
T ss_conf 89998557999999989799999999999999985706
No 264
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=47.33 E-value=16 Score=17.03 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=26.4
Q ss_pred HCCCC--CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 55986--335999999819978999999999932
Q gi|254780620|r 19 IHNDY--PNRISQIAEACCISELFLFKILQPLVK 50 (144)
Q Consensus 19 ~~~~~--~~s~~eIA~~~~i~~~~l~kil~~L~~ 50 (144)
..++| ..+..+||+..+++...+++|+..|.+
T Consensus 41 LD~~GyL~~~~eeia~~l~~~~~~ve~vL~~lQ~ 74 (76)
T 2k9l_A 41 LNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 74 (76)
T ss_dssp CTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 5978881889999999979099999999999860
No 265
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=45.19 E-value=17 Score=16.83 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 8999999999985-59863359999998199789999999999325
Q gi|254780620|r 7 TDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKA 51 (144)
Q Consensus 7 ~~yAi~~l~~La~-~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 51 (144)
.+.-+-+.+|+|- +.+-|.|..|||+..+++...+.+....+.+.
T Consensus 51 ~~~~~aAciy~aCR~~~~prtl~eia~~~~~~~k~i~~~~k~i~~~ 96 (200)
T 1ais_B 51 IESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARN 96 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9989999999999885899679999999840299999999999999
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=44.04 E-value=14 Score=17.33 Aligned_cols=53 Identities=15% Similarity=0.023 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCC--CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Q ss_conf 764568999999999985598--633-59999998199789999999999325905
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHND--YPN-RISQIAEACCISELFLFKILQPLVKAGIV 54 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~~--~~~-s~~eIA~~~~i~~~~l~kil~~L~~agli 54 (144)
+.++-++|-=.+|-+|..++. +.- -..+|.+...+|+++|-||-..|++-|=.
T Consensus 86 ~~n~~se~vd~ALd~lv~q~kkdqLe~i~~~l~kn~ei~~~illkia~A~~kiG~~ 141 (172)
T 1wy6_A 86 INNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDE 141 (172)
T ss_dssp HTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCH
T ss_pred HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
T ss_conf 70730899999999999826088999999998764899869999999999885233
No 267
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=43.85 E-value=3.9 Score=20.58 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 85598633599999981997899999999
Q gi|254780620|r 18 AIHNDYPNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 18 a~~~~~~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
+..+....|.++||+..|+|...|+++|+
T Consensus 2 ~~~~k~r~Ti~dIA~~aGVS~~TVSr~Ln 30 (348)
T 3bil_A 2 SLTEKFRPTLKDVARQAGVSIATASRALA 30 (348)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 98789997399999998869999999968
No 268
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=43.72 E-value=14 Score=17.35 Aligned_cols=49 Identities=8% Similarity=0.079 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHCCCCCC
Q ss_conf 8633599999981997899999999993259057315654540002372126099999997187631
Q gi|254780620|r 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie~~~~~ 88 (144)
...+|-.++|+..|++++++.++.+ |.. ..|.--+|..+..+++-++.+
T Consensus 29 ~~glTQ~elA~~~gvs~~~is~iE~------------G~~------~~~s~~~L~~ia~aLg~~v~i 77 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMR------------GKI------DLFSLESLIDMITSIGLKVEI 77 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT------------TCG------GGCCHHHHHHHHHHTTCCCCC
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHC------------CCC------CCCCHHHHHHHHHHHCCCEEE
T ss_conf 9599999999998778999999987------------999------998999999999992996388
No 269
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=43.71 E-value=18 Score=16.69 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=38.6
Q ss_pred HHHHHHHHHHH-CCCCCCCHH----HHHHHHCCCH---HHHHHHHHHHHHCCCEEECC--CCCCCCEECCCH
Q ss_conf 99999999985-598633599----9999819978---99999999993259057315--654540002372
Q gi|254780620|r 9 YGIRVLMYCAI-HNDYPNRIS----QIAEACCISE---LFLFKILQPLVKAGIVETVR--GRRGGVRLCRPA 70 (144)
Q Consensus 9 yAi~~l~~La~-~~~~~~s~~----eIA~~~~i~~---~~l~kil~~L~~agli~S~r--G~~GGy~Lak~~ 70 (144)
|.-.++--|.. .+..-.|.. -|++....+. .++.+-|..++..|.+.=++ |+.|-|.|++..
T Consensus 10 y~~MI~eAI~~l~er~GsS~~AIkkyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 10 YSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp HHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEECCCCC
T ss_conf 899999999982888886899999999987888411789999999999875967840466887455778887
No 270
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=43.27 E-value=17 Score=16.80 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=22.8
Q ss_pred HHHHHHHCCC---HHHHHHHHHHHHHCCCEEEC---CCCCCCC---EECCCHHHC
Q ss_conf 9999981997---89999999999325905731---5654540---002372126
Q gi|254780620|r 28 SQIAEACCIS---ELFLFKILQPLVKAGIVETV---RGRRGGV---RLCRPADQI 73 (144)
Q Consensus 28 ~eIA~~~~i~---~~~l~kil~~L~~agli~S~---rG~~GGy---~Lak~~~~I 73 (144)
..+++..+.+ ..-+..+++.|...|+|++. +|+.|++ .|..|+++|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~~~~~~~~l~~d~~~v 361 (384)
T 2qby_B 307 TDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDKEKV 361 (384)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSSHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCHHHH
T ss_conf 9999980998777999999999999769907886238888865899706999999
No 271
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=42.78 E-value=19 Score=16.61 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=28.2
Q ss_pred HHHCCHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
Q ss_conf 212609999999718763111468----8778887656644799999999999999841799999915
Q gi|254780620|r 70 ADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 (144)
Q Consensus 70 ~~~Itl~dI~~aie~~~~~~~C~~----~~~~~C~~~~~c~~~~~~~~~~~~~~~~L~~~TL~dl~~~ 133 (144)
..-||--||.++++--..+..+.. +................+.++.+.+. .-..+|...|.+.
