BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] (144 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040297|gb|ACT57093.1| iron-responsive transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 144 Score = 296 bits (758), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR Sbjct: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD Sbjct: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VLTQYSIECLVRNRSSIKKIFNAG Sbjct: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 >gi|315121821|ref|YP_004062310.1| iron-responsive transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495223|gb|ADR51822.1| iron-responsive transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 144 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/143 (79%), Positives = 128/143 (89%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLTKRTDYGIRVLMYCA++ D PNRI+QIAEACCISE FLFKILQPL KAGI+ETVRGR Sbjct: 1 MHLTKRTDYGIRVLMYCALNQDCPNRIAQIAEACCISEFFLFKILQPLGKAGIIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRLCRPADQIT+LDVVKATEESF++AECF HKI CPLVG+C L+SV +KALNAFFD Sbjct: 61 NGGVRLCRPADQITVLDVVKATEESFYMAECFGKHKISCPLVGNCNLSSVFQKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL +YSIECLV++RS KK+ A Sbjct: 121 VLKRYSIECLVQDRSLYKKLLKA 143 >gi|222084938|ref|YP_002543467.1| rhizobial iron transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722386|gb|ACM25542.1| rhizobial iron transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 162 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 87/138 (63%), Positives = 108/138 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + Y +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGYLSRIPEIAKAYGVSELFLFKILQPLTKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +P I++ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFFD Sbjct: 61 NGGVRLGKPPTDISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VLT+YSI+ LV+ R I Sbjct: 121 VLTEYSIDDLVKARPQIN 138 >gi|15964483|ref|NP_384836.1| iron-responsive transcriptional regulator [Sinorhizobium meliloti 1021] gi|307308426|ref|ZP_07588130.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|307318989|ref|ZP_07598420.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|8469098|sp|Q9R9M8|AAU3_RHIME RecName: Full=Protein aau3 gi|15073660|emb|CAC45302.1| Transcriptional regulator of the iron limitation response [Sinorhizobium meliloti 1021] gi|306895403|gb|EFN26158.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306901029|gb|EFN31637.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 154 Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 87/138 (63%), Positives = 109/138 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+ Sbjct: 61 NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL Y+I+ LV+ R I Sbjct: 121 VLQGYTIDDLVKARPQIN 138 >gi|227820925|ref|YP_002824895.1| iron-responsive transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339924|gb|ACP24142.1| putative transcriptional regulator, Rrf2 family [Sinorhizobium fredii NGR234] Length = 154 Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 86/137 (62%), Positives = 110/137 (80%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA+A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAKAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA +I++ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFFD Sbjct: 61 NGGVRLPKPASEISLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL Y+I+ LV+ R I Sbjct: 121 VLKGYTIDDLVKARPQI 137 >gi|325291641|ref|YP_004277505.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3] gi|325059494|gb|ADY63185.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3] Length = 156 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/137 (63%), Positives = 108/137 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA++I++ DVVK TE+SF +AECF ++CPLV SCGL S LRKALNAFFD Sbjct: 61 NGGVRLGKPAEKISLFDVVKVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL +YSI+ LV+ R I Sbjct: 121 VLAEYSIDDLVKARPQI 137 >gi|6224919|gb|AAF06014.1|AF193764_1 Aau3 protein [Sinorhizobium meliloti] Length = 154 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/138 (63%), Positives = 109/138 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAGAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+ Sbjct: 61 NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL Y+I+ LV+ R I Sbjct: 121 VLQGYTIDDLVKARPQIN 138 >gi|150395554|ref|YP_001326021.1| iron-responsive transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027069|gb|ABR59186.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 154 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/138 (63%), Positives = 108/138 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+ Sbjct: 61 NGGVRLPRPAAEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL Y+I+ LV+ R I Sbjct: 121 VLQGYTIDDLVKARPQIN 138 >gi|15887554|ref|NP_353235.1| iron-responsive transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155087|gb|AAK86020.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 156 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/137 (62%), Positives = 108/137 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA++I++ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFFD Sbjct: 61 NGGVRLGKPAEKISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL +YSI+ LV+ R I Sbjct: 121 VLAEYSIDDLVKARPQI 137 >gi|222147641|ref|YP_002548598.1| iron-responsive transcriptional regulator [Agrobacterium vitis S4] gi|221734629|gb|ACM35592.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 156 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 86/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + D+ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRILMYCAANKDHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL R ++I++ DVVK TE+SF +AECF ++DCPL+ SCGL S LRKALNAFF Sbjct: 61 NGGVRLGRAPEKISLFDVVKVTEDSFAMAECFEDDGEVDCPLIDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL +YSI+ LV+ R I Sbjct: 121 AVLAEYSIDDLVKARPQIN 139 >gi|163758625|ref|ZP_02165712.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43] gi|162283915|gb|EDQ34199.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43] Length = 149 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 84/138 (60%), Positives = 107/138 (77%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++ +RI IA+A +SELFLFKILQPL KAG+VE+VRGR Sbjct: 1 MRLTRQTNYAVRMLMYCAANDGNLSRIGDIAKAYSVSELFLFKILQPLTKAGLVESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R AD+IT+LDVV TE+SF +AECF + +CPLV SCGL + LRKAL AFF+ Sbjct: 61 NGGIRLGRAADKITLLDVVSVTEDSFAMAECFENDATECPLVDSCGLNTALRKALGAFFE 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL YSI+ LV+ R SI Sbjct: 121 VLATYSIDDLVKARPSIN 138 >gi|241203174|ref|YP_002974270.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857064|gb|ACS54731.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 86/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA I++ DVV+ TE+SF +AECF ++DCPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVDCPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL++YSI+ LV+ R I Sbjct: 121 AVLSEYSIDDLVKARPQIN 139 >gi|13516334|emb|CAC35510.1| rhizobial iron regulator [Rhizobium leguminosarum bv. viciae] Length = 160 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/139 (61%), Positives = 110/139 (79%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA I++ DVV+ TE+SF +AECF +++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL++YSI+ LV+ R I Sbjct: 121 AVLSEYSIDDLVKARPQIN 139 >gi|209547997|ref|YP_002279914.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533753|gb|ACI53688.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/139 (61%), Positives = 108/139 (77%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL++YSI+ LV+ R I Sbjct: 121 AVLSEYSIDDLVKARPQIN 139 >gi|116250549|ref|YP_766387.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255197|emb|CAK06271.1| Rhizobium iron regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 160 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA I++ DVV+ TE+SF +AECF +++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL++YSI+ LV+ R I Sbjct: 121 AVLSEYSIDDLVKARPQIN 139 >gi|327190570|gb|EGE57662.1| iron-responsive transcriptional regulator [Rhizobium etli CNPAF512] Length = 160 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/139 (61%), Positives = 107/139 (76%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL RPA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGRPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL++Y+I+ LV+ R I Sbjct: 121 AVLSEYTIDDLVKARPQIN 139 >gi|86356384|ref|YP_468276.1| iron-responsive transcriptional regulator [Rhizobium etli CFN 42] gi|190890437|ref|YP_001976979.1| rhizobial iron transcriptional regulator protein [Rhizobium etli CIAT 652] gi|86280486|gb|ABC89549.1| rhizobial iron transcriptional regulator protein [Rhizobium etli CFN 42] gi|190695716|gb|ACE89801.1| rhizobial iron transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 160 Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 85/139 (61%), Positives = 107/139 (76%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL++Y+I+ LV+ R I Sbjct: 121 AVLSEYTIDDLVKARPQIN 139 >gi|13471232|ref|NP_102801.1| iron-responsive transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14021976|dbj|BAB48587.1| Aau3 protein [Mesorhizobium loti MAFF303099] Length = 153 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 81/141 (57%), Positives = 107/141 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA +ND +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y+I +V R +++ + Sbjct: 121 VLARYTIADMVAARPNVRNLL 141 >gi|218663399|ref|ZP_03519329.1| iron-responsive transcriptional regulator [Rhizobium etli IE4771] Length = 160 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 85/139 (61%), Positives = 107/139 (76%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 VL+ Y+I+ LV+ R I Sbjct: 121 AVLSDYTIDDLVKARPQIN 139 >gi|260459730|ref|ZP_05807984.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259034532|gb|EEW35789.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 153 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/141 (57%), Positives = 107/141 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA +ND +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAMRILMYCAANNDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y+I +V R +++ + Sbjct: 121 VLERYTIADMVAARPNVRSLL 141 >gi|319783139|ref|YP_004142615.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169027|gb|ADV12565.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 154 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/141 (56%), Positives = 107/141 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++D +RI +IA A +SELFLFKILQPLV+ G+V+TVRGR Sbjct: 1 MRLTRQTNYAMRILMYCAANDDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVKLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y+I LV R +++ + Sbjct: 121 VLARYTIADLVAARPNVRNLL 141 >gi|239833919|ref|ZP_04682247.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] gi|239821982|gb|EEQ93551.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] Length = 211 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/141 (56%), Positives = 106/141 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 59 MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 118 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I++ DVV+ TEE+F +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 119 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 178 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +YSI LV+ R +++ + Sbjct: 179 VLMKYSIADLVKARPNVRHLL 199 >gi|153010938|ref|YP_001372152.1| iron-responsive transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562826|gb|ABS16323.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi ATCC 49188] Length = 153 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 80/141 (56%), Positives = 106/141 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I++ DVV+ TEE+F +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRHLL 141 >gi|23500306|ref|NP_699746.1| iron-responsive transcriptional regulator [Brucella suis 1330] gi|161620624|ref|YP_001594510.1| iron-responsive transcriptional regulator [Brucella canis ATCC 23365] gi|254702937|ref|ZP_05164765.1| iron-responsive transcriptional regulator [Brucella suis bv. 3 str. 686] gi|260568151|ref|ZP_05838620.1| RrF2 family protein [Brucella suis bv. 4 str. 40] gi|261753543|ref|ZP_05997252.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|23463917|gb|AAN33751.1| RrF2 family protein [Brucella suis 1330] gi|161337435|gb|ABX63739.1| rrf2 family protein [Brucella canis ATCC 23365] gi|260154816|gb|EEW89897.1| RrF2 family protein [Brucella suis bv. 4 str. 40] gi|261743296|gb|EEY31222.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 153 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/138 (58%), Positives = 106/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLVK G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVKHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 121 VLMKYSIADLVKARPNVR 138 >gi|225629057|ref|ZP_03787090.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] gi|225615553|gb|EEH12602.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] Length = 180 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 80/138 (57%), Positives = 106/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 28 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 88 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 148 VLMKYSIADLVKARPNVR 165 >gi|237817129|ref|ZP_04596121.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] gi|237787942|gb|EEP62158.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] Length = 180 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 80/138 (57%), Positives = 106/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 28 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 88 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 148 VLMKYSIADLVKARPNVR 165 >gi|17989052|ref|NP_541685.1| iron-responsive transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|148557978|ref|YP_001257553.1| iron-responsive transcriptional regulator [Brucella ovis ATCC 25840] gi|225686349|ref|YP_002734321.1| iron-responsive transcriptional regulator [Brucella melitensis ATCC 23457] gi|254699801|ref|ZP_05161629.1| iron-responsive transcriptional regulator [Brucella suis bv. 5 str. 513] gi|254705944|ref|ZP_05167772.1| iron-responsive transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|254711169|ref|ZP_05172980.1| iron-responsive transcriptional regulator [Brucella pinnipedialis B2/94] gi|254720448|ref|ZP_05182259.1| iron-responsive transcriptional regulator [Brucella sp. 83/13] gi|256029550|ref|ZP_05443164.1| iron-responsive transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|256043455|ref|ZP_05446384.1| iron-responsive transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256059242|ref|ZP_05449448.1| iron-responsive transcriptional regulator [Brucella neotomae 5K33] gi|256111523|ref|ZP_05452537.1| iron-responsive transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|256157745|ref|ZP_05455663.1| iron-responsive transcriptional regulator [Brucella ceti M490/95/1] gi|256253285|ref|ZP_05458821.1| iron-responsive transcriptional regulator [Brucella ceti B1/94] gi|256262513|ref|ZP_05465045.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|260167360|ref|ZP_05754171.1| iron-responsive transcriptional regulator [Brucella sp. F5/99] gi|260564653|ref|ZP_05835138.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|261220398|ref|ZP_05934679.1| transcriptional regulator [Brucella ceti B1/94] gi|261313373|ref|ZP_05952570.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261318761|ref|ZP_05957958.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261323195|ref|ZP_05962392.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750271|ref|ZP_05993980.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261756768|ref|ZP_06000477.1| RrF2 family protein [Brucella sp. F5/99] gi|265985470|ref|ZP_06098205.1| transcriptional regulator [Brucella sp. 83/13] gi|265986559|ref|ZP_06099116.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265989875|ref|ZP_06102432.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993019|ref|ZP_06105576.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265996251|ref|ZP_06108808.1| transcriptional regulator [Brucella ceti M490/95/1] gi|294853640|ref|ZP_06794312.1| rirA [Brucella sp. NVSL 07-0026] gi|306839690|ref|ZP_07472493.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] gi|306841790|ref|ZP_07474476.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] gi|306845894|ref|ZP_07478462.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] gi|17984895|gb|AAL53949.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M] gi|148369263|gb|ABQ62135.1| RrF2 family protein [Brucella ovis ATCC 25840] gi|225642454|gb|ACO02367.1| Transcriptional regulator, Rrf2 family protein [Brucella melitensis ATCC 23457] gi|260152296|gb|EEW87389.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|260918982|gb|EEX85635.1| transcriptional regulator [Brucella ceti B1/94] gi|261297984|gb|EEY01481.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261299175|gb|EEY02672.1| transcriptional regulator [Brucella neotomae 5K33] gi|261302399|gb|EEY05896.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261736752|gb|EEY24748.1| RrF2 family protein [Brucella sp. F5/99] gi|261740024|gb|EEY27950.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262550548|gb|EEZ06709.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262763889|gb|EEZ09921.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263000544|gb|EEZ13234.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092248|gb|EEZ16545.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|264658756|gb|EEZ29017.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264664062|gb|EEZ34323.1| transcriptional regulator [Brucella sp. 83/13] gi|294819295|gb|EFG36295.1| rirA [Brucella sp. NVSL 07-0026] gi|306273786|gb|EFM55624.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] gi|306288195|gb|EFM59582.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] gi|306405270|gb|EFM61546.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] gi|326410717|gb|ADZ67781.1| iron-responsive transcriptional regulator [Brucella melitensis M28] gi|326554010|gb|ADZ88649.1| iron-responsive transcriptional regulator [Brucella melitensis M5-90] Length = 153 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 80/138 (57%), Positives = 106/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 121 VLMKYSIADLVKARPNVR 138 >gi|62317580|ref|YP_223433.1| iron-responsive transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269562|ref|YP_418853.1| iron-responsive transcriptional regulator [Brucella melitensis biovar Abortus 2308] gi|189022834|ref|YP_001932575.1| iron-responsive transcriptional regulator [Brucella abortus S19] gi|254691079|ref|ZP_05154333.1| iron-responsive transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|254695615|ref|ZP_05157443.1| iron-responsive transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|254698864|ref|ZP_05160692.1| iron-responsive transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254732311|ref|ZP_05190889.1| iron-responsive transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|256256264|ref|ZP_05461800.1| iron-responsive transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260544818|ref|ZP_05820639.1| RrF2 family protein [Brucella abortus NCTC 8038] gi|260756675|ref|ZP_05869023.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260760106|ref|ZP_05872454.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260763344|ref|ZP_05875676.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882492|ref|ZP_05894106.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261216014|ref|ZP_05930295.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|297249620|ref|ZP_06933321.1| rirA, iron-responsive transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|62197773|gb|AAX76072.1| RrF2 family protein [Brucella abortus bv. 1 str. 9-941] gi|82939836|emb|CAJ12844.1| Protein of unknown function UPF0074 [Brucella melitensis biovar Abortus 2308] gi|189021408|gb|ACD74129.1| RrF2 family protein [Brucella abortus S19] gi|260098089|gb|EEW81963.1| RrF2 family protein [Brucella abortus NCTC 8038] gi|260670424|gb|EEX57364.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673765|gb|EEX60586.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676783|gb|EEX63604.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872020|gb|EEX79089.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260917621|gb|EEX84482.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|297173489|gb|EFH32853.1| rirA, iron-responsive transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 153 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 80/138 (57%), Positives = 106/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 121 VLMKYSIADLVKARPNVR 138 >gi|163844714|ref|YP_001622369.1| iron-responsive transcriptional regulator [Brucella suis ATCC 23445] gi|163675437|gb|ABY39547.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC 23445] Length = 153 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 80/138 (57%), Positives = 106/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 121 VLMKYSIADLVKARPNVR 138 >gi|254712372|ref|ZP_05174183.1| iron-responsive transcriptional regulator [Brucella ceti M644/93/1] gi|254715444|ref|ZP_05177255.1| iron-responsive transcriptional regulator [Brucella ceti M13/05/1] gi|261217178|ref|ZP_05931459.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261320049|ref|ZP_05959246.1| transcriptional regulator [Brucella ceti M644/93/1] gi|260922267|gb|EEX88835.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261292739|gb|EEX96235.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 153 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/138 (57%), Positives = 106/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYTIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 121 VLMKYSIADLVKARPNVR 138 >gi|256015338|ref|YP_003105347.1| RrF2 family protein [Brucella microti CCM 4915] gi|255997998|gb|ACU49685.1| RrF2 family protein [Brucella microti CCM 4915] Length = 153 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/138 (57%), Positives = 105/138 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F + ECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMTECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +YSI LV+ R +++ Sbjct: 121 VLMKYSIADLVKARPNVR 138 >gi|110633798|ref|YP_674006.1| iron-responsive transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284782|gb|ABG62841.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp. BNC1] Length = 153 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/141 (55%), Positives = 105/141 (74%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA + +RI IA+A +S+LFLFKILQPLV+AG V+TVRGR Sbjct: 1 MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA+ IT+ DV++ TEESF +AECF + +CPLV CGL LRKAL AFF+ Sbjct: 61 NGGVKLGKPAEDITLFDVIRVTEESFAMAECF-ENDTECPLVDGCGLNEALRKALGAFFE 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL Y+I+ LV R +++ + Sbjct: 120 VLASYTIQDLVDARPNMRDVL 140 >gi|90419071|ref|ZP_01226982.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337151|gb|EAS50856.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 160 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 78/139 (56%), Positives = 103/139 (74%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA + +RI IA A SELFLFKILQPLV+AG+VETVRGR Sbjct: 7 MRLTRQTNYAIRILMYCASNGGQLSRIKDIAAAYSASELFLFKILQPLVEAGMVETVRGR 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA I + +VV+ TEE+F +AECF + +DCPL+ SC L S LR+ALNAF Sbjct: 67 NGGVRLARPAAAINLRNVVEVTEENFALAECFETGAVDCPLIESCELNSALREALNAFLG 126 Query: 121 VLTQYSIECLVRNRSSIKK 139 L Y+I+ L+ N++ +++ Sbjct: 127 ALGNYTIDDLLGNKAFMRR 145 >gi|49475376|ref|YP_033417.1| iron-responsive transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238182|emb|CAF27391.1| hypothetical protein BH05830 [Bartonella henselae str. Houston-1] Length = 155 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/132 (57%), Positives = 103/132 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA+A +SELFLFKILQPLV+AG V+TVRGR Sbjct: 1 MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DVVK TE++F +AECF + K +CPL+ C L + L+KALNAFFD Sbjct: 61 NGGVKLAKPAAEISVADVVKVTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFD 120 Query: 121 VLTQYSIECLVR 132 VL+ S+ L R Sbjct: 121 VLSVISLADLQR 132 >gi|49474135|ref|YP_032177.1| iron-responsive transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239639|emb|CAF25998.1| aau3 protein [Bartonella quintana str. Toulouse] Length = 148 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 75/132 (56%), Positives = 101/132 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI IA+A ISE FLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCADNQGSLSRIPDIAKAYAISEFFLFKILQPLVEAGFIQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L +PA +I++ DVVK TE++F +AECF + K +CPL+ CGL + L+KALNAFFD Sbjct: 61 NGGIKLAKPAAEISVADVVKVTEDNFSMAECFNTAKSNCPLIDFCGLNTALQKALNAFFD 120 Query: 121 VLTQYSIECLVR 132 VL+ S+ L R Sbjct: 121 VLSMISLADLQR 132 >gi|319898771|ref|YP_004158864.1| hypothetical protein BARCL_0601 [Bartonella clarridgeiae 73] gi|319402735|emb|CBI76282.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 159 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/130 (56%), Positives = 102/130 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPLV+AG ++TVRGR Sbjct: 9 MRLTKQTNYALRMLMYCASNQGALSRIPEIAKAHAVSELFLFKILQPLVEAGFMQTVRGR 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + DCPL+ CGL +VL+KAL++FFD Sbjct: 69 NGGVKLAKPAKEISVADVIKITEDNFSMAECFDNKLSDCPLINFCGLNTVLKKALDSFFD 128 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 129 VLSMTSIADL 138 >gi|319408357|emb|CBI82010.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 137 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 74/130 (56%), Positives = 99/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + D + I +IA+ ISELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKKTNYALRILMYCASNQDSLSSIPEIAKTYAISELFLFKILQPLVEAGFLQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L +PA +I++ DVVK E++F +AECF +++CPLV SC L VL+ ALNAFFD Sbjct: 61 NGGIKLAKPATEISVADVVKIIEDNFSMAECFDKTEVNCPLVNSCNLNIVLKNALNAFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSTTSISDL 130 >gi|319407107|emb|CBI80744.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 151 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 100/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCASNQEALSRIPEIASTYAVSELFLFKILQPLVEAGFIKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + +CPL+ CGL VL+KAL++FFD Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSLTSIADL 130 >gi|319405537|emb|CBI79156.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 151 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 73/130 (56%), Positives = 101/130 (77%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCASNQGALSRIPEIARAYAVSELFLFKILQPLVEAGFMKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F++AECF + +CPL+ CGL VL+KAL++FFD Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFYMAECFDNKLSNCPLINFCGLNIVLKKALDSFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSLTSIADL 130 >gi|319404095|emb|CBI77683.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 151 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 100/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCASNQEALSRIPEIANTYAVSELFLFKILQPLVEAGFMKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + +CPL+ CGL VL+KAL++FFD Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSLTSIADL 130 >gi|163868066|ref|YP_001609270.1| iron-responsive transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161017717|emb|CAK01275.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 144 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 72/132 (54%), Positives = 101/132 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +R+S+IA+A +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCADNQGSLSRVSEIAKAYAVSELFLFKILQPLVQAGFIQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + + CPL+ C L L+KAL+AFFD Sbjct: 61 NGGVKLAKPATEISVADVLKVTEDNFSLAECFDNAEPTCPLIDFCSLNIALQKALSAFFD 120 Query: 121 VLTQYSIECLVR 132 VL+ S+ L R Sbjct: 121 VLSVISLADLQR 132 >gi|240850269|ref|YP_002971662.1| iron-responsive transcriptional regulator [Bartonella grahamii as4aup] gi|240267392|gb|ACS50980.1| iron-responsive transcriptional regulator [Bartonella grahamii as4aup] Length = 147 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/130 (54%), Positives = 99/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +R+ +IA+A +SELFLFKILQ LV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCADNQGTLSRVPEIAKAYAVSELFLFKILQLLVQAGFIQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA +I++ DVVK TE++F +AECF + + CPL+ C L + L+KALNAFF+ Sbjct: 61 NGGVRLAKPAAEISVADVVKVTEDNFSLAECFDTAEPTCPLIDFCSLNTALQKALNAFFE 120 Query: 121 VLTQYSIECL 130 VL+ S+ L Sbjct: 121 VLSVISLADL 130 >gi|114705699|ref|ZP_01438602.1| Aau3 protein [Fulvimarina pelagi HTCC2506] gi|114538545|gb|EAU41666.1| Aau3 protein [Fulvimarina pelagi HTCC2506] Length = 149 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/141 (50%), Positives = 99/141 (70%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMY A++ D +R+ +IA+A E F+FKIL PLV AG+VETVRGR Sbjct: 1 MRLTRQTNYAIRILMYLAVNKDRLSRLGEIAKAYSAPEPFMFKILNPLVSAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A +I + +VV+ TEESF +AECF + DCPL+ SC L + LR+AL AF Sbjct: 61 NGGIRLAREATRINLREVVELTEESFQMAECFETGA-DCPLIFSCELNAALRQALEAFLS 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L +YS+E L +N+ + + Sbjct: 120 TLGRYSLEDLTKNKGYLHRTL 140 >gi|118589790|ref|ZP_01547195.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614] gi|118437876|gb|EAV44512.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614] Length = 154 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 100/141 (70%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R LMYCA++ D P++++ IA + +SE LFKI++ LV A +++T+RGR Sbjct: 1 MRLTQQTNYAVRALMYCAVNPDKPSKVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L RPA++I++ +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF + Sbjct: 61 NGGVMLARPAEKISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL SI L +R ++ + Sbjct: 121 VLDGKSIADLSEDRFGMRDLL 141 >gi|307947490|ref|ZP_07662823.1| protein Aau3 [Roseibium sp. TrichSKD4] gi|307769308|gb|EFO28536.1| protein Aau3 [Roseibium sp. TrichSKD4] Length = 153 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 100/141 (70%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R LMYCA++ D P+R++ IA + +SE LFKI++ LV A +++T+RGR Sbjct: 1 MRLTQQTNYAVRALMYCAVNPDKPSRVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L +PA+ I++ +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF + Sbjct: 61 NGGVMLAKPAETISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL SI L +R ++++ Sbjct: 121 VLDTKSIADLSEDRFGMRELL 141 >gi|254473748|ref|ZP_05087143.1| protein Aau3 [Pseudovibrio sp. JE062] gi|211957134|gb|EEA92339.1| protein Aau3 [Pseudovibrio sp. JE062] Length = 142 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/128 (50%), Positives = 91/128 (71%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA + D P+++++IA + +SE LFKI++ LV A +++T+RGR GG+ L RPA+QI+ Sbjct: 1 MYCAANPDKPSKVAEIAASFSMSETHLFKIMKVLVDADLMKTIRGRNGGIVLPRPAEQIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + VV+ATEESF +AECF S + DCPLV CG SVL +AL AF VL + +I L NR Sbjct: 61 VGQVVRATEESFLLAECFDSGRQDCPLVNHCGFNSVLHEALEAFLGVLDKCTIADLADNR 120 Query: 135 SSIKKIFN 142 +SI+ + Sbjct: 121 ASIRHLLQ 128 >gi|328545191|ref|YP_004305300.1| transcriptional regulator superfamily [polymorphum gilvum SL003B-26A1] gi|326414933|gb|ADZ71996.1| Transcriptional regulator superfamily [Polymorphum gilvum SL003B-26A1] Length = 137 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 59/128 (46%), Positives = 91/128 (71%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA + + P++++ IA + +SE LFKI++ LV G+++T+RGR GG+ L RPA++IT Sbjct: 1 MYCAANPERPSKVADIAASFAMSETHLFKIMKVLVDGGLIKTIRGRNGGIVLARPANKIT 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I +VV+ EESF++AECF S + DCP++ +CG VL +AL AF DVL +IE + NR Sbjct: 61 IGEVVRVAEESFYLAECFNSGRKDCPILTTCGFNGVLHEALEAFMDVLDSKTIEDIAENR 120 Query: 135 SSIKKIFN 142 ++K+ + Sbjct: 121 KDLRKLLH 128 >gi|163761538|ref|ZP_02168610.1| iron-responsive transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162281252|gb|EDQ31551.1| iron-responsive transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 155 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/137 (46%), Positives = 89/137 (64%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +T+Y +R+LM+C D ++ +IA + E FLF ILQ L G++ET RGR Sbjct: 1 MKLTSQTNYAVRMLMFCHSKGDRA-KVKEIAAFYGLPERFLFNILQRLTAVGLMETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA+QI + DVV+ EE+F +AECF + DCPL+ +CGL L +AL +FFD Sbjct: 60 GGGIRLARPAEQIMLGDVVRLVEENFEMAECFEAGGTDCPLINTCGLNKALSEALRSFFD 119 Query: 121 VLTQYSIECLVRNRSSI 137 L +YSI L + +I Sbjct: 120 SLNRYSIADLTGSEFNI 136 >gi|218514457|ref|ZP_03511297.1| iron-responsive transcriptional regulator [Rhizobium etli 8C-3] Length = 146 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 68/127 (53%), Positives = 89/127 (70%), Gaps = 9/127 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSC--------GLTSVL 111 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV S G +L Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSLRPEFGAAQGAQCLL 120 Query: 112 RKALNAF 118 R+A+ + Sbjct: 121 RRAVGIY 127 >gi|254503973|ref|ZP_05116124.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] gi|222440044|gb|EEE46723.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] Length = 140 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 61/128 (47%), Positives = 88/128 (68%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA++ D P+R++ IA + +SE LFKI++ LV A ++ T+RGR GGV L RPA+ I+ Sbjct: 1 MYCAVNPDKPSRVADIAASFEMSETHLFKIMKVLVDANLIRTIRGRNGGVMLARPAEAIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF +VL SI L +R Sbjct: 61 VGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFMEVLDAKSIADLSEDR 120 Query: 135 SSIKKIFN 142 ++ + N Sbjct: 121 FGMRTLLN 128 >gi|304393239|ref|ZP_07375167.1| protein Aau3 [Ahrensia sp. R2A130] gi|303294246|gb|EFL88618.1| protein Aau3 [Ahrensia sp. R2A130] Length = 158 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 90/138 (65%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK+T+Y +R+LMYCA H + R+S +A +S+ F+ K+LQ KAG V+T+RGR Sbjct: 1 MQITKQTNYALRMLMYCAAH-EGSVRLSDVATFYGLSQSFMHKVLQTTSKAGFVKTMRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP ++IT+ +VV+A E+ F +AECF CPL SCGL +AL+AF Sbjct: 60 SGGLMLARPPEEITVGEVVRAVEDRFEMAECF-REDTTCPLEQSCGLNGAFHEALDAFLT 118 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++I + R++I Sbjct: 119 VLDKHTIADITNERANIN 136 >gi|218462293|ref|ZP_03502384.1| iron-responsive transcriptional regulator [Rhizobium etli Kim 5] Length = 89 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 56/89 (62%), Positives = 72/89 (80%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLSKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GGVRL +PA IT+ DVV+ TE+SF +A Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMA 89 >gi|300689754|ref|YP_003750749.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum PSI07] gi|299076814|emb|CBJ49424.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum PSI07] Length = 172 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 86/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQQLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGIALGRPAAEINIGDVVRATEPDFSLVECFHGDDNHCVITRVCGLRGVLTAALRAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDAYTLQDLIDRPAALNRVLAEG 144 >gi|299065123|emb|CBJ36287.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum CMR15] Length = 192 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 87/144 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 21 MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 80 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DVV+ATE F + ECF + C + CGL VL AL A+F+ Sbjct: 81 AGGITLGRPAAEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 140 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 141 VLDTYTLQDLIERPAALNRVLAEG 164 >gi|17548114|ref|NP_521516.1| hypothetical protein RSc3397 [Ralstonia solanacearum GMI1000] gi|17430421|emb|CAD16894.1| putative of unknown function upf0074; transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 172 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 87/144 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQNGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DVV+ATE F + ECF + C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAVEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDTYTLQDLIERPAALNRVLAEG 144 >gi|300702436|ref|YP_003744036.1| hth-type transcriptional regulator nsrr [Ralstonia solanacearum CFBP2957] gi|299070097|emb|CBJ41384.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum CFBP2957] Length = 170 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 85/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA I I DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAADINIGDVVRATEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144 >gi|207722055|ref|YP_002252493.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] gi|207741831|ref|YP_002258223.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] gi|206587229|emb|CAQ17813.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] gi|206593215|emb|CAQ60142.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] Length = 172 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 85/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA I I DVV++TE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144 >gi|83746141|ref|ZP_00943195.1| AAU3 protein precursor [Ralstonia solanacearum UW551] gi|83727107|gb|EAP74231.1| AAU3 protein precursor [Ralstonia solanacearum UW551] Length = 189 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 85/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 18 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 77 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA I I DVV++TE F + ECF C + CGL VL AL A+F+ Sbjct: 78 AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 137 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 138 VLDTYTLQDLIDKPAALNRVLAEG 161 >gi|89096423|ref|ZP_01169316.1| YhdE [Bacillus sp. NRRL B-14911] gi|89089277|gb|EAR68385.1| YhdE [Bacillus sp. NRRL B-14911] Length = 158 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +DY IRVL+Y A H ND I +IAEA IS+ L KI+ L K G + TVRG Sbjct: 1 MRLTTYSDYSIRVLIYLASHQNDKLVNIKEIAEAYDISKNHLMKIIYNLGKMGYIRTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG +L + +I I ++V+ TEE F++ ECF HK C + C L +L AL +F Sbjct: 61 RNGGFKLAKLPAEINIGEIVRKTEEDFYLVECF-DHKNKCVITPVCSLKHILNHALESFL 119 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY++E +V N++ +K+ F Sbjct: 120 KVLDQYTLEDIVENKAMLKEYF 141 >gi|52079417|ref|YP_078208.1| hypothetical protein BL02858 [Bacillus licheniformis ATCC 14580] gi|52784777|ref|YP_090606.1| YhdE [Bacillus licheniformis ATCC 14580] gi|319646802|ref|ZP_08001031.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2] gi|81386129|sp|Q65M01|NSRR_BACLD RecName: Full=HTH-type transcriptional regulator nsrR gi|52002628|gb|AAU22570.1| conserved hypothetical protein YhdE [Bacillus licheniformis ATCC 14580] gi|52347279|gb|AAU39913.1| YhdE [Bacillus licheniformis ATCC 14580] gi|317391390|gb|EFV72188.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2] Length = 143 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A N I IA++ IS+ L K++ L K G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + + I I +V++ TE+ F + ECF K C L CGL VL KAL+A+ Sbjct: 61 RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 DVL QY+++ ++ N+ I+K+ Sbjct: 121 DVLDQYTLQDIIMNQDHIRKLL 142 >gi|295702551|ref|YP_003595626.1| nitric oxide sensitive transcriptional regulator [Bacillus megaterium DSM 319] gi|294800210|gb|ADF37276.1| transcriptional regulator, nitric oxide sensitive [Bacillus megaterium DSM 319] Length = 149 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 85/138 (61%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +RVL+Y + N+ + I +IAEA IS+ L KI+ L K G++ET+RG Sbjct: 1 MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I VV+ TEE F + ECF C + C L +VL +A+ AF Sbjct: 61 RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDREGNFCVISPVCKLKNVLHEAMQAFI 120 Query: 120 DVLTQYSIECLVRNRSSI 137 VL QY++E L++N+ + Sbjct: 121 KVLDQYTLEDLIQNKDEL 138 >gi|294497180|ref|YP_003560880.1| nitric oxide sensitive transcriptional regulator [Bacillus megaterium QM B1551] gi|294347117|gb|ADE67446.1| transcriptional regulator, nitric oxide sensitive [Bacillus megaterium QM B1551] Length = 149 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +RVL+Y + N+ + I +IAEA IS+ L KI+ L K G++ET+RG Sbjct: 1 MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I VV+ TEE F + ECF C + C L SVL +A+ AF Sbjct: 61 RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDCEGNFCIISPVCKLKSVLHEAMQAFI 120 Query: 120 DVLTQYSIECLVRNRSSI 137 VL QY++E L++N+ + Sbjct: 121 KVLDQYTLEDLIQNKDEL 138 >gi|295401854|ref|ZP_06811818.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312111004|ref|YP_003989320.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294976108|gb|EFG51722.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311216105|gb|ADP74709.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 156 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ A+ I +I++ ISE L KI+ L K G +ET+RG Sbjct: 1 MQLTNYTEYALRVLLFLGALEPGEKTNIKEISQTFSISENHLSKIVYELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I I VV+ TEE+ + ECFASH C L C L SVL +AL AF Sbjct: 61 RNGGIRLAKQPEEINIGAVVRKTEENLSLVECFASHGNHCVLTPVCQLKSVLHEALEAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L+ N+ S++ IF+ Sbjct: 121 RVLDAYALSDLLANKQSLQAIFS 143 >gi|241664864|ref|YP_002983224.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12D] gi|309780331|ref|ZP_07675082.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA] gi|240866891|gb|ACS64552.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12D] gi|308921034|gb|EFP66680.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA] Length = 159 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 84/139 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I +IA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I + DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL Y+++ LV +++ + Sbjct: 121 VLDGYTLQDLVDKPNAVSR 139 >gi|298291178|ref|YP_003693117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296927689|gb|ADH88498.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 146 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RV+++ H+D I +IA +S L K++Q L AG VETVRGR Sbjct: 1 MKLTRYTDYAMRVMIHLGTHDDRLASIPEIARIYDLSHSNLMKVVQDLGHAGYVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPADQI + ++V+ TE F + +C C + +CGL +L +A AF Sbjct: 61 HGGVRLARPADQINLGELVRHTEAGFDLVDCQG-----CLIAPACGLPGILAEATRAFLS 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++ L+ RS+++++F Sbjct: 116 VLDKYTVADLLGRRSALRQLF 136 >gi|148554707|ref|YP_001262289.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499897|gb|ABQ68151.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 147 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL++ AI++D I +I+ +S L K++ L + G +ETVRGR Sbjct: 1 MRLTRYTDYSLRVLIHLAINDDRLCSIGEISRTYDVSHNHLMKVVNALSRDGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA++IT+ +VV+ TEE F +A+C C L CGLT VL +A+ A Sbjct: 61 TGGMRLARPANEITVGEVVRRTEEGFQLADCSG-----CALSPVCGLTGVLAEAMQAMMT 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 V Y + L+ +R +++++ N Sbjct: 116 VFDSYKVSDLLTDREAMRRLMN 137 >gi|187930672|ref|YP_001901159.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12J] gi|187727562|gb|ACD28727.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12J] Length = 159 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/139 (42%), Positives = 83/139 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I +IA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I + DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL Y+++ L +++ + Sbjct: 121 VLDGYTLQDLADKPNAVSR 139 >gi|302879674|ref|YP_003848238.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302582463|gb|ADL56474.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 161 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 87/139 (62%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +D G+R+LMY A+ I + ++ IS+ L KI L K G++ ++RGR Sbjct: 1 MKLTQYSDLGLRLLMYLALREGESVTIQEASDRFAISKNHLVKISHQLTKQGLIVSIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RP ++I + +V++ATEE+F + ECF + + C + G C L++VL AL AFF Sbjct: 61 NGGVRLARPPERINVEEVLRATEENFDLVECFNAAQNRCVISGECKLSAVLDAALAAFFK 120 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL+ S+ LV N +I + Sbjct: 121 VLSATSLADLVTNSQAIDQ 139 >gi|114328337|ref|YP_745494.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] gi|114316511|gb|ABI62571.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] Length = 141 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ TDY IRV++Y +++ D +I++IA IS L K++Q LV AG+V +VRGR Sbjct: 1 MKFTRYTDYAIRVMIYLSVNQDRVVQIAEIARVYDISHNHLMKVVQGLVSAGLVSSVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPADQIT+ ++V+ TE+ F + EC DC C S+L +A AF Sbjct: 61 SGGLLLGRPADQITVGELVRRTEDGFHLVEC-----ADCAARPGCQAPSILAEATKAFLA 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ +VR++S FN Sbjct: 116 VLDRYTLSDVVRDKSIAHAAFN 137 >gi|298247883|ref|ZP_06971688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297550542|gb|EFH84408.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 152 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MHLT TDY +RVL+Y A + D I IA+ IS L KI+ L K G +ET+RG Sbjct: 1 MHLTYHTDYALRVLLYLAAYPDTQLANIQDIADTYTISSNHLMKIVHKLGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL R I I +VV+ TEE FF+ ECF S C + C L + L++AL AF Sbjct: 61 RNGGMRLARKPADIRIGEVVRQTEEDFFLVECFDSEHNCCVITPVCNLRTALQEALTAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 VL +Y++ L N++ +++ Sbjct: 121 SVLDKYTLADLTSNKALYQRL 141 >gi|329888279|ref|ZP_08266877.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] gi|328846835|gb|EGF96397.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] Length = 141 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 85/142 (59%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y D I++IA+A IS+ L K++ LV AG + +VRGR Sbjct: 1 MRLTRYTDYAMRVLLYLGARQDRLCSIAEIAQAYGISQNHLMKVVSDLVNAGYLVSVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RP DQI + VV+ TE+ F + +C + C + +CGLT L +AL AF Sbjct: 61 FGGVRLARPPDQINVGAVVRHTEDGFDLVDCGS-----CIIAPACGLTGALHQALAAFMK 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++E L+ R + +F Sbjct: 116 VLDGYTLEGLLSRRVDMAGLFE 137 >gi|167644820|ref|YP_001682483.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167347250|gb|ABZ69985.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 151 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL++ A +D I +IA IS+ L K++Q L KAG V TVRGR Sbjct: 1 MRLTRYTDYAMRVLLHLAARDDGLASIGEIAALYDISQNHLMKVVQDLGKAGFVRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L RPADQI + VV+ TEE F + +C C + +C L VL +A AF Sbjct: 61 GGGVALARPADQIVVGQVVRQTEEGFQLVDCS-----QCLIAPACTLPRVLNEATAAFIG 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++E L+ R ++ +F Sbjct: 116 VLEKYTLEDLLDRRHQMRALFG 137 >gi|260431455|ref|ZP_05785426.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260415283|gb|EEX08542.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 148 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 80/142 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D S+IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHPDRLVTKSEIAEVCNISENHLAQVINQLSQLGYLSTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPADQI I V + E +AECFA CPL +C L L+ A FF Sbjct: 61 NGGMELGRPADQIRIGSVFRHVEGDLPIAECFADADNTCPLTDACRLRLALQDAAEVFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L + +++ LV + + KI Sbjct: 121 SLDEITLDALVCDNDPLLKILQ 142 >gi|159044209|ref|YP_001533003.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911969|gb|ABV93402.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 150 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 82/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LMYCA+H R S++A+A SE L +++ L + G +ETVRGR Sbjct: 1 MRLTTRTNLAMRTLMYCAVHTGRNIRTSEVAKATNASENHLGQVINMLGQTGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A IT+ V + E AECF + + CPL+ C L L +AL AF+ Sbjct: 61 GGGIRLARNAQDITVGGVFRVFEAGTPFAECFDAKECTCPLISVCRLKGALGEALMAFYR 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++E LV++ + +K + Sbjct: 121 SLDAITLESLVKDNTGLKDLLG 142 >gi|149203563|ref|ZP_01880532.1| rrf2 family protein [Roseovarius sp. TM1035] gi|149142680|gb|EDM30722.1| rrf2 family protein [Roseovarius sp. TM1035] Length = 150 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 86/142 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IR+LM+CA ++D ++IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAIRLLMFCAANSDRLVTKAEIAERCNISESHLAQVINRLSQLGFLYTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RP QIT+ DV + E+ VAECFA CPL +C L L A+ AF+ Sbjct: 61 TGGVRLGRPMSQITVGDVFRQLEQHTPVAECFADVDNTCPLTKACRLRVALVDAVEAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L + +++ LV N ++ IF+ Sbjct: 121 HLDEVTLDALVCNNDALFAIFS 142 >gi|254467326|ref|ZP_05080737.1| Rrf2 family protein [Rhodobacterales bacterium Y4I] gi|206688234|gb|EDZ48716.1| Rrf2 family protein [Rhodobacterales bacterium Y4I] Length = 149 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 80/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D ++IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHEDRLVTKAEIAECCNISENHLAQVINQLSQLGYLTTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DV + E + + ECFA CPL G+C L L A AF+ Sbjct: 61 NGGMNLGRPAAEIRIGDVFRDVEGNLPMVECFADADNTCPLAGACRLKVALADAAQAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L S+E LV + + +I Sbjct: 121 SLDDISLEALVCDNHDLLRIL 141 >gi|138895291|ref|YP_001125744.1| hypothetical protein GTNG_1635 [Geobacillus thermodenitrificans NG80-2] gi|196250928|ref|ZP_03149612.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] gi|134266804|gb|ABO66999.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196209569|gb|EDY04344.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] Length = 148 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ ++ I +I+ +SE L KI+ L K G +ET+RG Sbjct: 1 MQLTSYTEYALRVLLFLGTLDEGEKTNIKEISTIFSLSEHHLSKIVHELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I + VV+ TE++ + ECFASH +C L +C L VLR+AL AF Sbjct: 61 RNGGIRLAKRPEEIIVGAVVRETEDNLSLVECFASHGNECILTPACRLRFVLREALEAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ L+ NR+S++ + Sbjct: 121 RVLDTYTLADLLENRTSLRALL 142 >gi|239827060|ref|YP_002949684.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. WCH70] gi|239807353|gb|ACS24418.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70] Length = 147 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ + + I +I++ ISE L KI+ L K G +ET+RG Sbjct: 1 MQLTNYTEYALRVLLFLGTLDPEEKTNIKEISKTFSISENHLSKIVYELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL R ++I I VV+ TEE+ + ECFA H C L C L VL +AL +F Sbjct: 61 RNGGIRLARKPEEIRIGSVVRNTEENLSLVECFAGHGNHCVLTPVCQLKRVLHEALGSFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ L+ N+ ++ IF Sbjct: 121 QVLDSYTLADLLSNKQHLQMIF 142 >gi|311695841|gb|ADP98714.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15] Length = 145 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 86/134 (64%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A+ D I +IA++ IS+ L K++ L K G +ET+RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAVQGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL R I+I +V+ TE+ + ECF+S K C + CGL S+ +AL AF + Sbjct: 61 KGGMRLHRSPSDISIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119 Query: 121 VLTQYSIECLVRNR 134 VL +Y++ +++ + Sbjct: 120 VLDKYTLADVIQEQ 133 >gi|56477058|ref|YP_158647.1| transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56313101|emb|CAI07746.1| predicted transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 153 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/138 (41%), Positives = 80/138 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L++ +H + I QIA+ IS+ L KI+ L G+VET RGR Sbjct: 1 MKLTDYTDYTLRTLIFLGLHRNEQVTIQQIADGYDISKNHLMKIIHRLSLDGLVETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +P D+I I VV+A E+ F + ECF+ C L C L + R AL AFF Sbjct: 61 SGGVRLRKPPDEINIGQVVRAAEQEFALVECFSRVNNRCVLSPVCELQATFRDALEAFFA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL + ++ ++RN ++ Sbjct: 121 VLDKRTLADILRNAEEVR 138 >gi|294677259|ref|YP_003577874.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294476079|gb|ADE85467.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus SB 1003] Length = 168 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 80/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CA++ D R +IAEAC SE L +++ L + G +ET RGR Sbjct: 1 MRLTTRTNLAMRTLMFCAVNGDRIVRKHEIAEACNASENHLAQVVNTLAQRGFIETQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP DQI + +V++ E EC CPL +C + AL AF+ Sbjct: 61 SGGLRLARPMDQIGVGEVLRTFEAVLPFVECLDGDNNTCPLCDACRFRDAIEAALEAFYT 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 + ++S+ LVR+ +++ + Sbjct: 121 AMDRHSVGDLVRDNDALEHLL 141 >gi|298290421|ref|YP_003692360.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296926932|gb|ADH87741.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 151 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +RV++Y A D P IS++A A IS+ L K++ L +AG V + RGR Sbjct: 1 MRLTRYSDYAMRVMLYLAARGDRPCSISEMAAAYGISQNHLMKVMNDLGRAGYVASTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA++I + D+++ TE+ + +C C L CGL+SVL +AL AF Sbjct: 61 NGGFRLARPANEIVVGDLLRHTEDDLDLVDCPR-----CVLSRGCGLSSVLDEALMAFLA 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++ L+ R + + Sbjct: 116 VLDRYTLADLIDRRQGFQSLL 136 >gi|241765268|ref|ZP_04763249.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] gi|241365059|gb|EER59951.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] Length = 162 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/133 (45%), Positives = 79/133 (59%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA P IS++AE+ IS L KI+Q L G++ET R Sbjct: 1 MRLTQWTDYTLRVLMYCAASEGRVQPVTISEVAESYGISRSHLTKIVQELSAQGLLETTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA I I VV+ATE F + ECF + C L C L VL +A+ AF Sbjct: 61 GRGGGMRLMKPAGDINIGAVVRATETDFNLVECFDAEHNQCRLSAHCYLKGVLGQAMQAF 120 Query: 119 FDVLTQYSIECLV 131 VL + ++ L+ Sbjct: 121 IAVLDKVTLADLL 133 >gi|197106638|ref|YP_002132015.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196480058|gb|ACG79586.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 148 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+ +RVLMY A+H D I++IA IS+ L K++ L +AG +ETVRG+ Sbjct: 1 MRLTGYTDFALRVLMYIAVHPDRRPTIAEIAAGYGISKNHLMKVVFDLGRAGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA+ I + ++V+ TE +A C C + +C L VL +A AF D Sbjct: 61 NGGLRLARPAESIGVGELVRRTEGDMALAPCLGRAD-GCVITPACRLKGVLVEARTAFMD 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y+I L R S++ + Sbjct: 120 VLDRYTIADLARQPESLRALLG 141 >gi|56420273|ref|YP_147591.1| hypothetical protein GK1738 [Geobacillus kaustophilus HTA426] gi|261419938|ref|YP_003253620.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC61] gi|297530100|ref|YP_003671375.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. C56-T3] gi|319766752|ref|YP_004132253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC52] gi|81347283|sp|Q5KZ63|NSRR_GEOKA RecName: Full=HTH-type transcriptional regulator nsrR gi|56380115|dbj|BAD76023.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261376395|gb|ACX79138.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC61] gi|297253352|gb|ADI26798.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. C56-T3] gi|317111618|gb|ADU94110.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC52] Length = 147 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ A+ + I IA A ISE L KI+ L K G +ET+RG Sbjct: 1 MQLTNYTEYALRVLLFLGALDEEEKTNIKDIAAAFSISEHHLSKIVYELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + +I I VV+ TEE+ + ECFA+H +C L C L L +AL AF Sbjct: 61 RNGGIRLAKRPAEIVIGAVVRETEENLSLVECFAAHGNECVLTPVCRLRFALHEALEAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L+ +R+S++ + Sbjct: 121 RVLDAYTLADLLEDRASLRSLLK 143 >gi|319763901|ref|YP_004127838.1| transcriptional regulator, rrf2 family [Alicycliphilus denitrificans BC] gi|330823835|ref|YP_004387138.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118462|gb|ADV00951.1| transcriptional regulator, Rrf2 family [Alicycliphilus denitrificans BC] gi|329309207|gb|AEB83622.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus denitrificans K601] Length = 163 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYALRVLMYCAASQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA +I + +V+ TE F + ECF + C + C L SVL A A+ Sbjct: 61 GRGGGMRLMKPAHEINLGAIVRMTETDFDMVECFNAELNQCRMSSHCRLQSVLSNATRAY 120 Query: 119 FDVLTQYSIECLV 131 VL S+ LV Sbjct: 121 LAVLDGLSVADLV 133 >gi|90019750|ref|YP_525577.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus degradans 2-40] gi|89949350|gb|ABD79365.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus degradans 2-40] Length = 146 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVLMY + + I +IA++ IS+ L K++Q L G ++ +RG+ Sbjct: 1 MHITRFTDYSLRVLMYAGLRDGELCTIQEIADSYNISKNHLMKVVQELNIKGYLKAIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA++I + +V+ TE+ F + ECF S C + +C L S+L +ALNAF Sbjct: 61 NGGLTLGRPANEINLGSLVRDTEQDFNIVECF-SEADTCTITPNCKLKSILAQALNAFLG 119 Query: 121 VLTQYSIECLVRNRS 135 VL Y++E L+ R+ Sbjct: 120 VLDDYTLEDLLAPRT 134 >gi|121999179|ref|YP_001003966.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121590584|gb|ABM63164.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 152 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 83/142 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +RVL++ I IAE IS L K++ L G VETVRG+ Sbjct: 1 MRLTRHSDYALRVLLFLGAAQGELVTIGAIAERFEISRNHLMKVVNRLAAHGFVETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL +P + I + ++++ TEE F + ECF C + G+C + +VL +AL+AF Sbjct: 61 RGGIRLAQPPETIPLGELLRRTEEDFTLVECFREEDQRCRIEGTCAVRAVLDEALHAFLA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ L+ NR ++ N Sbjct: 121 VLDRYTLADLLHNRGALAVDLN 142 >gi|121595468|ref|YP_987364.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|120607548|gb|ABM43288.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] Length = 166 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA +I + +V+ TE F + ECF + C + C L +VL A A+ Sbjct: 61 GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120 Query: 119 FDVLTQYSIECLV 131 VL +++ LV Sbjct: 121 LAVLDSFTVADLV 133 >gi|157691675|ref|YP_001486137.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680433|gb|ABV61577.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 143 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+ +RVL+Y A N+ + I QIA+ IS+ L K++ L K G VET+RG Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYDISKNHLTKVIYHLGKRGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + + I I +VV+ TE+ + ECF K C + C L VL +AL+A+ Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALSAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY+++ L +N+ +++++ Sbjct: 121 RVLDQYTLKDLTQNKDALRELL 142 >gi|182678939|ref|YP_001833085.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634822|gb|ACB95596.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 150 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 5/147 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA-GIVETVRG 59 M LT TDY +R L++ +H + I +IA+A ISE L K++Q L + G +ET RG Sbjct: 1 MRLTLHTDYALRTLIFLGLHQERRVSIHEIADAYGISENHLMKVIQKLGRPDGFIETTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117 R GG+RL R D+I + DVV+ TEE + CF K C L G CGL S+L +AL A Sbjct: 61 RGGGLRLARAPDKIRLDDVVRYTEEDMAIVACFQQAKDHEACVLTGYCGLQSILGEALAA 120 Query: 118 FFDVLTQYSIECLVR--NRSSIKKIFN 142 F VL +Y++ L+ +R+ I ++ Sbjct: 121 FLAVLQRYTLADLLSSPDRAQIMRLLT 147 >gi|92118952|ref|YP_578681.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801846|gb|ABE64221.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter hamburgensis X14] Length = 150 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 82/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A+ +D + I++IA + ISE L K++ L AG +ETVRGR Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDISEAHLMKVVHQLGVAGYIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P + I++ +V++ TE + CF C + SC L L +A AF + Sbjct: 61 GGGLRLAKPVEAISLAEVIRTTEPDMAIVTCFKPVNAPCMINPSCVLKRALERAREAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ LV R+ + + Sbjct: 121 VLEGYTLADLVAPRARLASLLG 142 >gi|222111682|ref|YP_002553946.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY] gi|221731126|gb|ACM33946.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus TPSY] Length = 166 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA +I + +V+ TE F + ECF + C + C L +VL A A+ Sbjct: 61 GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120 Query: 119 FDVLTQYSIECLV 131 VL ++ LV Sbjct: 121 LAVLDSLTVADLV 133 >gi|330993730|ref|ZP_08317664.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329759304|gb|EGG75814.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 151 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y IH D I ++A+A ISE L KI+ L + G +ET+RGR Sbjct: 1 MRLTLHTDYALRTLLYLGIHTDRLTSIREVAQAYGISENHLVKIIHRLGQGGFIETIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP------LVGSCGLTSVLRKA 114 GG+RL RPA I I DVV+ TEE + C + P L +C L VL +A Sbjct: 61 NGGLRLGRPAASILIGDVVRYTEEDMALVNCMQPADPERPDMKPCILADACRLRGVLGEA 120 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 L +F VL +Y++ ++ +R Sbjct: 121 LGSFIAVLDRYTLADVITDRE 141 >gi|194014188|ref|ZP_03052805.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC 7061] gi|194013214|gb|EDW22779.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC 7061] Length = 143 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+ +RVL+Y A N+ + I QIA+ IS+ L K++ L K G VET+RG Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYGISKNHLTKVIYHLGKRGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + + I I +VV+ TE+ + ECF K C + C L VL +AL A+ Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALTAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y+++ L +N+ +++++ Sbjct: 121 RVLDKYTLKDLTQNKDALRELL 142 >gi|90418251|ref|ZP_01226163.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90337923|gb|EAS51574.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 151 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RV++Y A D + ++ I+EA IS L K++ L KAG V T+RGR Sbjct: 1 MRLTRYTDYALRVVIYLAARPDGLSSVADISEAYGISRNHLTKVVHELGKAGYVTTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA QI + ++V+ TE+ F +A+C C + +CG++ VL +A+ AF Sbjct: 61 SGGIRLARPASQIFVGELVRTTEDGFDLADCN-----RCIIQPACGMSGVLAEAVTAFLA 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +YS L + I +F Sbjct: 116 VLDRYSFADLPKREIDILSLF 136 >gi|163736848|ref|ZP_02144266.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] gi|161389452|gb|EDQ13803.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] Length = 154 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 81/141 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D S+IA C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA +I I DV + E + + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++E L+ + ++ +F Sbjct: 121 SLDGITLEALICDNDALFALF 141 >gi|149376004|ref|ZP_01893770.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893] gi|149359641|gb|EDM48099.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893] Length = 145 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 83/134 (61%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A+ D I QIA++ IS L K++ L K G +ETVRG+ Sbjct: 1 MHITRYTDYSLRVLVYLAVQGDELATIQQIADSYEISRNHLMKVVHQLNKKGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL + I + +V+ TE+ V ECF+S C + CGL S+ +AL AF + Sbjct: 61 KGGMRLHMAPEDINVGILVRETEQDLSVVECFSSGDA-CRITPVCGLKSMFGEALAAFLE 119 Query: 121 VLTQYSIECLVRNR 134 VL +Y++ ++ ++ Sbjct: 120 VLDRYTLADIIHDQ 133 >gi|323489216|ref|ZP_08094448.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323397103|gb|EGA89917.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 144 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+ +RVL+Y D I +I+EA IS+ L K+ L KAG ++TVRG Sbjct: 1 MRLTMYTDFSLRVLIYLGTKKPDKLTTIQEISEAYNISKNHLTKVTFELGKAGFIQTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL I + VV+ E+ F + ECF CP+ CGL VL KAL+A+ Sbjct: 61 RGGGIRLADLPQNINVGTVVRKMEDDFHLVECFDPATNRCPISPVCGLRGVLGKALHAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 VL +Y++E L+ N+ +++I Sbjct: 121 TVLDEYTLEDLLFNKEGLREILKT 144 >gi|163743993|ref|ZP_02151362.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10] gi|161382753|gb|EDQ07153.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10] Length = 154 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 81/141 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D S+IA C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA +I I DV + E + + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++E L+ + ++ +F Sbjct: 121 SLDGITLEALICDNDALFALF 141 >gi|23097747|ref|NP_691213.1| hypothetical protein OB0292 [Oceanobacillus iheyensis HTE831] gi|81747143|sp|Q8ETG9|NSRR_OCEIH RecName: Full=HTH-type transcriptional regulator nsrR gi|22775971|dbj|BAC12248.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 147 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+L K TDY +RVL++ + +D I +IAE IS+ L K++ L K +V T+RG Sbjct: 1 MNLKKYTDYALRVLIFTGLKSDQELANIKEIAEVYQISQEHLRKVVHELTKMELVVTIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L +PA +I I +++ E F + ECF C + C L V+ KAL AFF Sbjct: 61 RNGGIKLAKPASEINIGLLIRQLENDFVLLECFDKGTNHCVISPGCTLKHVINKALVAFF 120 Query: 120 DVLTQYSIECLVRNRSSI 137 VL +Y++E L++N + Sbjct: 121 KVLEEYTLEDLIKNEEEL 138 >gi|146277178|ref|YP_001167337.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555419|gb|ABP70032.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 144 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 82/141 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CAI+ R +++A AC SE L +++ L + G + TVRGR Sbjct: 1 MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA+ I + DV + E + ECF+ + CPL SC L L AL+AF+ Sbjct: 61 CGGLALGRPAENIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALSAFYG 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L + S+ +V+ + ++++ Sbjct: 121 SLDKLSLRDMVQENTELEELL 141 >gi|167563455|ref|ZP_02356371.1| Rrf2 family protein [Burkholderia oklahomensis EO147] gi|167570625|ref|ZP_02363499.1| Rrf2 family protein [Burkholderia oklahomensis C6786] Length = 161 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/131 (42%), Positives = 77/131 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHNVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P +I I DV++A+E F + ECF H C L C L +L AL A+F Sbjct: 61 GGGVRLALPPGRIGIGDVIRASETDFRLVECFDRHTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|77463446|ref|YP_352950.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462302|ref|YP_001043416.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639304|ref|YP_002525566.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558324|ref|ZP_08412646.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] gi|77387864|gb|ABA79049.1| transcriptional regulator / transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126103966|gb|ABN76644.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|221160085|gb|ACM01065.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] gi|332276036|gb|EGJ21351.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] Length = 144 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 81/141 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CAI+ R +++A AC SE L +++ L + G + TVRGR Sbjct: 1 MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA++I + DV + E + ECF+ + CPL SC L L AL AF+ Sbjct: 61 CGGLALGRPAEKIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALAAFYG 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L + S+ +V+ + ++ + Sbjct: 121 TLDKLSLRDMVQENTELEDLL 141 >gi|260429411|ref|ZP_05783388.1| putative transcriptional regulator [Citreicella sp. SE45] gi|260420034|gb|EEX13287.1| putative transcriptional regulator [Citreicella sp. SE45] Length = 159 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 80/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IRVLM+CA ++ ++IA C SE L +++ L + G + T RGR Sbjct: 1 MRVTKRTNIAIRVLMHCAANSGRLVTKAEIARRCNASENHLAQVINQLAQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPADQI I DV +A E +AECFA CPL +C L L A +AF+ Sbjct: 61 HGGLELGRPADQIRIGDVFRALEAPVPLAECFADVDNTCPLTNACRLKIALTDAASAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L S++ LV + + + I Sbjct: 121 TLDPISLDTLVCDNAPLMDIL 141 >gi|120555981|ref|YP_960332.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325830|gb|ABM20145.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei VT8] Length = 145 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 83/133 (62%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A D I +IA++ IS+ L K++ L K G +ET+RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAAEGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL I I +V+ TE+ + ECF+S K C + CGL S+ +AL AF + Sbjct: 61 KGGMRLHMAPQDINIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119 Query: 121 VLTQYSIECLVRN 133 VL +Y++ ++++ Sbjct: 120 VLDRYTLADVIQD 132 >gi|85714888|ref|ZP_01045874.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A] gi|85698374|gb|EAQ36245.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A] Length = 150 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 80/142 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A+ +D + I++IA + +SE L K++ L AG +ETVRGR Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDVSEAHLMKVVHQLGVAGYIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA+ I + +V++ TE + C C + SC L L +A AF + Sbjct: 61 GGGLRLAKPAEAIRLAEVIRTTEPDMAIVSCLKPLNAPCMINPSCVLKRALERAQQAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L R+ + + Sbjct: 121 VLEGYTLADLTAPRARLSSLLG 142 >gi|108758209|ref|YP_635032.1| Rrf2 family protein [Myxococcus xanthus DK 1622] gi|108462089|gb|ABF87274.1| Rrf2 family protein [Myxococcus xanthus DK 1622] Length = 148 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT DY +RVL+Y A P ++A+A IS+ L +++Q L G+V+ GR Sbjct: 1 MHLTLHADYSLRVLLYLATRTGRPVSTQEMADAYGISKHHLVRVVQTLAGQGVVDARAGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L R I + V++A E F + ECF + CP+ +CGL VL +A AF Sbjct: 61 SGGVVLARAPADIQVGSVLRAAEPDFHLVECFDRERNACPIAPACGLKGVLDEAREAFLA 120 Query: 121 VLTQYSI-ECLVRNRSSIKKIF 141 VL +Y++ + L R+R +++ F Sbjct: 121 VLDRYTLADLLRRSRPNLQDYF 142 >gi|88706864|ref|ZP_01104564.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71] gi|88698914|gb|EAQ96033.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71] Length = 147 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 80/139 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT ++Y +R+LMYCA+H RI +A A IS+ L K + L + G + TVRGR Sbjct: 1 MRLTAYSNYSMRILMYCAMHPGQLVRIQDVATAFDISKAHLLKAARHLGQLGYLSTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L A++I I V++A E+S ECF S CP+ G+C LT + R+ L AF+ Sbjct: 61 SGGIQLGMAAERIDIGAVIRAVEDSGEFVECFNSSTNSCPIAGTCKLTGLFRRGLEAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKK 139 L ++ LV + ++ Sbjct: 121 ELDGVTLADLVGTGTELRS 139 >gi|259416348|ref|ZP_05740268.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B] gi|259347787|gb|EEW59564.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B] Length = 155 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA++ S+IA+ C ISE L +++ L + G ++T RGR Sbjct: 1 MRITKRTNIAVRLLMYCALNEGRLVTKSEIAQRCNISENHLAQVVNQLSQLGFLKTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R AD+I I DV + E + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGLNLSRSADEICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALSRAGEAFYS 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++E L + +++I Sbjct: 121 ALDGVTLESLTCDNFDLQRIL 141 >gi|167837274|ref|ZP_02464157.1| Rrf2 family protein [Burkholderia thailandensis MSMB43] Length = 161 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 77/131 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCAANPDRLITIAELAERHAVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P +I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLAMPPARIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|311031562|ref|ZP_07709652.1| nitric oxide sensitive transcriptional regulator [Bacillus sp. m3-13] Length = 158 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMY--CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT TDY +RVL+Y A N+ +I +IAEA IS+ L K+ L K G VET+R Sbjct: 1 MKLTLYTDYSLRVLLYLASAPENNKLIQIKEIAEAYGISKNHLMKVTFHLGKLGYVETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L + ++ I ++V+ TEE F + ECF H C + C L VL +A AF Sbjct: 61 GRNGGLLLAKEPKELNIGELVRQTEEDFHIVECFQDH-ASCVISPHCKLKGVLYQATQAF 119 Query: 119 FDVLTQYSIECLVRNRSSI 137 VL QY++ L+ N+ + Sbjct: 120 ISVLDQYTLADLITNKEQL 138 >gi|162146319|ref|YP_001600778.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209543678|ref|YP_002275907.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161784894|emb|CAP54437.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531355|gb|ACI51292.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 146 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y D I +IA+A ISE L KI+ L + G +ETVRGR Sbjct: 1 MRLTLHTDYALRTLIYLGTRTDRLVSIHEIAQAYGISENHLMKIIHRLGRGGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP------LVGSCGLTSVLRKA 114 GG+RL R AD I I DVV+ TEE + C P L +C L VL +A Sbjct: 61 GGGLRLARAADAIRIGDVVRYTEEDMALVGCMQGDDPSAPDARPCVLADACRLKGVLGEA 120 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 L AF VL +Y++ ++ R+ Sbjct: 121 LGAFTAVLDRYTLADMITERT 141 >gi|53725252|ref|YP_102394.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|52428675|gb|AAU49268.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] Length = 165 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 4 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 64 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 124 ELDGATLADLV 134 >gi|124385754|ref|YP_001028829.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126450911|ref|YP_001081260.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|254357765|ref|ZP_04974038.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|124293774|gb|ABN03043.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126243781|gb|ABO06874.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|148026892|gb|EDK84913.1| putative transcriptional regulator [Burkholderia mallei 2002721280] Length = 162 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLTDLV 131 >gi|67641803|ref|ZP_00440570.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|121599140|ref|YP_993712.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|167001110|ref|ZP_02266911.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|167895170|ref|ZP_02482572.1| Rrf2 family protein [Burkholderia pseudomallei 7894] gi|167919806|ref|ZP_02506897.1| Rrf2 family protein [Burkholderia pseudomallei BCC215] gi|254178664|ref|ZP_04885319.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|254199293|ref|ZP_04905659.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|254205604|ref|ZP_04911956.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|254296933|ref|ZP_04964386.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|121227950|gb|ABM50468.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|147748889|gb|EDK55963.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|147753047|gb|EDK60112.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|157807290|gb|EDO84460.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|160699703|gb|EDP89673.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|238522791|gb|EEP86233.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|243063060|gb|EES45246.1| putative transcriptional regulator [Burkholderia mallei PRL-20] Length = 162 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|53719983|ref|YP_108969.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|76809787|ref|YP_334214.1| Rrf2 family protein [Burkholderia pseudomallei 1710b] gi|126442125|ref|YP_001059734.1| putative transcriptional regulator [Burkholderia pseudomallei 668] gi|126454292|ref|YP_001067019.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134277895|ref|ZP_01764610.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|167720485|ref|ZP_02403721.1| putative transcriptional regulator [Burkholderia pseudomallei DM98] gi|167739474|ref|ZP_02412248.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167816678|ref|ZP_02448358.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167846586|ref|ZP_02472094.1| putative transcriptional regulator [Burkholderia pseudomallei B7210] gi|167903554|ref|ZP_02490759.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC 13177] gi|167911804|ref|ZP_02498895.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|237813128|ref|YP_002897579.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|242315306|ref|ZP_04814322.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254184271|ref|ZP_04890861.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|254191305|ref|ZP_04897809.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|254195724|ref|ZP_04902150.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|254261403|ref|ZP_04952457.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] gi|52210397|emb|CAH36378.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|76579240|gb|ABA48715.1| Rrf2 family protein [Burkholderia pseudomallei 1710b] gi|126221618|gb|ABN85124.1| putative transcriptional regulator [Burkholderia pseudomallei 668] gi|126227934|gb|ABN91474.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134251545|gb|EBA51624.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|157938977|gb|EDO94647.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|169652469|gb|EDS85162.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|184214802|gb|EDU11845.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|237506106|gb|ACQ98424.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|242138545|gb|EES24947.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254220092|gb|EET09476.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] Length = 162 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|167825083|ref|ZP_02456554.1| putative transcriptional regulator [Burkholderia pseudomallei 9] gi|217420382|ref|ZP_03451887.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|226199936|ref|ZP_03795486.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] gi|217395794|gb|EEC35811.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|225927992|gb|EEH24029.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] Length = 162 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|254510320|ref|ZP_05122387.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11] gi|221534031|gb|EEE37019.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11] Length = 148 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 78/141 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +RVLMYCA H D ++IAE C ISE L +++ L + + T RGR Sbjct: 1 MRITKRTNIAVRVLMYCAAHPDRLVTKAEIAEVCNISENHLAQVINQLSQLDYLSTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R ADQI I V + E + +AECFA CPL +C L L+ A F+ Sbjct: 61 NGGTVLARAADQIRIGSVFRHVEGALPIAECFADADNTCPLTDACRLRLALQDAAEVFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L +++ L+ + ++ +I Sbjct: 121 SLDDITLDALICDNDNLLRIL 141 >gi|222150933|ref|YP_002560086.1| hypothetical protein MCCL_0683 [Macrococcus caseolyticus JCSC5402] gi|222120055|dbj|BAH17390.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 138 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A ++ +I +IA IS+ L K++ L G +ET RGR Sbjct: 1 MKLTLYSDYSLRVLMYIA-RQEHRVQIDEIANFYGISKNHLTKVVNNLATLGYIETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ ++I I +++ TEE F + ECF CP+ G CGL VL +AL A+ Sbjct: 60 GGGIRIKMAPEEINIGALIRKTEEHFNLVECFDRETNTCPIAGICGLQGVLSEALGAYLS 119 Query: 121 VLTQYSIECLVRNRSS 136 VL Y++ ++ N+ + Sbjct: 120 VLDSYTLNDILHNKRT 135 >gi|85714309|ref|ZP_01045297.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A] gi|85698756|gb|EAQ36625.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A] Length = 165 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT DY +R+LMY A H D I + A IS L K+ L +AG ++ VRGR Sbjct: 24 MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 83 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++I + DV+ ATE F + ECF+S+ CP+ SC L + LR+ALNAF Sbjct: 84 SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 142 Query: 121 VLTQYSIECLVRN 133 L +Y++ L+ N Sbjct: 143 TLDRYTLADLILN 155 >gi|332285364|ref|YP_004417275.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] gi|330429317|gb|AEC20651.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] Length = 151 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LMY H D I+++A+A ISE L KI L + G +ET+RG+ Sbjct: 1 MRLTTMTDYAMRLLMYVGRHPDRLCTIAEVAQAYGISEPHLMKITHRLAQRGWLETIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I + VV+ TE + ECF ++ C L G C LT+++ AL F Sbjct: 61 NGGMRLAHPPEEINLGAVVRDTENDLALVECFVANNA-CTLSGQCNLTAIIDGALQQFMQ 119 Query: 121 VLTQYSI 127 L +Y++ Sbjct: 120 HLDRYTL 126 >gi|94498334|ref|ZP_01304893.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58] gi|94422214|gb|EAT07256.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58] Length = 141 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y I+ IA A IS+ L K++ LV AG +E+VRGR Sbjct: 1 MRLTRYTDYAMRVLLYLGRQPGELASIAVIARAFAISQNHLMKVVNDLVNAGYLESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP +I + +V+ TE+ F + C A C + +CGLTSVL +AL AF Sbjct: 61 NGGIRLARPPHEINVGALVRQTEDDFDLVGCGA-----CVIAPACGLTSVLDEALLAFLK 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL YS+ ++ + + Sbjct: 116 VLDGYSLADVLARKGDFSHLL 136 >gi|167581217|ref|ZP_02374091.1| Rrf2 family protein [Burkholderia thailandensis TXDOH] gi|167619304|ref|ZP_02387935.1| Rrf2 family protein [Burkholderia thailandensis Bt4] gi|257138520|ref|ZP_05586782.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 161 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++++E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|83720448|ref|YP_442322.1| Rrf2 family protein [Burkholderia thailandensis E264] gi|83654273|gb|ABC38336.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 164 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 4 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++++E F + ECF + C L C L +L AL A+F Sbjct: 64 GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 124 ELDGATLADLV 134 >gi|254443774|ref|ZP_05057250.1| rrf2 family protein (putative transcriptional regulator) [Verrucomicrobiae bacterium DG1235] gi|198258082|gb|EDY82390.1| rrf2 family protein (putative transcriptional regulator) [Verrucomicrobiae bacterium DG1235] Length = 144 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 83/141 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TDY +R+L+Y ++ + +++IA+A IS+ L KI L + GIV RG+ Sbjct: 1 MELTKFTDYSLRMLLYLGLNEERLVSLTEIADAYSISKNHLVKISAHLSQNGIVAATRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + +I I VV++TE + ECF C + +C L SVL+KA AF+ Sbjct: 61 GGGIRLAKQPHEINIGTVVRSTEGHTPLVECFDPENNRCCITKNCTLKSVLKKAEKAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Q++++ L++NR + F Sbjct: 121 ELDQHTLQDLLKNRKGLAATF 141 >gi|56695347|ref|YP_165695.1| rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56677084|gb|AAV93750.1| rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 148 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 6/145 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M +TKRT+ +R+LM+CA H P R+ S+IAE C +SE L +++ L + G + T Sbjct: 1 MRITKRTNIAVRLLMFCAAH---PGRLVTKSEIAEVCNVSENHLAQVINQLSQLGFLTTQ 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG+ L AD I I +V + E + + ECFA CPL +C L LR A A Sbjct: 58 RGRNGGMCLGMAADAIRIGEVFRHVEGNLPMVECFADADNSCPLTDACRLRLALRDAAQA 117 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F+ L + +++ LV + + + KI N Sbjct: 118 FYASLDEITLDALVCDNTDLLKILN 142 >gi|212632981|ref|YP_002309506.1| hypothetical protein swp_0072 [Shewanella piezotolerans WP3] gi|212554465|gb|ACJ26919.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 149 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+H + + RIS+I + +S + K++ L K G ++TVR Sbjct: 1 MQLTRYTDFGLRTLMYLALHPERESLFRISEITDVFDLSANHISKVVHHLGKLGYLKTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L PA +I + DVV+A E S +C + C +C L VL +A+NA+ Sbjct: 61 GKSGGFKLAMPASEINVGDVVRALENSLSSIDCSKPY---CLFTPACKLKGVLAEAVNAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL Y++E +V N+ +K + Sbjct: 118 LAVLDGYTLEMIVTNKKELKSLL 140 >gi|75674940|ref|YP_317361.1| hypothetical protein Nwi_0743 [Nitrobacter winogradskyi Nb-255] gi|74419810|gb|ABA04009.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter winogradskyi Nb-255] Length = 150 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 75/131 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A+ +D + I++IA + +SE L K++ L AG +ETVRGR Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYNVSEAHLMKVVHQLGVAGYIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP + I + +V++ TE V C C + C L + +A AF D Sbjct: 61 GGGLRLARPVEAIGLAEVIRMTEPDMAVVSCLKPLNAPCKINPCCVLKRAMERAQQAFMD 120 Query: 121 VLTQYSIECLV 131 VL Y++ LV Sbjct: 121 VLEGYTLADLV 131 >gi|75676837|ref|YP_319258.1| hypothetical protein Nwi_2653 [Nitrobacter winogradskyi Nb-255] gi|74421707|gb|ABA05906.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter winogradskyi Nb-255] Length = 142 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT DY +R+LMY A H D I + A IS L K+ L +AG ++ VRGR Sbjct: 1 MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++I + DV+ ATE F + ECF+S+ CP+ SC L + LR+ALNAF Sbjct: 61 SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 119 Query: 121 VLTQYSIECLV 131 L +Y++ L+ Sbjct: 120 TLDRYTLADLI 130 >gi|225075994|ref|ZP_03719193.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens NRL30031/H210] gi|224952709|gb|EEG33918.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens NRL30031/H210] Length = 152 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/131 (42%), Positives = 82/131 (62%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNISTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I VV+ E V EC + +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGENN-ECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLV 131 L QYS++ L+ Sbjct: 119 HLDQYSLQDLL 129 >gi|121635429|ref|YP_975674.1| hypothetical protein NMC1725 [Neisseria meningitidis FAM18] gi|120867135|emb|CAM10902.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|254672733|emb|CBA06710.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|325198879|gb|ADY94335.1| transcriptional repressor nsrR [Neisseria meningitidis G2136] Length = 147 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E V EC S+ +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLATPPDRINIGSVVRHLEPMQLV-ECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 YLDGFTLQDLLN 130 >gi|304386705|ref|ZP_07368978.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091] gi|261391951|emb|CAX49413.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] gi|304339220|gb|EFM05301.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091] Length = 147 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E V EC S+ +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 YLDGFTLQDLLN 130 >gi|74318032|ref|YP_315772.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057527|gb|AAZ97967.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans ATCC 25259] Length = 156 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/139 (41%), Positives = 79/139 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R LMY A H D IS+IAE IS+ L K++ L +G+V+T+RGR Sbjct: 1 MRLTTYTDYALRTLMYLATHRDRLVTISEIAEVHGISKNHLMKVVYQLGLSGLVDTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R +IT+ +VV++TE F +AECF C +C L VL A A+ Sbjct: 61 NGGLRLKREPTEITVGEVVRSTETDFDMAECFDPSGDRCLYSPACVLKDVLSSATLAYLG 120 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL + ++ LV KK Sbjct: 121 VLDKVTLGDLVGGGRGRKK 139 >gi|326385353|ref|ZP_08206998.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326210159|gb|EGD60931.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 141 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +RV++Y H D I++IA A IS+ L K++ L G V+ +RGR Sbjct: 1 MRLTRFSDYAVRVIIYLGAHTDRLCSIAEIARAYDISQNHLMKVVSDLAAHGYVQALRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA +I I +++ TE + + C DC L G+C L L +ALNAFF Sbjct: 61 NGGIRLGRPAGEINIGKLIRHTEGTIDLVGCE-----DCKLAGACDLPDPLNEALNAFFA 115 Query: 121 VLTQYSI 127 VL +Y++ Sbjct: 116 VLERYTL 122 >gi|71908531|ref|YP_286118.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica RCB] gi|71848152|gb|AAZ47648.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas aromatica RCB] Length = 159 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +DY +RVLMY D I++IA A IS+ L K+ L + G +ETVRG+ Sbjct: 1 MRLSAFSDYSLRVLMYLGAQTDRLATIAEIAAAHDISKSHLMKVAYQLGRGGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +I + +V++ TE F +AECFA K C + G+C L ++L +AL A F Sbjct: 61 GGGLRLAHEPQEIVVGEVIRQTESDFTLAECFAD-KSTCRIQGACCLPAILNEALKAMFL 119 Query: 121 VLTQYSIECLVRN 133 VL Y++ L+R Sbjct: 120 VLDGYTLADLLRT 132 >gi|326403994|ref|YP_004284076.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050856|dbj|BAJ81194.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 150 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT TDYG+R L++ A+ D I++IA + IS+ L K++ L +AG+VET+RGR Sbjct: 1 MHLTMFTDYGLRTLIFLALRPDRQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA I + +V++A E + C + C + G C L +V+ +A +AF Sbjct: 61 HGGMRLARPAANIGLGEVIRAMEPGLALVACQEGGR--CAIGGCCDLQAVMNEARDAFLG 118 Query: 121 VLTQYSIECLV 131 V +Y++ +V Sbjct: 119 VFDRYTLADVV 129 >gi|124515741|gb|EAY57250.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] gi|206602245|gb|EDZ38727.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 77/141 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY IRVL+Y + D P IS++AE+ IS L K++ L ++G + T RG+ Sbjct: 1 MQLTLYSDYSIRVLLYLSAKTDGPATISEVAESYGISRNHLVKVVHNLSQSGYIRTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+ L R +I+I +++ TE F + EC CP+ C L +V R AL AF Sbjct: 61 KGGMVLGRDPKEISIGGLLRQTEPDFRLVECLQEESSGCPIDQVCSLKAVFRTALYAFLK 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ + N +K I Sbjct: 121 TLDGYTLADITGNVGLLKPIL 141 >gi|149915740|ref|ZP_01904265.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. AzwK-3b] gi|149810322|gb|EDM70167.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. AzwK-3b] Length = 150 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 80/144 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IRVLM+C + D S+IA C SE L +++ L + + T RGR Sbjct: 1 MRITKRTNIAIRVLMFCGANIDRLVTKSEIAARCNTSESHLAQVINRLAQLDFLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP D+I I DV + E + +AECFA CPLV +C L + A AF+ Sbjct: 61 SGGIALARPMDEIIIGDVFRQLESNVPIAECFADVDNTCPLVTACRLRHAIADAAEAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 L + +++ LV + ++ IF G Sbjct: 121 HLDKITLDVLVCDNVALLDIFMPG 144 >gi|157964032|ref|YP_001504066.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157849032|gb|ABV89531.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana ATCC 700345] Length = 149 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYG+R LMY A+H++ + RI++I E +S + K++ L K G ++TVR Sbjct: 1 MQLTRYTDYGLRTLMYLALHSERESLFRIAEITEVFDLSANHISKVVHHLGKLGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L +PA +I I VV+A E S +C K C +C L L A+NA+ Sbjct: 61 GKSGGFKLAKPASEINIGQVVRALENSLAPIDC---SKPYCLFTPACKLRGALADAVNAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL Y+++ +V N+ +K + Sbjct: 118 LAVLDGYTLDMIVTNKQELKSLL 140 >gi|292490559|ref|YP_003525998.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291579154|gb|ADE13611.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus Nc4] Length = 153 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 83/138 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y ++H++ IS+IA + IS L K++ L G ++T RG+ Sbjct: 1 MQLTQYTDYSLRVLIYLSLHDEQLATISEIASSYNISRNHLGKVVHNLANLGYIDTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + ++I + +V+ TE F VAECF + C + C L V +A AF Sbjct: 61 GGGMRLSQAPEKINLGRIVQQTEGRFDVAECFNTTHNTCSISSCCQLKDVFWEARCAFLA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +Y++ +++N++ ++ Sbjct: 121 VLNRYTLADVIKNKNELR 138 >gi|300115490|ref|YP_003762065.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299541427|gb|ADJ29744.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 153 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 82/138 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y ++N IS+IA++ IS L K++ L G ++T RG+ Sbjct: 1 MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + I I VV+ TE F +AECF + C + C L +V +A AF Sbjct: 61 GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCQLKNVFWEARCAFIA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +Y++ +V+N+S ++ Sbjct: 121 VLDRYTLADIVKNKSQLR 138 >gi|77166414|ref|YP_344939.1| hypothetical protein Noc_2967 [Nitrosococcus oceani ATCC 19707] gi|254435367|ref|ZP_05048874.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27] gi|76884728|gb|ABA59409.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207088478|gb|EDZ65750.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27] Length = 153 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 82/138 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y ++N IS+IA++ IS L K++ L G ++T RG+ Sbjct: 1 MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + I I VV+ TE F +AECF + C + C L +V +A AF Sbjct: 61 GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCELKNVFWEARCAFIA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +Y++ +V+N+S ++ Sbjct: 121 VLDRYTLADIVKNKSQLR 138 >gi|58039326|ref|YP_191290.1| CDG1D protein [Gluconobacter oxydans 621H] gi|58001740|gb|AAW60634.1| CDG1D protein [Gluconobacter oxydans 621H] Length = 149 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ +H + I +IA+A ISE L K++ L + G V TVRGR Sbjct: 1 MRLTLHTDYALRVLIHLGVHTSHRVSIREIAQAYRISENHLVKVVHRLGQGGFVTTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+ L RPA +I + VV+ TE+ + +C + D C L +C L VL AL A Sbjct: 61 GGGLELARPASEINVGAVVRFTEDDMTLVDCEGRNSTDGTPCVLSPACVLRGVLGDALGA 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 F VL +Y++ L+ R + Sbjct: 121 FLTVLDRYTLADLLTGREA 139 >gi|119384427|ref|YP_915483.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374194|gb|ABL69787.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 147 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y + I +IA+A IS+ L K++ LV AG + ++RGR Sbjct: 1 MRLTRYTDYAMRVLLYLGREPERLCPIGEIAQAYGISQNHLMKVINDLVNAGFLASLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP +I I +V+ TE+ F + C +C + +CGLTSVL +A+ F Sbjct: 61 NGGIRLARPPAEINIGALVRHTEDDFDLVGCG-----NCIIAPACGLTSVLDEAMAGFMA 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL YS+ ++ R + N Sbjct: 116 VLDGYSLADVLARRPDFSYLLN 137 >gi|149923899|ref|ZP_01912287.1| Rrf2 family protein [Plesiocystis pacifica SIR-1] gi|149815242|gb|EDM74789.1| Rrf2 family protein [Plesiocystis pacifica SIR-1] Length = 145 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 73/127 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TDY +RVL+Y A + +I+EA IS L K++ L +AG + RGR Sbjct: 1 MRLTKHTDYALRVLIYVAAADGRQVSTDEISEAYGISGHHLVKVVGTLGRAGFLAVKRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L R +++ + +V++ATE F + EC +CPL G+C L S L +A AF Sbjct: 61 GGGVTLARDPEELRLGEVLEATEPDFAMVECMQEGNTECPLTGACSLVSPLYEAQRAFIA 120 Query: 121 VLTQYSI 127 L QY++ Sbjct: 121 SLDQYTL 127 >gi|117918506|ref|YP_867698.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3] gi|117610838|gb|ABK46292.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3] Length = 151 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRKTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +++A E S +C + C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL QYS++ +V NR+ + Sbjct: 118 LNVLDQYSLQDIVSNRNEL 136 >gi|261379265|ref|ZP_05983838.1| transcriptional repressor NsrR [Neisseria subflava NJ9703] gi|284797696|gb|EFC53043.1| transcriptional repressor NsrR [Neisseria subflava NJ9703] Length = 152 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I I VV+ E V EC + +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADNPENINIGAVVRHL-EPMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLV 131 L QYS++ L+ Sbjct: 119 HLDQYSLQDLL 129 >gi|114045552|ref|YP_736102.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7] gi|113886994|gb|ABI41045.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7] Length = 151 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +++A E S +C + C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVQAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL QYS++ +V NR+ + Sbjct: 118 LNVLDQYSLQDIVSNRNEL 136 >gi|294788820|ref|ZP_06754061.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453] gi|294483302|gb|EFG30988.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453] Length = 152 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL++ AI++D I+ IA+A IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQQTDYALRVLIFAAINDDSLVNIATIADAYQISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA +I + VV+ E V ECF + C L C L +L + AF Sbjct: 61 GGGLRLARPAVEICVGAVVRHMEH-LTVVECFGENN-QCILTPCCRLMDILHGGMKAFLS 118 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L Y++ L+ NR + + ++ Sbjct: 119 HLDGYTLADLIGNRQAHELLYQ 140 >gi|296313550|ref|ZP_06863491.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768] gi|296839891|gb|EFH23829.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768] Length = 148 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E V EC + +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 YLDGFTLQDLLN 130 >gi|113968387|ref|YP_732180.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4] gi|113883071|gb|ABI37123.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4] Length = 151 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +++A E S +C + C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL QYS++ +V NR+ + Sbjct: 118 LNVLDQYSLQDIVSNRNEL 136 >gi|161870639|ref|YP_001599812.1| hypothetical protein NMCC_1709 [Neisseria meningitidis 053442] gi|161596192|gb|ABX73852.1| nitric oxide-sensitive repressor [Neisseria meningitidis 053442] Length = 147 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E V EC + +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 YLDGFTLQDLLN 130 >gi|319639116|ref|ZP_07993872.1| nitric oxide-sensitive repressor [Neisseria mucosa C102] gi|317399593|gb|EFV80258.1| nitric oxide-sensitive repressor [Neisseria mucosa C102] Length = 152 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 81/131 (61%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I VV+ E V EC + +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLV 131 L QYS++ L+ Sbjct: 119 HLDQYSLQDLL 129 >gi|241760757|ref|ZP_04758848.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens SK114] gi|241318654|gb|EER55206.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens SK114] Length = 152 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA+ IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDSLVNISTIAKTYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I VV+ E V EC + +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLV 131 L QYS++ L+ Sbjct: 119 HLDQYSLQDLL 129 >gi|86139275|ref|ZP_01057845.1| rrf2 family protein [Roseobacter sp. MED193] gi|85824119|gb|EAQ44324.1| rrf2 family protein [Roseobacter sp. MED193] Length = 157 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 78/141 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA + D S+IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAANADRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R ++I I +V + E + + ECFA CPL +C L L A AF+ Sbjct: 61 NGGMALGRRPEEIQIGNVFRDVEGALPMVECFADADNTCPLASACRLKVALSDAAQAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++E LV + + +I Sbjct: 121 SLDDITLEALVCDNHDLMRIL 141 >gi|167621980|ref|YP_001672274.