T Consensus 111 ~~lVS~~di~~av~~l~~lg~~~~l~~~~sg~~~~~s~~~~~d~~~~~~l~~v~-~~~~~S~s~Lqr~ 177 (218)
T 3cuq_B 111 MELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVS-EKGSLTSEEFAKL 177 (218)
T ss_dssp SSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHH-HTSCBCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHH
T ss_conf 886799999999999996399827763035543446787205889999999998-7799489999999
No 272
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=42.43 E-value=17 Score=16.78 Aligned_cols=47 Identities=6% Similarity=-0.080 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHCCCC
Q ss_conf 86335999999819978999999999932590573156545400023721260999999971876
Q gi|254780620|r 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie~~~ 86 (144)
...+|.+++|+..|+|+.+|.||= +|.. ..|.--+|..|-++++-++
T Consensus 21 ~~gltl~eLA~~~GvS~~~lS~iE------------~G~~------~~psl~~L~kia~aL~v~~ 67 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWE------------NGEG------GELTLTQLGRIAHVLGTSI 67 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH------------TTTC------TTCBHHHHHHHHHHTTSCT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHH------------CCCC------CCCCHHHHHHHHHHHCCCH
T ss_conf 859999999988797999999867------------3898------8998999999999979799
No 273
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=40.93 E-value=17 Score=16.83 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 86335999999819978999999999
Q gi|254780620|r 22 DYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
..-.|.+++|+.++|+..|+.+|=..
T Consensus 18 ~~glS~~elA~~l~Is~~~l~~iE~g 43 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 96999999999985689999998878
No 274
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=40.07 E-value=17 Score=16.85 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=13.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 359999998199789999999
Q gi|254780620|r 25 NRISQIAEACCISELFLFKIL 45 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil 45 (144)
+|.++||+..|+|...+.++|
T Consensus 3 vTi~dIA~~aGVS~~TVSr~L 23 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVV 23 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHH
T ss_conf 679999999897999999997
No 275
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=39.66 E-value=5 Score=19.96 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 986335999999819978999999999
Q gi|254780620|r 21 NDYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
+.+++|.++||+..|+|.+.|+++|+.
T Consensus 9 ~~k~vTikdIA~~aGVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 9 GHRPVTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ---------------------------
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999976999999988599999999689
No 276
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=38.23 E-value=19 Score=16.53 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCC----CEECCCHHHCCH
Q ss_conf 3599999981997899999999993259057315-65454----000237212609
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGG----VRLCRPADQITI 75 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GG----y~Lak~~~~Itl 75 (144)
.|++|||.--++| .....|-...++.|+..-.| |++|| |.++-=|.++-.
T Consensus 5 ~tA~ELagLpGlP-~t~~gv~~~Akre~W~~r~r~G~~gG~~~EYhissLP~~~q~ 59 (76)
T 1tns_A 5 VSPKELANLPGLP-KTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKA 59 (76)
T ss_dssp ECHHHHTTCSSSC-SSHHHHHHHHHTTCCCCCCCTTSSSSCCCCEETTTSCHHHHH
T ss_pred CCHHHHHCCCCCC-CCHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEHHHCCHHHHH
T ss_conf 6699992589999-888999999996782231334657885179746649999999
No 277
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=38.01 E-value=22 Score=16.16 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 9999999855986--33599999981997899999999993259057
Q gi|254780620|r 11 IRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVE 55 (144)
Q Consensus 11 i~~l~~La~~~~~--~~s~~eIA~~~~i~~~~l~kil~~L~~agli~ 55 (144)
-++.-|+-.|++. ..|+.+||+..++|++-+-|..++|-=.||-+
T Consensus 20 ~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~Rf~kklGf~gf~d 66 (107)
T 3iwf_A 20 KKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNE 66 (107)
T ss_dssp HHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
T ss_conf 99999999599999776599999897989989999999958898999
No 278
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=37.11 E-value=23 Score=16.08 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=6.3
Q ss_pred HHHHCCHHHHHH
Q ss_conf 984179999991
Q gi|254780620|r 121 VLTQYSIECLVR 132 (144)
Q Consensus 121 ~L~~~TL~dl~~ 132 (144)
++...|..++.+
T Consensus 121 ~~~g~s~~EIA~ 132 (164)
T 3mzy_A 121 LIRGYSYREIAT 132 (164)
T ss_dssp HTTTCCHHHHHH
T ss_pred HHHCCCHHHHHH
T ss_conf 562389999999
No 279
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=36.83 E-value=23 Score=16.05 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHH-HHHHHHHHHHCCCEEECC
Q ss_conf 99999985598633599999981997899-999999993259057315
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELF-LFKILQPLVKAGIVETVR 58 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~-l~kil~~L~~agli~S~r 58 (144)
+++-||-.+ ++.++-.||+..|++..- |-++|-.|.+.+++....
T Consensus 14 kI~~fL~~~--gps~AL~IAKnlGl~takdVN~~Ly~lekqhll~~d~ 59 (72)
T 3eyi_A 14 DIYRFLKDN--GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDE 59 (72)
T ss_dssp HHHHHHHHH--CSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHC--CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999966--9825889998858231777659999999832777668
No 280
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=36.55 E-value=23 Score=16.02 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCEECCCHHHCCHHHHHHH
Q ss_conf 64568999999999985598633599999981997899999999993259057315-65454000237212609999999
Q gi|254780620|r 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKA 81 (144)
Q Consensus 3 is~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~GGy~Lak~~~~Itl~dI~~a 81 (144)
+|.++---+++++.|-. ++-.|++-|+..++++....+-++..|.|.|-|.-+. |+.-=+.|..+...=-+..|++-
T Consensus 5 ~~~~v~~r~~~il~lla--dgCktts~I~~~Lg~sh~~A~~~ly~Lakeg~V~~v~ig~~aiwCl~~d~y~nlV~~i~Re 82 (165)
T 2vxz_A 5 HSREVLVRLRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMDQYRQLVDGMIRE 82 (165)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHH
T ss_conf 22999999999999997--5450899999982650899999999998668169998634479995637999999999999
Q ss_pred HCC
Q ss_conf 718
Q gi|254780620|r 82 TEE 84 (144)
Q Consensus 82 ie~ 84 (144)
++.
T Consensus 83 i~R 85 (165)
T 2vxz_A 83 VER 85 (165)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 281
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=35.97 E-value=24 Score=15.97 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=9.5
Q ss_pred HHHHHHHHHCCHHHHHHC
Q ss_conf 999999841799999915
Q gi|254780620|r 116 NAFFDVLTQYSIECLVRN 133 (144)
Q Consensus 116 ~~~~~~L~~~TL~dl~~~ 133 (144)
..+.+.++..++.+|.+.