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352002|gb|ABZ74615.1| transcriptional regulator, BadM/Rrf2 family [Shewanella halifaxensis HAW-EB4] Length = 149 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYG+R LMY A++++ + RIS+I E +S + K++ L K G ++TVR Sbjct: 1 MQLTRYTDYGLRTLMYLAVNSERESLFRISEITEVFDLSANHISKVVHHLGKLGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L +PA +I I VV+A E S +C + C +C L L A+NA+ Sbjct: 61 GKSGGFKLAKPAAEINIGQVVRALENSLAPIDCSKPY---CLFTPACKLKGALGDAVNAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL Y+++ +V N+ +K + Sbjct: 118 LAVLDAYTLDMIVTNKQELKSLL 140 >gi|114767192|ref|ZP_01446069.1| Transcriptional regulator [Pelagibaca bermudensis HTCC2601] gi|114540662|gb|EAU43732.1| Transcriptional regulator [Roseovarius sp. HTCC2601] Length = 188 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 78/141 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ R+LM CA++ D R ++IA+ C S ++Q L G +E RGR Sbjct: 34 MRLTTRTNLAARILMACAVNPDRRLRTAEIADLCNCSTNHAAHVVQRLHAEGYLEAQRGR 93 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R Q++I V + E AECF + CPLVG+C L S +R+AL AF+ Sbjct: 94 AGGIRLARAVPQVSIGAVFRLFESEIPFAECFDADTNSCPLVGTCRLRSYIRRALEAFYH 153 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L +++ LVR + ++ Sbjct: 154 ELDLVTLDDLVRGNCGLTELL 174 >gi|121604234|ref|YP_981563.1| BadM/Rrf2 family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593203|gb|ABM36642.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas naphthalenivorans CJ2] Length = 168 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 77/132 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R LMY A + + I IA+A I++ L K++ L G+VE++RGR Sbjct: 1 MRLTTYTDYALRTLMYLAANRERLVTIQDIADAHGIAKNHLTKVVHQLGILGVVESLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R QI I VV++TE F++AECF K C + +C L VL A A+ Sbjct: 61 NGGLRLGREPGQINIGAVVRSTEPDFYMAECFDPGKSHCIMSAACSLKDVLNDATMAYLA 120 Query: 121 VLTQYSIECLVR 132 VL +++ L++ Sbjct: 121 VLDGVTLDYLMK 132 >gi|15676349|ref|NP_273485.1| hypothetical protein NMB0437 [Neisseria meningitidis MC58] gi|254805531|ref|YP_003083752.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|7225662|gb|AAF40875.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|254669073|emb|CBA07596.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|308388639|gb|ADO30959.1| hypothetical protein NMBB_0481 [Neisseria meningitidis alpha710] gi|316984950|gb|EFV63906.1| rrf2 family protein [Neisseria meningitidis H44/76] gi|325128852|gb|EGC51711.1| transcriptional repressor nsrR [Neisseria meningitidis N1568] gi|325130805|gb|EGC53539.1| transcriptional repressor nsrR [Neisseria meningitidis OX99.30304] gi|325132983|gb|EGC55660.1| transcriptional repressor nsrR [Neisseria meningitidis M6190] gi|325134903|gb|EGC57536.1| transcriptional repressor nsrR [Neisseria meningitidis M13399] gi|325137004|gb|EGC59601.1| transcriptional repressor nsrR [Neisseria meningitidis M0579] gi|325138971|gb|EGC61521.1| transcriptional repressor nsrR [Neisseria meningitidis ES14902] gi|325140951|gb|EGC63458.1| transcriptional repressor nsrR [Neisseria meningitidis CU385] gi|325142952|gb|EGC65310.1| transcriptional repressor nsrR [Neisseria meningitidis 961-5945] gi|325144975|gb|EGC67258.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240013] gi|325199624|gb|ADY95079.1| transcriptional repressor nsrR [Neisseria meningitidis H44/76] gi|325202752|gb|ADY98206.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240149] gi|325203544|gb|ADY98997.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240355] gi|325205505|gb|ADZ00958.1| transcriptional repressor nsrR [Neisseria meningitidis M04-240196] gi|325208748|gb|ADZ04200.1| transcriptional repressor nsrR [Neisseria meningitidis NZ-05/33] Length = 147 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E V EC + +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 YLDGFTLQDLLN 130 >gi|119899391|ref|YP_934604.1| AAU3 protein [Azoarcus sp. BH72] gi|119671804|emb|CAL95718.1| AAU3 protein precursor [Azoarcus sp. BH72] Length = 153 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +DY +RVLMY H D + +++IA A ISE L K++ L ++G V+T+RG+ Sbjct: 1 MRLSTFSDYCLRVLMYLGEHADRLSTVAEIARAHDISESHLTKVVHQLGRSGYVDTLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R +I + +V++ TE F + ECF C + G+C L +VL +AL A F Sbjct: 61 GGGMRLARAPREIVLGEVLRQTETDFALVECFGDEP-HCYMEGACQLQAVLGEALGAMFR 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL Y++ L++ ++ Sbjct: 120 VLDGYTLADLLQRPDGSTRVL 140 >gi|119944403|ref|YP_942083.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas ingrahamii 37] gi|119863007|gb|ABM02484.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas ingrahamii 37] Length = 147 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 81/131 (61%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +R+L+Y AI+ND + I++IA++ IS+ L KI+Q L G + +RG+ Sbjct: 1 MHITRYTDYSLRILIYLAINNDQLSTINEIAQSYHISKNHLMKIVQQLNVKGYLLAIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L R I I +V+ E+S + ECF+ + C + SC L + +A +FF+ Sbjct: 61 NGGIKLNRDPGDINIGSLVREMEDSNKLVECFSDNN-HCVISPSCQLKGIFAEAQESFFN 119 Query: 121 VLTQYSIECLV 131 L +Y++ LV Sbjct: 120 TLDKYTLADLV 130 >gi|209884294|ref|YP_002288151.1| putative transcriptional regulator [Oligotropha carboxidovorans OM5] gi|209872490|gb|ACI92286.1| putative transcriptional regulator [Oligotropha carboxidovorans OM5] Length = 149 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+LMY A ND I + AEA IS L K+ L +AG ++ RGR Sbjct: 1 MRLTNFSDYALRILMYAAAQNDRLITIEETAEAYGISRAHLMKVANQLTRAGYLKATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + D+I + DV++ATE F + EC ++ + C + C L L +AL AF + Sbjct: 61 SGGLALAKRPDRIRLSDVLRATEPDFSLVECLTTNNL-CVISPRCRLRGALNEALAAFLE 119 Query: 121 VLTQYSIECLV 131 L Y+++ L+ Sbjct: 120 TLDGYTLDDLI 130 >gi|192359950|ref|YP_001982031.1| rrf2 family protein [Cellvibrio japonicus Ueda107] gi|190686115|gb|ACE83793.1| rrf2 family protein [Cellvibrio japonicus Ueda107] Length = 160 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +RVL+Y A+ + + I +IA++ IS+ L K++Q L G ++ VRG+ Sbjct: 16 MRITRYTDYSLRVLIYVALKGEAISTIREIADSYGISKNHLMKVVQELNNKGYLQAVRGK 75 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I I +V+ TEE F + ECF+ +C L +C L VL KAL AFF Sbjct: 76 HGGLRLNGRPEDINIGRLVRHTEEDFALVECFSGG--ECSLTPACRLKGVLVKALEAFFQ 133 Query: 121 VLTQYSIECLV 131 VL Y++ L+ Sbjct: 134 VLDGYTLADLL 144 >gi|170750041|ref|YP_001756301.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656563|gb|ACB25618.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium radiotolerans JCM 2831] Length = 163 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y +H + I+ IA A ISE L K++ L + G++ T+RGR Sbjct: 1 MRLTRYTDYALRTLIYVGLHEPEQSSIAAIARAYGISENHLTKVVHQLGRLGLIRTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P +I + VV+ TE+ + ECF C + C L VL +AL AF Sbjct: 61 GGGLRLAMPPGEIVVGAVVRQTEDDLALVECFGGGA--CAITAPCRLRRVLGEALAAFLA 118 Query: 121 VLTQYSIECLV 131 VL +Y++ L+ Sbjct: 119 VLDRYTLADLL 129 >gi|134094873|ref|YP_001099948.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133738776|emb|CAL61823.1| HTH-type transcriptional regulator nsrR [Herminiimonas arsenicoxydans] Length = 159 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 75/136 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R LMY ++ D I IA+ IS+ L K++ L +G+VETVRGR Sbjct: 1 MRLTSYTDYALRTLMYLGMNRDNLVTIQDIADLHGISKNHLMKVVHQLGLSGMVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L I I +VV+ TE FF+AECF C SC L VL A+ A+ Sbjct: 61 NGGLKLGHEPADINIGEVVRNTETDFFMAECFDPASNACVYAPSCILKGVLNDAIEAYLA 120 Query: 121 VLTQYSIECLVRNRSS 136 VL ++ L+ +++ Sbjct: 121 VLNNVTLADLIAQKNA 136 >gi|148260795|ref|YP_001234922.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402476|gb|ABQ31003.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum JF-5] Length = 150 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT TDYG+R L++ A+ + I++IA + IS+ L K++ L +AG+VET+RGR Sbjct: 1 MHLTMFTDYGLRTLIFLALRPERQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA I + +V++A E + C + C + G C L +V+ +A +AF Sbjct: 61 HGGMRLARPAANIGLGEVIRAMEPGLALVPCQEGGR--CAIGGCCDLQAVMNEARDAFLG 118 Query: 121 VLTQYSIECLV 131 V +Y++ +V Sbjct: 119 VFDRYTLADVV 129 >gi|188580176|ref|YP_001923621.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi BJ001] gi|179343674|gb|ACB79086.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium populi BJ001] Length = 160 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + + I++IA A ISE L K++ L + G+++T+RGR Sbjct: 1 MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + VV+ TE+ + ECF++ C + C L L +AL AF Sbjct: 61 GGGLRLAKPPGEIVVGAVVRETEDDLALVECFSAGS--CAITAPCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLV 131 VL +Y++ L+ Sbjct: 119 VLDRYTLADLL 129 >gi|126729963|ref|ZP_01745775.1| rrf2 family protein [Sagittula stellata E-37] gi|126709343|gb|EBA08397.1| rrf2 family protein [Sagittula stellata E-37] Length = 161 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 71/121 (58%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +RVLMYCA H + +IA+ C SE L +++ L + G + T RGR GG+ L RPA Sbjct: 1 MRVLMYCAAHTERLVTKHEIAQVCNASENHLAQVINQLAQLGFLHTQRGRNGGLELARPA 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 +I I DV + E+ +AECFA CPL +C L +L KA N+F++ L +++ L Sbjct: 61 SEIVIGDVFRHLEQPVPLAECFADVDNTCPLTEACRLRDLLTKAANSFYETLDPITLDAL 120 Query: 131 V 131 V Sbjct: 121 V 121 >gi|83859025|ref|ZP_00952546.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii HTCC2633] gi|83852472|gb|EAP90325.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii HTCC2633] Length = 152 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 78/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + LT +++ +R+L + A+H R +A A IS L K + L K G ++ VRGR Sbjct: 6 LRLTNFSNFALRLLQFAALHAPNLIRTEDVARAHGISRHHLLKAVNTLEKEGFIKAVRGR 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA+ +T+ +V++ TE + ECF + CPL+G C L++ ++ A AF Sbjct: 66 NGGITLNRPAEDVTVGEVIRITEAPLELVECFNAETNTCPLIGVCHLSASIQTATRAFLA 125 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +I + NRS + N Sbjct: 126 VLDDVTIADIAANRSVLLSRLN 147 >gi|332527665|ref|ZP_08403710.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112067|gb|EGJ12043.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 155 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A I +IA SE L K++ L G++ TVRG+ Sbjct: 1 MKLTSFTDYSLRVLIYLATRPGRRATIGEIAAKFSASENHLTKVVHFLGTEGVLATVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP I + D+V+ TE AECF S C + C L VL +A+ AF+ Sbjct: 61 GGGLGLARPPQDIVVGDIVRRTEGEAMPAECFGSGG-GCAIAPCCRLRGVLGEAVEAFYA 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++E LV NR + I Sbjct: 120 VLDRYTLEDLVANRDQLDAIL 140 >gi|261855536|ref|YP_003262819.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261836005|gb|ACX95772.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 150 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 4/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPN--RISQIAEACCISELFLFKILQPLVKAGIVET 56 M L ++TD+ +R LM A N+ P I +I+E IS + K++ LV+ VE Sbjct: 1 MQLNQQTDFALRALMLLAQEEKNNSPRLLTIREISEFHRISRNHMMKVINTLVEQNFVEA 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG+ GG++L RP+++I + DVV+A E ++ + ECF+ + +C L+ SC L + +ALN Sbjct: 61 KRGQNGGLKLNRPSNEIRVGDVVRALENNWNLVECFSPERQNCQLLPSCQLKYLFHRALN 120 Query: 117 AFFDVLTQ 124 AFF+ L Q Sbjct: 121 AFFEELDQ 128 >gi|163850401|ref|YP_001638444.1| rrf2 family transcriptional regulator [Methylobacterium extorquens PA1] gi|218528961|ref|YP_002419777.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Methylobacterium chloromethanicum CM4] gi|240137477|ref|YP_002961948.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254559655|ref|YP_003066750.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens DM4] gi|163662006|gb|ABY29373.1| transcriptional regulator, Rrf2 family [Methylobacterium extorquens PA1] gi|218521264|gb|ACK81849.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium chloromethanicum CM4] gi|240007445|gb|ACS38671.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254266933|emb|CAX22732.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens DM4] Length = 157 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + + I++IA A ISE L K++ L + G+++T+RGR Sbjct: 1 MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + VV+ TE+ + ECF++ C + C L L +AL AF Sbjct: 61 GGGLRLAKPPAEIVVGAVVRETEDDLALVECFSAGS--CAITAPCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLV 131 VL +Y++ L+ Sbjct: 119 VLDRYTLADLL 129 >gi|171915867|ref|ZP_02931337.1| HTH-type transcriptional regulator [Verrucomicrobium spinosum DSM 4136] Length = 160 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 73/131 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +DY +RVLMY A +S++ +A +S L KI+ L K G + RGR Sbjct: 1 MELSRFSDYSLRVLMYAAAREHEKVTLSELTQAYRVSHHHLVKIVHFLGKQGYLSNRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I + DV++ TE F + ECF C L +C L V R+A +AF D Sbjct: 61 SGGIRLGRAPRDIKVGDVIRHTETHFNLVECFDPANDLCKLSPTCRLRGVFREARDAFLD 120 Query: 121 VLTQYSIECLV 131 VL Y++E LV Sbjct: 121 VLDHYTLEDLV 131 >gi|99082112|ref|YP_614266.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040] gi|99038392|gb|ABF65004.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040] Length = 154 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 79/142 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA++ S+IA C ISE L +++ L + G ++T RGR Sbjct: 1 MRITKRTNIAVRLLMYCALNEGRLVTKSEIAARCNISENHLAQVVNQLSQLGFLKTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R A I I DV + E + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGLALGRAAADICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALTRAGEAFYG 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L S+E L + +++I + Sbjct: 121 ALDGISLESLTCDNIDLQRILS 142 >gi|261378411|ref|ZP_05982984.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685] gi|269145183|gb|EEZ71601.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685] Length = 148 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYAAINDDMLVNIGTIAETYGISKSHLMKVVTSLVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D I I VV+ E V EC + +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDCINIGAVVRHLEPMQLV-ECMGPNN-ECLITPSCRLTGILGGAIKSFFT 118 Query: 121 VLTQYSIECLV 131 L ++++ L+ Sbjct: 119 YLDGFTLQDLL 129 >gi|299538188|ref|ZP_07051473.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726390|gb|EFI66980.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 145 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y D + I +I++A IS+ L K+ L G +ET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+ Sbjct: 61 RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSI 137 +VL QY+++ + ++ + Sbjct: 121 NVLDQYTLDDFLHSKEKL 138 >gi|255067242|ref|ZP_05319097.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256] gi|255048610|gb|EET44074.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256] Length = 154 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAEA IS+ L K++ LVK G + ++RG+ Sbjct: 1 MYLTQHTDYGLRVLIYAAINDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL D+I + VV+ E V EC + +C + SC LT +L A+ AFF Sbjct: 61 GGGLRLADTPDKINVGAVVRHL-EPMQVVECMGENN-ECLITPSCRLTGILGGAIKAFFA 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 HLDGFTLQDLLN 130 >gi|110834981|ref|YP_693840.1| transcriptional regulator [Alcanivorax borkumensis SK2] gi|110648092|emb|CAL17568.1| Transcriptional regulator, putative [Alcanivorax borkumensis SK2] Length = 143 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y ++ H+ P I +IA+A IS + K+ Q LV+ G V+++RG Sbjct: 1 MQLTTHTDYALRTLIYLSLRHDKLPTTIQEIADAYHISNNHVAKVAQTLVQLGYVQSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + +PA++I + ++++ T E+ + +CF + CP+ +C L + L KA AF Sbjct: 61 RSGGLVMAKPANEINVGELIRQT-ENLKLLDCFGTES-SCPIDPACKLKNALGKAQAAFL 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L QY++ N ++ Sbjct: 119 QTLDQYNLADFTDNSDELR 137 >gi|24371645|ref|NP_715687.1| Rrf2 family protein [Shewanella oneidensis MR-1] gi|24345407|gb|AAN53132.1|AE015456_2 Rrf2 family protein [Shewanella oneidensis MR-1] Length = 151 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RIS+I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRISEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + ++++ E S +C + C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPAGEINLGQLIRSLENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL QYS+ +V NR+ + Sbjct: 118 LNVLDQYSLLDIVSNRNEL 136 >gi|154246969|ref|YP_001417927.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161054|gb|ABS68270.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 149 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +TDY +R LM+ A+ D + I++IA A IS+ L K+ Q L G VE VRGR Sbjct: 1 MRLSVQTDYALRTLMFLAV-KDGHHSIAEIAHAYGISKNHLMKVAQRLAAEGFVEGVRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L RPA+ + + +++ E++ ECF + C + +CGL L AL AF Sbjct: 60 SGGLKLARPANALNVGSIMRIMEDTGTFVECFDAATNSCVVTPACGLRHALAGALEAFAR 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L Q++I LV + S +A Sbjct: 120 HLDQFTIADLVPDSKSYGWQLDA 142 >gi|91790549|ref|YP_551501.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666] gi|91699774|gb|ABE46603.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666] Length = 156 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 79/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A I++IA A +SE L K++ L K G + VRG+ Sbjct: 1 MKLTAFTDYSLRVLIYLAAQPQQRATIAEIATAFDVSENHLSKVVHCLGKNGWLANVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L P + I + VV+ TE VAECF+ C + C L VL +A+ AF Sbjct: 61 GGGLELAMPPELIGVGAVVRQTEGVAVVAECFSDKGNHCSITRVCRLRGVLGEAVEAFHA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++ LV+NR S+ ++ Sbjct: 121 VLDRYTLADLVQNRQSLARVL 141 >gi|172057713|ref|YP_001814173.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990234|gb|ACB61156.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 148 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDYG+RVL+Y +H D + IA IS L K+ Q L K G VE+ RGR Sbjct: 1 MRITQYTDYGLRVLIYLGLHRDEVTPMPAIANHYGISSNHLMKVTQQLTKLGYVESTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R ++I I VV+ E + ECFA+ C + C L +L +AL AF Sbjct: 61 TGGLRLIRDPEEINIGKVVREM-EPMDIVECFAADG-HCVIEPQCQLKGILARALRAFIR 118 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Q+++ L++N + +F Sbjct: 119 ELEQHTLAELLKNPYELNLLF 139 >gi|218768796|ref|YP_002343308.1| hypothetical protein NMA2048 [Neisseria meningitidis Z2491] gi|121052804|emb|CAM09151.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|319411035|emb|CBY91435.1| putative HTH-type transcriptional regulator [Neisseria meningitidis WUE 2594] Length = 147 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I I VV+ E V EC + +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLASPPERINIGAVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 YLDGFTLQDLLN 130 >gi|260575577|ref|ZP_05843575.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] gi|259022220|gb|EEW25518.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] Length = 130 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 73/127 (57%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M+CA++ R +A+AC SE L +++ L + G + TVRGR GG+ L RP D+IT Sbjct: 1 MFCAVNPGKVVRKQDVAQACNASENHLAQVIHLLAQKGFLHTVRGRSGGLMLGRPVDEIT 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +V +A E + ECF+ H+ CPL+ SC L L KAL AF+ L ++ +VR Sbjct: 61 VGEVFRAFEATLPFTECFSQHENSCPLIDSCRLKCALVKALAAFYATLDALTLRDMVREN 120 Query: 135 SSIKKIF 141 ++ + Sbjct: 121 GDLEGLL 127 >gi|229917143|ref|YP_002885789.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468572|gb|ACQ70344.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp. AT1b] Length = 146 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 80/136 (58%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY +R LMY A + I ++A+ IS+ + K++ L K G +E+VRGR Sbjct: 1 MRLTQTCDYALRTLMYSATFSHRLVTIQEVADQYNISKNHVMKVVYELGKHGYLESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RP D I + +VV+ T E F + ECF + C + +C L VL +A+ AF Sbjct: 61 GGGFRLARPMDDINVGEVVR-TMEPFELVECFGEGR--CVIAPACDLRGVLNEAMLAFLH 117 Query: 121 VLTQYSIECLVRNRSS 136 VL +Y+I LV NR++ Sbjct: 118 VLDRYTIADLVVNRTN 133 >gi|186475702|ref|YP_001857172.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815] gi|184192161|gb|ACC70126.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815] Length = 175 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 7/133 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ ++ I I++A IS+ L K++Q L + G VETVRGR Sbjct: 11 MRLTDYTDYSLRVLLYLAVRSEGLATIQDISDAYGISKNHLMKVVQRLAELGWVETVRGR 70 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF------ASHKIDCPLVGSCGLTSVLRKA 114 GG+RL + +T+ +VV+ATE F + C +H+ +C + C L S+L A Sbjct: 71 NGGLRLYEHSSSLTVGEVVRATESDFALVSCLNVADASGAHR-ECVIQSHCRLKSILESA 129 Query: 115 LNAFFDVLTQYSI 127 +AFF L Y+I Sbjct: 130 RDAFFRELDNYTI 142 >gi|126728159|ref|ZP_01743975.1| Transcriptional regulator [Sagittula stellata E-37] gi|126711124|gb|EBA10174.1| Transcriptional regulator [Sagittula stellata E-37] Length = 171 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 76/141 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ RVLM+CA + R +QIA AC S + +++Q L G + T RGR Sbjct: 1 MRLTTRTNLAARVLMFCAANPGTQVRSAQIAAACNASANHVARVVQQLQSEGFLSTRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L RP I+I V + E AECF CPL G+C L L +AL+AF+ Sbjct: 61 TGGLQLARPPSAISIGTVFRLFETEIPFAECFDPVANTCPLTGTCRLKRYLTRALDAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L + +++ L + + ++ Sbjct: 121 ELDRVTLDDLTQGNCGLDRLL 141 >gi|126739737|ref|ZP_01755428.1| rrf2 family protein [Roseobacter sp. SK209-2-6] gi|126718969|gb|EBA15680.1| rrf2 family protein [Roseobacter sp. SK209-2-6] Length = 149 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 78/141 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LM+CA ++D S+IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMFCAANSDRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R +I + D+ + E + + ECFA CPL +C L L A AF+ Sbjct: 61 NGGMSLGRDPQEILMGDIFRHVEGNLPMVECFADADNSCPLTDACRLRVALSDAAQAFYS 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L +++ LV + + ++ Sbjct: 121 SLDDITLDSLVCDNHDLMRLL 141 >gi|261401746|ref|ZP_05987871.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970] gi|313667825|ref|YP_004048109.1| transcriptional regulator [Neisseria lactamica ST-640] gi|269208119|gb|EEZ74574.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970] gi|309379076|emb|CBX22378.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005287|emb|CBN86720.1| transcriptional regulator [Neisseria lactamica 020-06] Length = 148 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y A+++D I+ IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I I VV+ E V EC + +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLASPPERINIGAVVRHLEPMQLV-ECMGPNN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 YLDGFTLQDLLN 130 >gi|254485469|ref|ZP_05098674.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101] gi|214042338|gb|EEB82976.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101] Length = 152 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 73/137 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT T+Y +R L AI R+ +A+ +S + KI+ L KAG +ETVRGR Sbjct: 1 MKLTSYTNYAMRSLQLAAIKAPDLVRVDDVAKIHNLSRPHIMKIVHELGKAGYLETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R I + DVV+ TE V ECF K CPL+G C L+ +++A AF Sbjct: 61 GGGFRLARDPADIIVGDVVRITEGPLDVVECFNPEKNTCPLIGICILSRKMQEATAAFMA 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL +I + NR + Sbjct: 121 VLDDLTIADITANRGQL 137 >gi|169829842|ref|YP_001700000.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168994330|gb|ACA41870.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 145 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y D + I +I+EA IS+ L K+ L G +ET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISEAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+ Sbjct: 61 RGGGIRLAIDPKSITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSI 137 VL +Y+++ + ++ + Sbjct: 121 TVLDRYTLDDFLHSKEKL 138 >gi|59801857|ref|YP_208569.1| hypothetical protein NGO1519 [Neisseria gonorrhoeae FA 1090] gi|194099329|ref|YP_002002430.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945] gi|239999588|ref|ZP_04719512.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02] gi|240014762|ref|ZP_04721675.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI18] gi|240017211|ref|ZP_04723751.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA6140] gi|240081152|ref|ZP_04725695.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19] gi|240113364|ref|ZP_04727854.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11] gi|240116288|ref|ZP_04730350.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18] gi|240118576|ref|ZP_04732638.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1] gi|240121285|ref|ZP_04734247.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID24-1] gi|240124119|ref|ZP_04737075.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332] gi|240126265|ref|ZP_04739151.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679] gi|240128788|ref|ZP_04741449.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035] gi|254494301|ref|ZP_05107472.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291] gi|260439895|ref|ZP_05793711.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2] gi|268595398|ref|ZP_06129565.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02] gi|268597263|ref|ZP_06131430.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19] gi|268599439|ref|ZP_06133606.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11] gi|268601953|ref|ZP_06136120.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18] gi|268604283|ref|ZP_06138450.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1] gi|268682742|ref|ZP_06149604.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332] gi|268684848|ref|ZP_06151710.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679] gi|268687169|ref|ZP_06154031.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035] gi|291043171|ref|ZP_06568894.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2] gi|293398504|ref|ZP_06642682.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62] gi|59718752|gb|AAW90157.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934619|gb|ACF30443.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945] gi|226513341|gb|EEH62686.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291] gi|268548787|gb|EEZ44205.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02] gi|268551051|gb|EEZ46070.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19] gi|268583570|gb|EEZ48246.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11] gi|268586084|gb|EEZ50760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18] gi|268588414|gb|EEZ53090.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1] gi|268623026|gb|EEZ55426.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332] gi|268625132|gb|EEZ57532.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679] gi|268627453|gb|EEZ59853.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035] gi|291012777|gb|EFE04760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2] gi|291610975|gb|EFF40072.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62] gi|317164836|gb|ADV08377.1| hypothetical protein NGTW08_1415 [Neisseria gonorrhoeae TCDC-NG08107] Length = 147 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y A+++D I+ IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I I VV+ E V EC + +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPERINIGAVVRHLEPMQLV-ECMGPNN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L ++++ L+ N+ + ++ + Sbjct: 119 YLDGFTLQDLL-NKPTYDLLYES 140 >gi|110678148|ref|YP_681155.1| hypothetical protein RD1_0790 [Roseobacter denitrificans OCh 114] gi|109454264|gb|ABG30469.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 156 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 73/137 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT T++ +R L A+ + R+ + ++ + KI+ L AG V T RGR Sbjct: 1 MKLTSYTNFALRSLQLAALKSPELIRVDDVVRVHGLARPHIVKIVHELGVAGYVVTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL +PA +I I DVV+ TE + ECF K CPL+G C L+ L+KA AF D Sbjct: 61 NGGFRLGKPAKEIVIGDVVRLTEGPLDLVECFNPEKNTCPLIGICKLSRALQKATRAFMD 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL ++ + NR + Sbjct: 121 VLDDLTLADIAANRDDL 137 >gi|322831162|ref|YP_004211189.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602] gi|321166363|gb|ADW72062.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602] Length = 141 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + +D ISQ+ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDDQMTNISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG++L +PA+ I I DVV+ E V C + C + +C L VL A+ F Sbjct: 61 KNGGIKLGKPAETIRIGDVVRELEPLSLV-NCASDF---CHITPACRLKQVLHTAVEHFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D L QY++ +V++ S++ K+ Sbjct: 117 DELNQYTLADMVKDNSTLYKLL 138 >gi|92118751|ref|YP_578480.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801645|gb|ABE64020.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter hamburgensis X14] Length = 142 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT DY +R+LMY A H+D I + A IS L K+ L +AG ++ VRGR Sbjct: 1 MRLTSFFDYTLRLLMYAATHSDRLITIEETAGVYGISRTHLMKVANQLTRAGYLKAVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++I + DV+ ATE F + ECF+++ CP+ SC L + LR+AL AF Sbjct: 61 SGGLALAKRPNRIKLGDVLCATEPDFALVECFSANN-HCPISSSCRLRAPLREALAAFTA 119 Query: 121 VLTQYSIECLV 131 L +Y++ L+ Sbjct: 120 TLDRYTLADLI 130 >gi|91774995|ref|YP_544751.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708982|gb|ABE48910.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus flagellatus KT] Length = 149 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD G+RVLMY + H + P IS+IA I L K++ L K G ++T RG Sbjct: 1 MQLTKFTDLGLRVLMYVSQHERNKPITISEIATQFNIPRNHLIKVVTFLNKTGWIQTTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL + + V++ E S + C + CPL G CGL L LNAF+ Sbjct: 61 PNGGLRLGTDPASLHLGHVIRVLEGSASLVNC---QEPPCPLAGQCGLKHALDLGLNAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 D + Y+++ ++RNR++ Sbjct: 118 DYMDTYTLQDVIRNRTA 134 >gi|126665836|ref|ZP_01736817.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17] gi|126629770|gb|EBA00387.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17] Length = 145 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A D I +A+A IS+ L K++ L G +ETVRG+ Sbjct: 1 MHITRYTDYSLRVLVYLAACGDRLVTIQDVADAYDISKNHLMKVVHQLNLKGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I I +V+ TE + ECF+++ C + C L S+LR+AL AF Sbjct: 61 NGGMRLRRQPSSINIGALVRDTEPDLNLVECFSANN-QCCITPVCSLQSMLREALQAFLA 119 Query: 121 VLTQYSIECLVR 132 L Y++ +VR Sbjct: 120 TLDTYTLADVVR 131 >gi|107028973|ref|YP_626068.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689869|ref|YP_835492.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105898137|gb|ABF81095.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia AU 1054] gi|116647958|gb|ABK08599.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia HI2424] Length = 171 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + Q+T+ +VV+ATE F + CF++ ++ C + C L VL A +A Sbjct: 61 NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGVESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L ++++ L S + + Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145 >gi|260429630|ref|ZP_05783607.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45] gi|260420253|gb|EEX13506.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45] Length = 150 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TDY +RV +Y H D IS+I A +S+ L K++Q LV+ G +++ RGR Sbjct: 1 MHLSKFTDYALRVCLYLGAHQDRVVPISEITRAHGLSQSNLMKVVQQLVEGGFLKSTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L RPA +I + +V + E + +C C L+G+CGL L +A NAF+ Sbjct: 61 SGGVTLARPAAEIRVGEVARFMEGDSGLVDCST-----CILIGACGLVRGLNEAKNAFYQ 115 Query: 121 VLTQYSI 127 L + S+ Sbjct: 116 SLDRSSL 122 >gi|254671066|emb|CBA07956.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 145 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 2/130 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ G Sbjct: 1 MTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGKGG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+RL P D+I I VV+ E V EC + +C + SC LT +L A+ +FF L Sbjct: 61 GLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFTYL 118 Query: 123 TQYSIECLVR 132 ++++ L+ Sbjct: 119 DGFTLQDLLN 128 >gi|220934620|ref|YP_002513519.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995930|gb|ACL72532.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7] Length = 143 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y A++ D +RI+ IAEA IS L K++ L G + T RG+ Sbjct: 1 MQLTRHTDYALRVLIYLAVNPDRLSRITDIAEAYDISRHHLVKVVHELAGHGHILTYRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP +I I DVV+ EE+ + C A C ++ C L VL A +AF Sbjct: 61 HGGMRLARPPAEIRIGDVVRDMEENLEIINCSAPM---CIILPDCRLKGVLNDARDAFMA 117 Query: 121 VLTQYSIECLV 131 L + ++ LV Sbjct: 118 TLDRVTLAELV 128 >gi|83954868|ref|ZP_00963546.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1] gi|83840594|gb|EAP79766.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1] Length = 156 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 72/137 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT T++ +R L A+ R+ + ++ + KI+ L +AG V T RGR Sbjct: 1 MKLTSYTNFALRSLQLAALKEPDLIRVDDVVRVHGLARPHIVKIVHELGRAGYVATQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA+ I I DVV+ TE + ECF + CPL+G C L+ L++A AF Sbjct: 61 NGGFRLARPAEDIVIGDVVRLTEGPLDLVECFNPERNTCPLIGICKLSRALQEATGAFMA 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL ++ + NR + Sbjct: 121 VLDNLTLSDIASNRGDL 137 >gi|254450707|ref|ZP_05064144.1| rhizobial iron transcriptional regulator protein [Octadecabacter antarcticus 238] gi|198265113|gb|EDY89383.1| rhizobial iron transcriptional regulator protein [Octadecabacter antarcticus 238] Length = 143 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL K +DY +R+L+ ++ S IA++ +S+ + K+ LV+ G V + RGR Sbjct: 1 MHLDKFSDYAVRILIALSVSKAGRVPASSIAQSYGLSQHHIAKVATELVRGGFVTSDRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L RPA I+I V+++ VAECF S +C ++ +CGL + L +A +AFF Sbjct: 61 GGGLQLARPATDISIGAVLRSIMADDPVAECFGSAP-NCAILPACGLRTPLTQAKDAFFS 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL Y+++ + + +S++ + +A Sbjct: 120 VLDGYTLDDVTQRKSALADLLSA 142 >gi|170729199|ref|YP_001763225.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814546|gb|ACA89130.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC 51908] Length = 152 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L K G +ETVR Sbjct: 1 MQLTRYTDFGIRTLMYLALQPERETLFRIAEITEVFELSPNHVSKIVHHLGKLGYLETVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL PA +I I +V+ E S +C +K C +C L VL +A++A+ Sbjct: 61 GKSGGFRLGMPASEINIGQLVRVLENSLAPIDC---NKPYCLFTPACKLRGVLAEAVSAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL ++S+E +V NR + K+ Sbjct: 118 LAVLDKHSLEDVVSNRQQLLKLL 140 >gi|331694605|ref|YP_004330844.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949294|gb|AEA22991.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia dioxanivorans CB1190] Length = 148 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T DY +RVL+Y + + IA A IS L K++ L AG+VET RGR Sbjct: 1 MRHTNHADYALRVLLYLRVAPGRRGSVGDIATAHHISRHHLDKVVTGLAAAGLVETARGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R IT+ ++++A E + V EC + C + G CG +V +AL+A+F Sbjct: 61 GGGVRLVRDPASITLGEIMRAMENDYAVVECLGPARF-CRVAGVCGARNVFSRALDAYFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL ++E + N ++ Sbjct: 120 VLDDATLEEIADNDLGLRGALG 141 >gi|298370162|ref|ZP_06981478.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str. F0314] gi|298281622|gb|EFI23111.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str. F0314] Length = 150 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAETYNISKSHLMKVVTALVKGGFLTSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L P ++I I VV+ E V EC +C + SC L +L + AF + Sbjct: 61 GGGLKLAEPPEKINIGSVVRHLEPMQLV-ECMGRDN-NCLITPSCRLADILSGGIKAFLN 118 Query: 121 VLTQYSIECLVR 132 L +++ L+ Sbjct: 119 YLDGFTLSDLLN 130 >gi|126650509|ref|ZP_01722732.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905] gi|126592665|gb|EAZ86664.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905] Length = 145 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y D + I +I++A IS+ L K+ L G +ET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+ Sbjct: 61 RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSI 137 VL +Y+++ + ++ + Sbjct: 121 TVLDRYTLDDFLHSKEKL 138 >gi|89900652|ref|YP_523123.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345389|gb|ABD69592.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 154 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+LMY H + IS++A A ISE L KI L AG +ETVRG+ Sbjct: 1 MRLTTMSDYAMRLLMYVGQHPERLCTISEVARAYEISEAHLTKITHQLALAGWLETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL I + VV++ E F + EC S C L SC LT ++ AL +F Sbjct: 61 GGGMRLAAAPQDIGLGAVVRSMEPDFTIVECLTS-DTTCQLTSSCHLTGIINGALQSFMQ 119 Query: 121 VLTQYSIECLV 131 L +Y++ L+ Sbjct: 120 YLDRYTLADLL 130 >gi|187923802|ref|YP_001895444.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Burkholderia phytofirmans PsJN] gi|187714996|gb|ACD16220.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phytofirmans PsJN] Length = 166 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 3/130 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + I I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGGGLSTIQDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ ++V+ATE F + CF + C + C L L A NA Sbjct: 61 NGGLRLAEQTNALTVGEIVRATESDFALVGCFPDQHGERRGCVITAQCRLRGALEAARNA 120 Query: 118 FFDVLTQYSI 127 F L +++I Sbjct: 121 FLTELDRHTI 130 >gi|114565174|ref|YP_752688.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella frigidimarina NCIMB 400] gi|114336467|gb|ABI73849.1| transcriptional regulator, BadM/Rrf2 family [Shewanella frigidimarina NCIMB 400] Length = 151 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR+LMY A+ ++ N RI+++ +S + KI+ L K G ++TVR Sbjct: 1 MQLTRYTDFGIRILMYLAVQSERENLFRIAEVTSVFDLSSNHVAKIIHQLGKMGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL + AD++ I +V+ E S +C + + C C L VL +A+ A+ Sbjct: 61 GKSGGFRLAKAADEVLIGQLVRDLEHSLSPIDCESPY---CRFTPICRLKGVLGQAVTAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 VL QY++ +V N+S I Sbjct: 118 LAVLDQYTLADIVSNKSDI 136 >gi|238022039|ref|ZP_04602465.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147] gi|237866653|gb|EEP67695.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147] Length = 152 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL+Y A+++ I IAE IS+ L K++ LVK G + ++RG+ Sbjct: 1 MYLTQQTDYALRVLIYAAVNDQSLVNIGTIAETYNISKSHLMKVVTALVKGGFLTSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L +P ++I + VV+ TE +AECF + C + +C L+ +L L AF + Sbjct: 61 GGGLKLAQPPEKIRVGTVVRVTEP-LQLAECFGDNN-QCLITPTCRLSQILNSGLIAFIN 118 Query: 121 VLTQYSIECLVR 132 L Y++ LV Sbjct: 119 HLDGYTLADLVN 130 >gi|127514738|ref|YP_001095935.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica PV-4] gi|126640033|gb|ABO25676.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica PV-4] Length = 150 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L K G ++TVR Sbjct: 1 MQLTRYTDFGIRTLMYLALSPERETLFRIAEITEVFDLSANHVSKIVHHLGKEGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L +PADQI I +V+ E S +C + C +C L VL +A++A+ Sbjct: 61 GKAGGFKLGKPADQINIGVLVRTLENSLSPIDCSKPY---CRFSPACQLKGVLAEAVDAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL +YS+ +V NR ++ + Sbjct: 118 LAVLDKYSLADVVSNRDELRALL 140 >gi|170692319|ref|ZP_02883482.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] gi|170142749|gb|EDT10914.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] Length = 169 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y AI + + I I++A +S+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAIRGEGLSTIQDISDAYGVSKNHLMKVVQQLSELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL ++T+ ++V+ATE F + C + C + C L +VL A NA Sbjct: 61 NGGLRLAERTRKLTVGEIVRATESDFALVACLPDQNGERRPCVITPQCRLRNVLEAARNA 120 Query: 118 FFDVLTQYSIE 128 F L +++I+ Sbjct: 121 FLAELDRHTID 131 >gi|120600824|ref|YP_965398.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1] gi|146291147|ref|YP_001181571.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560917|gb|ABM26844.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. W3-18-1] gi|145562837|gb|ABP73772.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens CN-32] gi|319428504|gb|ADV56578.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens 200] Length = 151 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I + +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +V+ E S +C + C +C L VL A++A+ Sbjct: 61 GKMGGFRLGKPACEINLGQLVRVLENSLAPIDCSKPY---CRFTPACKLKGVLAHAVDAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL QYS++ +V NR + Sbjct: 118 LNVLDQYSLQDIVSNRDEL 136 >gi|260576973|ref|ZP_05844954.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] gi|259020815|gb|EEW24130.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] Length = 157 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 75/141 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +T+ RVLM CA++ R ++IA AC S L ++ L G +ETVRGR Sbjct: 1 MRLTTKTNLAARVLMACAVNEGVTLRTAEIARACNASLNHLLLVVNALHTNGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP Q+++ +V + E AECF CPL +C L S + +A+ AF+ Sbjct: 61 SGGLHLTRPPAQVSMGEVFRTFESGTPFAECFDPDTNTCPLSTTCRLRSYVARAVEAFYH 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 + ++E LV+ + + Sbjct: 121 EMDMVTLEDLVKGNCGLSGLL 141 >gi|217968854|ref|YP_002354088.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thauera sp. MZ1T] gi|217506181|gb|ACK53192.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T] Length = 163 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T+ TDY +R+LMY + I ++AE IS L K++ LV G V+ RG+ Sbjct: 1 MNITQHTDYALRLLMYLGTCTERRVTIKEVAERFDISRSHLMKVVTGLVAKGFVDGARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A QI + DVV+ E SF + ECF S C L +C L L AL AFF Sbjct: 61 GGGLRLARAATQIGLGDVVRGMEPSFELVECFGSGS-HCLLDPACRLKGALAGALQAFFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L + ++ L+ + + + Sbjct: 120 ALDRLTLADLIGDDGQLHAVLG 141 >gi|126176517|ref|YP_001052666.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS155] gi|152998594|ref|YP_001364275.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS185] gi|160873169|ref|YP_001552485.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS195] gi|217971259|ref|YP_002356010.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS223] gi|304412444|ref|ZP_07394051.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|307305788|ref|ZP_07585534.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] gi|125999722|gb|ABN63797.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS155] gi|151363212|gb|ABS06212.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS185] gi|160858691|gb|ABX47225.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS195] gi|217496394|gb|ACK44587.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS223] gi|304349279|gb|EFM13690.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|306911281|gb|EFN41707.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] gi|315265394|gb|ADT92247.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS678] Length = 151 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I + +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKMGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +V+ E S +C + C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLVRVLENSLAPIDCSKPY---CRFTPACKLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL QY++ +V NR + Sbjct: 118 LNVLDQYTLLDIVSNRDEL 136 >gi|261365670|ref|ZP_05978553.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996] gi|288565837|gb|EFC87397.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996] Length = 154 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y A+++D I IAEA IS+ L K++ LVK G + + RG+ Sbjct: 1 MYLTQHTDYGLRVLIYAAVNDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL D+I + VV+ E + EC + +C + SC L +L A+ AFF Sbjct: 61 GGGLRLADTPDKINVGAVVRHL-EPMQIVECMGENN-ECLITPSCRLAGILGGAIKAFFA 118 Query: 121 VLTQYSIECLVR 132 L ++++ L+ Sbjct: 119 HLDGFTLQDLLN 130 >gi|254492393|ref|ZP_05105565.1| Transcriptional regulator superfamily [Methylophaga thiooxidans DMS010] gi|224462285|gb|EEF78562.1| Transcriptional regulator superfamily [Methylophaga thiooxydans DMS010] Length = 143 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +DY +R+L+Y AIH D P + AE +S L K+ Q LV+ +V + RG Sbjct: 1 MQLTTHSDYALRLLIYLAIHPGDKPATVKDAAERYGVSTNHLAKVAQRLVQEKLVISQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L + I I +++ TE + + ECF CP+ C L S LRKA AFF Sbjct: 61 RGGGLKLATTPESINIGQLIRKTE-NLELLECFGD-DCACPIESVCILFSALRKAQKAFF 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 DVL Y++ +V+N+ + + N Sbjct: 119 DVLDGYTLADVVKNKHRLMQSLN 141 >gi|170733208|ref|YP_001765155.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254248038|ref|ZP_04941359.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184] gi|124872814|gb|EAY64530.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184] gi|169816450|gb|ACA91033.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia MC0-3] Length = 171 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + Q+T+ +VV+ATE F + CF++ + C + C L VL A +A Sbjct: 61 NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L ++++ L S + + Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145 >gi|119773198|ref|YP_925938.1| Rrf2 family protein [Shewanella amazonensis SB2B] gi|119765698|gb|ABL98268.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis SB2B] Length = 151 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L KAG ++TVR Sbjct: 1 MQLTRYTDFGIRTLMYMAVQPERTALFRIAEITEVFDLSPNHVSKIIHHLGKAGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +V+ E S C K C L+ +C L VL A+ A+ Sbjct: 61 GKAGGFRLAKPAAEINLGALVRELEHSLAPINC---SKPVCRLLPACQLKGVLANAVQAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 VL QY + +V NR + Sbjct: 118 LAVLDQYQLADIVTNRDEL 136 >gi|295676448|ref|YP_003604972.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] gi|295436291|gb|ADG15461.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] Length = 176 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ D + I I+EA IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYALRVLLYLAVRGDGLSTIQDISEAYGISKNHLMKVVQQLGEFGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ DVV+ TE F + C + C + C L L+ A A Sbjct: 61 NGGLRLSAQSLSLTVGDVVRVTESDFALVGCLPDRQGQQRPCVITSQCRLRGALQAANLA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 F L +++I + + +S + + G Sbjct: 121 FLAELDRFTIGDVAQPKSPLAALLGLG 147 >gi|299531825|ref|ZP_07045227.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] gi|298720266|gb|EFI61221.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] Length = 153 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LM+ A + IS++A+A ISE L K+ L G +ETVRG+ Sbjct: 1 MRLTLMTDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R QI I V++ E F + ECF + C L G C L +L+ AL++F Sbjct: 61 GGGMRLAREPKQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMA 119 Query: 121 VLTQYSIECLV 131 L +++ L+ Sbjct: 120 HLDGFTLADLI 130 >gi|88800419|ref|ZP_01115984.1| hypothetical protein MED297_07531 [Reinekea sp. MED297] gi|88776866|gb|EAR08076.1| hypothetical protein MED297_07531 [Reinekea sp. MED297] Length = 155 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T+ TDY +RVL+Y + ++P RI +AE+ IS+ L K++Q L G V+ RGR Sbjct: 1 MNITRFTDYALRVLVYLNVDTEHPARIQDVAESYDISKNHLMKVVQVLNAQGYVKATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I ++V+ EE + ECF + C + +C + + A+ FF Sbjct: 61 NGGIALSRPASEINIGELVRYFEEGSKLVECFGADN-QCVITPACQIKQMFTGAMEQFFC 119 Query: 121 VLTQYSI 127 L Q+++ Sbjct: 120 HLDQFTL 126 >gi|327440415|dbj|BAK16780.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 153 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDY +R LMY + + I +IA+A IS+ L K+ L K G +ET+RG Sbjct: 5 VRLTVYTDYSLRTLMYLGVRGRENLVTIQEIADAYQISKNHLMKVTHDLGKIGYIETIRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL +QI I +VV+ TE+ F + ECF C + C L L++AL A+ Sbjct: 65 RGGGIRLAVEPEQINIGEVVRKTEDDFHLVECFNPEGNLCKISPECRLKFALQEALKAYL 124 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ ++ ++ + ++F Sbjct: 125 AVLDTYTLADVLVSKDILSELF 146 >gi|221066727|ref|ZP_03542832.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] gi|220711750|gb|EED67118.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] Length = 154 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LM+ A + IS+I++A ISE + K+ L + G ++TVRG+ Sbjct: 1 MRLTLMTDYALRLLMHVAQRPERLCTISEISQAYGISEAHMMKVTHQLAQQGWIKTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL QI + VV+ E F + ECF + C L G C LT +L+ AL++F Sbjct: 61 GGGMRLAHEPQQINLGAVVRGMEPDFALVECFTNDN-RCMLAGDCRLTGLLQGALHSFMA 119 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L +++ L+ ++S ++ Sbjct: 120 HLDGFTLATLLIPQASANEL 139 >gi|40063649|gb|AAR38438.1| rrf2 family protein [uncultured marine bacterium 582] Length = 147 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 75/141 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+K TDY +R+LM+ A+ + + QIAE L K+ Q LV+ G V +VRGR Sbjct: 1 MQLSKFTDYALRILMHLAVADKHMLTTRQIAEIHDAKYNHLAKVTQWLVRKGYVASVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + + + VV+ E + +C C L SCGLTS LR A AFF Sbjct: 61 SGGLRLAKETNDVNVGLVVRDLEGQSELVDCLRPSGGSCILAPSCGLTSALRAAQEAFFQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++ L +N + I ++ Sbjct: 121 SLDTLTLADLTKNDAPISRLL 141 >gi|206560284|ref|YP_002231048.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036325|emb|CAR52221.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 172 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALNA 117 GG+RL + Q+T+ VV+ATE F + CF+ S C + C L VL A +A Sbjct: 61 NGGLRLFADSLQLTVGQVVRATENDFALVGCFSPDDSESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L S + + Sbjct: 121 FFAELDRHTIGELAEPASPLVALLG 145 >gi|134295879|ref|YP_001119614.1| BadM/Rrf2 family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139036|gb|ABO54779.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia vietnamiensis G4] Length = 171 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 3/130 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A +S+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYALRVMLYLAVRGDGLATIQEISDAYGVSKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + ++TI VV+ATE F + CFA + C + C L VL A +A Sbjct: 61 NGGLRLFPASLKLTIGQVVRATENDFALVGCFAPDGGESRGCVIQPQCQLKGVLAAARDA 120 Query: 118 FFDVLTQYSI 127 FF L +++I Sbjct: 121 FFAELDRHTI 130 >gi|323526163|ref|YP_004228316.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323383165|gb|ADX55256.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1001] Length = 166 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I+EA IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISEAYGISKNHLMKVVQRLSELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ ++V+ATE F + C + C + C L +VL A +A Sbjct: 61 NGGLRLAERSRTLTVGEIVRATENDFALVACLPDQDGQRRPCVITPQCRLRNVLEAARHA 120 Query: 118 FFDVLTQYSIE 128 F L +++IE Sbjct: 121 FLAELDRHTIE 131 >gi|51594783|ref|YP_068974.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis IP 32953] gi|150260577|ref|ZP_01917305.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125] gi|153947883|ref|YP_001402601.1| NsrR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|161484881|ref|NP_667973.2| transcriptional repressor NsrR [Yersinia pestis KIM 10] gi|161511445|ref|NP_991928.2| transcriptional repressor NsrR [Yersinia pestis biovar Microtus str. 91001] gi|162100152|ref|YP_653811.2| transcriptional repressor NsrR [Yersinia pestis Antiqua] gi|162139427|ref|YP_649219.2| transcriptional repressor NsrR [Yersinia pestis Nepal516] gi|167470114|ref|ZP_02334818.1| nitrite-sensitive repressor NsrR [Yersinia pestis FV-1] gi|218927582|ref|YP_002345457.1| transcriptional repressor NsrR [Yersinia pestis CO92] gi|229836639|ref|ZP_04456805.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A] gi|229840251|ref|ZP_04460410.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842329|ref|ZP_04462484.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903932|ref|ZP_04519045.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516] gi|270489081|ref|ZP_06206155.1| Rrf2 family protein [Yersinia pestis KIM D27] gi|81640568|sp|Q66FA9|NSRR_YERPS RecName: Full=HTH-type transcriptional repressor nsrR gi|119372265|sp|Q1C106|NSRR_YERPA RecName: Full=HTH-type transcriptional repressor nsrR gi|119372266|sp|Q0WJT1|NSRR_YERPE RecName: Full=HTH-type transcriptional repressor nsrR gi|119372267|sp|Q1CEG1|NSRR_YERPN RecName: Full=HTH-type transcriptional repressor nsrR gi|189030892|sp|A7FMX3|NSRR_YERP3 RecName: Full=HTH-type transcriptional repressor nsrR gi|51588065|emb|CAH19671.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|115346193|emb|CAL19061.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149289985|gb|EDM40062.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125] gi|152959378|gb|ABS46839.1| nitrite-sensitive repressor NsrR [Yersinia pseudotuberculosis IP 31758] gi|229679702|gb|EEO75805.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516] gi|229690639|gb|EEO82693.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696617|gb|EEO86664.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706323|gb|EEO92331.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A] gi|270337585|gb|EFA48362.1| Rrf2 family protein [Yersinia pestis KIM D27] gi|320013755|gb|ADV97326.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 141 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQILIGDVVRQMEPLTLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ S + K+ Sbjct: 117 KELDNYTLADMVKDNSPLYKLL 138 >gi|254515045|ref|ZP_05127106.1| Rrf2 family protein [gamma proteobacterium NOR5-3] gi|219677288|gb|EED33653.1| Rrf2 family protein [gamma proteobacterium NOR5-3] Length = 137 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 73/128 (57%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+LM+CAIH RI +A A IS+ L K + L + G + T RGR GG++L Sbjct: 1 MRILMHCAIHPGRIVRIQDVATAFGISKAHLLKSARHLGQLGYLSTSRGRNGGIQLGMAP 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 ++I + V++ E+S ECF SH CP+VG C LT + RK L AF+ L S+ + Sbjct: 61 ERIFVGKVIRELEDSGDFVECFNSHTNTCPIVGPCKLTGLFRKGLEAFYKELDDVSLADI 120 Query: 131 VRNRSSIK 138 V + +++ Sbjct: 121 VGDGRALR 128 >gi|163797341|ref|ZP_02191294.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] gi|159177432|gb|EDP61988.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] Length = 158 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +R L+ A++ I +IA IS+ L K++ L + I+ + RG+ Sbjct: 1 MQLSQFTDYALRTLILVALNGSRRTTIDEIATRYGISKEHLRKVVHLLSRLSILHSTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL PA I I D+V+ATE F +AEC A CP+ G C L+ +LR A AF Sbjct: 61 GGGLRLNIPAKAIRIGDIVRATEGGFAMAECLRADRAGHCPIDGVCRLSGILRGATAAFL 120 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++++ L+ +R S+ Sbjct: 121 TELDRHTLADLIADRDSL 138 >gi|296114961|ref|ZP_06833606.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769] gi|295978479|gb|EFG85212.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769] Length = 164 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + I ++A+A +SE + K++ L +AG++ TVRGR Sbjct: 1 MRLTLHTDYALRVLLYVALRPETRVSIREVAQANRVSETHMVKVVHKLGRAGLIRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG+ L + A+ I I VV+ TEE + C + DC L G C VL AL+AF Sbjct: 61 GGGIELGQAAEDIRIGAVVRLTEEERQLVSCMRPKAEAEDCVLSGFCQFYFVLGTALDAF 120 Query: 119 FDVLTQYSI 127 +VL ++++ Sbjct: 121 MEVLDRWTL 129 >gi|258512207|ref|YP_003185641.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478933|gb|ACV59252.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 140 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT TDY +RVL+Y A D ++ +IA IS L K + L + G +ETVRG Sbjct: 1 MNLTLFTDYALRVLIYTANQPDGRLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL P + I I DVV+A E+ F V CFA+ C L+ C L L +A++AF Sbjct: 61 RGGGMRLAMPPNDIRIGDVVRAMEDDFAVVGCFANDS--CVLLPGCKLRRALGEAVDAFL 118 Query: 120 DVLTQYSI 127 + L QY++ Sbjct: 119 ETLNQYTL 126 >gi|307292739|ref|ZP_07572585.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] gi|306880805|gb|EFN12021.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] Length = 150 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL++ + I +IA+A +S L K++ L + G+++T RGR Sbjct: 1 MQLTRHTDYALRVLIHLTVAPSGRATIPEIADAYSLSRNHLMKVVHHLGQGGLLDTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP + I+I +VV+ +E +A+C + C L +CGL+++L+ A AF Sbjct: 61 GGGFTLARPPEAISIGEVVRHSEPDMNMADCGS-----CALRTACGLSAILKAATAAFLA 115 Query: 121 VLTQYSIECLVRNR 134 VL ++S+ R++ Sbjct: 116 VLDRHSLADAARDK 129 >gi|163749814|ref|ZP_02157059.1| Rrf2 family protein [Shewanella benthica KT99] gi|161330328|gb|EDQ01307.1| Rrf2 family protein [Shewanella benthica KT99] Length = 152 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYGIR LMY AI + RIS+I + +S + KI+ L K G ++T+R Sbjct: 1 MQLTRYTDYGIRTLMYLAIQPERETLFRISEITQVFDLSPNHVSKIVHHLGKLGYLKTIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL + +I I +V+ E S +C + C L SC L VL +A+ A+ Sbjct: 61 GKSGGFRLGKSPKEINIGQLVRVLENSLTPIDCSKPY---CRLTPSCQLWGVLAEAVTAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL QYS+ +V N + K+ Sbjct: 118 LTVLDQYSLADIVSNNHELVKLL 140 >gi|237750663|ref|ZP_04581143.1| transcriptional regulator [Helicobacter bilis ATCC 43879] gi|229373753|gb|EEO24144.1| transcriptional regulator [Helicobacter bilis ATCC 43879] Length = 139 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+K +DY R L+Y A H++ N I +A IS+ L KI+ L K ++T RGR Sbjct: 1 MQLSKFSDYSFRALIYLAQHDNTLNTIENMASELRISQNHLKKIIHKLSKGQFIKTFRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNAF 118 GG++L + I + DV+ TE + EC S +CP +C L S++ KA NAF Sbjct: 61 EGGIKLAKKPKDIGLADVLLYTEINTDFVECLKHNSKHTECPYQINCNLKSIIHKAKNAF 120 Query: 119 FDVLTQYSIECLVR 132 +YS++ L++ Sbjct: 121 MQEFQKYSLQDLLQ 134 >gi|167836361|ref|ZP_02463244.1| Rrf2 family protein [Burkholderia thailandensis MSMB43] Length = 165 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL + +T+ +VV+ TE F + CFA SH+ +C + C L V A Sbjct: 61 NGGLRLNAQSATLTVGEVVRKTENDFALVGCFAGEAESHR-NCVIQSVCRLKGVFVAARE 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L + S + + Sbjct: 120 AFFAELDKHTIGELAQPASQLATLLG 145 >gi|114331398|ref|YP_747620.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas eutropha C91] gi|114308412|gb|ABI59655.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha C91] Length = 154 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L+Y + + + I++I++ IS + KI+ L + G +ET+RG+ Sbjct: 1 MKLTNYSDYALRILIYLGLKREKLSTITEISDCYRISRNHVVKIVHHLGQLGYLETLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R + I I +V++ TE S + ECF+ C + SC L S++ +AL AF Sbjct: 61 HGGIRLARAPEMINIGEVMRHTETSMDLVECFSDQNA-CIICDSCVLRSIIAEALAAFMT 119 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL Y++ L+ + +KK Sbjct: 120 VLDSYTLADLMVPKRQLKK 138 >gi|226226792|ref|YP_002760898.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226089983|dbj|BAH38428.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 152 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 71/127 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +D +R LM + D + IA +S L KI+Q L + G VETVRGR Sbjct: 1 MRLTRFSDNALRCLMVLGLEPDALIPVHSIAVRMNMSHEHLVKIVQRLAELGYVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R IT+ +V+ TE++ + ECF CP+ +C L +L +AL+AF Sbjct: 61 NGGVRLVRSPQHITLGALVRETEDNLALVECFEPESNTCPIAPACVLARMLDEALSAFLA 120 Query: 121 VLTQYSI 127 VL Y++ Sbjct: 121 VLDGYTL 127 >gi|209519545|ref|ZP_03268338.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] gi|209500024|gb|EEA00087.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] Length = 176 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 3/147 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYALRVLLYLAVRGEGLSTIHDISQAYGISKNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ DVV+ATE F + C + C + C L L+ A A Sbjct: 61 NGGLRLGAQSPALTVGDVVRATESDFALVGCLPDRQGVQRHCVITTQCRLRGALQAANQA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 F L +++I + + S + + G Sbjct: 121 FLAELDRHTIGEVAQPHSPLAALLGLG 147 >gi|56962129|ref|YP_173852.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|81367334|sp|Q5WL64|NSRR_BACSK RecName: Full=HTH-type transcriptional regulator nsrR gi|56908364|dbj|BAD62891.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 149 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R+L+Y A+ + + + Q+A+ IS L K+ L K G++ET++G Sbjct: 1 MQLTSYTDYSLRLLLYLALQPKHKLSSVKQVADIYRISYNHLTKVTHELGKLGLIETIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I I +VVK TE++ + ECF C L +C L VL +AL A+ Sbjct: 61 RNGGIRLAKEPEEINIGEVVKQTEDNLELVECFNRETNTCILNPACRLKGVLHEALAAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY+++ LV N ++ + Sbjct: 121 QVLEQYTVKDLVLNEDDLRALL 142 >gi|256823249|ref|YP_003147212.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796788|gb|ACV27444.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis DSM 16069] Length = 148 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL++ A+ D + I +I+++ IS L K++ L K G +ETVRG+ Sbjct: 1 MHITRYTDYSLRVLLFLALEKDRLSTIQEISDSYNISSNHLMKVVHALNKKGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I I +V+ E + ECF+ C + CGL +VL +AL F Sbjct: 61 NGGMRLRMDPEDIRIGVLVREMEPDMSLVECFSPDN-KCVITPVCGLKAVLGEALKNFLA 119 Query: 121 VLTQYSI 127 L +Y++ Sbjct: 120 TLDKYTL 126 >gi|254476056|ref|ZP_05089442.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] gi|214030299|gb|EEB71134.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] Length = 137 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 71/129 (55%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA ++D S+IAE C ISE L +++ L + G + T RGR GG+ L RPA +I Sbjct: 1 MYCAANSDRLVTKSEIAERCNISENHLAQVINQLAQLGYLRTQRGRNGGMSLGRPAGKIG 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I DV + E + + ECFA CPLV +C L L A AF+ L ++E LV + Sbjct: 61 IGDVFRDVEGTVPMVECFADADNTCPLVSACRLRVALADAAQAFYRSLDGITLEALVCDN 120 Query: 135 SSIKKIFNA 143 + +F A Sbjct: 121 DELFALFQA 129 >gi|167587014|ref|ZP_02379402.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia ubonensis Bu] Length = 165 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118 GG+RL + ++T+ VV+ TE F + CFA + C + C L VL A +AF Sbjct: 61 NGGLRLFPHSTRLTVGQVVRETENDFALVGCFAGGESQRACVIEPHCRLKGVLAAARDAF 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 F L ++++ L + S + + Sbjct: 121 FAELDRHTLGELAQPASPLAALLG 144 >gi|85707148|ref|ZP_01038235.1| rrf2 family protein [Roseovarius sp. 217] gi|85668307|gb|EAQ23181.1| rrf2 family protein [Roseovarius sp. 217] Length = 100 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 63/100 (63%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IR+LM+CA +ND ++IAE C SE L +I+ L + G + T RGR Sbjct: 1 MRITKRTNIAIRLLMFCASNNDRLVTKAEIAERCNTSESHLAQIINRLSQLGFLYTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GGVRL RP +IT+ DV + E++ VAECFA CP Sbjct: 61 TGGVRLGRPMTEITVGDVFRQLEQNTPVAECFADVDNTCP 100 >gi|331699002|ref|YP_004335241.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953691|gb|AEA27388.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia dioxanivorans CB1190] Length = 148 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ D+ +RVLM+ + I IA A +S L K+++ + AG+VET RGR Sbjct: 1 MRHTQHADFALRVLMFLRVAPGRRGSIGDIALAHRVSRNHLDKVVRRMSTAGLVETSRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R IT+ DV+++ E+ F V EC + C + G CG +V AL+++F Sbjct: 61 GGGVRLVRDPASITVGDVIRSMEDDFAVVECLGPARY-CRVAGVCGARTVFAAALDSYFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL + +++ + N ++ Sbjct: 120 VLDRATLDDVAANDGGLRGALG 141 >gi|78066618|ref|YP_369387.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|77967363|gb|ABB08743.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] Length = 171 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAF 118 GG+RL + Q+T+ VV+ATE F + CF++ C + C L VL A +AF Sbjct: 61 NGGLRLFPESLQLTVGQVVRATESDFALVGCFSAEGESRGCVIEPQCRLKGVLAAARDAF 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 F L ++++ LV + + + Sbjct: 121 FAELDRHTLGELVEPAAPLVALLG 144 >gi|110347078|ref|YP_665896.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283189|gb|ABG61249.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp. BNC1] Length = 153 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+LMY A D I + A A +S+ L K+ L + G ++ VRGR Sbjct: 1 MRLTSFSDYALRMLMYAATAGDRLITIEEAARAFSVSKTHLNKVANTLTRGGYLKAVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R + I I DV++ TE F + ECFA+ C L SC L+ +L +A+ +F + Sbjct: 61 SGGLMLDRRPETIRIGDVIRMTEPDFALVECFATGN-QCILTNSCKLSGMLGEAMASFHE 119 Query: 121 VLTQYSI 127 L +Y++ Sbjct: 120 TLDRYTL 126 >gi|296157751|ref|ZP_06840585.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] gi|295891997|gb|EFG71781.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] Length = 166 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIRDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL +T+ ++V+ATE F + CF + + C + C L L A +A Sbjct: 61 NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++I + + + + Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145 >gi|171058160|ref|YP_001790509.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775605|gb|ACB33744.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii SP-6] Length = 165 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LMY + I+++A+A ISE L KI L AG +ETVRG+ Sbjct: 1 MRLTTMTDYALRLLMYVGQRPERLCTIAEVAQAYGISEAHLMKITHQLGLAGWIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL QI + ++V++ E F + EC AS C L G C LT + AL AF + Sbjct: 61 GGGMRLALEPAQINLGELVRSVEPDFALVECLASGNA-CSLTGRCRLTGIFDDALAAFME 119 Query: 121 VL 122 L Sbjct: 120 KL 121 >gi|114319388|ref|YP_741071.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114225782|gb|ABI55581.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola ehrlichii MLHE-1] Length = 162 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY RVL+Y I IA+ IS L K++ L G +ETVRG+ Sbjct: 1 MRLTVYSDYAFRVLVYLGTRPGERATIRGIADCYGISRNHLTKVVHQLGSQGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL R + I + +V++ TEE F + EC S + C + G C L VL +A AF Sbjct: 61 GGGLRLTRDPEGIGVGEVLRDTEEGFGLVECMRPSGRGMCRIEGGCRLRGVLGEATRAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++ L+ NR + ++ Sbjct: 121 AVLDRYTLADLLENRDELAQLL 142 >gi|91783441|ref|YP_558647.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687395|gb|ABE30595.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia xenovorans LB400] Length = 166 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I++A IS L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISDAYGISRNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL +T+ ++V+ATE F + CF + + C + C L L A +A Sbjct: 61 NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++I + + + + Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145 >gi|145300994|ref|YP_001143835.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853766|gb|ABO92087.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida subsp. salmonicida A449] Length = 150 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + DVV E +C + +C L G C + +LR+A+NAF Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117 Query: 120 DVLTQYSIECLVRN 133 +VL +Y++ VR+ Sbjct: 118 EVLGEYTLADAVRD 131 >gi|332978237|gb|EGK14968.1| transcriptional repressor NsrR [Psychrobacter sp. 1501(2011)] Length = 171 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 28/166 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT +DY +R LMY A+ P+R I+ IA + IS L K++ L + G +E Sbjct: 1 MRLTNYSDYALRTLMYLAV---IPDRDTLATITDIANSYQISRSHLTKVIHQLAQIGYIE 57 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--------------------SH 95 ++RG+ GG+RL +PA I + +V++ TE F V CFA + Sbjct: 58 SIRGKNGGIRLAKPAADIILGEVIRQTEPDFHVVPCFALLPSRTKPKENQVESLNTPMKY 117 Query: 96 KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 C + C L SV +A AF V+ Y++ +V N + +I Sbjct: 118 SESCAITPVCKLKSVFAEATQAFLKVMDDYTLADIVNNEEELWQIL 163 >gi|330990437|ref|ZP_08314396.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329762474|gb|EGG78959.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 207 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/93 (46%), Positives = 58/93 (62%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y +H D I ++AEA ISE L K++ L + G V+T+RGR Sbjct: 1 MRLTLYTDYALRTLLYLGVHADRRVSIREVAEAYGISENHLVKVIHHLGRGGFVDTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG+ L RPADQI + DVV+ TEE + C + Sbjct: 61 GGGLMLARPADQINVGDVVRHTEEDMALVGCMS 93 >gi|117619511|ref|YP_854778.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560918|gb|ABK37866.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 150 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + DVV E +C + +C L G C + +LR+A+NAF Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117 Query: 120 DVLTQYSIECLVRN 133 +VL +Y++ VR+ Sbjct: 118 EVLGEYTLADAVRD 131 >gi|172060807|ref|YP_001808459.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993324|gb|ACB64243.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MC40-6] Length = 172 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + ++T+ VV+ATE F + CF++ + C + C L VL A +A Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++ L S + + Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145 >gi|146279260|ref|YP_001169418.1| hypothetical protein Rsph17025_3229 [Rhodobacter sphaeroides ATCC 17025] gi|145557501|gb|ABP72113.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 144 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK +DY +RVL+Y A I + I + A IS+ L K++ L+ AG ++ RG Sbjct: 1 MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMSLIHAGFLQGTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL RPA++I + +V++ATE F + ECF C + C L + KA+ +F Sbjct: 61 RTGGFRLARPANEIRLGEVLRATETDFALVECFQQGNA-CCISRPCRLPPIFAKAVKSFM 119 Query: 120 DVLTQYSI 127 D L Q++I Sbjct: 120 DTLDQFTI 127 >gi|114777146|ref|ZP_01452166.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1] gi|114552667|gb|EAU55127.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1] Length = 153 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 7/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT+ TDY +RVL+Y + YP R I++I++A I+ L K++ L + G + T Sbjct: 1 MQLTQYTDYSLRVLIYLGL---YPERRCTITEISDAYDINRNHLVKVVHSLSQDGWITTT 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG+ GG+ L QI I V++ TE + ECF + CP+ +C L L +A A Sbjct: 58 RGKSGGMVLSFNPKQINIGAVIQGTEPHMNLLECFDNKYNTCPITSACVLKHALYQARKA 117 Query: 118 FFDVLTQYSIE-CLVRNRSSIKKIFNAG 144 F +VL+ Y++E LV+ I + N G Sbjct: 118 FMNVLSNYTLEDVLVQPEILISLLGNVG 145 >gi|300022521|ref|YP_003755132.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] gi|299524342|gb|ADJ22811.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 145 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY D I +IA+ ISE L K++ L + G V+T+RGR Sbjct: 1 MRLTVHSDYALRVLMYLGAREDRLATIQEIAKVYAISENHLMKVVNKLARHGFVKTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA+ +TI +V++ EE F V ECF + C + SC L LR+A++AF Sbjct: 61 GGGLRLGRPAEDLTIGEVLRVVEEDFHVVECFGESNM-CRISQSCRLRLALRRAIDAFLA 119 Query: 121 VLTQYSIECLVRNRSSI 137 L ++++ ++ NR+SI Sbjct: 120 ELDEWTLADILSNRNSI 136 >gi|330817194|ref|YP_004360899.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia gladioli BSR3] gi|327369587|gb|AEA60943.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia gladioli BSR3] Length = 156 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ ++ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRSEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRKA 114 GG+R+ + ++TI +VV+ATE F + CF H+ C + C L VL A Sbjct: 61 NGGLRINANSGRLTIGEVVRATESDFALVGCFGGEGQGVEHR-SCVIEPHCRLKGVLYAA 119 Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137 AFF L +++I L R S + Sbjct: 120 REAFFSELDRHTIAELSRPASPL 142 >gi|307729564|ref|YP_003906788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584099|gb|ADN57497.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1003] Length = 169 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + I I+EA +S+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGQGLSTIQDISEAYGVSKNHLMKVVQQLSELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL +T+ ++V+ATE F + C + C + C L +VL A +A Sbjct: 61 NGGLRLAERTRSLTVGEIVRATESDFALVACLPDQNGERRACVITPQCRLRNVLEAARHA 120 Query: 118 FFDVLTQYSIE 128 F L +++I+ Sbjct: 121 FLAELDRHTID 131 >gi|145600842|ref|YP_001164918.1| transcriptional repressor NsrR [Yersinia pestis Pestoides F] gi|162419331|ref|YP_001605273.1| transcriptional repressor NsrR [Yersinia pestis Angola] gi|165926673|ref|ZP_02222505.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. F1991016] gi|165936529|ref|ZP_02225097.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. IP275] gi|166011855|ref|ZP_02232753.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. E1979001] gi|166214016|ref|ZP_02240051.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. B42003004] gi|167400661|ref|ZP_02306170.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418774|ref|ZP_02310527.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423241|ref|ZP_02314994.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170026007|ref|YP_001722512.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis YPIII] gi|186893791|ref|YP_001870903.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis PB1/+] gi|294502487|ref|YP_003566549.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003] gi|108777100|gb|ABG19619.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Nepal516] gi|108781808|gb|ABG15866.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Antiqua] gi|145212538|gb|ABP41945.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Pestoides F] gi|162352146|gb|ABX86094.1| nitrite-sensitive repressor NsrR [Yersinia pestis Angola] gi|165915645|gb|EDR34254.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. IP275] gi|165921296|gb|EDR38520.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. F1991016] gi|165989214|gb|EDR41515.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. E1979001] gi|166204811|gb|EDR49291.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962768|gb|EDR58789.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050029|gb|EDR61437.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057411|gb|EDR67157.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752541|gb|ACA70059.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis YPIII] gi|186696817|gb|ACC87446.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis PB1/+] gi|262360517|gb|ACY57238.1| hypothetical protein YPD4_0329 [Yersinia pestis D106004] gi|262364465|gb|ACY61022.1| hypothetical protein YPD8_0332 [Yersinia pestis D182038] gi|294352946|gb|ADE63287.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003] Length = 154 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 14 VQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 73 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 74 KNGGIRLGKPADQILIGDVVRQMEPLTLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 129 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ S + K+ Sbjct: 130 KELDNYTLADMVKDNSPLYKLL 151 >gi|329119509|ref|ZP_08248194.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC BAA-1200] gi|327464442|gb|EGF10742.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC BAA-1200] Length = 153 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL Y A++++ I+ IAE IS+ L K++ LVK G +++VRG+ Sbjct: 1 MYLTQQTDYALRVLAYAAVNSEELVNIATIAEVYGISKSHLMKVVTALVKGGFLDSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A+ I + DVV+ E V EC + C L C L SVL A AF + Sbjct: 61 GGGLRLRRQAELIRLGDVVRHMEPMKLV-ECMGAGN-QCLLTSCCLLASVLNDAGKAFLE 118 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++++ L+ N+ + +++ Sbjct: 119 HLDKFTLADLI-NKPTFDMLYS 139 >gi|21957349|gb|AAM84224.1|AE013666_4 hypothetical protein y0636 [Yersinia pestis KIM 10] gi|45435245|gb|AAS60805.1| Predicted transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] Length = 158 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 18 VQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 77 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 78 KNGGIRLGKPADQILIGDVVRQMEPLTLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 133 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ S + K+ Sbjct: 134 KELDNYTLADMVKDNSPLYKLL 155 >gi|218290218|ref|ZP_03494372.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|218239693|gb|EED06884.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] Length = 140 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT TDY +RVL+Y A D ++ +IA IS L K + L + G +ETVRG Sbjct: 1 MNLTLFTDYALRVLIYTANQPDGKLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL PA I + DVV+A E+ F V CFA+ C L+ C L L +A++AF Sbjct: 61 RGGGMRLALPARDIRVGDVVRAVEDDFAVVGCFANDS--CVLLPGCRLKRALGEAVDAFL 118 Query: 120 DVLTQYSI 127 + L +Y++ Sbjct: 119 ETLNRYTL 126 >gi|330831524|ref|YP_004394476.1| Rrf2 family protein [Aeromonas veronii B565] gi|328806660|gb|AEB51859.1| Rrf2 family protein [Aeromonas veronii B565] Length = 150 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFGISRNHVVKIVHQLGIKGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + DVV E +C + +C L G C + +LR+A+NAF Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117 Query: 120 DVLTQYSIECLVRN 133 +VL +Y++ VR+ Sbjct: 118 EVLGEYTLADAVRD 131 >gi|77361335|ref|YP_340910.1| hypothetical protein PSHAa2419 [Pseudoalteromonas haloplanktis TAC125] gi|76876246|emb|CAI87468.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 149 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 5/145 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M++++ TDY +RVL+Y AI+ + I +IAE +S+ L K++Q L G + + R Sbjct: 1 MNISRFTDYSLRVLIYLAINKNTNEIKTIKEIAECYGVSKNHLMKVVQQLSAQGYINSTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG++L A+QI I +V++ E + ECF + C + +C L VL A+ +F Sbjct: 61 GKNGGIKLNHAAEQINIGQLVRSFEGKSALVECFGENNF-CIITPACQLKKVLSHAIESF 119 Query: 119 FDVLTQYSIECLVR--NRSSIKKIF 141 F+ L QY++ L+ N++ + KI Sbjct: 120 FNCLDQYTLADLINGPNKAVLSKIL 144 >gi|238764698|ref|ZP_04625642.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC 33638] gi|238697094|gb|EEP89867.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC 33638] Length = 141 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138 >gi|332160028|ref|YP_004296605.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664258|gb|ADZ40902.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862089|emb|CBX72255.1| HTH-type transcriptional repressor nsrR [Yersinia enterocolitica W22703] Length = 141 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138 >gi|30248932|ref|NP_841002.1| hypothetical protein NE0928 [Nitrosomonas europaea ATCC 19718] gi|30138549|emb|CAD84839.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC 19718] Length = 151 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L Y + + + I++IA+ IS + KI+ L + G V+T+RG+ Sbjct: 1 MRLTNYSDYALRILTYLGLKREELSTITEIADCYGISRNHVVKIVHHLGQLGYVDTLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I +V++ TE S + ECF S++ C + SC L + + +AL+AF Sbjct: 61 NGGIRLAHAPEKINIGEVIRHTETSMDIVECF-SNQNSCIIGCSCVLRTAISEALSAFMA 119 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL Y++ L+ R + + Sbjct: 120 VLDDYTLADLIAPRRQLSR 138 >gi|238787545|ref|ZP_04631343.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii ATCC 33641] gi|238724332|gb|EEQ15974.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii ATCC 33641] Length = 141 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138 >gi|294143081|ref|YP_003559059.1| Rrf2 family protein [Shewanella violacea DSS12] gi|293329550|dbj|BAJ04281.1| Rrf2 family protein [Shewanella violacea DSS12] Length = 152 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT TD+GIR LMY AI D RI++I + +S + KI+ L K G +ET+R Sbjct: 1 MQLTHYTDFGIRTLMYLAIQPDRETLFRIAEITQVFDLSPNHVSKIVHRLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL + I I +V+ E S +C + C L SC L VL +A+ A+ Sbjct: 61 GKSGGFRLGKSPQDINIGQLVRVLENSLAPIDCSKPY---CRLTPSCQLRGVLAEAVTAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL QYS+ +V N + K+ Sbjct: 118 LTVLDQYSLADIVSNNRELIKLL 140 >gi|123440766|ref|YP_001004758.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|189030891|sp|A1JIS1|NSRR_YERE8 RecName: Full=HTH-type transcriptional repressor nsrR gi|122087727|emb|CAL10512.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 141 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138 >gi|115351837|ref|YP_773676.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170703406|ref|ZP_02894182.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|115281825|gb|ABI87342.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria AMMD] gi|170131682|gb|EDT00234.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] Length = 172 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + ++T+ VV+ATE F + CF++ + C + C L VL A +A Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++ L S + + Sbjct: 121 FFAELDGHTLGELAEPASPLATLLG 145 >gi|77465342|ref|YP_354845.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126464803|ref|YP_001045916.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221369349|ref|YP_002520445.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] gi|77389760|gb|ABA80944.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126106614|gb|ABN79144.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|221162401|gb|ACM03372.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] Length = 145 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 6/130 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETV 57 M LTK +DY +RVL+Y A D R+ I E I S+ L K++ L+ AG ++ Sbjct: 1 MRLTKFSDYALRVLLYAASIED--GRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGT 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG RL RPA +I + +V++ATE F + ECF C + C L +L KA+++ Sbjct: 59 RGRTGGFRLARPASEIRLGEVLRATETDFALVECFQQGNA-CCISRPCRLPPILAKAVSS 117 Query: 118 FFDVLTQYSI 127 F D L +++I Sbjct: 118 FMDTLDEFTI 127 >gi|238795296|ref|ZP_04638875.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC 29909] gi|238725381|gb|EEQ16956.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC 29909] Length = 141 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+QI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPANQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ S + K+ Sbjct: 117 NELDNYTLADMVKDNSPLYKLL 138 >gi|264678558|ref|YP_003278465.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Comamonas testosteroni CNB-2] gi|262209071|gb|ACY33169.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni CNB-2] Length = 148 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 TDY +R+LM+ A + IS++A+A ISE L K+ L G +ETVRG+ GG+RL Sbjct: 2 TDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGKGGGMRL 61 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 R QI I V++ E F + ECF + C L G C L +L+ AL++F L ++ Sbjct: 62 AREPQQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMAHLDGFT 120 Query: 127 IECLV 131 + L+ Sbjct: 121 LADLI 125 >gi|157377604|ref|YP_001476204.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319978|gb|ABV39076.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis HAW-EB3] Length = 151 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY AI D RIS+I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGIRTLMYLAIQPDREELFRISEITEVFELSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL I + +V+ E S +C + C SC L VL A+ A+ Sbjct: 61 GKSGGFRLGMSPKDINVGKLVRVLENSLAPIDCSKPY---CRFTPSCQLKGVLADAVAAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 V+ Y++E +V N+ +K++ Sbjct: 118 LAVIDAYTLEDIVSNKDELKQLL 140 >gi|291279503|ref|YP_003496338.1| BadM/Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754205|dbj|BAI80582.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter desulfuricans SSM1] Length = 134 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK DY +RV+++ A + D S+++E C I + FL KILQ L K G++++ +G Sbjct: 1 MKLTKAADYALRVMLFIASSDKDKTFMRSELSEICDIPDSFLGKILQTLAKNGLLDSSKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG +L + ++IT+ D+V A + ++ EC ++ C C + +VL K N F Sbjct: 61 KKGGFKLSKSPEEITLYDIVTAIDGDVYINECIDKPEV-CKRSDICKINNVLAKIKNNFV 119 Query: 120 DVLTQYSIECLVRNR 134 L Y+++ L+ N+ Sbjct: 120 KELKNYTLKDLLTNK 134 >gi|154685398|ref|YP_001420559.1| YhdE [Bacillus amyloliquefaciens FZB42] gi|154351249|gb|ABS73328.1| YhdE [Bacillus amyloliquefaciens FZB42] Length = 144 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A H+D + I +IA+ IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+ Sbjct: 61 RGGGIRLGMTPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++ LV+N+ I ++ Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLL 142 >gi|148652572|ref|YP_001279665.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571656|gb|ABQ93715.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp. PRwf-1] Length = 175 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 26/164 (15%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT +DY +R LMY A+ P+R I+ IA + IS L KI+ L + G +E Sbjct: 1 MRLTNYSDYALRTLMYLAV---IPDRNTLATITDIANSYQISRSHLTKIIHQLAQIGYIE 57 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----------------- 98 ++RG+ GG+RL + A I + +V++ TE F V CF + D Sbjct: 58 SIRGKNGGIRLAKAAQDINLGEVIRQTEPDFHVVPCFPAPGCDAQSRSNSKSKAQPKPAD 117 Query: 99 -CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 C + C L SV +A AF V+ Y++ +V N ++ +I Sbjct: 118 YCAITPVCKLKSVFAEATGAFLKVMDNYTLADIVANEEALWQIL 161 >gi|91205424|ref|YP_537779.1| putative transcriptional regulator [Rickettsia bellii RML369-C] gi|91068968|gb|ABE04690.1| Putative transcriptional regulator [Rickettsia bellii RML369-C] Length = 136 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 69/134 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A I +IAE IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P I + D+++ E + + ECF C + SC +++A NAF Sbjct: 61 GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 120 Query: 121 VLTQYSIECLVRNR 134 L Y++E + N+ Sbjct: 121 TLNNYTLEDAINNK 134 >gi|332288684|ref|YP_004419536.1| iron-responsive transcriptional regulator [Gallibacterium anatis UMN179] gi|330431580|gb|AEC16639.1| iron-responsive transcriptional regulator [Gallibacterium anatis UMN179] Length = 148 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TDY +RVL+Y A H D + I +IA A ISE L K++ L K ++ ++RG+ Sbjct: 1 MKLSTFTDYNLRVLLYLAAHQDRLSTIQEIALAYNISENHLMKVIHHLAKNDLILSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R ++ + +V+ E+ + EC K C + SC L L A N+F++ Sbjct: 61 GGGIRLHRAPSELNLGKIVRLAEQKGPIVECLGD-KNKCCIAPSCRLPLALNDAFNSFYE 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L++Y++ ++ + ++++ + Sbjct: 120 TLSKYTLADVMIDGATMQPLL 140 >gi|329115699|ref|ZP_08244418.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] gi|326694969|gb|EGE46691.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] Length = 155 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 15/149 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R L++ D + I +IAE ISE + K++ L K G +ET+RGR Sbjct: 6 MKLNLQTDYALRALIFLGSRTDRLSSIREIAETYRISETHMVKVIHRLGKGGFIETLRGR 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKAL 115 GG+RL R A+ I I VV EE + +C SHK C L+ SC L VL + + Sbjct: 66 NGGIRLGRLAETIRIGAVVSYMEEDMSLLDCL-SHKTCEREGTCILMPSCRLRGVLSETM 124 Query: 116 NAFFDVLTQYSI-------EC--LVRNRS 135 A VL +Y++ EC L+RN + Sbjct: 125 QAMMSVLDRYTLADMITPFECERLIRNET 153 >gi|304311681|ref|YP_003811279.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] gi|301797414|emb|CBL45634.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] Length = 166 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 13/153 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR------------ISQIAEACCISELFLFKILQPL 48 M +T TDY +RVLMY A+ + PN I +IA A IS L K++ L Sbjct: 1 MRITTFTDYTLRVLMYLAL-KEKPNEPSESRESVALATIPEIAAAYGISSNHLMKVVHHL 59 Query: 49 VKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108 + G +E++RG+ GG+RL DQI + V++A+E + + EC C + C L Sbjct: 60 ARTGTIESIRGKGGGIRLAAAPDQIRLGQVIRASESNGPIVECLGEEPGVCKIAPVCRLA 119 Query: 109 SVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 ++L A A + L QY++ L R ++ + Sbjct: 120 NILGTAFEALYASLDQYTLADLTRQSKPLQGLL 152 >gi|299131984|ref|ZP_07025179.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2] gi|298592121|gb|EFI52321.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2] Length = 149 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT +DY +R+LMY A+ D R I + AEA IS L K+ L +AG ++ V Sbjct: 1 MRLTNFSDYALRILMYAAVVPD--GRLITIEETAEAYGISRAHLMKVANQLTRAGYMKAV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG+ L + D+I + DV++ATE F + EC + C + C L L +AL A Sbjct: 59 RGRSGGLTLAKRPDRIRLSDVLRATEPDFALVECMTADN-RCMISPRCRLRGALNEALAA 117 Query: 118 FFDVLTQYSIECLV 131 F + L Y++ L+ Sbjct: 118 FLETLDGYTLADLI 131 >gi|296116952|ref|ZP_06835554.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976518|gb|EFG83294.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 159 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/131 (47%), Positives = 77/131 (58%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y IH D I +IA+A ISE L KI+ L + G VET+RGR Sbjct: 10 MRLTLHTDYALRTLIYLGIHTDRLTSIHEIAQAYGISENHLIKIIHRLGRGGFVETLRGR 69 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117 RGG+RL RPA I I DVV+ TEE + C A C LVG C L +L +AL + Sbjct: 70 RGGLRLGRPAHDILIGDVVRYTEEDLGLVSCMQAPAEGVRPCLLVGGCSLRGILNEALGS 129 Query: 118 FFDVLTQYSIE 128 F VL Y++E Sbjct: 130 FMSVLDSYTLE 140 >gi|157827027|ref|YP_001496091.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389] gi|157802331|gb|ABV79054.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 149 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 69/134 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A I +IAE IS L K++ L + G + + +G+ Sbjct: 14 MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 73 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P I + D+++ E + + ECF C + SC +++A NAF Sbjct: 74 GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 133 Query: 121 VLTQYSIECLVRNR 134 L Y++E + N+ Sbjct: 134 TLNNYTLEDAINNK 147 >gi|254504883|ref|ZP_05117034.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] gi|222440954|gb|EEE47633.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] Length = 144 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +D+ +R+LM + +D P + ++ +++ + KI+ L KAG +ET RGR Sbjct: 9 MRLSQASDFALRLLMAIS-QSDAPQTVDKLTAQLGLAKSHVMKIVAQLAKAGYLETTRGR 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ + AD I I DVV+ E V C CP + C L + +A AF D Sbjct: 68 GGGIRIAKEADDIRIGDVVRLIEPDLGVVACLKDEPASCPFLPRCALKGAMARATEAFLD 127 Query: 121 VLTQYSIECLVRNRSSI 137 L + ++ ++ I Sbjct: 128 SLNEQTLGSILAGTQKI 144 >gi|163734089|ref|ZP_02141530.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161392625|gb|EDQ16953.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 149 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+L+ + S+IA +SE L K+ LV+ G V + RGR Sbjct: 1 MQLDKFTDYALRILITLVVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP ++I + +VV+ V ECF ++K C ++ +CGL L +A AFF Sbjct: 61 NGGLTLARPPERILVGEVVRTMTRKEHVVECFGTNK-SCLILPACGLRQPLAEAQEAFFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L Y++ + ++R S+ + N+ Sbjct: 120 TLDHYTLADVTQSRHSLGALLNS 142 >gi|294670388|ref|ZP_06735270.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307852|gb|EFE49095.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 149 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL Y A +++ I+ IAE IS L K+ LVK G +++VRG+ Sbjct: 1 MYLTQQTDYALRVLTYAAANSEGLVNIATIAEVYGISRSHLMKVATALVKGGFLDSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R ++I I DVV+ E V EC + C L C L+++L +A AF Sbjct: 61 GGGLRLSRSEEEIVIGDVVRHMEPMKLV-ECMGADN-RCLLTSCCRLSNILNEAGQAFLA 118 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++++ L+ N+ ++ ++ Sbjct: 119 HLDKFTLSDLI-NQPTLDMLY 138 >gi|238750077|ref|ZP_04611580.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC 43380] gi|238711621|gb|EEQ03836.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC 43380] Length = 141 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA++I I DVV+ E V C + C + +C L S L +A+ +F Sbjct: 61 KNGGIRLGKPANEIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKSALNQAVKSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D L Y++ +V++ + + K+ Sbjct: 117 DELDNYTLADMVQDNTPLYKLL 138 >gi|119385748|ref|YP_916803.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376343|gb|ABL71107.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 145 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 67/128 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDYG+RVLM A + P QIA IS+ L K++ L G V + RGR Sbjct: 1 MRLATFTDYGLRVLMRLAGAPEKPISTGQIAREFAISQHHLAKVVSDLGLGGFVRSERGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA +IT+ VV+ E F + ECF + +C L C L L A AF Sbjct: 61 SGGLRLMRPAHEITLGQVVRHLERKFAIVECFRADGGECVLRPRCRLRPQLSAAREAFMA 120 Query: 121 VLTQYSIE 128 L + ++E Sbjct: 121 ELDRTTLE 128 >gi|313672577|ref|YP_004050688.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939333|gb|ADR18525.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 132 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 81/134 (60%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +TK +DY +RV+ + A N Y R ++++E C + + FL KILQ LVK+GI+E+ R Sbjct: 1 MKITKASDYALRVVGFFATAEKNRYYMR-NELSEICNVPDSFLGKILQNLVKSGILESER 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+RGG ++ + +++T+ D++++ E + EC C + G+C + ++L + Sbjct: 60 GKRGGFKMSKNPEEVTVYDIIRSVEGDVVINECLVEGNT-CKISGNCKIHNILDQVRCNL 118 Query: 119 FDVLTQYSIECLVR 132 + L ++SI LVR Sbjct: 119 INELKRFSISDLVR 132 >gi|294084466|ref|YP_003551224.1| BadM/Rrf2 family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664039|gb|ADE39140.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Puniceispirillum marinum IMCC1322] Length = 149 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 71/127 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R LM A++ + IS+IAE IS+ L K++ L G + + GR Sbjct: 1 MRLRLQTDYALRALMCLAVNTERRVMISEIAEQQSISKNHLIKVIHRLTGLGFINSQPGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA QI I D+++ E +CF C L+ C L +VL AL+AF+ Sbjct: 61 SGGLWLSRPAAQINIGDLIRQLEADSVFLDCFEGGAGRCRLIPQCQLKAVLADALDAFYA 120 Query: 121 VLTQYSI 127 VL ++++ Sbjct: 121 VLDRFTL 127 >gi|229541297|ref|ZP_04430357.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] gi|229325717|gb|EEN91392.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] Length = 144 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +DY +R L+Y A + I +IA+A IS+ L KI L + G+V+TVRG Sbjct: 1 MRLTHYSDYALRELIYLASLEEGKLASIKEIADAYNISKNHLMKITYELSQLGLVKTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + +I + +++ TE+ F + EC C + CGL VL +AL A+ Sbjct: 61 RGGGICLNKHPREINVGKLIRITEDDFKLVECMEDGASACIISPVCGLKHVLNEALVAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++E LV++ S +++ Sbjct: 121 RVLDKYTLEDLVKDPLSYRQLL 142 >gi|50122544|ref|YP_051711.1| transcriptional repressor NsrR [Pectobacterium atrosepticum SCRI1043] gi|81644039|sp|Q6D125|NSRR_ERWCT RecName: Full=HTH-type transcriptional repressor nsrR gi|49613070|emb|CAG76521.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 141 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C SH+ C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITAACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138 >gi|52842742|ref|YP_096541.1| hypothetical protein lpg2534 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629853|gb|AAU28594.1| hypothetical protein lpg2534 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 143 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + +C L SVL +A AF Sbjct: 60 NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 +L QY++ ++ N S + + Sbjct: 120 ILEQYTLADVLHNPSELSALL 140 >gi|171317873|ref|ZP_02907050.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] gi|171096942|gb|EDT41812.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] Length = 172 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALNA 117 GG+RL + ++T+ VV+ATE F + CF++ C + C L VL A +A Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATESDFALVGCFSADGGASRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++ L S + + Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145 >gi|238797601|ref|ZP_04641098.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC 43969] gi|238718598|gb|EEQ10417.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC 43969] Length = 141 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+QI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPAEQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138 >gi|110678994|ref|YP_682001.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109455110|gb|ABG31315.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 147 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LM A+ S+IA +SE L K+ LV+ G V + RGR Sbjct: 1 MQLDKFTDYALRILMTLAVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R ++I + VV+ V ECF + K C ++ SCGL L +A AFF Sbjct: 61 NGGLTLARAPERILVGAVVRTMTRKAHVVECFGTDK-SCLILPSCGLRQPLAEAQEAFFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L Y++ + R+R + + N Sbjct: 120 TLDHYTLADVTRSRHGLGALLN 141 >gi|328544253|ref|YP_004304362.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326413995|gb|ADZ71058.1| Putative transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 155 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 74/141 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CA+++ R ++IA AC SE + +++ L + G + T RGR Sbjct: 1 MRLTMRTNLAMRTLMFCAVNSARTVRKAEIARACNASENHIAQVIHLLSQKGYLRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I + V ++ E AECF CPL +C L + A+ AF+ Sbjct: 61 NGGIRLGMAMEEINVGTVFRSFEADVPFAECFQGVDNRCPLTAACRLRIAIVGAVGAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L S+ LV + +I Sbjct: 121 ALDGLSLADLVAGNRELHRIL 141 >gi|54298536|ref|YP_124905.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris] gi|148360004|ref|YP_001251211.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby] gi|296108175|ref|YP_003619876.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99 Alcoy] gi|53752321|emb|CAH13753.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris] gi|148281777|gb|ABQ55865.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby] gi|295650077|gb|ADG25924.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99 Alcoy] Length = 143 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + +C L SVL +A AF Sbjct: 60 NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSI 137 +L QY++ ++ N S + Sbjct: 120 ILEQYTLADVLHNPSEL 136 >gi|167856368|ref|ZP_02479095.1| sec-independent translocase [Haemophilus parasuis 29755] gi|167852506|gb|EDS23793.1| sec-independent translocase [Haemophilus parasuis 29755] Length = 147 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TDY RVLMY A H D + I Q+AE+ +S+ L K++ + K G + T RG+ Sbjct: 1 MHLSKFTDYAFRVLMYLAHHQDEVHTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ + + +V++ + + + +C + C L C L SVL AL F+ Sbjct: 61 GGGIRISSLILSMAVGEVIRTLQGNPRLIDCNSP---ACILKPHCHLKSVLDHALEHFYQ 117 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L QYS+ + ++ IK I Sbjct: 118 YLNQYSVSECIGSQKVIKGIL 138 >gi|284006631|emb|CBA71892.1| transcriptional regulator [Arsenophonus nasoniae] Length = 140 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D I+++ +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPKDKMTNITEVTNVYGVSRNHMVKIINQLSRVGLVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PADQI I +VV+ E V C + + C + +C L +L +A++ F Sbjct: 61 KNGGIYLGKPADQIRIGEVVRLLEPLALV-NCGSDY---CHITSACRLKQILNQAIDHFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +Y++ L++N + K+ Sbjct: 117 NELDKYTLADLIKNNEPLYKLL 138 >gi|161524598|ref|YP_001579610.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350646|ref|YP_001946274.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198118|ref|ZP_03571164.1| putative transcriptional regulator [Burkholderia multivorans CGD2M] gi|221208391|ref|ZP_03581394.1| putative transcriptional regulator [Burkholderia multivorans CGD2] gi|221215143|ref|ZP_03588110.1| putative transcriptional regulator [Burkholderia multivorans CGD1] gi|160342027|gb|ABX15113.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans ATCC 17616] gi|189334668|dbj|BAG43738.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221165079|gb|EED97558.1| putative transcriptional regulator [Burkholderia multivorans CGD1] gi|221171804|gb|EEE04248.1| putative transcriptional regulator [Burkholderia multivorans CGD2] gi|221182050|gb|EEE14451.1| putative transcriptional regulator [Burkholderia multivorans CGD2M] Length = 161 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG+RL + ++T+ +VV+ATE F + CF C + C L VL A +AF Sbjct: 61 NGGLRLFPASLKLTVGEVVRATETDFALVGCFVAGDDTRGCVIEPQCRLKGVLAAARDAF 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 F L ++++ L ++ + Sbjct: 121 FAELERHTLAELAEPAPALVSLLG 144 >gi|15613620|ref|NP_241923.1| hypothetical protein BH1057 [Bacillus halodurans C-125] gi|8480599|sp|Q9RC41|NSRR_BACHD RecName: Full=HTH-type transcriptional regulator nsrR gi|5822814|dbj|BAA83958.1| YHDE [Bacillus halodurans] gi|10173672|dbj|BAB04776.1| BH1057 [Bacillus halodurans C-125] Length = 146 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R+L+Y A+ D + + Q+A IS L K+ L K G++ET++G Sbjct: 1 MQLTSYTDYSLRLLLYLALQPKDKLSSVKQVATIYNISYNHLTKVTYELGKLGLIETIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I I VVK TE++ + ECF C L C L VL +AL A+ Sbjct: 61 RNGGIRLAKAPEEINIGAVVKQTEDNLELVECFNHETNTCILNPVCRLKGVLHEALTAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY+++ L+ N ++ + Sbjct: 121 RVLEQYTLKDLLTNEDELQALL 142 >gi|253689808|ref|YP_003018998.