T Consensus 84 ~~I~~ef~G~n~~eLArk 101 (129)
T 1rr7_A 84 LRIWNDFNGRNVSELTTR 101 (129)
T ss_dssp HHHHHHCCSSCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHH
T ss_conf 999999089989999999
No 282
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=35.69 E-value=24 Score=15.94 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCC-HHHHHHHHCCCCCCCC
Q ss_conf 335999999819978999999999932590573156545400023721260-9999999718763111
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT-ILDVVKATEESFFVAE 90 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~It-l~dI~~aie~~~~~~~ 90 (144)
..|+.++|+..|+|+.-|+= --+-|+|...+=..+||++=- .+++. |..|...-+-.+++.+
T Consensus 4 ~Y~Igeva~~~gvs~~TLRy----Ye~~GLl~P~~r~~~gyR~Yt-~~dl~~l~~I~~lr~~G~sl~e 66 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRY----YDKINLLKPSDYTEGGHRLYT-KDDLYVLQQIQSFKHLGFSLGE 66 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHH----HHHTTSSCCSEECTTSCEEBC-HHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH----HHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCHHH
T ss_conf 77399999998959889999----998799897700899972268-9999999999999996999999
No 283
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=34.63 E-value=25 Score=15.84 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 633599999981997899999999993259057315654
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
+..|+.-|-.+.+|-++...+|+-.|-..|+|....|.+
T Consensus 23 ~kaS~S~lQR~l~IGYnRAariid~LE~~GiVsp~~g~~ 61 (73)
T 2ve8_A 23 RRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNG 61 (73)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCTTS
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 874589999997305079999999999878868877898
No 284
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=34.46 E-value=25 Score=15.82 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCH-HHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 89999999999855986335999999819978-9999999999325905731565454000237
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISE-LFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~-~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
++-.-+++-||-.. ++.++-.||+.+|++. .-|-++|-.|.+.|.|.-..+.-==|.|+..
T Consensus 10 ~~~~ekI~~~L~~~--~~stAl~iAk~LGl~kakeVN~~LY~L~k~g~v~k~~~tPP~W~l~~~ 71 (79)
T 1xmk_A 10 AEIKEKICDYLFNV--SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDK 71 (79)
T ss_dssp HHHHHHHHHHHHHT--CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHH
T ss_pred HHHHHHHHHHHHHC--CCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEHHH
T ss_conf 78999999999966--995399999992997267774999999976781227998996341073
No 285
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.06 E-value=9.7 Score=18.28 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=33.1
Q ss_pred HHHHHHHCC-C----HHHHHHHHHHHHHCCCEEECC--CCCCCCEECCCHHH
Q ss_conf 999998199-7----899999999993259057315--65454000237212
Q gi|254780620|r 28 SQIAEACCI-S----ELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPADQ 72 (144)
Q Consensus 28 ~eIA~~~~i-~----~~~l~kil~~L~~agli~S~r--G~~GGy~Lak~~~~ 72 (144)
+-|.+.+.. + ..+|.+-|+.++..|.+.=++ |+.|=|+|++.+++
T Consensus 36 kyI~~~y~~~~~~~~~~~l~~aLkk~v~~G~l~q~kg~GasGsfkl~~~~kk 87 (88)
T 2rqp_A 36 KYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQKSRK 87 (88)
T ss_dssp HHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTTTCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCCC
T ss_conf 9999986867788899999999999987596786146787510564888788
No 286
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=33.85 E-value=26 Score=15.76 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHH
Q ss_conf 8999999999985598633599999981-------997899999999993259057315654540002372126099999
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEAC-------CISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~-------~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~ 79 (144)
.....|+++.+..+.| .|..|+|+.+ ++|...+.+.+..-+. |.......+.|| +|..++-.++.
T Consensus 7 ~~~~~R~~i~~~~~~g--~~~~e~~~~l~~~~~~~~is~~TV~rw~~~~~~-g~~~l~~~~r~g-----rp~~~~~~~~~ 78 (345)
T 3hot_A 7 NKEQTRTVLIFCFHLK--KTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-GDFDVDDKEHGK-----PPKRYEDAELQ 78 (345)
T ss_dssp CHHHHHHHHHHHHHTT--CCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-CCCCCSCCCCCC-----CCCSSCHHHHH
T ss_pred CCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCC-----CCCCCCHHHHH
T ss_conf 3188999999999859--999999999998746788878899999999965-786667699998-----89857439999
Q ss_pred HHHCC
Q ss_conf 99718
Q gi|254780620|r 80 KATEE 84 (144)
Q Consensus 80 ~aie~ 84 (144)
+.++.
T Consensus 79 ~~i~~ 83 (345)
T 3hot_A 79 ALLDE 83 (345)
T ss_dssp HHHHH
T ss_pred HHHHC
T ss_conf 98861
No 287
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=33.40 E-value=7.2 Score=19.02 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=6.6
Q ss_pred HHHHHHCCCHHHHHHHHHH
Q ss_conf 9999819978999999999
Q gi|254780620|r 29 QIAEACCISELFLFKILQP 47 (144)
Q Consensus 29 eIA~~~~i~~~~l~kil~~ 47 (144)
+||.-.|+++..+.+|+++
T Consensus 173 ~iA~~lG~sr~tlSRi~k~ 191 (194)
T 3dn7_A 173 LLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------
T ss_pred HHHHHHCCCHHHHHHHHHH
T ss_conf 9999979989999999998
No 288
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.75 E-value=27 Score=15.65 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 33599999981997899999999
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
-+|-.++|+..|+|+.++.++.+
T Consensus 21 gltq~~lA~~lgvs~~~is~~e~ 43 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHHC
T ss_conf 99999999984963899869872
No 289
>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: a.4.5.61
Probab=32.51 E-value=24 Score=15.91 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9978999999999932590573156545
Q gi|254780620|r 35 CISELFLFKILQPLVKAGIVETVRGRRG 62 (144)
Q Consensus 35 ~i~~~~l~kil~~L~~agli~S~rG~~G 62 (144)
.+++..+..+|.+|.+.|+|+|..-..+
T Consensus 46 ~~~~gtiY~~L~rLe~~GlI~~~~~~~~ 73 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTV 73 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 5897607999999998897699973168
No 290
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=32.28 E-value=12 Score=17.74 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHCCCEEECCC--CCCCCEECC
Q ss_conf 78999999999932590573156--545400023
Q gi|254780620|r 37 SELFLFKILQPLVKAGIVETVRG--RRGGVRLCR 68 (144)
Q Consensus 37 ~~~~l~kil~~L~~agli~S~rG--~~GGy~Lak 68 (144)
...++.+-|..++..|.+.=++| ..|-|.|++
T Consensus 42 ~~~~lk~aLk~~v~~G~l~q~kg~GasGsfkl~k 75 (75)
T 1ghc_A 42 NNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLSK 75 (75)
T ss_dssp SHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSCC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCEEEECC
T ss_conf 8999999999998769779503678740156286
No 291
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=31.32 E-value=28 Score=15.51 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 899999999998559863359999998--------199789999999999325905731565454
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEA--------CCISELFLFKILQPLVKAGIVETVRGRRGG 63 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~--------~~i~~~~l~kil~~L~~agli~S~rG~~GG 63 (144)
.+|+|-.++ +.. |.+-=+|.+. .++++..+...|.+|.+.|+|++..-..+|
T Consensus 3 l~~~iLglL--~~~---p~~GYel~k~l~~~~~~~~~~s~g~IY~~L~kLe~~GlI~~~~~~~~~ 62 (179)
T 1yg2_A 3 LPHVILTVL--STR---DATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEG 62 (179)
T ss_dssp HHHHHHHHH--HHC---CBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC----
T ss_pred HHHHHHHHH--HCC---CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 899999998--728---989999999999984883078978289999999977976898512689
No 292
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.16 E-value=29 Score=15.50 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHCCCCCCCC
Q ss_conf 3359999998199789999999999325905731565454000237212609999999718763111
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAE 90 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie~~~~~~~ 90 (144)
..|+.++|+..|+|+..|+ .--+.|+|...+-..+||+.=.+.+--.|..|...-+-...+-+
T Consensus 2 ~msI~e~a~~~gvs~~tLR----yYe~~GLl~p~~r~~~gyR~Y~~~dl~~L~~I~~lr~~G~sL~e 64 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIR----YYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEA 64 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHH----HHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CEEHHHHHHHHCCCHHHHH----HHHHCCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 5049999999894989999----99987999725526899544109899999999999986998999
No 293
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=31.09 E-value=29 Score=15.49 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999855986335999999819978999999999
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
|.++.|....+ .|.+|||+..|+|+.-+...++.
T Consensus 31 R~v~~l~~~e~--ls~~EIA~~lgiS~~aV~~~l~R 64 (113)
T 1xsv_A 31 RNYLELFYLED--YSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp HHHHHHHHTSC--CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999919--99999999989699999999999
No 294
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=31.02 E-value=29 Score=15.49 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 633599999981997899999999
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
.-.|..++|+..|+++.++.++..
T Consensus 30 ~gisq~eLA~~lGvs~~~is~~e~ 53 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 799899999997837899999975
No 295
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=30.62 E-value=29 Score=15.44 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8633599999981997899999999
Q gi|254780620|r 22 DYPNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
....|.+++|+.++++..|++.+=.
T Consensus 14 ~~glSi~eva~~l~I~~~~l~aiE~ 38 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9699999999997514999999984
No 296
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=30.40 E-value=29 Score=15.42 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=7.9
Q ss_pred HHCCHHHHHHHHC
Q ss_conf 1260999999971
Q gi|254780620|r 71 DQITILDVVKATE 83 (144)
Q Consensus 71 ~~Itl~dI~~aie 83 (144)
+.||--||.+|++
T Consensus 113 ~~IS~dDi~~Ai~ 125 (234)
T 3cuq_A 113 QDVSQDDLIRAIK 125 (234)
T ss_dssp SSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 7569999999999
No 297
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.95 E-value=30 Score=15.37 Aligned_cols=32 Identities=19% Similarity=-0.043 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999998559863359999998199789999999999
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L 48 (144)
+|..++. | .|.+|||+..++|+..++.-++.+
T Consensus 6 vl~ll~~--G--~s~~eIA~~l~iS~~TV~~h~~~i 37 (61)
T 2jpc_A 6 VLKLIDE--G--YTNHGISEKLHISIKTVETHRMNM 37 (61)
T ss_dssp HHHHHHT--S--CCSHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHC--C--CCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999982--7--999999989698999999999999
No 298
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=29.45 E-value=31 Score=15.32 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHCCC
Q ss_conf 633599999981997899999999993259057315654540002372126099999997187
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie~~ 85 (144)
.-.|.+++|+..+++..++.+|- +|.. .|.--+|..|-++++-+
T Consensus 23 ~gls~~~lA~~~gvs~~~ls~iE------------~g~~-------~ps~~~l~~ia~~l~v~ 66 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIE------------RGES-------SPTIATLWKIASGLEAS 66 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHH------------TTCS-------CCCHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH------------CCCC-------CCCHHHHHHHHHHHCCC
T ss_conf 19999999999893999999998------------6998-------77634799999885568
No 299
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=28.71 E-value=31 Score=15.24 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 633599999981997899999999
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
.-+|..++|+..|+|+..+.++++
T Consensus 23 ~gisq~~LA~~lgvs~~~is~i~~ 46 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 699999999996989999999993
No 300
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=28.63 E-value=32 Score=15.24 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHCCCCCC
Q ss_conf 33599999981997899999999993259057315654540002372126099999997187631
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie~~~~~ 88 (144)
..++.|+|+..|+|+..|+ ---+.|++...+=..|||+.=.+.+--.|..|...-+-...+
T Consensus 2 ~ytI~e~A~~~gvs~~tlR----~Ye~~GLl~p~~r~~~gyR~Y~~~~v~~l~~I~~lr~~G~sl 62 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLH----HYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRL 62 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHH----HHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCH
T ss_pred CEEHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCH
T ss_conf 5109999999896999999----999858948773189998306699999999999999969999
No 301
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.60 E-value=32 Score=15.23 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 63359999998199789999999999325
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKA 51 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~a 51 (144)
...|..++|+..+++...+.+.+..+...
T Consensus 114 ~~pt~~e~a~~l~~~~~~~~~~l~~~~~~ 142 (239)
T 1rp3_A 114 REPTDEEVAKELGISTEELFKTLDKINFS 142 (239)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 79999999541499899999998720343
No 302
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=28.52 E-value=32 Score=15.22 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHH--C---CCHHHHHHHHHHHHHCCCE
Q ss_conf 8999999999985598633599999981--9---9789999999999325905
Q gi|254780620|r 7 TDYGIRVLMYCAIHNDYPNRISQIAEAC--C---ISELFLFKILQPLVKAGIV 54 (144)
Q Consensus 7 ~~yAi~~l~~La~~~~~~~s~~eIA~~~--~---i~~~~l~kil~~L~~agli 54 (144)
.+-.|+-|+..+... +.+|-.+|.+.+ . +++..+..|+..|...||-
T Consensus 7 ~~~~ik~LI~~GK~~-GylTy~eIn~~LP~~~~e~~~e~ie~i~~~L~~~gI~ 58 (72)
T 2k6x_A 7 IERRIKKLISLGKKK-GYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGIN 58 (72)
T ss_dssp HHHHHHHHHHHHHHH-SSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHC-CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 999999999987526-8475999998765454416999999999999987996
No 303
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=28.18 E-value=32 Score=15.19 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHCCCC
Q ss_conf 35999999819978999999999932590573156545400023721260999999971876
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie~~~ 86 (144)
+++.|+|+..|+|+..|+ ---+.|+|...+-..|||+.=-+-+-..|.-|..+-+-..