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259514610|sp|C6DE26|NSRR_PECCP RecName: Full=HTH-type transcriptional repressor nsrR gi|251756386|gb|ACT14462.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 141 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C SH+ C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 QELDQYTLADMVKENPPLYKLL 138 >gi|238786347|ref|ZP_04630282.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC 43970] gi|238712746|gb|EEQ04823.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC 43970] Length = 141 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + I+Q+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTNITQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+QI I DVV+ E V C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPAEQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138 >gi|261822840|ref|YP_003260946.1| transcriptional repressor NsrR [Pectobacterium wasabiae WPP163] gi|261606853|gb|ACX89339.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium wasabiae WPP163] Length = 141 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C SH+ C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138 >gi|238027044|ref|YP_002911275.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia glumae BGR1] gi|237876238|gb|ACR28571.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia glumae BGR1] Length = 156 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 7/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114 GG+R+ + +T+ +VV+A E F + CF +H+ C + C L VL A Sbjct: 61 NGGLRMNPASATLTVGEVVRAGESDFALVGCFGGEGEAIAHR-GCVIEPHCRLKGVLAAA 119 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142 +AFF L +++I L + + + Sbjct: 120 RDAFFAELDRHTIADLTHPGAQLARALG 147 >gi|85705587|ref|ZP_01036685.1| Putative transcriptional regulator [Roseovarius sp. 217] gi|85670012|gb|EAQ24875.1| Putative transcriptional regulator [Roseovarius sp. 217] Length = 138 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 72/133 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R+LM A + +++A+ +S L KI+Q L + G++ET RG Sbjct: 1 MRLTSFTDYGLRMLMRMASEPERAYSSAELADEFGLSRNHLAKIMQRLSRGGLIETRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +PA ++ + +V+ EE + ECFA+ DC + G C L + LR A AF Sbjct: 61 GGGAVLAKPASELRLGAIVRLLEEGQPLVECFAADSGDCSIDGQCRLKARLRSAEAAFLA 120 Query: 121 VLTQYSIECLVRN 133 L ++ + N Sbjct: 121 DLEGSTLAAIALN 133 >gi|237749286|ref|ZP_04579766.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229380648|gb|EEO30739.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 139 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++TDY +R+LMY A H + I++IAE IS L KI+ L + +E++RG Sbjct: 1 MQLTQQTDYALRILMYAAAHPERLVNITEIAELYGISRSHLTKIVANLASSQYLESIRGN 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL +PA +I I ++++ E + +C + + C + +C L V +A +AF Sbjct: 61 KGGIRLNKPASEINIGEIIRRF-EPLAIVDCMSKTR-SCVITPNCKLKHVFFEATDAFLK 118 Query: 121 VLTQYSI 127 QY++ Sbjct: 119 TFDQYTL 125 >gi|321314662|ref|YP_004206949.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis BSn5] gi|291483405|dbj|BAI84480.1| hypothetical protein BSNT_01615 [Bacillus subtilis subsp. natto BEST195] gi|320020936|gb|ADV95922.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis BSn5] Length = 146 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 5/144 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDY +RVL++ A P +S QIAE IS+ L K++ L + G VET+ Sbjct: 1 MKLTNYTDYSLRVLIFLAAER--PGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETI 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG+RL + I I +VV+ TE+ F + ECF ++K C + CGL VL +AL A Sbjct: 59 RGRGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLA 118 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 + VL +Y++ LV+N+ I K+ Sbjct: 119 YLAVLDKYTLRDLVKNKEDIMKLL 142 >gi|16078003|ref|NP_388819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. subtilis str. 168] gi|221308776|ref|ZP_03590623.1| hypothetical protein Bsubs1_05178 [Bacillus subtilis subsp. subtilis str. 168] gi|221313099|ref|ZP_03594904.1| hypothetical protein BsubsN3_05114 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318025|ref|ZP_03599319.1| hypothetical protein BsubsJ_05058 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322299|ref|ZP_03603593.1| hypothetical protein BsubsS_05159 [Bacillus subtilis subsp. subtilis str. SMY] gi|6136719|sp|O07573|NSRR_BACSU RecName: Full=HTH-type transcriptional regulator nsrR gi|2226194|emb|CAA74483.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633273|emb|CAB12777.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. subtilis str. 168] Length = 146 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 5/144 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDY +RVL++ A P +S QIAE IS+ L K++ L + G VET+ Sbjct: 1 MKLTNYTDYSLRVLIFLAAER--PGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETI 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG+RL + I I +VV+ TE+ F + ECF ++K C + CGL VL +AL A Sbjct: 59 RGRGGGIRLGMDPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLA 118 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 + VL +Y++ LV+N+ I K+ Sbjct: 119 YLAVLDKYTLRDLVKNKEDIMKLL 142 >gi|227112379|ref|ZP_03826035.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227325972|ref|ZP_03829996.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 141 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C SH+ C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138 >gi|54295371|ref|YP_127786.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens] gi|53755203|emb|CAH16696.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens] Length = 143 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + C L SVL +A AF Sbjct: 60 HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 +L QY++ ++ N S + + Sbjct: 120 ILEQYTLADVLHNPSELSALL 140 >gi|307611397|emb|CBX01061.1| hypothetical protein LPW_27621 [Legionella pneumophila 130b] Length = 143 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYTISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + C L SVL +A AF Sbjct: 60 HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 +L QY++ ++ N S + + Sbjct: 120 ILEQYTLADVLHNPSELSALL 140 >gi|88812644|ref|ZP_01127891.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231] gi|88790060|gb|EAR21180.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231] Length = 145 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MY ++ + + IS+IAE IS L K++ L + G VETVRG+ GG+RL I Sbjct: 1 MYLSLKENELSTISEIAERYAISRNHLMKVVYELGRLGYVETVRGKHGGMRLRHSPASIN 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +VV+ TE + ECF+S C L SC L VLR+AL AF VL +YS+ L+ + Sbjct: 61 LGEVVRRTENDMALVECFSSQNY-CRLTPSCVLHGVLREALQAFLAVLDRYSLADLLEPK 119 Query: 135 SSIKKIF 141 + + Sbjct: 120 QKLANLL 126 >gi|78485131|ref|YP_391056.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363417|gb|ABB41382.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira crunogena XCL-2] Length = 156 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 5/140 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TDY +RVLMY A+ + D +I I+E I + L K++ L K +++TVR Sbjct: 12 MQLTKYTDYALRVLMYLAMQDEPDTKVQIKTISEKFGIPKNHLMKVVHQLGKENMIKTVR 71 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+ LC+P I + V++ E + C K C + C L L KA+ AF Sbjct: 72 GKHGGIMLCQPPSDIIVGHVIRKFEMTLSPVNC---EKPLCQIQEICLLKPALFKAMEAF 128 Query: 119 FDVLTQYSIECLVRNRSSIK 138 L QY++ + +N+ +K Sbjct: 129 LSTLDQYTLADITKNQPCLK 148 >gi|148260837|ref|YP_001234964.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326404231|ref|YP_004284313.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146402518|gb|ABQ31045.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum JF-5] gi|325051093|dbj|BAJ81431.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 139 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 65/125 (52%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LT TDYG+R LM AI D S +A +S L KIL LV G + + RG G Sbjct: 5 LTNYTDYGLRALMLLAIEPDRVQSTSALATRLDVSRHHLAKILMDLVAGGYLLSSRGPTG 64 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 GVRL +P QI I DVV+ E + ECF + C L+ +C L L +A +AF + L Sbjct: 65 GVRLAKPPGQIRIGDVVRYLERDQAMVECFRADGGQCNLLPACRLRQTLNRAKDAFIETL 124 Query: 123 TQYSI 127 S+ Sbjct: 125 NGKSL 129 >gi|332560946|ref|ZP_08415264.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] gi|332274744|gb|EGJ20060.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] Length = 143 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 6/128 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETVRG 59 +TK +DY +RVL+Y A D R+ I E I S+ L K++ L+ AG ++ RG Sbjct: 1 MTKFSDYALRVLLYAASIED--GRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRG 58 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL RPA +I + +V++ATE F + ECF C + C L +L KA+++F Sbjct: 59 RTGGFRLARPASEIRLGEVLRATETDFALVECFQQGNA-CCISRPCRLPPILAKAVSSFM 117 Query: 120 DVLTQYSI 127 D L +++I Sbjct: 118 DTLDEFTI 125 >gi|311105547|ref|YP_003978400.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8] gi|310760236|gb|ADP15685.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8] Length = 145 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY D P ++ +IA+ +S L K+ + + G V T R Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIADRFSVSRNHLVKVAHFMAQQGWVSTSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + D+++ E+ + +C + C L GSC L+ VL + L AF Sbjct: 61 GKGGGLRLSRSAGDYRLGDLIRQLEQQGPLIDC---REPPCALDGSCRLSGVLAQTLQAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 ++ L Y++ LVR+ ++ Sbjct: 118 YEALNGYTLADLVRDPTA 135 >gi|114765192|ref|ZP_01444336.1| rrf2 family protein [Pelagibaca bermudensis HTCC2601] gi|114542467|gb|EAU45494.1| rrf2 family protein [Roseovarius sp. HTCC2601] Length = 145 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 69/127 (54%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M+CA + S+IA+ C SE L +++ L + G + T RGR GG+ L RPA+QI Sbjct: 1 MHCAANTGRLVTKSEIAKRCNASENHLAQVINQLAQLGYLHTQRGRNGGLELSRPAEQIR 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I DV +A E +AECFA CPL +C L L A NAF+ L +++ L+ + Sbjct: 61 IGDVFRALEAPVPLAECFADVDNTCPLTEACRLKIALSDAANAFYATLDPITLDTLICDN 120 Query: 135 SSIKKIF 141 + + I Sbjct: 121 APLMDIL 127 >gi|219871543|ref|YP_002475918.1| transcriptional regulator [Haemophilus parasuis SH0165] gi|219691747|gb|ACL32970.1| transcriptional regulator [Haemophilus parasuis SH0165] Length = 147 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TDY RVLMY A H D I Q+AE+ +S+ L K++ + K G + T RG+ Sbjct: 1 MHLSKFTDYAFRVLMYLAHHQDELRTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ + + +V++ + + + +C + C L C L SVL AL F+ Sbjct: 61 GGGIRISSLILSMPVGEVIRTLQGNPRLIDCNSP---ACILKPHCHLKSVLDHALEHFYQ 117 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L QYSI + ++ IK I Sbjct: 118 YLNQYSISECIGSQKLIKGIL 138 >gi|254498832|ref|ZP_05111541.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351940|gb|EET10766.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 143 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + I++I+ A IS L KI+ L + GIV+T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIGVRQKICT-INEISIAYSISRNHLIKIIHRLSQIGIVKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + D+I + ++ E +F + CF +K C + +C L ++L +A AF Sbjct: 60 NGGIEMAISPDKINLKQLILKLEPNFDLVPCFNQNKEPCRIASACKLQTILYEAQKAFLT 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL ++++ ++ N++++ ++ Sbjct: 120 VLEKFTLADIMHNQAALHQLL 140 >gi|311067422|ref|YP_003972345.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus 1942] gi|310867939|gb|ADP31414.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus 1942] Length = 143 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A H + I QIAE IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLATQHTEDLCNIKQIAETYSISKNHLMKVIYQLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + CGL V +AL A+ Sbjct: 61 RGGGIRLGMAPEDINIGEVVRKTEDDFNIVECFDSGKNLCIISPVCGLKHVFNEALLAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++ LV+N+ I ++ Sbjct: 121 SVLDKYTLGDLVKNKQDIMRLL 142 >gi|83310417|ref|YP_420681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945258|dbj|BAE50122.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 140 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 1/128 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ H+ I++IAE IS+ L K++ L ++G +ETVRG+ Sbjct: 1 MRLTLHTDYALRVLVHVGRHDGDLVTINEIAECYGISKNHLTKVVHQLGRSGYLETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GGVRL R + + + + ++ TEE F + C D C L C L L+AFF Sbjct: 61 YGGVRLLRQPEDVKLGEFIRETEEDFALVRCMRCDTPDECRLNAGCIARDALSSGLSAFF 120 Query: 120 DVLTQYSI 127 VL Y++ Sbjct: 121 KVLDGYTL 128 >gi|163856927|ref|YP_001631225.1| putative DNA-binding protein [Bordetella petrii DSM 12804] gi|163260655|emb|CAP42957.1| putative conserved DNA-binding protein [Bordetella petrii] Length = 145 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY +D P I +IA +S + K++ L + G V T R Sbjct: 1 MQLTRYTDFGLRVLMYLTQGDDRAVPATIPEIAARFNVSRNHMVKVVHFLARQGWVATTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL P + D+V+A E + C + C L G C L+ VL +L F Sbjct: 61 GKGGGLRLAHPPSAYRVGDLVRALEHQGALINCA---EPPCALNGLCRLSGVLADSLQVF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 +D L ++++ LVR+ ++ Sbjct: 118 YDALNRHTLADLVRSPTA 135 >gi|296332358|ref|ZP_06874819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673638|ref|YP_003865310.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii str. W23] gi|296150276|gb|EFG91164.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411882|gb|ADM37001.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii str. W23] Length = 146 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 5/144 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDY +RVL++ A + P +S QIAE IS+ L K++ L + G VET+ Sbjct: 1 MKLTNYTDYSLRVLIFLAA--ERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETI 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG+RL + I I +VV+ TE+ F + ECF +K C + CGL VL +AL A Sbjct: 59 RGRGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDVNKNLCVISPVCGLKHVLNEALMA 118 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 + VL Y++ LV+N+ I K+ Sbjct: 119 YLAVLDNYTLRDLVKNKEDIMKLL 142 >gi|126732149|ref|ZP_01747951.1| CDG1D protein [Sagittula stellata E-37] gi|126707438|gb|EBA06502.1| CDG1D protein [Sagittula stellata E-37] Length = 150 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH +K TDY +RV +Y H+ IS+IA A +S+ L K++ LV+ +++ RGR Sbjct: 1 MHFSKFTDYALRVCLYLGAHDGRVVPISEIARAHSLSQNNLMKVVNMLVEGNFLKSTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L R D+I + DV + E + +C + C L GSCGLT L +A F+ Sbjct: 61 AGGVQLARSPDRILVGDVARFMEGDAQMVDCSS-----CILRGSCGLTGALAEAKILFYQ 115 Query: 121 VLTQYSI 127 L + SI Sbjct: 116 TLNRNSI 122 >gi|293604765|ref|ZP_06687165.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC 43553] gi|292816934|gb|EFF76015.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC 43553] Length = 145 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLM D P+ I +IA +S L K++ + + G + TVR Sbjct: 1 MQLTRFTDFGLRVLMCLTQCRDRPSPVTIPEIAGRFEVSRNHLVKVVHFMSQRGWISTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + D+++ E+ + +C H+ C L G+C L VL + LNAF Sbjct: 61 GKGGGLRLARDACAYRVGDLIRELEQQGPLIDC---HEPPCALDGACRLAGVLAQTLNAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 +D L Y++ LVR+ ++ Sbjct: 118 YDALNGYTLADLVRDPTA 135 >gi|317407279|gb|EFV87255.1| hypothetical protein HMPREF0005_05535 [Achromobacter xylosoxidans C54] Length = 145 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY D P I +IA +S L K++ + + G V T R Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIAARFDLSRNHLVKVVHFMSQRGWVSTAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+ L RPA + D+V+ E+ + +C + C L G+C L+ VL + L AF Sbjct: 61 GKGGGLALARPAADYRLGDLVRELEQQGPLIDC---REPPCALDGACRLSGVLAQTLQAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 ++ L YS+ LVR+ ++ Sbjct: 118 YEALNGYSLADLVRDPTA 135 >gi|189425987|ref|YP_001953164.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter lovleyi SZ] gi|189422246|gb|ACD96644.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ] Length = 158 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A H P +I I+ IS +L +I Q L KAGI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYHTGTAPAQIQDISRRQLISPRYLEQIFQNLKKAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113 +GG L R DQIT+L+V++ATE+ + +C K +CP G+C +V + Sbjct: 61 PQGGYTLARTPDQITVLEVIRATEQDALLVDCAGQGKKTRRRKNECPFEGNCVTQTVWKD 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + ++ + ++E L Sbjct: 121 ANDLLAELFGKLTLETL 137 >gi|154253130|ref|YP_001413954.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154157080|gb|ABS64297.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 145 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/141 (41%), Positives = 85/141 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+L Y A+ D IS++AE+ IS L K+ L +AG VET+RGR Sbjct: 1 MRLTLHTDYALRLLTYLALKPDEIATISEVAESYSISRNHLTKVAHELGRAGFVETLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A +I I DVV+A EE F + ECFA+ C + +C L VL++AL+A+ Sbjct: 61 GGGLRLARAAGKIGIGDVVRAMEEDFCIVECFAAETDRCRIGPACRLKRVLKQALDAWLA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL ++ LV ++++ Sbjct: 121 VLDDTTLADLVERPQPLRRLL 141 >gi|160895967|ref|YP_001561549.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361551|gb|ABX33164.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans SPH-1] Length = 146 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LM+ A H I++IA+A ISE L K+ L G + TVRG+ Sbjct: 1 MRLTLMTDYALRLLMHVARHPGRLCTIAEIAQAHAISEAHLMKVTHQLALRGWIVTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL I + DVV+ E + ECF + C L C L VL AL++F Sbjct: 61 GGGMRLAHAPADIGLGDVVRGMEPDLAIVECFTGTSPPACTLAQDCRLAGVLGGALDSFM 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 L +++ L+ +S+ Sbjct: 121 AHLDGFTLADLLPAPASLP 139 >gi|302879682|ref|YP_003848246.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302582471|gb|ADL56482.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 132 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D +R L+ C + P I+++AE C IS+ L K++ LV A +V + RGR Sbjct: 1 MQLTVSSDSALRTLI-CLGKKNAPVTIAEVAEQCQISKSTLMKVVMTLVGANLVVSERGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + A I++ VV+ E S + EC CPL+ C L VL A FF Sbjct: 60 NGGISLAQDAKDISVGSVVRLMENSLALVECMKDGTSTCPLLPKCRLKHVLYTAQENFFS 119 Query: 121 VLTQYSIECLVRN 133 L S+ L+R+ Sbjct: 120 TLDNTSLADLLRD 132 >gi|238755908|ref|ZP_04617236.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC 29473] gi|238705867|gb|EEP98256.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC 29473] Length = 141 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPPGQMTSISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C C + +C L VL +A+ F Sbjct: 61 KNGGIRLGKPAENIRIGDVVRELEPLSLVNCCSDF----CHITPACRLKQVLHQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ + + K+ Sbjct: 117 KELDNYTLADMVKDNAPLYKLL 138 >gi|317491645|ref|ZP_07950081.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921192|gb|EFV42515.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] Length = 144 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT TD+G+R LMY A Y R S +IA IS + K++ LV G + VR Sbjct: 1 MKLTTYTDFGLRALMYLA-SMPYGQRTSVGEIAGHYDISRNHMVKVVAQLVGLGYIHAVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+ L +PA I I V++A E + +C H C L+ C L + L+ + AF Sbjct: 60 GKGGGIELGKPAADINIGQVIRALESNLNGIDC---HSPGCKLIKICQLQAALKVGMEAF 116 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 + Y++ LV NR I I Sbjct: 117 LTAMENYTLADLVSNRGEIIAILG 140 >gi|53803301|ref|YP_114917.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] gi|53757062|gb|AAU91353.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] Length = 150 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+ +RVL+Y + P I +IAE IS L K++ L AG++ T+R Sbjct: 1 MQLTQFTDFSLRVLIYL-VRLPEPGMATIPEIAEYYRISRNHLVKVVNTLANAGLLVTMR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL RPAD ITI +VV+ TE + + ECF C + C L ++L +A F Sbjct: 60 GKGGGLRLARPADTITIAEVVRLTEPNMNLVECFDPKASHCRIDRGCFLKAILYEARKDF 119 Query: 119 FDVLTQYSIECLVR 132 L ++++ R Sbjct: 120 LAALERHTLADAAR 133 >gi|296116983|ref|ZP_06835584.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976465|gb|EFG83242.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 167 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y D I IA+ ISE L K++ L + G + T RGR Sbjct: 1 MRLTLYTDYALRTLLYLGAKPDTRVAIHDIAQTYDISENHLVKVVHKLGRGGFIVTKRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R I I D+V+ TEE + C K C L G C L ++ +ALNAF Sbjct: 61 NGGLLLARAPQDIRIGDIVRYTEEDMGIVAC-NQEKGSCRLAGVCRLQGLMGEALNAFMS 119 Query: 121 VLTQYSI 127 VL + ++ Sbjct: 120 VLDRRTL 126 >gi|46201636|ref|ZP_00054636.2| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 140 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ N I++IAE IS+ L K++ L ++G +ETVRG+ Sbjct: 1 MRLTLHTDYALRVLVHVGRQNGDLVTINEIAERYGISKNHLTKVVHQLGRSGYLETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GGVRL R + + + ++ TE+ F + C D C L C L L+AFF Sbjct: 61 YGGVRLLRQPEDVKLGQFIRETEDDFALVRCMRCDSPDECRLNAGCIARDALSSGLSAFF 120 Query: 120 DVLTQYSIECLVRN 133 VL Y++ ++ N Sbjct: 121 KVLDGYTLADMLDN 134 >gi|50086222|ref|YP_047732.1| hypothetical protein ACIAD3227 [Acinetobacter sp. ADP1] gi|49532198|emb|CAG69910.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 145 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY + ++ P I+ IA +S+ L KI+ + K G + T RG+ Sbjct: 4 MQLNKFTDYALRILMYVSRPSETPYTIADIANDLRVSQNHLVKIVHFMGKQGWIITTRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L A + + D+V++ + + EC H C L CGL +L +AL F+ Sbjct: 64 GGGLKLNPKALDLKLGDIVRSLQGDHQIVEC---HTPPCVLRSHCGLKGILDQALEQFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L QY ++ ++R + I Sbjct: 121 SLDQYQLKDVLRAPPTYSPI 140 >gi|169632345|ref|YP_001706081.1| hypothetical protein ABSDF0414 [Acinetobacter baumannii SDF] gi|169151137|emb|CAO99806.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 148 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K G + T+RG Sbjct: 4 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQGWIITIRGN 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L + +S+ Sbjct: 121 SLDQYTLGEVLQQPKSA 137 >gi|84393609|ref|ZP_00992361.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01] gi|84375750|gb|EAP92645.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01] Length = 147 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y AI+N + I IA + IS+ L KI+Q L G + RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG++L C P+ QI I +V+ E+ + ECF C + +C L ++ +A F+ Sbjct: 61 NGGLKLSCHPS-QINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFY 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L YS++ L+ S K Sbjct: 119 KSLDAYSLQDLLGEGHSYK 137 >gi|171914811|ref|ZP_02930281.1| Putative transcriptional regulator [Verrucomicrobium spinosum DSM 4136] Length = 151 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+L+Y H D ++AE +S L K+ + L + G + + RG Sbjct: 1 MQLTYHTDYALRLLIYLLSHPDRNVSTREMAEFYGVSVNHLVKVAKSLTQGGWLVSSRGI 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L + + + D+V+ TE + V ECF CP+ SC L +L +A AFFD Sbjct: 61 GGGVMLAKHTPEAKVGDIVRYTENTDIV-ECFQPKTNTCPIHRSCDLKPILFQARRAFFD 119 Query: 121 VLTQYSIECLVRNRSSI 137 VL +++ L R+ + + Sbjct: 120 VLDSFTVRDLARHPNEL 136 >gi|86148482|ref|ZP_01066771.1| hypothetical protein MED222_02502 [Vibrio sp. MED222] gi|218708942|ref|YP_002416563.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32] gi|85833722|gb|EAQ51891.1| hypothetical protein MED222_02502 [Vibrio sp. MED222] gi|218321961|emb|CAV17962.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32] Length = 147 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y AI+N + I IA + IS+ L KI+Q L G + RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG++L C P+ QI I +V+ E+ + ECF C + +C L ++ +A F+ Sbjct: 61 NGGLKLSCHPS-QINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFY 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L YS++ L+ S K Sbjct: 119 KCLDAYSLQDLLGEGHSYK 137 >gi|157368684|ref|YP_001476673.1| transcriptional repressor NsrR [Serratia proteamaculans 568] gi|189030889|sp|A8G8V5|NSRR_SERP5 RecName: Full=HTH-type transcriptional repressor nsrR gi|157320448|gb|ABV39545.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 141 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I + DVV+A E V C ++ C + +C L VL++ + F Sbjct: 61 KNGGIRLGKPAETIRLGDVVRALEPLSLV-NCNSTF---CHITPACRLKQVLQQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +++ +V + S+ K+ Sbjct: 117 EELDSHTLADMVEDNPSLYKLL 138 >gi|260433137|ref|ZP_05787108.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260416965|gb|EEX10224.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 142 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R+LM A + +++AE +S L K++ L +AG +ET RG Sbjct: 1 MRLTTFTDFGLRILMRMAGAPERAFSTAELAEEFQVSRAHLAKVISALARAGYLETRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +QI + DVV E + ECFA+ C L SC L L++A F + Sbjct: 61 GGGAMLARPPEQIRLGDVVGLLESGQAIVECFAADGSACTLSPSCLLKERLKRAEAVFLE 120 Query: 121 VLTQYSI-ECLVR 132 L + ++ +C+ R Sbjct: 121 DLNRSTLADCIYR 133 >gi|332139491|ref|YP_004425229.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549513|gb|AEA96231.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype'] Length = 150 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 76/136 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ RVL+Y A+ + + S+IA+A +S L K++ L+ G + +GR Sbjct: 1 MKINTFTNLAFRVLIYLALRKNQTVKTSEIADAYFVSFNHLKKVITLLIDQGYIIGTKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + A+ I I +V + T E +AECFAS C + +C L ++L+ A + F Sbjct: 61 GGGIRLAKEANLINIGEVFRLTIEDVALAECFASPTNKCVISPTCRLKTILQDAADKFIS 120 Query: 121 VLTQYSIECLVRNRSS 136 L Q+++ LV++R Sbjct: 121 ELDQFTLHDLVKDREG 136 >gi|294651640|ref|ZP_06728944.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|292822489|gb|EFF81388.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 150 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I+ IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + ++V+ + + EC C L CGL +L +AL +F+ Sbjct: 61 GGGLRLNPEAKSLKLGEIVRTLQGHQHIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRN 133 L QY++ ++++ Sbjct: 118 SLNQYTLGEVIQH 130 >gi|254518111|ref|ZP_05130167.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911860|gb|EEH97061.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 132 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+L+K TDY R L+Y A + D + ++A+ ISE L KI+ L K +V +++GR Sbjct: 1 MYLSKFTDYSFRALVYLAENRDKLCTVEELAKKLEISEHHLKKIIHKLAKTDLVISMKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFF 119 GG++L I + +VV+ TE++ +A+CF+ CP + S C L ++ ++L+AF Sbjct: 61 TGGLKLGLEPQDINLGEVVRITEDNLNIAQCFSKEDC-CPFITSGCKLKGIMNESLSAFL 119 Query: 120 DVLTQYSIECLV 131 ++Y+++ L+ Sbjct: 120 HEFSRYTLQDLL 131 >gi|294634461|ref|ZP_06712997.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685] gi|291092171|gb|EFE24732.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685] Length = 140 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A+ ISQ+ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDFGLRALVYMAALPEGQMTSISQVTEVYGVSRNHMVKIINQLSRAGFVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL RPA +I I DVV+ E V C S C + +C L VL++A AF Sbjct: 61 KNGGIRLGRPASEIRIGDVVRELEPLTLV-NCSQSF---CHITPACRLKPVLQRATEAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L + ++ L+ + S + K+ Sbjct: 117 AELDKCTLADLIEHNSPLYKLL 138 >gi|150016720|ref|YP_001308974.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903185|gb|ABR34018.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 130 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 1/128 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+L+K +DY R+L+Y A + D + ++A ISE L KI+ L K V + +GR Sbjct: 1 MNLSKFSDYAFRILIYLAKNQDKICTVEELASNLEISEHHLKKIVHRLGKTEYVISTKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L I + ++ TEES ++ECF+S K C C L ++L ++N+F D Sbjct: 61 NGGLKLGLEPKDINLGKILIITEESISISECFSSAKHTCS-TSKCKLKAILSSSINSFVD 119 Query: 121 VLTQYSIE 128 ++Y++E Sbjct: 120 EFSKYTLE 127 >gi|56475710|ref|YP_157299.1| rf2 family transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56311753|emb|CAI06398.1| predicted transcriptional regulator,rf2 family [Aromatoleum aromaticum EbN1] Length = 211 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT+ TDY R L++ + P IS ++E I L KI+ L + G +E + Sbjct: 57 MQLTRYTDYAFRTLIFLGLQK--PAELVTISIVSEHFDIPRNHLVKIVNHLARLGYIEAL 114 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG+ GG+RL RPA +I + VV+A EE+ C H+ C ++ SC L ++ +A A Sbjct: 115 RGKGGGIRLNRPATKINLRTVVEAVEETLTPINC---HEPTCRILPSCRLVGIMDEAQEA 171 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 F VL +YS+ L ++ ++K+ Sbjct: 172 FLAVLGKYSLSDLQQDPQRLEKLL 195 >gi|320539671|ref|ZP_08039335.1| putative DNA-binding transcriptional regulator [Serratia symbiotica str. Tucson] gi|320030283|gb|EFW12298.1| putative DNA-binding transcriptional regulator [Serratia symbiotica str. Tucson] Length = 141 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D ISQ+ E +S + KI+ L + G V +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISQVTEVYGVSRNHMVKIINQLSRVGFVTAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +P + I + DVV+A E V C H C + +C L VL + + F Sbjct: 61 KNGGIRLSKPGETIRLGDVVRALEPLSLV-NC---HSDFCHISPACRLNQVLHQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +++ +V S + K+ Sbjct: 117 EELNNHTLADMVEGNSLLYKLL 138 >gi|293393207|ref|ZP_06637522.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582] gi|291424353|gb|EFE97567.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582] Length = 141 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPKDKMTSISEVTEVYGVSRNHMVKIINQLSRIGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+A E V C C + +C L VL++ + F Sbjct: 61 KNGGIRLGQPAASIRIGDVVRALEPLSLV-NCSGDF---CHITPACRLKQVLQQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + + + K+ Sbjct: 117 AELDNYTLADMVEDNAPLYKLL 138 >gi|317493575|ref|ZP_07951996.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918518|gb|EFV39856.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] Length = 141 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + D I+Q+ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDFGLRALIYMASLPADQMTNITQVTDVYGVSRNHMVKIINQLSRAGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I I DVV+ E V C SH+ C + +C L VL+KA AF Sbjct: 61 KNGGIRLGRAAKDIRIGDVVRELEPLTLV-NC--SHEF-CHITTACRLKQVLQKATQAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Q ++ L+ S + K+ Sbjct: 117 AELDQCTLADLIEENSPLYKLL 138 >gi|262370584|ref|ZP_06063909.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262314384|gb|EEY95426.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 149 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 3/127 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY + P+ I+++A+A +SE L KI+ + K + T RGR Sbjct: 1 MQLNKFTDYALRILMYVSQPKALPHTIAELAQALQVSENHLMKIVHFMAKQQWIITARGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + ++V+ + + EC C L +CGL +L +AL+ F+ Sbjct: 61 GGGIRLNPETLHLRLGEIVRVLQADQNIVECNTP---PCVLRSNCGLKGILDQALDQFYH 117 Query: 121 VLTQYSI 127 L QY++ Sbjct: 118 SLDQYTL 124 >gi|33415325|gb|AAQ18178.1| putative 15.3 kDa negative regulatory protein [Rhodobacter capsulatus] Length = 140 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL TD+ +R L++ A + ++ IS L K++Q LV G T++G Sbjct: 1 MHLLASTDFALRALLFLATDPERLVNTETMSRDLGISRNHLQKVVQALVAGGFARTIKGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGGVRL PA +I I VV+ EE + CFA C + CGL VL A + ++D Sbjct: 61 RGGVRLAHPATEIRIGAVVRHFEEHQPIVACFAPEG-QCVIEPICGLKGVLAGAQSQYYD 119 Query: 121 VLTQYSI-ECLVRNR 134 L Y++ +CL R R Sbjct: 120 FLNGYTLADCLRRPR 134 >gi|224825697|ref|ZP_03698801.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224601921|gb|EEG08100.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 150 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 74/131 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+MY A+ + I++IA+A IS L K++ L + G + TVRG+ Sbjct: 1 MRLTAFTDYCLRVMMYSALAGERLVTINEIAQAYGISASHLTKVVFFLGQHGYLTTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL Q+ + +V+A E + ECF C + +C L +VL A AF+ Sbjct: 61 GGGMRLADDPQQVNLGKLVRAAETDNVLVECFDPQHSQCRIASACRLMNVLHAAQEAFYG 120 Query: 121 VLTQYSIECLV 131 L+++++ L+ Sbjct: 121 ELSRHTLADLL 131 >gi|167719226|ref|ZP_02402462.1| putative transcriptional regulator [Burkholderia pseudomallei DM98] Length = 162 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL + +T+ +VV+ TE F + CFA SH+ C + +C L V A Sbjct: 61 NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHR-SCVIQSACRLRGVFAAARE 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L + S + + Sbjct: 120 AFFAELDKHTIGELAQPASQLATLLG 145 >gi|262275147|ref|ZP_06052958.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia hollisae CIP 101886] gi|262221710|gb|EEY73024.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia hollisae CIP 101886] Length = 144 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 9/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIA---EACCISELFLFKILQPLVKAGIVETV 57 M LT TDYG+R LMY A+ P ++ I E +S + KI+ + +AG VE V Sbjct: 1 MQLTSFTDYGLRALMYLAMLP--PGELTSITVVTEKYGVSRNHMVKIIHRMSQAGFVEAV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG+ GG+RL +PA+ I I DV+++ E V C +C + +C L + + KAL A Sbjct: 59 RGKNGGIRLGKPAELIVIGDVIRSLEPLQLV-NCAPQ---NCHITPACRLKTAIAKALTA 114 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 F + +Y++ +V ++ + Sbjct: 115 FLAEMDKYTLHDMVSGNDDLQHLL 138 >gi|254252225|ref|ZP_04945543.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158] gi|124894834|gb|EAY68714.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158] Length = 173 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 61/95 (64%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+T+RGR Sbjct: 3 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTIRGR 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG+RL + Q+T+ VV+ATE F + CF++ Sbjct: 63 NGGLRLFPESLQLTVGQVVRATENDFALVGCFSAE 97 >gi|53719117|ref|YP_108103.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|53723605|ref|YP_103037.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|76811401|ref|YP_333785.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121599434|ref|YP_993187.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|124383404|ref|YP_001026037.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126442087|ref|YP_001059260.1| Rrf2 family protein [Burkholderia pseudomallei 668] gi|126450910|ref|YP_001080694.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126452205|ref|YP_001066527.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134277214|ref|ZP_01763929.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|167003463|ref|ZP_02269249.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|167738224|ref|ZP_02410998.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167815414|ref|ZP_02447094.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167823823|ref|ZP_02455294.1| putative transcriptional regulator [Burkholderia pseudomallei 9] gi|167845364|ref|ZP_02470872.1| putative transcriptional regulator [Burkholderia pseudomallei B7210] gi|167893908|ref|ZP_02481310.1| putative transcriptional regulator [Burkholderia pseudomallei 7894] gi|167902361|ref|ZP_02489566.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC 13177] gi|167910597|ref|ZP_02497688.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|167918624|ref|ZP_02505715.1| putative transcriptional regulator [Burkholderia pseudomallei BCC215] gi|217421524|ref|ZP_03453028.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|237812583|ref|YP_002897034.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|238563651|ref|ZP_04610659.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|242317014|ref|ZP_04816030.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254177455|ref|ZP_04884110.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|254179517|ref|ZP_04886116.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|254189092|ref|ZP_04895603.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|254197503|ref|ZP_04903925.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|254199984|ref|ZP_04906350.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|254206317|ref|ZP_04912669.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|254260786|ref|ZP_04951840.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] gi|254297396|ref|ZP_04964849.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|254358271|ref|ZP_04974544.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|52209531|emb|CAH35484.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52427028|gb|AAU47621.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|76580854|gb|ABA50329.1| Transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121228244|gb|ABM50762.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|124291424|gb|ABN00693.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126221580|gb|ABN85086.1| Rrf2 family protein [Burkholderia pseudomallei 668] gi|126225847|gb|ABN89387.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|126243780|gb|ABO06873.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|134250864|gb|EBA50943.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|147749580|gb|EDK56654.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|147753760|gb|EDK60825.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|148027398|gb|EDK85419.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|157807741|gb|EDO84911.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|157936771|gb|EDO92441.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|160698494|gb|EDP88464.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|169654244|gb|EDS86937.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|184210057|gb|EDU07100.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|217395266|gb|EEC35284.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|237503358|gb|ACQ95676.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|238520270|gb|EEP83732.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|242140253|gb|EES26655.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|243061024|gb|EES43210.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|254219475|gb|EET08859.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] Length = 165 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL + +T+ +VV+ TE F + CFA SH+ C + +C L V A Sbjct: 61 NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHR-SCVIQSACRLRGVFAAARE 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L + S + + Sbjct: 120 AFFAELDKHTIGELAQPASQLATLLG 145 >gi|328552565|gb|AEB23057.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens TA208] gi|328910965|gb|AEB62561.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens LL3] Length = 144 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 88/144 (61%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A ++ + I +IA+ IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+ Sbjct: 61 RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 VL +Y++ LV+N+ I ++ + Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLKS 144 >gi|16767613|ref|NP_463228.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56416158|ref|YP_153233.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161617637|ref|YP_001591602.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139505|ref|YP_219230.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167553785|ref|ZP_02347531.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168231405|ref|ZP_02656463.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239662|ref|ZP_02664720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245155|ref|ZP_02670087.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263280|ref|ZP_02685253.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449946|ref|YP_002048410.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470152|ref|ZP_03076136.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735133|ref|YP_002117308.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247528|ref|YP_002149281.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197365083|ref|YP_002144720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387819|ref|ZP_03214431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927167|ref|ZP_03218369.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205355124|ref|YP_002228925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859512|ref|YP_002246163.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238910525|ref|ZP_04654362.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81361477|sp|Q5PL57|NSRR_SALPA RecName: Full=HTH-type transcriptional repressor nsrR gi|81520811|sp|Q8ZKA3|NSRR_SALTY RecName: Full=HTH-type transcriptional repressor nsrR gi|119372261|sp|Q57GL3|NSRR_SALCH RecName: Full=HTH-type transcriptional repressor nsrR gi|189030888|sp|A9N4Z2|NSRR_SALPB RecName: Full=HTH-type transcriptional repressor nsrR gi|226737674|sp|B5F393|NSRR_SALA4 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737675|sp|B5R0P4|NSRR_SALEP RecName: Full=HTH-type transcriptional repressor nsrR gi|226737676|sp|B5R9C4|NSRR_SALG2 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737677|sp|B4TFB2|NSRR_SALHS RecName: Full=HTH-type transcriptional repressor nsrR gi|226737678|sp|B5BKI6|NSRR_SALPK RecName: Full=HTH-type transcriptional repressor nsrR gi|226737679|sp|B4TSF8|NSRR_SALSV RecName: Full=HTH-type transcriptional repressor nsrR gi|16422928|gb|AAL23187.1| putative negative regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130415|gb|AAV79921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161367001|gb|ABX70769.1| hypothetical protein SPAB_05500 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408250|gb|ACF68469.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456516|gb|EDX45355.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710635|gb|ACF89856.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096560|emb|CAR62170.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211231|gb|ACH48628.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197287648|gb|EDY27039.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604917|gb|EDZ03462.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323832|gb|EDZ09027.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274905|emb|CAR39972.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321871|gb|EDZ09710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334382|gb|EDZ21146.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336063|gb|EDZ22827.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348036|gb|EDZ34667.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711315|emb|CAR35693.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249457|emb|CBG27322.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996699|gb|ACY91584.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160855|emb|CBW20386.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320088794|emb|CBY98552.1| HTH-type transcriptional repressor nsrR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322615529|gb|EFY12449.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618589|gb|EFY15478.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621998|gb|EFY18848.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627722|gb|EFY24513.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631029|gb|EFY27793.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637752|gb|EFY34453.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642416|gb|EFY39020.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644015|gb|EFY40563.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650483|gb|EFY46891.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653553|gb|EFY49881.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659738|gb|EFY55981.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662051|gb|EFY58267.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666200|gb|EFY62378.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672620|gb|EFY68731.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676050|gb|EFY72121.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680534|gb|EFY76572.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684572|gb|EFY80576.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192887|gb|EFZ78113.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197237|gb|EFZ82377.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201646|gb|EFZ86710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206160|gb|EFZ91122.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213168|gb|EFZ97970.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215542|gb|EGA00286.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323227830|gb|EGA11984.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229000|gb|EGA13129.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236388|gb|EGA20464.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238707|gb|EGA22759.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241842|gb|EGA25871.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248009|gb|EGA31946.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254660|gb|EGA38471.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258281|gb|EGA41958.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263573|gb|EGA47094.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265831|gb|EGA49327.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270275|gb|EGA53723.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326630282|gb|EGE36625.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991178|gb|AEF10161.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 141 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPANTICIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138 >gi|308172925|ref|YP_003919630.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM 7] gi|307605789|emb|CBI42160.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM 7] Length = 144 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 88/144 (61%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A ++ + I +IA+ IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+ Sbjct: 61 RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 VL +Y++ LV+N+ I ++ + Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144 >gi|226953865|ref|ZP_03824329.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226835348|gb|EEH67731.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 150 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I+ IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + ++V+ + + EC C L CGL +L +AL +F+ Sbjct: 61 GGGLRLNPEAKSLKLGEIVRTLQGHQQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRN 133 L QY++ ++++ Sbjct: 118 SLNQYTLGEVIQH 130 >gi|145297732|ref|YP_001140573.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850504|gb|ABO88825.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida subsp. salmonicida A449] Length = 157 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 82/142 (57%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG Sbjct: 1 MRLTSYTDFGLRALLYLATLPQGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+R+ + + I V++A E + +C + C +V C L S L++A+NAF Sbjct: 61 KNGGIRMACTPETVNIGQVIRALEGNLDGIDCNSPV---CHIVSVCLLKSALKEAMNAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 V+ Y+++ L+ NR ++K+F Sbjct: 118 AVMDSYTLQDLLANRDELQKVF 139 >gi|296112360|ref|YP_003626298.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4] gi|295920054|gb|ADG60405.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4] gi|326568908|gb|EGE18977.1| transcriptional regulator NsrR [Moraxella catarrhalis BC1] Length = 177 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL I + ++V+ TE FFV CFA L+ +T+ LRK Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 V Q ++ C++ +K++F Sbjct: 121 LSV-GQPAMSCVISPACHLKQVF 142 >gi|294054903|ref|YP_003548561.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] gi|293614236|gb|ADE54391.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] Length = 145 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y + + I ++AE +S + KI++ L G +ET+RG+ Sbjct: 1 MELTSFTDYSLRVLIYLTHDRERLSSIDELAEFYGLSRHHVAKIVKRLADLGYLETLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL + I I +V+K TE F + EC + C + G C L L A + FF Sbjct: 61 NGGLRLGAEPESINIAEVIKGTEPHFNLVECMGGASDTACMIDGHCKLKGALAVARSHFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L +YS+ + S + + Sbjct: 121 KHLAEYSLADVALTEDSSRAV 141 >gi|215512187|gb|ACJ68081.1| NsrR [Moraxella catarrhalis O35E] gi|215512191|gb|ACJ68084.1| NsrR [Moraxella catarrhalis 7169] gi|215512196|gb|ACJ68088.1| NsrR [Moraxella catarrhalis] gi|326561869|gb|EGE12204.1| transcriptional regulator NsrR [Moraxella catarrhalis 7169] gi|326563304|gb|EGE13571.1| transcriptional regulator NsrR [Moraxella catarrhalis 46P47B1] gi|326563419|gb|EGE13684.1| transcriptional regulator NsrR [Moraxella catarrhalis 12P80B1] gi|326565958|gb|EGE16119.1| transcriptional regulator NsrR [Moraxella catarrhalis 103P14B1] gi|326569208|gb|EGE19269.1| transcriptional regulator NsrR [Moraxella catarrhalis BC7] gi|326571881|gb|EGE21886.1| transcriptional regulator NsrR [Moraxella catarrhalis BC8] gi|326575393|gb|EGE25318.1| transcriptional regulator NsrR [Moraxella catarrhalis 101P30B1] gi|326577989|gb|EGE27853.1| transcriptional regulator NsrR [Moraxella catarrhalis O35E] Length = 177 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL I + ++V+ TE FFV CFA L+ +T+ LRK Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 V Q ++ C++ +K++F Sbjct: 121 LSV-GQPAMSCVISPACHLKQVF 142 >gi|170741067|ref|YP_001769722.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp. 4-46] gi|168195341|gb|ACA17288.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp. 4-46] Length = 157 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT+ TDY +R L+Y + + I++IA A ISE L K++ L + G++ T RGR Sbjct: 1 MHLTRYTDYALRTLIYLGLREPQQSSIAEIARAYGISENHLTKVVHQLGRLGLIRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + VV+ TEE + ECFAS C + SC L L +AL AF Sbjct: 61 GGGLRLGKPPSEIVVGAVVRQTEEDLALVECFASSA--CAITASCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLVRNRS 135 VL Y++ L+ + S Sbjct: 119 VLDGYTLADLLEDGS 133 >gi|16763186|ref|NP_458803.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144665|ref|NP_808007.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052276|ref|ZP_03345154.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418156|ref|ZP_03351222.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428666|ref|ZP_03361416.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582913|ref|ZP_03364739.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648975|ref|ZP_03379028.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852964|ref|ZP_03382496.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811153|ref|ZP_06541782.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829975|ref|ZP_06547426.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81512227|sp|Q8Z183|NSRR_SALTI RecName: Full=HTH-type transcriptional repressor nsrR gi|25303603|pir||AG1049 conserved hypothetical protein yjeB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505494|emb|CAD06844.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29140304|gb|AAO71867.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 141 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPANTICIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138 >gi|84683690|ref|ZP_01011593.1| Transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|84668433|gb|EAQ14900.1| Transcriptional regulator [Rhodobacterales bacterium HTCC2654] Length = 147 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 73/128 (57%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M+C ++ D R S+IAEA S L +++ L + G VET RGR GG+ L R + I+ Sbjct: 1 MFCGVNTDQTVRSSEIAEATNASGNHLSQVIHKLQQFGYVETRRGRGGGLMLARKPEAIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I + + E ECF + +CPL+ +C L + ++KAL+AF+ L + ++ LV++ Sbjct: 61 IGALFRDFEAEVPFTECFDAANNNCPLIETCRLNTYIKKALDAFYSELDEVTLADLVKDN 120 Query: 135 SSIKKIFN 142 + ++ + Sbjct: 121 CGLIELLD 128 >gi|167562509|ref|ZP_02355425.1| Rrf2 family protein [Burkholderia oklahomensis EO147] gi|167569690|ref|ZP_02362564.1| Rrf2 family protein [Burkholderia oklahomensis C6786] Length = 165 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL + +T+ +VV+ TE F + CFA SH+ C + +C L V A + Sbjct: 61 NGGLRLNAQSAALTVGEVVRKTENDFALVGCFADESESHR-SCVIQSACRLKGVFAAARD 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L + S + + Sbjct: 120 AFFAELDKHTIGELSQPASQLAALLG 145 >gi|146310026|ref|YP_001175100.1| transcriptional repressor NsrR [Enterobacter sp. 638] gi|189030886|sp|A4W5R9|NSRR_ENT38 RecName: Full=HTH-type transcriptional repressor nsrR gi|145316902|gb|ABP59049.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638] Length = 141 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + ISQ+ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I + DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPAQSIRVGDVVRELEPLSLV-NCSSDF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|91795047|ref|YP_564698.1| hypothetical protein Sden_3702 [Shewanella denitrificans OS217] gi|91717049|gb|ABE56975.1| transcriptional regulator, BadM/Rrf2 family [Shewanella denitrificans OS217] Length = 151 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYGIR+LMY AI + RI +I + +S + KI+ L K G ++T+R Sbjct: 1 MQLTRYTDYGIRILMYLAIQPERTELFRIGEITDVFDLSANHVAKIVNHLGKLGYLKTIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L A I + +V+ E S C + C C L S+L KAL+A+ Sbjct: 61 GKHGGFKLVTSASDINLGTLVRQLENSLVQVNCAEPY---CRFTPVCNLKSMLAKALSAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 VL Y + ++ N + Sbjct: 118 LAVLDSYYLSDVIDNSDKL 136 >gi|193078481|gb|ABO13483.2| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978] Length = 158 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L + +S+ Sbjct: 118 SLDQYTLGEVLQQPKSA 134 >gi|117620851|ref|YP_855204.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562258|gb|ABK39206.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 155 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 82/142 (57%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG Sbjct: 1 MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+R+ + + I V++A E + +C + C +V C L + L++A+NAF Sbjct: 61 KNGGIRMACAPETVNIGQVIRALEGNLDGIDCGSPA---CHIVSVCLLKNALKEAMNAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 V+ Y+++ L+ NR ++K+F Sbjct: 118 AVMDSYTLQDLLANRDELQKVF 139 >gi|260557021|ref|ZP_05829238.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409627|gb|EEX02928.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 148 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRILMYVARPSDTPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L + +S+ Sbjct: 121 SLDQYTLGEVLQQPKSA 137 >gi|300721495|ref|YP_003710770.1| hypothetical protein XNC1_0462 [Xenorhabdus nematophila ATCC 19061] gi|297627987|emb|CBJ88536.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 139 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSHLGLVNAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA +I I DVV++ E V C A C + +C L SVL +A+ F Sbjct: 61 KNGGISLGKPAREIRIGDVVRSLEPLALV-NCSA-----CQITSACRLKSVLNQAVENFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L ++++ +V++ S + ++ Sbjct: 115 EELDKHTLADMVKDNSPLYQLL 136 >gi|213158841|ref|YP_002320839.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|215482177|ref|YP_002324359.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|301345004|ref|ZP_07225745.1| hypothetical protein AbauAB0_02147 [Acinetobacter baumannii AB056] gi|301512065|ref|ZP_07237302.1| hypothetical protein AbauAB05_10807 [Acinetobacter baumannii AB058] gi|301596098|ref|ZP_07241106.1| hypothetical protein AbauAB059_09799 [Acinetobacter baumannii AB059] gi|332853133|ref|ZP_08434570.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332868621|ref|ZP_08438277.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] gi|213058001|gb|ACJ42903.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|213988893|gb|ACJ59192.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|332728802|gb|EGJ60161.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332733298|gb|EGJ64492.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] Length = 145 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L + +S+ Sbjct: 118 SLDQYTLGEVLQQPKSA 134 >gi|184159604|ref|YP_001847943.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|239503240|ref|ZP_04662550.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|332876089|ref|ZP_08443873.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6014059] gi|183211198|gb|ACC58596.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509514|gb|ADX04968.1| transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323519534|gb|ADX93915.1| hypothetical protein ABTW07_3498 [Acinetobacter baumannii TCDC-AB0715] gi|332735707|gb|EGJ66750.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6014059] Length = 145 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L + +S+ Sbjct: 118 SLDQYTLGEVLQQPKSA 134 >gi|206889263|ref|YP_002249119.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741201|gb|ACI20258.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 164 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +T+ TDY IR ++Y + DY R +I++ I + FL KIL+ L K G+V+ RG Sbjct: 30 LQITRETDYAIRTVLYLSGKKDYSARAEEISQQMQIPKSFLRKILKQLEKVGLVQLKRGV 89 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L R +IT+ DV+ A E++ + C + KI C L+ C + V K Sbjct: 90 SGGIKLLREPVEITLFDVIVAMEKAVALNRCVINDKI-CGLISHCPVHPVWFKVRERLIQ 148 Query: 121 VLTQYSIECLVRNRSS 136 L + + L + +S Sbjct: 149 ALQEIKFQELAKGAAS 164 >gi|169794588|ref|YP_001712381.1| hypothetical protein ABAYE0402 [Acinetobacter baumannii AYE] gi|169147515|emb|CAM85376.1| conserved hypothetical protein [Acinetobacter baumannii AYE] Length = 148 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L + +S+ Sbjct: 121 SLDQYTLGEVLQQPKSA 137 >gi|330831194|ref|YP_004394146.1| Rrf2 family protein [Aeromonas veronii B565] gi|328806330|gb|AEB51529.1| Rrf2 family protein [Aeromonas veronii B565] Length = 156 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG Sbjct: 1 MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYGVSRNHMVKVVNQLVKLGYLQSQRG 60 Query: 60 RRGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG+R+ C PA I I V++A E + +C + C +V C L S L++A++AF Sbjct: 61 KNGGIRMACDPA-TINIGQVIRALEGNLDGIDCGSPA---CHIVSVCLLKSALKEAMDAF 116 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 V+ Y+++ L+ NR ++++F Sbjct: 117 LAVMDSYTLQDLLANRDELQRVF 139 >gi|326576519|gb|EGE26427.1| transcriptional regulator NsrR [Moraxella catarrhalis CO72] Length = 177 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 31/169 (18%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---------------------- 96 G+ GG+RL I + ++V+ TE FFV CFA Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDDVMADNLIKIKTLD 120 Query: 97 -------IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 + C + +C L V +A AF VL Y++ ++ N ++ Sbjct: 121 LSVGQPALSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELR 169 >gi|301167694|emb|CBW27277.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 143 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IRVLMY I+++ ++I+ A IS L KI+ L K +++ +G Sbjct: 1 MKLTTYTDYSIRVLMYLGINSERLCTSTEISAAYGISRNHLSKIIHQLSKLKYIQSYKGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119 GG+ L I + +++ E F + ECF + C + SC L S+L +L F Sbjct: 61 SGGITLLEKPKNINLRKLIEQVEPDFDIVECFNQDSVFPCKITPSCKLKSILNSSLIEFL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 L +Y++ ++ N+ +K Sbjct: 121 KNLEKYTLADIIENKDELK 139 >gi|237729111|ref|ZP_04559592.1| transcriptional repressor NsrR [Citrobacter sp. 30_2] gi|226908840|gb|EEH94758.1| transcriptional repressor NsrR [Citrobacter sp. 30_2] Length = 141 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPAKDIGIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEKNQPLYKLL 138 >gi|126738163|ref|ZP_01753884.1| Rrf2 family protein [Roseobacter sp. SK209-2-6] gi|126720660|gb|EBA17365.1| Rrf2 family protein [Roseobacter sp. SK209-2-6] Length = 151 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 73/143 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K +DY +R+L++ A H D +IA+ + L KI Q L G VE++RGR Sbjct: 1 MQISKFSDYALRILIHLATHEDGLMSTREIAQMQKLPFNHLAKISQWLTHEGYVESLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P + I+I +++ +E + EC C + +CGL +L +A FF Sbjct: 61 NGGMRLALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILNEAQEMFFT 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L ++ ++ ++ + A Sbjct: 121 TLDSKTLHDVLSGNGGMRNLLRA 143 >gi|163742862|ref|ZP_02150246.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10] gi|161383826|gb|EDQ08211.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10] Length = 151 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 74/143 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K +DY +R+L++ + H + +IAE + L KI Q L G VE+VRGR Sbjct: 1 MQISKFSDYALRILIHLSTHEEGLMSTREIAEMQKLPFNHLAKISQWLTHEGYVESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ P + I+I +++ +E + EC C + +CGL +L +A FF Sbjct: 61 NGGMRMALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILTEAQEVFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L +++ ++ +K + A Sbjct: 121 ALDSKTLQNVLEGNRGMKNLIRA 143 >gi|154243891|ref|YP_001409464.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154163013|gb|ABS70228.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 145 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 1/130 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R LM+ A + +IA+A IS L K+++ L AG+V T RG Sbjct: 1 MRLTSFTDFGLRALMWLAGDPERVFTTDEIAQAFGISRNHLTKVIRELAAAGVVTTQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R AD IT+ ++V+ E + ECF + C L C L L+ A AF Sbjct: 61 GGGFRLARSADDITLGEIVRLLEARSALVECFRADGGACALTPGCRLKGKLKAAREAFLC 120 Query: 121 VLTQYSI-EC 129 L + ++ EC Sbjct: 121 ELDRTTLAEC 130 >gi|296115761|ref|ZP_06834387.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977738|gb|EFG84490.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 151 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 6/136 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R L Y +H D I ++A A ISE L K++ L + G ++T+RGR GG+ L R A Sbjct: 1 MRTLFYVGLHTDRRVSIREVANAYGISENHLVKVIHKLGRGGFIQTMRGRGGGLTLARAA 60 Query: 71 DQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 D+I I DVV+ TEE + C + +D C L C L +L +A++AF VL ++ Sbjct: 61 DEIRIGDVVRYTEEDMNLVACEPT-TVDGRSCVLARHCRLRGLLGQAIDAFMMVLDGATL 119 Query: 128 ECLVRNRSSI--KKIF 141 L+ + + ++IF Sbjct: 120 GSLLTDEDCVVLRQIF 135 >gi|296446526|ref|ZP_06888469.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296256022|gb|EFH03106.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 144 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R L+ A D + IA+ +S + K+LQ L +G VE +RG Sbjct: 1 MKLTTFTDFGLRALILLASRKDEVLSAAAIADYFSVSRHHMAKVLQELAASGYVEGIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GGVRL + I + DVV++ ++ + +CF DC L+ C L +L A F Sbjct: 61 QGGVRLAKDPRDIRVGDVVRSLDKEQALVDCFRDGWNDCALLPRCRLKGMLANAQQGFLR 120 Query: 121 VLTQYSI-ECLVRNR-SSIKKI 140 L +++I +CL + +SI K+ Sbjct: 121 ELDRFTISDCLEKTEAASIPKL 142 >gi|307823007|ref|ZP_07653237.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] gi|307735782|gb|EFO06629.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] Length = 151 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 1/128 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +R+L+Y A + I +IAE IS L K+ L G + T RG Sbjct: 1 MQLTQFTDLSLRLLIYLARLPEPGMATIQEIAEYHQISRNHLVKVANSLANQGFIMTTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG++L RPA I + +VV+ TE + + ECF + C L+ +C L + L +A AF Sbjct: 61 KGGGIQLARPAYTIGVGEVVRRTELNMNLVECFDAPTNQCRLIRNCFLKATLYEAQRAFM 120 Query: 120 DVLTQYSI 127 VL +Y++ Sbjct: 121 TVLDKYTL 128 >gi|212709958|ref|ZP_03318086.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM 30120] gi|212687367|gb|EEB46895.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM 30120] Length = 142 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A+ I+Q+ E +S + KI+ L G V+ RG Sbjct: 3 VQLTSFTDYGLRALIYLAALEKGQMTSITQVTEVYGVSRNHMVKIINQLSHLGYVKATRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA+ I I DVV+A E V C C + +C L L+KA+ F Sbjct: 63 KNGGIALGQPAESIRIGDVVRALEPLTLV-NCSGEF---CHITPACRLKGALQKAIQQFL 118 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V++ S + ++ Sbjct: 119 QELDQYTLADMVKDNSPLYQLL 140 >gi|209696175|ref|YP_002264105.1| transcriptional repressor NsrR [Aliivibrio salmonicida LFI1238] gi|226736212|sp|B6EMP9|NSRR_ALISL RecName: Full=HTH-type transcriptional repressor nsrR gi|208010128|emb|CAQ80453.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 141 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + I+ + E +S + KI+ L + G ++TVRG Sbjct: 1 MQLTNFTDFGLRALIYLASLPKGELTSITVVTETFDVSRNHMVKIINKLGQEGFIKTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L RPADQI I +V+++ E F + C C + +C L + L KA AF Sbjct: 61 KNGGICLGRPADQIIIGEVIRSI-EPFNIVNCAPEF---CHITPACRLKTALAKAKQAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 D L Q++I+ ++ + + Sbjct: 117 DELDQHTIQDMLTENNEL 134 >gi|90414467|ref|ZP_01222443.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK] gi|161936286|ref|YP_131442.2| transcriptional repressor NsrR [Photobacterium profundum SS9] gi|119372260|sp|Q6LM38|NSRR_PHOPR RecName: Full=HTH-type transcriptional repressor nsrR gi|90324472|gb|EAS41031.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK] Length = 144 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V+TVRG Sbjct: 1 MQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNA 117 + GG+RL PA++I + DVV+ATE V +E F C + +C L +L A +A Sbjct: 61 KNGGIRLGMPANRIILGDVVRATEPLQIVNCSEDF------CHITPACQLKGILASARSA 114 Query: 118 FFDVLTQYSIECLVRNRSSI 137 F L ++++ L+ N + Sbjct: 115 FLAELDKHTLLSLIDNNPPL 134 >gi|90407535|ref|ZP_01215717.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3] gi|90311345|gb|EAS39448.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3] Length = 149 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 11/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M LT TDYG+R L+Y AI P IS +A +S + K++ L K G ++ Sbjct: 1 MQLTTFTDYGLRTLIYLAI---LPKGELADISSVANIYNVSRNHMVKVISKLSKLGYIDA 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 VRG+ GG+RL A +I + DV++ ES + C A C +VG+C L VL A N Sbjct: 58 VRGKNGGIRLGIDAHKIFLGDVIQ-NMESMNIVNCNAGF---CHIVGACQLKGVLASATN 113 Query: 117 AFFDVLTQYSIECLVRNR 134 AF L +++I LV + Sbjct: 114 AFLAELNKHTILSLVEDN 131 >gi|270265005|ref|ZP_06193268.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270040939|gb|EFA14040.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 141 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I + DVV+A E V C + C + +C L VL + + F Sbjct: 61 KNGGIRLGKPAETIRLGDVVRALEPLSLV-NCNSDF---CHITPACRLKQVLHQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +++ +V + + K+ Sbjct: 117 EELDSHTLADMVEDNPPLYKLL 138 >gi|300021837|ref|YP_003754448.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] gi|299523658|gb|ADJ22127.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 165 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T + IR+L+ C + ND +++ +++ +++ +FKI+ L AG + VRG Sbjct: 1 MRLTKQTGHAIRILIDCTLANDELVKVADVSDRLGVTKQNVFKIVHILSHAGFLSAVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA I I DVV+A E + E K +D + ++ AL+AF Sbjct: 61 NGGVRLAKPATSIKIGDVVRAIEVTRVQVEGGRGRKTVDND---PASINAMFDDALSAFI 117 Query: 120 DVLTQYSIECLVRNRSSI 137 VL Q+++ L +S + Sbjct: 118 SVLDQHTLAELASQKSPL 135 >gi|330445010|ref|ZP_08308664.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493128|dbj|GAA03161.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 143 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 5/144 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G VETVRG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELASITKVTETYNVSRNHMVKIINKLGQLGYVETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL PA I + DVV+A E + C A C + +C L +L A AF Sbjct: 61 KNGGIRLGMPASTIIVGDVVRAI-EPLQIVNCSADF---CHITPACRLKGILANAREAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L +++ LV + + + + N+ Sbjct: 117 AELDNHTLLSLVEDNAPLLDLLNS 140 >gi|149202404|ref|ZP_01879377.1| Rrf2 family protein [Roseovarius sp. TM1035] gi|149144502|gb|EDM32533.1| Rrf2 family protein [Roseovarius sp. TM1035] Length = 148 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 69/127 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R+LM A D +++A +S L KI+Q L +AG+++T RG Sbjct: 1 MRLTSFTDFGLRMLMRMASAPDRAFSSAELAAEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +I + DV++ E + CF + +C L G C L + L+ A AF D Sbjct: 61 GGGAILARPPSEIRLGDVIRHLESGQALVVCFGADAGECSLDGRCRLKARLKAAERAFLD 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 DLDRSTL 127 >gi|56965514|ref|YP_177247.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911759|dbj|BAD66286.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 153 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDY +R L+Y ++ + ++ IA IS L K++ L + G++ T+RG Sbjct: 3 IQLTTYTDYALRALLYVGSLPDGERTQVKDIASVYNISLNHLQKVIHDLGRKGVLHTIRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L I I +V+ E+ V ECF + +C + SC L L KA +AFF Sbjct: 63 KHGGIALAHKPVDINIGKLVRELEDVQLV-ECFRDNN-NCLISNSCKLKEALAKAQHAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QYS+ + N++ + +F Sbjct: 121 QVLDQYSLADFLENKADLYALF 142 >gi|308446118|ref|XP_003087101.1| hypothetical protein CRE_03606 [Caenorhabditis remanei] gi|308262503|gb|EFP06456.1| hypothetical protein CRE_03606 [Caenorhabditis remanei] Length = 271 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A D P I++IAE +SE L KI+ + K G + T RG+ Sbjct: 1 MQLNKFTDYALRILMYIAPPKDVPYTIAEIAEDLHVSENHLVKIVHFMGKQGWLITTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + +V+ + + EC + C L CGL +L +A+ F+ Sbjct: 61 GGGLRLNPDILEFRLGHIVRILQRDAQIVEC---NTPPCVLRPRCGLKGILDQAVEQFYQ 117 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L Y++ ++ KI N+ Sbjct: 118 SLDHYTVADVLNAPPQHPKIVNS 140 >gi|330991657|ref|ZP_08315608.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329761676|gb|EGG78169.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 153 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 TDY +R L+Y +H D I +IA+A ISE L K++ L + G+++ RGR GG+ L Sbjct: 3 TDYALRTLLYMGLHADRRVSIHEIADAYDISENHLVKVIHRLSRLGLIDARRGRGGGLVL 62 Query: 67 CRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 + I I DVV+ TE+ + C ++ C L C L L +AL+AF VL + Sbjct: 63 AHAPEDIRIGDVVRKTEDDMRLVSCEPANPEGAGCILSDMCKLRGALAQALDAFMKVLDE 122 Query: 125 YSIECLVRNRS 135 ++ L+ + Sbjct: 123 TTLADLLPDHD 133 >gi|320173668|gb|EFW48858.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella dysenteriae CDC 74-1112] Length = 141 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V+ C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELEPLSLVS-CSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|299768660|ref|YP_003730686.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1] gi|298698748|gb|ADI89313.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1] Length = 145 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPDALNCNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L +++S+ Sbjct: 118 SLDQYTLGEVLQQSKSA 134 >gi|197287183|ref|YP_002153055.1| transcriptional repressor NsrR [Proteus mirabilis HI4320] gi|226737673|sp|B4F272|NSRR_PROMH RecName: Full=HTH-type transcriptional repressor nsrR gi|194684670|emb|CAR46611.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 142 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ + +S + KI+ L G VE +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I + +VV+A E V C A C + +C L VL +A+ F Sbjct: 61 KNGGIRLGKPAADIIVGEVVRALEPLSLV-NCSAEF---CHITPACRLKLVLNQAIEQFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L ++++ LV N S + K+ Sbjct: 117 KELDRHTLAELVENNSPLYKLL 138 >gi|56461491|ref|YP_156772.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180501|gb|AAV83223.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina loihiensis L2TR] Length = 150 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K TDYG+RVLMY A D I +++ + L K++ L K G++ET RG Sbjct: 1 MQLKKYTDYGLRVLMYLAAKEDTKRATIDELSGIFNVPRNHLNKVVHQLGKEGLIETRRG 60 Query: 60 RRGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L PAD I + V++ E + +C HK +C + C L V+ + F Sbjct: 61 KNGGFLLAIEPAD-IRLDKVIRRLEGDEYWVDC---HKPECAIFPVCELKHVINQGKETF 116 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +D L Y++ LV N + I++ + Sbjct: 117 YDFLAGYTLASLVSNDAQIREFW 139 >gi|85704358|ref|ZP_01035461.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217] gi|85671678|gb|EAQ26536.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217] Length = 156 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57 M LTK TDY +RVL+Y A P +++ I E IS L K++ L+ G +E V Sbjct: 1 MRLTKFTDYSLRVLLYAATLK--PKQLTTIEETSNLYGISRAHLKKVVLGLIHEGFLEGV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG RL PA +I + +++ TE F +AECF C + C L VL AL+ Sbjct: 59 RGRSGGFRLAMPAHEINLGQLLRKTEPDFALAECFLPENA-CRVTKGCRLPIVLNLALSN 117 Query: 118 FFDVLTQYSI 127 F +++ Sbjct: 118 FLKTFDDFTL 127 >gi|224824735|ref|ZP_03697842.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224603228|gb|EEG09404.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 153 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RVLMY D P I +IAE +S L K++ + + G + T RG Sbjct: 1 MQLTRFTDLGLRVLMYLTHRERDTPVTIPEIAERFAVSRNHLVKVVHFMAQQGWLVTTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L RPAD + DV++ E + +C + C L C L S L L AFF Sbjct: 61 KGGGLALARPADHYRLGDVIRTLEGMSDLIDCA---EPPCALRSGCQLKSALDVGLTAFF 117 Query: 120 DVLTQYSIECLV 131 + L ++++ V Sbjct: 118 EALNRFTLASAV 129 >gi|237806924|ref|YP_002891364.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] gi|237499185|gb|ACQ91778.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] Length = 151 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L++ A+ D + I+++A+ IS + KI+ L G ++T+RG Sbjct: 1 MQLTLFTDYALRTLVFLALQPDQQLSTITEVADRFSISRNHVVKIVHQLGMKGYIDTIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + +++ E + +C + C L C +++RKA+ AF Sbjct: 61 KHGGIRLARSARDINLGNLIADMENVSCLLDC---QREGCRLAPGCRFQAIMRKAMRAFM 117 Query: 120 DVLTQYSIECLVRNRSSI 137 VL+++++ LVR+ + Sbjct: 118 GVLSEFTLADLVRDEEQM 135 >gi|187731546|ref|YP_001882869.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94] gi|226737680|sp|B2TY53|NSRR_SHIB3 RecName: Full=HTH-type transcriptional repressor nsrR gi|187428538|gb|ACD07812.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94] Length = 141 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTNFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|168751471|ref|ZP_02776493.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4113] gi|168754748|ref|ZP_02779755.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4401] gi|168766456|ref|ZP_02791463.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4486] gi|168774110|ref|ZP_02799117.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4196] gi|168780609|ref|ZP_02805616.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4076] gi|195935968|ref|ZP_03081350.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4024] gi|208808424|ref|ZP_03250761.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4206] gi|208812580|ref|ZP_03253909.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4045] gi|208819958|ref|ZP_03260278.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4042] gi|209397401|ref|YP_002273720.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4115] gi|254796197|ref|YP_003081034.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. TW14359] gi|226736214|sp|B5Z2I4|NSRR_ECO5E RecName: Full=HTH-type transcriptional repressor nsrR gi|187770187|gb|EDU34031.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4196] gi|188014508|gb|EDU52630.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4113] gi|189001762|gb|EDU70748.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4076] gi|189357816|gb|EDU76235.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4401] gi|189363933|gb|EDU82352.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4486] gi|208728225|gb|EDZ77826.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4206] gi|208733857|gb|EDZ82544.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4045] gi|208740081|gb|EDZ87763.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4042] gi|209158801|gb|ACI36234.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4115] gi|209750226|gb|ACI73420.1| hypothetical protein ECs5154 [Escherichia coli] gi|254595597|gb|ACT74958.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] Length = 141 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGLMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|167619786|ref|ZP_02388417.1| Rrf2 family protein [Burkholderia thailandensis Bt4] gi|257138937|ref|ZP_05587199.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 165 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL + +T+ VV+ TE F + CF +H+ +C + +C L V A Sbjct: 61 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHR-NCVIQSACRLKGVFAAARE 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L + S + + Sbjct: 120 AFFAELDKHTIGELAQPASQLSMLLG 145 >gi|293610818|ref|ZP_06693118.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827162|gb|EFF85527.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 145 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSI-ECLVRNRSS 136 L QY++ E L +++S+ Sbjct: 118 SLDQYTLGEVLQQSKSA 134 >gi|325919608|ref|ZP_08181620.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri ATCC 19865] gi|325549944|gb|EGD20786.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri ATCC 19865] Length = 152 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARGDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A +IT++++V+A E + EC H C + +CG+ S R + D Sbjct: 62 HGGYRLARAASEITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSIECLVR 132 L + ++ +++ Sbjct: 121 ALRRVTLAQMLQ 132 >gi|167581669|ref|ZP_02374543.1| Rrf2 family protein [Burkholderia thailandensis TXDOH] Length = 165 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL + +T+ VV+ TE F + CF +H+ +C + +C L V A Sbjct: 61 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHR-NCVIQSACRLKGVFAAARE 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L + S + + Sbjct: 120 AFFAELDKHTIGELAQPASQLSMLLG 145 >gi|15804767|ref|NP_290808.1| transcriptional repressor NsrR [Escherichia coli O157:H7 EDL933] gi|15834408|ref|NP_313181.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. Sakai] gi|16132000|ref|NP_418599.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli str. K-12 substr. MG1655] gi|24115533|ref|NP_710043.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 301] gi|26251070|ref|NP_757110.1| transcriptional repressor NsrR [Escherichia coli CFT073] gi|30065550|ref|NP_839721.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 2457T] gi|74314663|ref|YP_313082.1| transcriptional repressor NsrR [Shigella sonnei Ss046] gi|82546581|ref|YP_410528.1| transcriptional repressor NsrR [Shigella boydii Sb227] gi|82779440|ref|YP_405789.1| transcriptional repressor NsrR [Shigella dysenteriae Sd197] gi|89110898|ref|AP_004678.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|91213727|ref|YP_543713.1| transcriptional repressor NsrR [Escherichia coli UTI89] gi|110644535|ref|YP_672265.1| transcriptional repressor NsrR [Escherichia coli 536] gi|110808096|ref|YP_691616.1| transcriptional repressor NsrR [Shigella flexneri 5 str. 8401] gi|117626524|ref|YP_859847.1| transcriptional repressor NsrR [Escherichia coli APEC O1] gi|168760419|ref|ZP_02785426.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4501] gi|168784814|ref|ZP_02809821.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC869] gi|168801832|ref|ZP_02826839.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC508] gi|170083624|ref|YP_001732944.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170680746|ref|YP_001746573.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5] gi|191165643|ref|ZP_03027483.1| transcriptional repressor NsrR [Escherichia coli B7A] gi|191170792|ref|ZP_03032344.1| transcriptional repressor NsrR [Escherichia coli F11] gi|191174524|ref|ZP_03036022.1| transcriptional repressor NsrR [Escherichia coli F11] gi|193066007|ref|ZP_03047065.1| transcriptional repressor NsrR [Escherichia coli E22] gi|193070883|ref|ZP_03051815.1| transcriptional repressor NsrR [Escherichia coli E110019] gi|194426693|ref|ZP_03059247.1| transcriptional repressor NsrR [Escherichia coli B171] gi|194434604|ref|ZP_03066861.1| transcriptional repressor NsrR [Shigella dysenteriae 1012] gi|215489522|ref|YP_002331953.1| transcriptional repressor NsrR [Escherichia coli O127:H6 str. E2348/69] gi|217325196|ref|ZP_03441280.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. TW14588] gi|218561337|ref|YP_002394250.1| transcriptional repressor NsrR [Escherichia coli S88] gi|218692512|ref|YP_002400724.1| transcriptional repressor NsrR [Escherichia coli ED1a] gi|218697927|ref|YP_002405594.1| transcriptional repressor NsrR [Escherichia coli 55989] gi|218702875|ref|YP_002410504.1| transcriptional repressor NsrR [Escherichia coli IAI39] gi|218707789|ref|YP_002415308.1| transcriptional repressor NsrR [Escherichia coli UMN026] gi|227886779|ref|ZP_04004584.1| transcriptional repressor NsrR [Escherichia coli 83972] gi|238903285|ref|YP_002929081.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|256019823|ref|ZP_05433688.1| transcriptional repressor NsrR [Shigella sp. D9] gi|256025113|ref|ZP_05438978.1| transcriptional repressor NsrR [Escherichia sp. 4_1_40B] gi|260847008|ref|YP_003224786.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|260858331|ref|YP_003232222.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|260870914|ref|YP_003237316.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|261225298|ref|ZP_05939579.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. FRIK2000] gi|261255450|ref|ZP_05947983.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. FRIK966] gi|291285590|ref|YP_003502408.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. CB9615] gi|293402805|ref|ZP_06646902.1| transcriptional repressor NsrR [Escherichia coli FVEC1412] gi|293407905|ref|ZP_06651745.1| transcriptional repressor NsrR [Escherichia coli B354] gi|293417681|ref|ZP_06660303.1| transcriptional repressor NsrR [Escherichia coli B185] gi|293476489|ref|ZP_06664897.1| transcriptional repressor NsrR [Escherichia coli B088] gi|298378335|ref|ZP_06988219.1| transcriptional repressor NsrR [Escherichia coli FVEC1302] gi|301028000|ref|ZP_07191284.1| Rrf2 family protein [Escherichia coli MS 196-1] gi|306815607|ref|ZP_07449756.1| transcriptional repressor NsrR [Escherichia coli NC101] gi|307140872|ref|ZP_07500228.1| transcriptional repressor NsrR [Escherichia coli H736] gi|309787682|ref|ZP_07682293.1| rrf2 family protein [Shigella dysenteriae 1617] gi|312974014|ref|ZP_07788185.1| rrf2 family protein [Escherichia coli 1827-70] gi|331644925|ref|ZP_08346042.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736] gi|331650303|ref|ZP_08351375.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605] gi|331656006|ref|ZP_08356994.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718] gi|331660753|ref|ZP_08361685.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206] gi|331665842|ref|ZP_08366736.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143] gi|331671083|ref|ZP_08371916.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271] gi|331671327|ref|ZP_08372125.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280] gi|331680308|ref|ZP_08380967.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591] gi|331681197|ref|ZP_08381834.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299] gi|84028053|sp|P0AF65|NSRR_ECO57 RecName: Full=HTH-type transcriptional repressor nsrR gi|84028054|sp|P0AF64|NSRR_ECOL6 RecName: Full=HTH-type transcriptional repressor nsrR gi|84028055|sp|P0AF63|NSRR_ECOLI RecName: Full=HTH-type transcriptional repressor nsrR gi|84028056|sp|P0AF66|NSRR_SHIFL RecName: Full=HTH-type transcriptional repressor nsrR gi|119372258|sp|Q0T9L5|NSRR_ECOL5 RecName: Full=HTH-type transcriptional repressor nsrR gi|119372259|sp|Q1R382|NSRR_ECOUT RecName: Full=HTH-type transcriptional repressor nsrR gi|119372262|sp|Q31TA8|NSRR_SHIBS RecName: Full=HTH-type transcriptional repressor nsrR gi|119372263|sp|Q328F7|NSRR_SHIDS RecName: Full=HTH-type transcriptional repressor nsrR gi|119372264|sp|Q3YUG5|NSRR_SHISS RecName: Full=HTH-type transcriptional repressor nsrR gi|122956960|sp|Q0SXA4|NSRR_SHIF8 RecName: Full=HTH-type transcriptional repressor nsrR gi|189030884|sp|A1AJ83|NSRR_ECOK1 RecName: Full=HTH-type transcriptional repressor nsrR gi|226736213|sp|B7MLI3|NSRR_ECO45 RecName: Full=HTH-type transcriptional repressor nsrR gi|226736215|sp|B7NTN4|NSRR_ECO7I RecName: Full=HTH-type transcriptional repressor nsrR gi|226736775|sp|B1XDS9|NSRR_ECODH RecName: Full=HTH-type transcriptional repressor nsrR gi|226737668|sp|B7NGB2|NSRR_ECOLU RecName: Full=HTH-type transcriptional repressor nsrR gi|226737670|sp|B1LQJ8|NSRR_ECOSM RecName: Full=HTH-type transcriptional repressor nsrR gi|254768044|sp|B7UQI7|NSRR_ECO27 RecName: Full=HTH-type transcriptional repressor nsrR gi|254768045|sp|B7LC37|NSRR_ECO55 RecName: Full=HTH-type transcriptional repressor nsrR gi|254768046|sp|B7MSJ6|NSRR_ECO81 RecName: Full=HTH-type transcriptional repressor nsrR gi|259514607|sp|C4ZR55|NSRR_ECOBW RecName: Full=HTH-type transcriptional repressor nsrR gi|12519166|gb|AAG59374.1|AE005651_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26111502|gb|AAN83684.1|AE016771_195 Hypothetical protein yjeB [Escherichia coli CFT073] gi|537019|gb|AAA97074.1| yjeB [Escherichia coli str. K-12 substr. MG1655] gi|912442|dbj|BAA01776.1| ORF-1 [Shigella flexneri] gi|1790621|gb|AAC77135.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli str. K-12 substr. MG1655] gi|13364631|dbj|BAB38577.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24054861|gb|AAN45750.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043814|gb|AAP19533.1| hypothetical protein S4601 [Shigella flexneri 2a str. 2457T] gi|73858140|gb|AAZ90847.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81243588|gb|ABB64298.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81247992|gb|ABB68700.1| conserved hypothetical protein [Shigella boydii Sb227] gi|85676929|dbj|BAE78179.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|91075301|gb|ABE10182.1| hypothetical protein UTI89_C4778 [Escherichia coli UTI89] gi|110346127|gb|ABG72364.1| putative transcriptional regulator YjeB [Escherichia coli 536] gi|110617644|gb|ABF06311.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115515648|gb|ABJ03723.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|169891459|gb|ACB05166.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170518464|gb|ACB16642.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5] gi|189368884|gb|EDU87300.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4501] gi|189374986|gb|EDU93402.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC869] gi|189376056|gb|EDU94472.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC508] gi|190904338|gb|EDV64047.1| transcriptional repressor NsrR [Escherichia coli B7A] gi|190905204|gb|EDV64845.1| transcriptional repressor NsrR [Escherichia coli F11] gi|190909016|gb|EDV68603.1| transcriptional repressor NsrR [Escherichia coli F11] gi|192926330|gb|EDV80966.1| transcriptional repressor NsrR [Escherichia coli E22] gi|192955829|gb|EDV86300.1| transcriptional repressor NsrR [Escherichia coli E110019] gi|194415432|gb|EDX31700.1| transcriptional repressor NsrR [Escherichia coli B171] gi|194417189|gb|EDX33301.1| transcriptional repressor NsrR [Shigella dysenteriae 1012] gi|209750218|gb|ACI73416.1| hypothetical protein ECs5154 [Escherichia coli] gi|209750220|gb|ACI73417.1| hypothetical protein ECs5154 [Escherichia coli] gi|209750222|gb|ACI73418.1| hypothetical protein ECs5154 [Escherichia coli] gi|209750224|gb|ACI73419.1| hypothetical protein ECs5154 [Escherichia coli] gi|215267594|emb|CAS12049.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|217321417|gb|EEC29841.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. TW14588] gi|218354659|emb|CAV01655.1| DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218368106|emb|CAR05913.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|218372861|emb|CAR20741.1| DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218430076|emb|CAR10921.1| DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218434886|emb|CAR15824.1| DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|222035948|emb|CAP78693.1| HTH-type transcriptional repressor nsrR [Escherichia coli LF82] gi|227836352|gb|EEJ46818.1| transcriptional repressor NsrR [Escherichia coli 83972] gi|238862328|gb|ACR64326.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|257756980|dbj|BAI28482.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257762155|dbj|BAI33652.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257767270|dbj|BAI38765.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|260450995|gb|ACX41417.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1] gi|281181274|dbj|BAI57604.1| conserved hypothetical protein [Escherichia coli SE15] gi|281603640|gb|ADA76624.1| HTH-type transcriptional repressor nsrR [Shigella flexneri 2002017] gi|284924360|emb|CBG37476.1| transcriptional repressor [Escherichia coli 042] gi|290765463|gb|ADD59424.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. CB9615] gi|291320942|gb|EFE60384.1| transcriptional repressor NsrR [Escherichia coli B088] gi|291429720|gb|EFF02734.1| transcriptional repressor NsrR [Escherichia coli FVEC1412] gi|291430399|gb|EFF03397.1| transcriptional repressor NsrR [Escherichia coli B185] gi|291472156|gb|EFF14638.1| transcriptional repressor NsrR [Escherichia coli B354] gi|294490746|gb|ADE89502.1| transcriptional repressor NsrR [Escherichia coli IHE3034] gi|298280669|gb|EFI22170.1| transcriptional repressor NsrR [Escherichia coli FVEC1302] gi|299878910|gb|EFI87121.1| Rrf2 family protein [Escherichia coli MS 196-1] gi|305851269|gb|EFM51724.1| transcriptional repressor NsrR [Escherichia coli NC101] gi|307556345|gb|ADN49120.1| putative transcriptional regulator YjeB [Escherichia coli ABU 83972] gi|307629250|gb|ADN73554.1| transcriptional repressor NsrR [Escherichia coli UM146] gi|308924432|gb|EFP69928.1| rrf2 family protein [Shigella dysenteriae 1617] gi|310331548|gb|EFP98804.1| rrf2 family protein [Escherichia coli 1827-70] gi|312948827|gb|ADR29654.1| transcriptional repressor NsrR [Escherichia coli O83:H1 str. NRG 857C] gi|313646347|gb|EFS10809.1| rrf2 family protein [Shigella flexneri 2a str. 2457T] gi|315138732|dbj|BAJ45891.1| transcriptional repressor NsrR [Escherichia coli DH1] gi|315617591|gb|EFU98197.1| rrf2 family protein [Escherichia coli 3431] gi|320180691|gb|EFW55618.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella boydii ATCC 9905] gi|320187056|gb|EFW61767.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella flexneri CDC 796-83] gi|320190690|gb|EFW65340.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC1212] gi|320193558|gb|EFW68195.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli WV_060327] gi|320200692|gb|EFW75278.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli EC4100B] gi|320638936|gb|EFX08582.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. G5101] gi|320644305|gb|EFX13370.1| transcriptional repressor NsrR [Escherichia coli O157:H- str. 493-89] gi|320649623|gb|EFX18147.1| transcriptional repressor NsrR [Escherichia coli O157:H- str. H 2687] gi|320655019|gb|EFX22980.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660526|gb|EFX27987.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. USDA 5905] gi|320665795|gb|EFX32832.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. LSU-61] gi|323156005|gb|EFZ42167.1| rrf2 family protein [Escherichia coli EPECa14] gi|323161967|gb|EFZ47839.1| rrf2 family protein family protein [Escherichia coli E128010] gi|323166661|gb|EFZ52419.1| rrf2 family protein [Shigella sonnei 53G] gi|323176063|gb|EFZ61655.1| rrf2 family protein family protein [Escherichia coli 1180] gi|323189943|gb|EFZ75221.1| rrf2 family protein family protein [Escherichia coli RN587/1] gi|323935408|gb|EGB31752.1| transcriptional regulator [Escherichia coli E1520] gi|323940097|gb|EGB36291.1| transcriptional regulator [Escherichia coli E482] gi|323950753|gb|EGB46631.1| transcriptional regulator [Escherichia coli H252] gi|323955465|gb|EGB51229.1| transcriptional regulator [Escherichia coli H263] gi|323965564|gb|EGB61018.1| transcriptional regulator [Escherichia coli M863] gi|323975481|gb|EGB70582.1| transcriptional regulator [Escherichia coli TW10509] gi|326345490|gb|EGD69233.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli O157:H7 str. 1125] gi|326346653|gb|EGD70387.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli O157:H7 str. 1044] gi|327250118|gb|EGE61837.1| rrf2 family protein family protein [Escherichia coli STEC_7v] gi|330908520|gb|EGH37039.1| nitrite-sensitive transcriptional repressor NsrR [Escherichia coli AA86] gi|331035900|gb|EGI08138.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736] gi|331040697|gb|EGI12855.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605] gi|331046360|gb|EGI18450.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718] gi|331051795|gb|EGI23834.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206] gi|331056893|gb|EGI28887.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143] gi|331061672|gb|EGI33598.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271] gi|331071172|gb|EGI42529.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280] gi|331071771|gb|EGI43107.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591] gi|331081418|gb|EGI52579.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299] gi|332083175|gb|EGI88406.1| rrf2 family protein family protein [Shigella boydii 5216-82] gi|332083816|gb|EGI89034.1| rrf2 family protein family protein [Shigella dysenteriae 155-74] gi|332087072|gb|EGI92206.1| rrf2 family protein family protein [Shigella boydii 3594-74] gi|332346255|gb|AEE59589.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749054|gb|EGJ79477.1| rrf2 family protein family protein [Shigella flexneri K-671] gi|332749323|gb|EGJ79744.1| rrf2 family protein family protein [Shigella flexneri 4343-70] gi|332761860|gb|EGJ92134.1| rrf2 family protein family protein [Shigella flexneri 2747-71] gi|332763226|gb|EGJ93469.1| nsrR [Shigella flexneri 2930-71] gi|333009143|gb|EGK28599.1| rrf2 family protein family protein [Shigella flexneri K-218] gi|333011981|gb|EGK31366.1| rrf2 family protein family protein [Shigella flexneri K-304] Length = 141 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|83721287|ref|YP_442725.1| Rrf2 family protein [Burkholderia thailandensis E264] gi|83655112|gb|ABC39175.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 180 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 16 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 75 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL + +T+ VV+ TE F + CF +H+ +C + +C L V A Sbjct: 76 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHR-NCVIQSACRLKGVFAAARE 134 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L + S + + Sbjct: 135 AFFAELDKHTIGELAQPASQLSMLLG 160 >gi|194445441|ref|YP_002043622.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873714|ref|ZP_02698652.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265870|ref|ZP_03165944.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243076|ref|YP_002218251.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205358148|ref|ZP_02576074.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205360093|ref|ZP_02834507.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224586207|ref|YP_002640006.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62130446|gb|AAX68149.1| putative negative regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404104|gb|ACF64326.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632977|gb|EDX51431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244125|gb|EDY26745.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937592|gb|ACH74925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327229|gb|EDZ13993.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341100|gb|EDZ27864.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470735|gb|ACN48565.1| putative negative regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312915465|dbj|BAJ39439.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222667|gb|EFX47739.1| Nitrite-sensitive transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322717315|gb|EFZ08886.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132705|gb|ADX20135.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 162 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG Sbjct: 22 VQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 82 KNGGIRLGKPANTICIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 137 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 138 KELDNYTLADLVEENQPLYKLL 159 >gi|333010327|gb|EGK29760.1| rrf2 family protein family protein [Shigella flexneri VA-6] Length = 141 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|333011161|gb|EGK30575.1| rrf2 family protein family protein [Shigella flexneri K-272] gi|333012645|gb|EGK32025.1| rrf2 family protein family protein [Shigella flexneri K-227] Length = 141 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A+ + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMALLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|262377318|ref|ZP_06070542.1| transcriptional regulator [Acinetobacter lwoffii SH145] gi|262307771|gb|EEY88910.1| transcriptional regulator [Acinetobacter lwoffii SH145] Length = 146 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A D P I+++AE +S+ KI+ + K + T RG+ Sbjct: 1 MQLNKFTDYALRILMYVAQPRDLPYTIAELAERLQVSQNHAMKIVHFMAKQDWLITTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + + + +V+ + V EC + C L +CGL +L A+ F+ Sbjct: 61 GGGIRLNQASLNLQLGQIVRILQRDSNVVEC---NSPPCVLRPTCGLKGILDDAVEQFYS 117 Query: 121 VLTQYSIECLVRNRSS 136 L QY ++ ++ R++ Sbjct: 118 SLDQYVLKDVITPRNT 133 >gi|294679131|ref|YP_003579741.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477947|gb|ADE87334.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus SB 1003] Length = 166 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+L+Y A + I ++AE IS + K++ L + G + + +GR Sbjct: 1 MRLTTFTDYALRLLIYTAGKPESRVTIDEVAEWFAISRAHVKKVVLTLSRGGFLLSSKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +I + +V+ ATE F + EC+ + +C + C L +V +AL AF Sbjct: 61 NGGFTLARPPGEINLSEVILATEPDFGLFECYLTGN-ECRISRPCRLPNVANEALAAFLA 119 Query: 121 VLTQYSI 127 VL +Y++ Sbjct: 120 VLGKYTL 126 >gi|187478523|ref|YP_786547.1| hypothetical protein BAV2031 [Bordetella avium 197N] gi|115423109|emb|CAJ49640.1| conserved hypothetical protein [Bordetella avium 197N] Length = 145 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY D ++ +IAE IS L K++ + + G V R Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDREKAVTIPEIAERFAISRNHLVKVVHFMSQQGWVAATR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+ L RPA + D+++ E + +C + C L G C L VL +L F Sbjct: 61 GKGGGLALARPAASYRLGDLLRVLEHQGSLVDCA---EPPCALQGVCRLAGVLNDSLRGF 117 Query: 119 FDVLTQYSIECLV 131 +D L Q+S+ LV Sbjct: 118 YDSLNQHSLAELV 130 >gi|262373529|ref|ZP_06066807.1| transcriptional regulator [Acinetobacter junii SH205] gi|262311282|gb|EEY92368.1| transcriptional regulator [Acinetobacter junii SH205] Length = 150 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A ++ P I+ IA+ +S+ L KI+ + K + T RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSEIPYTIADIAKDLHVSQNHLVKIVHFMGKQQWIVTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + ++V+ + + EC C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPSARTLRLGEIVRVLQGHQQIVECNTP---PCVLRSQCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRN 133 L QY++ +V++ Sbjct: 118 SLDQYTLGEVVQH 130 >gi|254471392|ref|ZP_05084794.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] gi|211959538|gb|EEA94736.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] Length = 131 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + D RI Q+ + S + K++ L +AGI+ET+RGR GG +L R A I++ DV Sbjct: 1 MQPDVIQRIDQVVQQQGFSRGHVMKLVNQLSRAGILETMRGRGGGFKLGRLAKHISVGDV 60 Query: 79 VKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 V+A E F V EC +I C + SC L ++++A +AF DVL + +IE Sbjct: 61 VRAVENDFAVVECLRQSECGEIHCCFLPSCRLKPLMQRASSAFLDVLDEMTIE 113 >gi|320159424|ref|YP_004172648.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] gi|319993277|dbj|BAJ62048.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] Length = 136 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 10/109 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +T++ DY +R ++Y A + PN+ SQIAE I FL KI+ L AG++ T Sbjct: 1 MQITRQADYALRAMVYLARLS--PNQRASTSQIAEEQHIPPSFLAKIISQLSIAGLIHTS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPL 101 RG RGGV L RP ++IT+LDVV+A + + EC + + DCP+ Sbjct: 59 RGARGGVTLARPPEEITVLDVVEAIDGPIALNECTSPSGVCMFGEDCPM 107 >gi|289664563|ref|ZP_06486144.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671188|ref|ZP_06492263.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 152 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A H D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAAHCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSIECLVR 132 L + ++ +++ Sbjct: 121 ALRRVTLAQMLQ 132 >gi|240140269|ref|YP_002964747.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254562849|ref|YP_003069944.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens DM4] gi|240010244|gb|ACS41470.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254270127|emb|CAX26117.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens DM4] Length = 158 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y +H + I++IA A ISE L K++ L + G++ T RGR Sbjct: 1 MRLTRYTDYALRALIYLGLHEPQQSSIAEIARAYGISESHLTKVVHQLGRLGLIRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R AD+I I VV+ TE+ + ECFA C + C L L +AL AF Sbjct: 61 GGGLHLGRRADEIVIGAVVRQTEDDLALVECFAGGA--CAITAPCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLVRNRSS 136 VL Y++ L+ + + Sbjct: 119 VLDGYTLADLLGDEAG 134 >gi|260549846|ref|ZP_05824062.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407096|gb|EEX00573.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 148 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRILMYIARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGAIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSI-ECLVRNRSS 136 L Q+++ E L + +S+ Sbjct: 121 SLDQHTLGEVLQQPKSA 137 >gi|89900669|ref|YP_523140.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345406|gb|ABD69609.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 169 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 73/127 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVLM+CA++ + I+++AE+ IS+ L K++ L + G+++T RGR Sbjct: 1 MRLTDYTDYTLRVLMFCALNPERSVTIAELAESHAISKNHLMKVVNDLARQGLLQTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA I I DVV+ TE F + ECF C L C L V A F Sbjct: 61 GGGLRLLKPAADIRIGDVVRQTETDFRLVECFDPGHNTCTLTAQCQLKQVFWTAKQNFLA 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 ELDKVTL 127 >gi|323137714|ref|ZP_08072790.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] gi|322397011|gb|EFX99536.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] Length = 150 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 67/127 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D R L++ + + I +I+ A SE L K+ LVK ++ RGR Sbjct: 1 MRLTTHSDLAFRTLIFLGVAGERGATIPEISSAFGASEHHLRKVAFELVKLELIRATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L Q+TI ++++ E F +EC + + C + G+CGL V ++L A F Sbjct: 61 NGGLALNISPAQVTIGELLRKLEPEFAESECLGAGQKGCVIFGACGLQRVFNESLGALFG 120 Query: 121 VLTQYSI 127 VL +Y++ Sbjct: 121 VLDRYTL 127 >gi|87118174|ref|ZP_01074073.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121] gi|86165808|gb|EAQ67074.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121] Length = 147 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R LMY +I + + + ++A S+ K++ L K G V+++RG Sbjct: 1 MRLTAFTDFGLRTLMYLTSIPTEQLSSVPEVARVYGASQNHFVKVIGQLTKLGYVQSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I I V++ E C K C + C L L A+ AF Sbjct: 61 KNGGIRLAKKAEDINIGKVIRELENHLDAVNCT---KPVCQIASCCELKHALALAMEAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + QYS+ +V N+ + ++ + Sbjct: 118 STMEQYSLADIVHNKPELIPLWQS 141 >gi|253991548|ref|YP_003042904.1| transcriptional repressor NsrR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638426|emb|CAR67048.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782998|emb|CAQ86163.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 141 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A+ IS++ + +S + KI+ L G+V+ VRG Sbjct: 1 MQLTSFTDYGLRALIYMAALPQSQMTSISEVTDVYGVSRNHMVKIINQLSHLGLVDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+A E V C C + +C L VL +A F Sbjct: 61 KNGGIRLGKPAKDIRIGDVVRALEPLSLV-NCSQE---SCHITSACRLKVVLNQAAEKFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L ++++ +V + + K+ Sbjct: 117 EELDKHTLADMVEDNIPLYKLL 138 >gi|188535079|ref|YP_001908876.1| transcriptional repressor NsrR [Erwinia tasmaniensis Et1/99] gi|188030121|emb|CAO98007.1| Putative negative regulator [Erwinia tasmaniensis Et1/99] Length = 141 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V +RG Sbjct: 1 MQLTSFTDYGLRALIYLASLPAGRMTSISEVTEIYGVSRHHMVKIINQLSRAGYVSALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA +I I VV+ T E + C + C + +C L + L +A+ +F Sbjct: 61 KNGGILLGKPAAEIVIGQVVR-TLEPLQLVNCSSEF---CHITAACRLKTALHEAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ LV + + KI Sbjct: 117 RELDQYTLADLVEDNHPLYKIL 138 >gi|59712922|ref|YP_205698.1| transcriptional repressor NsrR [Vibrio fischeri ES114] gi|197336033|ref|YP_002157111.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11] gi|75353317|sp|Q5E2D6|NSRR_VIBF1 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737681|sp|B5FBQ6|NSRR_VIBFM RecName: Full=HTH-type transcriptional repressor nsrR gi|59481023|gb|AAW86810.1| nitrite-responsive HTH-type transcriptional repressor NsrR [Vibrio fischeri ES114] gi|197317523|gb|ACH66970.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11] Length = 141 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y ++ I+ + E +S + KI+ L + G V+T+RG Sbjct: 1 MQLTNFTDFGLRALIYLGSLPEGELTSITVVTETFDVSRNHMVKIINKLGQEGYVKTIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PADQI I DV++A E V C C + +C L L KA AF Sbjct: 61 KNGGICLGKPADQIIIGDVIRAI-EPLQVVNCAPEF---CHITPACRLKGALAKAKQAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 D L +++I+ ++ + S + Sbjct: 117 DELDKHTIQDMLTDNSEL 134 >gi|172057146|ref|YP_001813606.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989667|gb|ACB60589.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 146 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 15/145 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IR L++ + D RI ++A+ IS+ L K++ L + G++ +VRGR Sbjct: 1 MRMTRYTDYAIRSLLFAGANADRLVRIQEVADCYDISKNHLMKVVYRLGQNGLIHSVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV------LRKA 114 GG RL P D+I I DVV+ E + +H +D PL G+ L S+ A Sbjct: 61 GGGFRLASPPDEIYIGDVVQLFEPT--------THFLD-PLEGTSELPSLDPARDAFDDA 111 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139 + AF VL Y+I L+ +S + Sbjct: 112 IAAFHQVLNSYTINDLLHPTNSTHR 136 >gi|313905467|ref|ZP_07838831.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469651|gb|EFR64989.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 144 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+H N P RI I+ IS +L +I+ LV+A +++VRG Sbjct: 1 MKISTKGRYALRMMLDIALHDNGVPVRIKDISARQEISLKYLEQIVSALVRAKYLKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + A + T+ D+++ TE S EC A DCP GSC + + A Sbjct: 61 PQGGYLLAKKASEYTVGDILRVTEGSLSPVECLAGDVNDCPRRGSCVTLRLWEELDEAIS 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 V+ Y+IE L K +NAG Sbjct: 121 KVVDSYTIEDL--------KNWNAG 137 >gi|242238239|ref|YP_002986420.1| transcriptional repressor NsrR [Dickeya dadantii Ech703] gi|242130296|gb|ACS84598.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech703] Length = 141 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + I+++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGKMTSITEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E V C +H+ C + +C L VLR+A+ F Sbjct: 61 KNGGIRLGRDPATIRIGDVVRELEPLALV-NC--NHEF-CHITSACRLKQVLRQAVEQFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V+ + ++ Sbjct: 117 QELDNYTLADMVKENPPLYQLL 138 >gi|289208246|ref|YP_003460312.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thioalkalivibrio sp. K90mix] gi|288943877|gb|ADC71576.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. K90mix] Length = 143 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD+ +RVLMY + +D ++ I+E I L KI+ L + G + T RG Sbjct: 1 MQLTRFTDFSLRVLMYLTVQPDDQRVTVTDISERFGIPRNHLVKIVHQLGQKGYLITRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L R + I I VV+ E + V +C + CP++ C L VL A +AF Sbjct: 61 KGGGISLARAPESINIGAVVRDMEPNLKVVDCESPM---CPILPGCQLRGVLDDARDAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY++ + ++ ++ + Sbjct: 118 AVLDQYTVRDVTQSPEHLRSLL 139 >gi|218551448|ref|YP_002385240.1| transcriptional repressor NsrR [Escherichia fergusonii ATCC 35469] gi|226737671|sp|B7LLW0|NSRR_ESCF3 RecName: Full=HTH-type transcriptional repressor nsrR gi|218358990|emb|CAQ91650.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|324112225|gb|EGC06203.1| transcriptional regulator [Escherichia fergusonii B253] gi|325499713|gb|EGC97572.1| transcriptional repressor NsrR [Escherichia fergusonii ECD227] Length = 141 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|46914863|emb|CAG21640.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 151 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V+TVRG Sbjct: 8 VQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRG 67 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNA 117 + GG+RL PA++I + DVV+ATE V +E F C + +C L +L A +A Sbjct: 68 KNGGIRLGMPANRIILGDVVRATEPLQIVNCSEDF------CHITPACQLKGILASARSA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 F L ++++ L+ N + Sbjct: 122 FLAELDKHTLLSLIDNNPPL 141 >gi|325266572|ref|ZP_08133249.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394] gi|324982015|gb|EGC17650.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394] Length = 157 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT++TDY +RVL+Y AI+N+ I++IA+ IS+ L K++ LVK G + +VRG+ Sbjct: 11 MHLTQQTDYALRVLIYTAINNEGLVNIAEIAKTYDISKSHLMKVVTALVKGGFLHSVRGK 70 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + +QI + DVV+ T E +AECF + +C + C L ++L L F Sbjct: 71 GGGLRLGKEPEQIRVGDVVRLT-EPMVIAECFGENN-ECIISPHCRLANILNSGLKLFLM 128 Query: 121 VLTQYSIECLVR 132 L Y++ L+ Sbjct: 129 HLDNYTLADLLN 140 >gi|261342839|ref|ZP_05970697.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC 35316] gi|288314881|gb|EFC53819.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC 35316] Length = 141 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPAGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I + DVV+ E V C ++ C + +C L L +A+ +F Sbjct: 61 KNGGIRLGKPAQSIRVGDVVRELEPLSLV-NCSSAF---CHITPACRLKQALSQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|282600062|ref|ZP_05972854.2| transcriptional repressor NsrR [Providencia rustigianii DSM 4541] gi|282566903|gb|EFB72438.1| transcriptional repressor NsrR [Providencia rustigianii DSM 4541] Length = 142 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A+ I+++ + +S + KI+ L G ++ VRG Sbjct: 3 VQLTSFTDYGLRALIYLAALEKGKMTSITEVTDVYGVSRNHMVKIINQLSHLGYIKAVRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA+ I I DVV+A E V C C + +C L L KA+ F Sbjct: 63 KNGGISLGQPAESIRIGDVVRALEPLTLV-NCSGEF---CHITPACRLKGALNKAIQQFL 118 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V++ S + ++ Sbjct: 119 QELDQYTLADMVKDNSPLYQLL 140 >gi|311281270|ref|YP_003943501.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] gi|308750465|gb|ADO50217.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] Length = 141 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRVGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E V C + C + +C L L A+ +F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSNAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138 >gi|149201796|ref|ZP_01878770.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035] gi|149144844|gb|EDM32873.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035] Length = 156 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57 M LTK TDY +RVL+Y A P ++ I E IS L K++ L+ G +E + Sbjct: 1 MRLTKFTDYSLRVLLYAATLK--PGELTTIEETAKLYDISRAHLKKVVLQLIHEGFLEGI 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG RL R +I + VV+ E F +AECF+ C + C L VL AL Sbjct: 59 RGRSGGFRLARSPGEINLGQVVRKMEPEFALAECFSPDNA-CRVTKGCRLPIVLNLALTN 117 Query: 118 FFDVLTQYSIECLV 131 F + +++ L Sbjct: 118 FLNTFDDFTLADLA 131 >gi|152973049|ref|YP_001338195.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580843|ref|YP_002240865.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342] gi|238892663|ref|YP_002917397.1| transcriptional repressor NsrR [Klebsiella pneumoniae NTUH-K2044] gi|288937522|ref|YP_003441581.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Klebsiella variicola At-22] gi|290512260|ref|ZP_06551627.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55] gi|189030887|sp|A6TH94|NSRR_KLEP7 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737672|sp|B5Y324|NSRR_KLEP3 RecName: Full=HTH-type transcriptional repressor nsrR gi|150957898|gb|ABR79928.1| conserved protein, Winged helix domain [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569901|gb|ACI11677.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342] gi|238544979|dbj|BAH61330.1| putative HTH-type transcriptional repressor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288892231|gb|ADC60549.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola At-22] gi|289775255|gb|EFD83256.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55] Length = 141 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA QI + DVV+ E V C + C + +C L L +A +F Sbjct: 61 KNGGIRLGKPAGQIRVGDVVRDLEPLSLV-NCSSEF---CHITPACRLKQALAEAAQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138 >gi|325915080|ref|ZP_08177408.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas vesicatoria ATCC 35937] gi|325538692|gb|EGD10360.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas vesicatoria ATCC 35937] Length = 152 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A + S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARSGEVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A QIT++++V+A E + EC H C + +CG+ S R + D Sbjct: 62 HGGYRLARDAGQITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSIECLVR 132 L + ++ +++ Sbjct: 121 ALRRVTLAQMLQ 132 >gi|37528395|ref|NP_931740.1| transcriptional repressor NsrR [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418099|sp|Q7MYU4|NSRR_PHOLL RecName: Full=HTH-type transcriptional repressor nsrR gi|36787833|emb|CAE16948.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 141 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L G+V+ VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPQSRMTSISEVTDIYGVSRNHMVKIINQLSHLGLVDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+A E V C C + +C L VL +A+ F Sbjct: 61 KNGGIRLGKPAKDIRIGDVVRALEPLSLV-NCSQE---SCHITSACRLKVVLNQAIERFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L ++++ ++ + + K+ Sbjct: 117 EELDKHTLADMIEDNIPLYKLL 138 >gi|21232196|ref|NP_638113.1| hypothetical protein XCC2765 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767675|ref|YP_242437.1| hypothetical protein XC_1348 [Xanthomonas campestris pv. campestris str. 8004] gi|21113952|gb|AAM42037.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573007|gb|AAY48417.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 152 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A +D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 62 HGGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 ALRRVTL 127 >gi|319786706|ref|YP_004146181.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Pseudoxanthomonas suwonensis 11-1] gi|317465218|gb|ADV26950.1| transcriptional regulator, BadM/Rrf2 family [Pseudoxanthomonas suwonensis 11-1] Length = 154 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 66/122 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A +++AE + + + K+L+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSAAELAEQSGLEQPTVSKLLKPLAQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL R AD+IT++++V+A E + EC + C + CG+ S R + D Sbjct: 62 RGGYRLSRDADRITLIEIVEAMEGPLAMTECSQAGANQCGIAHQCGVRSNWRLINDVVAD 121 Query: 121 VL 122 L Sbjct: 122 AL 123 >gi|270158902|ref|ZP_06187558.1| rrf2 family protein [Legionella longbeachae D-4968] gi|289166311|ref|YP_003456449.1| DNA-binding transcriptional regulator [Legionella longbeachae NSW150] gi|269987241|gb|EEZ93496.1| rrf2 family protein [Legionella longbeachae D-4968] gi|288859484|emb|CBJ13439.1| DNA-binding transcriptional regulator [Legionella longbeachae NSW150] Length = 148 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + + I I +A IS + KI+ L K G+++T RG+ Sbjct: 1 MQLTQFTDYSLRALIYITLRKESCT-IKDITDAYTISNNHMVKIIHNLAKLGLIKTSRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E F + CF K +C + C L +L +A AF Sbjct: 60 GGGILIAVQPETINLGKLIAQLEPHFDLVPCFNKEKANCCIAPVCRLKGILHEAQTAFMK 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ ++ N + + N Sbjct: 120 VLERYTLADVLHNPKELSVLLN 141 >gi|93006349|ref|YP_580786.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394027|gb|ABE75302.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter cryohalolentis K5] Length = 181 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 41/182 (22%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT +DY +R L+Y A + P IS IA + IS+ L KI+Q L + G +++V Sbjct: 1 MRLTNYSDYALRSLIYLATKPE-PTLLANISDIANSYHISKSHLTKIIQQLGQLGYIDSV 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------------- 98 RG+ GG+RL I + +++K E F + ECF+++ +D Sbjct: 60 RGKNGGIRLAHAPKDINLGELIKKIEPDFALVECFSTNSLDSSIADINSAVINDEKNASA 119 Query: 99 ------------------CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 C + C L VL +AL AF VL +Y++ ++ N+ + + Sbjct: 120 NDMSLKLIDETVSHIASGCIISPVCQLKQVLAEALTAFIAVLERYTLADIIENKDELAAL 179 Query: 141 FN 142 + Sbjct: 180 LS 181 >gi|291614830|ref|YP_003524987.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584942|gb|ADE12600.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans lithotrophicus ES-1] Length = 152 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 69/127 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A I++I++ IS L K++ L + T RG+ Sbjct: 1 MRLTIYTDYSLRVLLYLASKPGETATITEISDFYNISRNHLVKVVHNLGLNEFIITSRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L R A+ I + DVV+ TE + ECF +C + +C L S+L + +AF Sbjct: 61 NGGIKLARAAEAILLSDVVRKTEPDMDLLECFNESTDNCVISSACRLKSMLYEGRSAFMA 120 Query: 121 VLTQYSI 127 VL + ++ Sbjct: 121 VLEKNTL 127 >gi|254459475|ref|ZP_05072891.1| HTH-type transcriptional regulator NsrR [Rhodobacterales bacterium HTCC2083] gi|206676064|gb|EDZ40551.1| HTH-type transcriptional regulator NsrR [Rhodobacteraceae bacterium HTCC2083] Length = 115 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 55/94 (58%) Query: 42 FKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 KI+ L +AG + T RGR GG RL +PA++I + DVV+ TE + ECF CPL Sbjct: 1 MKIVHELGQAGYIVTQRGRGGGFRLAKPAEEIVVGDVVRLTEGPLNLVECFNLENNTCPL 60 Query: 102 VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 +G C L+ L++A AF VL ++ + NRS Sbjct: 61 IGICKLSRSLQEATRAFMAVLDDLTLADIASNRS 94 >gi|188990792|ref|YP_001902802.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas campestris pv. campestris str. B100] gi|167732552|emb|CAP50746.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas campestris pv. campestris] Length = 152 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A +D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 62 HGGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 ALRRVTL 127 >gi|285017824|ref|YP_003375535.1| transcriptional regulator, rrf2 family transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283473042|emb|CBA15547.1| hypothetical transcriptional regulator, rrf2 family transcription regulator protein [Xanthomonas albilineans] Length = 152 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLNVLAARPTEVLSATELAEQAGLEPPTVSKLLKPLAQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA+ IT++++V+A E + EC + H C + +CG+ S R + D Sbjct: 62 HGGYRLARPANAITLIEIVEAMEGPLAITEC-SHHGNQCNITHTCGVRSNWRLINDVIAD 120 Query: 121 VLTQYSIECLVR 132 L ++ ++R Sbjct: 121 ALGGVTLAQMLR 132 >gi|328950902|ref|YP_004368237.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus hydrothermalis DSM 14884] gi|328451226|gb|AEB12127.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus hydrothermalis DSM 14884] Length = 155 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + P + +AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRGPGPVPLKDVAEAQEISQHYLEQIAAALRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL R + IT L+VV+A E S C + C VG C ++ ++ A + Sbjct: 61 KGGYRLARSPENITALEVVEAMEGSLAPVSCLEDPE-SCWQVGHCSTENLWKRVDAAMRE 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL + ++ L+ R I+ Sbjct: 120 VLGKTTLRDLIEERRLIE 137 >gi|260599473|ref|YP_003212044.1| transcriptional repressor NsrR [Cronobacter turicensis z3032] gi|260218650|emb|CBA33971.1| HTH-type transcriptional repressor nsrR [Cronobacter turicensis z3032] Length = 141 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C ++ C + +C L VL A+ F Sbjct: 61 KNGGIRLGKPAATIRIGDVVREL-EPLSIVNCSSAF---CHITPACRLKQVLGDAVARFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV+ + K+ Sbjct: 117 QELDNYTLADLVQENQPLYKLL 138 >gi|308048583|ref|YP_003912149.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307630773|gb|ADN75075.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica DSM 9799] Length = 144 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D+ R L+Y + + IS++ E +S + K++ L AG V TVRG Sbjct: 1 MQLTSFSDFAFRALIYLGTLPKEELTSISRVTEVYGVSRNHMVKVINKLGHAGFVTTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG+RL + +I + DVV+A E V +C + C +V +C L VL +A NAF Sbjct: 61 KKGGIRLAKAPAEIGLGDVVRALEPLKLV-DCGSPF---CHIVPACRLKGVLEEATNAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L QY++ ++ N + Sbjct: 117 AALDQYTLADMLSNNPHL 134 >gi|322418655|ref|YP_004197878.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320125042|gb|ADW12602.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 136 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT++ +Y IR ++Y A P R IS+IA A + + FL KI Q K G+V + Sbjct: 2 MELTRKGEYAIRGIIYLA--QQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSS 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RPA IT+ +VV+A E C C G C + + ++ Sbjct: 60 RGTGGGFVLARPASAITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHLIWKRVQTE 117 Query: 118 FFDVLTQYSIECLVRN 133 D+L +I+ L RN Sbjct: 118 VVDILDSVTIDTLARN 133 >gi|134291578|ref|YP_001115347.1| BadM/Rrf2 family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134767|gb|ABO59092.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia vietnamiensis G4] Length = 170 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 11/134 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVET 56 MHLT TDY +RV+MY A+ YP + I +IA A IS L K++ L + G +ET Sbjct: 1 MHLTLYTDYTLRVMMYLAL--KYPGGGVSTIDEIAGAYGISRNHLTKVVHELSQLGFIET 58 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRK 113 RGR GG L R +QI++ ++V+ E+ F V C +H C + C L L + Sbjct: 59 SRGRAGGACLARAPEQISVGEIVRTAEKDFAVVSCHDMTVAH--GCTIFPVCNLRHRLYR 116 Query: 114 ALNAFFDVLTQYSI 127 A++AF L ++ Sbjct: 117 AVDAFLHELDTMTL 130 >gi|89094369|ref|ZP_01167310.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92] gi|89081428|gb|EAR60659.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92] Length = 143 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVL Y A ++ +S+IA+ IS L K++ L KAG + T RG+ Sbjct: 1 MQLSRFTDYTLRVLFYVATNDKRLVTLSEIAKCYDISVEHLRKVVHALSKAGHLATFRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + +I I +V+ E + C C L G C L SVL +A AF Sbjct: 61 NGGIKLAKHPSEINIGEVIAEAEGRQPLINCGQQM---CRLTGFCTLQSVLGEAQTAFMR 117 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL QY++ ++ + + + N Sbjct: 118 VLDQYTLADMLESTDMRESLIN 139 >gi|34581534|ref|ZP_00143014.1| hypothetical protein [Rickettsia sibirica 246] gi|28262919|gb|EAA26423.1| unknown [Rickettsia sibirica 246] Length = 142 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDYG+R L+Y A P RI +I+E IS L K++ L + G + + Sbjct: 1 MQLTSVTDYGLRSLIYLA---SKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G+ GG++L + + D+++ E + + ECF + C + SC +++A A Sbjct: 58 KGKGGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEA 117 Query: 118 FFDVLTQYSIE 128 F L Y++E Sbjct: 118 FIKTLNNYTLE 128 >gi|291327130|ref|ZP_06127096.2| transcriptional repressor NsrR [Providencia rettgeri DSM 1131] gi|291311664|gb|EFE52117.1| transcriptional repressor NsrR [Providencia rettgeri DSM 1131] Length = 142 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + I+++ E +S + KI+ L G ++ RG Sbjct: 3 VQLTSFTDYGLRALIYLASLGEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYIKATRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA+ I I DVV+A E V C C + +C L VL +A+ F Sbjct: 63 KNGGITLGQPAESIRIGDVVRALEPLTLV-NCSGEF---CHITPACRLKGVLHQAIQQFL 118 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V++ S + ++ Sbjct: 119 QELDQYTLADMVKDNSPLYQLL 140 >gi|283786857|ref|YP_003366722.1| transcriptional repressor [Citrobacter rodentium ICC168] gi|282950311|emb|CBG89958.1| transcriptional repressor [Citrobacter rodentium ICC168] Length = 141 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG + +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFITAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKAANTIRIGDVVRELEPLSLV-NCNSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEQNQPLYKLL 138 >gi|307544373|ref|YP_003896852.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581] gi|307216397|emb|CBV41667.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581] Length = 169 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 4/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L++ TDY V+ A H + P+ +++AEA + + K L+ LV+AG++E+ RG Sbjct: 18 LKLSRLTDYAAVVMAQIARHPEQPHAAAELAEAVSLPHPTVSKTLKMLVRAGLLESRRGA 77 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALNA 117 +GG L RPA +I+ D++ A E + EC + DC LV CG++ ++ A+ Sbjct: 78 QGGYSLARPASRISASDIISAIEGPVAMTECSQAEG-DCDLVSVCGVSDNWQRVSLAVRT 136 Query: 118 FFDVLT 123 D +T Sbjct: 137 LLDSVT 142 >gi|297537962|ref|YP_003673731.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301] gi|297257309|gb|ADI29154.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301] Length = 153 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +RVLMY P I++IAE + L K++ L K G V RG Sbjct: 1 MQLTKFTDLSLRVLMYLTQEERLMPVTINEIAEQFTVPRNHLIKVVTRLNKLGWVSATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL A+Q+ + +V++ E + + +C K C L G+C L +L L AF+ Sbjct: 61 RNGGLRLGVQANQLKLGNVLQELENASALIDCA---KPPCALKGNCHLKEILDIGLKAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 + + +S+ +V +++ Sbjct: 118 EHMNTFSLADVVNHKTQ 134 >gi|229586877|ref|YP_002845378.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|228021927|gb|ACP53635.1| Putative transcriptional regulator [Rickettsia africae ESF-5] Length = 142 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDYG+R L+Y A P RI +I+E IS L K++ L + G + + Sbjct: 1 MQLTSFTDYGLRSLIYLA---SKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G+ GG++L + + D+++ E + + ECF + C + SC +++A A Sbjct: 58 KGKGGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEA 117 Query: 118 FFDVLTQYSIE 128 F L Y++E Sbjct: 118 FIKTLNNYTLE 128 >gi|271501898|ref|YP_003334924.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii Ech586] gi|270345453|gb|ACZ78218.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech586] Length = 141 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E V C K C + +C L VL++A+ F Sbjct: 61 KNGGIRLGRDPSTIRIGDVVRELEPLSLV-NC---SKAFCHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + K+ Sbjct: 117 KELDNYTLADMVEQNPHLYKLL 138 >gi|307132423|ref|YP_003884439.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937] gi|306529952|gb|ADM99882.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937] Length = 141 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E + C K C + +C L VL++A+ F Sbjct: 61 KNGGIRLGRDPSTIRIGDVVREL-EPLSLVNC---SKEFCHITSACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + K+ Sbjct: 117 KELDNYTLADMVEENPPLYKLL 138 >gi|320105376|ref|YP_004180966.1| BadM/Rrf2 family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319923897|gb|ADV80972.1| transcriptional regulator, BadM/Rrf2 family [Terriglobus saanensis SP1PR4] Length = 164 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHN----DYPNRIS-------QIAEACCISELFLFKILQPLV 49 + LTK+ DYG+ L Y A ++P + IAEA I L KILQ L Sbjct: 2 LRLTKKADYGLMALKYLAEQAVAAAEHPESVPAHAQSAKDIAEAYHIPPQLLAKILQTLA 61 Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 +AGI+ + G GG L R A +IT +V++A + F+ C H C L G C + Sbjct: 62 RAGILVSHAGTNGGYSLARSATEITAFEVIRAIDGPLFITSCITIHGT-CDLAGHCTIKE 120 Query: 110 VLRKALNAFFDVLTQYSIECLV 131 LRK ++ D+L+ I LV Sbjct: 121 PLRKVNDSIKDLLSGIRISDLV 142 >gi|296136896|ref|YP_003644138.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] gi|295797018|gb|ADG31808.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] Length = 146 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D+G+R L+ A ++A IS L K+LQ L G V+T RG Sbjct: 1 MRLTSFSDFGLRALLVLAGSERETWSSVELAAKLDISRDHLIKVLQRLAAGGYVQTTRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I I +V++ E+ + ECF C L G C L L +A AF+ Sbjct: 61 GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120 Query: 121 VLTQYSI-ECL 130 L + ++ +CL Sbjct: 121 ALNETTLADCL 131 >gi|251788403|ref|YP_003003124.1| transcriptional repressor NsrR [Dickeya zeae Ech1591] gi|247537024|gb|ACT05645.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591] Length = 141 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E V C K C + +C L VL++A+ F Sbjct: 61 KNGGIRLGRDPSTIRIGDVVRELEPLSLV-NC---SKEFCHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + K+ Sbjct: 117 TELDNYTLADMVEENPPLYKLL 138 >gi|121999002|ref|YP_001003789.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121590407|gb|ABM62987.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 151 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y + + +IA A IS+ L K++ L + G ++T +GR Sbjct: 1 MELTYYTDYALRVLLYAGAQGERRVPMREIARAYGISQDHLRKVVHRLARHGYLQTTQGR 60 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL C P I + DVV+ E+S + C + CPL G C L L A + F Sbjct: 61 SGGLRLGCAPG-AIRVGDVVRLMEDSLELIHC---DRGPCPLCGHCSLKRALNGARDQFI 116 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L ++E L+ + + +++ Sbjct: 117 QHLDGVTLEELLADPGTAQQL 137 >gi|90581369|ref|ZP_01237165.1| hypothetical protein VAS14_18794 [Vibrio angustum S14] gi|90437479|gb|EAS62674.1| hypothetical protein VAS14_18794 [Vibrio angustum S14] Length = 144 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G +ETVRG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I + DVV+A E + C C + +C L VL A AF Sbjct: 61 KNGGIRLGKSAESIIVGDVVRAI-EPLQIVNCSLDF---CHITPACRLKGVLADAREAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L +Y++ LV + + + + + Sbjct: 117 AELDKYTLLTLVEDNAPLLNLLS 139 >gi|326316430|ref|YP_004234102.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373266|gb|ADX45535.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 168 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA P I+++A IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL PA I + DVV+ TE F + ECF C L G C L L +A +F Sbjct: 61 GRGGGLRLRVPAADIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSF 120 Query: 119 FDVLTQYSIECLV 131 VL ++ LV Sbjct: 121 LAVLDGVTLADLV 133 >gi|67459267|ref|YP_246891.1| putative transcriptional regulator [Rickettsia felis URRWXCal2] gi|67004800|gb|AAY61726.1| Putative transcriptional regulator [Rickettsia felis URRWXCal2] Length = 142 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 66/128 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERVCSVKEISEYYNISLNHLVKVIHKLAQLGYINSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + + D+++ E + + ECF + C + SC +++A AF Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120 Query: 121 VLTQYSIE 128 L Y++E Sbjct: 121 TLNNYTLE 128 >gi|294341067|emb|CAZ89464.1| putative Transcriptional regulator [Thiomonas sp. 3As] Length = 146 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D+G+R L+ A ++A IS L K+LQ L G V+T RG Sbjct: 1 MRLTSFSDFGLRALLVLAGSERETWSSVELATKLDISRDHLIKVLQRLAAGGYVQTTRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I I +V++ E+ + ECF C L G C L L +A AF+ Sbjct: 61 GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120 Query: 121 VLTQYSI-ECL 130 L + ++ +CL Sbjct: 121 ALNETTLADCL 131 >gi|237703845|ref|ZP_04534326.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 3_2_53FAA] gi|332280962|ref|ZP_08393375.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp. D9] gi|226901757|gb|EEH88016.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 3_2_53FAA] gi|332103314|gb|EGJ06660.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp. D9] Length = 161 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 21 VQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 81 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 136 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 137 TELDNYTLADLVEENQPLYKLL 158 >gi|296100945|ref|YP_003611091.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055404|gb|ADF60142.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 158 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG Sbjct: 18 VQLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRG 77 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L A+ +F Sbjct: 78 KNGGIRLGKPAQSIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSLAVQSFL 133 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 134 KELDNYTLADLVEENQPLYKLL 155 >gi|281355327|ref|ZP_06241821.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] gi|281318207|gb|EFB02227.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] Length = 148 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R+L+ A+++ + P I I+E+ ISE ++ +++ L KAG+V+++RG Sbjct: 1 MKISTKGRYGLRILLDLALNDSEKPRMIRDISESQHISEKYISRLIIELRKAGMVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG R+ R +IT+LDVV+ E + +C ++ CP + SC + + N Sbjct: 61 SKGGYRISREPKEITLLDVVEVMEGPVSIVDCVSARDC-CPRIASCVTREIWTELNNQIR 119 Query: 120 DVLTQYSIECLV 131 + L + +++ ++ Sbjct: 120 EALQKITLQEII 131 >gi|258514866|ref|YP_003191088.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] gi|257778571|gb|ACV62465.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] Length = 144 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T++T+Y I ++ A D+ I QIA I E+FL K +Q L K+GIV T R Sbjct: 1 MQITRQTEYAIHAVIELAQIPFGDFV-LIRQIANKLNIPEMFLKKTVQALNKSGIVVTQR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GGVRL RP+D++T+ DV+ A E + C + C C + +L++ A Sbjct: 60 GTNGGVRLSRPSDKLTVADVMAAIEGPLMLNVCLGEN-YQCSNKPFCSIHKILQRTQKAV 118 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 L++ + +++N+ ++K Sbjct: 119 LRELSRETFADIIKNKLRLEK 139 >gi|56708970|ref|YP_165015.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56680655|gb|AAV97320.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 160 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K +DY +R+L++ A +IA+ + L KI Q L G VE+VRGR Sbjct: 1 MQISKFSDYALRILIHLATSEGGLMSTREIADLQQLPFNHLAKISQWLTHEGYVESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D I+I +++ +E + EC C + +CGL +L +A AFF Sbjct: 61 HGGMRLALPPDAISIGGLLRKSERGTPLVECMKEGGGCCVMTPACGLLPILIEAQEAFFH 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L +++ ++ ++ + A Sbjct: 121 SLDGSTLQDVLSGNRGMQNLIRA 143 >gi|304396949|ref|ZP_07378829.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] gi|304355745|gb|EFM20112.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] Length = 147 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL PA QI I DVV+ E V +C + C + +C L L A+ F Sbjct: 61 KNGGIRLGMPARQIVIGDVVRKMEPLQLV-DCAS-----CSITPACRLKQALHDAVQRFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + + +I Sbjct: 115 QELDNYTLADLVEGNTPLYEII 136 >gi|196233877|ref|ZP_03132715.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] gi|196222071|gb|EDY16603.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] Length = 153 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 76/143 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L+Y H+ ++A+A IS L K+ + L KAG + RG Sbjct: 1 MQLTTHSDYALRLLIYLTSHSTRKVSTREVADAYGISLNHLTKVAKSLTKAGWLLAARGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + + ++V+ TE + VAECF + CP+ C L +L +A AFFD Sbjct: 61 GGGLTLAPHTREARVGEIVRYTEYTCDVAECFDAKANTCPITSVCRLKPLLYRAQKAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL +IE + RN + IF + Sbjct: 121 VLDTATIEDIARNPGELNAIFES 143 >gi|302878002|ref|YP_003846566.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302580791|gb|ADL54802.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 143 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TD +R L+Y + I+++++A I + L K++ LV AG+V + RGR Sbjct: 1 MQLNLSTDIALRTLIYLGQKKETAT-IAEVSDAFDIVKTHLMKVVMQLVAAGVVVSERGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118 GG+RL R +I + DVV+ E + + C + D CPL+ +C L ++L A AF Sbjct: 60 NGGIRLARNPAEIVVGDVVRLMENNLALLYCMKTDAPDDCCPLMPNCHLRTILFNAQKAF 119 Query: 119 FDVLTQYSIECLV 131 D L ++ L+ Sbjct: 120 LDTLDGNTLADLL 132 >gi|89075977|ref|ZP_01162349.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34] gi|89048326|gb|EAR53905.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34] Length = 144 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G +ETVRG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I + DVV+A E + C C + +C L VL A AF Sbjct: 61 KNGGIRLGKSAESIIVGDVVRAI-EPLQIVNCSVDF---CHITPACRLKGVLADAREAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L +Y++ LV + + + + + Sbjct: 117 AELDKYTLLNLVEDNAPLLNLLS 139 >gi|120610257|ref|YP_969935.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120588721|gb|ABM32161.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli AAC00-1] Length = 167 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 77/145 (53%), Gaps = 2/145 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA P I+++A IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL PA I + DVV+ TE F + ECF C L G C L L +A ++ Sbjct: 61 GRGGGLRLRVPAASIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSY 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143 VL ++ LV ++ + A Sbjct: 121 LAVLDGVTLADLVARPAAAGAVSPA 145 >gi|119386877|ref|YP_917932.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377472|gb|ABL72236.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 182 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L+Y A H D I A A IS L K+ L +AG + +VRGR Sbjct: 48 MRLTSFSDYALRLLIYAARHPDRLVTIEGAALAYDISRSHLTKVANVLTRAGFLNSVRGR 107 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R + + +V++ TE AECF +I P L + +R AL AF Sbjct: 108 SGGLELGRDPAALRLGEVLRVTEPDMAAAECFGPEEIRDP-NRPGALDAAIRDALAAFLQ 166 Query: 121 VLTQYSIECLV 131 V+ + ++ L+ Sbjct: 167 VMDRRTLADLL 177 >gi|300715046|ref|YP_003739849.1| transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661] gi|299060882|emb|CAX57989.1| Transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661] Length = 145 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A+ I+++ EA +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYLAALPAGQMASITEVTEAYGVSRNHMVKIINQLSRAGYVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +I I VV+ E V C C + +C L L A+ +F Sbjct: 61 KNGGIRLGKPASEIVIGQVVREMEPLQLV-NCQP-----CLISPACRLKKALYDAVQSFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ L+ + + K+ Sbjct: 115 AVLDGYTLADLLEDNHPLYKLL 136 >gi|134093901|ref|YP_001098976.1| hypothetical protein HEAR0652 [Herminiimonas arsenicoxydans] gi|133737804|emb|CAL60849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 151 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 9/147 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +D G+RVLMY A P+ ++++A + L K++ L K G ++ VRG Sbjct: 1 MKLTRFSDIGLRVLMYLAREARSPSVTVAEVAMQFDVPHNHLVKVVGALAKMGCIDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L AD++ I DV++ E + +C +I C L C L + L+ + AF+ Sbjct: 61 RNGGIHLAVAADKLLIGDVLRMLEGDTEMVDC---ERIGCRLSSDCLLRNALKVGVEAFY 117 Query: 120 DVLTQYSIECLVRNR-----SSIKKIF 141 D + Y++ +V ++ K+F Sbjct: 118 DAMNLYTLADIVNGNVGEHIGNMHKVF 144 >gi|58581029|ref|YP_200045.1| hypothetical protein XOO1406 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425623|gb|AAW74660.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 152 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC +H C + +CG+ S R + D Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSIECLVR 132 L + ++ +++ Sbjct: 121 ALRRVTLAQMLQ 132 >gi|15892744|ref|NP_360458.1| hypothetical protein RC0821 [Rickettsia conorii str. Malish 7] gi|15619921|gb|AAL03359.1| unknown [Rickettsia conorii str. Malish 7] Length = 142 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDYG+R L+Y A P RI +I+E IS L K++ L + G + + Sbjct: 1 MQLTSFTDYGLRSLIYLA---SKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G+ GG++L + + D+++ E + + ECF + C + SC +++A A Sbjct: 58 KGKGGGIKLAFNPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEA 117 Query: 118 FFDVLTQYSIE 128 F L Y++E Sbjct: 118 FIKTLNNYTLE 128 >gi|84622946|ref|YP_450318.1| hypothetical protein XOO_1289 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577995|ref|YP_001914924.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366886|dbj|BAE68044.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522447|gb|ACD60392.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 152 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC +H C + +CG+ S R + D Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSIECLVR 132 L + ++ +++ Sbjct: 121 ALRRVTLAQMLQ 132 >gi|239946889|ref|ZP_04698642.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of Ixodes scapularis] gi|239921165|gb|EER21189.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of Ixodes scapularis] Length = 142 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDYG+R L+Y A P RI +I+E IS L K++ L + G + + Sbjct: 1 MQLTSFTDYGLRSLIYLA---SKPERICSVKEISEYYNISLNHLVKVIHRLAQLGYINSS 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G+ GG++L + + D+++ E + + ECF + C + SC +++A A Sbjct: 58 KGKGGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEA 117 Query: 118 FFDVLTQYSIE 128 F L Y++E Sbjct: 118 FIKTLNNYTLE 128 >gi|313679818|ref|YP_004057557.1| BadM/Rrf2 family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152533|gb|ADR36384.1| transcriptional regulator, BadM/Rrf2 family [Oceanithermus profundus DSM 14977] Length = 147 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + P + ++AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRGPDPVPLKEVAEAQGISQHYLEQIAAALRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP ++I L+VV+ E S C C G C + R+ A + Sbjct: 61 RGGYRLARPPEEINALEVVETMEGSLSPVGCIEDPG-SCEHEGQCSTELLWRRVDLAIRE 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R I+ Sbjct: 120 VLGSTNLQHLIDERRLIE 137 >gi|182418878|ref|ZP_02950135.1| Rrf2 family protein [Clostridium butyricum 5521] gi|237667382|ref|ZP_04527366.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377161|gb|EDT74729.1| Rrf2 family protein [Clostridium butyricum 5521] gi|237655730|gb|EEP53286.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 150 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A H P I I++ +SE +L ++ PL +A I+ ++RG Sbjct: 1 MKLSTKGRYGVRAMAELAAHYGGAPISIKTISKEQNLSEYYLEQLFSPLRRANIIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG LC+ +IT+ D++ E +A+C + C SC V K N+ Sbjct: 61 AQGGYVLCKAPSEITVGDIMTILEGPIEIADCIDGYA--CDSEHSCATKFVWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 DV+ S++ +V N IKK Sbjct: 119 DVMNSISLQDIVDNYEKIKK 138 >gi|170766851|ref|ZP_02901304.1| transcriptional repressor NsrR [Escherichia albertii TW07627] gi|170124289|gb|EDS93220.1| transcriptional repressor NsrR [Escherichia albertii TW07627] Length = 162 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 22 VQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYDVSRNHMVKIINQLSRAGYVTAVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 82 KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 137 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 138 TELDNYTLADLVEENQPLYKLL 159 >gi|148264218|ref|YP_001230924.1| BadM/Rrf2 family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397718|gb|ABQ26351.1| transcriptional regulator, BadM/Rrf2 family [Geobacter uraniireducens Rf4] Length = 137 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT++ +Y IR ++Y A P + IS+IA A + + FL KI Q K GIV + Sbjct: 2 MELTRKGEYAIRGIIYLA--QQQPGKVSLISEIAHASDVPQTFLAKIFQSFAKLGIVNSS 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RPA IT+ +VV+A E C C G C + V R + Sbjct: 60 RGTGGGFTLGRPAASITLREVVEAVEGPIIPNRCLMGTGY-CDRGGHCNVHQVWRTVQSQ 118 Query: 118 FFDVLTQYSIECLVRNR 134 ++L +IE L + + Sbjct: 119 VVNILDSVTIEELAKQK 135 >gi|85860337|ref|YP_462539.1| rrf2 family protein [Syntrophus aciditrophicus SB] gi|85723428|gb|ABC78371.1| rrf2 family protein [Syntrophus aciditrophicus SB] Length = 184 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R ++ A+H N+ P + IA+ ISE +L++++ PL AG++ + RG Sbjct: 43 MKLSTRGRYGLRFMLDLAVHYNEGPIFLKDIAQRQGISEKYLWQLIHPLKTAGLINSTRG 102 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + + IT+ D+++ E + +C + I C +C +V ++A Sbjct: 103 AHGGYQLAKNPEDITLKDIMQVVEGPLCLVDCVDNASI-CERASTCITRNVWQEATRVIL 161 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L ++E +V+ ++ +K Sbjct: 162 KTLESLTLETMVKRQTEKEK 181 >gi|163743460|ref|ZP_02150839.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10] gi|161383290|gb|EDQ07680.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10] Length = 149 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R+L+ A D I ++ + + KI+ LV+ G V ++RGR Sbjct: 1 MKLNLKTDYALRLLILLATRPDQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV++ R +I + D+V A E + +C + C LVG+C L VL +A AF + Sbjct: 61 SGGVQIGREPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115 Query: 121 VLTQYSIECLVRNRSSI 137 VL Y + L+ + + Sbjct: 116 VLMAYRLSDLIEAPAPV 132 >gi|218295733|ref|ZP_03496529.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus Y51MC23] gi|218243892|gb|EED10419.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus Y51MC23] Length = 148 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRAPEAVPLKEVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL RP +++T L+VV+A E S C + C VG C + R+ A Sbjct: 61 KGGYRLARPPEKVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWRRVDLAMRQ 119 Query: 121 VLTQYSIECLVRNR 134 VL +++ L+ R Sbjct: 120 VLGGTTLKDLIEER 133 >gi|197117656|ref|YP_002138083.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197087016|gb|ACH38287.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 137 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT++ +Y IR ++Y A P R IS+IA A + + FL KI Q K G+V + Sbjct: 2 MELTRKGEYAIRGIIYLA--QQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSS 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RPA QIT+ +VV+A E C C G C + V ++ Sbjct: 60 RGTGGGFVLARPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTE 117 Query: 118 FFDVLTQYSIECLVRN 133 +L +I+ L R+ Sbjct: 118 VVRILDGVTIDSLARS 133 >gi|320450975|ref|YP_004203071.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus SA-01] gi|320151144|gb|ADW22522.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus SA-01] Length = 154 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++AEA IS+ +L +I L ++G + +VRG Sbjct: 7 MWVSTKAQYGLRALVEIGLKAPEAVPLKEVAEAQGISQHYLEQIAAQLRRSGFIRSVRGA 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP +++T L+VV+A E S C + C VG C + ++ A Sbjct: 67 RGGYRLARPPERVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWKRVDLAMRQ 125 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R I+ Sbjct: 126 VLGSTTLKDLIEERKLIE 143 >gi|323699033|ref|ZP_08110945.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. ND132] gi|323458965|gb|EGB14830.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans ND132] Length = 150 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A H D P RI IA+ +S +L K+++ L G V++ RG Sbjct: 1 MKLTTRSRYGTRMMLDIAQHGKDGPVRIQDIADRQGVSAKYLEKLIRKLKDVGFVKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L +PA +I I +VV A E + EC + K C + C + ++A +A + Sbjct: 61 PRGGHSLAKPAAEIPIGEVVHALEGDGSLVECRSGDK-GCSRMKECLTRRLWQEAADAMY 119 Query: 120 DVLTQYSIECLVRN 133 + L +++ L+ + Sbjct: 120 ERLNTFTLADLIND 133 >gi|157155926|ref|YP_001465677.1| transcriptional repressor NsrR [Escherichia coli E24377A] gi|157163642|ref|YP_001460960.1| transcriptional repressor NsrR [Escherichia coli HS] gi|170021812|ref|YP_001726766.1| transcriptional repressor NsrR [Escherichia coli ATCC 8739] gi|194439542|ref|ZP_03071616.1| transcriptional repressor NsrR [Escherichia coli 101-1] gi|209921666|ref|YP_002295750.1| transcriptional repressor NsrR [Escherichia coli SE11] gi|218556730|ref|YP_002389644.1| transcriptional repressor NsrR [Escherichia coli IAI1] gi|253775197|ref|YP_003038028.1| transcriptional repressor NsrR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164107|ref|YP_003047215.1| transcriptional repressor NsrR [Escherichia coli B str. REL606] gi|297517580|ref|ZP_06935966.1| transcriptional repressor NsrR [Escherichia coli OP50] gi|307314874|ref|ZP_07594466.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|312965852|ref|ZP_07780078.1| rrf2 family protein [Escherichia coli 2362-75] gi|189030882|sp|A7ZV48|NSRR_ECO24 RecName: Full=HTH-type transcriptional repressor nsrR gi|189030883|sp|A8A7S3|NSRR_ECOHS RecName: Full=HTH-type transcriptional repressor nsrR gi|189030885|sp|B1IT28|NSRR_ECOLC RecName: Full=HTH-type transcriptional repressor nsrR gi|226736216|sp|B7M8T8|NSRR_ECO8A RecName: Full=HTH-type transcriptional repressor nsrR gi|226737669|sp|B6I282|NSRR_ECOSE RecName: Full=HTH-type transcriptional repressor nsrR gi|157069322|gb|ABV08577.1| transcriptional repressor NsrR [Escherichia coli HS] gi|157077956|gb|ABV17664.1| transcriptional repressor NsrR [Escherichia coli E24377A] gi|169756740|gb|ACA79439.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC 8739] gi|194421541|gb|EDX37554.1| transcriptional repressor NsrR [Escherichia coli 101-1] gi|209914925|dbj|BAG79999.1| conserved hypothetical protein [Escherichia coli SE11] gi|218363499|emb|CAR01153.1| DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|242379700|emb|CAQ34524.1| NsrR transcriptional repressor [Escherichia coli BL21(DE3)] gi|253326241|gb|ACT30843.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976008|gb|ACT41679.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253980164|gb|ACT45834.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|306905677|gb|EFN36206.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|309704683|emb|CBJ04033.1| transcriptional repressor [Escherichia coli ETEC H10407] gi|312289095|gb|EFR16989.1| rrf2 family protein [Escherichia coli 2362-75] gi|315063492|gb|ADT77819.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|323182284|gb|EFZ67694.1| rrf2 family protein family protein [Escherichia coli 1357] gi|323380429|gb|ADX52697.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11] gi|323946026|gb|EGB42063.1| transcriptional regulator [Escherichia coli H120] gi|323960327|gb|EGB55967.1| transcriptional regulator [Escherichia coli H489] gi|323970567|gb|EGB65826.1| transcriptional regulator [Escherichia coli TA007] gi|324118743|gb|EGC12635.1| transcriptional regulator [Escherichia coli E1167] Length = 141 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKSASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|283852245|ref|ZP_06369517.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283572327|gb|EFC20315.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 146 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A+++ P RI IA +S +L K+++ L +AG V + RG Sbjct: 1 MKLTTRSRYGTRMILDMALNDQAGPVRIKDIAARQGVSVKYLEKLVRELKQAGFVRSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L RP ++I++ +V+A E F + EC CP C V +A A Sbjct: 61 PRGGHELARPLEEISVGAIVRALEGEFTLVECDGEAGTPCPRQADCLTREVWAEASRAMH 120 Query: 120 DVLTQYSIECLV-RNRS 135 + L ++ LV R+R+ Sbjct: 121 EKLDAITLADLVGRSRA 137 >gi|51893529|ref|YP_076220.1| putative transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857218|dbj|BAD41376.1| putative transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 146 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ L A+H P + IAE +SE +L ++ PL +AGI+ VRG Sbjct: 1 MKLSTKGKYGVKALFELAMHEGSGPVSLRTIAERQGLSEHYLEQLAAPLRRAGIITAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RPA+QIT+ D+++ E +C + D +C + V + Sbjct: 61 AQGGYMLARPANQITVGDIIRVLEGPIGYTDCATEGEPDPECASTCPVHGVWERVTQQII 120 Query: 120 DVLTQYSIECLV 131 V+ +++ LV Sbjct: 121 AVIDSITLQDLV 132 >gi|78048634|ref|YP_364809.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037064|emb|CAJ24809.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 152 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 ALRRVTL 127 >gi|253701613|ref|YP_003022802.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251776463|gb|ACT19044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 136 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT++ +Y IR ++Y A P R IS+IA A + + FL KI Q K G+V + Sbjct: 2 MELTRKGEYAIRGIIYLA--QQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVSSS 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RPA QIT+ +VV+A E C C G C + V ++ Sbjct: 60 RGTGGGFVLGRPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTE 117 Query: 118 FFDVLTQYSIECLVRN 133 +L +I+ L R+ Sbjct: 118 VVHILDGVTIDLLARS 133 >gi|21243661|ref|NP_643243.1| hypothetical protein XAC2934 [Xanthomonas axonopodis pv. citri str. 306] gi|294626272|ref|ZP_06704875.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664777|ref|ZP_06730103.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21109239|gb|AAM37779.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gi|292599418|gb|EFF43552.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605464|gb|EFF48789.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 152 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 ALRRVTL 127 >gi|144900519|emb|CAM77383.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 157 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ + I++IAE IS+ L K++ L +AG +ETVRG+ Sbjct: 13 MRLTLHTDYALRVLVHVGLRGGELVTINEIAECHGISKNHLTKVVHQLGRAGFLETVRGK 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL + + + V+ E+ F +A+C AS+ C + +C + ++AFF Sbjct: 73 YGGIRLLVDPRTLRLGEFVRQVEDDFALAQCMRASNADSCRVSAACLARRAFGQGIDAFF 132 Query: 120 DVLTQYSIECLV 131 L +++ ++ Sbjct: 133 KALNVHTLADMI 144 >gi|256828389|ref|YP_003157117.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577565|gb|ACU88701.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium baculatum DSM 4028] Length = 138 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT R+ YG R+L+ A++ D + N + IA IS+ ++ K++ L + G++E+ R Sbjct: 1 MRLTTRSRYGTRLLLDIALNQDRGWVN-TTDIARRQKISQKYIEKLITGLRRGGLIESKR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALN 116 G GG +L +PA IT+ DVV++ EE + +C I +C L G C V +A N Sbjct: 60 GPFGGHKLAKPAMDITVGDVVRSLEEKVALTQCAEGEPICGECSLAGECVTQFVWIEASN 119 Query: 117 AFFDVLTQYSIECLV 131 L Y + LV Sbjct: 120 VLMQTLDSYRLGELV 134 >gi|328544668|ref|YP_004304777.1| Rhizobial iron transcriptional regulator protein [polymorphum gilvum SL003B-26A1] gi|326414410|gb|ADZ71473.1| Rhizobial iron transcriptional regulator protein [Polymorphum gilvum SL003B-26A1] Length = 146 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+RTD +R+L++ A+H + +I + + +Q L + G + + GR Sbjct: 1 MRFTERTDIAVRLLLFLALHKGAKLSVDEIVDRYLGHRSQVVAAIQDLRRGGYIGSSPGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGV L R A +IT+ ++V+ E F + CF K C + C L +AL +FF Sbjct: 61 SGGVWLVRSAHEITLAEIVRMFETDFHLTRCFKDGVKARCLIYDVCVFKQALERALGSFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 VL + +I L+ + + ++ G Sbjct: 121 AVLEETTIADLIEDEGRMLQVMEMG 145 >gi|253698991|ref|YP_003020180.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251773841|gb|ACT16422.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 152 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116 +GG L + D+IT+ VV+ATE + +C K +C GSC +V ++ LN Sbjct: 61 PQGGYCLAKSPDEITVRAVVEATEGDTLIVDCAGRKKGECSFDGSCVTQTVWEESNNRLN 120 Query: 117 AFFDVLT 123 FF+ +T Sbjct: 121 EFFESIT 127 >gi|330721810|gb|EGG99788.1| Nitrite-sensitive transcriptional repressor NsrR [gamma proteobacterium IMCC2047] Length = 142 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY RVL+Y ++ + + +IAE + L K++Q L KAG + T+RG Sbjct: 1 MQLTRHTDYAFRVLIYLSSVEEGKLSTVGEIAEIFQVPINHLTKVVQQLGKAGFIITLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + I + VV+A E + C S + C L +C L +L +A+ +F Sbjct: 61 KNGGIRLAHDPESILLGSVVRAMEATLDPVNC--SQPL-CRLKINCRLKPILNRAIQSFI 117 Query: 120 DVLTQYSIECLVRNRS 135 + L +Y++ + +N+ Sbjct: 118 ETLDEYTLADISQNKE 133 >gi|166711249|ref|ZP_02242456.1| hypothetical protein Xoryp_07195 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 152 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A I+++++V+A E + EC +H C + +CG+ S R + D Sbjct: 62 HGGYRLARAASDISLVEIVEAMEGPLAITECSQNHS-QCGIAHTCGVRSNWRLINDVVGD 120 Query: 121 VLTQYSIECLVR 132 L ++ +++ Sbjct: 121 ALRHVTLAQMLQ 132 >gi|325925546|ref|ZP_08186934.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] gi|325544050|gb|EGD15445.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] Length = 172 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 22 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 81 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 82 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 140 Query: 121 VLTQYSIECLVR 132 L + ++ +++ Sbjct: 141 ALRRVTLAQMLQ 152 >gi|330003373|ref|ZP_08304594.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3] gi|328537001|gb|EGF63292.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3] Length = 156 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG Sbjct: 16 VQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA QI + DVV+ E V C + C + +C L L +A +F Sbjct: 76 KNGGIRLGKPAGQIRVGDVVRDLEPLSLV-NCSSEF---CHITPACRLKQALAEAAQSFL 131 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 132 KELDNYTLADLVEKNQPLYKLL 153 >gi|222055720|ref|YP_002538082.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221565009|gb|ACM20981.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 137 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT++ +Y IR ++Y A + P + IS+IA A + + FL KI Q K GI+ + Sbjct: 2 MELTRKGEYAIRGIIYLAQQS--PGKVSLISEIALATDVPQTFLAKIFQSFAKLGIINSS 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RPA IT+ VV+A E C C G C + +V R + Sbjct: 60 RGTGGGFVLGRPASSITLRQVVEAVEGPIIPNRCLMDSGA-CDRGGYCNVHNVWRTVQSN 118 Query: 118 FFDVLTQYSIECLVRNRSS 136 +L +IE L + R+S Sbjct: 119 VIGILDSVTIEELAKPRAS 137 >gi|308188263|ref|YP_003932394.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1] gi|308058773|gb|ADO10945.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1] Length = 147 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A+ I+++ +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDYGLRALIYLAALPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL P QI I DVV+ E V +C + C + +C L L A+ F Sbjct: 61 KNGGIRLGMPPRQIVIGDVVRKMEPLQLV-DCAS-----CSITPACRLKQALHDAVQRFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + + +I Sbjct: 115 QELDSYTLADLVEGNTPLYEII 136 >gi|114566820|ref|YP_753974.1| rrf2 family protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337755|gb|ABI68603.1| transcriptional regulator, BadM/Rrf2 family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 137 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +T++T+Y I++L+ A P+++ IAE I +FL K +Q L +AG+V T Sbjct: 1 MQITRQTEYAIKILIELAKSPFGELIPSKL--IAEQQDIPGMFLQKTVQLLSRAGLVSTQ 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG +GGVRL AD+ITI +V+ A E + C S CP + C + +L +A A Sbjct: 59 RGIQGGVRLTVSADKITIANVITAIEGPLALNLCL-SPGYSCPNMTDCQVRHILGRAQAA 117 Query: 118 FFDVLTQYSIECLVRNR 134 L Q SI +V + Sbjct: 118 LLHELQQESIADIVEGK 134 >gi|290473406|ref|YP_003466272.1| hypothetical protein XBJ1_0326 [Xenorhabdus bovienii SS-2004] gi|289172705|emb|CBJ79476.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 139 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L G+V +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSNLGLVNAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA +I I DVV++ E V C A C + +C L VL +A+ F Sbjct: 61 KNGGISLGKPASEIKIGDVVRSLEPLSLV-NCSA-----CYITPACRLKLVLNQAVENFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L ++++ +V++ + ++ A Sbjct: 115 QELDKHTLADMVKDNRPLYQLLLA 138 >gi|225874112|ref|YP_002755571.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196] gi|225793907|gb|ACO33997.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196] Length = 151 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 + LTK+ DYG+ + Y A H P+R ++ IAEA I L KILQ L + G++ + G Sbjct: 2 LRLTKKADYGLMAVKYLAEHAGEPSRSAKDIAEAYHIPAQLLAKILQKLTREGLLRSHAG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I+ +V++A + F+ C + C L SC + L + + Sbjct: 62 MNGGYSLTRAAKDISAFEVIRAIDGPLFITSCTTGTSV-CDLTASCTIKEPLARVNESII 120 Query: 120 DVLTQYSIECLV 131 D+L + I L+ Sbjct: 121 DLLRKTRISDLM 132 >gi|157371753|ref|YP_001479742.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans 568] gi|157323517|gb|ABV42614.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 180 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T +YGI L++ N ++AE IS FL KI L KAGIV G R Sbjct: 3 YITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RPAD+IT L+++ A E + +C F + D L G C + +V+ Sbjct: 63 GGYRLARPADEITFLEIIDAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVML 122 Query: 113 KALNAFFDVLT 123 +A A D L Sbjct: 123 QAEKAMRDALA 133 >gi|188491831|ref|ZP_02999101.1| transcriptional repressor NsrR [Escherichia coli 53638] gi|188487030|gb|EDU62133.1| transcriptional repressor NsrR [Escherichia coli 53638] Length = 141 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKSASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|149197247|ref|ZP_01874299.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155] gi|149139793|gb|EDM28194.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155] Length = 132 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R+L++ A + + ++++E I++ + +I+ L K G + RGR Sbjct: 1 MRLNLKTDYALRILLHAAKNKEKLITSTEVSERYNITQANVTQIVNALKKKGYLNVKRGR 60 Query: 61 RGG-VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P +++ I +++K E + +CF + + CP++ SC L ++ LNAF Sbjct: 61 YGGGFTLSDPPEEMRIGNIIKDIEPDLDLVQCFNNERNTCPVIDSCKLAGLMYSGLNAFL 120 Query: 120 DVLTQYSIECLV 131 + + + ++ ++ Sbjct: 121 EKMNEQTLADII 132 >gi|156932409|ref|YP_001436325.1| transcriptional repressor NsrR [Cronobacter sakazakii ATCC BAA-894] gi|156530663|gb|ABU75489.1| hypothetical protein ESA_00188 [Cronobacter sakazakii ATCC BAA-894] Length = 166 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TD+G+R L+Y A + IS++ E +S + KI+ L +AG V VRG Sbjct: 26 VQLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C ++ C + +C L VL A+ F Sbjct: 86 KNGGIRLGKPAATIRIGDVVREL-EPLSIVNCSSAF---CHITPACRLKQVLGDAVARFL 141 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV+ + K+ Sbjct: 142 QELDNYTLADLVQENQPLYKLL 163 >gi|304404495|ref|ZP_07386156.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304346302|gb|EFM12135.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 133 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 5/104 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y PNR + Q+AE +S +L KIL LVKAG+VE+ Sbjct: 1 MKYSKATNYALHTMLYLMAAT--PNRPIGVQQLAERQDVSSTYLSKILTKLVKAGMVESA 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 G GG RL R +QI+ LD++ A E + + +C H CP+ Sbjct: 59 SGANGGYRLKRDWEQISFLDIIHAIEGTASIFDCSFDHGPQCPI 102 >gi|332968974|gb|EGK08018.1| transcriptional repressor NsrR [Kingella kingae ATCC 23330] Length = 147 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT++TDY +RVL+Y AI++D I++IA+ IS+ L K++ LVK G + ++RG+ Sbjct: 1 MHLTQQTDYALRVLIYAAINDDGLVNIAEIAKVYNISKSHLMKVVTALVKGGFLYSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + +VV+ E + ECF +C + C L +L L F Sbjct: 61 GGGLRLGKPTAEINVGEVVRLM-EPLTIVECFGDRN-ECLISPHCRLAGILNSGLKVFLS 118 Query: 121 VLTQYSIECLVRNRS 135 L +Y++ L+ + + Sbjct: 119 HLDKYTLADLINSDT 133 >gi|218887677|ref|YP_002436998.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758631|gb|ACL09530.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 150 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+L+ A+H D P I IA+ IS +L K+++ L KAG + + G Sbjct: 1 MKLTTRSRYGTRMLLDIAMHGTDAPVSIRDIAKRQGISVKYLEKLIRVLRKAGYIRSTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +PA +I + DVV A EES C + CP + C ++ +A A + Sbjct: 61 AHGGYQLTQPASEIPVGDVVFALEESLAPYTCDEENPC-CPRMAVCLTRTIWDEASRAMY 119 Query: 120 DVLTQYSIECLVRNRS 135 L +++ L+R+ S Sbjct: 120 KKLNSFTLADLMRDAS 135 >gi|325123611|gb|ADY83134.1| hypothetical protein BDGL_002548 [Acinetobacter calcoaceticus PHEA-2] Length = 147 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL--VKAGIVETVR 58 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+R Sbjct: 1 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKHKQEWIITIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL A + +V+ + + EC + C L CGL +L +AL +F Sbjct: 61 GKGGGIRLNPEALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESF 117 Query: 119 FDVLTQYSI-ECLVRNRSS 136 + L QY++ E L +++S+ Sbjct: 118 YQSLDQYTLGEVLQQSKSA 136 >gi|46198394|ref|YP_004061.1| rrf2 family protein [Thermus thermophilus HB27] gi|55980424|ref|YP_143721.1| rrf2 family protein, transcriptional regulator [Thermus thermophilus HB8] gi|46196016|gb|AAS80434.1| rrf2 family protein [Thermus thermophilus HB27] gi|55771837|dbj|BAD70278.1| rrf2 family protein, transcriptional regulator [Thermus thermophilus HB8] Length = 149 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++AEA IS+ +L +I L AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRAPRAVPLKEVAEAQGISQHYLEQIAAQLRNAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL RP +++T L+VV+A E S C + C VG C + R+ A Sbjct: 61 KGGYRLARPPEKVTALEVVEALEGSLAPVSCLEDPE-SCDKVGRCSTELLWRRVDLAMRQ 119 Query: 121 VLTQYSIECLVRNR 134 VL +++ L+ R Sbjct: 120 VLGGTTLKDLIEER 133 >gi|78223138|ref|YP_384885.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194393|gb|ABB32160.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 135 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT++ +Y IR +++ A P + IS+IAEA + + FL KILQ K GIV++ Sbjct: 2 MELTRKGEYAIRGIIHLA--QLPPGKVALISEIAEATDVPQTFLAKILQSFAKIGIVQSF 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L R A +IT+ +VV+A E C C +CG+ V R+ Sbjct: 60 RGAGGGFMLGRSASRITLREVVEAVEGPILPNRCLIGSG-TCERDSTCGVHPVWRQVQQR 118 Query: 118 FFDVLTQYSIECLVRNR 134 +VL +IE L ++ Sbjct: 119 VVEVLDGVTIEDLATHK 135 >gi|146297253|ref|YP_001181024.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410829|gb|ABP67833.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 150 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+R + A+H D + IAE ISE +L +++ L KAG+V+++RG + Sbjct: 4 LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIATLKKAGLVKSIRGAQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +ITI ++++A E S AEC K+DCP C V K A Sbjct: 64 GGYMLSREPSKITIGEILRALEGSLSPAECIDDIEKVDCPRADFCVTKKVWEKVKKAIES 123 Query: 121 VLTQYSIECLVRN 133 V+ +++ LV + Sbjct: 124 VVDSITLQDLVDD 136 >gi|313905754|ref|ZP_07839113.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469360|gb|EFR64703.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 173 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R YG+R L+ A + D +Q IA+ ISE +L ++++ L K+G+V +VRG Sbjct: 1 MKLTTRGRYGLRALIDLAENQDGGAVSTQSIAQRQDISESYLEQLIRMLKKSGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG RL R AD+I++ DV+++ E S EC A DC C +T ++ K +N Sbjct: 61 AGGGYRLSRAADEISVGDVLRSLEGSLEAVECPAIVGDDCSSADEC-VTKIVWKRIN 116 >gi|318607414|emb|CBY28912.1| nitrite-sensitive transcriptional repressor NsrR [Yersinia enterocolitica subsp. palearctica Y11] Length = 125 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ISQ+ E +S + KI+ L + G+V VRG+ GG+RL +PADQI I DVV+ E Sbjct: 12 ISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPADQIRIGDVVRQLEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L VL +A+ +F + L Y++ +V++ + + K+ Sbjct: 72 LV-NCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVQDNTPLYKLL 122 >gi|254393536|ref|ZP_05008671.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|326439617|ref|ZP_08214351.1| rrf2 family protein, putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197707158|gb|EDY52970.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 150 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +R+ M A+H+D P + ++A A + K++ L G+VE RG Sbjct: 1 MRLTKGTDLALRIAMRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L +I +V+ E + V C CPL +C L SVLR A AF+ Sbjct: 61 RGGGLALTTAGRTGSIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFY 118 Query: 120 DVLTQYSIECLV 131 L Y+++ LV Sbjct: 119 TALDPYTVDDLV 130 >gi|87198175|ref|YP_495432.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133856|gb|ABD24598.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium aromaticivorans DSM 12444] Length = 167 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD G+R+L+ A + + AE +S + K+ Q LV G + RGR Sbjct: 19 MQLTQHTDLGLRLLIVLARKGAAVSLPAFSAEQG-LSYHHVAKVAQALVHEGFATSQRGR 77 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R A I + DVV+A E +A+C C L CGL+ VL +AL AF Sbjct: 78 SGGIALAREATNIRVGDVVRALERGMRLADCGG-----CALRADCGLSGVLAEALEAFMA 132 Query: 121 VLTQYSIECLVRN 133 VL +Y++ + R Sbjct: 133 VLDRYTLADVSRE 145 >gi|308070540|ref|YP_003872145.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305859819|gb|ADM71607.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 132 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + +LM A + P + Q+AE+ +S +L KIL LVKAG++E+V G Sbjct: 1 MKFTKATNYALHTMLMLVADSSVKPVGVQQLAESQNVSPTYLSKILTRLVKAGMIESVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG RL R D IT LD++ A E + + EC H +C Sbjct: 61 ANGGYRLSRHKDDITFLDIIHAIEGTNSLFECDFVHGSEC 100 >gi|77918038|ref|YP_355853.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77544121|gb|ABA87683.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 154 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC----ISELFLFKILQPLVKAGIVET 56 M +T+ T+Y IR +++ A P + + + C I+ FL KILQPL+K GIV + Sbjct: 1 MIITRATEYAIRAVLFMATQ---PRGETVLKKDICREQEITPAFLTKILQPLIKQGIVGS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG GG L + IT+LDV+KA E ++ C A + +C +C + V R+A Sbjct: 58 HRGIGGGFYLAKDPADITLLDVIKAEEGPIYLNLCLA-EETNCNREPTCPVNRVWREART 116 Query: 117 AFFDVLTQYSIECLVR 132 VL +YS L R Sbjct: 117 QLLAVLDRYSFADLCR 132 >gi|163740100|ref|ZP_02147503.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis BS107] gi|161386649|gb|EDQ11015.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis BS107] Length = 149 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R+L+ A + I ++ + + KI+ LV+ G V ++RGR Sbjct: 1 MKLNLKTDYALRLLILLATRPEQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV++ R +I + D+V A E + +C + C LVG+C L VL +A AF + Sbjct: 61 SGGVQIGRKPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115 Query: 121 VLTQYSIECLV 131 VL Y + L+ Sbjct: 116 VLMAYRLSDLI 126 >gi|33593212|ref|NP_880856.1| putative DNA-binding protein [Bordetella pertussis Tohama I] gi|33563587|emb|CAE42488.1| putative conserved DNA-binding protein [Bordetella pertussis Tohama I] gi|332382623|gb|AEE67470.1| putative DNA-binding protein [Bordetella pertussis CS] Length = 145 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TD+G+RV+MY D P I +IA IS L K++ L + G + R Sbjct: 1 MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + I ++V+ E+ + C + C L G+C L+ L ++L AF Sbjct: 61 GKGGGLRLARDAVEYRIGELVRVLEDQGALVNC---AQPPCVLNGACRLSGALAESLQAF 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 + L Y+++ LVR +++ Sbjct: 118 YRTLDGYTLDDLVRAPTAL 136 >gi|303249012|ref|ZP_07335257.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302489598|gb|EFL49538.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 145 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 2/128 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG+R+L+ A+H + P RI IA+ IS +L ++++ L KAG + + RG Sbjct: 1 MQLTTRSRYGLRMLLDIALHGGERPVRIQDIAKRRNISVKYLEQLIRALKKAGFINSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L P ++I + DVV+A E + EC + + C + G C + +A + F Sbjct: 61 PRGGHVLAMPPEEIRVGDVVRALESRPELTECVGNPET-CLIAGDCVTRRIWARATESLF 119 Query: 120 DVLTQYSI 127 L I Sbjct: 120 RELDAIRI 127 >gi|262045389|ref|ZP_06018413.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037307|gb|EEW38554.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 156 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG Sbjct: 16 VQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA QI + DVV+ E V C + C + +C L L +A +F Sbjct: 76 KNGGIRLGKPAGQIRVGDVVRDLEPLSLV-NCSSEF---CHITPACRLKQALAEAAQSFL 131 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y + LV + K+ Sbjct: 132 KELDNYMLADLVEKNQPLYKLL 153 >gi|78043306|ref|YP_359262.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995421|gb|ABB14320.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 142 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK+ +Y + LM A + + +AE + E FL KI+Q LVKAG+V TV+G Sbjct: 1 MQLTKQGEYALIALMDLAKLPKGQVVPVKTLAERLMLPEAFLAKIVQSLVKAGLVYTVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GGV L + ++IT+L+VV+A E +++C +H C V C L + K Sbjct: 61 PQGGVALLKDPEKITVLEVVEAVEGPIVLSQCI-NHPDICEKVEICPLHKIWHKVQQKLI 119 Query: 120 DVLTQYSIECLVRN 133 + + +++ L + Sbjct: 120 EEFSSHNLLTLSKE 133 >gi|261367832|ref|ZP_05980715.1| iron-sulfur cluster assembly transcription factor IscR [Subdoligranulum variabile DSM 15176] gi|282570636|gb|EFB76171.1| iron-sulfur cluster assembly transcription factor IscR [Subdoligranulum variabile DSM 15176] Length = 138 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 4/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R Y +R+++ A H D + +I++ IS +L +I+ PL KAG+V +VRG Sbjct: 1 MKFSTRDRYALRLMVELANHGDGLVPLKEISDTQQISLKYLEQIITPLAKAGLVTSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNA 117 +GG RL RP ++IT ++++A E C ++ ++CP C G L +N Sbjct: 61 QGGYRLARPEEEITAGEILRAVEGELTAIPCLGAN-MECPRRDQCQTIGFWCGLNDLINQ 119 Query: 118 FFDVLT 123 + D +T Sbjct: 120 YVDGVT 125 >gi|218531426|ref|YP_002422242.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Methylobacterium chloromethanicum CM4] gi|218523729|gb|ACK84314.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium chloromethanicum CM4] Length = 183 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 6/146 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +HL+ TDYG+R+LM+ + +A+ IS L KI Q LV+AG+VE +G Sbjct: 20 LHLSLHTDYGLRLLMHLTLAERGVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQG 79 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGVRL R A +I + +V E VA+C + CPL+G C L A AFF Sbjct: 80 RSGGVRLARDAREIRLGRLVADLEGVGTVADC---RRDPCPLLGRCRLKWAFDAAEQAFF 136 Query: 120 DVLTQYSIECLVRNRS--SIKKIFNA 143 L + ++ +V + +++ +F A Sbjct: 137 LELDRLTLADVVAGPTAAALRSLFRA 162 >gi|302871528|ref|YP_003840164.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor obsidiansis OB47] gi|302574387|gb|ADL42178.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor obsidiansis OB47] Length = 150 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+R + A+H D + IAE ISE +L +++ L KAG+V+++RG + Sbjct: 4 LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +ITI ++++A E S +EC K+DCP C V K A + Sbjct: 64 GGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIEN 123 Query: 121 VLTQYSIECLVRN 133 V+ +++ LV + Sbjct: 124 VVDSVTLQNLVDD 136 >gi|28899582|ref|NP_799187.1| transcriptional repressor NsrR [Vibrio parahaemolyticus RIMD 2210633] gi|153839631|ref|ZP_01992298.1| protein YjeB [Vibrio parahaemolyticus AQ3810] gi|260361405|ref|ZP_05774467.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus K5030] gi|260876677|ref|ZP_05889032.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AN-5034] gi|260896630|ref|ZP_05905126.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus Peru-466] gi|260900889|ref|ZP_05909284.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AQ4037] gi|731996|sp|P40610|NSRR_VIBPA RecName: Full=HTH-type transcriptional repressor nsrR gi|507739|gb|AAA62191.1| unnamed ORF; similar to ORF 3' of E.coli PurA and ORF 5' of Shigella flexneri VacB: Swiss-Prot Accession Number P21498 [Vibrio parahaemolyticus] gi|28807818|dbj|BAC61071.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149746852|gb|EDM57840.1| protein YjeB [Vibrio parahaemolyticus AQ3810] gi|308086327|gb|EFO36022.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus Peru-466] gi|308093960|gb|EFO43655.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AN-5034] gi|308106515|gb|EFO44055.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AQ4037] gi|308112892|gb|EFO50432.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus K5030] Length = 141 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E V C C + +C L L KA +AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVEF---CHITPACRLKDKLAKAKSAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L + +IE L+ + S + Sbjct: 117 AELDECTIESLLSDNSEL 134 >gi|33596274|ref|NP_883917.1| putative DNA-binding protein [Bordetella parapertussis 12822] gi|33602066|ref|NP_889626.1| putative DNA-binding protein [Bordetella bronchiseptica RB50] gi|33566043|emb|CAE36939.1| putative conserved DNA-binding protein [Bordetella parapertussis] gi|33576504|emb|CAE33582.1| putative conserved DNA-binding protein [Bordetella bronchiseptica RB50] Length = 156 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TD+G+RV+MY D P I +IA IS L K++ L + G + R Sbjct: 12 MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 71 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + I ++V+ E+ + C + C L G+C L+ L ++L AF Sbjct: 72 GKGGGLRLARDAVEYRIGELVRVLEDQGALVNC---AQPPCVLNGACRLSGALAESLQAF 128 Query: 119 FDVLTQYSIECLVRNRSSI 137 + L Y+++ LVR +++ Sbjct: 129 YRTLDGYTLDDLVRAPTAL 147 >gi|226322609|ref|ZP_03798127.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758] gi|225208946|gb|EEG91300.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758] Length = 147 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R + A + + P IS I+ ISE +L +++ L KAG+V+++RG Sbjct: 1 MKISTKGRYGLRAFIDLACYGAEEPVSISSISARQEISERYLEQLMAKLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG RL + A ++++ DV++A E A C A H D C + GSC V +K + Sbjct: 61 AGGGYRLAKDAAEVSVGDVLRALEGDLEPATCAALHSEDSCEIQGSCITKYVWKKVNESM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + I LV +KK Sbjct: 121 AQTVDSIMINTLVEMNKEVKK 141 >gi|92113358|ref|YP_573286.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796448|gb|ABE58587.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter salexigens DSM 3043] Length = 155 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY V+ A H + + +++A+A + + K L+ LVKAG++E+ RG Sbjct: 2 LKLSKLTDYAAVVMAQIARHPEQAHAATELADAVQLPHPTVSKTLKMLVKAGLLESRRGS 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRK---ALN 116 GG RL RPA IT D++ A E + EC SH DC L+ +CG+ ++ A+ Sbjct: 62 LGGYRLARPAAAITASDIIGAIEGPVAMTEC--SHADGDCDLLATCGVADNWQRVSLAIR 119 Query: 117 AFFDVLT 123 D +T Sbjct: 120 TLLDSVT 126 >gi|331002201|ref|ZP_08325720.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411295|gb|EGG90711.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon 107 str. F0167] Length = 154 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 82/139 (58%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R Y +++++ AI+++ P +I+Q++++ ISE +L +I+ L KA +V+++RG Sbjct: 1 MKISTRGRYALKMMVEFAINSNSPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L +P ++ T+ ++++ TE S +C + C C ++ +K +A + Sbjct: 61 QGGYLLVKPVEEYTVGEILRLTEGSLSPVDCLDGNG-SCVHSDFCVTQNLFKKVEDAINN 119 Query: 121 VLTQYSIECLVRNRSSIKK 139 V+ S++ LV + I+K Sbjct: 120 VVDNISLQDLVDDELDIRK 138 >gi|310643721|ref|YP_003948479.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309248671|gb|ADO58238.1| Putative transcriptional regulator [Paenibacillus polymyxa SC2] Length = 132 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + +LM + P + Q+AEA +S +L KIL LVKAG++E+V G Sbjct: 1 MKFTKATNYALHTMLMLVTDSSVKPIGVQQLAEAQQVSPTYLSKILTRLVKAGMIESVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG RL R D IT LD++ A E + + EC H +C Sbjct: 61 ANGGYRLSRNKDDITFLDIIHAIEGTNSLFECDFVHGSEC 100 >gi|312135466|ref|YP_004002804.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311775517|gb|ADQ05004.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor owensensis OL] Length = 150 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+R + A+H D + IAE ISE +L +++ L KAG+V+++RG + Sbjct: 4 LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +ITI ++++A E S +EC K+DCP C V K A + Sbjct: 64 GGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIEN 123 Query: 121 VLTQYSIECLVRN 133 V+ +++ LV + Sbjct: 124 VVDSVTLQDLVDD 136 >gi|220922121|ref|YP_002497422.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946727|gb|ACL57119.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium nodulans ORS 2060] Length = 153 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y + I+++A A ISE L K++ L + G+V T RGR Sbjct: 1 MRLTCFTDYALRTLIYLGTAEPRQSSIAEVARAYGISENHLVKVVHQLGRLGLVRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + A +I I +VV+ATEE + +CFA C + +C L +VL +AL AFF Sbjct: 61 GGGLRLGKAAAEIRIGEVVRATEEDLALVQCFAGGS--CAITPACRLRNVLGEALAAFFA 118 Query: 121 VLTQYSIECLVRNRSS 136 VL +Y++ L+ + Sbjct: 119 VLDRYTLADLLEPHAG 134 >gi|239908516|ref|YP_002955258.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239798383|dbj|BAH77372.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 148 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A+H + P RI IA +S +L K+++ L +AG V + RG Sbjct: 1 MKLTTRSRYGTRMILDMALHGQNGPVRIKDIAARQGVSVKYLEKLVRDLKEAGFVRSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L +P D I++ D+V+A E + EC CP C V +A A Sbjct: 61 PRGGHELDKPLDAISVGDIVRALEGDLSLVEC-GDETGPCPRQADCLTRGVWMEAARAMH 119 Query: 120 DVLTQYSIECLV 131 + L ++ LV Sbjct: 120 EKLDSITLADLV 131 >gi|152981815|ref|YP_001352304.1| transcriptional regulator [Janthinobacterium sp. Marseille] gi|151281892|gb|ABR90302.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 152 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +D G+RVLMY A + P+ ++++A + L K++ L K G ++ VRG Sbjct: 1 MKLTRFSDIGLRVLMYLARESRSPSVTVAEVALQFDVPHNHLVKVVGMLAKMGWIDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L D + I +++ E AE I C L G C L + L+ ++AF+ Sbjct: 61 RNGGISLAASPDTLHIGSILRVLEGD---AEAIDCEGIGCRLSGDCRLRNALKIGVDAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 + + +Y++ +V + Sbjct: 118 NAMDEYTLADIVSGNTG 134 >gi|239906274|ref|YP_002953014.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239796139|dbj|BAH75128.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 145 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG+R+L+ A+H D P RI IA+ IS +L ++++ L KAG + + RG Sbjct: 1 MQLTTRSRYGLRMLLDIALHGDEGPVRIQDIAKRRGISVKYLEQLIRALKKAGFINSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L PA+ I + DVV+A E + EC + ++ C + C + +A + F Sbjct: 61 PKGGHVLATPAEAIRVGDVVRALESRPELTECVGNPEV-CMISTDCVTRQIWARATESIF 119 Query: 120 DVLTQYSI-ECLVRNRSS 136 L + + LV+ R S Sbjct: 120 RELDAIHLSDLLVQARRS 137 >gi|330990683|ref|ZP_08314639.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329762123|gb|EGG78611.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 135 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT RTD RVL++ A H +R+ S I+E +S L K+++ L GI+ R Sbjct: 1 MRLTLRTDLAFRVLIHLARHARAQDRVTVSHISERHNLSHNHLVKVVKELCHHGILVGTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GR GG+RL R I I +V+ E E + C + C L SC L ++R+A +A Sbjct: 61 GRNGGIRLARHPKDINIGHIVRLMETEGEVMTGCAPLYGRPCVLADSCRLRHLIRQATDA 120 Query: 118 FFDVLTQYSIECLV 131 F +L S++ L+ Sbjct: 121 FMVILDGMSVQDLL 134 >gi|78355694|ref|YP_387143.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218099|gb|ABB37448.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 146 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R+ YG R+L+ A+H +D P I +IA+ IS +L K+++ L AG + + Sbjct: 1 MKLTTRSRYGTRMLLDIAMHTHGDDQPVSIKEIADRQGISMKYLEKLIRVLKGAGYISSR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L RP + I + DVV A EE+ EC CP + C ++ +A A Sbjct: 61 LGSKGGYMLARPPESILLGDVVFALEETVPTFECVDPEPC-CPRMDYCLTRTIWNEAAKA 119 Query: 118 FFDVLTQYSIECLVRN 133 ++ L +++ L+ + Sbjct: 120 MYEKLNSFTLADLIND 135 >gi|328472291|gb|EGF43161.1| transcriptional repressor NsrR [Vibrio parahaemolyticus 10329] Length = 141 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E V C C + +C L L KA AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVEF---CHITPACRLKDKLAKAKRAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L + +IE L+ + S + Sbjct: 117 AELDECTIESLLSDNSEL 134 >gi|187933794|ref|YP_001885366.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B] gi|188588800|ref|YP_001920513.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43] gi|251778728|ref|ZP_04821648.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187721947|gb|ACD23168.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B] gi|188499081|gb|ACD52217.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43] gi|243083043|gb|EES48933.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 147 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A + P I I++ +SE +L ++ PL KA I+ ++RG Sbjct: 1 MKLSTKGRYGVRAMVDLAFNYGGPPTSIKTISKRQNLSEYYLEQLFSPLRKANIIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG LC+P +IT+ D++ E +A+C ++C V SC + +K ++ Sbjct: 61 AQGGYVLCKPPSEITVGDIMHVLEGPVEIADCI--DGVECSNVDSCATKLLWQKIKDSID 118 Query: 120 DVLTQYSIECLVRN----RSSIK 138 DV+ +++ ++ + R+SI+ Sbjct: 119 DVMNSITLKDIIDDYEGARASIE 141 >gi|322437255|ref|YP_004219467.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] gi|321164982|gb|ADW70687.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] Length = 163 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 12/141 (8%) Query: 1 MHLTKRTDYGIRVLMYCA----------IHNDYPNRISQIAEACCISELFLFKILQPLVK 50 + LTK+ DYG+ L Y A HN Y IAEA I L KILQ L K Sbjct: 2 LRLTKKADYGLMALKYLAEQAAATSGNAAHN-YAQSAKDIAEAYHIPPQLLAKILQTLAK 60 Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110 G++ + G GG L R A +I+ +V++A + F+ C H C L C + Sbjct: 61 GGLLVSHAGTNGGYALARSAAEISAFEVIRAIDGPLFITSCITIHGT-CDLDSHCTIKEP 119 Query: 111 LRKALNAFFDVLTQYSIECLV 131 LRK ++ D+L+ I L+ Sbjct: 120 LRKVNDSIKDLLSAIRIADLI 140 >gi|254037192|ref|ZP_04871269.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 1_1_43] gi|226840298|gb|EEH72300.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 1_1_43] Length = 161 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 21 VQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A I I DVV+ E V C + C + +C L L KA+ +F Sbjct: 81 KNGGIRLGKSASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 136 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 137 TELDNYTLADLVEENQPLYKLL 158 >gi|190573183|ref|YP_001971028.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011105|emb|CAQ44714.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 151 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 RGG RL RPA +I++ +VV+A E + EC H C + CG S R Sbjct: 62 RGGYRLTRPAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWR 112 >gi|148555866|ref|YP_001263448.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501056|gb|ABQ69310.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 179 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 62/136 (45%), Gaps = 9/136 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H+T +YGI L++ D +AE IS FL KI L KAGIV G R Sbjct: 3 HITTSVEYGIHCLLWLVGSGDRAMSSRDLAELQGISPSFLAKIFPKLEKAGIVVASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RPAD I+ LD+V A E + +C FA G C + V+ Sbjct: 63 GGYRLARPADAISFLDIVDAIEGEKPLFDCQEVRERCALFAGGMPAWATDGVCAVHGVML 122 Query: 113 KALNAFFDVLTQYSIE 128 +A A D L S++ Sbjct: 123 QAEKAMRDALAAQSLQ 138 >gi|296135927|ref|YP_003643169.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] gi|295796049|gb|ADG30839.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] Length = 154 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD+G+R LM A + D ++A+ IS L K+LQ L G V+ RG Sbjct: 1 MKLTQFTDFGLRALMVLAENPDQSLNSKELAKILDISREHLVKVLQRLAAGGYVQNQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL + A +I + +VV+ E+ + EC C L C L +L A AF+ Sbjct: 61 NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120 Query: 121 VLTQYSI-ECL 130 L ++ +CL Sbjct: 121 RLNTSTLADCL 131 >gi|103486029|ref|YP_615590.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976106|gb|ABF52257.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis alaskensis RB2256] Length = 143 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +DY +R+LM A + + + +IA IS L K+ Q L G V RGR Sbjct: 1 MRLSLHSDYALRILMALAATGEQMS-VDEIASHYGISRNHLAKVAQRLQALGYVSAQRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R ++ VV+ E + EC CP+ G CGL L AL AF Sbjct: 60 GGGLTLARAPSEVIAGTVVREFENLGGLVECMDPATSTCPVRGGCGLQGALGGALAAFLA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L +Y++ L+ + + + A Sbjct: 120 HLDRYTLADLLPQPARFRALLGA 142 >gi|330992598|ref|ZP_08316546.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329760797|gb|EGG77293.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 145 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR L+Y + I +IA+ IS+ L K++ L G+V RGR Sbjct: 1 MRLTLHTDYSIRALIYLGQNPGRRVAIQEIADTHRISQNHLVKVINRLSTNGVVLARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGV L QI I DVV+ E + C C L +C L + K++NAF Sbjct: 61 NGGVELAHTPRQIVIGDVVRLMESDVSAIVSCIPGSGQQCILADACRLRKLFSKSMNAFM 120 Query: 120 DVLTQYSIECLV 131 VL + ++ ++ Sbjct: 121 AVLDRLTLHDML 132 >gi|111019257|ref|YP_702229.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110818787|gb|ABG94071.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 158 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RV+M A+ D S+ IAE +S K++ L + GIV+ RG Sbjct: 1 MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYAHAAKVITRLSELGIVDARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + ++ + + E V +C + CPL C L S LR+A NAFF Sbjct: 61 RAGGLAITELGRTASVGWLARRLEGDAEVVDCDGAQP--CPLRSGCLLRSALRRAQNAFF 118 Query: 120 DVLTQYSIECLVRN 133 + L +IE L R+ Sbjct: 119 ESLDALTIEDLTRS 132 >gi|254521010|ref|ZP_05133065.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14] gi|219718601|gb|EED37126.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14] Length = 151 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 RGG RL RPA +I++ +VV+A E + EC H C + CG S R Sbjct: 62 RGGYRLTRPALEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWR 112 >gi|19223865|gb|AAL86367.1|AF332574_4 putative RRF2 protein [Desulfovibrio gigas] Length = 150 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ YG R+++ A+H+ P RIS I++ +S +L K+++PL +AG +++ RG Sbjct: 1 MKLSTRSRYGTRMVLDIAMHSQAGPVRISDISKRQGVSVKYLEKLIRPLKQAGFIKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L ++I + VV+A E + EC + CP+ G C V +A A Sbjct: 61 PRGGHVLSDLPERIAVGAVVRAMEGEMALTECAKDASV-CPISGDCLTRKVWIEATRAML 119 Query: 120 DVLTQYSIECLVRN 133 D L + L+R Sbjct: 120 DRLDAITFLDLMRE 133 >gi|197116760|ref|YP_002137187.1| BadM/Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197086120|gb|ACH37391.1| transcriptional regulator, BadM/Rrf2 family [Geobacter bemidjiensis Bem] Length = 152 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116 +GG L + ++IT+ V++ATE + +C + K +C GSC +V ++ LN Sbjct: 61 PQGGYCLAKSPEEITVRAVIEATEGDTLIVDCASRKKGECNFDGSCVTQTVWEESNNRLN 120 Query: 117 AFFDVLT 123 FF+ +T Sbjct: 121 EFFESIT 127 >gi|294340149|emb|CAZ88521.1| putative Transcriptional regulator [Thiomonas sp. 3As] Length = 154 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD+G+R LM A + D ++A IS L K+LQ L G V+ RG Sbjct: 1 MKLTQFTDFGLRALMVLAENPDQSLNSKELARILDISREHLIKVLQRLAAGGYVQNQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL + A +I + +VV+ E+ + EC C L C L +L A AF+ Sbjct: 61 NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120 Query: 121 VLTQYSI-ECL 130 L ++ +CL Sbjct: 121 RLNTSTLADCL 131 >gi|317049750|ref|YP_004117398.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b] gi|316951367|gb|ADU70842.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] Length = 147 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ + +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDYGLRALIYMATLPEGTQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL ++I I DVV+ E V C +C + +C L L A+ F Sbjct: 61 KNGGIRLGMDPEKIVIGDVVRKMEPLQLV-NCN-----ECSITPACRLRKALNDAVQLFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV+ S+ +I Sbjct: 115 RELDNYTLADLVKGNDSLYQIL 136 >gi|188026362|ref|ZP_02961812.2| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827] gi|188020109|gb|EDU58149.1| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827] Length = 165 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + I+++ E +S + KI+ L G V+ RG Sbjct: 26 VQLTSFTDYGLRALIYLASLPEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYVKATRG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA+ I + DVV+A E V C C + +C L VL +A+ F Sbjct: 86 KNGGITLGQPAETIRVGDVVRALEPLTLV-NCSGEF---CHITPACRLKGVLHQAIQQFL 141 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L ++++ +V++ S + ++ Sbjct: 142 KELDKHTLADMVKDNSPLYQLL 163 >gi|159044849|ref|YP_001533643.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912609|gb|ABV94042.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 139 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 68/127 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R+LM A + + +AE +S L KI+Q L +AGIVET RG Sbjct: 1 MRLTSFTDYGLRMLMRMASAPERAFSTADLAEEFDLSRHHLSKIMQRLSRAGIVETRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +PA ++ + V+ E+ + ECF S C + CGL + LR A AF Sbjct: 61 GGGATLAQPASELRLGRVIAVLEQDQPIVECFGSGPHSCTIDRQCGLKARLRAAERAFLT 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 DLDRSTL 127 >gi|162454034|ref|YP_001616401.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56'] gi|161164616|emb|CAN95921.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56'] Length = 232 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ + YG+R L A HND P +I +I+E I FL +I Q L KAG++ + RG Sbjct: 82 VKLSNKGRYGVRALFDIAFHNDGRPTQIREISERELIPARFLEQIFQDLKKAGLISSKRG 141 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 RGG L RPA +I++ DVV+A E Sbjct: 142 PRGGYHLARPASEISLGDVVRALE 165 >gi|239626143|ref|ZP_04669174.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520373|gb|EEQ60239.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 144 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ AIH D P +I IA IS +L +I+ L +AG V ++RG Sbjct: 1 MLVSTKGRYALRTMVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGYVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L +PA + T+ +++ TE S +C + + C C + R+ A Sbjct: 61 NQGGYYLAKPAAEYTVGMILRVTEGSLAPVDCLSGGENPCTRQMDCVTLRLWRELDEAIS 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 V+ +Y++E LV+ R ++K + Sbjct: 121 GVVDRYTLEDLVQWRRNMKDNY 142 >gi|299139059|ref|ZP_07032235.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX8] gi|298598739|gb|EFI54901.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX8] Length = 152 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LTK+ DYG+ L Y A + + IAEA I L KILQ L K+G++ + G Sbjct: 2 LRLTKKADYGLMALKYLAEQSTNGAQSAKDIAEAYHIPPQLLAKILQTLAKSGLLVSHAG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I+ +V++A + F+ C H C L G+C + LRK ++ Sbjct: 62 TNGGYALARSAHDISAFEVIRAIDGPLFITSCITIHGT-CDLHGTCTIKEPLRKVNDSIK 120 Query: 120 DVLTQYSIECLVR 132 ++L+ + L+ Sbjct: 121 ELLSGIRVSDLIE 133 >gi|312793908|ref|YP_004026831.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877395|ref|ZP_07737360.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|311795869|gb|EFR12233.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|312181048|gb|ADQ41218.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 150 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+R + A+H D + IAE ISE +L +++ L KAG+V+++RG + Sbjct: 4 LSTKGRYGVRAMFDLALHYDEGLVSLKNIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +ITI ++++A E S +EC ++DCP C V K A + Sbjct: 64 GGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIEN 123 Query: 121 VLTQYSIECLVRN 133 V+ +++ LV + Sbjct: 124 VVDSVTLQDLVDD 136 >gi|220931730|ref|YP_002508638.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii H 168] gi|219993040|gb|ACL69643.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii H 168] Length = 151 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 13/146 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ R YG+R ++ AIH D P R +IAE ISE +L ++ L KAG+V++V Sbjct: 1 MKISTRGRYGLRAMVDLAIHQDSGAIPLR--EIAERQQISEQYLEQLFANLRKAGLVKSV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSC---GLTSVLRK 113 RG GG L R AD+IT DV++ E +C + D C L+ C L L+K Sbjct: 59 RGAHGGYLLNRDADEITAGDVLRTLEGPIAPTDCVLDNDEDVCSLIDKCVTHELWVKLQK 118 Query: 114 ALNAFFDVLT----QYSIECLVRNRS 135 ++ D +T Q + L+RN++ Sbjct: 119 QVSEILDSVTLRDLQERAKELIRNKN 144 >gi|210622565|ref|ZP_03293247.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275] gi|210154148|gb|EEA85154.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275] Length = 155 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+ + + P I I+E +SE +L +I L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLKAMFELALNYGEEPISIKYISEKQNVSERYLEQIFSKLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R D+I++ D++ E +++C + C C V +K NA Sbjct: 61 SQGGYFLARKPDEISVGDILTVLEGPITISDCLKEEGV-CSNSDKCATRLVWKKMKNAID 119 Query: 120 DVLTQYSIECLVRNR 134 DV+ ++ +V +R Sbjct: 120 DVVNTTFLQDMVDDR 134 >gi|312127257|ref|YP_003992131.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777276|gb|ADQ06762.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor hydrothermalis 108] Length = 150 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+R + A+H D + IAE ISE +L +++ L KAG+V+++RG + Sbjct: 4 LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +ITI ++++A E S +EC ++DCP C V K A + Sbjct: 64 GGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIEN 123 Query: 121 VLTQYSIECLVRN 133 V+ +++ LV + Sbjct: 124 VVDSVTLQDLVDD 136 >gi|302344575|ref|YP_003809104.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641188|gb|ADK86510.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii DSM 2075] Length = 151 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R ++ A+HND P + +A IS +L ++L PL AG+V++VRG Sbjct: 1 MKLSTRGRYGVRAMLELAMHNDDGPVPLRNLALRQEISAKYLEQLLIPLKGAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L I++ D+V++ E EC + C VG C + V + Sbjct: 61 ARGGYQLAADPKDISLYDIVRSLEGPLAPVECVQDAEY-CQRVGGCTVHLVWGEMGQLLV 119 Query: 120 DVLTQYSI-ECLVRNRS 135 D L++ S+ + +VR R Sbjct: 120 DFLSKMSLADMVVRQRE 136 >gi|255319821|ref|ZP_05361026.1| HTH-type transcriptional regulator NsrR [Acinetobacter radioresistens SK82] gi|262380353|ref|ZP_06073507.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255303140|gb|EET82352.1| HTH-type transcriptional regulator NsrR [Acinetobacter radioresistens SK82] gi|262297799|gb|EEY85714.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 149 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R LMY + + P I++IA IS L KI+ + K G + T+RG+ Sbjct: 1 MQLNKFTDYALRSLMYISRPRNTPYTIAEIAVDLQISHNHLVKIVHFMGKQGWLITLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L A + D+V+ + + EC + C L CGL +L A+ F+ Sbjct: 61 GGGIQLNPQALDSRVGDIVRILQGDQPIVECNSP---PCVLRSDCGLKGILDTAVEQFYQ 117 Query: 121 VLTQYSI 127 L QY++ Sbjct: 118 SLNQYTL 124 >gi|296392911|ref|YP_003657795.1| BadM/Rrf2 family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180058|gb|ADG96964.1| transcriptional regulator, BadM/Rrf2 family [Segniliparus rotundus DSM 44985] Length = 151 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD G+RV M A + + +AE + K++ L G+VE+ RG Sbjct: 1 MQLTKFTDLGLRVTMLLAAAPSGRQLSTAHVAEQMRVPYTHAAKVVARLAGLGVVESARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL A +I + + E V EC ++ CPL C L LR+A AFF Sbjct: 61 RAGGLRLAESASSRSIGWIARRLEGDGEVVECEGAN--PCPLREGCRLRGALRQAQEAFF 118 Query: 120 DVLTQYSIECLVRN 133 VL +++ ++R Sbjct: 119 HVLDGWTVAEMIRT 132 >gi|291562648|emb|CBL41464.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SS3/4] Length = 143 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RVL+ A H D + A ISE +L I++ LVKA ++E VRG Sbjct: 1 MMVSTKGRYALRVLIDLAEHQTDGYIPLKDTAARQEISEKYLEGIIKILVKAKLLEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116 + GG RL + +Q T+ +++ TE S C DCP +GSC L L K +N Sbjct: 61 KGGGYRLTKAPEQYTVGSILRLTENSMAPVACLEPGSTDCPRMGSCKTLPLWQGLDKVVN 120 Query: 117 AFFDVLTQYSIECLVRN 133 + D +T I LV+N Sbjct: 121 EYLDGVT---IADLVQN 134 >gi|291295978|ref|YP_003507376.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470937|gb|ADD28356.