T Consensus 1 M~Ige~Ak~~gvs~~tlR----yYe~~GLl~p~~r~~~gyR~Y~~~~v~rL~~I~~lr~~G~ 58 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIR----FYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGF 58 (135)
T ss_dssp CCHHHHHHHHTCCHHHHH----HHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 978999999891999999----9999789698766877771153989999999999988399
No 304
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=28.03 E-value=12 Score=17.65 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.1
Q ss_pred HHHHHHHHH------HHCCCEEECCCCCCCCEECCCHHHCC
Q ss_conf 999999999------32590573156545400023721260
Q gi|254780620|r 40 FLFKILQPL------VKAGIVETVRGRRGGVRLCRPADQIT 74 (144)
Q Consensus 40 ~l~kil~~L------~~agli~S~rG~~GGy~Lak~~~~It 74 (144)
-+.+...+| .|+.+...-||+.||..+++++++..
T Consensus 30 e~~~~~~~l~~~~~VvKaQvlaGGRGKaGGVki~~s~~ea~ 70 (388)
T 2nu8_B 30 EAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIR 70 (388)
T ss_dssp HHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCHHHHH
T ss_conf 99999998689959998552478876667179969999999
No 305
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.60 E-value=33 Score=15.13 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHHHHCCC
Q ss_conf 633599999981997899999999993259057315654540002372126099999997187
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~aie~~ 85 (144)
+.+|..++|+..|++++++.++. +|.. ++|.--+|..|-.+++-+
T Consensus 19 ~gls~~~LA~~~Gis~~tis~~e------------~g~~------~~p~~~~l~kia~~l~v~ 63 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMF------------EGRS------KRPTITTIRKVCGTLGIS 63 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH------------CTTC------CCCCHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH------------CCCC------CCCHHHHHHHHHHHHCCC
T ss_conf 39989999998893999999998------------6998------896899999999998993
No 306
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=27.53 E-value=33 Score=15.12 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 76456899999999998559863359999998199789999999
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil 45 (144)
++++..+-.+.-.+.-|... +-.|-++||+..|.|+.|+..++
T Consensus 5 ~~~~~~r~elte~Il~AK~~-KGlTwe~IAe~vG~S~v~vaaa~ 47 (156)
T 1dw9_A 5 QINRNIRLDLADAILLSKAK-KDLSFAEIADGTGLAEAFVTAAL 47 (156)
T ss_dssp CSCHHHHHHHHHHHHHHHHH-TTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 65623789999999999998-49999999999797999999998
No 307
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=27.16 E-value=34 Score=15.08 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=23.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 3599999981997899999999993
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLV 49 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~ 49 (144)
.|=++||+.+|+|++++.+.|+.+.
T Consensus 25 ~tQ~elAe~lg~Srs~Vsr~lrl~~ 49 (192)
T 1zx4_A 25 MSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999999998879999999999986
No 308
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.09 E-value=34 Score=15.07 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999855986335999999819978999999999
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
|.++.|....| .|.+|||+..|+|+.-+...++.
T Consensus 28 R~vi~L~~~~~--ls~~EIA~~lgis~~~V~~~l~R 61 (113)
T 1s7o_A 28 MNYIELYYADD--YSLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999973--12999999989799999999999
No 309
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.05 E-value=34 Score=15.07 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=8.9
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 59999998199789999999
Q gi|254780620|r 26 RISQIAEACCISELFLFKIL 45 (144)
Q Consensus 26 s~~eIA~~~~i~~~~l~kil 45 (144)
|.++||+..|+|...++++|
T Consensus 2 Ti~DIA~~aGVS~~TVSraL 21 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVI 21 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
T ss_conf 68999999896999999996
No 310
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protein; 1.80A {Synechococcus elongatus pcc 7942}
Probab=27.05 E-value=34 Score=15.07 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=37.4
Q ss_pred HHHHHHHCCCCCCC-HHHHHHHH---CCCHHHHHHHHHHHHHCCCEEECCCC--CCC-----CEECCCHHHC
Q ss_conf 99999855986335-99999981---99789999999999325905731565--454-----0002372126
Q gi|254780620|r 13 VLMYCAIHNDYPNR-ISQIAEAC---CISELFLFKILQPLVKAGIVETVRGR--RGG-----VRLCRPADQI 73 (144)
Q Consensus 13 ~l~~La~~~~~~~s-~~eIA~~~---~i~~~~l~kil~~L~~agli~S~rG~--~GG-----y~Lak~~~~I 73 (144)
+|..|..++--..- .++|.+.. .++...+..+|.+|.+.|+|+|.-.. .+| |+|...-++-
T Consensus 39 IL~lL~~~~~yGYeI~~~l~~~~~~~~is~gtLYp~L~rLe~~GlI~s~~~~~~~~Gr~RK~Y~IT~~Gr~~ 110 (138)
T 2e1n_A 39 VLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 110 (138)
T ss_dssp HHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHH
T ss_conf 999980799889999999999839977687623289999998898388864346789873699989889999
No 311
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.50 E-value=35 Score=15.01 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=32.0
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHH-------------CCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999985598633599999981-------------997899999999993259057315
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEAC-------------CISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~-------------~i~~~~l~kil~~L~~agli~S~r 58 (144)
+|+-||+.. ..|..||-+.+ +.++..+..++..|...|||.=.|
T Consensus 10 ~Al~~Ls~r---~~S~~eL~~kL~~k~~~~~~~~~~~~~~~~I~~vi~~l~~~gyidD~r 66 (159)
T 3c1d_A 10 RAVRILAVR---DHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSR 66 (159)
T ss_dssp HHHHHHTTS---CCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999997453---658999999999875300332123578999999999999949999899
No 312
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.48 E-value=17 Score=16.85 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999855-986335999999819978999999999932
Q gi|254780620|r 8 DYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVK 50 (144)
Q Consensus 8 ~yAi~~l~~La~~-~~~~~s~~eIA~~~~i~~~~l~kil~~L~~ 50 (144)
+.-+-+.+|+|-. .+-|.+..|||+..+++...+.|....+++
T Consensus 169 ~~i~AAcvY~ACR~~~~prtl~eia~~~~i~~k~i~r~~k~i~~ 212 (345)
T 3k7a_M 169 ESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKN 212 (345)
T ss_dssp HHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 00569999999986489977899998819879999999999999
No 313
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=26.38 E-value=35 Score=14.99 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 33599999981997899999999
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
-+|.+++|+..|+++.++.++-+
T Consensus 14 g~tq~~lA~~~Gvs~~~is~~E~ 36 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999998784988999999987
No 314
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=26.30 E-value=33 Score=15.16 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 3599999981997899999999993
Q gi|254780620|r 25 NRISQIAEACCISELFLFKILQPLV 49 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil~~L~ 49 (144)
.|-++||+..|.|+.++++.|+.|.