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM 1279] Length = 159 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + +AEA IS +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRQPQAVPLKDVAEAQGISLHYLEQIAAQLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP++ I L+VV+A E S C ++ C G C ++ ++ A Sbjct: 61 RGGYRLGRPSEHIDALEVVEALEGSLAPVICLDDPEL-CWQTGHCSTETLWKRVDEAMRG 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R I+ Sbjct: 120 VLRSTTLKDLIEERRLIE 137 >gi|124268159|ref|YP_001022163.1| BadM/Rrf2 family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260934|gb|ABM95928.1| transcriptional regulator, BadM/Rrf2 family [Methylibium petroleiphilum PM1] Length = 184 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YG+ L++ + +AE IS F+ KI L KAGIV G R Sbjct: 3 HLTSSVEYGLHCLLWLVDAGETQPSSRDLAELQGISPSFVAKIFPKLEKAGIVAASAGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RPA++IT+LDVV A E + +C F G C + +V+ Sbjct: 63 GGYRLARPAERITVLDVVDAIEGDKPLFDCQEIRGRCAVFEGEAPRWATGGVCAIHAVML 122 Query: 113 KALNAFFDVLTQYSIECLV 131 +A + D L Q ++ L Sbjct: 123 RAEKSMRDALAQETLAGLA 141 >gi|297624030|ref|YP_003705464.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165210|gb|ADI14921.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix DSM 17093] Length = 149 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R YG+R L+ A+ + + + ++E IS+ +L +I+ L +AGIVE+VRG Sbjct: 1 MWISTRAQYGMRALVEIALSGETTS-LKVVSERQGISQHYLEQIVAVLRRAGIVESVRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R+ RP ++T L+VV+ E S C C G+C S+ + A + Sbjct: 60 YGGYRMARPMHEVTALEVVELMEGSLAPVACIEDEAC-CEYTGNCSTQSLWERVDRAVRE 118 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +I LV R ++ Sbjct: 119 VLGSTTIGDLVAERQLLQ 136 >gi|329297952|ref|ZP_08255288.1| transcriptional repressor NsrR [Plautia stali symbiont] Length = 147 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + I+++ + +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDFGLRALIYMATLPQGQQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL ++I I DVV+ E V C +C + +C L S L A+ F Sbjct: 61 KNGGIRLGMDPEKIVIGDVVRKMEPLQLV-NCK-----ECAINPACRLRSALNNAVQLFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 +Y++ LV+N S+ I Sbjct: 115 QEQDKYTLADLVQNNDSLYHIL 136 >gi|322417974|ref|YP_004197197.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320124361|gb|ADW11921.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 152 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116 +GG L + + IT+ V++ATE + +C K +C GSC +V ++ LN Sbjct: 61 PQGGYCLAKSPEDITVRAVIEATEGDTLIVDCSGRRKGECGFDGSCVTQTVWEESNSRLN 120 Query: 117 AFFDVLT 123 FF+ +T Sbjct: 121 EFFESIT 127 >gi|315649593|ref|ZP_07902678.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453] gi|315275066|gb|EFU38441.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453] Length = 133 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K TDY + +++ A P + Q+AE +S +L KIL LVKAG++E++ G Sbjct: 1 MKYSKATDYALHTMLFLTAATPQKPIGVQQLAERQSVSPTYLSKILTKLVKAGMIESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 GG RL R + I+ LD++ A E S + +C H CP+ Sbjct: 61 VNGGYRLKRNWEDISFLDIIHAIEGSASLFDCSFDHGPGCPI 102 >gi|270264632|ref|ZP_06192897.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041315|gb|EFA14414.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 179 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T +YGI L++ N ++AE +S FL KI L KAGIV G R Sbjct: 3 YITTSVEYGIHCLLWLVGDNQRALSSRELAELQGVSPSFLAKIFPKLEKAGIVAASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RPAD+I+ L+++ A E + +C F + D + G C + +V+ Sbjct: 63 GGYRLARPADEISFLEIIDAIEGHKPLFDCQEVRGRCAVFDNSPPDWAVSGKCAIHAVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A A D L ++ Sbjct: 123 QAEKAMRDALAAQTL 137 >gi|302522427|ref|ZP_07274769.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. SPB78] gi|302431322|gb|EFL03138.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. SPB78] Length = 151 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A H ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I++LDVV+A + A ++ P + GL ++ R D Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGRLAYPGP-AAGLPALWRTLEERARD 119 Query: 121 VLTQYSIECLVRNRSSIK 138 +L + S+ L R + + Sbjct: 120 LLGEVSLASLAREAPTTR 137 >gi|182677317|ref|YP_001831463.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633200|gb|ACB93974.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 180 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YGI L++ D I ++AE IS FL KI L KAGIV G R Sbjct: 3 HLTISVEYGIHCLLWLVGSGDTAMSIRELAELQGISPSFLAKIFPKLEKAGIVAASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL R ++I+ LD+V A E + +C FA + + G C + V+ Sbjct: 63 GGYRLGRSPEEISFLDIVDAIEGHKPLFDCQEVRERCALFAGKPPEWAMKGVCAIHGVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A A D L ++ Sbjct: 123 QAEKAMRDSLASQTL 137 >gi|118590662|ref|ZP_01548063.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614] gi|118436638|gb|EAV43278.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614] Length = 143 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +D+ +R+LM +D P + ++++ +++ + KI+ L K G +ET RGR Sbjct: 1 MRLSQASDFALRILMATG-QSDDPQTVDKLSKQLGLAKSHVMKIVAHLAKGGYLETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I + DVV+ E V C C + C L + +A AF Sbjct: 60 GGGIRLAKAPATIRLGDVVRLIEPDLGVVACLKPEPTVCAFLPRCALKGAMAQASEAFLA 119 Query: 121 VLTQYSIECLV 131 L ++ ++ Sbjct: 120 SLNTETLASIL 130 >gi|15838078|ref|NP_298766.1| hypothetical protein XF1477 [Xylella fastidiosa 9a5c] gi|9106501|gb|AAF84286.1|AE003977_9 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 153 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A H +++AE + + KIL+PL +AG+VE RG Sbjct: 2 LRVTKLTDYASVVLTVLAAHPGAVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 GG RL P +IT++ +V+A E + EC H C + CG+ S Sbjct: 62 YGGYRLAHPPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRS 109 >gi|315651843|ref|ZP_07904846.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium saburreum DSM 3986] gi|315485845|gb|EFU76224.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium saburreum DSM 3986] Length = 146 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 82/139 (58%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R Y +++++ AI+ + P +I+Q++++ ISE +L +I+ L KA +V+++RG Sbjct: 1 MKISTRGRYALKMMVEFAINMETPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L +P ++ T+ ++++ TE S +C + +C C ++ +K +A + Sbjct: 61 QGGYLLVKPVEEYTVGEILRLTEGSLAPVDCLDGNG-NCVHSDFCVTQNLFKKVEDAINN 119 Query: 121 VLTQYSIECLVRNRSSIKK 139 V+ S++ LV + I++ Sbjct: 120 VVDNISLKDLVTDELDIRR 138 >gi|312880924|ref|ZP_07740724.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] gi|310784215|gb|EFQ24613.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] Length = 164 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A + P RI +AEA I FL IL L G VE+ RG Sbjct: 1 MAITQKCQYALRALFELACREGEGPVRIGTVAEAQNIPPRFLEGILNTLKAGGFVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG RL RPA I++ DV++ + S +C S + C L G C + +A A Sbjct: 61 KEGGYRLLRPARDISVGDVIRYLQGSLSQVDCDPGSSREPCGLYGDCVFRPLWERAQKAL 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V +I+ V ++ ++ Sbjct: 121 ESVYDSTTIQDFVDRQAERER 141 >gi|318059253|ref|ZP_07977976.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces sp. SA3_actG] gi|318075281|ref|ZP_07982613.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces sp. SA3_actF] Length = 151 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A H ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I++LDVV+A + A + P + GL ++ R D Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYPGP-AAGLPALWRTLEERARD 119 Query: 121 VLTQYSIECLVRNRSSIK 138 +L + S+ L R +++ Sbjct: 120 LLGEVSLASLAREAPTMR 137 >gi|172057245|ref|YP_001813705.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989766|gb|ACB60688.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 131 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 10/135 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57 M +T+ TDY IRVL+Y ++ PNR+ QI E IS+ L KI+ L K G++ + Sbjct: 1 MKMTRSTDYAIRVLLYATLN---PNRLVQIQEVADHYAISKNHLMKIVHALSKFGLITSY 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +GR GG +L + ++IT+ VV EE ++ E +++ + +A Sbjct: 58 QGRNGGFKLAKAPNEITLGQVVALFEEVSYLKEVLPTNEKET----LKNTRQAFDEAFLL 113 Query: 118 FFDVLTQYSIECLVR 132 F + L Y++E L + Sbjct: 114 FANALQAYTLEDLTK 128 >gi|256830950|ref|YP_003159678.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256580126|gb|ACU91262.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium baculatum DSM 4028] Length = 153 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 74/132 (56%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ Y R+L+ A+HN+ P+R++ I+E I+ F+ +I++PL AG+V + RG Sbjct: 1 MKLSAKSRYASRILLDLALHNEGVPHRVNDISERTGITVPFIEQIIKPLKHAGMVTSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + IT+ D+V+ E S ++ C ++ ++ C C + ++A +A Sbjct: 61 AAGGHQLGRSPENITLGDIVRIMEGSVELSACLSAPEL-CERTAVCPTRAAWQRATDAML 119 Query: 120 DVLTQYSIECLV 131 L ++ L Sbjct: 120 RELDTITLAGLA 131 >gi|262393041|ref|YP_003284895.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25] gi|269967699|ref|ZP_06181748.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B] gi|262336635|gb|ACY50430.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25] gi|269827677|gb|EEZ81962.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B] Length = 141 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L++ A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIFLASLPEDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E V C C + +C L L KA +AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVDF---CHITPACRLKDKLAKAKSAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L +IE L+ + S + Sbjct: 117 AELDDCTIESLLSDNSEL 134 >gi|303245724|ref|ZP_07332007.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302492987|gb|EFL52852.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 147 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A+H D P RI +A +S +L K+++ L +AG V + RG Sbjct: 1 MKLTTRSRYGTRMILDMALHAVDGPVRIKDVAARQGVSIKYLEKLVRELKQAGFVRSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118 RGG L +P +IT+ +V+A E + EC CP + C V +A A Sbjct: 61 PRGGHELAKPLSEITVGAIVRALEGDISLVECDGEGSGQSCPRLADCLTREVWAEAARAM 120 Query: 119 FDVLTQYSIECLV 131 + L ++ LV Sbjct: 121 HERLDAITLADLV 133 >gi|83590489|ref|YP_430498.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573403|gb|ABC19955.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica ATCC 39073] Length = 150 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R +YG+R + A H + P I +AE ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTRGEYGLRAMFDLAQHYGEGPIPIKSVAERQDISEHYLEQLIAVLRKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R ++IT+ D+++ E EC + + + C +C + K ++ Sbjct: 61 AQGGYVLSREPEEITVGDIIRVLEGPIAPVECLNTAEGESCERAETCVTRGIWEKVRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 DVL +++ +V + +++ Sbjct: 121 SDVLDSFTLADMVAKANQMRQ 141 >gi|189424306|ref|YP_001951483.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter lovleyi SZ] gi|189420565|gb|ACD94963.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ] Length = 134 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57 M LT++ DY IR ++Y A + PN+IS +IA A + + FL KI Q K GIV++ Sbjct: 2 MELTRKGDYAIRGIIYLA--SQPPNKISLLSEIAVAVDVPQTFLAKIFQQFSKTGIVKSF 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L P + IT+L VV+A E C +C SC + V R+ Sbjct: 60 RGTGGGFLLAGPPESITLLQVVEAVEGPILPNRCVLKPG-ECERDASCTVHPVWRQVQQQ 118 Query: 118 FFDVLTQYSIECL 130 +L +++ L Sbjct: 119 VRSILAGITLKDL 131 >gi|91227445|ref|ZP_01261809.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01] gi|91188595|gb|EAS74886.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01] Length = 141 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L++ A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIFLASLPEDELTSITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E V C C + +C L L KA +AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVDF---CHITPACRLKDKLAKAKSAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L +IE L+ + S + Sbjct: 117 AELDDCTIESLLSDNSEL 134 >gi|118581140|ref|YP_902390.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503850|gb|ABL00333.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus DSM 2379] Length = 158 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ YG+R L A + P +I I+ IS +L +I Q L +AGI+++ RG Sbjct: 1 MRLTTKSRYGLRALFDIAYNCGTAPAQIQDISRRQDISPRYLEQIFQNLKRAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRK 113 +GG L R D+ITIL+++ ATE+ + EC + + +C GSC +V + Sbjct: 61 PQGGYFLARSPDKITILEILNATEQDVLLVECAGATEKKSKRTGECAQEGSCVTQTVWEE 120 Query: 114 ALNAFFDVLTQYSIECL 130 A ++ + +++ L Sbjct: 121 ASALLGELFSGITLQTL 137 >gi|295695737|ref|YP_003588975.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] gi|295411339|gb|ADG05831.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] Length = 136 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 9/142 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YGI +++ AI++ D P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKLSTRGRYGITLMVDLAINSGDQPVSLKSIAERQNLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +PA +IT D+V+ E V E D P G L +R A+NA Sbjct: 61 AYGGYVLAKPAQEITAGDIVRVLEGPITVVE-------DEP-TGLRRLWDEVRDAINAVL 112 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D T + ++R + +F Sbjct: 113 DRTTLADLAEMMRQGTDDGLMF 134 >gi|307941725|ref|ZP_07657080.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4] gi|307775333|gb|EFO34539.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4] Length = 138 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +D+ +R+L+Y P + ++ +S+ L K++ L + +VET RGR Sbjct: 1 MRLSQASDFALRILIYLG-QTREPQTVDKLTSRLRLSKSHLMKLVAQLARLDLVETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + I I DVV++ E V C +C + C L + A +AF D Sbjct: 60 GGGILLKANPETIRIGDVVRSFETDLGVVACLKQEPTECVFLPRCALKQTMAGAADAFLD 119 Query: 121 VLTQYSI 127 L Q ++ Sbjct: 120 YLNQKTL 126 >gi|158522270|ref|YP_001530140.1| BadM/Rrf2 family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511096|gb|ABW68063.1| transcriptional regulator, BadM/Rrf2 family [Desulfococcus oleovorans Hxd3] Length = 154 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ YG R+++ A++ + P R+S++++ IS +L K+++ + +AG+VE+ RG Sbjct: 1 MRLTTKSRYGTRLILDLALYGKEEPVRLSEVSKRQGISLKYLEKLIRRMRRAGLVESSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117 GG +L + + I++ D+V+ E + +C + C G C + + A Sbjct: 61 PYGGYKLAKAPEDISVGDIVRVMEGGTSITDCSERESVCGVCNRAGECLSRHIWVETSKA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 F+ L ++ I L+ N ++I K Sbjct: 121 MFNALDEFRIGDLIENSTTILK 142 >gi|114798504|ref|YP_760252.1| putative transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114738678|gb|ABI76803.1| putative transcriptional regulator [Hyphomonas neptunium ATCC 15444] Length = 136 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 69/127 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R+LM A D +++AE +S L KI+Q L AG+++T RG Sbjct: 1 MRLTAFTDYGLRMLMRMASAPDRAFSTAELAEEFGLSRNHLAKIMQRLAGAGLIQTRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I + +++ EE + EC ++ C L C L + L+ A AF Sbjct: 61 GGGAELGRPANEIRLGAIIRLLEEGQPLVECLSADGGACTLTPRCRLKARLQSAEMAFLS 120 Query: 121 VLTQYSI 127 L Q ++ Sbjct: 121 ELDQSTL 127 >gi|125974348|ref|YP_001038258.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005573|ref|ZP_05430533.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281418895|ref|ZP_06249913.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|125714573|gb|ABN53065.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|255990481|gb|EEU00603.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281407352|gb|EFB37612.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|316941506|gb|ADU75540.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 153 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ ++ AIH+ R+S IAE C +SE ++ +I L +AGIVE++R Sbjct: 1 MKISTKGRYGLEAIVDLAIHSS-EGRVSLKSIAERCGMSEAYILQIFLILRRAGIVESIR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKA 114 G +GG L R QIT+ +++ E C A K C +C S K Sbjct: 60 GAQGGYVLARDPSQITVGEILTVLEGPLAPVPCIAEKTKRSKSSCERYENCTARSFWEKI 119 Query: 115 LNAFFDVLTQYSIECLVR 132 +N DV ++E LV+ Sbjct: 120 MNTLNDVANSITVEDLVK 137 >gi|238757525|ref|ZP_04618710.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC 35236] gi|238704287|gb|EEP96819.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC 35236] Length = 125 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ISQ+ + +S + KI+ L + G+V VRG+ GG+RL +PA QI I DVV+ E Sbjct: 12 ISQVTDVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPAAQIRIGDVVRELEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L VL +A+ +F + L Y++ +V++ S + K+ Sbjct: 72 LV-NCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVKDNSPLYKLL 122 >gi|222529700|ref|YP_002573582.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312622077|ref|YP_004023690.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|222456547|gb|ACM60809.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor bescii DSM 6725] gi|312202544|gb|ADQ45871.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor kronotskyensis 2002] Length = 150 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+R + A+H D + IAE ISE +L +++ L KAG+V+++RG + Sbjct: 4 LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +ITI ++++A E S +EC ++DCP C V K A Sbjct: 64 GGYMLSRDPSKITIGEILRALEGSLSPSECIDDLDRVDCPRAEFCVTRKVWEKVKEAIEK 123 Query: 121 VLTQYSIECLVRN 133 V+ +++ LV + Sbjct: 124 VVDSVTLQDLVDD 136 >gi|187736491|ref|YP_001878603.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia muciniphila ATCC BAA-835] gi|187426543|gb|ACD05822.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia muciniphila ATCC BAA-835] Length = 147 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A H D + +I+ ++ +L +I+ L+KAG V++ RG Sbjct: 2 MKVSTRGRYALRLMIDLAQHRDEGYISLKEISARQDVTVRYLEQIIAILLKAGFVQSFRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R + T D++K TE S C ASH+ CP C R Sbjct: 62 KAGGYRLSRHPREYTTEDILKLTEGSLLPLSCTASHENPCPRAAGCATLPFWRGLQQVIE 121 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 + L + ++E L + I + AG Sbjct: 122 NYLRRVTLEDLAEQQKEIGCDYGAG 146 >gi|302391513|ref|YP_003827333.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203590|gb|ADL12268.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium arabaticum DSM 5501] Length = 153 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG+R ++ A+H D ++ IAE ISE +L +++ L KAG+V +VR Sbjct: 1 MKLSTKGRYGVRAMVDLALHYDDQGATPLNSIAERQNISEHYLEQLIATLRKAGLVNSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNA 117 G GG L R +IT+ D+++ E +EC A + C + SC + +K N+ Sbjct: 61 GAYGGYLLARKPAEITVKDIIQELEGPIAPSECVAKESESSCENIESCITRLIWKKLRNS 120 Query: 118 FFDVLTQYSIECL 130 +VL ++E L Sbjct: 121 INEVLNSITLEDL 133 >gi|237728822|ref|ZP_04559303.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226909444|gb|EEH95362.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 167 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 13/138 (9%) Query: 8 DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +YGI LM C + + R + +IAE + +L KI L KAG+V ++ G+ GG Sbjct: 9 EYGIHSLM-CMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115 +L +PA+ IT+LDVV A + + EC F H + G CG+ SV+ A Sbjct: 68 QLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFEEHPPEWACEGICGVRSVMDMAQ 127 Query: 116 NAFFDVLTQYSIECLVRN 133 + L Q++I L R Sbjct: 128 QRMEEALGQHTILDLARK 145 >gi|167627991|ref|YP_001678491.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597992|gb|ABZ87990.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 136 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A +N P ++IAE ++ + K+L L + IV + RG Sbjct: 2 LKISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L IT+LDVVKA E+ + EC HK C L GSC ++S + + D Sbjct: 62 EGGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSSYWKVLNSQLLD 119 Query: 121 VLTQYSIECLVRNR 134 +L++ SI +V N+ Sbjct: 120 LLSKTSIYDIVNNK 133 >gi|241668545|ref|ZP_04756123.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877080|ref|ZP_05249790.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843101|gb|EET21515.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 136 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A +N P ++IAE ++ + K+L L + IV + RG Sbjct: 2 LKISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L IT+LDVVKA E+ + EC HK C L GSC +++ R + D Sbjct: 62 EGGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSNYWRVLNSQLLD 119 Query: 121 VLTQYSIECLVRNR 134 +L++ SI +V N+ Sbjct: 120 LLSKTSIYDIVNNK 133 >gi|291531113|emb|CBK96698.1| rrf2 family protein (putative transcriptional regulator) [Eubacterium siraeum 70/3] Length = 135 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T TDY IR++ + A ND I+E + + F KIL+ L AGIV + +G Sbjct: 1 MHITLETDYAIRIVDFMA-KNDGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG L R ++++ DVV+A E+++ + C H Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEDTYMFSRCLDGH 94 >gi|333023880|ref|ZP_08451944.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332743732|gb|EGJ74173.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 151 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L A H ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALAELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I++LDVV+A + A + P + GL ++ R D Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYPGP-AAGLPALWRTLEERARD 119 Query: 121 VLTQYSIECLVRNRSSIK 138 +L + S+ L R + + Sbjct: 120 LLGEVSLAALAREAPTTR 137 >gi|298243979|ref|ZP_06967786.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297557033|gb|EFH90897.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 145 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + DYG+R ++ A + P S IA I E +L +IL L K G+V++VRG Sbjct: 1 MKLTMKGDYGLRAMLDMAAYYGQGPIESSDIASRQYIPEQYLDQILMVLRKEGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + QIT+ V++A E EC + C L C L V +K A Sbjct: 61 PKGGHMLAKAPGQITMAQVMQALEGYVPPMECLPNPDF-CKLSPGCALREVWQKIDAATQ 119 Query: 120 DVLTQYSIECLV-RNRSS 136 ++L +IE L R+R+ Sbjct: 120 EILNSTTIEELAQRHRTG 137 >gi|118472493|ref|YP_885725.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family protein [Mycobacterium smegmatis str. MC2 155] gi|118173780|gb|ABK74676.1| transcriptional regulator, BadM/Rrf2 family protein [Mycobacterium smegmatis str. MC2 155] Length = 153 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 MHLT+ TD G+R LM + R++ IA++ SE + K + LV+ G+V R Sbjct: 1 MHLTRFTDLGLRTLMLLSAGESQDQRVTTRTIAKSANASEHHVAKAVSKLVEMGMVHARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L +I +V+ E V EC + CPL+ +C L L +A AF Sbjct: 61 GRVGGLELTEAGRTASIGRLVRELEGDREVIECGGA--APCPLIAACRLRRALAEAKEAF 118 Query: 119 FDVLTQYSIECLV 131 + L +Y++ L Sbjct: 119 YRELDRYTVTDLT 131 >gi|260588146|ref|ZP_05854059.1| iron-sulfur cluster assembly transcription factor IscR [Blautia hansenii DSM 20583] gi|331082288|ref|ZP_08331414.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541673|gb|EEX22242.1| iron-sulfur cluster assembly transcription factor IscR [Blautia hansenii DSM 20583] gi|330400774|gb|EGG80375.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium 6_1_63FAA] Length = 150 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 1/101 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A+++D I I+ IS+ +L ++++ L KAG+V + RG Sbjct: 1 MKLSTKGRYGLRALIDLALYSDEEAVSIQSISNRQNISDSYLEQLMRKLKKAGLVVSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 +GG RL +PAD+I++ DV++A E S C A + C Sbjct: 61 AQGGYRLAKPADEISVGDVLRALEGSLEAVSCGAGNNEHCQ 101 >gi|169630216|ref|YP_001703865.1| hypothetical protein MAB_3134c [Mycobacterium abscessus ATCC 19977] gi|169242183|emb|CAM63211.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 137 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT+ TD G+R++M A+ PN +A C+S K++ L + G +E+ Sbjct: 1 MQLTRFTDLGLRIVMRLAVEG--PNAQLHTDDLAAQLCVSYTHATKVVARLSEMGAIEST 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GGVR+ + + + + E S V +C CPL +C L LR A +A Sbjct: 59 RGRHGGVRITQDGLGRRVGSLARKLERSGEVIDCEGDPP--CPLRRNCRLREALRSAQDA 116 Query: 118 FFDVLTQYSIECLVR 132 FF L Q+++ + R Sbjct: 117 FFTHLDQWTVAEIAR 131 >gi|297566014|ref|YP_003684986.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850463|gb|ADH63478.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus DSM 9946] Length = 151 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ ++ YG+R L+ + + +AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKSQYGLRALVEIGLRAPEAVPLKDVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG +L +P +++T L+VV+A E S C + C G C ++ ++ A Sbjct: 61 KGGYKLGKPPEKLTALEVVEALEGSLAPVTCLDDPE-SCYHTGHCSTEALWKRVDLAMRG 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL S++ L+ R I+ Sbjct: 120 VLGSTSLKDLIEQRRIIE 137 >gi|218289783|ref|ZP_03493983.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|258510985|ref|YP_003184419.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240074|gb|EED07259.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|257477711|gb|ACV58030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 144 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ RT+YG+R ++ A ++ P + IAEA I E FL +I+ L +A +V +VR Sbjct: 1 MKISSRTEYGLRAMVALARMAGHERPVPLRAIAEAEAIPEPFLDQIMAKLRRANLVTSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKAL 115 G GG L RPA++I++ ++V+ E S C D C L C SV + Sbjct: 61 GVNGGYHLSRPAEEISVGELVRVLEGSLAPIACVDDADPDSASCDLYAGCHARSVWVRVT 120 Query: 116 NAFFDVLTQYSI 127 A L Q S+ Sbjct: 121 KAIARALDQLSL 132 >gi|23097775|ref|NP_691241.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22775999|dbj|BAC12276.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 141 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS----QIAEACCISELFLFKILQPLVKAGIVET 56 M +K T+Y + ++Y A D P S ++AE +S +L KIL LVK+G++E+ Sbjct: 1 MKFSKATNYALHTMVYLA---DIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIES 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 G +GG RL R AD IT LDV++A E + C H D Sbjct: 58 TPGAKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDD 99 >gi|71274966|ref|ZP_00651254.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon] gi|71901204|ref|ZP_00683307.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|170730004|ref|YP_001775437.1| hypothetical protein Xfasm12_0819 [Xylella fastidiosa M12] gi|71164698|gb|EAO14412.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon] gi|71729048|gb|EAO31176.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|167964797|gb|ACA11807.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 153 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A H +++AE + + KIL+PL +AG+VE RG Sbjct: 2 LRVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 GG RL R +IT++ +V+A E + EC H C + CG+ S Sbjct: 62 YGGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRS 109 >gi|237808576|ref|YP_002893016.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] gi|237500837|gb|ACQ93430.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] Length = 154 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R LM+ A + + + +I+ IS + K++ LV G + +VRG Sbjct: 1 MKLTTYTDYGLRTLMFMACLSPGARSSVVEISNYYDISRNHMVKVVVQLVSLGYLSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L R I I V++ E + +C + C LV C LT+ L+ + AF Sbjct: 61 KNGGITLARLPRDIRIGQVIRDLESNLNGVDCGSPG---CKLVPVCRLTNALKVGMEAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + ++++ LV N I I Sbjct: 118 AAMDEFTLSDLVNNADQIIAIL 139 >gi|222054501|ref|YP_002536863.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221563790|gb|ACM19762.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 154 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 6/129 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A ++ + P +I I+ IS +L +I Q L K GI+ + RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQNISPRYLEQIFQALKKKGILNSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKA--- 114 +GG L R D+IT+ D+V+ATE + +C +K C G C +V +A Sbjct: 61 PQGGYCLARNPDEITVRDIVQATEGDTLLVDCSGGKKNKQHCGFDGGCVTQTVWDEASRE 120 Query: 115 LNAFFDVLT 123 LN F +T Sbjct: 121 LNRLFGSIT 129 >gi|148265924|ref|YP_001232630.1| BadM/Rrf2 family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399424|gb|ABQ28057.1| transcriptional regulator, BadM/Rrf2 family [Geobacter uraniireducens Rf4] Length = 154 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 6/129 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A ++ + P +I I+ IS +L +I Q L + GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQEISPRYLEQIFQSLKRKGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKA--- 114 +GG L + ++IT+ D+++ATE + +C S K +C GSC +V +A Sbjct: 61 PQGGYCLAKNPEEITVKDIIQATEGDTMLVDCAGSKKKKGECAFDGSCVTQTVWEEANAK 120 Query: 115 LNAFFDVLT 123 LN F +T Sbjct: 121 LNELFASIT 129 >gi|225412244|ref|ZP_03761433.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme DSM 15981] gi|225042209|gb|EEG52455.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DYG+R++ A+ + I QI E CI + F +KIL+ L AG+V+ RG Sbjct: 24 MMITRESDYGVRIIR--ALKDGGLMTIGQICERECIPKQFAYKILKKLELAGLVQIKRGF 81 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG L R +T+ DV++AT+E FF+ C + DC Sbjct: 82 GGGCALARDLADMTLYDVIRATDEEFFLTHCLQAD-FDCE 120 >gi|85704175|ref|ZP_01035278.1| Rrf2 family protein [Roseovarius sp. 217] gi|85671495|gb|EAQ26353.1| Rrf2 family protein [Roseovarius sp. 217] Length = 140 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 68/127 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R+LM A D +++A +S L KI+Q L +AG+++T RG Sbjct: 1 MRLTSFTDFGLRMLMRMASAPDRAFSSAELATEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP QI + DV++ E + CF DC L G C L + LR A AF D Sbjct: 61 GGGALLARPPAQIRLGDVIRHLESGQALVACFGPEAGDCSLDGRCRLKARLRSAERAFLD 120 Query: 121 VLTQYSI 127 L + ++ Sbjct: 121 DLDRSTL 127 >gi|54025656|ref|YP_119898.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017164|dbj|BAD58534.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 152 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L++ TD G+R +M A+ R++ +A SE ++ K + L + G+V++ R Sbjct: 1 MQLSRFTDLGLRAMMRLAVGGAAEERVTVRLVARQVNASEHYVAKAVTKLAELGLVDSHR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L T+ +V+ E + V +C H CPL +C L +L A F Sbjct: 61 GRTGGIFLTDRGRAATVGQIVRGLEGAAEVVDCAGEHP--CPLAAACRLRRMLADAQEMF 118 Query: 119 FDVLTQYSIECLVRNRS 135 + L +Y++ LV R+ Sbjct: 119 YRELDKYTLRDLVDERT 135 >gi|226313931|ref|YP_002773827.1| hypothetical protein BBR47_43460 [Brevibacillus brevis NBRC 100599] gi|226096881|dbj|BAH45323.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 132 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ TDY + ++Y A D P + +AE +S+ +L K+L LVKAG++ +V G Sbjct: 1 MKYSQATDYALHAMLYLVAEAPDKPVSVQLLAEKLGVSQTYLSKMLTKLVKAGLIHSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG +L R D I+ LDV++A E + + EC H C Sbjct: 61 ANGGYKLKRNQDDISFLDVIQAIEGTTSLFECSFRHDSAC 100 >gi|46578944|ref|YP_009752.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603455|ref|YP_967855.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|464693|sp|P33395|RRF2_DESVH RecName: Full=Protein rrf2 gi|290384|gb|AAA72001.1| rrf2 [Desulfovibrio vulgaris str. Hildenborough] gi|46448357|gb|AAS95011.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563684|gb|ABM29428.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] gi|311232802|gb|ADP85656.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 150 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+L+ A+H ++ P I IA+ IS +L K+++ L KAG + + G Sbjct: 1 MKLTTRSRYGTRMLLDIAMHGSEQPVSIKDIAQRQGISVKYLEKLIRVLRKAGYITSTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L A+ I + DVV A EE EC + CP + C ++ +A A + Sbjct: 61 AHGGYQLAHKAEDIPVGDVVYALEEMEAPVECDEENPC-CPRMAVCLTRTIWGEAAKAMY 119 Query: 120 DVLTQYSIECLVRNRS 135 L +++ L+R+ S Sbjct: 120 RKLNTFTLADLMRDAS 135 >gi|193213019|ref|YP_001998972.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum NCIB 8327] gi|193086496|gb|ACF11772.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum NCIB 8327] Length = 141 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ +YG+ + Y A+ + P + ++A S++FL K +Q L KAGI +V+G Sbjct: 2 LQVSRKFEYGLHAVSYLAMKGPERPVTVKELASEIGFSQVFLAKAMQSLNKAGITRSVQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RPA+QIT+ D+ A E + C + DC + +C + + Sbjct: 62 VKGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCDCEIESTCSHKAYMFNLQKRIQ 120 Query: 120 DVLTQYSIECLVRN 133 +L + ++ L+ N Sbjct: 121 QLLAETTVASLLHN 134 >gi|6136580|sp|Q55433|Y846_SYNY3 RecName: Full=Putative HTH-type transcriptional regulator slr0846 Length = 147 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y ++ L+ A+ DY P + IAE I +L K+L L +AGIV RG Sbjct: 1 MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L + DQI++ ++ A EES E F + D L SV R+ F Sbjct: 61 VRGGYQLAQAPDQISLGQILAALEESL---EPFPQYGDDQSLAEDWVTLSVWRQLHQKFV 117 Query: 120 DVLTQYSI 127 L YSI Sbjct: 118 KAL--YSI 123 >gi|291287793|ref|YP_003504609.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290884953|gb|ADD68653.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 134 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ +DY IR L++ A H S++A C I + FL KILQ L K+ I+ + R Sbjct: 1 MKVTRASDYAIRALIHMA-HKPLGTTFMRSELAAECEIPDSFLGKILQNLAKSEILSSER 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G++GG ++ + +IT+ D++ A E + +C C LV SC ++ + Sbjct: 60 GKKGGFKVAKNPAEITVYDIISAIEGDIALNKCIFDEDF-CSLVHSCTAHNMWSDIQDNL 118 Query: 119 FDVLTQYSIECLVR 132 ++L YS+ L Sbjct: 119 VEMLKSYSLAKLTE 132 >gi|16331737|ref|NP_442465.1| hypothetical protein slr0846 [Synechocystis sp. PCC 6803] gi|7429419|pir||S75800 hypothetical protein slr0846 - Synechocystis sp. (strain PCC 6803) gi|1673323|dbj|BAA10535.1| slr0846 [Synechocystis sp. PCC 6803] Length = 157 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y ++ L+ A+ DY P + IAE I +L K+L L +AGIV RG Sbjct: 11 MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L + DQI++ ++ A EES E F + D L SV R+ F Sbjct: 71 VRGGYQLAQAPDQISLGQILAALEESL---EPFPQYGDDQSLAEDWVTLSVWRQLHQKFV 127 Query: 120 DVLTQYSI 127 L YSI Sbjct: 128 KAL--YSI 133 >gi|303241873|ref|ZP_07328367.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] gi|302590547|gb|EFL60301.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] Length = 149 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+HN + P + IAE ISE +L ++ L KAG V++VRG Sbjct: 1 MKLSTKGRYGVKSMLDLALHNGEGPVALKSIAERQDISENYLEQLFATLRKAGHVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCG---LTSVLRKAL 115 +GG L + ITI +++A E S EC I C C + +R + Sbjct: 61 SQGGYILANSPENITIGAILRALEGSLAPVECVVEDDPIKCTKSDQCVTRIIWEKIRDKV 120 Query: 116 NAFFDVLTQYS-IECLVRNRSSIKKIFN 142 N D +T Y IE +N S IFN Sbjct: 121 NEVVDSITLYDLIEEYTKNNESKGYIFN 148 >gi|194364780|ref|YP_002027390.1| transcriptional regulator TrmB [Stenotrophomonas maltophilia R551-3] gi|194347584|gb|ACF50707.1| transcriptional regulator, TrmB [Stenotrophomonas maltophilia R551-3] Length = 151 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 RGG RL R A +I++ +VV+A E + EC H C + CG S R Sbjct: 62 RGGYRLTRAAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWR 112 >gi|225849877|ref|YP_002730111.1| Rrf2 family protein [Persephonella marina EX-H1] gi|225646286|gb|ACO04472.1| Rrf2 family protein [Persephonella marina EX-H1] Length = 142 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 IR ++Y A + D + +S +IAE +S FL K LQ LVK G++E+ RG GGVRL + Sbjct: 10 IRAMIYIAKYGDRNSFLSIHKIAEDLDLSFYFLSKNLQKLVKVGLLESYRGPNGGVRLAK 69 Query: 69 PADQITILDVVKATEESFFVAEC 91 P DQI +LD++ A + + F +C Sbjct: 70 PPDQIKLLDIIDAIDGTEFFNKC 92 >gi|157828690|ref|YP_001494932.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933410|ref|YP_001650199.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] gi|157801171|gb|ABV76424.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908497|gb|ABY72793.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] Length = 142 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDYG+R L+Y A P RI +I+E IS L K++ L + G + + Sbjct: 1 MQLTSFTDYGLRSLIYLA---STPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G+ G ++L + + D+++ E + + ECF + C + S +++A A Sbjct: 58 KGKGGRIKLAFSPSSMNLGDIIEKFEPNMDIVECFNKNTNSCRITNSYQFKHFIKEASEA 117 Query: 118 FFDVLTQYSIE 128 F L Y++E Sbjct: 118 FIKTLNNYTLE 128 >gi|268609758|ref|ZP_06143485.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 145 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H D + +IAE IS+ +L +I+ L K+ ++ T RG Sbjct: 1 MKISTKGRYALRMLFDLASHYDEGFISLKEIAERQNISKKYLEQIVPLLNKSNLLRTNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R A++IT+ DV++ATE S C +CP G C V ++ Sbjct: 61 NKGGYMLARKANEITVADVLEATEGSLAPVACLEFEPNECPRAGECSTLFVWEGLYSSIK 120 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ ++ + S + Sbjct: 121 KYLSSISLQDIIDHSSDL 138 >gi|149176060|ref|ZP_01854677.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797] gi|148845214|gb|EDL59560.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797] Length = 139 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LMY A +D ++ +AE IS + K++ L + G + +VRG Sbjct: 1 MQLTMQTDYALRTLMYLASQDDRAT-VANVAELFQISSHHVAKVVNQLSRLGYIRSVRGM 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L P ++I + DV++ E + + EC + + C + C L VL +A + Sbjct: 60 GGGIELAVPLEKIRLGDVIERFEGNLHLLECVGTENV-CIIQPFCKLKGVLAEAERVQLE 118 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L ++ + + +K I Sbjct: 119 YLNSVTLADVAPSHRQLKSI 138 >gi|148556886|ref|YP_001264468.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502076|gb|ABQ70330.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 137 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 11/133 (8%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++RT Y IR L++ A H+ + P ++++IAE I FL IL + +AG VET+RG+ Sbjct: 2 LSQRTRYAIRALLHLADHHGEGPIQLAEIAERQNIPAKFLTVILSEMKRAGFVETMRGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCGLTSVLRKA 114 GG L R +IT D+V+AT S + C A H ID C L V+ Sbjct: 62 GGYWLSRAPTEITYGDIVRATRGSLALVPCAARLAYTPCDHCID---ETECRLRGVMLSV 118 Query: 115 LNAFFDVLTQYSI 127 + +L Q S+ Sbjct: 119 RDETAKILDQLSL 131 >gi|160941172|ref|ZP_02088509.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC BAA-613] gi|158435733|gb|EDP13500.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC BAA-613] Length = 131 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 1/125 (0%) Query: 18 AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 AIH D P +I IA IS +L +I+ L +AG V ++RG +GG L RP+ T+ Sbjct: 5 AIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGFVRSIRGNQGGYYLARPSSDYTVG 64 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 +++ TE S +C + K C C + R+ A V+ +Y++E LV+ + S Sbjct: 65 SILRITEGSLAPVDCLSGDKNPCTRQMDCVTLRLWRELDEAISGVVDKYTLEDLVQWQKS 124 Query: 137 IKKIF 141 +K + Sbjct: 125 MKDNY 129 >gi|299822759|ref|ZP_07054645.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816288|gb|EFI83526.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 150 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 3/85 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +K T+Y + ++Y A H N + ++AE +S +L K+L LVKAG++E+V Sbjct: 8 MKYSKATNYALHTMVYLA-HTTLENTLGVKELAERFQVSSTYLSKVLTTLVKAGLIESVS 66 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G +GG +L R ++ IT LDVV+A E Sbjct: 67 GVKGGYKLARSSETITFLDVVQAVE 91 >gi|225174416|ref|ZP_03728415.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] gi|225170201|gb|EEG78996.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] Length = 140 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R + A+ P + +IA+ IS FL +I PL +AG++++VRG Sbjct: 1 MKVSAKGEYGVRAMAILALEFRAGPIPLREIAKREGISYQFLEQIFLPLRRAGLIDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L RP D+I + D+++A E EC D C +C + K + Sbjct: 61 AKGGYVLARPPDEIKVGDILRALEGPIAPVECVGEGNTDACGRSAACLTRGIWEKLRDTM 120 Query: 119 FDVLTQYSIECLVR 132 +VL ++ +++ Sbjct: 121 SEVLNDITLADVIK 134 >gi|39996739|ref|NP_952690.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39983620|gb|AAR35013.1| Rrf2 family protein [Geobacter sulfurreducens PCA] Length = 136 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A I IS+IAEA + + FL KILQ K GIV++ RG Sbjct: 1 MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +IT+ +VV+A E C C CG+ V RK Sbjct: 61 AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLGSG-TCERDNICGVHPVWRKVQERVA 119 Query: 120 DVLTQYSIECL 130 + L ++E L Sbjct: 120 ETLDAVTLEEL 130 >gi|298505751|gb|ADI84474.1| transcriptional regulator, putative [Geobacter sulfurreducens KN400] Length = 137 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A I IS+IAEA + + FL KILQ K GIV++ RG Sbjct: 2 MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +IT+ +VV+A E C C CG+ V RK Sbjct: 62 AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLGSG-TCERDNICGVHPVWRKVQERVA 120 Query: 120 DVLTQYSIECL 130 + L ++E L Sbjct: 121 ETLDAVTLEEL 131 >gi|226361387|ref|YP_002779165.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226239872|dbj|BAH50220.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 157 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RV+M A+ D S+ IAE +S K++ L + GIV+ RG Sbjct: 1 MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYTHAAKVITRLGELGIVDARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + ++ + + E V +C + CPL +C L S LR+A +AFF Sbjct: 61 RAGGLAITELGRTASVGWLARRLEGDAEVVDCDGAQP--CPLRSNCLLRSALRRAQDAFF 118 Query: 120 DVLTQYSIECLVRN 133 L ++E L R Sbjct: 119 TSLDALTVEDLTRT 132 >gi|283850155|ref|ZP_06367444.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283574181|gb|EFC22152.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 145 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +Y IR +++ ++H D P R +IAEA I FL K+ Q L +AGI+ + Sbjct: 1 MRLTRAGEYAIRCVLHLSMHRDRPVITR-KEIAEAMDIPAQFLGKVAQHLARAGIIAIRQ 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R + IT+L +V+A + F+ +C S C C + V KA + Sbjct: 60 GAQGGYELVRRPEDITLLSLVEAIDGEIFLNDCI-SRPESCDRRKLCSVHRVWDKARSQL 118 Query: 119 FDVLTQYSIECLVRNRS 135 + L ++ L S Sbjct: 119 RETLGSTTLAALAETES 135 >gi|298530274|ref|ZP_07017676.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] gi|298509648|gb|EFI33552.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] Length = 143 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57 M LT+ +Y +R ++Y A P +++ ++A+A I E F+ K+ Q L +AGI++ Sbjct: 1 MMLTRGGEYAVRCVLYLAACTT-PGQVAPKKEVAQAMQIPESFMAKVAQTLSRAGIIQIT 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G RGG RL + ++++L VV+A + F+ +C S + C SCG+ V A Sbjct: 60 QGARGGYRLLKDPSRLSLLQVVEAVDGEIFLNQCIMSPE-SCRRSPSCGVHRVWETARQR 118 Query: 118 FFDVLTQYSIECLVRN 133 L + L R Sbjct: 119 LRQTLDETDFATLARE 134 >gi|108803666|ref|YP_643603.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764909|gb|ABG03791.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter xylanophilus DSM 9941] Length = 150 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK++ Y +R L+ + P +S+IA I E FL +I L +AGI+E+ RG Sbjct: 1 MRLTKKSKYAVRALVEVVLRGSGGPVGVSEIARRQRIPERFLEQIFGELRRAGILESHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116 GG P +++T+LD+V+ + A C A + D PL C + V +A Sbjct: 61 AHGGYSFSMPPEEVTVLDIVEVLDGEIRPARCSAGGVCYIDDAPL---CSTSRVWDEARV 117 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 A V +YSI L I+ Sbjct: 118 ALEGVFGRYSIAQLAAAEREIR 139 >gi|330992600|ref|ZP_08316548.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329760799|gb|EGG77295.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 137 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IRVL+Y A + + + +I+++ IS L K++ L AG+V RGR Sbjct: 1 MRLTLHTDYAIRVLVYLARNPERRVSVHEISDSHGISHNHLVKVVNRLSHAGVVVARRGR 60 Query: 61 RGGVRL-CRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GG++L C P +I I D+V+ E V C + C L C L +L +++ AF Sbjct: 61 SGGLQLPCLP-HEIVIGDIVRLMETDMDSVVACQPENGQHCLLADICRLRHLLAQSMRAF 119 Query: 119 FDVLTQYSIECLVRNRSS 136 VL + ++ ++ +R + Sbjct: 120 LKVLDETTLNDILPDRRA 137 >gi|144898377|emb|CAM75241.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 140 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L+Y ++ + + + +I+E IS L KI++ L + G + TVRG+ Sbjct: 1 MKITQFTDYSLRLLIYLSMRREGVSTVREISEFYSISSEHLKKIVRRLSELGHIRTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L R DQI + +++ +E V C S CP+ G C L SV+ A +AF Sbjct: 61 HGGLMLAREPDQINLGALLRQSENLNLVP-CHDSGDT-CPIFG-CKLRSVIEDARDAFL 116 >gi|331085024|ref|ZP_08334111.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408724|gb|EGG88189.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 152 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A +++ P IS IA ISE +L +++ L KAG+++++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L R + I++ DV++A E + EC H + C G C V +K + Sbjct: 61 AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + + ++ LV ++K Sbjct: 121 NQTVDEIKLDRLVEESKAMK 140 >gi|223935874|ref|ZP_03627789.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] gi|223895475|gb|EEF61921.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] Length = 153 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R +Y +R L+ ++ D RI I++ I + FL +IL L AGIV++ RG Sbjct: 1 MKLSLRGEYALRALIVLGLNYDQSVVRIQTISDQQNIPKRFLEQILNDLKTAGIVDSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116 GG RL + DQIT+ V++ E C + K CP CG+ S++++ + Sbjct: 61 VSGGYRLGKAPDQITLATVIRYIEGPLAPVSCVSEKFYEKCSCPDESKCGIRSIMKEVRD 120 Query: 117 AFFDVLTQYSI 127 A +L ++ Sbjct: 121 AIVKILDGVTV 131 >gi|256827284|ref|YP_003151243.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583427|gb|ACU94561.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 170 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+R DY R+L H D +++I+E I F I LV+AG V TVRG Sbjct: 1 MELTRRCDYACRILRSAYRHRDRFVSVAEISEEEEIPYAFARTIQHDLVQAGYVRTVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNA 117 GG++L Q+T+LDV+ A + V+ C A + C C L V K LN Sbjct: 61 HGGLQLAIDLSQVTVLDVLHALQGEVTVSACAADPQ-SCSKSEGCRFNQLWQVADKMLNT 119 Query: 118 FFDVLT 123 FD +T Sbjct: 120 LFDSVT 125 >gi|221194677|ref|ZP_03567734.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] gi|221185581|gb|EEE17971.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] Length = 142 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 Y +R + A+H+ + + + ++E IS +L +++ + KAG VE++RG+ GG RL R Sbjct: 11 YALRAMADLAVHDGWIS-LGDVSERQHISRKYLEQVISLMHKAGYVESLRGKGGGYRLTR 69 Query: 69 PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR---KALNAFFDVLT 123 ++ T+ ++++ATE + A C +++ CP +GSC ++ R K ++F D T Sbjct: 70 KPEEYTLGEILRATEGNLAPASCLNCTNETLCPQMGSCTTVNIWRDLGKMTSSFLDSKT 128 >gi|167750933|ref|ZP_02423060.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702] gi|167656112|gb|EDS00242.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702] gi|291557420|emb|CBL34537.1| rrf2 family protein (putative transcriptional regulator) [Eubacterium siraeum V10Sc8a] Length = 135 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T TDY IR++ + + ND I+E + + F KIL+ L AGIV + +G Sbjct: 1 MHITLETDYAIRIVDFM-VKNDGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG L R ++++ DVV+A E ++ + C H Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEGTYMFSRCLDGH 94 >gi|225018254|ref|ZP_03707446.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum DSM 5476] gi|224948951|gb|EEG30160.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum DSM 5476] Length = 145 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R++ A H N + +IA+ IS+ +L +I+ L AG+V++VRG Sbjct: 1 MKISTKGRYGLRLMFELAYHYNKGLVPLKEIAKRQEISDKYLEQIIMRLNHAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L P ++ T+ +V+ E S V EC ++ ++C + SC + K A Sbjct: 61 AQGGYMLAAPPEETTVEEVLTVLEGSLCVVECIGANGVECKNINSCPTYGIWSKINQAIQ 120 Query: 120 DVLTQYSIECLVRN 133 V++ ++ +V + Sbjct: 121 QVVSNITLADMVED 134 >gi|20807692|ref|NP_622863.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20516241|gb|AAM24467.1| predicted transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 149 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YGI+ + A++ + P + IAE +SE +L +++ L KA +V++VRG Sbjct: 1 MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLMAILRKADLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E S A+C +C G C V+ + ++ Sbjct: 61 AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVVEDTPFECSRAGGCPTKLVMERIRDSI 120 Query: 119 FDVLTQYSIECLVRN 133 V+ +++ +V + Sbjct: 121 NKVIDSITLQDMVED 135 >gi|51241738|dbj|BAD36774.1| CDG1D [Gluconacetobacter xylinus] Length = 138 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 1/129 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR L+Y + I +IA+ IS+ L K++ L G++ RGR Sbjct: 1 MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAQTHSISQNHLVKVVNRLSSNGVILARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L QI I D+++ E + C + C L +C L + K++NAF Sbjct: 61 SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLRGLFAKSVNAFL 120 Query: 120 DVLTQYSIE 128 VL + ++ Sbjct: 121 SVLDRITLH 129 >gi|313620173|gb|EFR91654.1| putative transcriptional regulator [Listeria innocua FSL S4-378] Length = 138 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 11/136 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG VE+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G GG +L PA+ I+ LDV++A E +FF + +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPANSISFLDVIQAIEGKAAFFHCDP-KNHSESQP---HCLIGEVMNKAE 114 Query: 116 NAFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 115 QQMEDYLSKQAVGSIV 130 >gi|254490830|ref|ZP_05104013.1| Transcriptional regulator superfamily [Methylophaga thiooxidans DMS010] gi|224464002|gb|EEF80268.1| Transcriptional regulator superfamily [Methylophaga thiooxydans DMS010] Length = 129 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MY A++ D+ I+ IA+ ISE L K++ L + ++T+RG+ GG+RL + +I+ Sbjct: 1 MYLALNQDHVVTIANIADTYKISENHLTKVVHYLGQQAYIKTIRGKGGGMRLNKTPTEIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + D+ + TE + C DC ++ C L ++L ++ A + V +Y++ LV ++ Sbjct: 61 LGDLFRKTEGKAGLLPCVNGEG-DCCIMSVCRLIAILNESQQALYHVFDKYTLADLVVDK 119 Query: 135 SSIKKIF 141 S+ +I Sbjct: 120 FSLSQIL 126 >gi|88800857|ref|ZP_01116412.1| hypothetical protein MED297_17612 [Reinekea sp. MED297] gi|88776430|gb|EAR07650.1| hypothetical protein MED297_17612 [Reinekea sp. MED297] Length = 154 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+Y R+L+ + +S+IA A IS L K+ L++ +V+TVRGR Sbjct: 1 MKINSFTNYSFRILIMLGANPGRTIPLSEIASAYGISINHLKKVAARLIEQSLVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + + I + ++ + ++ EC + C + C L + +KAL F D Sbjct: 61 SGGLVLKKAPEDIRLGEIFRISQTDTAFVECMDASSEGCVISPVCRLQGIFQKALAQFID 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 + Y++ LV N+ I N Sbjct: 121 TMDGYTLADLVENKDDINVHLN 142 >gi|325282545|ref|YP_004255086.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] gi|324314354|gb|ADY25469.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] Length = 163 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGIVE 55 M ++ + YG+R L+ P + +AE +S+ +L +I L +AG ++ Sbjct: 1 MWVSTKAQYGLRALIEIGRGGGTPGEGRAVPLKDVAERQDLSQHYLEQIASNLRRAGFIK 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 +VRG GG RL RPADQI+ DVV A E S EC + + C CG + ++ Sbjct: 61 SVRGAYGGYRLARPADQISAYDVVTALEGSIAPVECVEENHV-CDGKNVCGTLDLWQRVD 119 Query: 116 NAFFDVLTQYSIECLVRN 133 A DVL ++ L+ + Sbjct: 120 QALRDVLGSTTLADLIED 137 >gi|312792436|ref|YP_004025359.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877006|ref|ZP_07736980.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|311796237|gb|EFR12592.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|312179576|gb|ADQ39746.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 137 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY +R++++ + IA+ I + FL KI + LVKAGI+E+VRG+ Sbjct: 1 MKLTQAADYALRMVLHLSKKRGMVVEADTIAQEEKIPKRFLLKISRDLVKAGIIESVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++IT+ DV+ A E + + C + + G C + + Sbjct: 61 NGGYTLAKKPEEITMKDVIIAVEGTLALTRCLYDPLACNKKATGYCAVHKAFCSVMEKVS 120 Query: 120 DVLTQYSIECLV 131 D L +Y+ + LV Sbjct: 121 DELEKYTFDKLV 132 >gi|242280449|ref|YP_002992578.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123343|gb|ACS81039.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio salexigens DSM 2638] Length = 143 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A H P RIS IA +S +L K+++ L KAG + + RG Sbjct: 1 MRLTTRSRYGTRMILDIATHCTAGPVRISDIASRQGLSTKYLEKLIRELKKAGFIASKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + IT+ VV++ E + EC + + C + +C V KA A + Sbjct: 61 PGGGHSLAMAPEDITVGAVVRSLEGDAGLVECLDNDDL-CKRIDNCPTREVWIKASKAMY 119 Query: 120 DVLTQYSIECLVRNRS 135 L + SI L++ S Sbjct: 120 AALDEISIADLLKEGS 135 >gi|94967516|ref|YP_589564.1| BadM/Rrf2 family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549566|gb|ABF39490.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Koribacter versatilis Ellin345] Length = 145 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 2/143 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LTK+ DYG+ + + A + D +AE + + L K+LQ L KAG++++ +G Sbjct: 2 LKLTKKADYGLIAMRHLAANADLGACSAKDLAEMYGLPQEALAKLLQRLTKAGLLQSQQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I+ LDV++A E F+ C + K C C + LRK + Sbjct: 62 TNGGYTLARNPRSISALDVIRALEGPLFMTSC-TTAKGSCEQTSKCTVREPLRKVSKSIE 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 DVL + +I + + ++ + Sbjct: 121 DVLGRLTIAEMCESEEPVRDLVT 143 >gi|326201925|ref|ZP_08191795.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] gi|325987720|gb|EGD48546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] Length = 148 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 15/151 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A H + +AE +SE +L ++ L K+G+V+++RG Sbjct: 1 MKVSTKGRYGLRAIVDLAAHESEGQVSLKSVAERQKLSENYLEQLFSSLKKSGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---------GLTSV 110 +GG L RPAD+IT+ D++++ E + EC ID L GSC + + Sbjct: 61 AQGGYLLSRPADKITVGDILRSLEGTLCPVEC-----IDPDLPGSCDRADECVTADVWAK 115 Query: 111 LRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 +R +N D +T + + N+++ I+ Sbjct: 116 IRDKINEVVDSITLADLVSELANKTNDDYIY 146 >gi|217970313|ref|YP_002355547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thauera sp. MZ1T] gi|217507640|gb|ACK54651.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T] Length = 171 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 9/123 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++K TDYG +L + A H D + + +AEA + + K+L+ L + +V + RG G Sbjct: 4 ISKLTDYGTLILTHMAGHPDRLHSAAGLAEALGLGLPTVSKVLKTLGRHELVSSQRGAHG 63 Query: 63 GVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSC-------GLTSVLRKA 114 G L RP D+IT+ DV+ A EE +F + EC +S + C + C + +V+R+A Sbjct: 64 GYALARPPDRITVADVIDALEEQAFGLTECSSSSGV-CAIESDCRIRENWMRINTVVRQA 122 Query: 115 LNA 117 L A Sbjct: 123 LQA 125 >gi|225388530|ref|ZP_03758254.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme DSM 15981] gi|225045409|gb|EEG55655.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme DSM 15981] Length = 144 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ A+H D P +I IA+ IS +L +I+ L +AG V ++RG Sbjct: 1 MLISTKGRYALRTMVDLALHADGEPVKIKDIAKRQEISGKYLEQIISILSRAGYVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RPA T+ +++ TE S +C C C + ++ A Sbjct: 61 NQGGYYLARPAKDYTVGMILRVTEGSLAPVDCLTGDDNPCARQQECVTLKLWKELDGAIR 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 DV+ Y+++ LV+ + +++ + Sbjct: 121 DVVDGYTLDDLVQWQRAMQDNY 142 >gi|78485133|ref|YP_391058.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363419|gb|ABB41384.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira crunogena XCL-2] Length = 145 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK+TD+ RVL+Y A + I I++ IS+ L K++Q LV G+V +VRG Sbjct: 1 MQLTKQTDFAFRVLIYLASKKTGELSNIQMISDRYEISKSHLMKVVQKLVSHGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L + +IT+ +V++ E + C + C + C L L +A N + Sbjct: 61 QHGGIYLEKELHEITLREVIELMEATLTPVNC---DEPGCKIKEVCQLKIYLVEAQNQYL 117 Query: 120 DVLTQYSIECLVRN 133 L Q+++ +V + Sbjct: 118 TYLEQFTLADIVND 131 >gi|297616499|ref|YP_003701658.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] gi|297144336|gb|ADI01093.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] Length = 144 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A+H N+ P + +AE +SE +L +++ PL KAG+V++VRG Sbjct: 1 MKVSTKGRYGLRAMLDMALHQNEGPMAVHIVAERQGLSERYLEQLMVPLKKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + IT+ ++++A E +C + +C C + K ++ Sbjct: 61 PQGGYVLTKKPRDITVGEIIRALEGPIAPVDCVSEQTPEECERAEFCVTRLIWSKMRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL S+E L++ I Sbjct: 121 AEVLDSLSLEDLIQESRKI 139 >gi|83590920|ref|YP_430929.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573834|gb|ABC20386.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica ATCC 39073] Length = 136 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 5/95 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETV 57 M L + TDY R ++Y A P I++ IA I FL KI++ LV+AGIV++ Sbjct: 1 MRLNQATDYAFRAVLYLAKLE--PGTIAEAQMIASREDIPMRFLLKIMRSLVQAGIVQSY 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 RG GG L RPA +IT+LDVV+A E V C Sbjct: 59 RGVSGGFALARPAREITLLDVVEAVEGPVSVNRCL 93 >gi|167037461|ref|YP_001665039.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040123|ref|YP_001663108.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp. X514] gi|256752922|ref|ZP_05493755.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus CCSD1] gi|289578240|ref|YP_003476867.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermoanaerobacter italicus Ab9] gi|297544520|ref|YP_003676822.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914207|ref|ZP_07131523.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X561] gi|307265215|ref|ZP_07546774.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter wiegelii Rt8.B1] gi|307724558|ref|YP_003904309.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115875|ref|YP_004186034.1| Rrf2 family transcriptional regulator [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390150|ref|ZP_08211711.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus JW 200] gi|166854363|gb|ABY92772.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X514] gi|166856295|gb|ABY94703.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748202|gb|EEU61273.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus CCSD1] gi|289527953|gb|ADD02305.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter italicus Ab9] gi|296842295|gb|ADH60811.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889142|gb|EFK84288.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X561] gi|306919837|gb|EFN50052.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter wiegelii Rt8.B1] gi|307581619|gb|ADN55018.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X513] gi|319928966|gb|ADV79651.1| transcriptional regulator, Rrf2 family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993798|gb|EGD52229.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus JW 200] Length = 149 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YGI+ + A++ + P + IAE +SE +L +++ L KA +V++VRG Sbjct: 1 MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLIAILRKADLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVL---RKAL 115 +GG L P D+IT+ DV++ E S A+C +C G C V+ R ++ Sbjct: 61 AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVLEDTPFECSRAGGCPTKLVMERIRDSI 120 Query: 116 NAFFDVLT 123 N D +T Sbjct: 121 NKVIDSIT 128 >gi|28198602|ref|NP_778916.1| hypothetical protein PD0694 [Xylella fastidiosa Temecula1] gi|71897700|ref|ZP_00679945.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|182681285|ref|YP_001829445.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa M23] gi|28056686|gb|AAO28565.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|71732603|gb|EAO34656.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|182631395|gb|ACB92171.1| transcriptional regulator, BadM/Rrf2 family [Xylella fastidiosa M23] gi|307579736|gb|ADN63705.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 153 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 1/109 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK TDY VL A H +++AE + + KIL+PL +AG+V RG Sbjct: 2 LRVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVAGRRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 GG RL R +IT++ +V+A E + EC H C + CG+ S Sbjct: 62 YGGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRS 109 >gi|313624752|gb|EFR94699.1| putative transcriptional regulator [Listeria innocua FSL J1-023] Length = 138 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 11/136 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG +E+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G GG +L PA I+ LDV++A E +FF + +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKAAFFHCDP-KNHSESQP---HCLIGEVMNKAE 114 Query: 116 NAFFDVLTQYSIECLV 131 D L++ +I +V Sbjct: 115 QQMEDYLSKQTIGSIV 130 >gi|239977954|ref|ZP_04700478.1| transcriptional regulator [Streptomyces albus J1074] Length = 144 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG Sbjct: 1 MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPAD+IT+LDV +A + + + P G+ GL V R+ +A Sbjct: 61 EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 119 Query: 121 VLTQYSIECLVRNRS 135 +L ++ L+ + + Sbjct: 120 ILQGVTLTSLLADEA 134 >gi|73542904|ref|YP_297424.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha JMP134] gi|72120317|gb|AAZ62580.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha JMP134] Length = 150 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 13/142 (9%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY A P I+++ + +S L K+ L K G + RG Sbjct: 1 MQLTRFSDYALRLLMYVARADGSRPITIAEVGQQFEVSHHHLVKVAARLSKLGWITATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ADQ+TI +++ E V +C C L G+C L L +A AF+ Sbjct: 61 RHGGLELGPQADQLTIGTILRELEGHKPVIDC---DDPPCALKGNCRLRRALDEAEQAFY 117 Query: 120 ---------DVLTQYSIECLVR 132 DV + E ++R Sbjct: 118 RSLDTVTLADVTGSQTAESIIR 139 >gi|310824816|ref|YP_003957174.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397888|gb|ADO75347.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca DW4/3-1] Length = 177 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YGI L++ ND P +AE IS FL KI L KAGIV G R Sbjct: 3 HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL + + I+ L++V A E + +C F G C + +V+ Sbjct: 63 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A + + L + S+ Sbjct: 123 RAEKSMRETLAKESL 137 >gi|182413876|ref|YP_001818942.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1] gi|177841090|gb|ACB75342.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae PB90-1] Length = 200 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57 M L+K+ +Y +R L+ I + ++ Q++E +L FL +I+Q L G V +V Sbjct: 1 MKLSKKGEYALRSLINLGIAAEMGRKLVQVSELADYEQLPVKFLEQIMQALKDEGFVVSV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKA 114 RG+ GG RL +PA QI I VV+ + C + CP CGL ++ Sbjct: 61 RGKFGGYRLAKPAKQILIGQVVRLIDGPLAPIGCVSQTAYVPCTCPDETHCGLRMLMLDV 120 Query: 115 LNAFFDVLTQYSIECLV 131 NA ++L +YS+ +V Sbjct: 121 RNAIANILDRYSLADVV 137 >gi|116622605|ref|YP_824761.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225767|gb|ABJ84476.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 141 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ DY +R++++ A + +D + +A AC I E F+ KILQ L ++G++ + RG Sbjct: 1 MQLTRAADYAVRMMIHLATLPSDSRTNRAALAAACEIPEPFVGKILQTLTRSGLIASHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +++LDV++A E + C C C V +A +A Sbjct: 61 VNGGFGLTQPPTAVSLLDVIEAVEGPTLLNICIRPGD-SCARKSWCPAHPVWVEAQHAMT 119 Query: 120 DVLTQYSIECLVRN 133 VL + ++ L ++ Sbjct: 120 AVLGRATLASLAQS 133 >gi|291449865|ref|ZP_06589255.1| transcriptional regulator [Streptomyces albus J1074] gi|291352814|gb|EFE79716.1| transcriptional regulator [Streptomyces albus J1074] Length = 147 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG Sbjct: 4 MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPAD+IT+LDV +A + + + P G+ GL V R+ +A Sbjct: 64 EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 122 Query: 121 VLTQYSIECLVRNRS 135 +L ++ L+ + + Sbjct: 123 ILQGVTLTSLLADEA 137 >gi|124516103|gb|EAY57611.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] gi|206602891|gb|EDZ39371.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 156 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LTK+ DY + L + + + I +++EA I L K+LQ L K GI+++ Sbjct: 2 LKLTKKVDYALLALSFLSQQEEGQVVNIREVSEAYQIPTEILAKVLQRLSKKGILQSHHA 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L +PA ++ILDV+ A + S + C H C + +C + S L + Sbjct: 62 PKGGYSLKKPARNVSILDVINAIDGSVGILSCSDGHDKTCQQIDNCDIRSPLERIQGKIM 121 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 +L S+E + + + + + Sbjct: 122 WLLEDMSLEEFIHSEPTTGGVLHG 145 >gi|134300796|ref|YP_001114292.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053496|gb|ABO51467.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum reducens MI-1] Length = 137 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 20/141 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL------FLFKILQPLVKAGIV 54 M L + TDY R ++Y + P Q++EA I+E FL KIL+ L AGI+ Sbjct: 1 MKLNQATDYAFRAVLYLS---RLPK--GQVSEAKAIAEQENIPIRFLLKILRSLTAAGII 55 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSC-G 106 E+ RG GG L R IT+LDVV+A E V C +H CP+ + Sbjct: 56 ESYRGVSGGYALAREPKDITMLDVVEAVEGPVEVNRCLIAPESCNKNHTARCPMHRALYA 115 Query: 107 LTSVLRKALNAF-FDVLTQYS 126 + L + LN++ F L+ Y+ Sbjct: 116 IQQNLNQQLNSYNFADLSHYN 136 >gi|257093906|ref|YP_003167547.1| BadM/Rrf2 family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046430|gb|ACV35618.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 146 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T+ TDY +R L+Y D I +IAE +S L K++ L++AG VE +RG+ Sbjct: 1 MYITQHTDYALRALIYLGTSGDRLVTIQEIAERFGVSRNHLMKVVNALIRAGFVEGLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R +I + VV+ E + ECF S C L C L L +AL AF Sbjct: 61 GGGLRLARAPGEIIVGAVVRQMEPGMCLVECFGS-GCQCILDPDCKLKVGLARALAAFLQ 119 Query: 121 VLTQYSIECLV-RNRSSIKKIF 141 VL + ++ LV ++ SI K Sbjct: 120 VLDEMTLADLVGKSERSILKFL 141 >gi|16799715|ref|NP_469983.1| hypothetical protein lin0640 [Listeria innocua Clip11262] gi|16802678|ref|NP_464163.1| hypothetical protein lmo0636 [Listeria monocytogenes EGD-e] gi|224502064|ref|ZP_03670371.1| hypothetical protein LmonFR_06027 [Listeria monocytogenes FSL R2-561] gi|255030335|ref|ZP_05302286.1| hypothetical protein LmonL_16821 [Listeria monocytogenes LO28] gi|16410025|emb|CAC98714.1| lmo0636 [Listeria monocytogenes EGD-e] gi|16413080|emb|CAC95872.1| lin0640 [Listeria innocua Clip11262] Length = 138 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG VE+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|325661219|ref|ZP_08149846.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472726|gb|EGC75937.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium 4_1_37FAA] Length = 180 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ + YG+R L+ A +++ P IS IA ISE +L +++ L KAG+++++RG Sbjct: 29 LKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 88 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L R + I++ DV++A E + EC H + C G C V +K + Sbjct: 89 AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 148 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + + ++ LV ++K Sbjct: 149 NQTVDEIKLDRLVEESKAMK 168 >gi|269137717|ref|YP_003294417.1| putative transcriptional regulator [Edwardsiella tarda EIB202] gi|267983377|gb|ACY83206.1| putative transcriptional regulator [Edwardsiella tarda EIB202] gi|304557773|gb|ADM40437.1| Nitrite-sensitive transcriptional repressor NsrR [Edwardsiella tarda FL6-60] Length = 124 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 8/117 (6%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I+Q+ E +S + KI+ L +AG V VRG+ GG+RL RPA +I I DVV+ E Sbjct: 12 ITQVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGDVVRELEPLT 71 Query: 87 FV--AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V ++ F C + +C L VL +A +AF L Q ++ L+ + + K+ Sbjct: 72 LVNCSQAF------CHITPACRLKQVLHRATDAFLAELDQCTLADLIEHNPPLYKLL 122 >gi|291619084|ref|YP_003521826.1| YjeB [Pantoea ananatis LMG 20103] gi|291154114|gb|ADD78698.1| YjeB [Pantoea ananatis LMG 20103] gi|327395416|dbj|BAK12838.1| transcriptional regulator YjeB [Pantoea ananatis AJ13355] Length = 152 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT TDYG+R L+Y A + I+++ + +S + KI+ L +AG V +RG Sbjct: 6 VQLTSFTDYGLRALIYMATLPEGRLTNITEVTDTYGVSRNHMVKIINQLSRAGFVSAIRG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL A I I +VV+ E V +C +C + +C L L A+ F Sbjct: 66 KNGGIRLGMSARDIVIGEVVRKMEPLQLV-DCS-----NCSIAPACRLKKALHDAVQLFL 119 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + + +I Sbjct: 120 QELDGYTLADLVEGNTPLYEII 141 >gi|315281262|ref|ZP_07869928.1| putative transcriptional regulator [Listeria marthii FSL S4-120] gi|313615086|gb|EFR88564.1| putative transcriptional regulator [Listeria marthii FSL S4-120] Length = 138 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG VE+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMDDYLSKQTVGSIV 130 >gi|229816044|ref|ZP_04446365.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM 13280] gi|229808358|gb|EEP44139.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM 13280] Length = 169 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L A N + AEA + F I LV+AGIVE++RG Sbjct: 10 MDISRKTDYALRMLAMLAEGNKSLLSVRTAAEAVDVPYSFARSIQHGLVQAGIVESLRGV 69 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL +ITI +V+A + + +C A + CP + C + A D Sbjct: 70 RGGMRLRLKPSEITIRQIVEAVQGPLVMNDCTAEEGM-CPRMECCCYHPIWAGAQELLRD 128 Query: 121 VLTQYSIECLVRNRS 135 L +++ +V +R Sbjct: 129 YLDSVTLDDVVNHRQ 143 >gi|218780199|ref|YP_002431517.1| BadM/Rrf2 family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761583|gb|ACL04049.1| transcriptional regulator, BadM/Rrf2 family [Desulfatibacillum alkenivorans AK-01] Length = 144 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +YG+R ++Y A + ++A I + FL KI Q L AGIVE ++G Sbjct: 1 MRLTRAGEYGVRCILYLAGCPRGEVVKKKEVALNMDIPDQFLSKIAQQLAVAGIVEIIQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG+RL R A +++LDVV+A F+ +C S C +C + V KA Sbjct: 61 SRGGLRLARDAKDVSLLDVVEAITGEIFLNDCV-SDPNSCRNQPTCSVHRVWSKARMQLR 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + L + LV ++K Sbjct: 120 ETLGLATFAGLVEEGHCLQK 139 >gi|307243658|ref|ZP_07525799.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis DSM 17678] gi|306492968|gb|EFM64980.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis DSM 17678] Length = 154 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG++ + A+ + + P + IA IS+ +L +I L KAG+V++VR Sbjct: 1 MKLSTKGKYGLKAMFELAVSGNENEPVPLKYIANRQEISDQYLEQIFSALKKAGLVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L +PA +IT+ D+++ E EC C SC V + A Sbjct: 61 GAQGGYFLSKPASEITVADILRVLEGDMAFTECLLDEDA-CKNFDSCSTRYVWARIKQAI 119 Query: 119 FDVLTQYSIECLVRNRSS 136 DV S++ + + +S Sbjct: 120 EDVTMSISLQDMADDYNS 137 >gi|91790106|ref|YP_551058.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666] gi|91699331|gb|ABE46160.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666] Length = 154 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDYG ++ + A + +++A A ++ KIL+ L +A +++++RG Sbjct: 2 LRLSKLTDYGTVIMTHMARQPAHVYSAAEVALAVSVTVPTASKILKTLARANLLQSLRGT 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP D+I+I +VV A E V EC A+ + C GSC L + + + Sbjct: 62 HGGYLLSRPPDEISIAEVVDAMEGPVGVTECSAAVGL-CAQEGSCSLRANWQHVNQVIRN 120 Query: 121 VLTQYSI 127 VL+ ++ Sbjct: 121 VLSDLTL 127 >gi|312881138|ref|ZP_07740938.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] gi|310784429|gb|EFQ24827.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] Length = 152 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +H ++ + ++ A + +AEA SE L K++Q L KAGI+ RG Sbjct: 5 LHFSEAASLAVHGVLLLAASGGEHRTVRSLAEAVGASEAHLAKVVQRLGKAGILSCTRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGGV L RPA +IT+L+V +A E C + CP G+C +L + D Sbjct: 65 RGGVFLARPAGEITLLEVYEAVEGPLDRGGCVLG-RSACPF-GACLFGGLLERVSGEVRD 122 Query: 121 VLTQYSIECLVRNRS 135 L ++E ++R Sbjct: 123 FLAATTLEDFWKSRG 137 >gi|323704140|ref|ZP_08115719.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536206|gb|EGB25978.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium xylanolyticum LX-11] Length = 149 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A++ + P + IAE +SE +L +++ L KA +V+++RG Sbjct: 1 MRLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E S ++C +C G C VL K +A Sbjct: 61 AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDIPFECSRSGGCPTKVVLEKIRDAI 120 Query: 119 FDVLTQYSIECLVRN 133 V+ +++ +V + Sbjct: 121 NKVIDSITLQDMVDD 135 >gi|226309029|ref|YP_002768989.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229491718|ref|ZP_04385539.1| transcriptional regulator [Rhodococcus erythropolis SK121] gi|226188146|dbj|BAH36250.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229321399|gb|EEN87199.1| transcriptional regulator [Rhodococcus erythropolis SK121] Length = 149 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RV+M A+ + D +A+ +S K++ L + GIV T RG Sbjct: 1 MQLTQFTDLGLRVVMRLAVLDADASPSTRDVAQQLNVSYSHATKVVTRLGELGIVTTRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + TI + + E V +C CPL G C L S LR+A AFF Sbjct: 61 RGGGLSITELGRTATIGWLARRLEGPGEVVDCEGDKP--CPLRGGCLLRSALREAQEAFF 118 Query: 120 DVLTQYSIECLVRNRS 135 L +IE ++R S Sbjct: 119 VSLDAVTIEDVIRQPS 134 >gi|238918376|ref|YP_002931890.1| transcriptional repressor NsrR [Edwardsiella ictaluri 93-146] gi|238867944|gb|ACR67655.1| HTH-type transcriptional regulator NsrR [Edwardsiella ictaluri 93-146] Length = 124 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 8/117 (6%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I+Q+ +S + KI+ L +AG V VRG+ GG+RL RPA +I I DVV+ E Sbjct: 12 ITQVTAVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGDVVRELEPLT 71 Query: 87 FV--AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V ++ F C + +C L VLR+A +AF L Q ++ L+ + + K+ Sbjct: 72 LVNCSQAF------CHITPACRLKQVLRRATDAFLTELDQCTLADLIEHNPPLYKLL 122 >gi|313895892|ref|ZP_07829446.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp. oral taxon 137 str. F0430] gi|320530715|ref|ZP_08031759.1| Rrf2 family protein [Selenomonas artemidis F0399] gi|312975317|gb|EFR40778.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137002|gb|EFW28940.1| Rrf2 family protein [Selenomonas artemidis F0399] Length = 147 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+H + I IA++ ISE +L +++ PL +AG+VE+VRG Sbjct: 1 MKLSTKGRYSVTALYELALHYGEGVVPIKTIAKSQGISENYLEQLMLPLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-----CPLVGSCGLTSVLRKA 114 +GG L RP ++TI +++ A E + +C + +D C G+C + + Sbjct: 61 AQGGYTLSRPPAEVTIGEIITAVEGPIALVDCLLT-DVDAGDQSCVHAGACATRQIWEEV 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A VL S+ L+R Sbjct: 120 CAAINSVLNNISLAHLLRG 138 >gi|254421110|ref|ZP_05034834.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] gi|196187287|gb|EDX82263.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] Length = 146 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ R+ Y +R +++ A + P I +IAEA FL IL L + ++ + RGR Sbjct: 2 LSNRSRYALRAMIHLAGLPGGGPATIGEIAEAATAPRKFLEAILLDLRRQNLLVSKRGRT 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSCGLTSVLRKALNA 117 GG L PA+ I+ DV++A E +A C + +H CP V +C L VL+ +A Sbjct: 62 GGYALAAPAETISFADVIRALEGPLALAPCASRTAHGPCETCPDVETCPLQPVLQDGRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 V S+ N S I + Sbjct: 122 VAAVFEARSLLQAASNPSPIDPV 144 >gi|78045031|ref|YP_361013.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997146|gb|ABB16045.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 148 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 5/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ + A+H + P IS+IA ISE +L ++ L KAG++++VRG Sbjct: 1 MRLSTRGHYGLKAIYDLALHYGEGPVPISEIARRQMISEPYLEQLFSVLRKAGLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSC---GLTSVLRKAL 115 +GG L R ++IT+ +VV+ E EC + + K C +C + + +R AL Sbjct: 61 AQGGYLLNRLPEEITVGEVVRVLEGPIAPVECVSENVKEACDQADACISRVVWAKVRDAL 120 Query: 116 NAFFDVLT 123 N D +T Sbjct: 121 NKVLDSIT 128 >gi|149908898|ref|ZP_01897558.1| Rrf2 family protein [Moritella sp. PE36] gi|149808172|gb|EDM68113.1| Rrf2 family protein [Moritella sp. PE36] Length = 148 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 4/130 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T TD+GIR LMY + + + +++AE S + K++ L +E+ RG+ Sbjct: 7 ITTYTDFGIRTLMYLSTLPKGQRSSSAEVAEVYQASRNHIAKVIAHLSSLNYIESSRGKN 66 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG+ L + A +I I +V+A E + + F ++ D LV + L ++L+ + AF Sbjct: 67 GGIWLAKSASEINIGQLVRALENNL---KGFDNNTQDSELVPTYQLKNLLQTGIEAFLKT 123 Query: 122 LTQYSIECLV 131 L QYS+ L+ Sbjct: 124 LDQYSLADLL 133 >gi|283835886|ref|ZP_06355627.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae ATCC 29220] gi|291068057|gb|EFE06166.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae ATCC 29220] Length = 167 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 13/138 (9%) Query: 8 DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +YGI LM C + + R + +IAE + +L KI L KAG+V ++ G+ GG Sbjct: 9 EYGIHSLM-CMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115 +L +PA+ IT+LDVV A + + EC F + G CG+ SV+ A Sbjct: 68 QLVKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPEWACEGICGVRSVMDMAQ 127 Query: 116 NAFFDVLTQYSIECLVRN 133 + L Q++I L R Sbjct: 128 QRMEEALGQHTILDLARK 145 >gi|329115226|ref|ZP_08243981.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] gi|326695669|gb|EGE47355.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] Length = 169 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H + I +IA ISE L KI+ L + G V+T+RGR Sbjct: 13 MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFVDTLRGR 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKAL 115 GG+ L R + I I DVV+ TE+ + C + +C L +C L L +AL Sbjct: 73 GGGLMLGRAPEDIRIGDVVRHTEDDMALVSCMSPSPGVPGSAECLLARACHLRGALGEAL 132 Query: 116 NAFFDVLTQYSI 127 +AF VL ++ Sbjct: 133 DAFMAVLDSRTL 144 >gi|46906881|ref|YP_013270.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091594|ref|ZP_00229390.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|224498715|ref|ZP_03667064.1| Rrf2 family protein [Listeria monocytogenes Finland 1988] gi|226223260|ref|YP_002757367.1| hypothetical protein Lm4b_00657 [Listeria monocytogenes Clip81459] gi|254824091|ref|ZP_05229092.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|254828298|ref|ZP_05232985.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|254932089|ref|ZP_05265448.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|254994106|ref|ZP_05276296.1| hypothetical protein LmonocytoFSL_14839 [Listeria monocytogenes FSL J2-064] gi|255023288|ref|ZP_05295274.1| hypothetical protein LmonocyFSL_07190 [Listeria monocytogenes FSL J1-208] gi|255520380|ref|ZP_05387617.1| hypothetical protein LmonocFSL_03972 [Listeria monocytogenes FSL J1-175] gi|290892831|ref|ZP_06555822.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|46880147|gb|AAT03447.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019913|gb|EAL10650.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|225875722|emb|CAS04425.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600690|gb|EEW14015.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|290557643|gb|EFD91166.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|293583644|gb|EFF95676.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|293593322|gb|EFG01083.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|328467204|gb|EGF38284.1| hypothetical protein LM1816_00045 [Listeria monocytogenes 1816] gi|328475713|gb|EGF46459.1| hypothetical protein LM220_02615 [Listeria monocytogenes 220] gi|332311056|gb|EGJ24151.1| Rrf2 family transcriptional regulator [Listeria monocytogenes str. Scott A] Length = 138 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG +E+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|302672152|ref|YP_003832112.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396625|gb|ADL35530.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus B316] Length = 135 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+RV+ A H N + IA I+ +L +I+ L KAG +E++RG Sbjct: 1 MRISTKGRYGLRVMTDLAAHYNGEYISLKDIAVRLGITVKYLEQIVTALNKAGYLESMRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + + + D+++ E +F EC A +CPL SC + + + Sbjct: 61 TNGGHRLAKDPSEYVVGDILRVMEGNFSPVECAAEGMSECPLSDSCASLNFWKGLDDVVN 120 Query: 120 DVLTQYSIECLVRNR 134 + Y+++ LV+ + Sbjct: 121 QYIDSYTLDQLVKQK 135 >gi|115376145|ref|ZP_01463389.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca DW4/3-1] gi|115366868|gb|EAU65859.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca DW4/3-1] Length = 264 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YGI L++ ND P +AE IS FL KI L KAGIV G R Sbjct: 90 HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 149 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL + + I+ L++V A E + +C F G C + +V+ Sbjct: 150 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 209 Query: 113 KALNAFFDVLTQYSI 127 +A + + L + S+ Sbjct: 210 RAEKSMRETLAKESL 224 >gi|171910736|ref|ZP_02926206.1| RfF2 family protein [Verrucomicrobium spinosum DSM 4136] Length = 195 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57 MHLTK+ +Y +R L+ I +S +AE + F+ ILQ L AG VE+ Sbjct: 1 MHLTKKGEYALRTLIRLGIAQRQGKDVVSVSNLAEGENLPFKFIENILQELRLAGYVESK 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKA 114 RG+ GG RL +P ITI +VV+ + C + + CP CGL ++ Sbjct: 61 RGKEGGCRLAKPQVDITIGEVVRLIDGRLAPIGCASETDYERCTCPDEHHCGLRMLMIDV 120 Query: 115 LNAFFDVLTQYSIECLV 131 NA +L +Y++ +V Sbjct: 121 RNAIAQILDRYTLADVV 137 >gi|255528018|ref|ZP_05394855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296185461|ref|ZP_06853871.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] gi|255508287|gb|EET84690.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296050295|gb|EFG89719.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] Length = 151 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+H + P+ I IAE ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGQYGVKAMVDLAVHYGEGPSSIKSIAERQNISEYYLEQLFSPLRKANLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +T+ ++++ E +++C H + C T +L + Sbjct: 61 AQGGYVLEREPKDMTVFEIMEVLEGPVEISKCIDEHNENSCGNMDCCATRLLWSRIKESI 120 Query: 120 D-VLTQYSIECLVRNRSSIK 138 D V+ ++E +V + +K Sbjct: 121 DSVMKATTLEDMVEDYKKMK 140 >gi|268592506|ref|ZP_06126727.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri DSM 1131] gi|291311912|gb|EFE52365.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri DSM 1131] Length = 180 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 10/136 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H+T +YGI L++ + + ++AE IS FL KIL L KAGIV + G R Sbjct: 3 HITVSVEYGIHCLLWFVDNPERSLSSRELAELQGISPSFLAKILPRLEKAGIVSSNEGIR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKI-DCPLVGSCGLTSVL 111 GG RL P ++IT L ++ A E + EC F + + + G+C + V+ Sbjct: 63 GGYRLALPPEKITFLSIIDAIEGYKPLFECQEIRRRCAVFEENGLPQWAISGTCSVHKVI 122 Query: 112 RKALNAFFDVLTQYSI 127 +A NA DVL ++ Sbjct: 123 LQAENAMRDVLANQTL 138 >gi|303246358|ref|ZP_07332638.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302492421|gb|EFL52293.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 152 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +Y IR ++Y A+H D IS +IAEA I FL K+ Q L +AGI+ + Sbjct: 1 MRLTRAGEYAIRCVLYLAMHQDR-TLISRKEIAEAMEIPAQFLGKVAQSLSRAGIIAIRQ 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117 G +GG + + + +++L VV+A + F+ +C H+ D C C + V A Sbjct: 60 GAQGGYEMAKAPEAVSLLSVVEAIDGEIFLNDCI--HRPDTCTRQTICSVHRVWETARRQ 117 Query: 118 FFDVLTQYSIECLVRN 133 + L ++ L R Sbjct: 118 LRETLAGTTLAALARE 133 >gi|220934658|ref|YP_002513557.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. HL-EbGR7] gi|219995968|gb|ACL72570.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. HL-EbGR7] Length = 158 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + +M AIH+ P ++ I++ IS +L ++ L K G+VE VRG Sbjct: 1 MKLSTKGRYAVTAMMDLAIHDRIGPVTLADISQCQGISLSYLEQLFAKLRKHGLVEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 GG RL +PAD+IT+ +++ A +E+ V C + DC C LT L K L+ Sbjct: 61 PGGGYRLAKPADRITVANIITAVDENVDVTRCQGNE--DCQQGDRC-LTHELWKDLSQQL 117 Query: 117 -AFFDVLT 123 F D +T Sbjct: 118 YGFLDGIT 125 >gi|103486168|ref|YP_615729.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976245|gb|ABF52396.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis alaskensis RB2256] Length = 166 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY + VLM A P + +AE I K++ L +AG++ R Sbjct: 1 MRLSNFADYAV-VLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 G GGVRL RPA I++ D+++A E + C A + DC L GSC Sbjct: 60 GSGGGVRLARPAAAISVADIIEAVEGPIALTSCVAEGRHDCSLEGSC 106 >gi|319948404|ref|ZP_08022545.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4] gi|319437958|gb|EFV92937.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4] Length = 152 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M L++ +D +R LM A+ ++ R++ IAE+ S + KI+ LV+ G+ E+ R Sbjct: 1 MQLSRSSDLALRALMRLAVADEREERMTAAVIAESVEASVSHVAKIVSRLVELGLAESRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ + ++ +++ E V +C CPL G+CGL L A AF Sbjct: 61 GRGGGLVITELGRHESVGRLLRRLEGPGEVVQC--EGPTPCPLAGNCGLRRALVDAREAF 118 Query: 119 FDVLTQYSIECLVRN 133 F L +++ +VR Sbjct: 119 FATLDPLTVDGIVRT 133 >gi|308071586|ref|YP_003873191.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305860865|gb|ADM72653.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 132 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ TDY + ++Y + + D P + +A +S +L K++ LVKAG++++V G Sbjct: 1 MKYSQATDYALHAMLYLVMSDSDKPIGVQMLAAKLNVSRTYLSKMMAQLVKAGLIQSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG RL + + I+ LDV++A E + + EC H C Sbjct: 61 VNGGYRLRQRGEDISFLDVIQAIEGTASLFECSLDHGTKC 100 >gi|254853166|ref|ZP_05242514.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|300764439|ref|ZP_07074432.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] gi|258606518|gb|EEW19126.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|300514793|gb|EFK41847.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG +E+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLVGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|34498942|ref|NP_903157.1| hypothetical protein CV_3487 [Chromobacterium violaceum ATCC 12472] gi|34104791|gb|AAQ61148.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 146 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT+ TD G+RVLMY + P + I +IAE +S L K++ + + G + T Sbjct: 1 MQLTRFTDLGLRVLMY--LTGQQPGQLATIPEIAERFEVSRNHLVKVVHFMAQQGWLVTS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG+ GG+ L RP + + +VV+ E + +C + C L C L L +AL A Sbjct: 59 RGKGGGMTLARPPEHYRLGEVVRMLEGKPQLIDCV---EPPCALSRGCLLKGALDEALAA 115 Query: 118 FFDVLTQYSIECLV 131 FF L Y++ +V Sbjct: 116 FFLSLDGYTLRDIV 129 >gi|258404994|ref|YP_003197736.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] gi|257797221|gb|ACV68158.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] Length = 153 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R+ YG+ +L AIH + P IS+IA +S + KI++ L + G + + G Sbjct: 1 MKFSTRSRYGLHLLRDIAIHAESGPVSISEIASRHSMSLKYTEKIIRQLRQGGWLSSTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L R A + + ++V+ E+S + +C + CP G C S+ ++AL A + Sbjct: 61 ARGGYQLTRQASAMPLGEIVRYLEDSPLLLDC-QKLRPGCPRCGVCLTRSLWQEALEAMY 119 Query: 120 DVLTQYSIECLVRN 133 L +++ LVR+ Sbjct: 120 AKLDSFTLADLVRD 133 >gi|86741718|ref|YP_482118.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3] gi|86568580|gb|ABD12389.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3] Length = 143 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT+ TD +R LM A D + +++A + + KI+Q L + +V TVRGR Sbjct: 1 MHLTQSTDLALRALMLTATREDRLT-VRDLSKALDVPLTHMAKIVQRLQRLDLVVTVRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L A Q+T+ +V+A E + C CPL +C L +LR+A F Sbjct: 60 TGGVLLAPGATQVTVGHIVRALEGTDEFVSCDGP---PCPLRCACRLRPLLRRAQENFLV 116 Query: 121 VLTQYSI 127 L + ++ Sbjct: 117 TLDEVTL 123 >gi|298207782|ref|YP_003715961.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter atlanticus HTCC2559] gi|83850420|gb|EAP88288.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter atlanticus HTCC2559] Length = 136 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L + A N P +I+ I+EA IS+ FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALTHLARQENQAPVQIATISEAENISQKFLESILLTLKKNGILSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + A I++++V++ E + C + + DCP +C + ++ + ++ Sbjct: 62 GGYYLLKEAKDISMVNVMRVLEGPIAMVPCVSLNYYEKCDDCPDEHACSVHKLMIEVRDS 121 Query: 118 FFDVLTQYSIECLV 131 D+ S+ L+ Sbjct: 122 TLDIFNNKSLADLI 135 >gi|111021140|ref|YP_704112.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820670|gb|ABG95954.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 165 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T + DY +R L+ A P++ +A++ I FL +L L + G+V + RG Sbjct: 1 MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA+ ITI DV++ E Sbjct: 61 DGGYWLARPAEDITIADVIRTVE 83 >gi|226363500|ref|YP_002781282.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226241989|dbj|BAH52337.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 165 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T + DY +R L+ A P++ +A++ I FL +L L + G+V + RG Sbjct: 1 MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA+ ITI DV++ E Sbjct: 61 DGGYWLARPAEDITIADVIRTVE 83 >gi|222100083|ref|YP_002534651.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] gi|221572474|gb|ACM23286.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] Length = 143 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K Y +R+LM ++ N P S++AE I+ F K+L L ++G+V +++G+ GG Sbjct: 10 KHVRYALRLLMRLSLENR-PMSSSELAEKEHITRSFTLKVLHYLKRSGLVSSIKGKNGGF 68 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 L R AD+I+ LD+++A E+ + +C Sbjct: 69 VLARSADEISFLDIIRAFEKDLVIVDC 95 >gi|313610249|gb|EFR85521.1| putative transcriptional regulator [Listeria monocytogenes FSL F2-208] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG +E+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASGISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|3659616|gb|AAC61685.1| CDG1D [Gluconacetobacter xylinus] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR L+Y + I +IA IS+ L K++ L G++ RGR Sbjct: 1 MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAATHRISQNHLVKVVNRLSSNGVILARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L QI I D+++ E + C + C L +C L + K++NAF Sbjct: 61 SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLQGLFAKSVNAFM 120 Query: 120 DVLTQYSIE 128 VL + ++ Sbjct: 121 SVLDRITLH 129 >gi|295108297|emb|CBL22250.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum A2-162] Length = 144 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ +H + I IA IS+ +L +++ L KAG+VE+ RG Sbjct: 1 MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL RPA +I++ DV++ E S A+C Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQC 92 >gi|225165991|ref|ZP_03727744.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium TAV2] gi|224799763|gb|EEG18239.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium TAV2] Length = 200 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57 M L+K+ +Y +R L+ I + + Q+AE I FL +I+Q L +G+V + Sbjct: 1 MKLSKKGEYALRALIDLGIAAEVDRDLVQVAELADKELIPIKFLEQIMQELKTSGLVISQ 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKA 114 RG+ GG RL RPA +I+I V++ + C A K CP CGL ++ Sbjct: 61 RGKFGGYRLSRPASEISIGSVIRFIDGPLAPIGCVSQTAYEKCSCPDETHCGLRMLMLDV 120 Query: 115 LNAFFDVLTQYSIECLV 131 NA +L +YS+ +V Sbjct: 121 RNAIAGILDRYSLADVV 137 >gi|317154436|ref|YP_004122484.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis Aspo-2] gi|316944687|gb|ADU63738.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis Aspo-2] Length = 148 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 2/128 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+ + A H P RI IAE +S +L K+++ L G V + RG Sbjct: 1 MRLTTRSRYGTRMALDIAQHCGPGPVRIQDIAERQGVSTKYLEKLIRRLKDGGYVVSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L RPA +I I ++V+ E + EC K DC C + + +A A + Sbjct: 61 PRGGHTLARPASEILIGELVRVLEGDDSLVECRTGKK-DCQRRSVCLTSRLWVEAAEAMY 119 Query: 120 DVLTQYSI 127 L +++ Sbjct: 120 QRLNSFTL 127 >gi|217965274|ref|YP_002350952.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|217334544|gb|ACK40338.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|307570170|emb|CAR83349.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG +E+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATRQNVSPTYLSKVLTMLVKAGFIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|297568160|ref|YP_003689504.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio alkaliphilus AHT2] gi|296924075|gb|ADH84885.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio alkaliphilus AHT2] Length = 130 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 48/83 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IR + A H I IA I FL KILQ L +A IVE+ RG Sbjct: 1 MQITRATDYAIRCVYCLARHPGELWMIDDIAREMEIPNSFLAKILQKLARAQIVESQRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 RGG RL R ++I++ DVV ATE Sbjct: 61 RGGFRLARAPEEISLHDVVVATE 83 >gi|288940602|ref|YP_003442842.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895974|gb|ADC61810.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum DSM 180] Length = 160 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH P ++ IA+ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHQGQGPIALADIAQRQGISLSYLEQLFAKLRKRGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I + +V+ A +ES C +H +C G C + + + Sbjct: 61 PGGGYNLARKPVEIHVAEVIAAVDESVDTTRCGGAH--NCQNNGPCLTHDLWHDLSDRIY 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L Q ++ LV R S+ + Sbjct: 119 DYLNQIDLQTLVDQRDSLGQ 138 >gi|87310930|ref|ZP_01093056.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM 3645] gi|87286445|gb|EAQ78353.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM 3645] Length = 138 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LM+ A +D N ++ +A+ IS + K++ L K G V ++RG Sbjct: 1 MKLTTQTDYALRTLMFLATRSDRAN-VANVAQLFGISVHHVAKVVNSLAKYGYVRSIRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LNA 117 GG+ L R +I + +VV+ E S + +C + I C + C L VL +A A Sbjct: 60 GGGIELARQPREIRLGEVVERFEGSTHLLDCIDTEDI-CAIQSFCKLKGVLAEAERVQRA 118 Query: 118 FFDVLT 123 + D +T Sbjct: 119 YLDSVT 124 >gi|313669379|ref|YP_004049806.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313156576|gb|ADR35253.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 137 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 51/92 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH +K +Y IRVL Y H++ + ++ + + + +L K++ LVK G+V RGR Sbjct: 1 MHFSKTAEYAIRVLSYLYRHHESSHSVNVLHQELVLPYKYLTKMVTDLVKKGLVNASRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG+ L + ADQI + D+++A E C Sbjct: 61 EGGISLAKNADQIRLRDILEAIGEPLEHERCI 92 >gi|304316708|ref|YP_003851853.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778210|gb|ADL68769.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 149 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A++ + P + IAE +SE +L +++ L KA +V+++RG Sbjct: 1 MKLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E S ++C +C G C V+ K +A Sbjct: 61 AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDMPFECSRSGGCPTKLVMEKIRDAI 120 Query: 119 FDVLTQYSIECLVRN 133 V+ +++ +V + Sbjct: 121 NKVIDSITLQDMVDD 135 >gi|193216387|ref|YP_001997586.1| BadM/Rrf2 family transcriptional regulator [Chloroherpeton thalassium ATCC 35110] gi|193089864|gb|ACF15139.1| transcriptional regulator, BadM/Rrf2 family [Chloroherpeton thalassium ATCC 35110] Length = 132 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + +TK+ +YG+ + Y A+ N +I+E I L K LQ L KAG++ +V+G Sbjct: 2 LKVTKKFEYGLIAVRYIAMTSNGEVATAKEISERMGIPYELLAKTLQRLTKAGVITSVQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L RP QIT+ ++ +A E + EC A+ C L +C + L F Sbjct: 62 VKGGYKLSRPPKQITLGEIAEAIEGPLNLTECQATQD-TCHLYSTCAIKKSLVHIQQRFQ 120 Query: 120 DVLTQYSIE 128 + Q +++ Sbjct: 121 HIFDQATVD 129 >gi|253582245|ref|ZP_04859468.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251835784|gb|EES64322.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 136 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 7/128 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+LMY I+ D NRI ++I+E I LF +IL+ L KA +V Sbjct: 1 MRLKNEIEYVFRILMYLTINGD--NRIIPSNEISEKEEIPHLFSLRILKKLEKADLVLIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALN 116 +G +GG +L + + +IT+ D +++ E S + +C S + C L G+CG+ +L+ + Sbjct: 59 KGAKGGYKLKKDSREITLKDAIESIEGSICIKDCLESPE-SCTLRKGNCGVHRILKDIES 117 Query: 117 AFFDVLTQ 124 F L Sbjct: 118 QFISRLQN 125 >gi|77919328|ref|YP_357143.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545411|gb|ABA88973.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 155 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + + P +I I+ IS +L +I Q KAGI+++ +G Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGNQPAQIKDISRRQDISPRYLEQIFQSFKKAGILKSKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKA-- 114 +GG L R DQIT+ +V+A E + C K C + G C +V +A Sbjct: 61 PQGGYFLTRKPDQITVRQIVEAAEGDTLLVACACETPKGKGCCTMNGQCVTQTVWFEATE 120 Query: 115 -LNAFFDVLT 123 LN F D LT Sbjct: 121 HLNTFLDSLT 130 >gi|15613219|ref|NP_241522.1| hypothetical protein BH0656 [Bacillus halodurans C-125] gi|4512355|dbj|BAA75320.1| similar to B.subtilis ywgB gene(27%-identity) [Bacillus halodurans] gi|10173270|dbj|BAB04375.1| BH0656 [Bacillus halodurans C-125] Length = 132 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A P++ + Q+AE +S +L KIL L KAG++E+V Sbjct: 1 MKYSKATNYALHTVLFLAAAT--PSKFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G GG RL R ++I+ LDV+ A E + + +C +H +C Sbjct: 59 SGANGGYRLKRDWEEISFLDVIHAIEGTASLFDCDLNHGSEC 100 >gi|331000240|ref|ZP_08323924.1| HTH-type transcriptional regulator IscR [Parasutterella excrementihominis YIT 11859] gi|329572406|gb|EGG54059.1| HTH-type transcriptional regulator IscR [Parasutterella excrementihominis YIT 11859] Length = 151 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 80/147 (54%), Gaps = 10/147 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT + + + ++ A+H+ P I+ I + +S +L +I L +AG++E V Sbjct: 1 MKLTTKGRFAVTAMLDIALHD--PEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG RL +PADQIT++D+++A ++ A C + + C G C +T L ++LN Sbjct: 59 RGPAGGYRLAKPADQITVIDILEAVDDPLEKASCDKNRAV-CDGEGEC-ITFDLWESLN- 115 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 + + ++ ++N + KK+ + G Sbjct: 116 --EEIRKFLKGISLKNLADKKKLKDQG 140 >gi|83592507|ref|YP_426259.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575421|gb|ABC21972.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 148 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ L+Y A H D P I++IAE+ IS+ FL IL L AG+V + +GR Sbjct: 2 LSNKAKYGLKALLYLAEHGDGTPILIAEIAESEDISKKFLDAILLELRNAGLVGSKKGRG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC---GLTSVLRKA 114 GG L +P DQI I V++ + C + DC V C GL +R A Sbjct: 62 GGYFLAKPTDQIFIGTVIRVLDGPIAPIPCASRTAYRPCDDCGSVQECAIRGLMLDVRDA 121 Query: 115 LNAFFDVLT 123 + A D T Sbjct: 122 MAAILDSTT 130 >gi|253996434|ref|YP_003048498.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983113|gb|ACT47971.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis JLW8] Length = 146 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +TK TD +RVLMY D I++IA+ + L K++ L K V RG Sbjct: 1 MQITKFTDLSLRVLMYLTQEVGDSMVTINEIAQQFDVPRNHLIKVVARLNKLKWVSATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ++ + +V++ E + C + C L G C L +L L +F+ Sbjct: 61 RSGGLRLGIQPSELKLGNVLRELENKTSLINC---SEPPCVLSGQCNLKEILDHGLQSFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 + + +Y+++ +V ++ Sbjct: 118 EEMNKYTLQSIVDQKTQ 134 >gi|160932651|ref|ZP_02080041.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753] gi|156868610|gb|EDO61982.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753] Length = 145 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y +RV++ A + P + +IAE ISE +L I++ LVK G+V + Sbjct: 1 MMVSTKGRYALRVMVELAARGLEEFVP--LKEIAEHQEISEKYLEAIMKSLVKEGLVTGL 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKA 114 RG+ GG RL +P Q T+ ++K TE S C + CP C + L + Sbjct: 59 RGKGGGYRLSKPPAQYTVGSILKVTEGSLAPVACLGQNAAPCPRAERCATYPMWKRLSQL 118 Query: 115 LNAFFDVLT 123 ++ FF+ +T Sbjct: 119 IDDFFEGIT 127 >gi|145223660|ref|YP_001134338.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315443986|ref|YP_004076865.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Mycobacterium sp. Spyr1] gi|145216146|gb|ABP45550.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum PYR-GCK] gi|315262289|gb|ADT99030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. Spyr1] Length = 148 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M + R++ +IA + SE + K + LV+ G+VE R Sbjct: 1 MQLTRFTDLGLRAMMLLSAGEFADKRVTTGRIAASAGASENHIAKAVSRLVELGLVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V C + CPL+ C L L +A AF Sbjct: 61 GRIGGLSLTEAGRTASVGWLVRELEGDREVVNC--QGETACPLIAGCRLRHALARAKEAF 118 Query: 119 FDVLTQYSIECLVRN 133 + L Y++ L R+ Sbjct: 119 YAELDNYTVSDLARS 133 >gi|260887774|ref|ZP_05899037.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas sputigena ATCC 35185] gi|330838672|ref|YP_004413252.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] gi|260862450|gb|EEX76950.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas sputigena ATCC 35185] gi|329746436|gb|AEB99792.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] Length = 143 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R++M A++ + P RI IA ISE +L +I+ L KAG V++ RG Sbjct: 1 MKISTRGRYALRLMMDIAMNGQNEPVRIKDIARRQEISEKYLEQIVSVLNKAGFVKSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R + T ++ E S C + DCP C + +K A Sbjct: 61 PQGGYRLMRAPQEYTAGSILCLIEGSLAPVACMDMEENDCPRHERCATLFLWQKLHEAMK 120 Query: 120 DVLTQYSIECLV 131 DV+ S+ L+ Sbjct: 121 DVIENVSLSDLI 132 >gi|157149110|ref|YP_001456429.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895] gi|157086315|gb|ABV15993.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895] Length = 167 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 8 DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +YGI LM C + + R + +IA+ + +L KI L KAG+V ++ G+ GG Sbjct: 9 EYGIHSLM-CMVDSKGDARDMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115 +L RPA+ IT+LDVV A + + EC F G CG+ SV+ A Sbjct: 68 QLARPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPAWACEGICGVRSVMDMAQ 127 Query: 116 NAFFDVLTQYSIECLVRN 133 + L Q++I L R Sbjct: 128 QRMEEALGQHTILDLARK 145 >gi|163802753|ref|ZP_02196643.1| hypothetical protein 1103602000569_AND4_12699 [Vibrio sp. AND4] gi|159173460|gb|EDP58282.1| hypothetical protein AND4_12699 [Vibrio sp. AND4] Length = 141 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + +IT+ VV+ E + C C + +C L L +A AF Sbjct: 61 KNGGIRLLKAPQEITVGGVVRDL-EPLDLVNCSVEF---CHITPACRLKEKLAQAKMAFM 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L +IE L+R+ S + Sbjct: 117 AELDGCTIEELLRDNSEL 134 >gi|319942818|ref|ZP_08017119.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319803585|gb|EFW00546.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 161 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 7/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT + + + ++ A+ +D P I+Q+AE IS +L +I L +AG+VE+ Sbjct: 1 MKLTTKGRFAVTAMVDIAMRARESDAPVPIAQVAERQKISLAYLEQIFCRLRRAGLVEST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L PA QITI +V A +E+ +C L G+ LT L + LN+ Sbjct: 61 RGPAGGYKLSEPASQITIDRIVLAVDENMDTTQCRGEGTC---LGGAACLTHHLWEELNS 117 Query: 118 FFD-VLTQYSIECLV 131 + L S+ECL+ Sbjct: 118 VIESFLASRSLECLI 132 >gi|254519288|ref|ZP_05131344.1| rrf2 family protein [Clostridium sp. 7_2_43FAA] gi|226913037|gb|EEH98238.1| rrf2 family protein [Clostridium sp. 7_2_43FAA] Length = 150 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+H D P I I++ ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAMHYGDAPVSIKTISQRQNISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L IT+ DV+ E +AEC +C + C + K N+ Sbjct: 61 AQGGYVLNYAPKDITVADVMNVLEGPVEIAECIEG--TECDNIDFCATRLLWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V+ +++ +V + +K Sbjct: 119 EVMKNITLQDIVDDYVRMK 137 >gi|194291062|ref|YP_002006969.1| hth transcriptional regulator; upf0074 [Cupriavidus taiwanensis LMG 19424] gi|193224897|emb|CAQ70908.1| putative HTH transcriptional regulator; UPF0074 [Cupriavidus taiwanensis LMG 19424] Length = 150 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY A + P I+++ + IS L K+ L K G V RG Sbjct: 1 MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWVSATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L A+++TI +++ E V +C C L G+C L L A AF+ Sbjct: 61 RHGGLQLGPGAERLTIGTILRELEGHRPVIDC---DNPPCALHGNCHLKRALDVAEQAFY 117 Query: 120 ---------DVLTQYSIECLVR 132 DV ++ E ++R Sbjct: 118 RALDDVTLADVSGSHTAESIIR 139 >gi|241668595|ref|ZP_04756173.1| putative transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 140 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR Sbjct: 1 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F Sbjct: 61 FGGVSISQATYNINLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119 Query: 121 VLTQY 125 L+ Y Sbjct: 120 RLSDY 124 >gi|303257496|ref|ZP_07343508.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderiales bacterium 1_1_47] gi|302859466|gb|EFL82545.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderiales bacterium 1_1_47] Length = 151 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 7/119 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT + + + ++ A+H+ P I+ I + +S +L +I L +AG++E V Sbjct: 1 MKLTTKGRFAVTAMLDIALHD--PEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG GG RL +PADQIT++D+++A ++ A C + + C G C +T L ++LN Sbjct: 59 RGPAGGYRLAKPADQITVIDILEAVDDPLEKASCDKNRAV-CDGEGEC-ITFDLWESLN 115 >gi|220916472|ref|YP_002491776.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954326|gb|ACL64710.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] Length = 159 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG Sbjct: 5 LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64 Query: 60 RRGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R PAD I+ LDV+++ E + C C +C + SV R Sbjct: 65 PHGGYALARMPAD-ISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERM 122 Query: 119 FDVLTQYSIECL 130 DV Q + L Sbjct: 123 LDVYRQAKLSEL 134 >gi|303238938|ref|ZP_07325469.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] gi|302593571|gb|EFL63288.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] Length = 150 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++ AIH+ + + I+E C +SE ++ +I L +AGIV+++RG Sbjct: 1 MKISTKGRYGLEAIVDLAIHSAEGHVNLKSISERCGMSEAYILQIFLILRRAGIVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L + +IT+ DV+ A E C + + C GSC ++A Sbjct: 61 AQGGYVLAKEPSEITVGDVLTALEGPLAPVACVVTEAEHTCERYGSCATRGFWESIMSAL 120 Query: 119 FDVLTQYSIECLVR--NRSSIKK 139 DV +I LV N S+ + Sbjct: 121 NDVANSITIADLVECYNESAFQS 143 >gi|302536831|ref|ZP_07289173.1| transcriptional regulator [Streptomyces sp. C] gi|302445726|gb|EFL17542.1| transcriptional regulator [Streptomyces sp. C] Length = 152 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ + D P ++A + K++ L G+VE RG Sbjct: 4 MRLTRFTDLALRVLMRLAVEDTDLPT-TREVAATMEVPYTHTAKVVARLQHLGLVEARRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ++ VV+ E + V +C + CPL G+C L LR+A AFF Sbjct: 63 RGGGLALTAAGRTASVGGVVRELEGAGDVVDCDGASP--CPLRGACVLRGALRRAQEAFF 120 Query: 120 DVLTQYSIECLV 131 L ++ LV Sbjct: 121 AALDPLTVNELV 132 >gi|116872023|ref|YP_848804.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740901|emb|CAK20021.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 138 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKAG VE+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ A Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESKP---HCLIGEVMNNAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|226326637|ref|ZP_03802155.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198] gi|225204858|gb|EEG87212.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198] Length = 126 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I+++ + +S + KI+ L G VE +RG+ GG+RL +PA I + +VV+A E Sbjct: 12 ITEVTQVYGVSRNHMVKIINQLSHLGFVEAIRGKNGGIRLGKPATDIIVGEVVRAL-EPL 70 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 + C A C + +C L VL +A+ F L ++++ LV N SS+ K+ Sbjct: 71 SLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSSLYKLL 122 >gi|126347965|emb|CAJ89685.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 172 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + LTK TD +R +M A+ D P ++AEA + K + L G+VE R Sbjct: 25 VRLTKFTDLALRSVMRLAVVRDGDDPLTTREVAEAVGVPYTHAAKAITRLRHLGVVEARR 84 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L P + ++ +V+ E V C CPL G+C L LR+A AF Sbjct: 85 GRGGGLTLTDPGRRASVGRLVRELEGDGEVVACEGDSP--CPLRGACRLRGALREAQEAF 142 Query: 119 FDVLTQYSIECLV 131 + L ++ LV Sbjct: 143 YAALDPLTVTDLV 155 >gi|85713395|ref|ZP_01044399.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] gi|85692781|gb|EAQ30775.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] Length = 150 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 4/139 (2%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K TDYG+RVL+Y A D I+ ++ +S+ L K++ L K G+++T RG Sbjct: 1 MQLKKYTDYGLRVLIYLAAAEPDERATINDLSSVFSVSKNHLNKVVHHLGKLGLIKTWRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L A + V++ E +C C + C L ++ F+ Sbjct: 61 KGGGFSLAVDARHTRLDTVIRQLEGDEDWIDCLNP---TCKIYSVCDLKGIIHAGKEQFY 117 Query: 120 DVLTQYSIECLVRNRSSIK 138 L +Y+I LV IK Sbjct: 118 SYLAKYTIASLVERPEEIK 136 >gi|153004144|ref|YP_001378469.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027717|gb|ABS25485.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. Fw109-5] Length = 158 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ DYG+R ++Y A I + +IA + E FL KIL+ LV +V + RG Sbjct: 5 LRISRKIDYGLRAMIYLASIPQESVVPFREIARQMDVPEDFLAKILKTLVDQSLVRSTRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I+ LDV++A E + C C +C + SV R+ Sbjct: 65 PHGGYALARTPSEISFLDVIEAVEGPVALNVCLDGEDA-CGHSTACTMVSVWRQGQERML 123 Query: 120 DVLTQYSIECL 130 DV Q + L Sbjct: 124 DVYRQAKLNEL 134 >gi|302392704|ref|YP_003828524.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302204781|gb|ADL13459.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium arabaticum DSM 5501] Length = 149 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A+ + P + +IAE IS+ +L +++ L +VE+VRG Sbjct: 1 MQLSTKGRYGVRAMFDLALQQKEGPIPLKEIAERQKISDNYLEQLIAVLKNNRLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P ++I+I D+++A E +A+C C +C + + +K Sbjct: 61 AYGGYLLAKPPEEISIGDIIRALEGPIDLADCVGGRS--CEFEDNCIVELIWQKVKKEID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D+L ++E L++ ++ ++ Sbjct: 119 DILDSITLEDLLQEAANAQQ 138 >gi|210621787|ref|ZP_03292816.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275] gi|210154551|gb|EEA85557.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275] Length = 148 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 11/135 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ +DY IR++ A+ ++ I I E + E F +KI++ L K+ IVE RG Sbjct: 1 MLFTRESDYAIRIVR--ALKDEEKLTIKTICERELLPEAFAYKIIKKLAKSEIVEIKRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + +++T+ DV+ A + F V EC S C GS G+ V ++ Sbjct: 59 NGGYSLKKDLNELTLYDVIIAVDPDFAVMECIHSF---CNRNGSNGMCKVHKEL------ 109 Query: 121 VLTQYSIECLVRNRS 135 + Q +E L++ RS Sbjct: 110 IYIQNQVEMLLKRRS 124 >gi|78189265|ref|YP_379603.1| hypothetical protein Cag_1300 [Chlorobium chlorochromatii CaD3] gi|78171464|gb|ABB28560.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium chlorochromatii CaD3] Length = 186 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 + ++++ +YG+ + Y A NR+ +++E S+ FL K +Q L KAGI ++V Sbjct: 2 LQVSRKFEYGLHAITYLATKGQ--NRVVTVKELSEELGFSQEFLSKAMQSLKKAGITKSV 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G RGG RL +P +IT+ D+ ATE + +C S + C + +C + + + Sbjct: 60 QGLRGGFRLIKPITEITVADIAVATEGEPHLVQCNISAE-RCHVYATCQHKAFMNTLQHK 118 Query: 118 FFDVLTQYSIECLVRN 133 ++L +I L+ Sbjct: 119 IHELLATTTIVALLEQ 134 >gi|325265021|ref|ZP_08131748.1| Rrf2 family protein [Clostridium sp. D5] gi|324029711|gb|EGB90999.1| Rrf2 family protein [Clostridium sp. D5] Length = 152 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A H++ P I+ I++ ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQHSEADPVSITSISDRQGISERYLEQLMSMLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSC 105 GG L + ++I++ DV++A E S EC H + C SC Sbjct: 61 AGGGYVLAKDLEEISVGDVLRALEGSLEPVECSGLHPEEGCKAADSC 107 >gi|197121676|ref|YP_002133627.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Anaeromyxobacter sp. K] gi|196171525|gb|ACG72498.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. K] Length = 160 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG Sbjct: 5 LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64 Query: 60 RRGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R PAD I+ LDV+++ E + C C +C + SV R Sbjct: 65 PHGGYALARMPAD-ISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERM 122 Query: 119 FDVLTQYSIECL 130 DV Q + L Sbjct: 123 LDVYRQAKLSEL 134 >gi|254877128|ref|ZP_05249838.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843149|gb|EET21563.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 174 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR Sbjct: 35 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 94 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F Sbjct: 95 FGGVSISQATYNINLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 153 Query: 121 VLTQY 125 L+ Y Sbjct: 154 RLSDY 158 >gi|302336476|ref|YP_003801683.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] gi|301320316|gb|ADK68803.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] Length = 163 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L + +E I F I LV+AGI+E+ RG Sbjct: 1 MDISRKTDYALRMLSELVRSEGGIISVRAASEKDNIPYSFARSIQHDLVRAGIIESTRGS 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVL---RKAL 115 RGG+RL + T+ VV+A + +++ C H+ CP C + + L Sbjct: 61 RGGMRLAVDPRRTTVRQVVEAIQGPIYISSCDTVGGHEGPCPFRSECHYNPIWCEAERIL 120 Query: 116 NAFFDVLTQYSIEC 129 +FD +T Y + C Sbjct: 121 RDYFDSVTLYQVVC 134 >gi|87198220|ref|YP_495477.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133901|gb|ABD24643.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium aromaticivorans DSM 12444] Length = 146 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 12/135 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY + + A H R+S Q+A+ + + K++ L AG++++VR Sbjct: 1 MRLSSMADYAVVTMCAAARHCGQ-QRVSAQQLADETGLPAPTVQKLVSKLSSAGLLKSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVL 111 G RGG++L RPA IT+ D+V+A E +A C + DC L +C + + L Sbjct: 60 GARGGLKLARPAAAITLADIVEAVEGPIALAPCSEHGRHDCTLESACTVRPHWPAVDAAL 119 Query: 112 RKALNAFFDVLTQYS 126 R AL LTQ S Sbjct: 120 RGALAGIP--LTQLS 132 >gi|325286870|ref|YP_004262660.1| BadM/Rrf2 family transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322324|gb|ADY29789.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga lytica DSM 7489] Length = 135 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A D P I +IA+ IS+ FL IL L + G++ + +G+ Sbjct: 2 LSKKTKYGLKALTYLAQKEDRNPVPIGEIAQQNNISQKFLESILLMLRRTGVLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + DV++ E + C F DCP G+C + ++ K ++ Sbjct: 62 GGYYLIKEPSEILMTDVIRVLEGPIAMVPCVSLNFYEKCDDCPDEGTCSVHKLMLKVRDS 121 Query: 118 FFDVLTQYSIECLV 131 ++ ++ L+ Sbjct: 122 ALEIYKNTTLSNLI 135 >gi|78224182|ref|YP_385929.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195437|gb|ABB33204.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 154 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R + A ++ + P+++ I+ IS +L +I Q L +AGI+++ RG Sbjct: 1 MKLSTKSRYGLRAIFDIAYNSGNLPSQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSC 105 +GG L + ++IT+ DV+ ATE + EC K++C G+C Sbjct: 61 PQGGYCLAKKPEEITVADVLLATERDMNLVECTNKRKKKVECGFDGTC 108 >gi|326626056|gb|EGE32401.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 117 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ I I DVV+ E Sbjct: 4 ISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELEPLS 63 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 64 LV-NCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 114 >gi|260061024|ref|YP_003194104.1| hypothetical protein RB2501_05485 [Robiginitalea biformata HTCC2501] gi|88785156|gb|EAR16325.1| hypothetical protein RB2501_05485 [Robiginitalea biformata HTCC2501] Length = 143 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 3/131 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K Y I+ ++Y +H+ P +I + E +SE +L KILQ L + I+ +++GR Sbjct: 2 ISKTAKYAIKAVIYLGLHSSEPKKILTRDMYEQIHVSESYLAKILQVLSRHNIISSIKGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L T++D+V+ + +V C +C C L ++ K F Sbjct: 62 NGGFYLSEENKNHTLMDIVRVVDGGQYVESCVLGIS-NCNSENPCALHDLVGKGKTEFNR 120 Query: 121 VLTQYSIECLV 131 VL + +I+ L+ Sbjct: 121 VLEEVTIKKLI 131 >gi|302874700|ref|YP_003843333.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307690687|ref|ZP_07633133.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302577557|gb|ADL51569.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 140 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H P I I++ ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMFDLAVHYGSEPISIKSISDRQGISENYLEQLFSTLRKAELIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +IT+ D+ E V++C + C +GSCG + K N+F Sbjct: 61 AQGGYMLNKLPAEITVADIFDVLEGPIEVSDCIDENC--CSKIGSCGTRGLWIKIKNSFD 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V +++ +V + + K Sbjct: 119 EVTQSVTLQDMVDDYNKNK 137 >gi|226356822|ref|YP_002786562.1| Rff2 family transcriptional regulator [Deinococcus deserti VCD115] gi|226318812|gb|ACO46808.1| putative transcriptional regulator, Rff2 family [Deinococcus deserti VCD115] Length = 151 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++E IS+ +L +I L +AG ++++RG Sbjct: 1 MWVSTKAQYGLRALIEIGRRDGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA I+ DVV A E S C C CG ++ + A D Sbjct: 61 HGGYRLSRPAADISAYDVVTAMEGSLAPVSCVEDDHT-CDHQNVCGTQNLWHRVDAALKD 119 Query: 121 VLTQYSIECLV 131 VL ++ L+ Sbjct: 120 VLGSTTLADLI 130 >gi|54296620|ref|YP_122989.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris] gi|53750405|emb|CAH11799.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris] Length = 153 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG V++Y A H+ IA ++ + KIL+ L AG++ +VRG Sbjct: 2 LRVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA +I++ V+ A EE EC + DC L G C + R +A Sbjct: 62 SGGYRLQRPAAEISVSQVIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIET 120 Query: 121 VLTQYSIECLVR 132 L S+E L + Sbjct: 121 ALDSVSLEALAK 132 >gi|260438134|ref|ZP_05791950.1| iron-sulfur cluster assembly transcription factor IscR [Butyrivibrio crossotus DSM 2876] gi|292809459|gb|EFF68664.1| iron-sulfur cluster assembly transcription factor IscR [Butyrivibrio crossotus DSM 2876] Length = 144 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A++ ND P I +IA ISE +L +I+ L AG V ++RG Sbjct: 1 MKVSTKGRYALRLMIDIAVNSNDKPVSIKEIARRQGISEKYLEQIISILNSAGFVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + T+ +++ TE S C + + C V +C V R+ +A Sbjct: 61 AQGGYVLRKEPSEYTVGMILRLTEGSLAPVACIEDNVVQCDRVENCATIEVWRRLNDAIN 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 V+ ++ LV +++ K+ + Sbjct: 121 GVVDNITLADLVEWQNNNKENY 142 >gi|261415306|ref|YP_003248989.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371762|gb|ACX74507.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327324|gb|ADL26525.1| transcriptional regulator, Rrf2 family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 146 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + Y IRV++ A + + + + +AE +SE +L IL LVK ++E RG Sbjct: 1 MRESTKGRYAIRVIIDMAENGESEFHPLHNLAERQGLSEKYLEAILGVLVKNNVLEGARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L +PA ++T+ +++ E S EC A K C C + + Sbjct: 61 KGGGYKLAKPAAELTVWEILSVIETSISPVECVADGKNGCDRADVCPTLPMWKDLAKIIK 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D T +IE L R I + Sbjct: 121 DYFTGITIEQLARKAPKIAR 140 >gi|157147850|ref|YP_001455169.1| transcriptional repressor NsrR [Citrobacter koseri ATCC BAA-895] gi|157085055|gb|ABV14733.1| hypothetical protein CKO_03654 [Citrobacter koseri ATCC BAA-895] Length = 125 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ E +S + KI+ L +AG V +RG+ GG+RL +PA+ I I DVV+ E Sbjct: 12 ISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPANVIVIGDVVRELEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 72 LV-NCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 122 >gi|95930591|ref|ZP_01313326.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] gi|95133426|gb|EAT15090.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] Length = 151 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 7/145 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M +T+ T+Y IR ++Y + P I I + ++ FL KI QP+VKAGIV + Sbjct: 1 MVITRATEYAIRAILYMSKFP--PGEIVLKKDICQTQNVTPAFLTKIFQPMVKAGIVGSQ 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L + IT+ DV KA E+ + +C C C + ++ + Sbjct: 59 RGVGGGFYLRHKPEDITVYDVFKAQEDPLHINKCLGDENC-CERDNYCPVHGAWKEVRES 117 Query: 118 FFDVLTQYSIECLV-RNRSSIKKIF 141 L++Y+ L +++KK+ Sbjct: 118 MIQQLSEYNFARLAEEEEANLKKLM 142 >gi|242277828|ref|YP_002989957.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242120722|gb|ACS78418.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio salexigens DSM 2638] Length = 141 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y R+L+ A+ +D P + + ++E+ I+ F+ +IL+PL KAG++ +VRG Sbjct: 1 MKLSARARYATRLLLDLALRQSDTPRKTTLLSESTGITVQFIEQILRPLKKAGLIVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I+I ++V+ E + +C A I C +C V ++ Sbjct: 61 ATGGHILDKDPSTISIGEIVRIMEGGINLTDCVADESI-CARSATCKTRKVWVRSSKVLE 119 Query: 120 DVLTQYSIECLVRNRSS 136 + L SI L+ N S Sbjct: 120 EELDSISIADLMDNPDS 136 >gi|38637899|ref|NP_942873.1| hypothetical protein PHG235 [Ralstonia eutropha H16] gi|32527237|gb|AAP85987.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 148 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 6/89 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT TDY +R+L+Y A H P R+ +IA+A IS L K+ L + G + TV Sbjct: 1 MRLTTMTDYALRLLIYVARH---PERMCTNDEIAQAYGISRAHLVKVTHKLSRQGWIATV 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESF 86 RGR GG++L I + DVV++ E F Sbjct: 58 RGRGGGMQLSSGPGSINLGDVVRSVEPDF 86 >gi|209967102|ref|YP_002300017.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209960568|gb|ACJ01205.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 156 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L++R Y +R ++ A ++ RI+ IA A I FL IL L KAG++++VRGR Sbjct: 8 LSQRCKYALRAAVHLAGLSEQEGCARIADIAAAENIPHKFLEAILLDLRKAGLLKSVRGR 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116 GG RL +P + +++ D+++ E + C + ++ DC C + + KA + Sbjct: 68 DGGYRLAKPPEHVSMGDIIRVVEGTIAPIRCASRNRFEPCEDCGNPDECVIRWAMVKARD 127 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +VL + ++ R R ++ Sbjct: 128 AMAEVLDRCTLAEAARRRRTL 148 >gi|258541650|ref|YP_003187083.1| BadM/Rrf2 family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632728|dbj|BAH98703.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01] gi|256635785|dbj|BAI01754.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-03] gi|256638840|dbj|BAI04802.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-07] gi|256641894|dbj|BAI07849.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-22] gi|256644949|dbj|BAI10897.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-26] gi|256648004|dbj|BAI13945.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-32] gi|256651057|dbj|BAI16991.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654048|dbj|BAI19975.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-12] Length = 169 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H + I +IA ISE L KI+ L + G ++T+RGR Sbjct: 13 MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFIDTLRGR 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKAL 115 GG+ L R I I DVV+ TE+ + C + +C L +C L L +AL Sbjct: 73 GGGLMLGRAPQDIRIGDVVRHTEDDMALVSCMSPSPGVPGSTECLLSRACHLRGALGEAL 132 Query: 116 NAFFDVLTQYSI 127 +AF VL ++ Sbjct: 133 DAFMAVLDSRTL 144 >gi|217967652|ref|YP_002353158.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336751|gb|ACK42544.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum DSM 6724] Length = 138 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L R+ YG+R L+Y A + N +S +IAEA I +L +I++ L + G V Sbjct: 1 MKLPTRSRYGLRALIYIAKNQKEENPVSVRKIAEAEEIPLRYLERIMRILSQKGYVRAEV 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + I ILDVV+A E + +C H I C + C + + + Sbjct: 61 GAEGGYYLSMLPENIKILDVVEALEGRINLVDCL--HGIKCKRMAYCPTRPLWMEMTKSL 118 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + L +Y++ +R IK Sbjct: 119 KETLAKYTLADFLREEEKIK 138 >gi|262197356|ref|YP_003268565.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Haliangium ochraceum DSM 14365] gi|262080703|gb|ACY16672.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum DSM 14365] Length = 183 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 7/107 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVET 56 M L+ +T YG+R + A H D P +Q IA I +L +I Q L +AG+VE+ Sbjct: 1 MRLSTKTRYGVRAIFDIAYHGQDQPGVAAQAKDIARREDIPLRYLEQIFQDLKRAGLVES 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCP 100 RG RGG L R A++IT+ DVV+A + E FV E A + P Sbjct: 61 KRGPRGGYSLKRSAEEITLGDVVRALQGPIEEMFVVEDTAQNSSARP 107 >gi|89895173|ref|YP_518660.1| hypothetical protein DSY2427 [Desulfitobacterium hafniense Y51] gi|219669600|ref|YP_002460035.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|89334621|dbj|BAE84216.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539860|gb|ACL21599.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 146 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 2/146 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ ++ A+++ + P + IA+ +SE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLTAMVDLALNSGEGPISLKSIADRQGLSEHYLEQLISGLRKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L + A++I I D+++ E EC A+ + C C S+ K + Sbjct: 61 AQGGYVLGKKAEKIRIGDIIRVLEGPIAPVECEANGDPECCQKSDYCVTRSIREKVRDPI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144 DVL S+ LVR+ ++ I + G Sbjct: 121 EDVLDSISLADLVRDPQTMCTIADPG 146 >gi|291458397|ref|ZP_06597787.1| iron-sulfur cluster assembly transcription factor IscR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418930|gb|EFE92649.1| iron-sulfur cluster assembly transcription factor IscR [Oribacterium sp. oral taxon 078 str. F0262] Length = 134 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + L+ A ++D P I +I+E IS +L +I+ +VK G + +VR Sbjct: 1 MMISTKGRYALTTLIDIAENSDGRTPVSIKEISERRGISLKYLEQIIALMVKGGFLRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG RPA +I + D++ A E + EC K C +C + R+ A Sbjct: 61 GARGGYLFTRPASEIAVGDILNAAEGTLAPVECLMDGK-SCEKSATCPTFPLYREIDEAI 119 Query: 119 FDVLTQYSIECLVRN 133 + V+ +Y + L++ Sbjct: 120 YSVVNRYHLSDLLKK 134 >gi|161505130|ref|YP_001572242.1| transcriptional repressor NsrR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866477|gb|ABX23100.1| hypothetical protein SARI_03264 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 125 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ I I DVV+ E Sbjct: 12 ISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 72 LV-NCSSEF---CHITPACRLKQALSKAVRSFLKELDNYTLADLVEENQPLYKLL 122 >gi|289208504|ref|YP_003460570.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thioalkalivibrio sp. K90mix] gi|288944135|gb|ADC71834.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. K90mix] Length = 159 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + +M AIH+ P ++ I++ IS +L ++ L KA +VE VRG Sbjct: 1 MKLSTKGRYAVTAMMDLAIHDRVGPVTLADISQCQGISLSYLEQLFAKLRKADLVEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL + ADQI+I +++ A +ES V C HK DC C L L + L Sbjct: 61 PGGGYRLAKRADQISIANIITAVDESVDVTRC-KGHK-DCQDGERCLTHELWDDLSQQLY 118 Query: 117 AFFD--VLTQYSIECLVRNRSSIKKI 140 F D L Q++ NR ++K+ Sbjct: 119 DFLDGITLAQFA------NRPEVQKV 138 >gi|153835424|ref|ZP_01988091.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi HY01] gi|156972466|ref|YP_001443373.1| transcriptional repressor NsrR [Vibrio harveyi ATCC BAA-1116] gi|189030890|sp|A7MX86|NSRR_VIBHB RecName: Full=HTH-type transcriptional repressor nsrR gi|148868029|gb|EDL67214.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi HY01] gi|156524060|gb|ABU69146.1| hypothetical protein VIBHAR_00086 [Vibrio harveyi ATCC BAA-1116] Length = 141 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + +IT+ VV+ E V C C + +C L L KA AF Sbjct: 61 KNGGIRLMKAPQEITVGGVVRDLEPLDLV-NCSVEF---CHITPACRLKEKLAKAKLAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L +IE L+ + S + Sbjct: 117 AELDDCTIEELLSDNSEL 134 >gi|172057254|ref|YP_001813714.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989775|gb|ACB60697.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 130 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 10/135 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57 M +T+ TDY IRVL++ +H P R+ QI E IS+ L KI+ L + G++ + Sbjct: 1 MKMTRSTDYAIRVLLFTTLH---PTRLVQIQEVADYYDISKNHLMKIVHALSRFGLITSY 57 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +GR GG +L + +IT+ ++V+ E+ ++ E F D L + A Sbjct: 58 QGRNGGFKLAKDPSEITLGEIVQLFEKVSYL-ESFPEIHEDENL---ENMKEAFDYAFLQ 113 Query: 118 FFDVLTQYSIECLVR 132 F + L YS++ L+ Sbjct: 114 FSEALKAYSLQDLIH 128 >gi|300723225|ref|YP_003712525.1| hypothetical protein XNC1_2289 [Xenorhabdus nematophila ATCC 19061] gi|297629742|emb|CBJ90348.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 180 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T +YGI L++ + D ++AE IS FL KIL L KAGIV + G R Sbjct: 3 YITVSVEYGIHCLLWFVDNPDRSLSSRELAELQGISPSFLAKILPRLEKAGIVNSNEGIR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTSVL 111 GG RL PA++IT L ++ A E + EC ++ D + +C + V+ Sbjct: 63 GGYRLALPAEKITFLSIIDAIEGYKPLFECQEVRQRCAIFENTNPPDWAISDTCSVHKVI 122 Query: 112 RKALNAFFDVLTQYSI 127 +A A DVL ++ Sbjct: 123 LQAEKAMRDVLANQTL 138 >gi|167628038|ref|YP_001678538.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598039|gb|ABZ88037.1| putative transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 140 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR Sbjct: 1 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F Sbjct: 61 FGGVSISQATYNIKLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119 Query: 121 VLTQY 125 L Y Sbjct: 120 RLNDY 124 >gi|21673360|ref|NP_661425.1| hypothetical protein CT0525 [Chlorobium tepidum TLS] gi|21646455|gb|AAM71767.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 136 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 6/135 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 + ++++ +YG+ + Y A+ P ++ ++A S++FL K +Q L KAGI +V Sbjct: 2 LQVSRKFEYGLHAVTYLAMKG--PEQVVTVKELAAEIGFSQVFLAKAMQSLNKAGITRSV 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G +GG L RPA+QIT+ D+ A E + C + C + +C + Sbjct: 60 QGVKGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCQCEIESNCTHKGYMLNLQKR 118 Query: 118 FFDVLTQYSIECLVR 132 +D+L + ++ L+ Sbjct: 119 IYDLLAETTVAVLLE 133 >gi|153810455|ref|ZP_01963123.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174] gi|149833634|gb|EDM88715.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174] Length = 144 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ +H + I IA IS+ +L +++ L KAG+V++ RG Sbjct: 1 MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL RPA +I++ DV++ E S A+C Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQC 92 >gi|291523269|emb|CBK81562.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus GD/7] Length = 143 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y +R+++ A ND+ P RI IA IS +L +I+ L KAG V+++R Sbjct: 1 MKISTRGRYALRMMLDIAT-NDHGEPVRIKDIAARQDISVKYLEQIVSVLTKAGYVKSIR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG RL R T+ +++ TE C + DCP + C + ++ A Sbjct: 60 GPQGGYRLARLPKDYTVGMILRLTEGDLSPVSC-TDNNYDCPKMQDCVTIRIWKELDEAI 118 Query: 119 FDVLTQYSIECLV 131 V+ +Y++E L+ Sbjct: 119 NSVIDKYTLEDLL 131 >gi|52840837|ref|YP_094636.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148360750|ref|YP_001251957.1| rrf2 family transporter protein [Legionella pneumophila str. Corby] gi|52627948|gb|AAU26689.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148282523|gb|ABQ56611.1| rrf2 family protein [Legionella pneumophila str. Corby] Length = 153 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG V++Y A H+ IA ++ + KIL+ L AG++ +VRG Sbjct: 2 LRVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA +I++ ++ A EE EC + DC L G C + R +A Sbjct: 62 SGGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIET 120 Query: 121 VLTQYSIECLVR 132 L S+E L + Sbjct: 121 ALDSVSLEALAK 132 >gi|257792249|ref|YP_003182855.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|317490177|ref|ZP_07948665.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|325833540|ref|ZP_08165989.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] gi|257476146|gb|ACV56466.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|316910671|gb|EFV32292.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|325485464|gb|EGC87933.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] Length = 136 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y +R+++ A + ++ Q AE +S +L ++ LVKAG++++VR Sbjct: 1 MMISTRGRYALRLMIDIARQGEAGALVTMRQAAEREDLSVKYLEQLGGALVKAGVLKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L RPADQIT DV++ATE S C CP C + R A Sbjct: 61 GVSGGYLLARPADQITAGDVLRATEGSCAPVSCLEDGAEACPRRDQCVAINFWRGLDQAI 120 Query: 119 FDVLTQYSIECLVR 132 D + ++ LV+ Sbjct: 121 EDYVDNVTLADLVQ 134 >gi|52785847|ref|YP_091676.1| hypothetical protein BLi02094 [Bacillus licheniformis ATCC 14580] gi|163119474|ref|YP_079257.2| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52348349|gb|AAU40983.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|145902981|gb|AAU23619.2| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 133 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN + Q+AE +S +L KIL L KAG++E+ Sbjct: 1 MKYSKATNYALHTMLFLAA--GAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESA 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G GG RL R + I+ LD++ A E + + +C +H +C Sbjct: 59 SGANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNHGSEC 100 >gi|282899141|ref|ZP_06307122.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] gi|281196057|gb|EFA70973.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] Length = 149 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H N P +I QIA I + +L ++L L + GI+++ R Sbjct: 1 MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L R +IT+LD+++ E +AE + K S + + ++A A Sbjct: 61 GSKGGYLLAREPRKITLLDILECLEGLDIKIAEDNTNPKTAPKTADSGIIDEIWKEARQA 120 Query: 118 FFDVLTQYSIECLVRNRS 135 VL +YS+E L R+ Sbjct: 121 ANLVLEKYSLEDLCEKRT 138 >gi|239907465|ref|YP_002954206.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239797331|dbj|BAH76320.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 151 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +Y IR ++Y A+H D R +IAEA I FL K+ Q L KAG++ + Sbjct: 1 MRLTRAGEYAIRCVLYLAMHQDRTLIGR-KEIAEAMDIPAQFLGKVAQQLAKAGVISIRQ 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R IT+L V++A + F+ +C C C + +V A Sbjct: 60 GSLGGYELARRPQDITLLAVIEAIDGEIFLNDCI-QRPGSCDRQAICSVHNVWDTARRQL 118 Query: 119 FDVLTQYSI 127 D L ++ Sbjct: 119 RDTLGSTTL 127 >gi|86159005|ref|YP_465790.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775516|gb|ABC82353.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-C] Length = 159 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG Sbjct: 5 LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I+ LDV+++ E + C C +C + SV R Sbjct: 65 PHGGYALARMPVDISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERML 123 Query: 120 DVLTQYSIECL 130 DV Q + L Sbjct: 124 DVYRQAKLSEL 134 >gi|39995641|ref|NP_951592.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39982404|gb|AAR33865.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|298504663|gb|ADI83386.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sulfurreducens KN400] Length = 154 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R + A ++ P ++ I+ IS +L +I Q L +AGI+++ RG Sbjct: 1 MKLSTKSRYGLRAIFDIAYNSGSLPAQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117 +GG L + ++IT+ DV+ ATE + EC + K +C G+C + +A Sbjct: 61 PQGGYCLAKKPEEITVADVLLATERDINLVECTSKRKKKGECTFDGTCVTQELWCEAGAK 120 Query: 118 FFDVLTQYSIECL 130 D + ++++ L Sbjct: 121 LLDFFSGFTVKDL 133 >gi|161505868|ref|YP_001572980.1| hypothetical protein SARI_04045 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867215|gb|ABX23838.1| hypothetical protein SARI_04045 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 167 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 8 DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +YGI LM C + + R + +IA+ + +L KI L KAG+V ++ G+ GG Sbjct: 9 EYGIHSLM-CMVDSKGDAREMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115 +L +PA+ IT+LDVV A + + EC F G CG+ SV+ A Sbjct: 68 QLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLTVFDEQPPAWACEGICGVRSVMDMAQ 127 Query: 116 NAFFDVLTQYSIECLVRN 133 + L Q++I L R Sbjct: 128 QRMEEALEQHTILDLARK 145 >gi|331091033|ref|ZP_08339875.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405255|gb|EGG84791.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium 2_1_46FAA] Length = 152 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A +++ P I+ I+ ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEVEPVSINSISARQGISERYLEQLMALLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG L + + I++ DV++A E EC S + C G C V ++ + Sbjct: 61 AGGGYVLAKEKEDISVGDVLRALEGKLEPVECSGFSAEESCEAAGGCVTKYVWQRINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 + + + ++ LVR ++ I Sbjct: 121 NNTVDEIKLDQLVRESKAMNSI 142 >gi|269791825|ref|YP_003316729.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099460|gb|ACZ18447.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 146 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + + ++T Y +R L ++ + P +I++IAEA I FL IL L G VE++RG Sbjct: 4 IGVNQKTQYALRALYELSVQYRAGPVKIARIAEAQRIPRKFLEVILSELKAMGYVESLRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RP +I+I DV++ + +C C L G C + +A A Sbjct: 64 REGGYVLARPPWEISIGDVIRDVQGPLSPVDCLIGRG-GCRLSGQCSFRPLWARAARALE 122 Query: 120 DVLTQYSIECLV 131 +V + + LV Sbjct: 123 EVYDGTTFQDLV 134 >gi|113869472|ref|YP_727961.1| putative transcriptional regulator [Ralstonia eutropha H16] gi|113528248|emb|CAJ94593.1| putative transcriptional regulator [Ralstonia eutropha H16] Length = 150 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY A + P I+++ + IS L K+ L K G + RG Sbjct: 1 MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWISATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L A+++TI +++ E V +C C L G+C L L A AF+ Sbjct: 61 RHGGLQLGPGAERLTIGTILRELEGHKAVIDC---DNPPCALNGNCRLKRALDVAEQAFY 117 Query: 120 ---------DVLTQYSIECLVR 132 DV + E ++R Sbjct: 118 LALDDVTLADVTGSQTAESIIR 139 >gi|317122069|ref|YP_004102072.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermaerobacter marianensis DSM 12885] gi|315592049|gb|ADU51345.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter marianensis DSM 12885] Length = 141 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + A + P + ++AEA + E +L +++ PL K G+V++VRG Sbjct: 1 MQLSTRGRYGVRAMFELARRYGQGPVPLREVAEAQQLPENYLEQLMAPLRKGGLVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 +GG L R QIT+ D+V+ + + + D G+ + + +A+ A Sbjct: 61 AQGGYVLARSPRQITVADIVR-------LLDGPIGPETDQEATGTPSVADPVWEAVRQAI 113 Query: 119 FDVLTQYSIECLVRN 133 DVL +++ LVR Sbjct: 114 TDVLEGTTLDDLVRQ 128 >gi|283852223|ref|ZP_06369496.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283572449|gb|EFC20436.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 145 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG+R+L+ A+H ++ P RI IA+ IS +L ++++ L KAG + + RG Sbjct: 1 MQLTTRSRYGLRMLIDIALHGSERPVRIQDIAKRRNISVKYLEQLIRALKKAGFIHSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I + DVV+A E + EC + C + C + +A + F Sbjct: 61 PKGGHILAMAPEDIRVGDVVRALEVRPELTECVGNPDA-CLIASDCVTRQIWARATASLF 119 Query: 120 DVLTQYSI-ECLVRNRSS 136 L + + LV+ R S Sbjct: 120 KELDAIHVSDLLVQARKS 137 >gi|281355615|ref|ZP_06242109.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] gi|281318495|gb|EFB02515.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] Length = 148 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R+L+ A++ D P I +IA ISE ++ +++ L KAG V +VR Sbjct: 1 MKISTKGRYGLRILLDIALYRVGDKPRMIREIASNQEISEKYISRLIIELRKAGFVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKA 114 G GG L R + I++LDV++ E + +C S C C T + +K Sbjct: 61 GVNGGYTLTRKPEDISVLDVLETMEGPVAIVDCMNSSGEVCRRKSQCPTQRMWTEINQKI 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137 +AF + +E + N ++ Sbjct: 121 RSAFAAYTLKDLVELYISNGETV 143 >gi|269127506|ref|YP_003300876.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312464|gb|ACY98838.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora curvata DSM 43183] Length = 154 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 15/106 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A+ P Q+AE+ I FL IL L ++G+V + RG Sbjct: 1 MRLSARVDYALRAAAELAVAGSTPVTAVQLAESQQIPPKFLENILGQLRRSGLVRSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 GG L +PAD+I++ D+++A ID PL+G G Sbjct: 61 DGGYWLAKPADEISLADIIRA---------------IDGPLLGVRG 91 >gi|225175552|ref|ZP_03729546.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] gi|225168881|gb|EEG77681.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] Length = 149 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 8/130 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A+H+ + + +A+ ISE +L + L KAG++ +VRG Sbjct: 1 MRLSTKGRYGVRAMFDLALHSGEGAIALKSVAQREHISEKYLEHLFASLKKAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSV---LRK 113 +GG RL RP ++IT+ D+++ E EC H+ C C + S+ +R Sbjct: 61 AQGGYRLARPPEEITLGDIIRVLEGPIAPTECVIDDDGHE-SCERSTDCVMRSIWGNVRD 119 Query: 114 ALNAFFDVLT 123 +N D +T Sbjct: 120 QINEILDGIT 129 >gi|184158243|ref|YP_001846582.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183209837|gb|ACC57235.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] Length = 182 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T +Y I L++ + D P +AE +S F+ KI L KAG+V G R Sbjct: 3 YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG L R A +I+ LD+V A E + EC F + D G C + +V+ Sbjct: 63 GGYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A A D L +++ Sbjct: 123 QAEKAMRDALGAHTL 137 >gi|303249415|ref|ZP_07335637.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302489175|gb|EFL49145.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 150 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 5/145 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A D P IAE I + FL IL L + G V+ RG Sbjct: 1 MPVTQKCQYALRALFELARRKGDGPIPAGGIAERQAIPKRFLEVILHQLRQGGFVDAQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118 + GG L RPA+ +T+ +V++ + +C DCPL G C V ++A A Sbjct: 61 KEGGFYLARPAETVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGGCVFRDVWQEAQAAL 120 Query: 119 FDVLTQYSIECLV---RNRSSIKKI 140 V ++ LV R+R + + Sbjct: 121 EKVYDARNLRDLVEEDRHRHDMAAV 145 >gi|21225697|ref|NP_631476.1| hypothetical protein SCO7427 [Streptomyces coelicolor A3(2)] gi|81858295|sp|Q9L132|NSRR_STRCO RecName: Full=HTH-type transcriptional repressor nsrR gi|7160161|emb|CAB76346.1| Conserved hypothetical protein SC6D11.23 [Streptomyces coelicolor A3(2)] Length = 148 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TD +R LM A+ D P ++AE + K + L G+VE R Sbjct: 1 MRLTKFTDLALRSLMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++++ +V+ E V +C + CPL G+C L LR A AF Sbjct: 61 GRGGGLTLTDLGRRVSVGWLVRELEGEAEVVDCEGDNP--CPLRGACRLRRALRDAQEAF 118 Query: 119 FDVLTQYSIECLV 131 + L ++ LV Sbjct: 119 YAALDPLTVTDLV 131 >gi|319645572|ref|ZP_07999804.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2] gi|317392458|gb|EFV73253.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2] Length = 141 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN + Q+AE +S +L KIL L KAG++E+ Sbjct: 9 MKYSKATNYALHTMLFLAA--GAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESA 66 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G GG RL R + I+ LD++ A E + + +C +H +C Sbjct: 67 SGANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNHGSEC 108 >gi|153813655|ref|ZP_01966323.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174] gi|149830271|gb|EDM85364.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y IRV++ A HN+ + IA+ ISE +L I+ L K V+ +RG Sbjct: 1 MKISTRGRYAIRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116 + GG RL R + TI +++ TE S C H C SC + K LN Sbjct: 61 KGGGYRLVRTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEGFYKLLN 120 Query: 117 AFFDVLT 123 +FD +T Sbjct: 121 EYFDGIT 127 >gi|226303826|ref|YP_002763784.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229492573|ref|ZP_04386376.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus erythropolis SK121] gi|226182941|dbj|BAH31045.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229320559|gb|EEN86377.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus erythropolis SK121] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T + DY +R L+ A P + +A++ I FL +L L + G+V + RG Sbjct: 1 MHITAKVDYAVRTLVELAAVGPDPAKAEFLAKSQVIPHKFLEAVLSDLRRGGLVNSRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L R AD+ITI DV++A E Sbjct: 61 DGGYWLARSADEITIADVIRAVE 83 >gi|237785127|ref|YP_002905832.1| Rrf2 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758039|gb|ACR17289.1| transcriptional regulator, Rrf2 family [Corynebacterium kroppenstedtii DSM 44385] Length = 139 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LTK +D G+R LM+ + ++AEA + K++ L + GI++ RGR Sbjct: 1 MNLTKFSDLGLRALMHMVGSGNARTTAREVAEAINAPRTHVSKVISRLTEFGIIDATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L A+ ++ +V+ E V +C H CP +C L L +A AFF Sbjct: 61 GGGITLVDGAEDYSVGAIVRFLEGPSPVIDC--EHPHPCPFNVNCRLQHELAQAQEAFFA 118 Query: 121 VLTQYSIECLVRNRSSIK 138 L +I+ + R + Sbjct: 119 SLDAVAIKDITPVRPQVP 136 >gi|238019616|ref|ZP_04600042.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748] gi|237863657|gb|EEP64947.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748] Length = 157 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 12/145 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56 M L + TDY R++++ A+ P+ S +AE I E FL KI++ L+ AGI+++ Sbjct: 8 MKLNQATDYAFRMVLHMAL---LPSGTKLTGSVLAEQELIPERFLLKIMRSLIAAGIMKS 64 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRK 113 RG GG L R +I++LDV++A E ++ C S C +G C + + Sbjct: 65 FRGVDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--MGHCAINEAMGT 122 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIK 138 + + L Q + + L + I+ Sbjct: 123 IQDQLINQLEQVNFKTLAQREQLIE 147 >gi|47096299|ref|ZP_00233896.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|254830378|ref|ZP_05235033.1| hypothetical protein Lmon1_03417 [Listeria monocytogenes 10403S] gi|254900131|ref|ZP_05260055.1| hypothetical protein LmonJ_09970 [Listeria monocytogenes J0161] gi|254911315|ref|ZP_05261327.1| Rrf2 family protein [Listeria monocytogenes J2818] gi|254935642|ref|ZP_05267339.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|47015344|gb|EAL06280.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|258608223|gb|EEW20831.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|293589246|gb|EFF97580.1| Rrf2 family protein [Listeria monocytogenes J2818] Length = 138 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKA +E+V Sbjct: 1 MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|291085972|ref|ZP_06571283.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220] gi|291069042|gb|EFE07151.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220] Length = 117 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ E +S + KI+ L +AG V +RG+ GG+RL +PA I I DVV+ E Sbjct: 4 ISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPAKAIGIGDVVRELEPLS 63 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 64 LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 114 >gi|258516089|ref|YP_003192311.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] gi|257779794|gb|ACV63688.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] Length = 143 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 18/114 (15%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISE------LFLFKILQPLVKAGIV 54 M + + TDY R + Y ++ P Q+ EA I+E FL KI L+KAGIV Sbjct: 1 MKINQATDYAFRAVFYLSL---LPR--GQVVEAKLIAEDENIPTRFLLKIFPQLIKAGIV 55 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS-------HKIDCPL 101 E+ RG RGG L + +IT+ DV++A E V C S H CP+ Sbjct: 56 ESQRGNRGGYSLAKKPAEITLKDVLEAVEGPVMVNRCLLSPEGCNKNHTAICPI 109 >gi|229826314|ref|ZP_04452383.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC 49176] gi|229789184|gb|EEP25298.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC 49176] Length = 153 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R ++ A+H D +S IA ISE +L +++ L KAGIV ++RG Sbjct: 1 MKISTKGRYGLRAVLDIAMH-DEAASVSSIAARQFISENYLERLIAMLKKAGIVNSLRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L RPA++I++ +V++A E +C Sbjct: 60 QGGYVLARPAEEISVGEVLRALEGDLNPVDC 90 >gi|256377869|ref|YP_003101529.1| BadM/Rrf2 family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922172|gb|ACU37683.1| transcriptional regulator, BadM/Rrf2 family [Actinosynnema mirum DSM 43827] Length = 141 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TD +RVLM A D + +A + + + K++Q L K G+V T RGR Sbjct: 1 MHLSKATDIALRVLMLAAA-KDAQLTVDDLATSMNVPRNHVAKVVQRLQKEGLVTTARGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + A ++ VV+ E V +C + CPL +C L LR A AFF Sbjct: 60 NGGVSVPPGARGVSAGHVVRRFEGEDEVVDC---EQGPCPLHRACLLRGALRTAREAFFA 116 Query: 121 VLTQYSIECLV 131 L + L+ Sbjct: 117 SLDTVLLRDLI 127 >gi|167771918|ref|ZP_02443971.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM 17241] gi|167665716|gb|EDS09846.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM 17241] Length = 143 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + +IA+ ISE +L IL+ LV+ + VRG Sbjct: 1 MMISTKGRYALRVMVDLAEHQGEGYIPLKEIAQRQEISEKYLEAILKVLVREHFLIGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALN 116 + GG RL R +Q T +++ TE S C H + CP C + +K +N Sbjct: 61 KGGGYRLSRAPEQYTAGSIIRLTEGSLAPVACLEPHALACPRAAHCRTLPMWKKFDQVVN 120 Query: 117 AFFDVLT 123 FFD T Sbjct: 121 DFFDSYT 127 >gi|317502405|ref|ZP_07960570.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087998|ref|ZP_08336921.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896215|gb|EFV18321.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409309|gb|EGG88758.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium 3_1_46FAA] Length = 131 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK +DY IRV+ A+ + I ++ E I F +KILQ + K+G++E RG Sbjct: 1 MLFTKESDYAIRVIR--ALQDGGKKTIKELCELEQIPSAFGYKILQKMNKSGLIEIRRGP 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG +L + + T+ DVV A E F V EC Sbjct: 59 KGGYQLAKDIGEFTLYDVVTAIEPDFAVMEC 89 >gi|126643101|ref|YP_001086085.1| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978] Length = 144 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MY A +D P I++IA+ +S+ L K++ + K + T+RG+ GG+RL A + Sbjct: 1 MYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGKGGGIRLNPKALDLK 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI-ECLVRN 133 + +V+ + + EC + C L CGL +L +AL +F+ L QY++ E L + Sbjct: 61 LGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQYTLGEVLQQP 117 Query: 134 RS----SIKKIFNA 143 +S S+ +N+ Sbjct: 118 KSASDHSLSPFYNS 131 >gi|169795834|ref|YP_001713627.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|260554898|ref|ZP_05827119.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC 19606] gi|301345360|ref|ZP_07226101.1| putative transcriptional regulator [Acinetobacter baumannii AB056] gi|301512433|ref|ZP_07237670.1| putative transcriptional regulator [Acinetobacter baumannii AB058] gi|301596111|ref|ZP_07241119.1| putative transcriptional regulator [Acinetobacter baumannii AB059] gi|332853212|ref|ZP_08434632.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332869405|ref|ZP_08438771.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] gi|169148761|emb|CAM86627.1| conserved hypothetical protein; putative transcriptional regulator [Acinetobacter baumannii AYE] gi|193077439|gb|ABO12252.2| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978] gi|260411440|gb|EEX04737.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC 19606] gi|332728782|gb|EGJ60142.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332732736|gb|EGJ63953.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] Length = 182 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T +Y I L++ + D P +AE +S F+ KI L KAG+V G R Sbjct: 3 YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG L R A +I+ LD+V A E + EC F + D G C + +V+ Sbjct: 63 GGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A A D L +++ Sbjct: 123 QAEKAMRDALGAHTL 137 >gi|221633611|ref|YP_002522837.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM 5159] gi|221156767|gb|ACM05894.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM 5159] Length = 146 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +YG+R ++ A ++ P +S IA+ + +L +++ PL +AG+V + RG Sbjct: 1 MKVSTRGEYGLRAMVSLARMYGRGPMPLSVIAQDSAVPLAYLEQLMLPLRRAGLVVSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 GG L RP +Q+ + ++ + E +C A I CP++ C V K + Sbjct: 61 AHGGYELARPPEQVKVGEIYRVMEGPIAPMDCVREDADEDI-CPMIDGCATRIVWLKLRD 119 Query: 117 AFFDVLTQYSIECLVRN 133 + +VL ++ L+ + Sbjct: 120 SIVEVLDSTTLADLISH 136 >gi|300854396|ref|YP_003779380.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434511|gb|ADK14278.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 148 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 76/146 (52%), Gaps = 2/146 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH +D P+ I I+E ISE +L ++ L K+ +V+++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYSDEPSSIKSISERQNISEYYLEQLFSNLRKSNLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L R IT+ D++K E +++C +++ C + C + + + Sbjct: 61 AQGGYILNREPKDITVADIMKVLEGPIEISDCVDENNENSCSNMDCCATRLLWSRIKESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144 V+ +++ +V + +K+ G Sbjct: 121 EQVMKSTTLQDMVDDYIQMKQEKTKG 146 >gi|15807088|ref|NP_295817.1| rrf2 protein [Deinococcus radiodurans R1] gi|6459891|gb|AAF11645.1|AE002045_5 rrf2 protein [Deinococcus radiodurans R1] Length = 197 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + +AE +S+ +L +I L +AG ++++RG Sbjct: 46 MWVSTKAQYGLRALVEIGRRGGEAVPLKDVAERQGLSQHYLEQIASNLRRAGFIKSIRGA 105 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA+ I DVV A E S C + C CG ++ + A D Sbjct: 106 HGGYRLARPAEAINAYDVVTALEGSIAPVSCVEDDHV-CDSRNVCGTQNLWFRVDAALRD 164 Query: 121 VLTQYSIECLV 131 VL ++ L+ Sbjct: 165 VLGNTTLADLI 175 >gi|168700728|ref|ZP_02733005.1| hypothetical protein GobsU_14484 [Gemmata obscuriglobus UQM 2246] Length = 154 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +Y +R +++ A +QIAEA + + +L KILQ L K GIV+T RG GG Sbjct: 3 SRTVEYALRAVVHLAHEAPKARTTAQIAEATQVPKDYLSKILQGLAKKGIVDTQRGVGGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAEC---FASHKID-CPL 101 V L + +TILDVV A E + C +H + CPL Sbjct: 63 VSLTKSPHDLTILDVVNAVEPIERITTCPLNLPNHGPNLCPL 104 >gi|257469482|ref|ZP_05633574.1| hypothetical protein FulcA4_09098 [Fusobacterium ulcerans ATCC 49185] gi|317063726|ref|ZP_07928211.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689402|gb|EFS26237.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 7/126 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L+Y I+ D NRI ++I+E I LF +IL+ L KA +V Sbjct: 1 MRLKNEIEYVFRILLYLTINGD--NRIISSNEISEKEEIPHLFSLRILKKLEKADLVLIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALN 116 +G +GG +L + + +IT+ D +++ E + + +C S + C L G+CG+ +L+ + Sbjct: 59 KGAKGGYKLKKDSSEITLKDAIESIEGNICIKDCLESPE-SCTLRKGNCGVHRILKDIES 117 Query: 117 AFFDVL 122 F L Sbjct: 118 QFISRL 123 >gi|295695250|ref|YP_003588488.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] gi|295410852|gb|ADG05344.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] Length = 155 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ RT+YG+R L+ A + P QIAE I E FL +I+ L +AGIV++VRG Sbjct: 1 MKLSNRTEYGLRALVTLAERSGGAPMSTRQIAEIEGIPEPFLDQIMVLLRRAGIVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 GG L + D++++ +VV+ E S + C D Sbjct: 61 VNGGFLLAQSPDRVSVGEVVRVLEGSLLLIGCVDEENGD 99 >gi|293607996|ref|ZP_06690299.1| transcriptional regulator [Acinetobacter sp. SH024] gi|292828569|gb|EFF86931.1| transcriptional regulator [Acinetobacter sp. SH024] Length = 182 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T +Y I L++ + D P +AE +S F+ KI L KAG+V G R Sbjct: 3 YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG L R A +I+ LD+V A E + EC F + D G C + +V+ Sbjct: 63 GGYLLARSAHEISFLDIVNAIEGEKPLFECQEVREKCAVFNNAPPDWATSGVCAVHAVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A A D L +++ Sbjct: 123 QAEKAMRDALGAHTL 137 >gi|284800916|ref|YP_003412781.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578] gi|284994102|ref|YP_003415870.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923] gi|284056478|gb|ADB67419.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578] gi|284059569|gb|ADB70508.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923] Length = 138 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + ++Y A N P + + ++A +S +L K+L LVKA +E+V Sbjct: 1 MKFSKATNYALHTIVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 G GG +L PA I+ LDV++A E C +H P C + V+ KA Sbjct: 59 TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115 Query: 117 AFFDVLTQYSIECLV 131 D L++ ++ +V Sbjct: 116 QMEDYLSKQTVGSIV 130 >gi|227357123|ref|ZP_03841492.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227162655|gb|EEI47622.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 126 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I+++ + +S + KI+ L G VE +RG+ GG+RL +PA I + +VV+A E Sbjct: 12 ITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRGKNGGIRLGKPAADIIVGEVVRAL-EPL 70 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 + C A C + +C L VL +A+ F L ++++ LV N S + K+ Sbjct: 71 SLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSPLYKLL 122 >gi|153953942|ref|YP_001394707.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854556|ref|YP_002471678.1| hypothetical protein CKR_1213 [Clostridium kluyveri NBRC 12016] gi|146346823|gb|EDK33359.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568280|dbj|BAH06264.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 148 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH D P I I+E ISE +L ++ L K+ ++ ++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGDEPLSIKTISERQGISEYYLEQLFSNLRKSNLIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L R IT+ D++ E +++C +++ C + C + + + Sbjct: 61 SQGGYILNREPKNITVWDIMGVLEGPIEISDCVDDNNESSCDNIDCCATRLLWSRIKDGI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 +++ +++ +V + +S+K+ Sbjct: 121 DEIMKSTTLQDMVDDYNSMKQ 141 >gi|310658799|ref|YP_003936520.1| DNA-binding transcriptional repressor [Clostridium sticklandii DSM 519] gi|308825577|emb|CBH21615.1| DNA-binding transcriptional repressor [Clostridium sticklandii] Length = 148 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG++ + A+ + P + IA+ +SE +L +I L K+G+V++VR Sbjct: 1 MKLSTKGRYGLKAIFELALKEEENLPLSLKYIADKNGLSEQYLEQIFAILKKSGLVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L +P+ QIT+ V++A E ++C DC C V ++ ++ Sbjct: 61 GAQGGYYLSKPSSQITVGQVLRALEGPMAPSDCVLEEDADCENSDFCVTKVVWQRIKDSV 120 Query: 119 FDVLTQYSIECLV 131 V+ +++ +V Sbjct: 121 DSVIDSVTLKDMV 133 >gi|253583197|ref|ZP_04860395.1| RRF2 family protein [Fusobacterium varium ATCC 27725] gi|251833769|gb|EES62332.1| RRF2 family protein [Fusobacterium varium ATCC 27725] Length = 140 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R Sbjct: 1 MKISTKVRYGLRALAYIAEKSGEGKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116 G GG RL + ++IT+ + K +E V +C S HK C +CG T + K + Sbjct: 61 GPNGGYRLAKEPNEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGSTCIWSKLDS 119 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + ++ ++N+ I Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140 >gi|323702187|ref|ZP_08113854.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] gi|323532874|gb|EGB22746.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] Length = 147 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H P + +AE +SE +L +++ L KAG+V+++RG Sbjct: 1 MRLSTKGHYGLKAMFDLAMHYGAEPIPLKLVAERQSLSEHYLEQLIAVLRKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L RP +I + DV++A E +C + + C V C + K ++ Sbjct: 61 AQGGYILARPPAEIKVGDVIRALEGPIAPLDCVSEQEPTLCEKVDYCISRDIWAKVRDSI 120 Query: 119 FDVLTQYSIECLVRN 133 +VL ++E + R Sbjct: 121 AEVLDSITLEDMCRE 135 >gi|54293583|ref|YP_125998.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens] gi|53753415|emb|CAH14868.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens] gi|307609396|emb|CBW98885.1| hypothetical protein LPW_06721 [Legionella pneumophila 130b] Length = 153 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG V++Y A H IA ++ + KIL+ L AG++ +VRG Sbjct: 2 LRVSKLADYGTVVMVYLAKHPQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA +I++ ++ A EE EC + DC L G C + R +A Sbjct: 62 SGGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIET 120 Query: 121 VLTQYSIECLVR 132 L S+E L + Sbjct: 121 ALDSVSLEALAK 132 >gi|302548372|ref|ZP_07300714.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653] gi|302465990|gb|EFL29083.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653] Length = 149 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TD +R +M A+ P QIA + L K+ L G++ET RGR Sbjct: 1 MRLTKSTDLALRAIMRLAVAGAEPCTARQIAGEMRVQYSHLAKVAARLQHLGLIETRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ +V+ E + V +C CPL C L LR+A AFF Sbjct: 61 GGGLVLTETGRTASVGQLVRELEGADEVVDC--EGDTPCPLRQGCRLRMALRQAQEAFFS 118 Query: 121 VLTQYSIECLV 131 L ++ L+ Sbjct: 119 SLDPLTVTDLI 129 >gi|297617120|ref|YP_003702279.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] gi|297144957|gb|ADI01714.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] Length = 133 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++T+Y +RV++ A + +I+E I E+FL K +Q L +AG+V T RG Sbjct: 1 MQITRQTEYAVRVMLELARLPKGEMLSAREISEKQQIPEVFLKKTIQILARAGLVHTQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGGV+L + ++T+ D++ A E + C +C C + VL +A A Sbjct: 61 PRGGVQLAKDPTEVTLADILVAVEGPLALNVCLVPG-YECVNKPDCKVHRVLARAQKALV 119 Query: 120 DVLT 123 L+ Sbjct: 120 SELS 123 >gi|157736632|ref|YP_001489315.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri RM4018] gi|315635796|ref|ZP_07891058.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] gi|157698486|gb|ABV66646.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri RM4018] gi|315479775|gb|EFU70446.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] Length = 132 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++++Y + L+ A N P + +++ IS+ FL KI+Q L K +V + RG Sbjct: 1 MLLTRKSEYALLSLISIA-KNKEPKNVDVLSKELDISKSFLAKIMQNLAKHELVISHRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP--LVGSC---GLTSVLRKA 114 GG L +P D+ITIL++V+A EE V EC S + CP SC L + L+ Sbjct: 60 NGGFVLKKPLDEITILEIVEAAEERVPMVFECAPSLQ-SCPNNKAKSCIIWPLLNNLQFK 118 Query: 115 LNAFFDVLTQYSI 127 +N F LT I Sbjct: 119 VNDFLSKLTLKDI 131 >gi|300813621|ref|ZP_07093949.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512257|gb|EFK39429.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 135 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 49/93 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY R+ + A H + IAE C ++E F +IL+ L AGI RG Sbjct: 1 MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93 +GG L RP ++IT+ ++ A E + C A Sbjct: 61 KGGYGLKRPKEEITLYQIICAIEGPTVINRCLA 93 >gi|210615813|ref|ZP_03290794.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787] gi|210150149|gb|EEA81158.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787] Length = 151 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 75/141 (53%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A +++ P IS I+ ISE +L +++ L +AG+++++RG Sbjct: 1 MKISTKGRYGLRALIDIAQYSEIEPVPISSISARQDISERYLEQLMALLKRAGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L + +I++ DV++A E + EC A H+ + C G C V +K + Sbjct: 61 AGGGYVLAKDVSEISVGDVLRALEGNLEPVECAAFHEEESCEAAGGCVTKYVWKKINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + + ++ LV I++ Sbjct: 121 NRTVDEIDLKQLVEESKQIQQ 141 >gi|317062001|ref|ZP_07926486.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185] gi|313687677|gb|EFS24512.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185] Length = 152 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R Sbjct: 13 MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 72 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116 G GG RL + +IT+ + K +E V +C S HK C +CG T + K + Sbjct: 73 GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 131 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + ++ ++N+ I Sbjct: 132 AMTKILKETTLNEFIKNKDMI 152 >gi|298247460|ref|ZP_06971265.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297550119|gb|EFH83985.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 168 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 5/84 (5%) Query: 1 MHLTKRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L++ ++G+ VL P + +AE +SE +L K LQ L + GI+E+V Sbjct: 1 MKLSEGVEWGLHCTSVLASLPTKATLPTKA--LAEYHGVSETYLSKHLQALTRGGIIESV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKA 81 G RGG RL RPA +IT+LDVV+A Sbjct: 59 PGPRGGYRLARPATEITLLDVVEA 82 >gi|282855397|ref|ZP_06264720.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] gi|282586777|gb|EFB92022.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] Length = 151 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R YG+R ++ + + P +S +A+A +S+ +L +++ L +AGI+ + R Sbjct: 1 MKVSTRAHYGLRAVIAISEMARSGLPVSVSDVAKAENLSDTYLEQLVSKLRRAGILRSYR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKAL 115 G RGG L R D IT+ +V+KA E EC C L G +S + L Sbjct: 61 GARGGYELVRDPDTITVAEVLKAAGEQIIFPECTTPE--GCELAHQRGHVCASSHFWQNL 118 Query: 116 NAFFD-VLTQYSIECLVRN 133 N+ + + + ++ L+RN Sbjct: 119 NSMVNKIAEETTVGSLIRN 137 >gi|270308844|ref|YP_003330902.1| transcriptional regulator [Dehalococcoides sp. VS] gi|270154736|gb|ACZ62574.1| transcriptional regulator [Dehalococcoides sp. VS] Length = 148 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R + + + A+H + P I +A+ ISE +L ++ PL AG+V +VRG Sbjct: 1 MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I + D+VKATE S +EC ++ C C +V K A Sbjct: 61 ANGGFVLARDPKEIRLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLKIKKATD 119 Query: 120 DVLTQYSIECLVRN 133 ++L ++E LV+ Sbjct: 120 EILDSINLENLVQQ 133 >gi|328948431|ref|YP_004365768.1| BadM/Rrf2 family transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328448755|gb|AEB14471.1| transcriptional regulator, BadM/Rrf2 family [Treponema succinifaciens DSM 2489] Length = 142 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ C+ D ++ IAE +S +L I+ LVKAG+VE +RG Sbjct: 1 MLISTRGRYALRVIIELCSHGKDEFVPLNVIAENQDVSLKYLESIVALLVKAGLVEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG RL + AD+ ++ +++K TE + C + CP C + K Sbjct: 61 KKGGYRLTKDADEYSVGEILKLTEGTLAPVTCLEENAETCPRSAECKTLPMWEKLDTIIS 120 Query: 120 DVLTQYSIECLVRNRS 135 + L I L++ S Sbjct: 121 NYLYSVKISDLLKPES 136 >gi|300821270|ref|ZP_07101418.1| Rrf2 family protein [Escherichia coli MS 119-7] gi|300899716|ref|ZP_07117942.1| Rrf2 family protein [Escherichia coli MS 198-1] gi|300922416|ref|ZP_07138536.1| Rrf2 family protein [Escherichia coli MS 182-1] gi|300940665|ref|ZP_07155226.1| Rrf2 family protein [Escherichia coli MS 21-1] gi|300949137|ref|ZP_07163179.1| Rrf2 family protein [Escherichia coli MS 116-1] gi|300957838|ref|ZP_07170016.1| Rrf2 family protein [Escherichia coli MS 175-1] gi|300987257|ref|ZP_07178086.1| Rrf2 family protein [Escherichia coli MS 45-1] gi|300988644|ref|ZP_07178784.1| Rrf2 family protein [Escherichia coli MS 200-1] gi|301023423|ref|ZP_07187206.1| Rrf2 family protein [Escherichia coli MS 69-1] gi|301646624|ref|ZP_07246490.1| Rrf2 family protein [Escherichia coli MS 146-1] gi|309796989|ref|ZP_07691389.1| Rrf2 family protein [Escherichia coli MS 145-7] gi|300305877|gb|EFJ60397.1| Rrf2 family protein [Escherichia coli MS 200-1] gi|300315469|gb|EFJ65253.1| Rrf2 family protein [Escherichia coli MS 175-1] gi|300356727|gb|EFJ72597.1| Rrf2 family protein [Escherichia coli MS 198-1] gi|300397010|gb|EFJ80548.1| Rrf2 family protein [Escherichia coli MS 69-1] gi|300407734|gb|EFJ91272.1| Rrf2 family protein [Escherichia coli MS 45-1] gi|300421235|gb|EFK04546.1| Rrf2 family protein [Escherichia coli MS 182-1] gi|300451385|gb|EFK15005.1| Rrf2 family protein [Escherichia coli MS 116-1] gi|300454553|gb|EFK18046.1| Rrf2 family protein [Escherichia coli MS 21-1] gi|300526159|gb|EFK47228.1| Rrf2 family protein [Escherichia coli MS 119-7] gi|301075171|gb|EFK89977.1| Rrf2 family protein [Escherichia coli MS 146-1] gi|308119402|gb|EFO56664.1| Rrf2 family protein [Escherichia coli MS 145-7] gi|315288459|gb|EFU47857.1| Rrf2 family protein [Escherichia coli MS 110-3] gi|315293540|gb|EFU52892.1| Rrf2 family protein [Escherichia coli MS 153-1] gi|315299059|gb|EFU58313.1| Rrf2 family protein [Escherichia coli MS 16-3] gi|323171610|gb|EFZ57256.1| rrf2 family protein family protein [Escherichia coli LT-68] gi|324005241|gb|EGB74460.1| Rrf2 family protein [Escherichia coli MS 57-2] gi|324013821|gb|EGB83040.1| Rrf2 family protein [Escherichia coli MS 60-1] Length = 125 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ + +S + KI+ L +AG V VRG+ GG+RL +PA I I DVV+ E Sbjct: 12 ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 72 LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 122 >gi|291543838|emb|CBL16947.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. 18P13] Length = 142 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A HN ++ IAE ISE +L I+ L K G+V+ +RG Sbjct: 1 MMISTKGRYALRVMIDLAEHNSGGYVPLADIAERQEISEKYLESIVSMLSKKGLVDALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ D++ TE S C C C + ++ + Sbjct: 61 KGGGYRLNRAPDQYTVADILYVTEGSMAPVACLEPGAKTCDRAAYCRTLDMWKR----LY 116 Query: 120 DVLTQY----SIECLVRNRSS 136 +++TQ+ +I L+ ++S Sbjct: 117 ELITQFFSGITIADLIADKSG 137 >gi|255283408|ref|ZP_05347963.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] gi|255266056|gb|EET59261.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] Length = 152 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A++ + IS +A ISE +L ++ L KAG++ + RG Sbjct: 1 MKLSTKGRYGLRALIDLAVYCGEEAVPISSVAARQGISESYLEQLFAKLRKAGLIISERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 +GG RL +PA++I++ D+++A E + EC + C C V ++ + Sbjct: 61 AQGGYRLAKPAEEISVGDILRALEGNLDAVECPGLKEEAGCENADFCVTKYVWQRINESI 120 Query: 119 FDVLTQYSIECLVRN 133 + + + ++ LVR Sbjct: 121 TEAVDEIRLDQLVRE 135 >gi|257467708|ref|ZP_05631804.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185] Length = 140 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R Sbjct: 1 MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116 G GG RL + +IT+ + K +E V +C S HK C +CG T + K + Sbjct: 61 GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 119 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + ++ ++N+ I Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140 >gi|29832300|ref|NP_826934.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29609419|dbj|BAC73469.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 152 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ +D P + IA A I FL IL L + G+V + RG Sbjct: 1 MRISARADYAVRAVLELAVREDDGPVKAEAIAAAQDIPHKFLEGILGDLRRGGLVASRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL R AD IT+ DV++A + Sbjct: 61 GNGGYRLARAADTITVADVIRAVD 84 >gi|84499296|ref|ZP_00997584.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597] gi|84392440|gb|EAQ04651.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597] Length = 139 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R LM A + ++IA+ IS L K++Q L + G V T RG Sbjct: 1 MRLTSFTDYGLRALMRMASVPERAFSTAEIADEFGISRNHLNKVVQRLARHGFVATRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 GG L PA +I + D+V+ E+ + ECF+ G+C +T V R Sbjct: 61 GGGAILALPASEIGLGDLVRLLEQDQALVECFSPD-------GACCVTPVCR 105 >gi|319941644|ref|ZP_08015968.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319804874|gb|EFW01728.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 178 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+T+ TD +RVLMY CA + +++IAE + + K++ L + G + T RG Sbjct: 1 MHITRFTDLSLRVLMYLCARPSQDRTTVTEIAERIGWTRNHVVKVVHRLSQEGWLATQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L A ++ + +V++ E + C C C L VL A N F+ Sbjct: 61 RTGGLGLDPQARKLRLGNVIRTLEGDDCLINC---KDPPCNFGRGCPLIKVLNDAQNVFY 117 Query: 120 DVLTQYSIE 128 + L Y++E Sbjct: 118 EALNAYTLE 126 >gi|164688544|ref|ZP_02212572.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM 16795] gi|164602957|gb|EDQ96422.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM 16795] Length = 157 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + ++ H+ P I IA I E +L +I L KA ++++VRG Sbjct: 1 MKLSTKGRYGLKAMFELSLTHSKGPVSIKTIAAKQNIPEQYLEQIFSKLKKANLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R A +IT+ DV+ E +++C K C SC V K +A Sbjct: 61 AQGGYLLSRKASEITVYDVLTVLEGPVSISDCLLD-KDSCENSDSCVTKLVWEKMRDAMD 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 +V+ ++ +V N + I Sbjct: 120 NVMKSITLCDMVNNYNETHNI 140 >gi|295109801|emb|CBL23754.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum A2-162] Length = 143 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ A HN+ + IA+ ISE +L I+ L K V+ +RG Sbjct: 1 MKISTRGRYALRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116 + GG RL + + TI +++ TE S C H C SC + K +N Sbjct: 61 KGGGYRLAKTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEEFYKLIN 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 +FD +T +E L+ +S + Sbjct: 121 EYFDGIT---LEDLLEQKSDV 138 >gi|121997341|ref|YP_001002128.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121588746|gb|ABM61326.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 150 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + + TDYG+ +L A +Q+A A + + + K+++ LV AG++ + RG Sbjct: 2 LRINRETDYGVVILSAMARRPGERVNAAQLAGAHGLPQPMVSKVMKQLVHAGLLCSYRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-------LTSVLRK 113 +GG L RP ++I++ +V++A E EC S C V C ++SV+R+ Sbjct: 62 KGGYGLARPPEEISVAEVIEALEGPIAFTECVESGTDTCTHVEDCNASAAWSRISSVVRQ 121 Query: 114 ALNA 117 AL A Sbjct: 122 ALAA 125 >gi|154503925|ref|ZP_02040985.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149] gi|153795524|gb|EDN77944.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149] Length = 156 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A H + P I+ IAE ISE +L +++ L KAGI++++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQHGGEGPVSITSIAERQEISERYLEQLMSKLKKAGIIQSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L + +++++ +V++A E EC + C +C V ++ ++ Sbjct: 61 AQGGYVLAKELEEVSVGEVLRALEGDLNPVECSGFLLEGGCQAADNCVTKYVWQRINDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + + +++ LV ++K+ Sbjct: 121 NQTVDEMNLKALVEVGENLKE 141 >gi|225026056|ref|ZP_03715248.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353] gi|224956618|gb|EEG37827.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +RV++Y A ND I +IAE IS +L I+ L K ++ + R Sbjct: 1 MMVSSKGRYALRVMIYLA-QNDREELIPLKEIAENQNISMKYLEMIVSLLHKGNMLISGR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G++GG RL R + TI ++K TE++ C K+ C G C + +K Sbjct: 60 GKKGGYRLARKPSEYTIGSILKLTEKTLAPVNCLEGGKVTCEKAGYCITLPMWQKLDGII 119 Query: 119 FDVLTQYSIECLVRNR 134 D L ++E L+ R Sbjct: 120 DDYLETVTLEDLLEGR 135 >gi|254471092|ref|ZP_05084495.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] gi|211960234|gb|EEA95431.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] Length = 140 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M A++ + I +++EA + K++Q L + G +++ RGR GG+ L I Sbjct: 1 MLMAVNRNDKWTIDRLSEATNSGRPQVAKVVQILNRKGYIKSRRGRLGGLMLAHAPASIN 60 Query: 75 ILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 I +++ E++F + ECFA S CPL G C L+ AL++F + L ++ ++ N Sbjct: 61 IGKLIRNVEDNFALVECFACSPSKPCPLEGVCRFRGKLKHALDSFMEELDAINLTQIIEN 120 Query: 134 RSSIK 138 I+ Sbjct: 121 ADEIR 125 >gi|194333510|ref|YP_002015370.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311328|gb|ACF45723.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris aestuarii DSM 271] Length = 137 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 2/106 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ +YG+ ++Y A +D + ++A S+ F+ K LQ L +AG+ +V+G Sbjct: 2 LKVSRKFEYGLHAIIYLAGKSDDEIVTVKEMAAEIGFSQEFMAKALQKLKRAGLALSVQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 +GG +L +PA +IT+ DV +ATE + C +S + C +V SC Sbjct: 62 VKGGYKLGKPAAEITVADVGRATEGEPHLMRC-SSEEGSCEIVRSC 106 >gi|313682882|ref|YP_004060620.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313155742|gb|ADR34420.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 134 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK ++Y + L+ A +P +++ IS+ FL KILQ L + GI+ + +G Sbjct: 1 MLMTKASEYALLSLIVLA-KAGHPLDADTLSKELDISKSFLAKILQSLARQGILNSYKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRK---A 114 GG L R + +IT+L+V++A E +S V C S + DCP SCGL L + Sbjct: 60 NGGFELARHSREITVLEVMEAAEGKSPAVFSCSPSQE-DCPSNKAMSCGLWPFLNRLQGK 118 Query: 115 LNAFFDVLTQYSI 127 ++AF LT +I Sbjct: 119 VDAFLGTLTLEAI 131 >gi|239627234|ref|ZP_04670265.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517380|gb|EEQ57246.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 133 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY +R++ A+ + I QI + + F +KIL+ L KAG+V RG Sbjct: 1 MMITRESDYAVRMIR--ALKDGEQLTIGQICQKEQVPRQFAYKILKKLEKAGLVLIRRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L + D +T+LDV++AT+E FF+ C Sbjct: 59 GGGCNLGQSLDVLTLLDVIRATDEEFFLNPCL 90 >gi|120404425|ref|YP_954254.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957243|gb|ABM14248.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium vanbaalenii PYR-1] Length = 148 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M + R++ QIA + SE + K + LV+ G+VE R Sbjct: 1 MQLTRFTDLGLRAMMILSAGEFDDQRVTTRQIAASAGASENHIAKAVSRLVELGLVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V C CPL+ C L + A AF Sbjct: 61 GRVGGLSLTEAGRTASVGRLVRELEGDREVITCDGDSP--CPLLAGCRLRRAMAAAKEAF 118 Query: 119 FDVLTQYSIECLVRN 133 + L +Y++ L R Sbjct: 119 YAELDRYTVTDLARG 133 >gi|94984606|ref|YP_603970.1| BadM/Rrf2 family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554887|gb|ABF44801.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus geothermalis DSM 11300] Length = 153 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + ++E IS+ +L +I L +AG +++VRG Sbjct: 1 MWVSTKAQYGLRALIEIGRRGGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA I +VV A E S C + C CG + + A D Sbjct: 61 HGGYRLARPASAINAYEVVTAMEGSIAPVSCVEEDHV-CDKGNVCGTLELWHRVDTALRD 119 Query: 121 VLTQYSIECLV 131 VL ++ L+ Sbjct: 120 VLGATTLADLI 130 >gi|297559632|ref|YP_003678606.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844080|gb|ADH66100.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 154 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A+ ++ P Q+A A I FL IL L +AG+V + RG Sbjct: 1 MRLSARVDYALRAAAELAVADEGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA +I++ D+++A + Sbjct: 61 VGGYWLARPAGEISLADIIRAVD 83 >gi|262279220|ref|ZP_06057005.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262259571|gb|EEY78304.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 182 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T +Y I L++ + D P +AE +S F+ KI L KAG+V G R Sbjct: 3 YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG L R A +I+ LD+V A E + EC F D G C + +V+ Sbjct: 63 GGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNHAPPDWATSGVCAVHAVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A A D L +++ Sbjct: 123 QAEKAMRDALGAHTL 137 >gi|29832495|ref|NP_827129.1| hypothetical protein SAV_5952 [Streptomyces avermitilis MA-4680] gi|29609614|dbj|BAC73664.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 166 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ D ++A + K++ L G++ RGR Sbjct: 9 MRLLRSTDLALRVLMRLAVTGDSSPTTREVAADMDVPYTHAAKVVAELQHLGLITARRGR 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ VV+A E V +C S CPL +C L LR+A AFF Sbjct: 69 GGGLALMEAGRTASVGAVVRAFEGDGDVVDCEGSTP--CPLNSACRLRGALRRAQEAFFA 126 Query: 121 VLTQYSIECLV 131 L +++ +V Sbjct: 127 SLDPLTVQDMV 137 >gi|145220261|ref|YP_001130970.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206425|gb|ABP37468.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeovibrioides DSM 265] Length = 148 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 52/95 (54%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L K++DY +R L+ D IAE + FL +LQ L++ G+VE+ G RG Sbjct: 4 LNKKSDYAVRALLALGAAGDGFLSARVIAEGQQMPYQFLRGLLQDLIRHGMVESREGARG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 G RL + AD+I +LD+++ + V+EC +I Sbjct: 64 GFRLVKDADEIALLDIIEIFQGPVQVSECMFRKQI 98 >gi|154502552|ref|ZP_02039612.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149] gi|153796744|gb|EDN79164.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149] Length = 146 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YG+R L+ IH N+ P + Q+A IS +L ++ L KAGIV +V+G Sbjct: 1 MKVSTRGRYGLRALVDMTIHSNNAPVSLVQVANRQKISLNYLEQVFGTLRKAGIVVSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG +L R A+ IT+ +V++A E +F + + + D Sbjct: 61 AGGGYKLARDAESITVKEVLEALEGTFSIIDRIPGEEQDA 100 >gi|251796973|ref|YP_003011704.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247544599|gb|ACT01618.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 127 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + + + A D P + Q+A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMAFLIAAAPDRPVGVQQLADKQGVSPTYLSKILTKLVKAGLIESASG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG R + I+ LDV++A E + + EC S +C Sbjct: 61 ANGGYRARGKKEDISFLDVIQAIEGTASIFECCHSENPEC 100 >gi|292669568|ref|ZP_06602994.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] gi|292648777|gb|EFF66749.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] Length = 162 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+H + + IA+ ISE +L +++ PL +AG+VE+VRG Sbjct: 16 MKLSTKGRYSVTALYELALHYGEGVVPLKTIAKTQGISENYLEQLMAPLRRAGLVESVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKID--CPLVGSCGLTSVLRKAL 115 +GG L P +++TI ++ A E + +C ++ +D C G+C + + Sbjct: 76 AQGGYTLALPPEEVTIGQIITAVEGPIALVDCLLTSAEAVDQSCVRAGNCVTRQIWEEVC 135 Query: 116 NAFFDVLTQYSIECLVR 132 + +VL ++ L+R Sbjct: 136 DNINNVLNNIALSDLMR 152 >gi|307718953|ref|YP_003874485.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila DSM 6192] gi|306532678|gb|ADN02212.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila DSM 6192] Length = 155 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + Y IR ++ A+ + P I +IAE IS FL +I L KAGI+++VRG Sbjct: 1 MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKAGIIDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG + RP + ITI D+ A +E + C Sbjct: 61 PGGGFLISRPLESITIKDIFDAVDEGLGITPC 92 >gi|237745942|ref|ZP_04576422.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229377293|gb|EEO27384.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 156 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ T Y IR++ + N P I+ ++E IS+ + + L + I E + G Sbjct: 1 MKLSTHTRYAIRIIFELHLANS-PVSIAALSEQTNISQKVVENVHAILKQNRITEAIIGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RLC+P +I++ D++ +E CF + DCP C SV + Sbjct: 60 RGGIRLCKPLSEISLGDMIDLFDEGVRFVVCFGNKSNDCPRQRVCETRSVWKTISGKIRQ 119 Query: 121 VLTQYSIECLV 131 L + S+E ++ Sbjct: 120 ELGKVSLESIL 130 >gi|293375225|ref|ZP_06621510.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis PC909] gi|325845593|ref|ZP_08168879.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp. HGF1] gi|292646161|gb|EFF64186.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis PC909] gi|325488377|gb|EGC90800.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp. HGF1] Length = 131 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-G 59 M L+K +DY R L+Y A H D + +++ SE + K++ L K V +++ Sbjct: 1 MQLSKFSDYSFRALIYLAQHRDQLCTVEELSMNLNTSEQHMKKVIHKLGKTPYVTSIKGR 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 G C P +I + +++K TE++ + ECF + CPL+ S C L S+ AL F Sbjct: 61 GGGLRLGCEPQ-EINLGEILKITEDNLNILECF-NKSAGCPLLSSGCKLKSITSDALQKF 118 Query: 119 FDVLTQYSIECLV 131 + + Y++E L+ Sbjct: 119 IEEFSNYTLEDLL 131 >gi|197106347|ref|YP_002131724.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196479767|gb|ACG79295.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 145 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R+ Y +R L++ A D P I++IAEA FL IL L + ++ + RGR Sbjct: 2 LSQRSRYALRALVHLAGRTDGRPAAIAEIAEAAATPRKFLEAILLELKRRQLLVSTRGRF 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I+ DV++A + +A C + CP V C + L KA +A Sbjct: 62 GGYRLARPASEISFADVIRALDGPLALAPCASKTAYRPCETCPTVEDCPVHPALAKARDA 121 Query: 118 FFDVLTQYSIE 128 VL +++E Sbjct: 122 VAAVLETWTLE 132 >gi|152985752|ref|YP_001349321.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960910|gb|ABR82935.1| transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 174 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L++ A + + + +AE + L K+ L KAG+V G RGG R Sbjct: 9 EYGIHCLLFLADEKGDSRESSVRALAELQGVPPELLAKVFTRLAKAGLVAATEGVRGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RPA++I++LDVV+A + + EC F + +C + +V+ A Sbjct: 69 LARPANEISVLDVVRAIDGDKSIFECREIRERCALFEGNPPSWATRNTCSIHAVMLTAQK 128 Query: 117 AFFDVLTQYSIECLVR 132 + L Q +I LVR Sbjct: 129 RMEEALAQQTILDLVR 144 >gi|49081590|gb|AAT50195.1| PA2692 [synthetic construct] Length = 175 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L++ A + + + +AE + L K+ L KAG+V G RGG R Sbjct: 9 EYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAATEGVRGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RPA++I++LDVV+A + + EC F + +C + +V+ A Sbjct: 69 LARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIHAVMLTAQK 128 Query: 117 AFFDVLTQYSIECLVR 132 + L Q +I LVR Sbjct: 129 RMEEALAQQTILDLVR 144 >gi|302560986|ref|ZP_07313328.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] gi|302478604|gb|EFL41697.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] Length = 160 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ D ++AEA + K++ L G++ RGR Sbjct: 13 MRLLRSTDLALRVLMRLAVAGDSSPTTREVAEAMDVPYTHAAKVVAELQHMGLLTARRGR 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GG+ L ++ +V++ E V +C + CPL +C L LR+A AFF Sbjct: 73 GGGLSLTEDGRAASVGALVRSFEGDGDVVDCEGTATSPACPLSSACRLRGALRRAQEAFF 132 Query: 120 DVLTQYSIECLVRN 133 L ++ +V + Sbjct: 133 ATLDPVTVADIVTD 146 >gi|15597888|ref|NP_251382.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107102215|ref|ZP_01366133.1| hypothetical protein PaerPA_01003266 [Pseudomonas aeruginosa PACS2] gi|116050677|ref|YP_790503.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891147|ref|YP_002440013.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235672|ref|ZP_04928995.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719] gi|254241118|ref|ZP_04934440.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192] gi|296388842|ref|ZP_06878317.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313107747|ref|ZP_07793927.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9948765|gb|AAG06080.1|AE004697_5 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115585898|gb|ABJ11913.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167603|gb|EAZ53114.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719] gi|126194496|gb|EAZ58559.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192] gi|218771372|emb|CAW27139.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310880429|gb|EFQ39023.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 174 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L++ A + + + +AE + L K+ L KAG+V G RGG R Sbjct: 9 EYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAATEGVRGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RPA++I++LDVV+A + + EC F + +C + +V+ A Sbjct: 69 LARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIHAVMLTAQK 128 Query: 117 AFFDVLTQYSIECLVR 132 + L Q +I LVR Sbjct: 129 RMEEALAQQTILDLVR 144 >gi|269961409|ref|ZP_06175773.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833786|gb|EEZ87881.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 141 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + + I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKEELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + +IT+ VV+ E V C C + +C L L KA AF Sbjct: 61 KNGGIRLLKAPKEITVGGVVRDLEPLDLV-NCSVEF---CHITPACRLKEKLAKAKMAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L +IE L+ + S + Sbjct: 117 AELDGCTIEELLSDNSEL 134 >gi|139438731|ref|ZP_01772215.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC 25986] gi|133775811|gb|EBA39631.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC 25986] Length = 189 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L A + + AE + F I LV+AGIVE++RG Sbjct: 29 MDISRKTDYALRMLAMLAEDPECLLSVRTAAEEVNVPYSFARSIQHGLVQAGIVESLRGV 88 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL D +TI VV+A + + +C A DC +G+C + A D Sbjct: 89 HGGMRLKVSPDDVTIRQVVEAVQGPMVMNDCTAPDG-DCARMGACCYHPLWAGAQALMRD 147 Query: 121 VLTQYSIECLVRNR 134 L S+ +V +R Sbjct: 148 YLDSVSLGDIVAHR 161 >gi|269836430|ref|YP_003318658.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter thermophilus DSM 20745] gi|269785693|gb|ACZ37836.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter thermophilus DSM 20745] Length = 143 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +YG+R ++ A ++ P ++ IA + +L +++ PL +AG+V + RG Sbjct: 1 MKVSTRGEYGMRAMVSLARMYGQGPVPLAAIASDSAVPAAYLEQLMGPLRRAGLVTSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSV---LRK 113 GG L RP ++ + +V + E C + D CP++ C +V +R Sbjct: 61 AHGGYELARPPAEVRVGEVYRVMEGPIAPMACVSEDSGDEDLCPIIDGCATRAVWIKVRD 120 Query: 114 ALNAFFDVLT 123 ++ A D T Sbjct: 121 SIAAALDSTT 130 >gi|226324474|ref|ZP_03799992.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758] gi|225206922|gb|EEG89276.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758] Length = 148 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 59/91 (64%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+ +K++ YG+R L+ ++++ + ++ IAE IS +L ++ L KAGI+++V+G Sbjct: 1 MNFSKKSRYGLRALIDLSVYSKESHVALAAIAERNSISPQYLEQVFAALRKAGIIKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L +PA +I++ ++++A E + + E Sbjct: 61 PQGGYLLAKPATKISVAEILRALEGDYLIEE 91 >gi|312126489|ref|YP_003991363.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776508|gb|ADQ05994.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor hydrothermalis 108] Length = 137 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 52/91 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +R++++ + I+E I + FL KI + L+KAGI+E+ RG+ Sbjct: 1 MRLTQASDYALRIVLHLSKKKGMVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + + IT+ DV+ A E + + C Sbjct: 61 NGGYILAKNPEDITMKDVILAVEGTLALNRC 91 >gi|262278963|ref|ZP_06056748.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259314|gb|EEY78047.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 157 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKANCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + S+ L+ +R +++ + Sbjct: 119 DYLAKISLADLI-SRDNVQTV 138 >gi|330992748|ref|ZP_08316692.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329760226|gb|EGG76726.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 151 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ RTDY RVL++ A + D I I+ IS L K++ L G+V RGR Sbjct: 5 MRLSLRTDYAFRVLIHLAANPDTRVTIRAISTLHRISHNHLMKVVHHLCLCGLVTGTRGR 64 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L P I + V++ E + F+A S + L + +A++AF Sbjct: 65 TGGIHLAMPPGHIMVGHVIRVMETQGEFMAGHAPSGDSRFLAADARPLRHLTARAMDAFM 124 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 VL SI+ LV + ++ + AG Sbjct: 125 AVLEDMSIQDLVGSPELVRSVCAAG 149 >gi|134101075|ref|YP_001106736.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004105|ref|ZP_06562078.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913698|emb|CAM03811.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora erythraea NRRL 2338] Length = 171 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 18/156 (11%) Query: 1 MHLTKRTDYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L++ ++G+ L+ A + +R S +AE + E +L K L L +AG++ Sbjct: 1 MKLSQGVEWGLHCTALIAQAPEDTALSRRS-LAEHHGLPEAYLAKHLNALTRAGLLTATP 59 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPL---VGSCGLTSVLR 112 G RGG RL RPA++IT+LDV+ A E F E P CG+ +V+ Sbjct: 60 GPRGGFRLARPAERITVLDVLDAVEGDAAPFVCQEIRQRGTGAVPPEKCTSPCGIAAVMA 119 Query: 113 KALNAFFDVLTQYSIECLV---------RNRSSIKK 139 +A A+ D L + +I LV RNR K Sbjct: 120 QAHEAWRDTLRRTTIADLVGQVPDDIRARNRERFSK 155 >gi|330821657|ref|YP_004350519.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373652|gb|AEA65007.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] Length = 177 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Query: 2 HLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 H++ +YG+ L+Y A + +AE + FL K+ L KAG+V G Sbjct: 3 HISTGVEYGLHCLLYLAEPASGMREASVRDLAELQGVPLDFLAKLFTKLHKAGLVIATEG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110 +GG L RPADQI++LDVV A + + EC F K G C + SV Sbjct: 63 AKGGFALARPADQISVLDVVSAIDGDKSLFECREVRERCAVFEGTKPAWATSGVCAIHSV 122 Query: 111 LRKALNAFFDVLTQYSIECLVRNRSS 136 +++A + L S+ + SS Sbjct: 123 MQQAEKKMRESLASQSLADIAERFSS 148 >gi|210608481|ref|ZP_03287857.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787] gi|210153057|gb|EEA84063.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787] Length = 144 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A H N P ++ IA+ +S +L ++ L KAGIV++++G Sbjct: 1 MKISTKGRYGLRALVDLAGHDNGEPIALASIAQRQKLSLNYLEQVFSVLRKAGIVKSLKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG RL + AD IT+ +V++ E F + + +A K Sbjct: 61 VNGGYRLAKKADDITVKEVLEVLEGKFSIVDEYAQEK 97 >gi|146295458|ref|YP_001179229.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409034|gb|ABP66038.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 137 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 52/91 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +R++++ + I+E I + FL KI + L+KAGI+E+ RG+ Sbjct: 1 MRLTQASDYALRIVLHLSKKKGVVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + + IT+ DV+ A E + + C Sbjct: 61 NGGYVLAKNPEDITMKDVILAVEGTLALNRC 91 >gi|117164556|emb|CAJ88102.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 152 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R L A +D P + IA+A I FL IL + + G+V + RG Sbjct: 1 MRISARADYAVRAALQLAASRDDGPLKAEAIADAQDIPHKFLEGILNDMRRGGLVLSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL +PA+ I+I DV++ E Sbjct: 61 GNGGYRLAKPAESISIADVIRTVE 84 >gi|332981928|ref|YP_004463369.1| BadM/Rrf2 family transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699606|gb|AEE96547.1| transcriptional regulator, BadM/Rrf2 family [Mahella australiensis 50-1 BON] Length = 149 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 7/129 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ ++ A+ + + P + +AE ISE +L +++ L KAG+V++VRG Sbjct: 1 MKLSTKGRYGLTAMLDLALNYGEEPVALKNVAERQGISEPYLEQLIAGLRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSV----LRKA 114 +GG L P D+IT+ DV++ E +C + + C C +T + +R + Sbjct: 61 AQGGYILAYPPDKITVGDVMRVLEGPLAPVDCVIENEPVSCEKADHC-VTRIIWEKIRDS 119 Query: 115 LNAFFDVLT 123 +N D +T Sbjct: 120 INQVVDSIT 128 >gi|118444398|ref|YP_878357.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium novyi NT] gi|118134854|gb|ABK61898.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium novyi NT] Length = 144 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 12/129 (9%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ AI + + P I IA+ ISEL+L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVRAMVDLAINYGESPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115 +GG L + I++ D++ E ++ C + + D CP T +L K + Sbjct: 61 AQGGYVLNKHPKDISVSDIINVLEGPIEISSCVDTGECDNMNVCP-------TRLLWKKI 113 Query: 116 NAFFDVLTQ 124 D +T+ Sbjct: 114 KKSIDKVTE 122 >gi|302866552|ref|YP_003835189.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|302569411|gb|ADL45613.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] Length = 145 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TD +R+ M A P R + ++A + + K++Q L + G++ T+R Sbjct: 1 MRLNRSTDMALRIAMLTAAS---PVRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIR 57 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GGV A IT+ VV+A E V +C + CPLV C L LR+A AF Sbjct: 58 GRSGGVAFAEHAGDITVGGVVRAFEGDGEVVDC---AQPVCPLVAECRLRGELRRAQAAF 114 Query: 119 FDVLTQYSIECLV 131 VL + LV Sbjct: 115 LAVLDGVRLGDLV 127 >gi|253577980|ref|ZP_04855252.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850298|gb|EES78256.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 135 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RV+ A+ + +S I E I+ F +KIL+ L KA IV+ RG Sbjct: 1 MFITRECDYAVRVVR--ALWGESRLSVSDICEKEAITAPFAYKILKKLQKAEIVKGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R D++T+ +V A + F+ EC K +C G GL ++ + L + D Sbjct: 59 HGGYSLNRGLDELTLYEVYSAIDPDMFIIECL-DPKYNCVRDGQDGLPCLVHRELLSVQD 117 Query: 121 VL 122 L Sbjct: 118 EL 119 >gi|153815582|ref|ZP_01968250.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756] gi|317502129|ref|ZP_07960308.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium 8_1_57FAA] gi|145847013|gb|EDK23931.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756] gi|316896474|gb|EFV18566.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium 8_1_57FAA] Length = 140 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 8/104 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + TDY +R++ + + NRI +I+EA S ++ IL+ L K G+VE + Sbjct: 1 MQLNRTTDYVVRIVYFLS----NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVI 56 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 RG +GG RL + D I++ DV+K E++ + +C + +C L Sbjct: 57 RGVKGGFRLKKRPDAISLFDVIKIMEDTICINQCLNEEE-NCNL 99 >gi|331090359|ref|ZP_08339241.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401244|gb|EGG80834.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium 3_1_46FAA] Length = 141 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 8/104 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + TDY +R++ + + NRI +I+EA S ++ IL+ L K G+VE + Sbjct: 1 MQLNRTTDYVVRIVYFLS----NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVI 56 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 RG +GG RL + D I++ DV+K E++ + +C + +C L Sbjct: 57 RGVKGGFRLKKRPDAISLFDVIKIMEDTICINQCLNEEE-NCNL 99 >gi|163786651|ref|ZP_02181099.1| transcriptional regulator, rrf2 family protein [Flavobacteriales bacterium ALC-1] gi|159878511|gb|EDP72567.1| transcriptional regulator, rrf2 family protein [Flavobacteriales bacterium ALC-1] Length = 136 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L+Y A P +IS+I+++ IS FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALVYLAKQKKRDPVQISEISKSENISRKFLESILLTLRKNGILGSKKGKN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + ++I + +++ E + C F DCP +C + +V+ K + Sbjct: 62 GGYYLLKEPNEIPMTSIMRLLEGPIAMVPCVSLNFYEKCDDCPDENACAVHNVMLKVRDN 121 Query: 118 FFDVLTQYSI 127 D+ ++ Sbjct: 122 TLDIFRNTTL 131 >gi|291551296|emb|CBL27558.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus torques L2-14] Length = 142 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 1/123 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ + + D + +IA ISE +L IL+ LV G + +RG Sbjct: 1 MIISTRGRYALRVMIDLSQQDPDSYTPLKEIAARQEISEKYLENILKSLVTQGFILGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + T+ ++ ATE S C H +C G C + K N Sbjct: 61 KGGGYRLTKSPGEYTLASILHATEGSLAAVACLEDHAPECARAGQCPTRPIWEKLDNLIE 120 Query: 120 DVL 122 D L Sbjct: 121 DYL 123 >gi|237737739|ref|ZP_04568220.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817] gi|229419619|gb|EEO34666.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817] Length = 140 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R YG++ L+Y A + RI +I++ IS +L +IL L I+E R Sbjct: 1 MKISTRVRYGLKALVYIADKSSENKLVRIKEISDEQGISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116 G GG RL + +IT+ + K +E V +C S HK C G+C + K N Sbjct: 61 GPNGGYRLAKEPKEITLHQLYKILDEEEKVIDCNESEEHKAVCS-DGTCSGKCIWGKLDN 119 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + +++ ++N+ I Sbjct: 120 AMTKILEETTLDEFIKNKDMI 140 >gi|323702206|ref|ZP_08113873.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] gi|323532893|gb|EGB22765.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] Length = 135 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 14/141 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISE------LFLFKILQPLVKAGIV 54 M L + TDY R ++Y + P ++ EA I+E FL KIL+ L ++GIV Sbjct: 1 MRLNQATDYAFRAVLYLS---RLP--AGEVVEAKTIAEDEQIPIRFLLKILRLLSQSGIV 55 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLR 112 E++RG GG +L + +ITI DVV+A E V C H +C G+ C L L Sbjct: 56 ESLRGVSGGYKLAKKPKEITIKDVVEAVEGPIEVNRCLI-HPAECNKNGTGFCPLHKALF 114 Query: 113 KALNAFFDVLTQYSIECLVRN 133 L Y E L ++ Sbjct: 115 SIRQVLNRELASYDFETLSKS 135 >gi|253578507|ref|ZP_04855779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850825|gb|EES78783.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 158 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ +H++ + IAE IS +L +++ L KAG+V++ RG Sbjct: 1 MKLSTRARYGLKALIDLGLHSENEAISLQSIAERQDISTSYLEQLMAMLKKAGLVKSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L +PAD+I++ +V++ E S A C Sbjct: 61 AYGGYQLGKPADEISVGEVLRVLEGSLEAAAC 92 >gi|294793415|ref|ZP_06758560.1| Rrf2 family protein [Veillonella sp. 6_1_27] gi|294455846|gb|EFG24211.1| Rrf2 family protein [Veillonella sp. 6_1_27] Length = 143 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKVTGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG L R +I++LDV++A E ++ C VGSC Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99 >gi|17232043|ref|NP_488591.1| hypothetical protein alr4551 [Nostoc sp. PCC 7120] gi|17133687|dbj|BAB76250.1| alr4551 [Nostoc sp. PCC 7120] Length = 145 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H D P +I QIA I + +L ++L L + GI+ + R Sbjct: 1 MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G RGG L R +I+I ++++ E E E S +D ++ + ++A Sbjct: 61 GSRGGYFLAREPRKISIFEILECLEGLEVKTSEENLKSQTLDASVI-----EEIWQEARQ 115 Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140 A VL +YS++ L R S +++ Sbjct: 116 AANSVLKKYSLQDLCEKRDSRRQL 139 >gi|27364702|ref|NP_760230.1| transcriptional repressor NsrR [Vibrio vulnificus CMCP6] gi|37681247|ref|NP_935856.1| transcriptional repressor NsrR [Vibrio vulnificus YJ016] gi|320155095|ref|YP_004187474.