T Consensus 53 ~t~~~iA~~lg~s~~~V~~~l~l~~ 77 (178)
T 1r71_A 53 KKKGDIAKEIGKSPAFITQHVTLLD 77 (178)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHGGGS
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 8899999996999999999999806
No 315
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=26.23 E-value=35 Score=14.98 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999998559863359999998199789999999999
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L 48 (144)
+.++.|..-.+ .|.+|||+.+++|+.-++.-++.-
T Consensus 21 r~v~~l~~~~g--~s~~EIA~~lgis~~tvk~~l~Ra 55 (70)
T 2o8x_A 21 REALLLTQLLG--LSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp HHHHHHHHTSC--CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999899909--999999999897999999999999
No 316
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=25.83 E-value=36 Score=14.93 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHH--HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--C---CCCCCEECC
Q ss_conf 6899999999998--5598633599999981997899999999993259057315--6---545400023
Q gi|254780620|r 6 RTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--G---RRGGVRLCR 68 (144)
Q Consensus 6 ~~~yAi~~l~~La--~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r--G---~~GGy~Lak 68 (144)
++.|+=| +|+| ...+ ..++..|-+..+.|+..+.-.+..|..-|+.-... | ..|-|+|.-
T Consensus 16 k~sF~RR--LYlA~LId~~-~~nvp~L~~~TGmPRRT~QD~I~AL~dlgI~~~FvQ~G~Rnn~G~Y~I~d 82 (117)
T 3ke2_A 16 HKAFLRK--LYLAHLMDDA-RHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIRT 82 (117)
T ss_dssp HHHHHHH--HHHHHHHHHS-CCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEE
T ss_pred HHHHHHH--HHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEE
T ss_conf 9999999--9999999628-98689999885896868999998610277599996467206787478753
No 317
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=25.38 E-value=36 Score=14.88 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 633599999981997899999999
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
+-.|.+++|++.++|..+|.||.+
T Consensus 242 RGLTL~eLAkrTGIS~S~LSqIER 265 (443)
T 3g7d_A 242 RAHTRTSAAEAAGVPPADLEAALR 265 (443)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 188899999886989999999985
No 318
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.81 E-value=37 Score=14.82 Aligned_cols=23 Identities=4% Similarity=0.161 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 33599999981997899999999
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
.+|.+++|+..|+|+.++.++..
T Consensus 23 gltq~~lA~~~gvs~~~i~~~E~ 45 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999999897969999999987
No 319
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A 3lev_A* 3les_A*
Probab=24.53 E-value=38 Score=14.79 Aligned_cols=20 Identities=20% Similarity=-0.122 Sum_probs=12.8
Q ss_pred CCCCCHHHHHHHHCCCHHHH
Q ss_conf 86335999999819978999
Q gi|254780620|r 22 DYPNRISQIAEACCISELFL 41 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l 41 (144)
+..-|.++||+.++++...+
T Consensus 283 gr~pt~eeiA~~l~~~~~~~ 302 (423)
T 2a6h_F 283 GREPTYEEIAEAMGPGWDAK 302 (423)
T ss_dssp SSCCCHHHHHHHHCTTCCHH
T ss_pred CCCCCHHHHHHHHCCCHHHH
T ss_conf 89950799999967850489
No 320
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.10 E-value=38 Score=14.74 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 335999999819978999999999932590
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGI 53 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agl 53 (144)
-.|..+||+.+|||+..|.+=+......+-
T Consensus 23 g~s~~~vA~~~GIs~~tl~~W~k~~~~~~~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf 985999999978995744689999854246
No 321
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=24.04 E-value=13 Score=17.46 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 33599999981997899999999
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
.+|.++||+..|+|...+.++|+
T Consensus 4 ~vTi~dIA~~aGVS~~TVSraLn 26 (339)
T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 31199999998979999999968
No 322
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=23.78 E-value=14 Score=17.41 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 33599999981997899999999
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
.+|.+|||+..|+|...|+++|+
T Consensus 3 ~~Ti~DIA~~aGVS~~TVSrvLn 25 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLS 25 (338)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 78899999997979999999968
No 323
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=23.75 E-value=39 Score=14.70 Aligned_cols=20 Identities=20% Similarity=-0.137 Sum_probs=13.5
Q ss_pred CCCCCCHHHHHHHHCCCHHH
Q ss_conf 98633599999981997899
Q gi|254780620|r 21 NDYPNRISQIAEACCISELF 40 (144)
Q Consensus 21 ~~~~~s~~eIA~~~~i~~~~ 40 (144)
.|...|..+||+..+++..-
T Consensus 297 lgr~pt~eeia~~l~~~~~~ 316 (438)
T 1l9z_H 297 LGREPSYEEIAEAMGPGWDA 316 (438)
T ss_pred HCCCCHHHHHHHHHCCCHHH
T ss_conf 38995068999995785267
No 324
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=23.30 E-value=31 Score=15.30 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=32.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC-CCCEECCCHHHC
Q ss_conf 99999981997899999999993259057315654-540002372126
Q gi|254780620|r 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-GGVRLCRPADQI 73 (144)
Q Consensus 27 ~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~-GGy~Lak~~~~I 73 (144)
...+|+..++...-+.+.+..=.+-|.---.+|.+ ||+.|.|||..+
T Consensus 221 l~~i~~~~~id~~eV~~a~~~d~r~~~~~~~PG~G~GG~ClpkD~~~l 268 (402)
T 1dlj_A 221 LDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL 268 (402)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 999998839989999998606987656578999988787644369999
No 325
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=23.12 E-value=40 Score=14.62 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=5.8
Q ss_pred HHHHCCHHHHHH
Q ss_conf 984179999991
Q gi|254780620|r 121 VLTQYSIECLVR 132 (144)
Q Consensus 121 ~L~~~TL~dl~~ 132 (144)
..+..|+.++.+
T Consensus 172 ~~~G~s~~~IA~ 183 (209)
T 2r0q_C 172 LEEGQAISKIAK 183 (209)
T ss_dssp HHTTCCHHHHHH
T ss_pred HHCCCCHHHHHH
T ss_conf 987599999999
No 326
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=22.96 E-value=14 Score=17.26 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 33599999981997899999999
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
++|.++||+..|+|...|.++|+
T Consensus 3 k~Ti~dIA~~aGVS~sTVSraLn 25 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVN 25 (349)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 77699999998869999999967
No 327
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=22.86 E-value=37 Score=14.83 Aligned_cols=62 Identities=19% Similarity=-0.030 Sum_probs=37.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC-----CCC--CEECC-CHHHCCHH--HHHHHHCCCCCC
Q ss_conf 9999998199789999999999325905731565-----454--00023-72126099--999997187631
Q gi|254780620|r 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGR-----RGG--VRLCR-PADQITIL--DVVKATEESFFV 88 (144)
Q Consensus 27 ~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~-----~GG--y~Lak-~~~~Itl~--dI~~aie~~~~~ 88 (144)
.+-.++-.+.|..|.+-|-..|.+.|+|++++-. .|| |...- ..-.||+. .+++-+-|....