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus MO6-24/O] gi|81448739|sp|Q8DCU1|NSRR_VIBVU RecName: Full=HTH-type transcriptional repressor nsrR gi|81859821|sp|Q7MH10|NSRR_VIBVY RecName: Full=HTH-type transcriptional repressor nsrR gi|27360847|gb|AAO09757.1| Nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus CMCP6] gi|37199998|dbj|BAC95827.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] gi|319930407|gb|ADV85271.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus MO6-24/O] Length = 141 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + ++ I+ + E +S + K++ L + ++TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPDNEQTNITDVTELFGVSRNHMVKVINRLGQLNYIQTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL RPA I + +VV+ E V C C + +C L L +A AF Sbjct: 61 KNGGIRLNRPAKTILVGEVVRDLEPLDLV-NCSVEF---CHITPACRLKERLYRAKLAFL 116 Query: 120 DVLTQYSIECLVRNRSSI 137 L SI L+ + + + Sbjct: 117 AELDDCSIAELLDDNAEL 134 >gi|210631991|ref|ZP_03297156.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279] gi|210159793|gb|EEA90764.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279] Length = 176 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L A D + AE+ + F I LV+AGI+E++RG Sbjct: 16 MDISRKTDYALRMLSMLAEGEDCLLSVRTAAESVDVPYSFARSIQHGLVQAGIIESLRGV 75 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL +TI +V+A + + +C A + CP + C + A Sbjct: 76 RGGMRLKVDPKDVTIRQIVEAVQGPLVMNDCTAENGA-CPRMDGCCYHPLWVGAQELLRS 134 Query: 121 VLTQYSIECLVRNR 134 L +++ +V NR Sbjct: 135 YLDSITLDDIVNNR 148 >gi|332975848|gb|EGK12726.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437] Length = 210 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 + +K TDY + L++ A H+++ I +++ + +SE +L KI+ L + GIV V Sbjct: 51 IQFSKSTDYALHALIHLA-HSEHRRNIGIKELSASLGVSESYLSKIMSKLRRDGIVRAVP 109 Query: 59 GRRGGVRLCRPADQITILDVVKATE--ESFF-------------VAECFASHKIDCPLVG 103 G GG L RPA QIT L+V+ E +S F E A DC Sbjct: 110 GVNGGYELARPAGQITFLEVIHVIEGRQSLFECSTLNSKQHRLLAEERAADRDRDCQGNS 169 Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131 C + V+ A + L +++I+ ++ Sbjct: 170 ECLVKKVMDGAEQHLYQYLREHTIQSVL 197 >gi|254384664|ref|ZP_05000003.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194343548|gb|EDX24514.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ + D P +A + K++ L G++E RG Sbjct: 13 MRLTRFTDLALRVLMRLAVADADLPT-TRDVAATMEVPYTHSAKVVARLRHLGLIEARRG 71 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ++ VV+ E + V +C + CPL G+C L LR A AFF Sbjct: 72 RGGGLALTAAGRAASVGGVVRELEGAGDVVDC--DGAVPCPLRGACVLRGALRGAQEAFF 129 Query: 120 DVLTQYSIECLV 131 L ++ LV Sbjct: 130 AALDPLTVNDLV 141 >gi|157363012|ref|YP_001469779.1| BadM/Rrf2 family transcriptional regulator [Thermotoga lettingae TMO] gi|157313616|gb|ABV32715.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga lettingae TMO] Length = 134 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T +++Y ++L+ A + P +S I + + F KI+ L +AGI+E+ RG Sbjct: 1 MGITIKSEYAFKILLQIANCQANEPVSLSLILTDVNVPKEFAEKIMVSLKEAGIIESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 R+GG RL + ADQIT L++V+A ++ + +C Sbjct: 61 RKGGYRLTKSADQITALEIVRAVDDPDKLIKC 92 >gi|206900600|ref|YP_002250996.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] gi|206739703|gb|ACI18761.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] Length = 138 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ R+ YG+R L+Y A + D P + +IAEA I +L +I++ L + V Sbjct: 1 MKLSTRSRYGLRALIYIAKNQKEDSPVSVRKIAEAEEIPLRYLERIMRILSQKNYVRAEV 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + I ILDVV+A E + +C H + C + SC + + + Sbjct: 61 GAEGGYYLNISPENIRILDVVEALEGRINLVDCL--HGVKCKRMPSCPTRPLWIEMTKSL 118 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + L +Y++ ++ IK Sbjct: 119 KETLAKYTLADFLKEEEKIK 138 >gi|315186439|gb|EFU20199.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6578] Length = 155 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + Y IR ++ A+ + P I +IAE IS FL +I L K GI+++VRG Sbjct: 1 MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKVGIIDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG L RP + ITI D+ A +E + C P Sbjct: 61 PGGGFVLSRPLESITIKDIFDAVDEGLGITPCTEEEGKSGP 101 >gi|315502962|ref|YP_004081849.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|315409581|gb|ADU07698.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 145 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TD +R+ M A P R + ++A + + K++Q L + G++ T+R Sbjct: 1 MRLNRSTDMALRIAMLTAAS---PVRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIR 57 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GGV A IT+ VV+A E V +C + CPLV C L LR+A AF Sbjct: 58 GRSGGVAFAEHAGDITVGRVVRAFEGDGEVVDC---AQPVCPLVAECRLRGELRRAQAAF 114 Query: 119 FDVLTQYSIECLV 131 VL + LV Sbjct: 115 LAVLDGVRLGDLV 127 >gi|330466710|ref|YP_004404453.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809681|gb|AEB43853.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora maris AB-18-032] Length = 146 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +R+ M A + ++A+ + + K++Q L G++ T+RGR Sbjct: 1 MKLNRSTDMAMRIAMLTAASGRR-TTVDELAQRLALPRNHVAKVVQRLQHLGVLVTIRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV T+ VV+A E V +C A CPL +C L LR+A AF Sbjct: 60 SGGVAFAADGATYTVGQVVRAFEGDGEVVDCEAPA---CPLRAACRLRIELRRAQEAFLA 116 Query: 121 VLTQYSIECLV 131 VL + S+ LV Sbjct: 117 VLDRVSLADLV 127 >gi|294629169|ref|ZP_06707729.1| Rrf2 family protein [Streptomyces sp. e14] gi|292832502|gb|EFF90851.1| Rrf2 family protein [Streptomyces sp. e14] Length = 155 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVET 56 M ++ R DY +R ++ A+ H D P + IA IS FL IL L +AG+V + Sbjct: 1 MRISARADYAVRAVLELAVRHGDAPEAPVKAETIAAEQGISHKFLEGILGDLRRAGVVTS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE 83 RG GG L RPA IT+ DV++A + Sbjct: 61 RRGGGGGYALARPASAITVADVIRAVD 87 >gi|218134234|ref|ZP_03463038.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC 43243] gi|217991609|gb|EEC57615.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC 43243] Length = 144 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A++N+ P R+ I++ IS+ +L +I+ L KAG V ++RG Sbjct: 1 MKISTRGRYALRMMLDLAVNNNGEPIRLKDISKRQGISDKYLEQIISILNKAGFVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 +GG L R + T+ +++ TE S C DC C +T +L + LN A Sbjct: 61 PQGGYMLNREPKEYTVGMILRLTEGSLAPVACLDYEPNDCERRNEC-VTLILWEKLNDAI 119 Query: 119 FDVLTQYSIECLVR 132 V+ +++ LV+ Sbjct: 120 KSVVDNITLQDLVQ 133 >gi|282849988|ref|ZP_06259370.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|282580177|gb|EFB85578.1| Rrf2 family protein [Veillonella parvula ATCC 17745] Length = 143 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG L R +I++LDV++A E ++ C VGSC Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99 >gi|23015106|ref|ZP_00054893.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 128 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TD+ IR+L+Y + H D + ++AE IS L KI++ L G ++TVRG+ Sbjct: 1 MKITQFTDFSIRLLIYLSRHRDRVVTVREVAEYYGISAEHLKKIVRSLADLGHLQTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I I + + +E+ + C CP + C L ++ AL AF Sbjct: 61 HGGLRLAREPRDIDIGRLFR-QQENLALLPCHEPCD-GCP-IDDCRLRGLVDNALAAFLA 117 Query: 121 VLTQYSI 127 V S+ Sbjct: 118 VFDGKSL 124 >gi|269797540|ref|YP_003311440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Veillonella parvula DSM 2008] gi|269094169|gb|ACZ24160.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula DSM 2008] Length = 143 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG L R +I++LDV++A E ++ C VGSC Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99 >gi|239932920|ref|ZP_04689873.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 152 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R L A D P + I++A I FL IL + + G+V + RG Sbjct: 1 MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL +PA+ ITI DV++ + Sbjct: 61 GNGGYRLAKPAESITIADVIRTVD 84 >gi|226197420|ref|ZP_03792997.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] gi|225930799|gb|EEH26809.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] Length = 142 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I +I++A IS+ L K++Q L + G +ETVRGR GG+RL + +T+ +VV+ TE F Sbjct: 4 IQEISDAYGISKNHLMKVVQQLGELGWIETVRGRNGGLRLNAQSVTLTVGEVVRKTENDF 63 Query: 87 FVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + CFA SH+ C + +C L V A AFF L +++I L + S + + Sbjct: 64 ALVGCFAGESESHR-SCVIQSACRLRGVFAAAREAFFAELDKHTIGELAQPASQLATLLG 122 >gi|313682502|ref|YP_004060240.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313155362|gb|ADR34040.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 141 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 RI +I+E+ + FL K LQ LV AGI+ ++RG GGV L +PA +IT+L ++ A + S Sbjct: 26 RIQEISESLELPYHFLSKSLQKLVHAGILVSLRGASGGVSLSKPASEITLLSIIDAVDGS 85 Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 F C DC C AL+A +DV Q +E Sbjct: 86 VFFDTCVLGIG-DCEAEKPC--------ALHAQWDVWRQEMLE 119 >gi|302562103|ref|ZP_07314445.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] gi|302479721|gb|EFL42814.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] Length = 151 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L K G+V + RG Sbjct: 8 MHISAKADYATRALLELAREPARPLTCEAIASSQQIPFRFLKSVVGELRKGGLVRSQRGC 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 GG L RPA++IT+LD+ +A + + +D P + GL V R+ Sbjct: 68 EGGYWLGRPAEEITLLDISRAVDGELLTLRGESPATLDYPGA-AAGLPDVWRR 119 >gi|291441270|ref|ZP_06580660.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291344165|gb|EFE71121.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 154 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R L A D P + I++A I FL IL + + G+V + RG Sbjct: 3 MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL +PA+ ITI DV++ + Sbjct: 63 GNGGYRLAKPAESITIADVIRTVD 86 >gi|294102885|ref|YP_003554743.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] gi|293617865|gb|ADE58019.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] Length = 141 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 ++AEA +SE L K+ Q LV+ G V + RG GG L RPA+ I++LD+ +A E Sbjct: 32 EMAEAINVSEAHLAKVFQRLVRCGFVTSSRGPGGGFELARPAESISLLDIYEAIEGQTDG 91 Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 C H+ +CP +C +L+K D L + ++ L R Sbjct: 92 GYCLL-HQKECPFR-TCIFGDMLKKMTKEIRDFLREKNLSELARGE 135 >gi|114321038|ref|YP_742721.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114227432|gb|ABI57231.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola ehrlichii MLHE-1] Length = 158 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + +M A+H P ++ I+E+ IS +L ++ L K +V VRG Sbjct: 1 MKLSTKGRYAVTAMMDLALHEGQGPVTLADISESQGISLSYLEQLFARLRKHSLVSGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL +PADQITI D++ A +E+ C Sbjct: 61 PGGGYRLAQPADQITIADIITAVDENVDATRC 92 >gi|325122066|gb|ADY81589.1| hypothetical protein BDGL_001003 [Acinetobacter calcoaceticus PHEA-2] Length = 157 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + S+ L+ +R +++ + Sbjct: 119 DYLAKISLADLI-SRDNVQTV 138 >gi|299770352|ref|YP_003732378.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter sp. DR1] gi|298700440|gb|ADI91005.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter sp. DR1] Length = 157 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + S+ L+ +R +++ + Sbjct: 119 DYLAKISLADLI-SRDNVQTV 138 >gi|293608203|ref|ZP_06690506.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828776|gb|EFF87138.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 161 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 5 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 65 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 122 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + S+ L+ +R +++ + Sbjct: 123 DYLAKISLADLI-SRDNVQTV 142 >gi|225570988|ref|ZP_03780011.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM 15053] gi|225160450|gb|EEG73069.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM 15053] Length = 129 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY IR+L A+ + + + I + I E F +KI++ L KAGIVE RG Sbjct: 1 MLLTRENDYAIRMLR--AMRDGQKHTMKDICQEEEIPEAFAYKIVRKLQKAGIVEVERGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG R+ R ++T+ DVV A +E + C Sbjct: 59 AGGCRMGRSLTELTLYDVVAAVDEEPVIMPCL 90 >gi|253682230|ref|ZP_04863027.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum D str. 1873] gi|253561942|gb|EES91394.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum D str. 1873] Length = 144 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ AI +++ P I IA ISEL+L ++ PL KA ++++VRG Sbjct: 1 MKLSTKGRYGVRAMVDLAINYSESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ D++ E ++ C S +C + C + K N+ Sbjct: 61 AQGGYVLSKHPKEISVSDIIDVLEGPIEISSCIDSG--ECNNMEVCPSRLLWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V +++ + + +K Sbjct: 119 EVTKSITLQDMANDYKRLK 137 >gi|75908723|ref|YP_323019.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702448|gb|ABA22124.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis ATCC 29413] Length = 145 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H D P +I QIA I + +L ++L L + GI+ + R Sbjct: 1 MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G RGG L R +I+I ++++ E E E S +D ++ + ++A Sbjct: 61 GSRGGYFLAREPRKISIFEILECLEGLEVKTSEENLKSQTLDGSVI-----EEIWQEARQ 115 Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140 A VL +YS++ L R S +++ Sbjct: 116 AANSVLKKYSLQDLCEKRDSRRQL 139 >gi|269839251|ref|YP_003323943.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] gi|269790981|gb|ACZ43121.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] Length = 153 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 47/83 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T R DY +R + A P + QI+EA I FL IL L +AG+V T RG+ Sbjct: 1 MHITARADYALRAAIEMAASWPQPLKGEQISEAQDIPIKFLESILLDLKRAGLVRTQRGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L R +I++ D+++A E Sbjct: 61 AGGYWLGREPAEISLADIIRAVE 83 >gi|268317559|ref|YP_003291278.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] gi|262335093|gb|ACY48890.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] Length = 142 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 8 DYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +YG+R ++Y A +++D I +I E IS FL KI Q L +AG+++++RG GGV Sbjct: 7 EYGLRAVLYLASLNHDGYVSIREIGERLNISVPFLTKIFQKLTQAGLMQSLRGPSGGVMF 66 Query: 67 CRPADQITILDVVKATEESFFVAEC 91 R ++IT+ DV+ A + EC Sbjct: 67 ARSPEEITLFDVIVAIDGPDLFTEC 91 >gi|296140570|ref|YP_003647813.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Tsukamurella paurometabola DSM 20162] gi|296028704|gb|ADG79474.1| transcriptional regulator, BadM/Rrf2 family [Tsukamurella paurometabola DSM 20162] Length = 159 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%) Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 VL++ D P S++AE+ + +L K LQ L +AGI E++ GRRGG+RL R Sbjct: 15 VLLHWLDEGDLTPVPASRLAESYDLPPAYLGKQLQALARAGITESLPGRRGGIRLARSTA 74 Query: 72 QITILDVVKATEESFFVAECFASHKI-------DCP---LVGSCGLTSVLRKALNAFFDV 121 +IT++DVV A E ++ FA +I D P CG+ +R A ++ Sbjct: 75 EITLMDVVSAIEGP---SDAFACTEIRQRGMNSDNPRSDFTAPCGIAHAMRGAELSWRRE 131 Query: 122 LTQYSIECLV 131 L SI L Sbjct: 132 LAATSIADLA 141 >gi|294795234|ref|ZP_06760368.1| Rrf2 family protein [Veillonella sp. 3_1_44] gi|294454026|gb|EFG22401.1| Rrf2 family protein [Veillonella sp. 3_1_44] Length = 143 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEHELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG L R +I++LDV++A E ++ C VGSC Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99 >gi|313634571|gb|EFS01056.1| putative transcriptional regulator [Listeria seeligeri FSL N1-067] Length = 138 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +PA I+ LDV++A E C + + C + V+ A+ Sbjct: 61 VNGGYKLAKPATNISFLDVIQAIEGKTAFFHCDPKNHAETK--SHCLIGEVMGNAVQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ +I +V Sbjct: 119 DYLSKQTIGSIV 130 >gi|88608399|ref|YP_506194.1| rrf2/aminotransferase, class V family protein [Neorickettsia sennetsu str. Miyayama] gi|88600568|gb|ABD46036.1| rrf2/aminotransferase, class V family protein [Neorickettsia sennetsu str. Miyayama] Length = 530 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT +T Y I + A+H+ + S+IA ISE FL IL PL K GI+E++ G Sbjct: 10 LTAKTRYAIAASIDIALHSKGRKYVKTSEIASRQKISEKFLELILPPLKKQGILESLLGP 69 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG RL + D I ++ ++KA ++ + C + C + L VL K N Sbjct: 70 GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 129 Query: 117 AFFDVLTQYSI 127 FF+ +T I Sbjct: 130 NFFESVTLQDI 140 >gi|313894575|ref|ZP_07828138.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon 158 str. F0412] gi|313440765|gb|EFR59194.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon 158 str. F0412] Length = 162 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56 M L + TDY R++++ A+ P+ + +AE I E FL KI++ L+ AGI+++ Sbjct: 1 MKLNQATDYAFRMVLHMAM---LPSGTKITGAVLAEQELIPERFLLKIMRSLIAAGIMKS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 RG GG L R +I++LDV++A E ++ C VGSC Sbjct: 58 FRGVDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99 >gi|253580123|ref|ZP_04857390.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848642|gb|EES76605.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 144 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+HN +I I+ ISE +L +I+ L KAG V+++RG Sbjct: 1 MQISTKGRYALRLMLDLAVHNTGELVKIKDISARENISEKYLEQIISSLKKAGYVKSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG L R + T+ +++ TE S C C G C L +L +A+ Sbjct: 61 AQGGYMLAREPETYTVGTILRLTEGSMKPVACLEDEPNQCSRAGECVTLRLWKMLDEAIE 120 Query: 117 AFFDVLT 123 D +T Sbjct: 121 GVLDKVT 127 >gi|110800338|ref|YP_696471.1| rrf2 family protein [Clostridium perfringens ATCC 13124] gi|169343592|ref|ZP_02864591.1| rrf2 family protein [Clostridium perfringens C str. JGS1495] gi|182625647|ref|ZP_02953416.1| rrf2 family protein [Clostridium perfringens D str. JGS1721] gi|110674985|gb|ABG83972.1| rrf2 family protein [Clostridium perfringens ATCC 13124] gi|169298152|gb|EDS80242.1| rrf2 family protein [Clostridium perfringens C str. JGS1495] gi|177909049|gb|EDT71524.1| rrf2 family protein [Clostridium perfringens D str. JGS1721] Length = 153 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH P I I++ ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+ D+++ E +++C + C V C + +K + Sbjct: 61 AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +V +++ +V + ++K+ Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138 >gi|78043860|ref|YP_361240.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995975|gb|ABB14874.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT+ TDY R ++Y A N +IA I FL KIL+ L +AGIV++ RG Sbjct: 5 MNLTQATDYAFRAVLYLARKGNGEVVEAQEIAGRENIPLRFLLKILRQLGQAGIVKSYRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L + ++IT+LDVV+A E + C Sbjct: 65 VGGGFSLAKDPEEITLLDVVEAVEGPVKINRCL 97 >gi|227549985|ref|ZP_03980034.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077937|gb|EEI15900.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 162 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 9/142 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + T++ L+ + D P +AE I + +L K LQ LV+AGI+ + G Sbjct: 1 MKLPRGTEWMAHCLVALSACEDIGPLAKHTLAEMFDIPDAYLSKQLQQLVRAGIIRSSAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAE------CFASHKIDCPLVGSCGLTSVL 111 RGG L RPA +T+LDV+K + FV E F + G CG+ + Sbjct: 61 NRGGYFLARPASTVTLLDVIKTVQGDAPLFVCEEVRCRGIFTNDADAIRETGPCGIHHAM 120 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 +A N + D L ++E L + Sbjct: 121 VEAENRWRDSLATVTVEALTQQ 142 >gi|302550950|ref|ZP_07303292.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302468568|gb|EFL31661.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 152 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ + +AE + L K++ L G++ RGR Sbjct: 9 MRLLRSTDLALRVLMRLAVAGESSPTTRDVAEGMDVPYTHLAKVVAELQHMGLLTARRGR 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ VV+A E V +C CPL +C L LR+A AFF Sbjct: 69 GGGLSLTERGRSASVGAVVRAFEGDGDVVDC--EGPTPCPLNSACRLRVALRRAQEAFFA 126 Query: 121 VLTQYSIECLV 131 L ++ +V Sbjct: 127 SLDPITVADIV 137 >gi|303228847|ref|ZP_07315660.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-134-V-Col7a] gi|303230326|ref|ZP_07317089.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-049-V-Sch6] gi|302515012|gb|EFL56991.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-049-V-Sch6] gi|302516467|gb|EFL58396.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-134-V-Col7a] Length = 150 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 12/138 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMILHMAMLPSGQKVTGGVLAEQEMIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I++LDV++A E ++ C VGSC + + A+N Sbjct: 61 VDGGFALNREPKDISMLDVIRAVEGDTYLQRCLYD-------VGSCSKACMGQCAVNEAM 113 Query: 120 DVLTQYSIECLVRNRSSI 137 V+ LVR S+ Sbjct: 114 SVVQAE----LVRQMESV 127 >gi|289767152|ref|ZP_06526530.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289697351|gb|EFD64780.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 148 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TD +R +M A+ D P ++AE + K + L G+VE R Sbjct: 1 MRLTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L + ++ +V+ E V +C + CPL G+C L LR A AF Sbjct: 61 GRGGGLTLTDLGRRASVGWLVRELEGEAEVVDCEGDNP--CPLRGACRLRRALRDAQEAF 118 Query: 119 FDVLTQYSIECLV 131 + L ++ LV Sbjct: 119 YAALDPLTVTDLV 131 >gi|331269734|ref|YP_004396226.1| BadM/Rrf2 family transcriptional regulator [Clostridium botulinum BKT015925] gi|329126284|gb|AEB76229.1| transcriptional regulator, BadM/Rrf2 family [Clostridium botulinum BKT015925] Length = 144 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ AI + + P I IA ISEL+L ++ PL KA ++++VRG Sbjct: 1 MKLSTKGRYGVRAMVDLAINYGESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ D++ E ++ C S +C + C + K N+ Sbjct: 61 AQGGYVLNKHPKEISVSDIIDVLEGPIEISSCIDSG--ECNNMEVCPTRLLWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V +++ + + +K Sbjct: 119 EVTQSITLQDMANDYKRLK 137 >gi|266623212|ref|ZP_06116147.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] gi|288865011|gb|EFC97309.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] Length = 144 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ A+H +I+Q+AE IS+ +L +I+ L +AG V+++RG Sbjct: 1 MKISTKGRYALRMMLEFALHPGECTKINQVAERQQISDKYLEQIVTILSRAGYVKSMRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNA 117 +GG L + T+ +++ TE S C C G C +V L +A+N Sbjct: 61 QGGYYLTKEPSDYTVGMILRLTEGSLAPVACMEDELNQCIRSGHCATLTVWKQLDQAING 120 Query: 118 FFDVLT 123 D +T Sbjct: 121 VVDNIT 126 >gi|73749368|ref|YP_308607.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1] gi|147669978|ref|YP_001214796.1| BadM/Rrf2 family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289433326|ref|YP_003463199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Dehalococcoides sp. GT] gi|73661084|emb|CAI83691.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1] gi|146270926|gb|ABQ17918.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp. BAV1] gi|288947046|gb|ADC74743.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp. GT] Length = 148 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R + + + A+H + P I +A+ ISE +L ++ PL AG+V +VRG Sbjct: 1 MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I + D+VKATE S +EC ++ C C +V + A Sbjct: 61 ANGGFVLARDPKEIKLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLRIKKATD 119 Query: 120 DVLTQYSIECLVRN 133 ++L +++ LV+ Sbjct: 120 EILDSINLDNLVQQ 133 >gi|225573521|ref|ZP_03782276.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM 10507] gi|225039118|gb|EEG49364.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM 10507] Length = 142 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A+H++ P I IA IS +L +++ + +AG+V +VRG Sbjct: 1 MKLSTKGRYGLRAMVDLAVHSETGPVSIQSIANRQDISVSYLEQLVGKMRRAGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG RL + +I++ DV++A E + +C + ++ C C V +K + Sbjct: 61 ATGGYRLAKSPSEISVGDVLRALEGTLDAVDCPGNLEVSTCKASQKCVTKYVWKKINESI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 + IE LV+ + Sbjct: 121 SQAVDTIMIEQLVQESKKV 139 >gi|301045949|ref|ZP_07193133.1| Rrf2 family protein [Escherichia coli MS 185-1] gi|300302032|gb|EFJ58417.1| Rrf2 family protein [Escherichia coli MS 185-1] Length = 112 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ + +S + KI+ L +AG V VRG+ GG+RL +PA I I DVV+ E Sbjct: 12 ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 V C + C + +C L L KA+ +F L Y++ LV Sbjct: 72 LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLV 112 >gi|94312314|ref|YP_585524.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356166|gb|ABF10255.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 155 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY + + P I+++ + IS L K+ L K G + RG Sbjct: 6 MQLTRFSDYALRLLMYVSRGDGSRPITIAEVGQQFDISHNHLVKVAARLSKLGWISATRG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L A+++++ +++ E + +C C L G+C L L A AF+ Sbjct: 66 RHGGLQLGPGAEKLSVGAILRELEGRKAIIDCA---DPPCALNGNCRLKRALDDAEEAFY 122 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ + +R++ Sbjct: 123 RALDGVTLADVSGSRTA 139 >gi|282896876|ref|ZP_06304882.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] gi|281198285|gb|EFA73175.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] Length = 145 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H N P +I QIA I + +L ++L L + GI+++ R Sbjct: 1 MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG-LTSVLRKALN 116 G +GG L R +IT+LD+++ E +AE + P G + + ++A Sbjct: 61 GSKGGYLLAREPRKITVLDILECLEGLDIKIAEDNTN-----PKTADSGIIDEIWQEARQ 115 Query: 117 AFFDVLTQYSIECLVRNRS 135 A VL +YS+E L R+ Sbjct: 116 AANLVLEKYSLEDLCEKRT 134 >gi|119357736|ref|YP_912380.1| BadM/Rrf2 family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119355085|gb|ABL65956.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides DSM 266] Length = 141 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 +H++++ +YG+ + Y A R+ ++A+ S+ FL K +Q L KAGI+ +V Sbjct: 2 LHVSRKFEYGLHAVSYLATRG--AGRVVTVKEMADDIGFSQEFLSKAMQSLKKAGIIASV 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +G +GG L +P IT+ D+ +A E + C + + C + C + N Sbjct: 60 QGVKGGYTLAKPLSGITVADIGEAIEGKPHLTRC--ASDLYCEIASKCTHKQYMNLLQNK 117 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 + + ++E L+ S+ ++ Sbjct: 118 IQEFMGATTLETLIEGDDSLPQL 140 >gi|220929352|ref|YP_002506261.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium cellulolyticum H10] gi|219999680|gb|ACL76281.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulolyticum H10] Length = 148 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A H + IAE +SE +L ++ L K+G+V+++RG Sbjct: 1 MKVSTKGRYGLRAIVDLAAHESEGQVSLKSIAERQNLSENYLEQLFSSLKKSGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSV---LRKAL 115 +GG L R AD++T+ D++++ E + +C +C C V +R + Sbjct: 61 AQGGYLLARTADKMTVGDILRSLEGTLCPVDCIDPDVPSNCDRADECVTVDVWAKIRDKV 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141 N D +T + + N+S+ I+ Sbjct: 121 NEVVDSITLADLVSELENKSNNDYIY 146 >gi|78355282|ref|YP_386731.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217687|gb|ABB37036.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 220 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ RT Y R+L+ A H D P S ++E +S F+ +I++PL KA ++ +VRG Sbjct: 52 MKLSARTRYAARLLLDLAQHATDAPRTASALSEQTGVSVQFIEQIIKPLKKAKLINSVRG 111 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-------LTSVLR 112 GG L R +IT+ +V E + +C +++ C +C ++ VL Sbjct: 112 AAGGHMLSRAPSEITLAQIVDVMEGGIRLTDCCTDNEL-CTRTPTCKTRVAWLRISEVLE 170 Query: 113 KALNAF 118 + LN+ Sbjct: 171 RELNSI 176 >gi|295094646|emb|CBK83737.1| rrf2 family protein (putative transcriptional regulator) [Coprococcus sp. ART55/1] Length = 144 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 69/135 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ +I++ + +A C +S+ +L ++ L+KAG + +VRG Sbjct: 1 MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL PA++IT+ V++A E + D +V + + V +A + Sbjct: 61 RGGYRLNMPAEEITVGMVLRAIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLESAINN 120 Query: 121 VLTQYSIECLVRNRS 135 VL +I L R S Sbjct: 121 VLDNKTIADLTREYS 135 >gi|83310381|ref|YP_420645.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945222|dbj|BAE50086.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 128 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TD+ IR+L+Y + H D + ++AE IS L KI++ L + G ++TVRG+ Sbjct: 1 MKITQFTDFSIRLLIYLSRHPDRVVTVREVAEYYDISAEHLKKIVRSLAELGHIQTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I + + + +E+ + C CP + C L ++ AL AF Sbjct: 61 HGGLRLGREPQAIDLGHLFR-QQENLALLPCHEPCD-SCP-IADCRLRGLVDSALAAFLA 117 Query: 121 VL 122 V Sbjct: 118 VF 119 >gi|197303190|ref|ZP_03168232.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC 29176] gi|197297730|gb|EDY32288.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC 29176] Length = 151 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A +++ P I+ I++ ISE +L +++ L KAGIV+++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEETPVSITSISKRQDISERYLEQLMSMLKKAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A +I++ +V++A E S EC Sbjct: 61 ANGGYILARDAKEISVGEVLRALEGSLEPVEC 92 >gi|184157980|ref|YP_001846319.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|213157174|ref|YP_002319219.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057] gi|215483548|ref|YP_002325767.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|239501899|ref|ZP_04661209.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB900] gi|260555142|ref|ZP_05827363.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter baumannii ATCC 19606] gi|301345048|ref|ZP_07225789.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB056] gi|301510365|ref|ZP_07235602.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB058] gi|301595498|ref|ZP_07240506.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB059] gi|332851744|ref|ZP_08433669.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013150] gi|332865881|ref|ZP_08436661.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013113] gi|332874439|ref|ZP_08442342.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6014059] gi|183209574|gb|ACC56972.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|193077275|gb|ABO12061.2| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978] gi|213056334|gb|ACJ41236.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057] gi|213987411|gb|ACJ57710.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|260411684|gb|EEX04981.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter baumannii ATCC 19606] gi|322508298|gb|ADX03752.1| iscR [Acinetobacter baumannii 1656-2] gi|323517924|gb|ADX92305.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332729751|gb|EGJ61086.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013150] gi|332734931|gb|EGJ66017.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013113] gi|332737283|gb|EGJ68207.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6014059] Length = 157 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + ++ L+ +R +++ + Sbjct: 119 DYLAKITLANLI-SRDNVQTV 138 >gi|296272138|ref|YP_003654769.1| BadM/Rrf2 family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096313|gb|ADG92263.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter nitrofigilis DSM 7299] Length = 133 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 8/129 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+++Y + L+ A +D + +++ I + FL KI+Q L K IV + RG Sbjct: 1 MLLTKKSEYALLSLISIA-KSDKAKNVDELSRELRIPKSFLAKIMQNLAKNEIVISQRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L +P DQ+TI + A EE V EC S CP L L + L+ Sbjct: 60 NGGFILAKPYDQLTIFSITAAAEEKIPSVFECAPSMD-SCPSESGSLCSIWPLLNNLQGK 118 Query: 115 LNAFFDVLT 123 +N F + LT Sbjct: 119 INEFLEELT 127 >gi|254796684|ref|YP_003081520.1| Rrf2/aminotransferase, class V family protein [Neorickettsia risticii str. Illinois] gi|254589924|gb|ACT69286.1| Rrf2/aminotransferase, class V family protein [Neorickettsia risticii str. Illinois] Length = 522 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT +T Y I + A+H+ + S+IA ISE FL IL PL K GI+E++ G Sbjct: 2 LTAKTRYAIVASIDIALHSKGRKYVKTSEIASRQKISEKFLEVILPPLKKQGILESLLGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG RL + D I ++ ++KA ++ + C + C + L VL K N Sbjct: 62 GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 121 Query: 117 AFFDVLTQYSI 127 FF+ +T I Sbjct: 122 NFFESVTLQDI 132 >gi|283852450|ref|ZP_06369719.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283572188|gb|EFC20179.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 150 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A P IA++ I + FL IL L + G V++ RG Sbjct: 1 MAVTQKCQYALRALFELARRKGQGPVPAGGIADSQAIPKRFLEVILHQLRQGGFVDSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118 + GG L RPA +T+ +V++ + +C DCPL G C + A A Sbjct: 61 KEGGFYLARPAASVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGRCVFRGLWDDARAAL 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V ++E LV ++ Sbjct: 121 VQVYDTRTLEDLVEEERRLE 140 >gi|194333370|ref|YP_002015230.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311188|gb|ACF45583.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris aestuarii DSM 271] Length = 160 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 50/90 (55%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LTK TDY IR L+ A H + +IAE I FL +LQ LV+AG + + G G Sbjct: 4 LTKHTDYAIRALLTLAGHGEGYLSARRIAEEQQIPYQFLRGLLQELVRAGFISSREGAHG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92 GV+L + + I++ +V+ + S ++EC Sbjct: 64 GVKLIKDPETISVREVIALFQGSIELSECM 93 >gi|302532532|ref|ZP_07284874.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. C] gi|302441427|gb|EFL13243.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. C] Length = 152 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R L A +D P + IA+A I FL IL + + G+V + RG Sbjct: 1 MRISARADYAVRAALQLAASQDDGPLKAEAIADAQEIPHKFLEGILNDMRRGGLVLSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL RPA I+I DV++ + Sbjct: 61 GNGGYRLARPARSISIADVIRVVD 84 >gi|160937566|ref|ZP_02084927.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC BAA-613] gi|158439635|gb|EDP17385.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC BAA-613] Length = 135 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY IR++ A+ + + QI + + + F +KIL+ L ++G+V RG Sbjct: 1 MMITRESDYAIRIIR--ALKDGELLPLEQICQRELVPKQFAYKILKKLERSGLVSIRRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG L R +T+LD++KA +E FF+ C S Sbjct: 59 GGGCILNRSLADLTLLDIIKAADEEFFLNPCLDSQ 93 >gi|56751534|ref|YP_172235.1| hypothetical protein syc1525_d [Synechococcus elongatus PCC 6301] gi|81301394|ref|YP_401602.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686493|dbj|BAD79715.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81170275|gb|ABB58615.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus elongatus PCC 7942] Length = 171 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ C D P + IA+ IS L K+L L KAG+V +G Sbjct: 26 MKLTVRAHYSLKALIDLCLQPEDEPVSMRAIAQRQNISPTLLEKLLVELCKAGLVTATKG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 RRGG +L RPA +I++ D++ A E Sbjct: 86 RRGGYQLARPAAKISLADILAAVGE 110 >gi|329934459|ref|ZP_08284538.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] gi|329306055|gb|EGG49910.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] Length = 152 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYATRALLELAREPSRPLTCEAIASSQHIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA+ IT+LDV A + +D P S GL +V R+ Sbjct: 61 EGGYWLGRPAEAITLLDVAHAVDGELITLRGEPLTGLDYPGPAS-GLPAVWRRIEEEAAA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 +L ++ L+ +S +G Sbjct: 120 LLRSTTLTSLLPGEASAPLPAGSG 143 >gi|302388919|ref|YP_003824740.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] gi|302199547|gb|ADL07117.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] Length = 135 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETV 57 M L + TDY R +++ + P + + IAE I F+ KIL+ L +AGIV++ Sbjct: 1 MKLNQATDYAFRAVLH--LSKLPPGEVVEARVIAEQEHIPMRFMLKILRLLTQAGIVKSY 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALN 116 RG GG L + IT+ DVV+A E ++ C A + + C + L Sbjct: 59 RGVGGGYALAKMPRDITMRDVVEAVEGPVYINRCLIAPEECNKRSTAKCSIHKALFSIQQ 118 Query: 117 AFFDVLTQYSIECLVRN 133 D L +Y+ E L +N Sbjct: 119 TINDKLEEYNFEILSKN 135 >gi|164686973|ref|ZP_02211001.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM 16795] gi|164603858|gb|EDQ97323.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM 16795] Length = 147 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + Y +R+++ AI++D RI IA+ IS+ +L +I+ L +AG +++VRG Sbjct: 4 LKISTKGRYALRLMIDLAINDDGKCIRIRDIAKRQEISDKYLEQIISILNRAGYIKSVRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + + T+ +++ TE S C C C + +K A Sbjct: 64 PQGGHRLAKHPSEYTVGMILRLTEGSLSPVACLDDEVNQCTRQAQCATLELWKKLDKAIS 123 Query: 120 DVLTQYSIECLVR 132 DV+ ++E LV+ Sbjct: 124 DVVDNVTLEDLVQ 136 >gi|167465258|ref|ZP_02330347.1| possible transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 139 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L RPA+QIT +++ E Sbjct: 61 AYGGYILSRPAEQITTGQIIRVLE 84 >gi|290968345|ref|ZP_06559886.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781620|gb|EFD94207.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 153 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 7/96 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56 M L + TDY R+++Y A +P + +A+ I E FL KI++ L AGI+++ Sbjct: 1 MKLNQATDYAFRMVLYLA---SFPEGTKVTGAALADKQNIPERFLLKIMRSLTAAGIMKS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 RG GG L R A +IT+ D+++A E + C Sbjct: 58 YRGVEGGFSLNRSAKEITLFDIIEAVEGQTELQRCL 93 >gi|32476776|ref|NP_869770.1| hypothetical protein RB11077 [Rhodopirellula baltica SH 1] gi|32447322|emb|CAD77148.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 155 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LMY A N ++ +A IS + K++ L + G V ++RG Sbjct: 15 MRLTTQTDYALRTLMYLATRESRAN-VAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 73 Query: 61 RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L RP D +T+ ++ E + C A C + C LT VL A Sbjct: 74 GGGIELAVRPED-VTVGQIIATVESDMHLLPCVAGDH-GCVIHSFCKLTGVLANAERIQM 131 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L ++ ++ R + + Sbjct: 132 DYLNSVTLAEVIPTRKQLDR 151 >gi|104781179|ref|YP_607677.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110166|emb|CAK14873.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 178 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 11/137 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L++ + + +AE + + +L K+ L +AG+V G RGG R Sbjct: 9 EYGIHCLLFLVDERGDSREASVRDLAELQGVPQEYLAKVFTKLARAGLVVATEGVRGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RP+D+IT+LD+V A + + + +C F G+C + +V+ A Sbjct: 69 LARPSDEITVLDIVTAIDGAKKIFDCREIRERCAVFEGSAPGWATEGTCAIHAVMLGAQK 128 Query: 117 AFFDVLTQYSIECLVRN 133 + L Q +I L R Sbjct: 129 RMEEALAQQTILDLARR 145 >gi|327539861|gb|EGF26464.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47] Length = 141 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LMY A N ++ +A IS + K++ L + G V ++RG Sbjct: 1 MRLTTQTDYALRTLMYLATRESRAN-VAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 59 Query: 61 RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L RP D +T+ ++ E + C A C + C LT VL A Sbjct: 60 GGGIELAVRPED-VTVGQIIATVESDMHLLPCVAGDH-GCVIHSFCKLTGVLANAERIQM 117 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L ++ ++ R + + Sbjct: 118 DYLNSVTLAEVIPTRKQLDR 137 >gi|301155741|emb|CBW15209.1| DNA-binding transcriptional repressor [Haemophilus parainfluenzae T3T1] Length = 151 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHAGTDPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL P DQI+I V+ A E+ V C K +C C S+ + + Sbjct: 61 PGGGYRLALPTDQISIGMVISAVNENINVTRCLG--KGNCQGGVECLTHSLWQDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV +S K Sbjct: 119 DFLDEITLAELVEKKSGKHK 138 >gi|206901224|ref|YP_002251262.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] gi|206740327|gb|ACI19385.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] Length = 144 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++ + +YG+R ++Y +YP+ +SQI++ IS FL +++ L +A ++E+ +G Sbjct: 4 VSAKLEYGLRAMIYLG--ENYPHEKVTLSQISQKENISREFLAQLMSDLRRANLIESYKG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +IT+ ++ +A E + +C C +C SV R Sbjct: 62 ITGGYTLTKPPKEITLKEIFEALEGPIQIIDCIHLEN-KCERENTCYSKSVWRFIEKKII 120 Query: 120 DVLTQYSIECLV 131 D+L + ++E L+ Sbjct: 121 DLLGKLTLEDLI 132 >gi|189499477|ref|YP_001958947.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] gi|189494918|gb|ACE03466.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] Length = 167 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 1/105 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LTK TDY IR L+ H QI++ I FL +ILQ L K G+ + G G Sbjct: 6 LTKNTDYAIRALLVLGTHEGEYVSARQISQQQGIPYQFLRRILQELNKNGLTTSREGAHG 65 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 GVRL + D I + DV++ + ++EC +I C SC L Sbjct: 66 GVRLEKNPDAIRVRDVIEIFQGKVELSECMFRKQI-CANRASCVL 109 >gi|260550152|ref|ZP_05824366.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406907|gb|EEX00386.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 157 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + ++ L+ +R +++ + Sbjct: 119 DYLAKITLADLI-SRDNVQTV 138 >gi|255318956|ref|ZP_05360181.1| putative transcriptional regulator [Acinetobacter radioresistens SK82] gi|262378308|ref|ZP_06071465.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter radioresistens SH164] gi|255303973|gb|EET83165.1| putative transcriptional regulator [Acinetobacter radioresistens SK82] gi|262299593|gb|EEY87505.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter radioresistens SH164] Length = 157 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARTADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + ++ LV Sbjct: 119 DYLAKITLADLV 130 >gi|294101175|ref|YP_003553033.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] gi|293616155|gb|ADE56309.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +T YG+R L+ D P I+ IA ISE +L ++ L + G++E+VR Sbjct: 1 MKLSTKTRYGLRALLELVRQYDGRTPLSITDIASKENISERYLEQLFLKLRRDGLIESVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R +IT+ +VV+ E + +A+C +C +C + + ++ Sbjct: 61 GPQGGYLLSRAPMEITVAEVVEVLEGNIQIADCLEGP--ECMRESACPARKLWLRLRDSI 118 Query: 119 FDVLTQYSIECLVRN 133 +VL +++ L+ + Sbjct: 119 DNVLVSTTLKDLIED 133 >gi|282882582|ref|ZP_06291201.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281297557|gb|EFA90034.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 135 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 48/93 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY R+ + A H + IAE C ++E F +IL+ L AGI RG Sbjct: 1 MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93 +GG L RP ++IT+ ++ A + + C Sbjct: 61 KGGYGLKRPKEEITLYQIICAIDGPTVINRCLG 93 >gi|303228671|ref|ZP_07315496.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-134-V-Col7a] gi|303231408|ref|ZP_07318141.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-049-V-Sch6] gi|302513916|gb|EFL55925.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-049-V-Sch6] gi|302516651|gb|EFL58568.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-134-V-Col7a] Length = 139 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H N I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGTEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 + GG RL + + + +++ A E+S + C CP+ C LT+ L + L + F Sbjct: 61 KYGGYRLVKDPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V+ + S++ ++ ++ ++ Sbjct: 120 RHVMERVSLQDVMDHKFPVE 139 >gi|225572497|ref|ZP_03781361.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM 10507] gi|225040037|gb|EEG50283.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM 10507] Length = 144 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 5/145 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RV+ A+ + ++ I E I+ F +KIL+ L KA IV RG Sbjct: 1 MLITRECDYAVRVIR--ALSGEERLSVNDICEREEITAPFAYKILKKLQKAKIVRGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG L + +IT+LDV A + ++ EC K D L G C + L + Sbjct: 59 HGGYSLKKSVSEITLLDVYLAIDPGMYIIECMNPKKKCCRDEKLDGGCEVHQELLRIQER 118 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 D+L++ S++ ++ +K+ Sbjct: 119 LQDMLSERSLQEILGESEKKEKVVG 143 >gi|160878171|ref|YP_001557139.1| BadM/Rrf2 family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426837|gb|ABX40400.1| transcriptional regulator, BadM/Rrf2 family [Clostridium phytofermentans ISDg] Length = 145 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI+N I IA IS+ +L +I+ L +AG V++ RG Sbjct: 1 MKISTKGRYALRLMLDLAINNTGEFITIKSIAGRQEISDKYLEQIITLLSRAGYVKSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + + T+ ++K E S C DC GSC V +K A Sbjct: 61 AQGGYRLTKEPKEYTVGMILKLIEGSLAPVSCVEEEDNDCNRYGSCATLFVYQKINEAVN 120 Query: 120 DVLTQYSIECLV 131 +V+ ++E LV Sbjct: 121 NVVDNITLEDLV 132 >gi|282864294|ref|ZP_06273350.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE] gi|282560781|gb|EFB66327.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE] Length = 143 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 49/100 (49%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG Sbjct: 1 MHISAKADYATRALLELACEPGRPLTCEAIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG L RPA+ IT+LDVV+A + +D P Sbjct: 61 EGGYWLGRPAEDITLLDVVRAVDGEVLTLRGEPLADLDYP 100 >gi|170761689|ref|YP_001786255.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408678|gb|ACA57089.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] Length = 126 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 11/107 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHND------YPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M TK T+Y + ++ Y H+D YP +A IS +L KIL LVKA I+ Sbjct: 1 MKYTKATNYALHIVAYIIKHDDGKHISLYP-----LANYFNISPSYLSKILTKLVKADII 55 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 ++ G GG L + + I++LDV+KA E + + C + K +C + Sbjct: 56 QSTPGVNGGYILYKNKEDISLLDVIKAIEGNSSIFTCEMNEKSECKI 102 >gi|325830725|ref|ZP_08164109.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] gi|325487132|gb|EGC89575.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] Length = 186 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+R DY R+L D +S IAE I F I LVK G+++TVRG Sbjct: 1 MDVTRRCDYACRILRAAYKSGDSYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116 RGG+ L C PA +T+L+V++A + ++ C C C + + A LN Sbjct: 61 RGGLALNCDPA-AVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLN 118 Query: 117 AFFDVLT 123 A+F +T Sbjct: 119 AYFGAIT 125 >gi|289524284|ref|ZP_06441138.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502456|gb|EFD23620.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 150 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 23 YPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 + RIS +++E +SE K+ Q L KAG+V ++RG GGV L PA +IT+ +V + Sbjct: 25 HERRISVRKLSEMISVSEQHAAKVFQRLTKAGLVNSLRGPSGGVELAVPASKITLYEVYE 84 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 A E C +K CP GSC +L++ F L+ ++ LVR+ Sbjct: 85 AIEGKPSSDYCLI-NKQHCPF-GSCIFGGMLKRINEEFIKYLSSRTLADLVRS 135 >gi|291166173|gb|EFE28219.1| Rrf2 family protein [Filifactor alocis ATCC 35896] Length = 147 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG++ + A++ D P + IA +SE +L +I L K+G+V +VR Sbjct: 1 MKLSTKGRYGLKAMYDLAVYEDLHEPISLKAIASNNNLSEQYLEQIFSKLKKSGLVNSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R + +IT+ D+++ + + C C C +V +K ++ Sbjct: 61 GAQGGYVLSRSSKEITVGDIIRVLDGPIAPSMCLLEEVGPCISGKDCPTRAVWKKIKDSV 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 DV+ ++ +V IK Sbjct: 121 DDVIDNITLYDMVIEHKLIK 140 >gi|251773253|gb|EES53803.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum ferrodiazotrophum] Length = 174 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%) Query: 2 HLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +L K +Y + L+ D P +S IAE +S +L KI L KAGIV G Sbjct: 6 YLGKGVEYALHSLLSLIKTPEDSPLGVSDIAEFQGVSPSYLSKIFTRLKKAGIVRFSIGV 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDC--PLVGSCGLTSVLR 112 +GG L +P DQIT DVV A E F + EC A +K C P S G ++ + Sbjct: 66 KGGYVLAKPPDQITFWDVVVAVEGEFSLFECRNIREKIAIYKEGCLNPDWQSRGPCTIHK 125 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 A DV TQ +N + ++K+ + Sbjct: 126 ----AMMDVETQIRNSLKEKNIAWLRKVVD 151 >gi|168182647|ref|ZP_02617311.1| rrF2 family protein [Clostridium botulinum Bf] gi|237796007|ref|YP_002863559.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657] gi|182674079|gb|EDT86040.1| rrF2 family protein [Clostridium botulinum Bf] gi|229263788|gb|ACQ54821.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657] Length = 148 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI + P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116 +GG L R IT+ D+++ E ++ C C V C L + ++K+L+ Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNVDCCATRLLWAKIKKSLD 119 Query: 117 AFFDVLT-QYSIECLVRNRSSIKKIFN 142 + T Q +E + S I++ N Sbjct: 120 NIMESTTLQDMVEDYKKINSPIRRSEN 146 >gi|283780532|ref|YP_003371287.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283438985|gb|ADB17427.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 178 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 6/103 (5%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +Y +R ++Y A + P Q+A + + +L K+LQ LV+AGI+ + RG GG Sbjct: 3 SQTVEYALRAVVYLAADSSQPATTEQLAAVTKVPKAYLSKVLQGLVRAGILHSQRGIGGG 62 Query: 64 VRLCR-PADQITILDVVKATEESFFVAEC---FASHKID-CPL 101 + L + PAD +TIL+VV+A E + C A H CPL Sbjct: 63 MTLVKSPAD-LTILEVVQAVEPVARIRSCPLGLAWHGEHLCPL 104 >gi|114776741|ref|ZP_01451784.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1] gi|114552827|gb|EAU55258.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1] Length = 151 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 48/91 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + LTK TDYGI +L A +++AE I + KILQ L+ ++ + RG Sbjct: 2 LRLTKLTDYGILLLTRMASSEQLRFTATELAEMTHIPMPTVSKILQMLLHENLLSSTRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 RGG +L R A QI I DV+ E S + EC Sbjct: 62 RGGYQLTRDASQINIRDVINVFEGSIALTEC 92 >gi|307325862|ref|ZP_07605062.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306888650|gb|EFN19636.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 149 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TD +R +M A+ P Q+A + L K+ L G++ET RGR Sbjct: 1 MRLTKSTDLALRTIMRLAVTGAEPCTARQVAGELQVPYSHLAKVAARLQHLGLIETRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ +V+ E V +C CPL C L LR+A AF Sbjct: 61 GGGLALTATGRTASVGQLVREFEGVGDVVDC--EGDTPCPLRQGCRLRMALRRAQEAFLA 118 Query: 121 VLTQYSIECLV 131 L +++ LV Sbjct: 119 SLDPLTVDDLV 129 >gi|262370470|ref|ZP_06063796.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046] gi|262314812|gb|EEY95853.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046] Length = 157 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V ++RG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L V++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARRADEITVLAVIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + ++ LV R +++K+ Sbjct: 119 DYLAKITLADLV-ARDNVQKV 138 >gi|153938123|ref|YP_001392722.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152934019|gb|ABS39517.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|295320703|gb|ADG01081.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] Length = 133 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 11/135 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A+ D PN+I ++AE +S +L KIL LVK G++ + Sbjct: 1 MKYSKATNYALHTMLFLAM--DTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G GG L + + I+ LD++ A E + +C +D P C + V+ A Sbjct: 59 SGVNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCC----LDSP--SECVIKKVMLSAEKK 112 Query: 118 FFDVLTQYSIECLVR 132 + L+ I LV+ Sbjct: 113 MEEELSNQKISDLVK 127 >gi|322806906|emb|CBZ04476.1| iron-sulfur cluster regulator IscR [Clostridium botulinum H04402 065] Length = 148 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI + P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+ D+++ E ++ C C + C + K + Sbjct: 61 AQGGYILNRHPEDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119 Query: 120 DVLTQYSIECLVRNRSSI 137 +++ +++ +V + I Sbjct: 120 NIMESTTLQDMVEDYKKI 137 >gi|315181355|gb|ADT88268.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC 11218] Length = 172 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 17/134 (12%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGRRGGV 64 +YGI L+ + P +S + EA + + +L KI KAG+VE+ GR+GG Sbjct: 9 EYGIHCLVNMVDEDGEPREMS-VREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRKGGY 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC---------FAS--HKIDCPLVGSCGLTSVLRK 113 +L + +I++LD+ A + + +C F H+ C G CG+ +V+RK Sbjct: 68 KLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVHQWACE--GMCGIHAVMRK 125 Query: 114 ALNAFFDVLTQYSI 127 A N VL + SI Sbjct: 126 AQNQMQQVLAEQSI 139 >gi|295102090|emb|CBK99635.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii L2-6] Length = 143 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H ++ + ++A ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLAEHRSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 + GG RL R DQ T+ +++ TE S C CP + C Sbjct: 61 KGGGYRLTREPDQYTVGEILTLTEGSLAPVSCLVQGAAPCPRMSGC 106 >gi|294811041|ref|ZP_06769684.1| Rrf2 family protein, putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294323640|gb|EFG05283.1| Rrf2 family protein, putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 15 MYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 M A+H+D P + ++A A + K++ L G+VE RGR GG+ L Sbjct: 1 MRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRGRGGGLALTTAGRTG 60 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 +I +V+ E + V C CPL +C L SVLR A AF+ L Y+++ LV Sbjct: 61 SIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFYTALDPYTVDDLV 116 >gi|332183985|gb|AEE26239.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida 3523] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A ++ P ++I+E+ ++ + K+L L A IV + RG Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKISESTGLNIPTVRKLLNQLSLANIVTSKRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FF 119 GG L +IT+LD+VK E+ + EC K C L G+C + S K LN+ Sbjct: 62 EGGYTLVSDPREITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNC-MVSGYWKVLNSQLL 118 Query: 120 DVLTQYSIECLVRNR 134 +L++ SI +V N+ Sbjct: 119 GLLSKTSIYDIVNNK 133 >gi|78186422|ref|YP_374465.1| hypothetical protein Plut_0538 [Chlorobium luteolum DSM 273] gi|78166324|gb|ABB23422.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum DSM 273] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ +YG+ + Y A D + ++AE S FL K +Q L +AGI +V+G Sbjct: 2 LQVSRKFEYGLHAVAYLASRGVDRVVTVKEMAEEIGFSPEFLAKAMQSLTRAGIASSVQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R A+ IT+ D+ A E + + C +C + SC + N Sbjct: 62 VKGGYQLARKAESITVADIGTAIEGAPHLVRCVVKAD-NCEIYSSCPHRGYMTSLQNRIQ 120 Query: 120 DVLTQYSIECLV 131 +L +++ L+ Sbjct: 121 GLLASTTVQALL 132 >gi|257440868|ref|ZP_05616623.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] gi|257196648|gb|EEU94932.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] Length = 143 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + + ++AE ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLAEHQAERYVPLKEVAERQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ +++ TE S C C + +C T + K LN Sbjct: 61 KGGGYRLTRTPDQYTVAEILLLTEGSLAPVSCLVPGAPACERLPNC-RTYTMWKGLN--- 116 Query: 120 DVLTQY 125 D++ Y Sbjct: 117 DMIADY 122 >gi|256371980|ref|YP_003109804.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256008564|gb|ACU54131.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium ferrooxidans DSM 10331] Length = 151 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY R L+ A+H +D P ++++A + + +L +IL L AG+V + RG Sbjct: 1 MRVSTRGDYAARALLSLALHPSDQPTSVAELARRTGLPQPYLEQILLTLKGAGLVRSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L R A++IT+ ++ A + V + H+ C G C L V + + Sbjct: 61 AGGGYTLGRSAEEITLAQIIAAVDGPITVGDFKEPHEDGACDHEGQCALLEVWAEVGHHM 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D L Y++ +VR ++ Sbjct: 121 ADHLRSYTLAEMVRRARGLR 140 >gi|237736975|ref|ZP_04567456.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229420837|gb|EEO35884.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 143 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 5/94 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M + +Y IR+L+Y + + NRI ++I++A I LF +IL+ L KA +V+ Sbjct: 1 MRIKNEIEYVIRILLYLTKYGE--NRIVSSNEISDAEDIPHLFSLRILKKLEKASLVKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +G RGG +L +P+++IT+ D V+ E + +C Sbjct: 59 KGARGGYQLTKPSEEITLRDAVETIEPVICIKDC 92 >gi|255505326|ref|ZP_05345447.3| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] gi|255268340|gb|EET61545.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] Length = 153 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+ P R+ IA+ IS ++ +I+ L KAG ++++RG Sbjct: 10 MKISTKGRYALRIMLDIAVMGGSEPVRVKDIAKRQEISVKYMEQIVTILSKAGYLKSIRG 69 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R T+ +++ TE S C CP C + R+ A Sbjct: 70 PQGGYRLARQPKDYTVGMILRLTEGSLAPVACLEDEPNLCPRQEQCVTLRLWRELDEAIR 129 Query: 120 DVLTQYSIECLVRNRSSI 137 V+ +Y++E L + + + Sbjct: 130 GVVDKYTLEDLAQWQQEM 147 >gi|225028919|ref|ZP_03718111.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353] gi|224953758|gb|EEG34967.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353] Length = 149 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+L+K++ YGI L+ A++ D ++S IAE IS +L +I L KAG+V +V+G Sbjct: 1 MNLSKKSRYGITALIDLAVYAKDQCVQLSSIAERNNISVKYLEQIFSSLRKAGLVRSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L + + IT+ DV+ A + S+ + + Sbjct: 61 PQGGYLLAKRPESITVADVIHALDGSYLLED 91 >gi|295111229|emb|CBL27979.1| transcriptional regulator, BadM/Rrf2 family [Synergistetes bacterium SGP1] Length = 161 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ T YG+R L C D P +S IA I +L ++ L ++ I+++VRG Sbjct: 1 MKLSTTTRYGLRALTDLCVQQQDAPVSVSDIARRQSIPVNYLEQLFAKLRRSNILKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116 +GG L RPA +IT+ +V+ A E C + C +C L + LR +++ Sbjct: 61 AQGGYLLARPAKEITLSEVIAALGEEILFGSCQSEK--GCANAATCSTFDLWNRLRISID 118 Query: 117 AFFDVLT 123 D T Sbjct: 119 GILDGTT 125 >gi|325290069|ref|YP_004266250.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] gi|324965470|gb|ADY56249.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] Length = 165 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R YG+++++ A+H N+ P + +A+ +SE +L +++ L KAG+V+++RG Sbjct: 1 MRFSTRGRYGVQLMVDLALHSNNEPISLKSVADRQKLSEHYLEQLVPDLRKAGMVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L + + I + D+++A E EC + C C V + ++ Sbjct: 61 AQGGYILAKKTEDIIVGDIIRALEGPIAPVECSGQKTENCCEKTNFCLTREVWVRVSDSI 120 Query: 119 FDVLTQYSIECLVR 132 D++ S+ LV+ Sbjct: 121 NDLVDSISLADLVQ 134 >gi|269798676|ref|YP_003312576.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Veillonella parvula DSM 2008] gi|294792648|ref|ZP_06757795.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] gi|269095305|gb|ACZ25296.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula DSM 2008] gi|294456547|gb|EFG24910.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] Length = 139 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H N I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 + GG RL + + + +++ A E+S + C CP+ C LT+ L + L + F Sbjct: 61 KYGGYRLVKDPSEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119 Query: 119 FDVLTQYSIECLVRNR 134 V+ S++ ++ ++ Sbjct: 120 RHVMEHVSLQDVMDHK 135 >gi|150015981|ref|YP_001308235.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902446|gb|ABR33279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 150 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A + P I I++ +SE +L ++ PL +A ++ ++RG Sbjct: 1 MKLSTKGRYGVRAMVDLASNYGGAPVSIKTISKRENLSEYYLEQLFSPLRRANMIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG LC+ IT+ D++ E +A+C ++C C +V K + Sbjct: 61 AQGGYVLCKAPKDITVGDIMTILEGPVEIADCI--DGVECDSSDCCATKAVWEKIKRSID 118 Query: 120 DVLTQYSIECLVRN 133 DV+ +++ ++ + Sbjct: 119 DVMNSITLQDILDD 132 >gi|118579599|ref|YP_900849.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502309|gb|ABK98791.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus DSM 2379] Length = 134 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A D +S+IA A + + FL KI Q K G+V + RG Sbjct: 2 MELTRKGEYAIRGIVYLASRPGDQVCLLSEIAAAVDVPQTFLAKIFQQFSKIGLVRSYRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R ++IT+L+VV+A E C Sbjct: 62 TGGGFMLGRAPEKITLLEVVEAVEGPVVPNRC 93 >gi|221194912|ref|ZP_03567968.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] gi|221184815|gb|EEE17206.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] Length = 179 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 5/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L + D + +A + F I LV++ IV ++RG Sbjct: 1 MEVSRKTDYALRILSILVKNPDKVISVRDAVQASDVPYSFARVIQHDLVRSHIVSSMRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVL---RKAL 115 +GG+ L +IT+LDVV+A + +A C ++ CP SC V K L Sbjct: 61 QGGMSLAVDPKEITLLDVVEAIQGPILIAGCESAGPDNTPCPRKASCSFNPVWCNAEKIL 120 Query: 116 NAFFDVLT 123 ++F +T Sbjct: 121 RSYFASVT 128 >gi|126433552|ref|YP_001069243.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS] gi|126233352|gb|ABN96752.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS] Length = 153 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M A R++ IA SE + K + L G+V R Sbjct: 1 MQLTRFTDLGLRTMMLLAAGEADGQRVTTRTIAAGANASEHHIAKAVARLADLGMVHARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V +C CPLV +C L L A AF Sbjct: 61 GRVGGLTLTDAGRDASVGWLVRRLEGDREVIQCGGEDP--CPLVAACRLRKALSDAKEAF 118 Query: 119 FDVLTQYSIECLV 131 + L +Y+I L Sbjct: 119 YRELDRYTIADLA 131 >gi|166032645|ref|ZP_02235474.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC 27755] gi|166027002|gb|EDR45759.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC 27755] Length = 148 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ ++ YG+R L+ +++ + N + IAE IS +L ++ L KAGIV+++ Sbjct: 1 MKLSMKSRYGLRALIDLSVN--FKNEQVALGGIAERNNISPQYLEQVFASLRKAGIVKSI 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESF 86 +G +GG L +PA+QITI +V++A E + Sbjct: 59 KGSQGGYFLNKPAEQITISEVIEALEGDY 87 >gi|289433915|ref|YP_003463787.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170159|emb|CBH26699.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 138 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG +L +PA I+ LDV++A E C +H P C + V+ A Sbjct: 61 VNGGYKLAKPASNISFLDVIQAIEGKTAFFHCDPKNHAETKP---HCLIGEVMGNAEQQM 117 Query: 119 FDVLTQYSIECLV 131 D L++ +I +V Sbjct: 118 EDYLSKQTIGSIV 130 >gi|307720334|ref|YP_003891474.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas autotrophica DSM 16294] gi|306978427|gb|ADN08462.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas autotrophica DSM 16294] Length = 137 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K Y IR+L Y A H D ++++E I FL KI+ +VK+G+V ++RG Sbjct: 1 MQLSKSAQYAIRILAYMADHKDSKLLNATELSETLLIPYKFLTKIMTEVVKSGLVVSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 R GG +P +I + +++ +S +C Sbjct: 61 RDGGYSFAKPPSEIMVSEILDIFHDSIKDEQC 92 >gi|258515490|ref|YP_003191712.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] gi|257779195|gb|ACV63089.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] Length = 142 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ + + A+H P + +AE +SE +L +++ L K+G+V++VRG Sbjct: 1 MRMSTKGHYGLKAMFFLALHYGPDPIPLKNVAERQGLSENYLEQLIATLRKSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R +I + D+++ E EC + C C +V K ++ Sbjct: 61 AQGGYILARDPSEIKVGDIIRVLEGPIAPLECVSEGVPSVCDQFDFCITRTVWEKVRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 DVL S+ + ++ +K Sbjct: 121 ADVLDSISLADMCQDAEKARK 141 >gi|260770286|ref|ZP_05879219.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2 family [Vibrio furnissii CIP 102972] gi|260615624|gb|EEX40810.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2 family [Vibrio furnissii CIP 102972] Length = 172 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGRRGGV 64 +YGI L+ + P +S + EA + + +L KI KAG+VE+ GR+GG Sbjct: 9 EYGIHCLVNMVDEDGEPREMS-VREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRKGGY 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115 +L + +I++LD+ A + + +C F G CG+ +V+RKA Sbjct: 68 KLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVPQWACEGMCGIHAVMRKAQ 127 Query: 116 NAFFDVLTQYSIECLVRN 133 N VL + SI L + Sbjct: 128 NQMQQVLAEQSILMLSKQ 145 >gi|289423544|ref|ZP_06425345.1| RRF2-family transcriptional regulator [Peptostreptococcus anaerobius 653-L] gi|289156046|gb|EFD04710.1| RRF2-family transcriptional regulator [Peptostreptococcus anaerobius 653-L] Length = 152 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+ P + IA+ IS+ +L +I L KA +V++VRG Sbjct: 1 MKLSTKGKYGLKAMFELALSKTGEPVSLKHIAKQQNISDQYLEQIFSSLKKAKLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +IT+ D++K E +C K C SC V K ++ Sbjct: 61 AQGGYMLSKDPKEITVADILKVLEGDMAFTDCLLD-KDACENFNSCATKYVWAKIKDSIE 119 Query: 120 DVLTQYSIECLVRNRSS 136 V S++ +V + S Sbjct: 120 QVTMAISLQDMVDDYES 136 >gi|317500549|ref|ZP_07958771.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089351|ref|ZP_08338251.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898059|gb|EFV20108.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|330405414|gb|EGG84949.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium 3_1_46FAA] Length = 142 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A + + P I+ I+ ISE +L +++ L KAGIV +VRG Sbjct: 1 MKLSTKGRYGLRALIDLAQNGGEQPVSITSISTRQDISERYLEQLMSMLKKAGIVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG L + + I++ DV++A E S +C C + SC V +K ++ Sbjct: 61 AGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSCVTKYVWKKINDSI 120 Query: 119 FDVLTQYSIECLVR 132 + + ++ LV+ Sbjct: 121 NQTVDEIKLDQLVK 134 >gi|269217073|ref|ZP_06160927.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] gi|269129210|gb|EEZ60295.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] Length = 168 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + +IA ISE +L IL+ LVK G++ +RG Sbjct: 26 MMISTKGRYALRVMVDLAEHMSCSYTPLKEIARRQEISEKYLESILKVLVKNGLLVGLRG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116 + GG RL R T+ ++++ TE C + C +GSC + R K +N Sbjct: 86 KGGGYRLTRDPSLYTVGEILRLTEGGLAQVPCLDEDESSCDRMGSCRTVEMWRGLDKVIN 145 Query: 117 AFFDVLT 123 + D +T Sbjct: 146 DYLDGIT 152 >gi|262376138|ref|ZP_06069368.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter lwoffii SH145] gi|262308739|gb|EEY89872.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter lwoffii SH145] Length = 157 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ ++ +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPSEKTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L +++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLAIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + S+ LV Sbjct: 119 DYLEKISLADLV 130 >gi|300816522|ref|ZP_07096743.1| Rrf2 family protein [Escherichia coli MS 107-1] gi|300906007|ref|ZP_07123731.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|300929285|ref|ZP_07144761.1| Rrf2 family protein [Escherichia coli MS 187-1] gi|301302595|ref|ZP_07208725.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|301325941|ref|ZP_07219362.1| Rrf2 family protein [Escherichia coli MS 78-1] gi|300402174|gb|EFJ85712.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|300462778|gb|EFK26271.1| Rrf2 family protein [Escherichia coli MS 187-1] gi|300530752|gb|EFK51814.1| Rrf2 family protein [Escherichia coli MS 107-1] gi|300842120|gb|EFK69880.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|300847294|gb|EFK75054.1| Rrf2 family protein [Escherichia coli MS 78-1] gi|315255522|gb|EFU35490.1| Rrf2 family protein [Escherichia coli MS 85-1] gi|324019356|gb|EGB88575.1| Rrf2 family protein [Escherichia coli MS 117-3] Length = 125 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ + +S + KI+ L +AG V VRG+ GG+RL + A I I DVV+ E Sbjct: 12 ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGDVVRELEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 72 LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 122 >gi|239918539|ref|YP_002958097.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281415252|ref|ZP_06246994.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239839746|gb|ACS31543.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 169 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 13/142 (9%) Query: 3 LTKRTDYGIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 L+ + G+ +C + + P + +AEA +S +L K LQ L G+V + Sbjct: 2 LSMQLPNGVEWTAHCLVVLEQFGSTQPVPSAALAEAYGLSPTYLNKHLQKLAANGLVTST 61 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTS 109 G+ GG L RPA +IT+ DVV A + + C F + G C + S Sbjct: 62 PGQAGGFALARPAQEITLADVVDALDGRGPIFRCTEIRCQGLFKERSAEIKASGPCRIAS 121 Query: 110 VLRKALNAFFDVLTQYSIECLV 131 +R+A +A+ L+Q SI L Sbjct: 122 AMRQAEDAWRSSLSQVSITDLA 143 >gi|227499551|ref|ZP_03929658.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227218310|gb|EEI83564.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 133 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 61/101 (60%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A ++ +S+I++ +SE +L ++++ L K G++ + RG Sbjct: 1 MKLSTRGRYGLRAMCYLASNSSRGYISVSEISDKLNLSENYLEQLIRLLKKEGLISSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 +GG ++ R D++T+ D+++ E + +++C S ++C Sbjct: 61 PKGGYKITRDLDELTVGDILRVLEGNITISDC-VSGDVNCD 100 >gi|159899482|ref|YP_001545729.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892521|gb|ABX05601.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon aurantiacus ATCC 23779] Length = 142 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + +YG+R L A H Y + Q IAE ISE +L ++L L KAG++ +V Sbjct: 1 MRLSTKGEYGVRALFDLAQH--YGEGLVQSHEIAERQAISENYLNQLLIALRKAGLITSV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSC 105 RG +GG +L RP I++LD + E AS D L+G Sbjct: 59 RGPQGGHQLARPPQAISLLDAILVLEGPLLPTPEGASLDTFDAGLLGEV 107 >gi|326384426|ref|ZP_08206106.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196771|gb|EGD53965.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 176 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD G+RV+M A + + ++A+ +S + K++ L + G+V + RGR Sbjct: 1 MQLTRFTDIGLRVVMALAADPEASHTSRRLADDLDLSYTHVAKVVSRLAELGVVHSSRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + + + + E V +C CPL +C L L A AF+D Sbjct: 61 SGGLGITELGPRAGVGWLARHLEGDGPVVDC--EGPTPCPLRSACRLRGALAAAQEAFYD 118 Query: 121 VLTQYSIECLVRNRSSIK 138 L + +++ L+ + + + Sbjct: 119 SLDRLTVQDLIADPTGAR 136 >gi|188582606|ref|YP_001926051.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi BJ001] gi|179346104|gb|ACB81516.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium populi BJ001] Length = 188 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +HL+ TDYG+R+LM + IA+ IS L KI Q LV+AG+VE +G Sbjct: 19 LHLSLHTDYGLRLLMRLTLVEPGAWIATPTIAQRFGISVHHLQKIAQALVRAGVVEARQG 78 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGVRL + I + +V E V +C + C L+ C L L A AFF Sbjct: 79 RAGGVRLAQNPRDIRLGRLVAELEGVGTVVDC---RRDPCRLLSRCRLKWALDAAEQAFF 135 >gi|303327293|ref|ZP_07357735.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] gi|302863281|gb|EFL86213.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] Length = 140 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ +T Y R+L Y A H + P + +A IS F+ +IL+ L AGI +VRG Sbjct: 1 MKLSAKTRYAARILFYMAKHVMNEPISSNLLAAKTGISSQFIEQILRQLRLAGITGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +++T +VK E +A C + +C G C + Sbjct: 61 AKGGHILLRKPEELTFGCIVKLMEGGIELAGCL-ENPGNCSRFGDCAVRKAWESLQGTLD 119 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L ++E L+R+ K++F+A Sbjct: 120 GALESITMEDLLRD----KELFSA 139 >gi|239982229|ref|ZP_04704753.1| putative transcriptional regulator [Streptomyces albus J1074] gi|291454076|ref|ZP_06593466.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291357025|gb|EFE83927.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 153 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-----DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT+ TD +RVLM A+ + D P ++A + K + L G+VE Sbjct: 1 MRLTRFTDLALRVLMRLAVEDPKATDDLPT-TREVAAGMRVPYTHTAKAVARLQHLGLVE 59 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 RGR GG+ L ++ +V+ E + V EC + CPL +C L LR+A Sbjct: 60 ARRGRGGGLTLTAAGRSASVGALVRELEGTGDVVECEGAEP--CPLRSACRLRGALRQAQ 117 Query: 116 NAFFDVLTQYSIECLV 131 AFF L ++ L Sbjct: 118 EAFFAALDPLTVGGLA 133 >gi|254491678|ref|ZP_05104857.1| FeS assembly SUF system regulator [Methylophaga thiooxidans DMS010] gi|224463156|gb|EEF79426.1| FeS assembly SUF system regulator [Methylophaga thiooxydans DMS010] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + K TDYGI ++ Y A + D + IAEA + + K+L+ L G++++ RG Sbjct: 2 LRMGKLTDYGIVLMSYLAANRDVQHSAHTIAEAVKVPLPTVRKVLKSLSHGGLLKSERGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L D+I++ +++ A E + EC S + C C + + + NA F Sbjct: 62 MGGYSLNNSPDKISVAEIITAIEGPIALTECV-SDESHCEQETHCAVQTNWTRINNAVFH 120 Query: 121 VLTQ 124 L + Sbjct: 121 ALDE 124 >gi|121535959|ref|ZP_01667753.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] gi|121305451|gb|EAX46399.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] Length = 148 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + A+H P + +A+ ISE +L +++ L KAG V++VRG Sbjct: 1 MKLSTKGRYGVAAMYDLALHYGQGPISLKNVAKRQGISEHYLEQLMGILRKAGYVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +IT+ D+++ E +C + C C V K ++ Sbjct: 61 SQGGYTLTKDPAEITVGDIIRIMEGPIAPVDCLLTDNNSCKRADICVTRGVWAKVRDSIS 120 Query: 120 DVLTQYSIECLVR 132 VL S+ L R Sbjct: 121 QVLDSISLADLCR 133 >gi|150017088|ref|YP_001309342.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903553|gb|ABR34386.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 137 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M TK T+Y + ++Y + N + +S +AE +S +L KIL LVKA ++E+ Sbjct: 1 MKYTKATNYALHTIVYM-MENAKSEKLSVSALAEHFNLSTTYLSKILTQLVKADLIESTP 59 Query: 59 GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G GG L + I+ +DV+KATE S FV + K C + V+ +A N Sbjct: 60 GANGGYVLRKDMRSISFMDVIKATEGTGSLFVCNLNENSK--------CLIEKVMSEAEN 111 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 + L + L +N+S+ K Sbjct: 112 VLENYLEDKKLYDLTQNKSNCK 133 >gi|167750161|ref|ZP_02422288.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702] gi|167656904|gb|EDS01034.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702] gi|291531912|emb|CBK97497.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum 70/3] gi|291556686|emb|CBL33803.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum V10Sc8a] Length = 145 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L+ A H D + +IA+ +S+ +L +I+ L K+ I+ T RG Sbjct: 1 MKISTKGRYVLRMLIDLAEHQGDGYIPLKEIAQRQGVSKKYLEQIVPMLNKSDILRTNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116 +GG RL + D+ T+ D+++ TE S C S ++C C S+ L K +N Sbjct: 61 FQGGYRLAKAPDKYTVGDILRLTEGSLAPVACLESGVVECDRSEHCATLSLWQGLYKVIN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 EYLDSVT 127 >gi|284046052|ref|YP_003396392.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283950273|gb|ADB53017.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 152 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ +TDY +R + A+ +++P + +IA A I FL IL L + GIV + RG Sbjct: 1 MRISAKTDYAVRAAVELAAVTDEHPLKSERIATAQEIPLRFLENILVQLRQGGIVVSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 GG RL P ++IT+ DV++A + K+D Sbjct: 61 AEGGYRLALPPEEITVADVIRAIDGPLAAVSGERPEKLD 99 >gi|187778845|ref|ZP_02995318.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC 15579] gi|187772470|gb|EDU36272.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC 15579] Length = 148 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI + P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R IT+ D+++ E ++ C C V C + K + Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCGNVDCCATRLLWAKIKKSLD 119 Query: 120 DVLTQYSIECLVRNRSSI 137 +++ +++ +V + I Sbjct: 120 NIMESTTLQDMVEDYRKI 137 >gi|120602252|ref|YP_966652.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120562481|gb|ABM28225.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] Length = 188 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +T Y R+L+ A+H + P + ++E ++ F+ +IL+ L + G+ + RG Sbjct: 19 MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 78 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R D I++ D+V+ E + C C C S KA A Sbjct: 79 AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 138 Query: 120 DVLTQYSIECLV 131 L + S+ L+ Sbjct: 139 AALDETSLTALM 150 >gi|291280535|ref|YP_003497370.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290755237|dbj|BAI81614.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans SSM1] Length = 142 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T R+ Y IR L A+ + P + +++E IS +L ++ L+KAGIV +VR Sbjct: 1 MKVTTRSRYAIRALYALALAGGDKTPVSLKKVSEMESISMKYLERLFSNLMKAGIVNSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115 G GG +P ++IT+LDVV+ + +C C C + + L+ + Sbjct: 61 GIYGGYIFSKPLNEITLLDVVEVMDGVIKPVDCVEEE--GCDRSRDCSINWIWFDLKNII 118 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 + +T Y + ++N+ +++ Sbjct: 119 ENYLSKITFYDLVYGLKNKYKVEE 142 >gi|282849760|ref|ZP_06259144.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|294794427|ref|ZP_06759563.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] gi|282580697|gb|EFB86096.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|294454757|gb|EFG23130.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] Length = 139 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H N I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 + GG RL + + + +++ A E+S + C CP+ C LT+ L + L + F Sbjct: 61 KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119 Query: 119 FDVLTQYSIECLVRNR 134 V+ S++ ++ ++ Sbjct: 120 RHVMEHVSLQDVMDHK 135 >gi|46580373|ref|YP_011181.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449790|gb|AAS96440.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311233650|gb|ADP86504.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 170 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +T Y R+L+ A+H + P + ++E ++ F+ +IL+ L + G+ + RG Sbjct: 1 MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R D I++ D+V+ E + C C C S KA A Sbjct: 61 AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 120 Query: 120 DVLTQYSIECLV 131 L + S+ L+ Sbjct: 121 AALDETSLTALM 132 >gi|269103288|ref|ZP_06155985.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163186|gb|EEZ41682.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp. damselae CIP 102761] Length = 173 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL A++I + V+ A +ES +C K DC C LT L + L++ Sbjct: 61 PGGGYRLGDDANKIAVGMVIAAVDESVDATKCQG--KGDCQGGARC-LTHTLWRDLSS 115 >gi|224823961|ref|ZP_03697069.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224603380|gb|EEG09555.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 156 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L++ TDYG ++ + A + +++A A ++ KIL+ L + ++ ++RG Sbjct: 2 LRLSRLTDYGTVIMAHMAREPGHVYSAAELAGAVGVALPTASKILKTLARKALLHSLRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +I+I V+ A E F V EC + + CP +C L ++ A Sbjct: 62 HGGYLLARPPREISIAQVIDALEGPFGVTECSVAAGL-CPQENACALRRHWQRIDRALRQ 120 Query: 121 VLTQYSIECLVR 132 L ++E + + Sbjct: 121 TLDGLTLEDMTQ 132 >gi|153855264|ref|ZP_01996430.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814] gi|149752263|gb|EDM62194.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814] Length = 154 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A +++ P I +A ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLRAMIDLARYSEKEPVSIGSVAARQEISERYLEQLVALLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALN 116 GG L + +I++ D+++A E S +C A + C C V +K + Sbjct: 61 ASGGYVLAKKPSEISVGDILRALEGSLEPVKCAAFDTTTGEGCMASDGCVTKYVWQKIND 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 + D + Q ++ L++ SI Sbjct: 121 SINDTVNQIMLDELIQESKSI 141 >gi|238018454|ref|ZP_04598880.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748] gi|237864925|gb|EEP66215.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748] Length = 139 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H N I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 + GG RL + + + +++ A E+S + C CP+ C LT+ L + L + F Sbjct: 61 KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119 Query: 119 FDVLTQYSIECLVRNR 134 V+ + S++ ++ ++ Sbjct: 120 RHVMERVSLQDVMDHK 135 >gi|170759452|ref|YP_001788696.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406441|gb|ACA54852.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 133 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A+ D PN+ + ++AE +S +L KIL LVK G++ + Sbjct: 1 MKYSKATNYALHTMLFLAM--DTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G GG L + + I+ LD++ A E +S C SH C + V+ A Sbjct: 59 SGANGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLESH-------SECVIKKVMLSAEG 111 Query: 117 AFFDVLTQYSIECLVRNRS 135 + L I LV+ S Sbjct: 112 KMEEELKNQKISDLVKKIS 130 >gi|126698875|ref|YP_001087772.1| transcriptional regulator [Clostridium difficile 630] gi|254974823|ref|ZP_05271295.1| transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092211|ref|ZP_05321689.1| transcriptional regulator [Clostridium difficile CIP 107932] gi|255100296|ref|ZP_05329273.1| transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306235|ref|ZP_05350407.1| transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313950|ref|ZP_05355533.1| transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516630|ref|ZP_05384306.1| transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649729|ref|ZP_05396631.1| transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655290|ref|ZP_05400699.1| transcriptional regulator [Clostridium difficile QCD-23m63] gi|260682885|ref|YP_003214170.1| RRF2 family transcriptional regulator [Clostridium difficile CD196] gi|260686483|ref|YP_003217616.1| RRF2 family transcriptional regulator [Clostridium difficile R20291] gi|296451274|ref|ZP_06893014.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08] gi|296880374|ref|ZP_06904337.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07] gi|306519839|ref|ZP_07406186.1| RRF2-family transcriptional regulator [Clostridium difficile QCD-32g58] gi|115250312|emb|CAJ68134.1| Transcriptional regulator, Rrf2 family (Transcriptional regulator of cysteine biosynthesis) [Clostridium difficile] gi|260209048|emb|CBA62167.1| RRF2-family transcriptional regulator [Clostridium difficile CD196] gi|260212499|emb|CBE03426.1| RRF2-family transcriptional regulator [Clostridium difficile R20291] gi|296259880|gb|EFH06735.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08] gi|296428615|gb|EFH14499.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07] Length = 148 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A++ D P + IA+ IS+ +L +I L K+G+V++VRG Sbjct: 1 MKLSTKGRYGLKAMFELALNQDNGPVSLKFIAKKQKISDQYLEQIFSSLKKSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + A+ IT+ D++ E +++C + C C V K Sbjct: 61 AQGGYLLSKNAEDITVGDILVVLEGPVALSDCVLDEDV-CENSNMCVTKIVWEKMKKGIE 119 Query: 120 DVLTQYSIECLVRN 133 DV+ +++ ++ + Sbjct: 120 DVIDSITLKDMIND 133 >gi|291547327|emb|CBL20435.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. SR1/5] Length = 144 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A + P R+ +A+ IS+ +L +I+ L KAG V +VRG Sbjct: 1 MRISTRGRYALRLMLDLATNYTGKPIRLKDVAKRQEISDKYLEQIISILNKAGFVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 +GG L + D+ TI +++ TE S EC + C +C +T +L K L +A Sbjct: 61 PQGGYALQQTPDKYTIGMILRLTEGSLSPVECLDDNGAICDREENC-VTQILWKKLDDAI 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V+ ++E L+ N ++K Sbjct: 120 KGVVDHITLEDLM-NWQAVK 138 >gi|162148975|ref|YP_001603436.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787552|emb|CAP57148.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 T+Y + L++ + N P +A+ I F+ K+L L KAG++E G RGG RL Sbjct: 8 TEYVLHSLLWL-VGNPEPVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66 Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117 RPA+ I++L VV A E + C F G CG+ +V+ +A A Sbjct: 67 ARPAEDISVLAVVDAVEGRKSLFNCQEIRRRCALFDERPPRWATQGVCGIHAVMLRAEQA 126 Query: 118 FFDVLTQYSIECLVRN 133 L + S+ L R+ Sbjct: 127 MRQELARTSLADLARS 142 >gi|152995372|ref|YP_001340207.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836296|gb|ABR70272.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1] Length = 162 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P +S I+ IS +L ++ L K +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDQGPVSLSDISSRQGISLSYLEQLFSKLRKKSLVNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R +I + +V A ES C + DC +C + + Sbjct: 61 PGGGYRLSRLNSEIFVAQIVDAVNESVDATGCKG--RSDCQSGNTCLTHHLWCDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L Q S++ LVR R+ ++++ Sbjct: 119 DFLNQISLDQLVR-RNDVRQV 138 >gi|90410859|ref|ZP_01218873.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90328072|gb|EAS44383.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 172 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG RL A+ I + V+ A +ES +C K DC Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADC 98 >gi|144897308|emb|CAM74172.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 148 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 8/129 (6%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ ++Y A H +D I+ IAEA I + FL IL L G + + +G+ Sbjct: 2 LSSKAKYGLKAMVYLARHADDGSVLIADIAEAESIPKKFLDAILLELKNRGYLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVL---RKA 114 GG L +PA QI + D+V+ + +C + DC C + +V+ R A Sbjct: 62 GGYSLAKPAQQIMVGDIVRVLDGPLAPVQCVSRTAYRRCDDCRDEAGCAVRAVMGEVRDA 121 Query: 115 LNAFFDVLT 123 + A D T Sbjct: 122 IAAILDNTT 130 >gi|148380524|ref|YP_001255065.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|153931906|ref|YP_001384811.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397] gi|153936580|ref|YP_001388282.1| rrF2 family protein [Clostridium botulinum A str. Hall] gi|153940007|ref|YP_001391866.1| rrF2 family protein [Clostridium botulinum F str. Langeland] gi|168180542|ref|ZP_02615206.1| rrF2 family protein [Clostridium botulinum NCTC 2916] gi|170756317|ref|YP_001782184.1| rrF2 family protein [Clostridium botulinum B1 str. Okra] gi|170760847|ref|YP_001787887.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|226949924|ref|YP_002805015.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto] gi|148290008|emb|CAL84127.1| RRF2 family regulatory protein [Clostridium botulinum A str. ATCC 3502] gi|152927950|gb|ABS33450.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397] gi|152932494|gb|ABS37993.1| rrF2 family protein [Clostridium botulinum A str. Hall] gi|152935903|gb|ABS41401.1| rrF2 family protein [Clostridium botulinum F str. Langeland] gi|169121529|gb|ACA45365.1| rrF2 family protein [Clostridium botulinum B1 str. Okra] gi|169407836|gb|ACA56247.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|182668574|gb|EDT80553.1| rrF2 family protein [Clostridium botulinum NCTC 2916] gi|226841762|gb|ACO84428.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto] gi|295319890|gb|ADG00268.1| rrF2 family protein [Clostridium botulinum F str. 230613] Length = 148 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI + P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R IT+ D+++ E ++ C C + C + K + Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119 Query: 120 DVLTQYSIECLVRNRSSI 137 +++ +++ +V + I Sbjct: 120 NIMESTTLQDMVEDYKKI 137 >gi|227499166|ref|ZP_03929301.1| transcriptional regulator [Acidaminococcus sp. D21] gi|226904613|gb|EEH90531.1| transcriptional regulator [Acidaminococcus sp. D21] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 19/147 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ +Y + L+Y AI + I ++A ISE +L KI L K G+V V G Sbjct: 1 MSISVGVEYALHCLIYLAIPTTSRSIGIKEMAAFQGISETYLSKIFMKLRKKGLVSAVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKI-----DCPLVGSC 105 +GG RL R AD+IT DVV+A E + +C H++ +CP C Sbjct: 61 VKGGYRLSREADEITFWDVVEAIEGPHYRFQCAEIRQHMAIVDPHELPPSFSECP----C 116 Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVR 132 ++ V++ A + + L +I L R Sbjct: 117 LISEVMKGAEDQYRTYLKGRTIGWLYR 143 >gi|54307944|ref|YP_128964.1| transcriptional regulator [Photobacterium profundum SS9] gi|81615497|sp|Q6LU63|ISCR_PHOPR RecName: Full=HTH-type transcriptional regulator iscR gi|46912370|emb|CAG19162.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 172 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG RL A+ I + V+ A +ES +C K DC Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADC 98 >gi|307326576|ref|ZP_07605770.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306887770|gb|EFN18762.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 154 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 45/83 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T ++DY +R + A P Q+A I FLF IL+ L A +V +VRG Sbjct: 1 MRITAKSDYAVRAMAELAAAEGSPLTAEQVATRQDIPLRFLFGILRELRLAHLVRSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA +IT+ D ++A + Sbjct: 61 EGGYLLARPAKEITLADAIRAMD 83 >gi|110596721|ref|ZP_01385011.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] gi|110341408|gb|EAT59868.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] Length = 137 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ +YG+ + Y + D + ++A+ +S+ FL K +Q L +AGI +V+G Sbjct: 2 LQVSRKFEYGLHAVTYLSTKGVDRVVTVKEMADDIGVSQEFLSKAMQSLKRAGIARSVQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +IT+ D+ A E + + C C + SC + N Sbjct: 62 VKGGYSLGRKPGEITVADIAIAIEGAPHLMRC-GKKLASCEISSSCHHRDYMNSLQNKIQ 120 Query: 120 DVLTQYSIECLVRN 133 D++ +I L+R Sbjct: 121 DLMASTTIASLLRK 134 >gi|297162887|gb|ADI12599.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 161 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R L A D + IA A I FL IL L + G+V + RG Sbjct: 1 MQISARADYAVRAALELAAAGPDTSLKAEAIAAAQGIPHKFLEGILGDLRRGGLVTSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL RPAD+I I DV++ + Sbjct: 61 GNGGYRLARPADEIAIADVIRVAD 84 >gi|148270395|ref|YP_001244855.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288979|ref|YP_001739217.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2] gi|281412702|ref|YP_003346781.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|147735939|gb|ABQ47279.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila RKU-1] gi|170176482|gb|ACB09534.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2] gi|281373805|gb|ADA67367.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga naphthophila RKU-10] Length = 140 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K Y +R+L+ ++ N P S++AE I+ F K+L L ++G+V +++G+ GG Sbjct: 7 KHVRYALRLLVRLSLENR-PMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGF 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 L + D+I+ LDV+ E+ + +C Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDC 92 >gi|302340142|ref|YP_003805348.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta smaragdinae DSM 11293] gi|301637327|gb|ADK82754.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta smaragdinae DSM 11293] Length = 138 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + Y IR ++ A ++ P I +A IS FL +I L K+GI+ + RG Sbjct: 1 MRITTKGRYAIRAVLRLAQAEEHRPIPIRILAAQEGISPEFLEQIFFRLRKSGIINSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL + A+ +T++++ A EE FF++ C + C C GL + L Sbjct: 61 PGGGFRLMKEANDLTLMEIFDAVEEGFFLSPCTQDGE-QCDREERCLVHGLWEHTYEMLQ 119 Query: 117 AFFDVLT 123 ++F +T Sbjct: 120 SYFGAIT 126 >gi|160943690|ref|ZP_02090921.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii M21/2] gi|158444864|gb|EDP21867.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii M21/2] gi|295103977|emb|CBL01521.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii SL3/3] Length = 143 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 5/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + ++A ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLAEHQSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ +++ TE S C C + +C T + K LN Sbjct: 61 KGGGYRLTRSPDQYTVSEILMLTEGSLAPVSCLTPGASACARMANC-RTYEMWKGLN--- 116 Query: 120 DVLTQY 125 D+++ Y Sbjct: 117 DLISDY 122 >gi|23099471|ref|NP_692937.1| hypothetical protein OB2016 [Oceanobacillus iheyensis HTE831] gi|22777700|dbj|BAC13972.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 139 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 9/136 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A+ + P + IA+ +SE +L ++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELALNYGQGPTSLKMIAKENNLSEHYLEQLASPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT DV++ E + E K P S L+ +R A+ Sbjct: 61 AYGGYMLSREPKSITASDVLRVLEGPLTIVEGMEEEK---PAQQSLWLS--IRDAVK--- 112 Query: 120 DVLTQYSIECLVRNRS 135 DVL Q +++ LV + + Sbjct: 113 DVLDQTTLQDLVDHEN 128 >gi|239908355|ref|YP_002955096.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239798221|dbj|BAH77210.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 155 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 8/142 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A + R IA I + FL IL L + G V++ RG Sbjct: 7 MWVTQKCQYALRALFELAKRQGEGAVRSVDIAANQAIPKRFLEVILHQLRQGGFVDSQRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSC---GLTSVLRKAL 115 + GG L RP IT+ D+++ + +C DC L GSC GL R+AL Sbjct: 67 KEGGFFLSRPPANITVGDIIRFIDGPMTPVDCQLDRPHFDCALKGSCVFLGLWDEAREAL 126 Query: 116 NAFFDVLTQYSIECLVRNRSSI 137 +D T ++ LV S++ Sbjct: 127 ERVYDTKT---LQELVDKESAM 145 >gi|304407560|ref|ZP_07389212.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304343511|gb|EFM09353.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 139 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMMELSAKFGEGPISLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + ADQIT DV++ E Sbjct: 61 AYGGYILSKAADQITAGDVIRVLE 84 >gi|257783930|ref|YP_003179147.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] gi|257472437|gb|ACV50556.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] Length = 198 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY IR+L + + AE I F I LV AG++ + RG Sbjct: 1 MEISRKTDYAIRMLSSLVRNPKKLLSVRDAAEENDIPYSFARSIQHDLVIAGVIVSTRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVL---RKAL 115 RGG+ L Q+++LD+V+A + F++ C + CP SC + K L Sbjct: 61 RGGMMLAIDPTQVSVLDIVEAVQGPVFISNCEWAGPNNEPCPRHNSCYFGPLWCSAEKTL 120 Query: 116 NAFFDVLTQYSI 127 FF +T + + Sbjct: 121 RNFFASVTLHQV 132 >gi|158320700|ref|YP_001513207.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140899|gb|ABW19211.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus oremlandii OhILAs] Length = 179 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H D P + +AE IS+ +L +++ L KAG+V++VRG Sbjct: 29 MRLSTKGRYGLKAMFDLALHYGDGPISLKSVAERQSISDHYLEQLIAGLRKAGLVKSVRG 88 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L +IT+ D+++ E ++C Sbjct: 89 AQGGYMLAENPSKITVGDIIRVLEGPLGPSDC 120 >gi|313639464|gb|EFS04318.1| putative transcriptional regulator [Listeria seeligeri FSL S4-171] Length = 138 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L +PA I+ LDV++A E +FF + +H P C + V+ A Sbjct: 61 VNGGYKLAKPATNISFLDVIQAIEGKTAFFHCDP-KNHAETKP---HCLIGEVMGNAEQQ 116 Query: 118 FFDVLTQYSIECLV 131 D L+ +I +V Sbjct: 117 MEDYLSNQTIGSIV 130 >gi|291288301|ref|YP_003505117.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290885461|gb|ADD69161.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 143 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 7/128 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T ++ Y IR + + + P ++QIAE IS +L +I L K+GIVE R Sbjct: 1 MKITTKSRYAIRSIFALVLMGGDTKPVALTQIAEHEDISRKYLEQIFIKLKKSGIVEGSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKAL 115 G +GG L R I + +V+ A + +++C + + C SCG L S L+K + Sbjct: 61 GAQGGYVLARNPSDIRLKEVIYAMDGPVNISDC--TQEESCDNFSSCGINWLWSGLKKTV 118 Query: 116 NAFFDVLT 123 + + D +T Sbjct: 119 DDYLDNIT 126 >gi|15644275|ref|NP_229327.1| hypothetical protein TM1527 [Thermotoga maritima MSB8] gi|4982094|gb|AAD36594.1|AE001800_4 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 140 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K Y +R+L+ ++ N P S++AE I+ F K+L L ++G+V +++G+ GG Sbjct: 7 KHVRYALRLLVRLSLENR-PMSSSELAEKELITRNFALKVLHYLKRSGLVNSIKGKNGGF 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 L + D+I+ LDV+ E+ + +C Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDC 92 >gi|311899855|dbj|BAJ32263.1| putative transcriptional regulator NsrR [Kitasatospora setae KM-6054] Length = 167 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +R+ M A+ D ++AE + K++ L G+VE RG Sbjct: 1 MRLTKSTDIALRIAMRLAVLDEDQTPTTREVAEVVGVPYNHAAKVVSRLQHLGVVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ++ +V+ E V C CPL SC L LR+A AFF Sbjct: 61 RGGGLALTAAGRTGSLGRIVRELEGVGDVVGC--EDDPPCPLRHSCRLRGALRRAQEAFF 118 Query: 120 DVLTQYSIECLVRN 133 L +++ LV + Sbjct: 119 ATLDPLTVDDLVAD 132 >gi|262196471|ref|YP_003267680.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Haliangium ochraceum DSM 14365] gi|262079818|gb|ACY15787.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum DSM 14365] Length = 273 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + +A A I E + K+L+ LV+AG+V +VRG GG L RPA I++ +V A E Sbjct: 95 VRALAAATGIPEPTVRKVLKTLVRAGVVGSVRGTHGGYALARPASAISVAEVATAFEGPI 154 Query: 87 FVAECFASHKIDCPLVGSCGL 107 V EC + VG+CGL Sbjct: 155 AVTECASEE-----TVGTCGL 170 >gi|313902381|ref|ZP_07835784.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter subterraneus DSM 13965] gi|313467312|gb|EFR62823.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter subterraneus DSM 13965] Length = 141 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + A + P + ++A+A + E +L +++ PL K G+V++VRG Sbjct: 1 MQLSTRGRYGVRAMYELARRYGQGPVPLREVADAQQLPENYLEQLMAPLRKGGLVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 +GG L R QIT+ D+V+ Sbjct: 61 AQGGYVLARDPAQITVADIVR 81 >gi|311900466|dbj|BAJ32874.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae KM-6054] Length = 167 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 17/139 (12%) Query: 6 RTDYGIRVLMYC---------AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 RT G+ ++C A P +++A +S +L K+LQ L +AG++ + Sbjct: 2 RTSEGVEWALHCCLTLVWVGGAEAAPEPVPSARLAAMFELSPTYLNKVLQRLTRAGLLTS 61 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--------CGLT 108 V G RGGVRL R ++IT++DVV A E + C + VG+ CG+ Sbjct: 62 VSGPRGGVRLARAPERITVMDVVAAVEGPDPLFACAEIRQRGASAVGAGPREFARPCGVA 121 Query: 109 SVLRKALNAFFDVLTQYSI 127 +R+A A+ L+ ++ Sbjct: 122 GAMRRAELAWRRELSAQTV 140 >gi|163814456|ref|ZP_02205845.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759] gi|158450091|gb|EDP27086.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759] Length = 144 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 67/136 (49%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ +I++ + +A C +S+ +L ++ L+KAG + +VRG Sbjct: 1 MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL PA++IT+ V++ E + D +V + + V A + Sbjct: 61 RGGYRLNTPAEEITVGMVLREIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLETAINN 120 Query: 121 VLTQYSIECLVRNRSS 136 VL +I L R S Sbjct: 121 VLDNKTIADLTREYSD 136 >gi|320008624|gb|ADW03474.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces flavogriseus ATCC 33331] Length = 150 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD +RVLM + D P ++A + K++ L G+V+ R Sbjct: 1 MRLTRFTDVALRVLMRLTVTTDGEDPPTTREVAATMEVPYTHAAKVVARLQHLGLVDARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L +I +V+ E V EC CPL +C L S LR+A AF Sbjct: 61 GRGGGLTLTTAGRSASIGTLVRELEGPGEVVEC--EGDTPCPLRSACRLRSALRRAEEAF 118 Query: 119 FDVLTQYSIECLV 131 + L ++ L Sbjct: 119 YASLDPLTVSDLA 131 >gi|159186104|ref|NP_356355.2| hypothetical protein Atu4299 [Agrobacterium tumefaciens str. C58] gi|159141238|gb|AAK89140.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 179 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T +YG+ L++ A P +AE IS FL KI L KAGIV G + Sbjct: 3 QMTVGVEYGLHCLLWLASSPGAPLSSRDLAELQGISPSFLAKIFPKLEKAGIVSASEGIK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG L RP IT+L+VV E + +C F G C + +V+ Sbjct: 63 GGYLLARPPGDITVLEVVDTIEGRKPLFDCQEIRGRCAVFRQRPPSWATKGVCAIHAVML 122 Query: 113 KALNAFFDVLTQYSI 127 +A A D L ++ Sbjct: 123 RAEKAMRDSLASQTL 137 >gi|156740844|ref|YP_001430973.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232172|gb|ABU56955.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus castenholzii DSM 13941] Length = 146 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R L+ A + P + I I E +L +IL L +AG++E++RG Sbjct: 1 MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRAGLIESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG RL RP QIT+LD + A E + Sbjct: 61 PQGGHRLARPPSQITVLDALTALEGPLLALDS 92 >gi|108797889|ref|YP_638086.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS] gi|119866984|ref|YP_936936.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS] gi|108768308|gb|ABG07030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS] gi|119693073|gb|ABL90146.