T Consensus 213 ~kik~d~EGsSDKYaR~I~~WL~k~Glv~~~~k~~vt~t~g~~~y~~tig~sY~IT~~Gl~aLkr~~G~Sk~ 284 (579)
T 2fok_A 213 GEIRNNWEGSSDKYARMIGGWLDKLGLVKQGKKEFIIPTLGKPDNKEFISHAFKITGEGLKVLRRAKGSTKF 284 (579)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTSEEECCEEEECCC-----CEEEESSEEEECHHHHHHHHHHHTCSSS
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCEECCEEEEEECCHHHHHHHHHCCCCC
T ss_conf 555336666608999999999986240044033036530477344100461389934448899986086656
No 328
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=22.71 E-value=37 Score=14.81 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCC--CC--CEECCCHHHC
Q ss_conf 33599999981997899999999993259057315-654--54--0002372126
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR--GG--VRLCRPADQI 73 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~r-G~~--GG--y~Lak~~~~I 73 (144)
=.|+.|||.--++| .....|-...++.|...-.| |.. || |.++-=|.++
T Consensus 4 W~ta~ELagLpglP-~s~~gv~~~AkregW~~r~r~G~~~G~g~EYhissLP~~~ 57 (69)
T 1g4d_A 4 WCSPQEIMAADGMP-GSVAGVHYRANVQGWTKRKKEGVKGGKAVEYDVMSMPTKE 57 (69)
T ss_dssp CBCHHHHHTSTTSC-SSHHHHHHHHHHHTCCEEECCSSTTTTCEEECGGGSCHHH
T ss_pred EECHHHHHCCCCCC-CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHCCHHH
T ss_conf 48599992699999-8889999999976900230446678875887467499999
No 329
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=22.37 E-value=42 Score=14.53 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8633599999981997899999999
Q gi|254780620|r 22 DYPNRISQIAEACCISELFLFKILQ 46 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l~kil~ 46 (144)
....|-+++|+..|+++.++.++.+
T Consensus 20 ~~~lsq~elA~~lgvs~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9499899999988928836999973
No 330
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.32 E-value=42 Score=14.53 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHCC
Q ss_conf 99999999855986335999999819978999----99999993259
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFL----FKILQPLVKAG 52 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s~~eIA~~~~i~~~~l----~kil~~L~~ag 52 (144)
=+.+|.+++. | .|.++||+.+++++..+ .+|+++|.-.+
T Consensus 32 E~evl~ll~~--G--~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~ 74 (95)
T 3c57_A 32 ERTLLGLLSE--G--LTNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp HHHHHHHHHT--T--CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHC--C--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999990--7--99999987949789999999999999978999
No 331
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=21.95 E-value=42 Score=14.48 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=31.4
Q ss_pred HHHHHHHHCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 9999998559863359999998---19978999999999932590573
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEA---CCISELFLFKILQPLVKAGIVET 56 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~---~~i~~~~l~kil~~L~~agli~S 56 (144)
+||-+|+.. ..|..||-+. -+.+...+..|+..|...|||.=
T Consensus 22 ~Al~~Ls~r---~~S~~El~~kL~~k~~~~~~i~~vI~~l~~~gyldD 66 (162)
T 3dfg_A 22 RALGLLVHR---EHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDD 66 (162)
T ss_dssp HHHHHHHHS---CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHCC---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 999986243---168999999998659999999999999999399998
No 332
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with cofactor and product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=21.56 E-value=26 Score=15.71 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEE--ECCCCC-CCCEECCCHHHC
Q ss_conf 99999981997899999999993259057--315654-540002372126
Q gi|254780620|r 27 ISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR-GGVRLCRPADQI 73 (144)
Q Consensus 27 ~~eIA~~~~i~~~~l~kil~~L~~agli~--S~rG~~-GGy~Lak~~~~I 73 (144)
...+|+..++....+.+.+..=.+-|+-. ...|.+ ||+.|.|||..+
T Consensus 227 l~~~~~~~~~d~~~v~~~~~~d~r~g~~~~~~~pG~G~GG~ClpkD~~~L 276 (436)
T 1mv8_A 227 IGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRAL 276 (436)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999870568999999973377723443445898988888757686999
No 333
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=21.50 E-value=43 Score=14.43 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCCCCCC-HHHHHHH---HCCCHHHHHHHHHHHHHCCCEEECCCCC--CC-----CEECCCHH
Q ss_conf 99999999855986335-9999998---1997899999999993259057315654--54-----00023721
Q gi|254780620|r 10 GIRVLMYCAIHNDYPNR-ISQIAEA---CCISELFLFKILQPLVKAGIVETVRGRR--GG-----VRLCRPAD 71 (144)
Q Consensus 10 Ai~~l~~La~~~~~~~s-~~eIA~~---~~i~~~~l~kil~~L~~agli~S~rG~~--GG-----y~Lak~~~ 71 (144)
.+-+|..|+..+--..- .+.|.+. ..++...+..+|.+|.+.|+|+|.-... +| |+|...-.
T Consensus 24 ~~~IL~~L~~~~~yGYeI~~~l~~~~~~~~i~~gtlYp~L~rLe~~GlI~s~~~~~~~~g~~Rk~Y~IT~~Gr 96 (115)
T 2dql_A 24 ICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQ 96 (115)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHH
T ss_conf 9999999705999899999999987697377987540999999988986999742467888735899888799
No 334
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=21.48 E-value=43 Score=14.43 Aligned_cols=22 Identities=18% Similarity=-0.004 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 3359999998199789999999
Q gi|254780620|r 24 PNRISQIAEACCISELFLFKIL 45 (144)
Q Consensus 24 ~~s~~eIA~~~~i~~~~l~kil 45 (144)
-+|-.++|+..|+++.++.++-
T Consensus 14 g~tq~~lA~~~gis~~~is~~e 35 (66)
T 1utx_A 14 KISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999887299899999998
No 335
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=21.14 E-value=44 Score=14.38 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHHHHHHHCCCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC-CCCEECCCH
Q ss_conf 999999998559863--3599999981997899999999993259057315654-540002372
Q gi|254780620|r 10 GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-GGVRLCRPA 70 (144)
Q Consensus 10 Ai~~l~~La~~~~~~--~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~-GGy~Lak~~ 70 (144)
+.+.|-.+....+-| .+..+|+...+.+.+-..+++..|+++|+--|.---. +|+.=.-|.
T Consensus 305 ~~~ll~~i~~E~~~P~~y~~~~i~~~lk~~~P~~~~~~~~L~~~Gy~asrtH~~p~~iKTnAp~ 368 (378)
T 2dul_A 305 ALKLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPY 368 (378)
T ss_dssp HHHHHHHHHHSCCSSCCEEHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESSCH
T ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEECCCCH
T ss_conf 9999999985339990887899998729999999999999997798899767899977525999
No 336
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=20.95 E-value=44 Score=14.36 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 63359999998199789999999
Q gi|254780620|r 23 YPNRISQIAEACCISELFLFKIL 45 (144)
Q Consensus 23 ~~~s~~eIA~~~~i~~~~l~kil 45 (144)
.-+|.+++|+..|+++.++.++-
T Consensus 40 ~glsq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 19999999999797898899998
No 337
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=20.84 E-value=45 Score=14.35 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCCCC-HHHHHHH---HCCCHHHHHHHHHHHHHCCCEEECCCC--CCC-----CEECCCHHHC
Q ss_conf 99999855986335-9999998---199789999999999325905731565--454-----0002372126
Q gi|254780620|r 13 VLMYCAIHNDYPNR-ISQIAEA---CCISELFLFKILQPLVKAGIVETVRGR--RGG-----VRLCRPADQI 73 (144)
Q Consensus 13 ~l~~La~~~~~~~s-~~eIA~~---~~i~~~~l~kil~~L~~agli~S~rG~--~GG-----y~Lak~~~~I 73 (144)
+|..|+.++--..- .+.|.+. ..++...+..+|.+|.+.|+|++.-.. .+| |+|...-++.
T Consensus 49 IL~lL~~~~~yGYeI~q~le~~~~~~~is~GtLYp~L~rLe~~GlI~s~~~~~e~~G~~RK~Y~ITe~Gr~~ 120 (148)
T 2zfw_A 49 VLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 120 (148)
T ss_dssp HHHHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCST
T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHH
T ss_conf 999980799889999999999829977677541899999998898488863347789887389869889999
No 338
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.81 E-value=45 Score=14.34 Aligned_cols=35 Identities=17% Similarity=-0.092 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999985598633599999981997899999999993
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~ 49 (144)
..++.+++. | .|.++||+..++|+.-++.-++.+.
T Consensus 22 ~~vl~~l~~--G--~s~~eIA~~l~iS~~TV~~~~~~i~ 56 (79)
T 1x3u_A 22 RQVLSAVVA--G--LPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HHHHHHHTT--T--CCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--C--CCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999990--7--9999999997988989999999999
No 339
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.70 E-value=17 Score=16.82 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 86335999999819978999999999
Q gi|254780620|r 22 DYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 22 ~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
.+.+|.++||+..|+|...|.++|+.
T Consensus 4 ~~k~Ti~diA~~aGVS~aTVSr~Ln~ 29 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99987999999989799999999689
No 340
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=20.62 E-value=45 Score=14.32 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHC-CHHHHHHH
Q ss_conf 97899999999993259057315654540002372126-09999999
Q gi|254780620|r 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TILDVVKA 81 (144)
Q Consensus 36 i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~I-tl~dI~~a 81 (144)
..++-+.+++..++....|-..+= -+|++++.+. .+.+.++.
T Consensus 43 ~~R~~~~~ll~~~~~gd~ivv~~l----~Rl~R~~~~~~~~~~~l~~ 85 (183)
T 1gdt_A 43 SDRKGLDLLRMKVEEGDVILVKKL----DRLGRDTADMIQLIKEFDA 85 (183)
T ss_dssp SCCHHHHHHHHHCCTTCEEEESSG----GGTCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHHHHHHHHHH
T ss_conf 666306664120479998999623----4020217999999999875
No 341
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=20.56 E-value=45 Score=14.31 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999855986335999999819978999999999
Q gi|254780620|r 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 (144)
Q Consensus 13 ~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 47 (144)
-++.|..-.+ .|.++||+..++|..-+.+.++.
T Consensus 44 ~vi~l~~~~g--~s~~eIA~~lgis~~tV~~~l~R 76 (92)
T 3hug_A 44 AVIQRSYYRG--WSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp HHHHHHHTSC--CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999939--99999999989699999999999
No 342
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.15 E-value=46 Score=14.26 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHH
Q ss_conf 9999999855986335999999819978999----99999993
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFL----FKILQPLV 49 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l----~kil~~L~ 49 (144)
..++.+++ .| .|.++||+..++|+..+ .+|+.+|.
T Consensus 17 ~~vl~~l~--~G--~s~~eIA~~L~iS~~TV~~h~~~i~~Kl~ 55 (74)
T 1fse_A 17 REVFELLV--QD--KTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp HHHHHHHT--TT--CCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--CC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999--27--99999999979899999999999999958
No 343
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.13 E-value=46 Score=14.29 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=18.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 359999998199789999999
Q gi|254780620|r 25 NRISQIAEACCISELFLFKIL 45 (144)
Q Consensus 25 ~s~~eIA~~~~i~~~~l~kil 45 (144)
.|..+||+..|+++.-+.+-|
T Consensus 22 ~s~~~iA~~~gVsr~TlYryl 42 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHS
T ss_pred CCHHHHHHHHCCCHHHHHHHC
T ss_conf 989999999797999999985
Done!