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS] Length = 153 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M A R++ IA SE + K + L + G+V R Sbjct: 1 MQLTRFTDLGLRTMMLLAAGEVDGQRVTTRTIAAGANASEHHIAKAVARLAELGMVHARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V EC CPL+ +C L + A AF Sbjct: 61 GRVGGLTLTDAGRDASVGWLVRRLEGDREVIECGGEDP--CPLLAACRLRKAMSDAKEAF 118 Query: 119 FDVLTQYSIECLV 131 + L +Y+I L Sbjct: 119 YRELDRYTITDLA 131 >gi|170721542|ref|YP_001749230.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida W619] gi|169759545|gb|ACA72861.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida W619] Length = 179 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 11/136 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L+Y + + + +A+ + + +L K+ L +A +V G RGG R Sbjct: 9 EYGIHCLLYLVDERGDTRESSVRDLAQLQGVPQEYLAKVFTKLARAKLVAATEGVRGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RP+D+IT+LD+V A + + +C F G+C + +V+ A Sbjct: 69 LARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFEGSPPGWATEGTCAIHAVMLGAQK 128 Query: 117 AFFDVLTQYSIECLVR 132 + L Q +I L R Sbjct: 129 RMEEALAQQTILDLAR 144 >gi|110802830|ref|YP_699071.1| hypothetical protein CPR_1756 [Clostridium perfringens SM101] gi|110683331|gb|ABG86701.1| rrf2 family protein [Clostridium perfringens SM101] Length = 153 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI + P I I++ ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+ D+++ E +++C + C V C + +K + Sbjct: 61 AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +V +++ +V + ++K+ Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138 >gi|86742682|ref|YP_483082.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3] gi|86569544|gb|ABD13353.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3] Length = 177 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES- 85 + Q+A + +L K LQ L KAG+V +V G RGG RL RPADQI +LDVV A E S Sbjct: 28 VQQLAALHGGNPAYLAKHLQALSKAGVVVSVLGPRGGYRLGRPADQIRLLDVVDAIEGSS 87 Query: 86 --FFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFDVLTQYSIECLV 131 F E P C + + + A +A+ L +I +V Sbjct: 88 PVFLCTEIRQRGPAALPPANYRAPCAIAAAVSSAEDAWRQALASTTIADIV 138 >gi|284042783|ref|YP_003393123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283947004|gb|ADB49748.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 153 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 21/143 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +TDY +R + A ++ + P + IA A I FL KIL L +AGIVE+ RG Sbjct: 1 MRIGAKTDYALRAALELAANDGERPVKAEAIATAQQIPPRFLEKILNDLRRAGIVESRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PAD+I + DV++A ID PL G ++ + Sbjct: 61 VEGGHLLASPADEIAVADVIRA---------------IDGPLANVSG-----KRPHELSY 100 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 D + E LV R++++ + + Sbjct: 101 DGAAEKLPELLVAARAALRDVLD 123 >gi|78355271|ref|YP_386720.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217676|gb|ABB37025.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 199 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y R+L+ H D P + +A+ IS F+ K+++PL +AG+VE+VRG Sbjct: 1 MRISASSHYASRILVMLTRHADEAPIPAAALADRSGISIKFVEKLIRPLKQAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 GG L +QI++ DVV+A E + C + C SC G++ L Sbjct: 61 ATGGHMLAMRPEQISLGDVVRAMEGGIDLTHCCDDPE-RCRSKESCRTRQMWSGVSRALE 119 Query: 113 KALNA--FFDVLTQYSIEC 129 + L+A D+L + EC Sbjct: 120 RTLDAITLLDLLNDPAPEC 138 >gi|134298630|ref|YP_001112126.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051330|gb|ABO49301.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum reducens MI-1] Length = 149 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H P + +AE ISE +L +++ L K G+V+++RG Sbjct: 1 MRLSTKGHYGLKAMFDLAMHYGSEPIPLKVVAERQNISEHYLEQLIAVLRKVGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 +GG L +P I + DVV+A E +C + C V C + + ++ Sbjct: 61 AQGGYILAKPPSDIKVGDVVRALEGPIAPLDCVSELEPTVCEKVDYCISRDIWARVRDSI 120 Query: 119 FDVLTQYSIE--CLVRNRSSIKKI 140 +VL ++E CL ++ +I Sbjct: 121 AEVLDSITLEDMCLEAQKAQSNQI 144 >gi|300920798|ref|ZP_07137199.1| Rrf2 family protein [Escherichia coli MS 115-1] gi|300412221|gb|EFJ95531.1| Rrf2 family protein [Escherichia coli MS 115-1] Length = 125 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS++ + +S + KI+ L +AG V VRG+ GG+RL + A I I DVV+ E Sbjct: 12 ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGDVVRELEPLS 71 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 V C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 72 LV-NCSSEF---CHITPACRLKQALSKAVQSFLMELDNYTLADLVEENQPLYKLL 122 >gi|291460624|ref|ZP_06600014.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416815|gb|EFE90534.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 167 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y A + + RI ++ ISE +L K L KAGI+ + G Sbjct: 1 MKFSVAVEYALHGLIYMAGLEENKSIRIQDMSRFQGISESYLSKTYAKLAKAGIISSAAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 +GG RL +PA+QI+ DV++A E Sbjct: 61 AKGGYRLSKPAEQISFWDVIEAIE 84 >gi|323499942|ref|ZP_08104901.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326] gi|323315183|gb|EGA68235.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326] Length = 168 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C + K DC C ++ R + Sbjct: 61 PGGGYRLGEDAYTIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRN 133 D L ++ L+++ Sbjct: 119 DFLNNITLGELMKD 132 >gi|153852854|ref|ZP_01994291.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814] gi|149754496|gb|EDM64427.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814] Length = 148 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L+ AI++ ++ IAE IS +L ++ L KAGIV++++G Sbjct: 1 MKLSMKSRYGLRALIDLAINSKTEQVALNSIAERNKISPQYLEQVFASLRKAGIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L RP +IT+ +++A E + + + Sbjct: 61 SQGGYFLSRPPQEITVSSIIEALEGDYRIED 91 >gi|167629120|ref|YP_001679619.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] gi|167591860|gb|ABZ83608.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] Length = 147 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ +Y I L+ A+ + +S+ IA+ I FL +I+ L + G V++ RG Sbjct: 1 MEITRKAEYAIAALLDLALLPPGESTLSKDIAKRQAIPSNFLPQIMAALSRHGWVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL A+ IT+ V++ E + C CP C L V +A +A Sbjct: 61 AGGGVRLAVEAETITLQAVIEVIEGPIAINRCLVGGG-SCPNQAGCPLHHVWARAQSAML 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 DVL + +I LV + +I + Sbjct: 120 DVLAKTTIADLVTAKRAIGE 139 >gi|328957508|ref|YP_004374894.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] gi|328673832|gb|AEB29878.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] Length = 137 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ + R+ +A+ IS +L KIL L KAG++ + G Sbjct: 1 MKYSKATNYALHSMVHLAMESTSGAVRVEDLAKRQKISPTYLSKILTKLSKAGLIVSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R ++ T LD+++A E + C SH D C + + A + Sbjct: 61 VKGGYRLLRSPEECTFLDIIQAIEGYESLLNCTMSH--DGKWNRHCLIERAVADAEDKLK 118 Query: 120 DVLTQYSIECLVRNR 134 D L + +I +++ R Sbjct: 119 DELARKTIADILKQR 133 >gi|150390216|ref|YP_001320265.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950078|gb|ABR48606.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus metalliredigens QYMF] Length = 149 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + AIH + P + IAE IS+ +L +++ L KAG+V++VRG Sbjct: 1 MKLSTKGRYGLKAMFDLAIHQGEGPIPLKHIAERQKISDHYLEQLIASLRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L D++ + ++++ E +EC C C + K + Sbjct: 61 AQGGYMLANSPDKVVVGEIIRVLEGPLGPSECVLEEDPTACARADYCVTRVIWEKIRVSI 120 Query: 119 FDVLTQYSIECLVRN 133 DV+ +++ +V + Sbjct: 121 SDVIDNITLQDMVDD 135 >gi|257791023|ref|YP_003181629.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|257474920|gb|ACV55240.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] Length = 186 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+R DY R+L + +S IAE I F I LVK G+++TVRG Sbjct: 1 MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116 RGG+ L C PA +T+L+V++A + ++ C C C + + A LN Sbjct: 61 RGGLALNCDPA-AVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLN 118 Query: 117 AFFDVLT 123 A+F +T Sbjct: 119 AYFGAIT 125 >gi|323485134|ref|ZP_08090486.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum WAL-14163] gi|323401564|gb|EGA93910.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum WAL-14163] Length = 146 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R ++Y A + ++I EA ++++F+ K+L+ L AG+V + G Sbjct: 1 MQLTMTTDYALRCMLYLAGKEGLSSS-TEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL---TSVLRKALNA 117 GG RL + A +I +LD++ E++ + C + C +C + L+ L + Sbjct: 60 TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 118 Query: 118 FF 119 FF Sbjct: 119 FF 120 >gi|196228245|ref|ZP_03127112.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] gi|196227648|gb|EDY22151.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] Length = 209 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57 M L+KR +Y +R L+ I + + +I E L FL +IL L AG +ET Sbjct: 1 MKLSKRGEYALRALIDFGIAYELGRPLLKIGELVEKERLPVKFLEQILTQLRGAGYIETK 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKA 114 RG+ GG L +P QI++ V++ + C A + CP CGL ++ Sbjct: 61 RGKAGGYFLAKPPKQISLGQVIRLIDGPLAPISCVSVTAYERCSCPDEAHCGLRMLMLDV 120 Query: 115 LNAFFDVLTQY 125 NA +L +Y Sbjct: 121 RNAIARILDRY 131 >gi|189499741|ref|YP_001959211.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] gi|189495182|gb|ACE03730.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] Length = 132 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ +YG+ ++Y A + ++A S+ FL K LQ L KAGIV +V+G Sbjct: 2 LQVSRKFEYGLHAVVYLARRESGEVVTVKEMAADIGFSQEFLAKALQQLKKAGIVLSVQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 +GG RL ++ITI D+ +A E + C +S + C +V SC S + K Sbjct: 62 VKGGYRLAGLPEEITISDIARAIEGPPRLMRC-SSERGKCEIVSSCSNRSTMFK 114 >gi|238927889|ref|ZP_04659649.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238884222|gb|EEQ47860.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 149 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L A+H Y + IA + ISE +L +++ PL +AG+VE+V Sbjct: 3 MKLSTKGRYSVTALYELALH--YGKGVVPLHAIAASQGISEHYLEQLMVPLRRAGLVESV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRK 113 RG +GG L P Q+TI ++ A E + +C + C G+C + + Sbjct: 61 RGAQGGYTLALPPGQVTIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEE 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 + VL ++ LV+ Sbjct: 121 VCESINSVLNNIALSDLVQ 139 >gi|220935228|ref|YP_002514127.1| iron-sulphur cluster assembly transcription factor IscR [Thioalkalivibrio sp. HL-EbGR7] gi|219996538|gb|ACL73140.1| iron-sulphur cluster assembly transcription factor IscR [Thioalkalivibrio sp. HL-EbGR7] Length = 162 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIHN+ P ++ I+ IS +L ++ L K G+V + RG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHNEQGPISLADISHRQGISLSYLEQLFARLRKQGLVVSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L RPAD+ I DV+ A +E C + DC Sbjct: 61 PGGGYSLSRPADKTAIADVIAAVDEKVDTTRCGGA--ADC 98 >gi|209545272|ref|YP_002277501.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532949|gb|ACI52886.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 180 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 T+Y + L++ + N P +A+ I F+ K+L L KAG++E G RGG RL Sbjct: 8 TEYVLHSLLWL-VGNPEPVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66 Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117 RPA+ I++L VV A E + C F G CG+ +V+ +A A Sbjct: 67 ARPAEDISVLAVVDAVEGRKSLFNCQEIRGRCALFDERPPRWATQGVCGIHAVMLRAEQA 126 Query: 118 FFDVLTQYSIECLVRN 133 + + S+ L R+ Sbjct: 127 MRQEMARTSLADLARS 142 >gi|46578685|ref|YP_009493.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603749|ref|YP_968149.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46448097|gb|AAS94752.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563978|gb|ABM29722.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] gi|311232556|gb|ADP85410.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 165 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG R+L+ A+H + P + +A IS+ +L K+ +PL +AG++ + RG Sbjct: 1 MRILTNSRYGTRMLLDIALHQRERPVLMKDVAARLSISQKYLEKLSRPLKEAGLLVSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA +IT+ DVV+ E + C + C C + ++ +A F Sbjct: 61 PTGGHMLGRPAVEITVGDVVRVMEGGDELVGC-GRDEAACSHAPGCLTRMIWKECSHAMF 119 Query: 120 DVLTQYSIECLVR 132 L + + L+R Sbjct: 120 ARLDAITFDELLR 132 >gi|121535527|ref|ZP_01667335.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] gi|121305855|gb|EAX46789.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] Length = 146 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 13/127 (10%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A + + +AE I + FL KI++ L +AG++++ RG Sbjct: 1 MQLNQATDYAFRIVLHLACLPSGQVVNGQTLAEQENIPQRFLLKIMRSLTQAGLIKSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-------DCPLVGSCG-----L 107 GG L R ++ITI D++ A E + C A +CP+ G L Sbjct: 61 TDGGFALARRPEEITIWDIICAIEGEVTIHRCLADRTACSKHCTHECPVHAVLGQIQAEL 120 Query: 108 TSVLRKA 114 + LR+A Sbjct: 121 VAALRQA 127 >gi|331092089|ref|ZP_08340920.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402290|gb|EGG81861.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium 2_1_46FAA] Length = 131 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TDYGIR+++Y +N+ + +AE I + ++ K+ + L A IV + +G Sbjct: 1 MQLSATTDYGIRIVLYLIKNNEIISS-GVLAEQLEIPKTYVLKVTKKLELANIVTSYQGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG+ L QIT+ DV+ A E + + +C Sbjct: 60 NGGIGLAGDPAQITLWDVISAVESTTVINKCMEQE 94 >gi|254460966|ref|ZP_05074382.1| transcriptional regulator, putative [Rhodobacterales bacterium HTCC2083] gi|206677555|gb|EDZ42042.1| transcriptional regulator, putative [Rhodobacteraceae bacterium HTCC2083] Length = 110 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 1/105 (0%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 ISE +L KI L K G V + GR GG+ L I+I V++A +++ VAECF S+ Sbjct: 4 ISENYLVKIATQLSKGGFVVSESGRGGGLTLAVLVVDISIGAVLRALKKNEPVAECFGSN 63 Query: 96 KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 C ++ +C L L +A AFF L YS+ + + + +K + Sbjct: 64 T-SCAILPTCSLRGPLLEAQEAFFAALVGYSLADVAKAKGYLKDL 107 >gi|168178952|ref|ZP_02613616.1| RRF2 family protein [Clostridium botulinum NCTC 2916] gi|170756920|ref|YP_001783003.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|226950815|ref|YP_002805906.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto] gi|169122132|gb|ACA45968.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|182670202|gb|EDT82178.1| RRF2 family protein [Clostridium botulinum NCTC 2916] gi|226841169|gb|ACO83835.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto] Length = 133 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A+ D PN+I ++AE +S +L KIL LVK G++ + Sbjct: 1 MKYSKATNYALHTMLFLAM--DTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G GG L + + I+ LD++ A E + +C +D P C + V+ A Sbjct: 59 SGVNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCC----LDSP--SECVIKKVMLSAEKK 112 Query: 118 FFDVLTQYSIECLVR 132 + L I LV+ Sbjct: 113 MEEELRNQKISDLVK 127 >gi|325122368|gb|ADY81891.1| hypothetical protein BDGL_001305 [Acinetobacter calcoaceticus PHEA-2] Length = 164 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 9/117 (7%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D P +AE +S F+ KI L KAG+V G RGG L RPA +I+ LD+V Sbjct: 3 NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRGGYLLARPAHEISFLDIV 62 Query: 80 KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 A E + EC F + D G C + +V+ +A A D L +++ Sbjct: 63 NAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 119 >gi|313114322|ref|ZP_07799857.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623377|gb|EFQ06797.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 143 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ + H + +IA ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLSEHQSEKYVPLKEIAARQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ +++ TE S C + C + +C T + K L+ Sbjct: 61 KGGGYRLTRSPDQYTVGEILMLTEGSLAPVSCLTPNATPCSRMANC-RTYEMWKGLD--- 116 Query: 120 DVLTQY 125 D+++ Y Sbjct: 117 DLISNY 122 >gi|302539851|ref|ZP_07292193.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653] gi|302457469|gb|EFL20562.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653] Length = 152 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DY +R + A+ +D + IA + + FL IL L + G+V + RG Sbjct: 1 MRISAKADYAVRAALELAVAADDTSLKAEVIAASQGVPHKFLEGILGDLRRGGLVVSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 +GG RL RPAD+ITI DV++ Sbjct: 61 GKGGYRLARPADEITIADVIR 81 >gi|270158822|ref|ZP_06187479.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968] gi|289166385|ref|YP_003456523.1| hypothetical protein LLO_3073 [Legionella longbeachae NSW150] gi|269990847|gb|EEZ97101.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968] gi|288859558|emb|CBJ13523.1| putative conserved hypothetical protein [Legionella longbeachae NSW150] Length = 153 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG V++Y A H IA ++ + KIL+ L AG++ +VRG Sbjct: 2 LRISKLADYGTVVMVYLARHAQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L RPA +I++ ++ A EE EC A H C L C + R A Sbjct: 62 TGGYQLRRPATEISVSQIIFALEEHRGFTECSA-HPNGCSLQDVCTIQGNWRLISQAIET 120 Query: 121 VLTQYSIECLVR 132 L S+ L + Sbjct: 121 ALDSVSLATLAK 132 >gi|222099072|ref|YP_002533640.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] gi|221571462|gb|ACM22274.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] Length = 138 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 12/139 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC--CISELFLFKILQPLVKAGIVETVRGR 60 T R++Y +R+++ A D +++I E + F KIL L K+GIVET RG+ Sbjct: 2 FTMRSEYALRLMIVMAKEYDRYLSMTEILEKAKNSVPREFAEKILYTLRKSGIVETKRGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG RL RP +I + D++ F+ + A D CP C + S+ ++ Sbjct: 62 TGGYRLARPPKEIRVSDII-------FLLDRKARVFFDMPGCPDELDCVIRSLWKRVEEE 114 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL ++E LV+ + Sbjct: 115 IEKVLGSVTLEDLVKEQEE 133 >gi|77919457|ref|YP_357272.1| putative Fe-S cluster regulator protein [Pelobacter carbinolicus DSM 2380] gi|77545540|gb|ABA89102.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 147 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y +R ++ ++ N D P IA+ IS FL +IL L + IV +VRG Sbjct: 1 MRLSTKAQYAVRAMVRLSLENADTPVSSKAIADLEGISVTFLEQILAKLRRGKIVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L RPA++I + +++++ EE+ C Sbjct: 61 PGGGFVLARPAEEIRVDEIIESVEEALMPVACM 93 >gi|315301845|ref|ZP_07872874.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596] gi|313629782|gb|EFR97886.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596] Length = 138 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKTVGVKELAIKQNVSPTYLSKVLTMLVKASFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG +L +PA+ I+ LDV++A E Sbjct: 61 VNGGYKLAKPANDISFLDVIQAIE 84 >gi|188584942|ref|YP_001916487.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349629|gb|ACB83899.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 155 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 5/145 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ + +YG+R L++ A +N+ P + +I++ IS +L +I L + +V +VRG Sbjct: 5 VKLSTKGEYGVRALVHLACNYNEGPISLREISKIEDISYQYLEQIFLDLRRNSLVLSVRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKAL 115 +GG L +IT+ DV++A E C A S +C +C V + Sbjct: 65 AKGGYTLASHPKEITVGDVIRAVEGPIAPVSCVAKSTNSENTECDRSSTCAPRGVWLELR 124 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKI 140 + +VL +++++ L + I+K+ Sbjct: 125 DRISEVLDEFTLQDLAVTDNDIEKL 149 >gi|297620718|ref|YP_003708855.1| putative HTH-type transcriptional repressor [Waddlia chondrophila WSU 86-1044] gi|297376019|gb|ADI37849.1| putative HTH-type transcriptional repressor [Waddlia chondrophila WSU 86-1044] Length = 144 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ ++Y +R+++ A + + ++A+ +SE + KILQ L +AG+V+ +G Sbjct: 2 LSSTSEYALRIMVILAHQKENSFLKGKELAKETKVSEAYSAKILQLLNRAGLVQAQKGLG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101 GG L R AD+I++ D++ A + EC A HK CPL Sbjct: 62 GGYLLSRSADEISLFDIINAVDPFTRFDECPLGIAEHKTLCPL 104 >gi|224823937|ref|ZP_03697046.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224604392|gb|EEG10566.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 160 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ H + P ++ I+E IS +L ++ L +A +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMLDLALRHGNGPVTLAGISERQSISLSYLEQLFGKLRRAELVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + A+QI++ D++ A +E +C + +C C +T L LNA Sbjct: 61 PGGGYTLAKSAEQISVADIITAVDEPVDATQCGG--RENCHDNHRC-MTHDLWTNLNATI 117 Query: 119 FDVLTQYSIECLV 131 FD L++ ++ LV Sbjct: 118 FDYLSKVTLFSLV 130 >gi|299143924|ref|ZP_07037004.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518409|gb|EFI42148.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 137 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 48/95 (50%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY R+ Y A + +IA ISE F +IL+ L AGI RG Sbjct: 1 MRITQETDYAFRICGYLAQNEGQVIGAPKIASEKKISERFTLRILRKLNLAGITTAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG L +P ++IT+ D++ A + V +C S Sbjct: 61 AGGYLLNKPKEEITLYDIIVAVDGPIIVNKCIDSE 95 >gi|257056284|ref|YP_003134116.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586156|gb|ACU97289.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 149 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L K TD +R++M A+ + ++A+A + K++ L + G+VE R Sbjct: 1 MRLMKGTDLALRIVMRLAVVGERESAPTTREVADAVSVPYSHAAKVVTRLQRLGVVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V C CPL +C L + LR A +AF Sbjct: 61 GRSGGLALTAAGRAASLGRLVRELEGVGDVVGC--EDDPPCPLRTACRLRAALRSAQDAF 118 Query: 119 FDVLTQYSIECLV 131 + L +IE LV Sbjct: 119 YAALDPLTIEDLV 131 >gi|226362111|ref|YP_002779889.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226240596|dbj|BAH50944.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 160 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 8/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ ++ + V++ A + +D P + +A + + +L K LQ LV+AGI+ +V G Sbjct: 1 MRMSRGVEWAMHVVLSLAWVDDDRPVSTAALARSYDLPAPYLNKQLQALVRAGILTSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKA---TEESFFVAECFASH-KIDCP---LVGSCGLTSVLR 112 GG L R A I++LDVV A EE+F E A D P L C ++ +R Sbjct: 61 AAGGFVLTRSAKHISVLDVVTAIEGAEEAFRCTEIRAQGVGADMPAGQLSMPCAVSMAMR 120 Query: 113 KALNAFFDVLTQYSIE 128 KA A+ L S++ Sbjct: 121 KADLAWRRELAGQSVD 136 >gi|323694029|ref|ZP_08108212.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum WAL-14673] gi|323501915|gb|EGB17794.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum WAL-14673] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R ++Y A + ++I EA ++++F+ K+L+ L AG+V + G Sbjct: 10 MQLTMTTDYALRCMLYLAGKEGLSSS-TEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG RL + A +I +LD++ E++ + C Sbjct: 69 TGGYRLAKRAKEIVLLDIILLFEKTMKINRCL 100 >gi|317488261|ref|ZP_07946828.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|316912643|gb|EFV34185.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] Length = 186 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+R DY R+L + +S IAE I F I LVK G+++TVRG Sbjct: 1 MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116 RGG+ L C PA +T+L+V++A + ++ C C C + + A LN Sbjct: 61 RGGLALNCDPA-AVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLN 118 Query: 117 AFFDVLT 123 A+F +T Sbjct: 119 AYFGAIT 125 >gi|325291884|ref|YP_004277748.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3] gi|325059737|gb|ADY63428.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3] Length = 167 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 10/108 (9%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84 + +AE +S +L K LQ L AGIV TV G +GG RL R D+IT+LD+V A E Sbjct: 29 AALAEFHGVSTSYLLKHLQLLSGAGIVSTVPGPKGGYRLARTTDKITLLDIVLAVEGPQP 88 Query: 85 SFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQYSI 127 +F AE + PL G CG+ + + KA A+ L + SI Sbjct: 89 AFRCAEI--RQRGPNPLPGRYFTKPCGINAAMLKAEKAYRAELAKTSI 134 >gi|313898036|ref|ZP_07831575.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] gi|312957064|gb|EFR38693.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] Length = 130 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ Y R L+ AI+ D+P I++I ISE +L I L KAG + + RG Sbjct: 1 MKLSTKSRYAARCLIDLAIYGKDHPLSITEIGAREEISERYLELIFATLKKAGFIASARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 +GG +L RP + ITI D++ E Sbjct: 61 SQGGYQLIRPIESITIYDIIALME 84 >gi|300024335|ref|YP_003756946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] gi|299526156|gb|ADJ24625.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 184 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +Y + L++ + +A+ IS FL KI L KAGIVE G RGG RL Sbjct: 9 EYALHCLLWLTEPVEQRPSSRDLADLQGISPAFLAKIFAKLEKAGIVEASGGIRGGYRLA 68 Query: 68 RPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAF 118 RP +I++L+VV A E S + +C F + G C + +V+ +A Sbjct: 69 RPTSKISVLNVVDAVEGSKPLFDCQEVRGRCALFENKPPKWATKGVCEIHAVMLRAEKVL 128 Query: 119 FDVLTQYSIECL 130 D L++ ++ L Sbjct: 129 RDELSKTTLASL 140 >gi|225408021|ref|ZP_03761210.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme DSM 15981] gi|225042454|gb|EEG52700.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme DSM 15981] Length = 135 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ A H D + +IA ISE +L +L+ LV+ ++ +RG Sbjct: 1 MMISTRGRYALRVMLDLAEHCADGYIPLKEIAHRQDISEKYLEIVLKVLVRNNLLTGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R + T+ ++++ TE S C +CP +C V +K Sbjct: 61 KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACADEGNTECPRRETCPSRPVWQKLDTLIN 120 Query: 120 DVLTQYSIECLVRN 133 D L ++E L+++ Sbjct: 121 DYLDGITLEDLLKS 134 >gi|291545758|emb|CBL18866.1| rrf2 family protein (putative transcriptional regulator) [Ruminococcus sp. SR1/5] Length = 137 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 9/142 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY +RV+ A+ + +S+I E I+ F +KIL+ L AG+VE RG Sbjct: 1 MFITRESDYAMRVIR--ALMWEPRLSVSEICERESITAPFAYKILKKLQNAGLVEGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +++++ ++ A + + EC + CP G G+ L D Sbjct: 59 HGGYALKRDPEELSLYEIYSAIDPDMSIIECL-NGTYQCPRNGQDGVPCHAHDELQEIQD 117 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++R R S+K +F Sbjct: 118 QLW-----TMLR-RKSMKDLFG 133 >gi|227872831|ref|ZP_03991143.1| possible transcription regulator [Oribacterium sinus F0268] gi|227841326|gb|EEJ51644.1| possible transcription regulator [Oribacterium sinus F0268] Length = 174 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + L+ A N +S ++AE IS +L +I+ +VK G +++VR Sbjct: 28 MMISTKGRYALSTLIDIAEQEKKGNPVSIKEVAERQGISVKYLEQIIALMVKGGFLKSVR 87 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L + A I++ D++ A E + +C +C SC + ++ A Sbjct: 88 GAKGGYLLLKEAKDISVGDILDAAEGTLSPVDCVKEGS-NCERSASCPTFPLYKEIDEAI 146 Query: 119 FDVLTQYSIECLVR 132 + V+ +YS+E L++ Sbjct: 147 YAVVNRYSLEDLLQ 160 >gi|212710633|ref|ZP_03318761.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM 30120] gi|212686714|gb|EEB46242.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM 30120] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ADQI + +V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNR 134 L+ S++ LV+N+ Sbjct: 120 SFLSSISLDELVKNQ 134 >gi|125973237|ref|YP_001037147.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003715|ref|ZP_05428703.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281417437|ref|ZP_06248457.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|125713462|gb|ABN51954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|255992276|gb|EEU02370.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281408839|gb|EFB39097.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|316940532|gb|ADU74566.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 143 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+HN + P + IAE + E +L ++ L KAG + +VRG Sbjct: 1 MWLSTKGRYGLKAMLDLALHNGEGPVALKSIAERQNLPENYLEQLFATLKKAGHITSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L + D ITI ++++ E S +C Sbjct: 61 AQGGYLLSKDPDSITIGSILRSLEGSLAPVDC 92 >gi|307323873|ref|ZP_07603082.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306890322|gb|EFN21299.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 158 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + DY +R L A D P IA + I FL + + L +AG+V + RG Sbjct: 23 MQISAKADYAVRALAELAADTDRPLTCEAIATSQGIPFRFLKAVFRDLRQAGLVRSQRGC 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R ++T+ D+V A + +F E P + GL V R + Sbjct: 83 EGGYWLARDPAEMTLADIVLAVDGAFLTLRGERLDDLGYHGP---AAGLPGVWRGMEDHV 139 Query: 119 FDVLTQYSIECLVRNR 134 VLT ++ LVR R Sbjct: 140 RQVLTATALSDLVRER 155 >gi|94496618|ref|ZP_01303194.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] gi|94423978|gb|EAT09003.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY + VLM A + R+ + +A I K++ L AG++E+ R Sbjct: 1 MRLSSFADYAV-VLMSAAARHCGGARMNATTLAAETGIPLPTAQKLVSRLSGAGLLESSR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GGVRL RP IT+ DVV+A E + C DC L C + + A NA Sbjct: 60 GTGGGVRLSRPPATITLADVVEAVEGPIAMTACAEMGAHDCNLERDCRIRPHMNVANNAI 119 Query: 119 FDVLTQYSIECLVR 132 L +I L R Sbjct: 120 RQALAGVTIASLTR 133 >gi|298530491|ref|ZP_07017893.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] gi|298509865|gb|EFI33769.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] Length = 143 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ YG R+++ A HN+ P RI IA+ ISE +L KI++ L KAG+V+ +RG Sbjct: 1 MKLSTTIRYGTRLMLDMAEHNETGPIRIKTIAQRQGISEKYLEKIVRLLRKAGLVDGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GG L P ++IT+ +++A + + C Sbjct: 61 PGGGYVLAVPPEKITMGAILEAVQGRIELCPCLGE 95 >gi|193212159|ref|YP_001998112.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum NCIB 8327] gi|193085636|gb|ACF10912.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum NCIB 8327] Length = 142 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L K TDY +R L+ + +D I++ I FL +ILQ L++ G+VE+ G G Sbjct: 4 LNKETDYAVRALISLGMKSDGWVSARAISDEQAIPYQFLRRILQELIRNGLVESKEGAGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92 GV+L + +I + DV++ + ++EC Sbjct: 64 GVKLAKEPGEIGVADVIEIFQGKVQLSECM 93 >gi|315647231|ref|ZP_07900344.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315277433|gb|EFU40762.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 161 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K TDY + L++ + N I +++ +SE +L KI+ L + GIV V G Sbjct: 1 MQFSKSTDYALHALIHLGLSERNNNIGIKELSATLGVSETYLSKIMSKLRQDGIVRAVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + +QIT LDV++ E + EC Sbjct: 61 VNGGYELAKSPEQITFLDVIQVIEGRQHLFEC 92 >gi|153872299|ref|ZP_02001233.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS] gi|152071233|gb|EDN68765.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS] Length = 130 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI H P ++ I++ IS +L ++ L K G+V++ RG Sbjct: 1 MRLTTKGRYAVTAMLDLAINHTKGPITLADISQRQGISLSYLEQLFSRLRKRGLVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL R AD I I DV+ A +E+ +C Sbjct: 61 PGGGYRLSRTADTIVIADVIAAVDETVDATKC 92 >gi|315924766|ref|ZP_07920983.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] gi|315621665|gb|EFV01629.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] Length = 139 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + YG VL C + + Y P I +IA+ S+ +L ++ L KAG++ ++ Sbjct: 1 MKLSTKGQYG--VLAMCELASHYGKGPMSIKEIADKQHFSDAYLEQLFSKLKKAGLIRSL 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L R I + +V+ A E C A +DC SC ++ N+ Sbjct: 59 RGAHGGYQLTREPSAIVVGEVIDAVEGPIEFCGCDA-EAVDCNRAQSCPTVNLWMDVQNS 117 Query: 118 FFDVLTQYSIECLV 131 V+ S++ L+ Sbjct: 118 IRSVIDHRSLQDLI 131 >gi|167772123|ref|ZP_02444176.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM 17241] gi|167665921|gb|EDS10051.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM 17241] Length = 130 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T DY +R++ A H + S ++ A ++ F KIL+ LV GIV + +G Sbjct: 1 MYITLEADYAVRIVDCLAQHQMRMDAKS-LSAATGVTLRFALKILRKLVAEGIVRSYKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 +GG L RPA +I + +V++ E ++ C C V C Sbjct: 60 QGGYELARPAGEIALGEVIEIVEGPIVISRCVGDDTFQCSRVEKCA 105 >gi|283957139|ref|ZP_06374603.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|283791315|gb|EFC30120.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 1336] Length = 136 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 +GG L + +Q TI ++V + E + V EC CP +C L +L N Sbjct: 60 KGGFALIKEPNQYTIKEIVNSAEKKDISVFECSGGT---CPNNKEKNCTLMPMLVNLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 + L ++E +++N Sbjct: 117 VDEFLDSITLEDIMKNN 133 >gi|227484972|ref|ZP_03915288.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237127|gb|EEI87142.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 133 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ R YG+R + Y A + D P +S+I+E +SE +L ++++ L K G++++ Sbjct: 1 MKLSTRGRYGLRAICYIAENQDKGFIP--VSEISEKLNLSENYLEQLVRVLKKDGLIKSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALN 116 RG +GG ++ ITI ++++ E +EC S K DC + L S L +N Sbjct: 59 RGPKGGYKIKSDLSSITIGQILRSLEGDMTTSEC-VSGKFDCSEKCDAYDLFSKLDYLIN 117 Query: 117 AFFDVLTQYSI 127 A D +T +I Sbjct: 118 AAIDSITLENI 128 >gi|257460500|ref|ZP_05625601.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] gi|257441831|gb|EEV16973.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] Length = 137 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + + M C + + I+ IS FL KILQ L +AG++ + +G Sbjct: 1 MLFTKASEYAL-LSMICIAGKEESMDVDSISSELGISRSFLAKILQNLARAGLLNSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP 100 +GG L R AD+IT+ +++K+ E V +C A CP Sbjct: 60 KGGFVLARNADKITLSEIIKSAERRKATVFDCTAEGIDACP 100 >gi|329934735|ref|ZP_08284776.1| putative transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] gi|329305557|gb|EGG49413.1| putative transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] Length = 152 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ P + +AE IS FL IL L + G+V + RG Sbjct: 1 MRISARADYAVRAVVELAVRQGGGPVKAEAVAEVQDISHKFLEGILGDLRRGGLVASRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL R A+ IT+ D+++A + Sbjct: 61 GNGGYRLAREAEAITVADIIRAVD 84 >gi|218282015|ref|ZP_03488327.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989] gi|218217002|gb|EEC90540.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989] Length = 142 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 8/126 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L+ A HND + IA IS+ +L +I+ L K+ +V++ RG Sbjct: 1 MKISTKGRYALRLLIDLAQHNDSGFITLKDIAARQNISKKYLEQIVPILTKSQMVQSNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 +GG +L + DQI + DV+ ATE + C S CP C GL V++ Sbjct: 61 FQGGYKLAKNIDQICVYDVLVATEGNLSCVACLDSDVNTCPRKEDCATLYIYEGLNQVIK 120 Query: 113 KALNAF 118 L Sbjct: 121 TYLKGI 126 >gi|163790053|ref|ZP_02184488.1| transcriptional regulator [Carnobacterium sp. AT7] gi|159874753|gb|EDP68822.1| transcriptional regulator [Carnobacterium sp. AT7] Length = 137 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ N+ R+ +A+ IS +L KIL L KAG++ + G Sbjct: 1 MKYSKATNYALHSMVHLAMESNNEAVRVEDLAKHQRISPTYLSKILTKLAKAGLITSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL ++ T LD+++A E + C SH D C + + A + Sbjct: 61 VKGGYRLLLSPEKCTFLDIIQAIEGQESLLNCTMSH--DGKWNRDCLIERAVADAEDKMK 118 Query: 120 DVLTQYSI 127 D L +I Sbjct: 119 DELAHKTI 126 >gi|302039295|ref|YP_003799617.1| putative transcription factor IscR [Candidatus Nitrospira defluvii] gi|300607359|emb|CBK43692.1| putative Transcription factor IscR [Candidatus Nitrospira defluvii] Length = 159 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 13/141 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAGI 53 + L+K+ DYG+ L + A N Y + +IAE I L K+LQ L K+GI Sbjct: 2 LKLSKKADYGLMALQHIA-SNQYGDVAQARVVNTKEIAEEYHIPVELLAKVLQTLSKSGI 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSV 110 +E+ G +GG L + +ITI V+++ E + +C SH+ D C C + + Sbjct: 61 IESHNGPKGGYLLGKNPREITIAHVLESLEGPLGIMDC--SHEKDGDACMQREHCNIRTP 118 Query: 111 LRKALNAFFDVLTQYSIECLV 131 L K ++ + +L +++ ++ Sbjct: 119 LLKIQSSIYQLLNNMTLQDMM 139 >gi|78776353|ref|YP_392668.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78496893|gb|ABB43433.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas denitrificans DSM 1251] Length = 134 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 43/74 (58%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +I +IA + + +L ++L L +AG+VE++RG +GG L RP I ILD++ A E Sbjct: 26 PMQIKEIALNANVPQNYLEQLLGKLRRAGLVESIRGAKGGYILARPPQDIKILDILMALE 85 Query: 84 ESFFVAECFASHKI 97 + + + H I Sbjct: 86 DDLKIVDTLVEHPI 99 >gi|256783279|ref|ZP_05521710.1| hypothetical protein SlivT_02175 [Streptomyces lividans TK24] Length = 146 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +TK TD +R +M A+ D P ++AE + K + L G+VE RGR Sbjct: 1 MTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++ +V+ E V +C + CPL G+C L LR A AF+ Sbjct: 61 GGGLTLTDLGRRASVGWLVRELEGEAEVVDCEGDNP--CPLRGACRLRRALRDAQEAFYA 118 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 119 ALDPLTVTDLV 129 >gi|168181991|ref|ZP_02616655.1| oligopeptide transport system permease protein OppB [Clostridium botulinum Bf] gi|237796821|ref|YP_002864373.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657] gi|182674817|gb|EDT86778.1| oligopeptide transport system permease protein OppB [Clostridium botulinum Bf] gi|229263736|gb|ACQ54769.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657] Length = 133 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A+ D PN+ + ++AE +S +L KIL LVK G++ + Sbjct: 1 MKYSKATNYALHTMLFLAM--DTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G GG L + + I+ LD++ A E + +C +D P C + V+ A Sbjct: 59 SGVNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCC----LDSP--SECVIKKVMLSAEKK 112 Query: 118 FFDVLTQYSIECLVR 132 + L I LV+ Sbjct: 113 MEEELRNQKISDLVK 127 >gi|154250436|ref|YP_001411261.1| BadM/Rrf2 family transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154372|gb|ABS61604.1| transcriptional regulator, BadM/Rrf2 family [Fervidobacterium nodosum Rt17-B1] Length = 141 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVR 58 M +T +++Y I++++ A+ N N +I + C + F KIL L + GI+ R Sbjct: 1 MAITMKSEYAIKIMILIAVENKRVN-AREIVKKCRERLPLEFAEKILADLARNGILHAYR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG L + D+IT+ DVV + + +CF SC + + L Sbjct: 60 GRGGGYELAKKLDEITVYDVVSSVDNPSDTIKCFVDINDKATSPESCTVNKIWESVLEKM 119 Query: 119 FDVLTQYSIECLVRN 133 ++L +++ L + Sbjct: 120 QEILKSITLKELTED 134 >gi|34557102|ref|NP_906917.1| hypothetical protein WS0691 [Wolinella succinogenes DSM 1740] gi|34482817|emb|CAE09817.1| LIN1550 PROTEIN [Wolinella succinogenes] Length = 137 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 9 YGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 YG+ L Y ++ P+ +IS+I++ I + +L +IL L KAG ++++RG +GG L Sbjct: 10 YGLGALYYLTLNLHKPSIQISEISQNTNIPQNYLEQILANLKKAGFLKSIRGPKGGYALA 69 Query: 68 RPADQITILDVVKATEESFFVAEC 91 P +QI + D+++A E EC Sbjct: 70 MPPEQIIVYDILEALEGGLCAIEC 93 >gi|315186460|gb|EFU20220.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6578] Length = 138 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG++ L++ A+ H P + +IAE ISE FL + L AG+V + +G Sbjct: 1 MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L RP +IT+ +VV A E F A D P+ L K + + Sbjct: 61 KGGGYTLRRPPHRITLREVVTAFEPYVIFPLSHEADEGPDAPIWAD------LEKHIQVW 114 Query: 119 FDVLTQYSIECLVRNRSSI 137 + + + LV+ R I Sbjct: 115 MEGRSLEELVGLVKRRRGI 133 >gi|328955720|ref|YP_004373053.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] gi|328456044|gb|AEB07238.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] Length = 150 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 57/93 (61%), Gaps = 2/93 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++Y A R++ A C IS+ +L ++++PL++AG++++VR Sbjct: 1 MLISSKGRYALRLMIYIAAFGGDQGRVALREIAACEDISQKYLEQLVRPLMRAGLLKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 G+RGG L +PA+++ D+++ E + C Sbjct: 61 GKRGGYILGKPAEEVRAGDILRVAEGTTAPVAC 93 >gi|329906564|ref|ZP_08274419.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae bacterium IMCC9480] gi|327547254|gb|EGF32103.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae bacterium IMCC9480] Length = 148 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D G+RVL+Y A ++I+ +IA I L K+ L + G V+ R Sbjct: 1 MRLTRYSDIGLRVLIYLARSGTRESQITVAEIAAQFDIPINHLIKVAGHLARTGWVDATR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL A + + ++ E + +C + C L C L L+ + AF Sbjct: 61 GRNGGLRLAIDATTLHVGTILLELEGKDELIDCDG---LACHLRKDCILRDALKVGMQAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 +D + Y++ L ++ Sbjct: 118 YDAMNGYTLADLCDGKTG 135 >gi|153812327|ref|ZP_01964995.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174] gi|149831489|gb|EDM86576.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174] Length = 134 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 9/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RVL A+ + +++I E I+ F +KIL+ L K+G+V RG Sbjct: 1 MLITRECDYAVRVLR--AMAEEKRVSVNEICEKELITAPFAYKILKKLQKSGMVRGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L DQIT+ DV + F+ +C DC + G + L + Sbjct: 59 HGGYSLNCDLDQITLYDVYTTIDPGMFIIDCLEP-GYDCARNSADGQNCSVHCELAEIQE 117 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L C + R S+KK+ N Sbjct: 118 EL------CRMLKRKSLKKLING 134 >gi|326330461|ref|ZP_08196769.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] gi|325951736|gb|EGD43768.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] Length = 151 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 9/127 (7%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + H P ++AE +S+ +L K LQ L +AGIV GR GG L Sbjct: 6 GVEWSLHCCVVLSHAPGPVASGRLAELLGVSKTYLAKHLQALARAGIVRPSEGRDGGYEL 65 Query: 67 CRPADQITILDVVKATE---ESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120 R D++T+LDVV+A E +F E + P CG+ V+ A A+ Sbjct: 66 TRAPDEVTVLDVVQAVEGRRPAFRCTEIRQQGLLAAPPERCRSMCGIAKVMADAEEAWRA 125 Query: 121 VLTQYSI 127 L +I Sbjct: 126 SLAGVTI 132 >gi|237808765|ref|YP_002893205.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] gi|237501026|gb|ACQ93619.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] Length = 171 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 4 MRLTSKGRYAVTAMLDVALHAELGPVPLADISERQGISLSYLEQLFARLRKNGLVSSVRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL ADQI + ++ A ES C + C C LT L + L+A Sbjct: 64 PGGGYRLGADADQIAVGKIIAAVNESVDATRCHG--ESGCQGGVQC-LTHSLWRDLSARI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 D L + ++ LVR ++ +K+I Sbjct: 121 SDFLNEITLGELVR-QAEVKRI 141 >gi|149190102|ref|ZP_01868379.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1] gi|148836132|gb|EDL53092.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1] Length = 168 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL A I I V+ A +ES +C + K DC C LT L + L++ Sbjct: 61 PGGGYRLGAEASDIAIGTVIAAVDESVDATKC--AGKGDCQGGTRC-LTHTLWRDLSSRI 117 Query: 119 FDVLTQYSI-ECLVRN 133 D L ++ E +V N Sbjct: 118 SDFLNNITLGELMVDN 133 >gi|326329630|ref|ZP_08195952.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] gi|325952626|gb|EGD44644.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] Length = 152 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 21/143 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ ++DY +R L+ A D ++ A I FL IL L KAG+V + RG Sbjct: 1 MRVSAKSDYALRALIEMAAREDGKAVSAEELGRAQEIPHGFLQAILADLRKAGVVISQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R A +++ DV++A +D PLV GL N Sbjct: 61 QSGGWRLARKASDVSVADVIRA---------------VDGPLVSVYGLRPEA-VTYNERA 104 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 DVL I R S++++F Sbjct: 105 DVLQHVWIAA----RDSLREVFE 123 >gi|251772796|gb|EES53357.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum ferrodiazotrophum] Length = 157 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + LTK+ DY + L M A + N + IA I L K++Q L KAG++++ Sbjct: 2 LKLTKKVDYALLALNLMAQAREGETSN-VRDIAGIYRIPPEILAKVMQKLSKAGLIQSHN 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L PA++I++L V+ A E + C DC C + S L + N Sbjct: 61 APKGGYSLKIPAEKISVLKVLTAVEGPVGIVSCSDGSDKDCQQRDQCDIRSPLERLQNNI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143 L SI L + + +K + + Sbjct: 121 LWFLEALSIRELGQEPTVMKGVTDG 145 >gi|325579030|ref|ZP_08148986.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus parainfluenzae ATCC 33392] gi|325159265|gb|EGC71399.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus parainfluenzae ATCC 33392] Length = 151 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHAGTNPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL ADQI+I V+ A E+ V C K +C C S+ + + Sbjct: 61 PGGGYRLALSADQISIGMVISAVNENIDVTRCLG--KGNCKGGVECLTHSLWQDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV ++ K Sbjct: 119 DFLDEITLAELVEKKTGKHK 138 >gi|147676569|ref|YP_001210784.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146272666|dbj|BAF58415.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 151 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R YG+R ++ A + ++ P + Q+AE ISE +L +++ L K G+V +VR Sbjct: 1 MKFSTRARYGLRAMVDLAQNYASNEPIPLFQVAERQGISEGYLEQLMTYLRKGGLVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117 G +GG L R +IT ++++ E +C + + C +C + + + Sbjct: 61 GAQGGYLLAREPSRITAGEIIRCLEGPLSPTDCVSEDDPEFCDRADACVTRLLWERVRES 120 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 VL S+E L +N I+ Sbjct: 121 VASVLDNTSLEDLCKNADKIR 141 >gi|262274800|ref|ZP_06052611.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886] gi|262221363|gb|EEY72677.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886] Length = 174 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H++ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSEAGPVPLADISERQGISLSYLEQLFSRLRKAGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL A++I + V+ A +ES +C K DC C LT L + L+A Sbjct: 61 PGGGYRLGVSANEIAVGMVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSA 115 >gi|268593201|ref|ZP_06127422.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rettgeri DSM 1131] gi|291311249|gb|EFE51702.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rettgeri DSM 1131] Length = 165 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQSGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ADQI + +V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNR 134 L+ S++ LV+N+ Sbjct: 120 SFLSSISLDELVKNQ 134 >gi|261856769|ref|YP_003264052.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261837238|gb|ACX97005.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 167 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ IA+ +S +L ++ L +AG+V++VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHDHGDPTALADIADRQELSLSYLEQLFAQLRRAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG +L RP+ +I + ++V A +E V C S + DC Sbjct: 61 PGGGYQLTRPSTEINVAEIVIAVDEDVDVTRC--SGRGDC 98 >gi|71066031|ref|YP_264758.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039016|gb|AAZ19324.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter arcticus 273-4] Length = 170 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ D +S IA+ IS +L ++ L K G+V ++ Sbjct: 1 MRLTTRGRYAVTALLDLALQTSQQDSAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 RG GG L +P DQI ++ ++ A +ES +C Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC 94 >gi|323698961|ref|ZP_08110873.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. ND132] gi|323458893|gb|EGB14758.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans ND132] Length = 147 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT R+ YG R+L+ A+H N P A+ +S +L K+++ L +AG V+ R Sbjct: 1 MKLTTRSRYGTRLLLDIALHSENGSPVPSKDTADREGLSLKYLEKLIKMLKQAGYVKGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R + I+I +V + + V C CP C S+ A A Sbjct: 61 GPNGGNVLVRAPEDISIGEVARILDGEEQVLGCEGDPST-CPRAAVCLKRSIWDDASLAM 119 Query: 119 FDVLTQYSIECLVRN 133 + +L YS+ L+++ Sbjct: 120 YRMLDSYSLADLMKD 134 >gi|159184340|ref|NP_353521.2| hypothetical protein Atu0493 [Agrobacterium tumefaciens str. C58] gi|159139656|gb|AAK86306.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 167 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 10/108 (9%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84 + +AE +S +L K LQ L AGIV TV G +GG RL R D+IT+LD+V A E Sbjct: 29 AALAEFHGVSTSYLLKHLQSLSNAGIVTTVPGPKGGYRLARTTDKITLLDIVLAVEGPQP 88 Query: 85 SFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQYSI 127 +F AE + PL G CG+ + + KA + L + SI Sbjct: 89 AFRCAEI--RQRGPNPLPGRYFTKPCGINAAMLKAEKVYRAELAKTSI 134 >gi|257784202|ref|YP_003179419.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] gi|257472709|gb|ACV50828.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] Length = 150 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 Y +R + A+H + + + ++E IS +L +++ + KAG V+++RG+ GG RL R Sbjct: 11 YALRAMADLAVHEGWVS-LGDVSERQNISRKYLEQVIALMHKAGYVDSLRGKGGGYRLTR 69 Query: 69 PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR---KALNAFFDVLT 123 + T+ ++++A E + A C ++ CP + SC ++ R + ++F D T Sbjct: 70 KPEDYTLGEILRAAEGNLAPASCLNCTNTTLCPQMESCTTINIWRDLGRMTSSFLDSKT 128 >gi|221315013|ref|ZP_03596818.1| hypothetical protein BsubsN3_14952 [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 110 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L D IT D+++ E + +C+ Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKCW 93 >gi|116622770|ref|YP_824926.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225932|gb|ABJ84641.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 147 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 8/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRIS--QIAEACCISELFLFKILQPLVKAGIVET 56 M LT+ DY +RV+++ A P R+S +++ + E FL K+LQ L + G++ + Sbjct: 1 MQLTRAADYAVRVMIHLA---GLPPGTRVSRSELSTSAECPEQFLCKVLQSLTRVGLIAS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG GG L ++L+VV+A E + C +H C C V +A Sbjct: 58 HRGNTGGFELEERHRSASVLEVVQAIEGPIHLNVCL-NHDHGCSRQSWCPAHDVWAEAQR 116 Query: 117 AFFDVLTQYSIECLVRNRSS 136 A +VL +I + SS Sbjct: 117 ALNEVLGHATISGMAHTLSS 136 >gi|294629007|ref|ZP_06707567.1| transcriptional regulator [Streptomyces sp. e14] gi|292832340|gb|EFF90689.1| transcriptional regulator [Streptomyces sp. e14] Length = 157 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TD +RVLM A+ D P ++A + KI+ L G++ R Sbjct: 9 MRLLRSTDMALRVLMRLAVAGETDTPT-TREVAADMGVPYTHAAKIVAELQHRGLLTARR 67 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L +I +V+ E VA+C CPL C L LR+A AF Sbjct: 68 GRGGGLSLTEAGRGASIGAIVRTMEGEGDVADCTGG-DTPCPLNSDCRLRGALRRAQEAF 126 Query: 119 FDVLTQYSIECLV 131 + L ++ +V Sbjct: 127 YAALDPLTVADMV 139 >gi|271964996|ref|YP_003339192.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508171|gb|ACZ86449.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 142 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +RV M A+ + + Q+AE I K++ L G+VE RG Sbjct: 1 MRLTKFTDLALRVTMRLAVAEQGTSLTTRQVAEVMAIPYTHTAKVIARLQHLGVVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ++ +V+ E V C + CPL +C L LR A AF+ Sbjct: 61 RGGGLELTVAGRTASLGWLVRELEGEEEVVAC--EGETPCPLRAACRLRGALRGAQQAFY 118 Query: 120 DVLTQYSIECLV 131 L ++ LV Sbjct: 119 ASLDPLTVNDLV 130 >gi|212696195|ref|ZP_03304323.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM 7454] gi|212676824|gb|EEB36431.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM 7454] Length = 134 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S I+ + E +L ++++ L K +V + RG Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKKNNLVISARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 +GG +L R A IT+ DV++A E ++C A Sbjct: 61 AKGGYKLSRSASDITVGDVLRALEGEMTSSQCVA 94 >gi|300023866|ref|YP_003756477.1| Rrf2 family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525687|gb|ADJ24156.1| transcriptional regulator, Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 523 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + + A H D +S +AE + +L ++ PL ++G+VE+ RG Sbjct: 1 MELTTKGRYAVMAMADLAAHADRTAVPLSSVAERQHLPLSYLEQLFVPLRRSGLVESARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 R GG RL + ++I+I V+ A EE C + C + C GL S L +A + Sbjct: 61 RAGGYRLSKKPEEISIAAVMAAVEEVTHFTRC-TDNDPRCSVGTPCLTHGLWSALSRATS 119 Query: 117 AFFDVLT 123 F + ++ Sbjct: 120 EFLESVS 126 >gi|116626733|ref|YP_828889.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229895|gb|ABJ88604.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 158 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ +YG+R L+ + + I ++++A +S + K+L+ L K G V+ RG Sbjct: 1 MKLSANEEYGLRCLVRIGYAGEGGSLTIPEMSQAEGVSPAYAAKVLRVLRKGGFVKAARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA---ECFASHKIDCPLVGSCGLTSVLRKALN 116 + GG L RPA+ I I DV+ F + E A C C + S+ R Sbjct: 61 KDGGYTLARPAEAIVIGDVMDVLGGRIFESSFCESHAGQAAICTRSIDCSVRSLWRAVQV 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A VL++ ++ L++N + Sbjct: 121 AVDQVLSKATLRDLLQNEEEM 141 >gi|292491985|ref|YP_003527424.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus halophilus Nc4] gi|291580580|gb|ADE15037.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus halophilus Nc4] Length = 166 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+ IS +L ++ L K G+V++ RG Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPITLADISRRQGISLSYLEQLFARLRKKGLVDSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL R A++I+++DV+ A +ES C Sbjct: 61 PGGGYRLSREAEKISVIDVISAVDESVDATRC 92 >gi|332668756|ref|YP_004451763.1| BadM/Rrf2 family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337793|gb|AEE44376.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas fimi ATCC 484] Length = 152 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 5/86 (5%) Query: 1 MHLTKRTDYGIRV--LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + DY +R + + H D P+ + + +S FL +IL L +AGIV +V Sbjct: 1 MRVSAKADYAVRACAELAASPHGDPVPSEVLAAGQDIPVS--FLERILGDLRRAGIVASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATE 83 RGR GG RL RPA +T+ +V++A + Sbjct: 59 RGRSGGYRLARPAGDVTLAEVIRAVD 84 >gi|56963070|ref|YP_174797.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909309|dbj|BAD63836.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 139 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + + + ++ + Q+A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMAFLTLNEKNEAIGVEQLAKMQNLSPTYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +GG RL + + + LDV++A E + C H + P C + V+ A Sbjct: 61 VKGGYRLLKRQKETSFLDVIQAIEGQTSLFHCSLDHN-ELPHNHGCLIEQVMMNA 114 >gi|332296703|ref|YP_004438625.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] gi|332179806|gb|AEE15494.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] Length = 152 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R ++ A+ N D + I+ IS +L +I L K G++ +VRG Sbjct: 1 MKISTRGRYALRFMIDLALQNSDQFIALKDISGRQEISVKYLEQITSLLGKYGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116 ++GG +L +PA Q TI ++++ TE + C + +CP C L +N Sbjct: 61 QQGGYKLAKPASQYTIGEILRITEGNLAPVACLDTAVNECPRCNQCKTLPFWEGLAATIN 120 Query: 117 AFFDVLT 123 ++ D +T Sbjct: 121 SYLDSVT 127 >gi|167759052|ref|ZP_02431179.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704] gi|167663459|gb|EDS07589.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704] Length = 173 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 75/139 (53%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A +++ P I+ I+ ISE +L +++ L KAG+V+++RG Sbjct: 22 MKLSTKGRYGLRAIIDLARYSEEEPVSINNISIRQDISERYLEQLVALLKKAGLVKSIRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L + A++I++ DV++A E S +C A + + C C V +K ++ Sbjct: 82 ATGGYVLAKRAEEISVGDVLRALEGSLEPVKCAAFYSDEGCMASDGCVTKYVWQKINDSI 141 Query: 119 FDVLTQYSIECLVRNRSSI 137 + + ++ LVR I Sbjct: 142 NKTVDEIMLDELVRESKMI 160 >gi|77918499|ref|YP_356314.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77544582|gb|ABA88144.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 132 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +T+ DY IR +++ + +P + +++ I FL KIL L+ A +V + RGR Sbjct: 2 ITREADYCIRTILHLSRPEQRKHPVPVDELSRQMTIPAPFLRKILAKLINADLVHSHRGR 61 Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ + +QI++L++++ A + + +C S + C G+C + ++K N Sbjct: 62 NGGLTIKGEPEQISLLEILQVADGKGLLLNQCLESEGV-CTHQGTCTVHDAMKKLQNVME 120 Query: 120 DVLTQYSIECLV 131 + L + + L+ Sbjct: 121 NHLKAITFDQLI 132 >gi|229133660|ref|ZP_04262486.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228649695|gb|EEL05704.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] Length = 133 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + I+ LD++ A E + EC H+ C Sbjct: 59 SGPKGGYSLSSNWEDISFLDIIHAIEGKTSLFECCLHHEPGC 100 >gi|261406703|ref|YP_003242944.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283166|gb|ACX65137.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 161 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K DY + L++ A D+ I +++ +SE +L KI+ L + GIV V G Sbjct: 1 MQFSKSVDYALHALIHLAQSERDHNIGIKELSATLGVSESYLSKIMSKLRQDGIVRAVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L +PA QIT L+V++ E + EC Sbjct: 61 VNGGYELAKPARQITFLEVIQVIEGRQQLFEC 92 >gi|307718973|ref|YP_003874505.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6192] gi|306532698|gb|ADN02232.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6192] Length = 138 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG++ L++ A+ H P + +IAE ISE FL + L AG+V + +G Sbjct: 1 MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L RP +IT+ ++V A E F A D P+ L K + + Sbjct: 61 KGGGYTLRRPPHRITLREIVTAFEPYVIFPLSHEADEGPDAPIWAD------LEKHIQVW 114 Query: 119 FDVLTQYSIECLVRNRSSI 137 + + + LV+ R I Sbjct: 115 MEERSLEELVGLVKRRRGI 133 >gi|256393946|ref|YP_003115510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256360172|gb|ACU73669.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 159 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + ++G+ L+ A ++ P ++AE + +L K LQPLV+AGI+ + G Sbjct: 1 MQMGEGVEWGLHCLLALAWLEEHTPVATGRLAEIFELPPEYLKKRLQPLVRAGILASSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKAT---EESFFVAEC---FASHKIDCPLVGS-CGLTSVLR 112 RGG L R ++IT++DVV A EE+F E A + G CG+ +R Sbjct: 61 ARGGYALARRPEEITLMDVVAAVEGREEAFRCTEIRKQGAGALAEADEFGEPCGIAKAMR 120 Query: 113 KALNAFFDVLTQYSI 127 +A A+ L ++ Sbjct: 121 RAEMAWRRELAAQTV 135 >gi|221133857|ref|ZP_03560162.1| transcriptional regulator, BadM/Rrf2 family protein [Glaciecola sp. HTCC2999] Length = 160 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P + I+ IS +L ++ L K +VE++RG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQGPVSLYDISMRQEISLSYLEQLFSKLRKQHLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL +PA++I + +V+ A ES +C + K DC C L L ++ Sbjct: 61 PGGGYRLGKPANEIAVGEVIAAVNESIDATKC--NGKADCQGGEKCLTHNLWQDLSDRIS 118 Query: 117 AFFDVLT 123 F D +T Sbjct: 119 KFLDNIT 125 >gi|28210751|ref|NP_781695.1| RRF2 family protein [Clostridium tetani E88] gi|28203189|gb|AAO35632.1| RRF2 protein family [Clostridium tetani E88] Length = 144 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A+ + D P I I+E ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVRAMIDLALNYGDIPISIKSISERQNISEYYLEQLFATLRKADLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 +GG L R I+I ++++ E ++ C + +C + SC Sbjct: 61 AQGGYLLSREPKDISIAEIIETLEGPVELSNCVSQG--ECENMDSC 104 >gi|323140322|ref|ZP_08075254.1| putative HTH-type transcriptional regulator IscR [Phascolarctobacterium sp. YIT 12067] gi|322415180|gb|EFY05967.1| putative HTH-type transcriptional regulator IscR [Phascolarctobacterium sp. YIT 12067] Length = 144 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI H + +A+ IS+ +L +I+ L KAG V++ RG Sbjct: 1 MKISTKGRYALRLMLDLAINHTGSYIPLKTVAQRQNISDKYLEQIIHQLSKAGFVQSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG RL D+ T+ ++++ E S C K C SC GL +++A++ Sbjct: 61 AQGGYRLAHTPDEYTVGEILRTVEGSLAPVSCLDC-KTPCDQFDSCITIGLYKKIQQAID 119 Query: 117 AFFDVLTQYSI 127 D T + + Sbjct: 120 GVVDHTTLHDM 130 >gi|302389692|ref|YP_003825513.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] gi|302200320|gb|ADL07890.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] Length = 150 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 5/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + AI + + P + IA+ ISE +L +++ L KAG+V++VRG Sbjct: 1 MKLSTKGRYGLKAMFDLAINYGEGPIPLKSIADRQNISEHYLEQLIMILRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSV---LRKAL 115 +GG L + +IT+ DV++ E + +C ++C +C + V +R ++ Sbjct: 61 AQGGYMLAKKPAEITVGDVLRVLEGPIGLVDCVLEQDPLECDKAENCIMRIVWEKIRDSM 120 Query: 116 NAFFDVLT 123 A D +T Sbjct: 121 IAAMDSIT 128 >gi|317153664|ref|YP_004121712.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis Aspo-2] gi|316943915|gb|ADU62966.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis Aspo-2] Length = 145 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ Y R+L+ A+H D P R S +A+ I+ F+ +I++PL +AG+V +VRG Sbjct: 1 MKLSARSRYAARLLLALAMHKGDGPVRTSDLADRTGITAQFIEQIIRPLKQAGMVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF- 118 GG L R IT+ ++V+ E S +A C C G C + +A A Sbjct: 61 ASGGHLLDRQPAAITLGEIVRTMEGSANIASCLDCDTA-CDRTGDCLTRTAWERASRAME 119 Query: 119 --FDVLT 123 D +T Sbjct: 120 RELDAIT 126 >gi|257462826|ref|ZP_05627232.1| RRF2 family protein [Fusobacterium sp. D12] gi|317060455|ref|ZP_07924940.1| rrf2 family protein [Fusobacterium sp. D12] gi|313686131|gb|EFS22966.1| rrf2 family protein [Fusobacterium sp. D12] Length = 138 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116 G GG RL +IT+ V ++ V +C S H+ C CG T + K + Sbjct: 61 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKET-ICGSTCIWSKLDH 119 Query: 117 AFFDVLTQYSIECLVRN 133 A +L+ ++E + N Sbjct: 120 ALTKILSDTTLEDFINN 136 >gi|183599755|ref|ZP_02961248.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827] gi|188022016|gb|EDU60056.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827] Length = 165 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFARLRKNELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ADQI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDADQIFVAQVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ LV+N+ I Sbjct: 120 SFLSSISLDELVKNQEVI 137 >gi|149193764|ref|ZP_01870862.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter mediatlanticus TB-2] gi|149135717|gb|EDM24195.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter mediatlanticus TB-2] Length = 134 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T Y ++ L+ + + D P ++ I+E I + FL K+LQ L + G V + +G Sbjct: 1 MLFTKSTAYALQALIELSKY-DKPIDVTTISEKTAIPKPFLAKLLQNLSRNGFVYSFKGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GS-CGLTSVLRKALNAF 118 GG L + +I +LD+ K E+ + + K DC GS C L K + Sbjct: 60 NGGFVLAKNPKEIKLLDIFKNIEDKDTLVFYCSKSKDDCTRNRGSICELQPFFEKMEDEI 119 Query: 119 FDVLTQYSIECLVRN 133 +L +Y++ +RN Sbjct: 120 AIILDKYTLADFIRN 134 >gi|111017203|ref|YP_700175.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110816733|gb|ABG92017.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 153 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 9/127 (7%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + + P +++AE +S+ +L K LQ L +AG+V GR GG L Sbjct: 6 GVEWALHCCVVLSQAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGRDGGYVL 65 Query: 67 CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120 R + IT+LDVV+A TE +F E + P +CG+ V+ A A+ Sbjct: 66 TRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQCRSACGIAKVMAGAEQAWRA 125 Query: 121 VLTQYSI 127 L+ +I Sbjct: 126 SLSSVTI 132 >gi|217979263|ref|YP_002363410.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] gi|217504639|gb|ACK52048.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] Length = 144 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + YG++ L++ A+ + P + IA I FL IL L KAGI+ + +G+ G Sbjct: 2 LSNKGKYGLKALIHLAVF-EGPCLAADIAAHNQIPRKFLDAILLELRKAGILNSKKGKGG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNAF 118 G L RPAD+IT +++ + C + +DCP +C + ++ ++ Sbjct: 61 GYHLARPADKITAGQIIRILDGPLAPIACASRTAYRKCLDCPDEEACAVRDLMLDVRDSM 120 Query: 119 FDVLTQYSIECLVR--NRSSI 137 +L + SI L + NR ++ Sbjct: 121 ALILDRTSIAALSKRGNRDNL 141 >gi|296110959|ref|YP_003621340.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832490|gb|ADG40371.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 168 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + +++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSNAVEQSLVVLVMLALQKDELPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 + GG +L RP QIT+LDV +A E Sbjct: 61 KEGGFKLARPVSQITLLDVYQAIE 84 >gi|156973367|ref|YP_001444274.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116] gi|189044753|sp|A7MU47|ISCR_VIBHB RecName: Full=HTH-type transcriptional regulator iscR gi|156524961|gb|ABU70047.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116] Length = 168 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL A I I V+ A +ES +C K DC C LT L + L++ Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSSRI 117 Query: 119 FDVLTQYSIECLVRN 133 D L ++ L+++ Sbjct: 118 SDFLNNITLGELMKD 132 >gi|117929268|ref|YP_873819.1| BadM/Rrf2 family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649731|gb|ABK53833.1| transcriptional regulator, BadM/Rrf2 family [Acidothermus cellulolyticus 11B] Length = 156 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 8/147 (5%) Query: 1 MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 MH++ +TDY +R ++ A D + +IA+ + FL IL L +A +VE+ Sbjct: 1 MHISAKTDYAMRAMLVLAHAARERADAWVKAEEIADEQRLPRKFLEAILADLRRARLVES 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKAL 115 +RG GG RL +PA I + DV++A + AE + G + GL V Sbjct: 61 LRGAEGGYRLAKPASAIYVADVMRAVDGPL--AEVRGLRPENVRYEGAAAGLQDVWVAVR 118 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142 VL + S+E V NR+ K + + Sbjct: 119 AGLRAVLERVSVED-VANRALPKPVQD 144 >gi|257465488|ref|ZP_05629859.1| putative HTH-type transcriptional regulator [Actinobacillus minor 202] gi|257451148|gb|EEV25191.1| putative HTH-type transcriptional regulator [Actinobacillus minor 202] Length = 150 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ AIH + P ++ IA+ IS +L ++ L + GIV +VRG Sbjct: 1 MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + +I++ ++ A ES V +C S +C +C LT L + L Sbjct: 61 PGGGYKLEKSPKEISVGMIIAAVNESVDVTKCKGSG--NCRKDSTC-LTHTLWERLEEQI 117 Query: 120 DV-LTQYSIECLVRNRS 135 V L S+E LV+ S Sbjct: 118 GVFLNTVSLEDLVKENS 134 >gi|254562344|ref|YP_003069439.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens DM4] gi|254269622|emb|CAX25593.1| putative transcriptional regulator, Rrf2 family [Methylobacterium extorquens DM4] Length = 150 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 3/102 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A+ IS L KI Q LV+AG+VE +GR GGVRL R A +I + +V E V Sbjct: 17 VAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREIRLGRLVADLEGVGTVV 76 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 +C + CPL+G C L A AFF L + ++ +V Sbjct: 77 DC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVV 115 >gi|218887632|ref|YP_002436953.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758586|gb|ACL09485.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 152 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT RT Y RVL+ A+H + P + ++ IS FL +IL+ L +AG+ + RG Sbjct: 1 MKLTARTRYAARVLVALAVHGTEGPLTTTALSRHTDISVQFLEQILKDLRRAGLTASARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 GG RL P +I++ VV+ E +AE Sbjct: 61 AMGGHRLALPPTKISLGTVVRLMEGGIRIAE 91 >gi|315925094|ref|ZP_07921311.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] gi|315621993|gb|EFV01957.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] Length = 145 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H D + IA IS+ +L +I+ + I+ T RG Sbjct: 1 MKISTKGRYALRMMLDLAYHQDEGYIALKDIARRQNISKKYLEQIVSLMRGPDILATSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG RL RP T+ ++++ TE S C CP C V + Sbjct: 61 YRGGYRLARPPRDYTVGEILRLTEGSLAPVACLEEGADKCPRAAGCETLPVWQGLYTRIT 120 Query: 120 DVLTQYSIECLV 131 D L +++ ++ Sbjct: 121 DYLDSLTLQDII 132 >gi|256545144|ref|ZP_05472510.1| iron-sulfur cluster assembly transcription factor IscR [Anaerococcus vaginalis ATCC 51170] gi|256399185|gb|EEU12796.1| iron-sulfur cluster assembly transcription factor IscR [Anaerococcus vaginalis ATCC 51170] Length = 134 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S I+ A + E +L ++++ L + +V + RG Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNALKLPENYLEQLIRILKRNNLVISARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 +GG +L R + +IT+ DV++ E +EC A Sbjct: 61 AKGGYKLSRNSSEITVGDVLRVLEGEMTSSECVA 94 >gi|83647156|ref|YP_435591.1| iron-sulfur cluster assembly transcription factor IscR [Hahella chejuensis KCTC 2396] gi|83635199|gb|ABC31166.1| iron-sulfur cluster assembly transcription factor IscR [Hahella chejuensis KCTC 2396] Length = 159 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H N P ++ I+ IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHGNSGPVSLADISARQGISLSYLEQLFAKLRRSRLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG +L RP + + ++++A ES C K DC G LT L + L+ Sbjct: 61 PGGGYKLARPLGETAVAEIIEAVNESIDATRC--GRKGDCQ-GGEICLTHHLWQDLSERI 117 Query: 119 FDVLTQYSIECLVRNRS 135 D L+ S+E LV +R+ Sbjct: 118 HDYLSSISLEELVASRA 134 >gi|77165125|ref|YP_343650.1| Iron-sulphur cluster assembly transcription factor IscR [Nitrosococcus oceani ATCC 19707] gi|254434832|ref|ZP_05048340.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus oceani AFC27] gi|76883439|gb|ABA58120.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207091165|gb|EDZ68436.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus oceani AFC27] Length = 166 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG RL R A +I+I+DV+ A +E+ C +C C LT L + L+ Sbjct: 61 PGGGYRLSREAGKISIIDVITAVDENMDATRCGGLK--NCQENQRC-LTHDLWEDLSRQI 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 ++ L + ++ LV+ R IKK+ Sbjct: 118 YEFLARITLGELVQ-RDDIKKV 138 >gi|296131265|ref|YP_003638515.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena DSM 20109] gi|296023080|gb|ADG76316.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena DSM 20109] Length = 152 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC----ISELFLFKILQPLVKAGIVET 56 M ++ + DY +R CA P S +E I FL +I+ L + G+V + Sbjct: 1 MRVSAKADYAVRA---CAELASRPGGESVPSEVLAAGQDIPTSFLERIMGDLRRGGVVTS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE 83 VRGR GG L RPAD+IT+ DVV+A + Sbjct: 58 VRGRSGGYLLARPADEITVADVVRAVD 84 >gi|87118505|ref|ZP_01074404.1| rrf2 family protein [Marinomonas sp. MED121] gi|86166139|gb|EAQ67405.1| rrf2 family protein [Marinomonas sp. MED121] Length = 165 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P ++ I+ IS +L ++ L K +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDNGPVSLADISLRQGISLSYLEQLFAKLRKQTLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R DQI + +V A ES C K DC +C + + Sbjct: 61 PGGGYRLSRANDQIFVAQIVDAVNESVDATGCKG--KNDCQSGTTCLTHHLWCDLSDQIH 118 Query: 120 DVLTQYSIECLVRNR 134 D L+Q S+ LV + Sbjct: 119 DFLSQISLAQLVSRK 133 >gi|291559054|emb|CBL37854.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SSC/2] Length = 152 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A+++ D P IS IAE IS +L ++L L KAGI++++RG Sbjct: 1 MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 +GG L + I+ D+++ E +C A Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAA 94 >gi|291551330|emb|CBL27592.1| rrf2 family protein (putative transcriptional regulator) [Ruminococcus torques L2-14] Length = 572 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T TDY IR++ Y A + + S++++ + ++ KI + L +AGI++ G Sbjct: 1 MQITSTTDYAIRIVCYLAAQSQMIS-TSELSQELSVPSSYIPKITKKLKQAGIIKACEGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118 +GG ++ + + I++ DV+ TE + ++ C C + C + +L N + Sbjct: 60 KGGYQIAKQPENISLRDVISCTESTMAISRCLEKEG-GCSKNYIACCKVHQILMDLQNIY 118 Query: 119 FDVLTQYSIECLVR 132 + L I ++R Sbjct: 119 NNRLESVKISDIIR 132 >gi|239931665|ref|ZP_04688618.1| hypothetical protein SghaA1_25822 [Streptomyces ghanaensis ATCC 14672] gi|291440032|ref|ZP_06579422.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291342927|gb|EFE69883.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 151 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ +A A + K++ L G++ RGR Sbjct: 1 MRLLRSTDLALRVLMRLAVAGGSQPTTRDVAAAMDVPYTHAAKVVADLRHRGLLTARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L ++ +V+A E V +C S CPL C L LR+A AFF Sbjct: 61 GGGLTLTEKGRGASVGALVRAFEGEGDVVDCEGGSATAPCPLRSDCRLRGALRRAQEAFF 120 Query: 120 DVLTQYSIECLVRN 133 L ++ L + Sbjct: 121 ASLDPITVADLAAD 134 >gi|167765593|ref|ZP_02437657.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1] gi|317498547|ref|ZP_07956841.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] gi|167712778|gb|EDS23357.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1] gi|316894240|gb|EFV16428.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] Length = 149 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A+++ D P IS IAE IS +L ++L L KAGI++++RG Sbjct: 1 MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 +GG L + I+ D+++ E +C A Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAA 94 >gi|22298046|ref|NP_681293.1| hypothetical protein tlr0503 [Thermosynechococcus elongatus BP-1] gi|22294224|dbj|BAC08055.1| tlr0503 [Thermosynechococcus elongatus BP-1] Length = 145 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y + L M A P +I QIA I + +L +++ L + G++ + R Sbjct: 1 MELSAKSEYALLALLEMSAAYEQGEPLQIRQIAAMHNIPDRYLEQLMATLRRKGLIRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG L + QI+ILDV+ E + A D + + SV +A A Sbjct: 61 GARGGYVLAKAPWQISILDVLNCIE---GIESKLAQKPPDNGDLERSLIRSVWLEACKAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 DVL +Y+++ L R + +++ Sbjct: 118 NDVLKKYTLQDLCDRRQAYQQV 139 >gi|255321430|ref|ZP_05362590.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae RM3277] gi|255301583|gb|EET80840.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae RM3277] Length = 134 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y A D P+ + ++ IS+ FL KILQ L + GI+ + +G Sbjct: 1 MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILVSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAEC-FASHKIDCPLVGSCGLT---SVLRKAL 115 GG L + ++I+I ++++ E+ V EC ++ G C + S L+ + Sbjct: 60 NGGFMLAQKPEEISIKRIIESAEKRKMAVFECSISADSCASSKGGMCQIWPMFSALQSKI 119 Query: 116 NAFFDVLTQYSI 127 + F D +T +I Sbjct: 120 DDFLDTITLANI 131 >gi|15894952|ref|NP_348301.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024637|gb|AAK79641.1|AE007677_3 Predicted transcriptional regulator (HTH winged helix type) [Clostridium acetobutylicum ATCC 824] gi|325509089|gb|ADZ20725.1| transcriptional regulator (HTH winged helix type) [Clostridium acetobutylicum EA 2018] Length = 139 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH P I I+E ISE +L ++ PL K+G+++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGAEPVSIKSISERQKISEAYLEQLFVPLRKSGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 +GG L + I I ++ E +++C S D Sbjct: 61 SQGGYVLSKDPKDIHISNIFDVLEGPIEISDCVESDSCD 99 >gi|39997666|ref|NP_953617.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39984558|gb|AAR35944.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|307635053|gb|ADI85329.2| transcriptional regulator, IscR family [Geobacter sulfurreducens KN400] Length = 145 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ ++H++ P + IA+ I +L ++ L + IVE+VRG Sbjct: 1 MRLSTRAQYAVRAMVDLSLHSEGKPVALRDIAQREDIPLNYLEQLFNRLRRGSIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116 GG L R + I + ++V EE C K C +C SV L + + Sbjct: 61 PGGGYLLARESSAILVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHSVWEMLGERIR 120 Query: 117 AFFDVLTQYSIECLVRN 133 F D +T +E LVR+ Sbjct: 121 TFLDSIT---LEDLVRD 134 >gi|311894108|dbj|BAJ26516.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae KM-6054] Length = 145 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 46/83 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALVELACDTGRPLTCEAIASSQEIPFRFLKSVVGDLRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA +IT+LDVV+A + Sbjct: 61 EGGYWLGRPAAEITLLDVVRAVD 83 >gi|283781762|ref|YP_003372517.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440215|gb|ADB18657.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 152 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ Y +R + A + + P S++A A + E FL +IL+ LV GI+ + RG Sbjct: 1 MKLSRTVAYAVRATLQLAQLEAEGPVPCSRLASAGKMPERFLLQILRNLVTHGILRSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 GG L +PA +I++L+V++A E + Sbjct: 61 VDGGYSLVKPAGEISLLEVIEAIEGPY 87 >gi|310658027|ref|YP_003935748.1| transcriptional regulator [Clostridium sticklandii DSM 519] gi|308824805|emb|CBH20843.1| putative transcriptional regulator [Clostridium sticklandii] Length = 128 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + ++ Y + N +S +A IS +L KIL LVKA ++++ G Sbjct: 1 MKYTKATNYALHIMTYFVSQDGKENFSLSPLASHMNISPTYLSKILTQLVKANLIQSSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L +P +I+ DV++A E S + C Sbjct: 61 VNGGYSLRKPKSEISFYDVIQAIEGSNALFTC 92 >gi|59711223|ref|YP_203999.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding transcriptional repressor [Vibrio fischeri ES114] gi|59479324|gb|AAW85111.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding transcriptional repressor [Vibrio fischeri ES114] Length = 168 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117 GG RL A+QI + V+ A +ES +C K C C LT L + L++ Sbjct: 61 PGGGYRLGLKAEQIAVGMVISAVDESVDATKCHG--KEGCQGGTRC-LTHTLWRDLSSRI 117 Query: 118 --FFDVLT 123 F D +T Sbjct: 118 STFLDGIT 125 >gi|91215754|ref|ZP_01252724.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus torquis ATCC 700755] gi|91186220|gb|EAS72593.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus torquis ATCC 700755] Length = 171 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y I L+Y A N + P IS+IA+ I FL IL L KAG++ + +G+ Sbjct: 28 ISKKTKYAINALVYLAKRNGEGPIVISEIAQKEHIPRKFLESILLNLKKAGVLASKKGKG 87 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116 GG L + + I + DV++ E + C ++K +C +CG+ ++ + N Sbjct: 88 GGYYLLQNPEDINLADVMRLVEGPIALLPC-VTYKYYERCEECKDEETCGIRNIFYEVRN 146 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 ++L + ++ +++ S + Sbjct: 147 KTVELLKKANLAEIIKRESHL 167 >gi|15602182|ref|NP_245254.1| hypothetical protein PM0317 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720554|gb|AAK02401.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 154 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ N P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA++I++ V+ A E+ V C + DC C LT L K L+ Sbjct: 61 PGGGYQLGLPANRISVGMVINAVNENIDVTRCLG--RGDCQEGTEC-LTHSLWKELSLRI 117 Query: 120 DV-LTQYSIECLV-RNR 134 + L + ++E LV +NR Sbjct: 118 EAFLNEITLEELVEKNR 134 >gi|241760101|ref|ZP_04758199.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria flavescens SK114] gi|241319555|gb|EER55985.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria flavescens SK114] Length = 148 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L PA+QI I ++ A E+ +C + K +C C LT L + LN Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCNHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 118 NDYLSSVTLQSIIEQKN 134 >gi|50428399|dbj|BAD30045.1| hypothetical protein [Rhodococcus opacus] Length = 159 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 9/127 (7%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + + P +++AE +S+ +L K LQ L +AG+V GR GG L Sbjct: 12 GVEWALHCCVVLSQAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGRDGGYVL 71 Query: 67 CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120 R + IT+LDVV+A TE +F E + P +CG+ V+ A A+ Sbjct: 72 TRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQCRSACGIAKVMAGAEQAWRA 131 Query: 121 VLTQYSI 127 L+ +I Sbjct: 132 SLSGVTI 138 >gi|255066423|ref|ZP_05318278.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sicca ATCC 29256] gi|255049303|gb|EET44767.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sicca ATCC 29256] Length = 148 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L P QI I ++ A E+ +C S K +C C LT L + LN Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRSS 136 D L+ +++ ++ ++S Sbjct: 118 NDYLSSVTLQSIIEQKNS 135 >gi|261380293|ref|ZP_05984866.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria subflava NJ9703] gi|284796806|gb|EFC52153.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria subflava NJ9703] Length = 148 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L PA+QI I ++ A E+ +C + K +C C LT L + LN Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 118 NDYLSSVTLQSIIEQKN 134 >gi|261377488|ref|ZP_05982061.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria cinerea ATCC 14685] gi|269146218|gb|EEZ72636.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria cinerea ATCC 14685] Length = 148 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAIKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L P QI I ++ A E+ +C S K +C C LT L + LN Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRSS 136 D L+ +++ ++ ++S Sbjct: 118 NDYLSSVTLQSIIEQKNS 135 >gi|320104168|ref|YP_004179759.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319751450|gb|ADV63210.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida ATCC 43644] Length = 164 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T+R +Y +R Y A + Y + ++AEA + +L K+LQ L + G++ + RG GG Sbjct: 3 TQRVEYALRATAYLASLDGYNSTTEEVAEATKVPRAYLSKVLQELRRGGVIRSRRGVGGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKID----CPL 101 + L ++T+L VV+A E + C K CPL Sbjct: 63 IVLAIDPKELTLLRVVQAVEPLQRITTCPLGLKAHGARLCPL 104 >gi|310779512|ref|YP_003967845.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] gi|309748835|gb|ADO83497.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] Length = 140 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ R YG+R L+Y A N D RI +I++ IS +L +IL L K I+E Sbjct: 1 MKISTRIRYGLRALVYIAEQNRDFDRLVRIKEISKDQNISVQYLEQILFKLKKENIIEGK 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L +I + + + + + +C + + + C + + + NA Sbjct: 61 RGPNGGYKLIGDPKKINVFRLYEILDSDVKIVDCNENTENKSCVEEKCRTSCLWSRLDNA 120 Query: 118 FFDVLTQYSIECLVRNRS 135 D+L + +++ L+ N+ Sbjct: 121 LSDILKETTLDDLINNKE 138 >gi|157738370|ref|YP_001491054.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri RM4018] gi|315636657|ref|ZP_07891890.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] gi|157700224|gb|ABV68384.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri RM4018] gi|315479083|gb|EFU69783.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] Length = 137 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 29/135 (21%) Query: 9 YGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 YG+ + + H D P +I I+ I + +L ++L L KA +V ++RG RGG L Sbjct: 10 YGLSAMYELSKHKADTPMQIKDISANANIPQNYLEQLLSKLRKANLVNSIRGARGGYILA 69 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 + D+I I+D++ A E+ + + + + I LN FFD Sbjct: 70 KKPDEIKIVDILIALEDDIKIIDSKSENPI-----------------LNIFFD------- 105 Query: 128 ECLVRNRSSIKKIFN 142 +++S+KKIF+ Sbjct: 106 ----ESKNSMKKIFD 116 >gi|82701807|ref|YP_411373.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409872|gb|ABB73981.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira multiformis ATCC 25196] Length = 157 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H+ D P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALHSADGPVTLAGISERQKISLSYLEQLFGKLRRSKLVGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL +P +++++D++ A +E +C K +C C +T L LNA Sbjct: 61 PGGGYRLTKPMSEVSVVDIILAVDEPIDATQCGG--KENCHNDQRC-MTHDLWANLNARI 117 Query: 119 FDVLTQYSIECLVRN 133 D L ++E LV N Sbjct: 118 RDYLALVTLEQLVSN 132 >gi|240139920|ref|YP_002964397.1| putative transcriptional regulator, Rrf2 family [Methylobacterium extorquens AM1] gi|240009894|gb|ACS41120.1| putative transcriptional regulator, Rrf2 family [Methylobacterium extorquens AM1] Length = 150 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 3/102 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A+ IS L KI Q LV+AG+VE +GR GGVRL R A +I + +V E V Sbjct: 17 VAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREIRLGRLVADLEGVGTVV 76 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 +C + CPL+G C L A AFF L + ++ +V Sbjct: 77 DC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVV 115 >gi|217976745|ref|YP_002360892.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] gi|217502121|gb|ACK49530.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] Length = 149 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 9/132 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 LTK+ YG++ +++ A + P ++ IA A I + FL IL L AG V + +G Sbjct: 2 LTKKGKYGLKAMVHLAGY--LPGEATLVTDIATANQIPKKFLDTILGELRNAGFVNSKKG 59 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 + GG L RPA +I + +V+ + +C ++ DC CG+ ++ +A Sbjct: 60 KGGGYTLARPAHEIKVGHIVRVLDGPLAPIQCASATSYRRCDDCTDEKRCGVRLIMLEAR 119 Query: 116 NAFFDVLTQYSI 127 NA +VL ++ Sbjct: 120 NAIAEVLDNRTL 131 >gi|78484962|ref|YP_390887.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363248|gb|ABB41213.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira crunogena XCL-2] Length = 142 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P ++ I+E IS +L +I L K+G+V + RG Sbjct: 1 MKLTSKGRYAVTAMLDIALNQSKGPITLAMISERQDISLSYLEQIFAKLKKSGLVLSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL R A++I++ +V+ A E +C K +C C L + L +N Sbjct: 61 PGGGYRLSRDANEISVSEVIGAVNEDLEPRKCRG--KSNCQNGVQCLSHELWADLSGMIN 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140 F D +T ++ ++ RSSI+ + Sbjct: 119 EFLDGVT---LQQIIDRRSSIQSV 139 >gi|294013386|ref|YP_003546846.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676716|dbj|BAI98234.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 154 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + ++ A H + ++ I K++ L AG++E+ RG Sbjct: 1 MRLSSFADYAVVLMSAAARHCGVAKMNATTLSAETGIPLPTAQKLVSRLSAAGLLESSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL RP IT+ DVV+A E + C DC L C + + A NA Sbjct: 61 TGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIRPHMNVANNAIR 120 Query: 120 DVLTQYSIECLVRN 133 L +I L R Sbjct: 121 SALAGVTIASLARE 134 >gi|21674519|ref|NP_662584.1| hypothetical protein CT1702 [Chlorobium tepidum TLS] gi|21647711|gb|AAM72926.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 152 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L K TDY +R L+ + +D I++ I FL +ILQ L++ G+VE+ G G Sbjct: 4 LNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEGAGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92 GV+L + I + DV++ + ++EC Sbjct: 64 GVKLAKEPGDIGVADVIEIFQGKVQLSECM 93 >gi|295836021|ref|ZP_06822954.1| Rrf2 family protein [Streptomyces sp. SPB74] gi|295825840|gb|EFG64521.1| Rrf2 family protein [Streptomyces sp. SPB74] Length = 161 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + DY R L+ A ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MQISAKADYAARALVELASRPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA++I++LDVV+A + Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVD 83 >gi|228953101|ref|ZP_04115161.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806607|gb|EEM53166.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 133 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + EC K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100 >gi|256389588|ref|YP_003111152.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256355814|gb|ACU69311.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 151 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 8/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 MHL K TD +R+LM A+ H D +AEA + + K++ L G+V+ Sbjct: 1 MHLMKSTDLALRLLMRLAVVPPDTHPDELPTTRGVAEAMGAASTHMAKVVGKLQHLGLVQ 60 Query: 56 TVRGRRGGVRLCRPADQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 RGR GG+ L PA ++ ++ VV+ E S +A C CPL +C L S LR A Sbjct: 61 ARRGRGGGLVLT-PAGRVASVGAVVRTFEGSGDLAACVDGED-PCPLNAACRLRSALRAA 118 Query: 115 LNAFFDVLTQYSIE 128 AF+ L Q ++E Sbjct: 119 QEAFYASLDQLTVE 132 >gi|160893212|ref|ZP_02074000.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50] gi|156865295|gb|EDO58726.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50] Length = 145 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y I++++ A + N P +I IA IS+ +L +I+ L KA +V++VRG Sbjct: 1 MKISTKGRYAIKLMLDLATYYNGEPVKIKDIARRQHISDKYLEQIVAILNKASLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L + T+ +++ E S A+C ++ C C + K A Sbjct: 61 ARGGYMLYASPENYTVRQILETVEGSLAPADCVGANAAYCENRSMCVSVLIWEKLDQAIQ 120 Query: 120 DVLTQYSIECLVRNRSSI 137 DVL ++ LV ++++ Sbjct: 121 DVLEGITLADLVDWQNNL 138 >gi|52425782|ref|YP_088919.1| hypothetical protein MS1727 [Mannheimia succiniciproducens MBEL55E] gi|52307834|gb|AAU38334.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 150 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI+ D P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIAINAEDGPVTLSDISERQNISLSYLEQLFAKLRRHGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +P+ QI+I ++ A E+ V +C + +C C + + + Sbjct: 61 PGGGYQLGQPSGQISIGMIIAAVNENISVTKCLG--QGNCQGGKVCLTHHLWAELSDRIE 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 + L + ++E LV + S K Sbjct: 119 NFLNEITLEELVSKQHSQK 137 >gi|294083583|ref|YP_003550340.1| BadM/Rrf2 family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292663155|gb|ADE38256.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Puniceispirillum marinum IMCC1322] Length = 164 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 61/130 (46%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L + TDY I VL A D + +AE + + + K+ + LV A ++ T RG Sbjct: 2 IRLNRMTDYAIVVLGALAHKRDETVATALLAELTGLKQPTVAKVAKNLVAADLLVTQRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA I+++D+V+A E V +C C + C + + + A Sbjct: 62 NGGYRLVRPARSISLVDIVEAMEGPIAVTDCVDGAPDPCAVTHCCFMANNWNRVNLAIRG 121 Query: 121 VLTQYSIECL 130 L ++E L Sbjct: 122 ALEAVTLEDL 131 >gi|218283509|ref|ZP_03489499.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989] gi|218215777|gb|EEC89315.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989] Length = 480 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR++ Y A HN + S++++ I+ ++ KI + L A I+ G Sbjct: 1 MQLKSSTDYAIRIVCYLATHNGMIS-TSELSKQLYIATTYIPKIAKKLKDANIIVACEGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118 +GG L + A+ I++ +++ EE+ + C C V C + VL N + Sbjct: 60 KGGYTLAKRAEDISLKEIISCMEETMAINRCLERDGF-CSRNAVNHCRVHKVLLDVQNTY 118 Query: 119 FDVLTQYSIECLVR 132 + L + L+R Sbjct: 119 NNKLENIKVSDLIR 132 >gi|30020894|ref|NP_832525.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|206971747|ref|ZP_03232696.1| rrf2 family protein [Bacillus cereus AH1134] gi|218231378|ref|YP_002367487.1| rrf2 family protein [Bacillus cereus B4264] gi|229079960|ref|ZP_04212491.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|229128112|ref|ZP_04257094.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|229150981|ref|ZP_04279192.1| Transcriptional regulator [Bacillus cereus m1550] gi|229179055|ref|ZP_04306412.1| Transcriptional regulator [Bacillus cereus 172560W] gi|29896447|gb|AAP09726.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|206733132|gb|EDZ50305.1| rrf2 family protein [Bacillus cereus AH1134] gi|218159335|gb|ACK59327.1| rrf2 family protein [Bacillus cereus B4264] gi|228604423|gb|EEK61887.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228632541|gb|EEK89159.1| Transcriptional regulator [Bacillus cereus m1550] gi|228655387|gb|EEL11243.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|228703339|gb|EEL55794.1| Transcriptional regulator [Bacillus cereus Rock4-2] Length = 133 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + EC K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100 >gi|57237713|ref|YP_178961.1| RrF2 family protein, putative [Campylobacter jejuni RM1221] gi|86150257|ref|ZP_01068484.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152104|ref|ZP_01070316.1| rrf2 family protein (putative transcriptional regulator) [Campylobacter jejuni subsp. jejuni 260.94] gi|86153564|ref|ZP_01071768.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597557|ref|ZP_01100791.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|121612186|ref|YP_001000559.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|148926572|ref|ZP_01810254.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp. jejuni CG8486] gi|153952143|ref|YP_001398128.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei 269.97] gi|157415141|ref|YP_001482397.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni 81116] gi|167005492|ref|ZP_02271250.1| hypothetical protein Cjejjejuni_04615 [Campylobacter jejuni subsp. jejuni 81-176] gi|205356370|ref|ZP_03223135.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562504|ref|YP_002344283.1| putative transcriptional regulator [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283954445|ref|ZP_06371965.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni 414] gi|57166517|gb|AAW35296.1| RrF2 family protein, putative [Campylobacter jejuni RM1221] gi|85839373|gb|EAQ56635.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840889|gb|EAQ58139.1| rrf2 family protein (putative transcriptional regulator) [Campylobacter jejuni subsp. jejuni 260.94] gi|85843290|gb|EAQ60501.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249498|gb|EAQ72458.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|88190149|gb|EAQ94124.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112360210|emb|CAL35005.1| putative transcriptional regulator [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845266|gb|EDK22360.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp. jejuni CG8486] gi|152939589|gb|ABS44330.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei 269.97] gi|157386105|gb|ABV52420.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni 81116] gi|205345755|gb|EDZ32393.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp. jejuni CG8421] gi|283794062|gb|EFC32811.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni 414] gi|284926118|gb|ADC28470.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni IA3902] gi|307747784|gb|ADN91054.1| Rrf2 family protein (Putative transcriptional regulator) [Campylobacter jejuni subsp. jejuni M1] gi|315058324|gb|ADT72653.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp. jejuni S3] gi|315926477|gb|EFV05859.1| Rrf2 family protein, putative [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929508|gb|EFV08702.1| Rrf2 family protein (transcriptional regulator) [Campylobacter jejuni subsp. jejuni 305] gi|315932634|gb|EFV11565.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp. jejuni 327] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 +GG L + Q TI ++V + E + V EC CP +C L +L N Sbjct: 60 KGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGT---CPNNKEENCTLMPMLVNLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 + L ++E +++N Sbjct: 117 VDEFLDSITLEDIMKNN 133 >gi|296269083|ref|YP_003651715.1| BadM/Rrf2 family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091870|gb|ADG87822.1| transcriptional regulator, BadM/Rrf2 family [Thermobispora bispora DSM 43833] Length = 154 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A D P + ++A+ + +L IL + +AG+V RG Sbjct: 1 MRLSARVDYALRAAAELAAAGDGPTTVGELAQGQDMPPKYLENILLQMRRAGLVRGQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA+QIT+ DV++A + Sbjct: 61 EGGYVLARPANQITLADVIRAVD 83 >gi|325479354|gb|EGC82450.1| putative HTH-type transcriptional regulator CymR [Anaerococcus prevotii ACS-065-V-Col13] Length = 133 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S+++E +SE +L ++++ L G++++ RG Sbjct: 1 MKLSTRGRYGLRAMCYLASNEDRGYISVSEMSEKLNLSENYLEQLIRLLKNDGLIKSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG ++ + D+I++ +V++ E + +++C + Sbjct: 61 PKGGYKITKDLDEISVGEVLRVLEGNITMSDCVSGE 96 >gi|262372258|ref|ZP_06065537.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter junii SH205] gi|262312283|gb|EEY93368.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter junii SH205] Length = 157 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARIASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + ++ L+ Sbjct: 119 DYLAKITLADLI 130 >gi|288572865|ref|ZP_06391222.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568606|gb|EFC90163.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 140 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 13/140 (9%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +T YG+R ++ A P IS++A+ +SE +L ++ L K+G+V +VR Sbjct: 1 MKLSTKTRYGLRAMIDLARGYGTGRPISISEVAKNQTLSESYLEQLFSKLRKSGLVSSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117 G +GG L R +I +++ + E +A+C C G C + K ++ Sbjct: 61 GAQGGYLLSRDPKEILTSEIIDSLEGPISLADCVDYGT--CERGGCCPARFLWEKVSDSI 118 Query: 118 --------FFDVLTQYSIEC 129 +D++ +Y EC Sbjct: 119 ERVTSSTTLWDIIEEYDREC 138 >gi|77361587|ref|YP_341162.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas haloplanktis TAC125] gi|76876498|emb|CAI87720.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas haloplanktis TAC125] Length = 163 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L R AD I++ DV+ A +ES C S I C C L S L + Sbjct: 61 PGGGYLLGRKADAISVGDVINAVDESVDATRCQKSD-IGCQSGMRCLTHNLWSELSARIE 119 Query: 117 AFFDVLT 123 F D +T Sbjct: 120 EFLDNIT 126 >gi|251771117|gb|EES51701.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum ferrodiazotrophum] Length = 141 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 16/123 (13%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R DYGIR ++ A+ + ++IAE I + FL +I+ LVK G VE+ RG + Sbjct: 4 KLSQRVDYGIRAMVEIAVAGAHGMTGAKIAERSKIPKPFLKQIMATLVKNGFVESSRGPQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 G RL R I + +V+A E + + + +S AL FD Sbjct: 64 GKYRLLRDPADIRLSGIVRALEGTVSLYDP----------------SSPPGPALQTLFDK 107 Query: 122 LTQ 124 L+Q Sbjct: 108 LSQ 110 >gi|218708628|ref|YP_002416249.1| putative transcriptional regulator [Vibrio splendidus LGP32] gi|254806057|sp|B7VJS5|ISCR_VIBSL RecName: Full=HTH-type transcriptional regulator iscR gi|218321647|emb|CAV17599.1| Predicted transcriptional regulator [Vibrio splendidus LGP32] Length = 173 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL A I + V+ A +ES +C + DC C LT L + L++ Sbjct: 61 PGGGYRLGAEASDIAVGTVIAAVDESVDATKCHG--RADCQGGTRC-LTHTLWRDLSS 115 >gi|326791918|ref|YP_004309739.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium lentocellum DSM 5427] gi|326542682|gb|ADZ84541.1| transcriptional regulator, BadM/Rrf2 family [Clostridium lentocellum DSM 5427] Length = 149 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ +++ + + IAE +SE +L +++ L K +V + RG Sbjct: 1 MKLSTKGRYGLQAMVDLGVYSKEKHISLKSIAERLSMSENYLEQLMALLKKNKLVISQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L +P ++ITI +V++A E S +C C L G C SV K ++ Sbjct: 61 AQGGYALAKPPEEITIGEVLRALEGSLAPTDCTCKDGDTHCFLDGKCVTKSVWEKIRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V+ +++ L+ + I + Sbjct: 121 DRVVDNITLDQLMADYEKINE 141 >gi|296133417|ref|YP_003640664.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR] gi|296031995|gb|ADG82763.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR] Length = 149 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ + A H + P + IAE +SE +L +++ L KAG+V++VRG Sbjct: 1 MKVSTKGHYGVQAMFDLAQHFGEGPVSLKSIAERQGLSEPYLEQLIAVLRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R I + D+++ E EC + + C C SV K + Sbjct: 61 AQGGYILAREPRDIKVGDIIRVLEGPIAPVECVSQDDPEHCLKFDFCVTKSVWEKVKKSI 120 Query: 119 FDVLTQYSIECLVRN 133 +VL ++ ++++ Sbjct: 121 EEVLDSITLADMLKD 135 >gi|261345349|ref|ZP_05972993.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rustigianii DSM 4541] gi|282566392|gb|EFB71927.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rustigianii DSM 4541] Length = 165 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +DQI + +V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRGSDQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNR 134 L+ S++ LV+N+ Sbjct: 120 SFLSSISLDELVKNQ 134 >gi|114319885|ref|YP_741568.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226279|gb|ABI56078.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola ehrlichii MLHE-1] Length = 153 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + + TDYGI +L A + ++A+ + + + KIL+ L +AGI+ + RG Sbjct: 2 VRINRETDYGIGILTAMARAPEQRFSTVRLADQQGLPQPMVAKILKNLARAGILVSYRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L RPA QI++ +++ A E EC Sbjct: 62 KGGYGLARPARQISVAEIITALEGPIAFTEC 92 >gi|308050471|ref|YP_003914037.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632661|gb|ADN76963.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica DSM 9799] Length = 153 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAILDVALHSPEGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA +I + VV A +ES C K +C C S+ + Sbjct: 61 PGGGYLLGRPAAEIAVGMVVHAVDESVDATRCHG--KSNCQGGARCLTHSLWGDLSDRIS 118 Query: 120 DVLTQYSIECLVRNR 134 L S+ L+ NR Sbjct: 119 SFLNGISLADLMANR 133 >gi|307294771|ref|ZP_07574613.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] gi|306879245|gb|EFN10463.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] Length = 165 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 44/90 (48%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102 K++ L AG++E+ RG GGVRL RP IT+ DVV+A E + C DC L Sbjct: 55 KLVSRLSAAGLLESSRGTGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLE 114 Query: 103 GSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 C + + A NA L +I L R Sbjct: 115 QECRIRPHMNVANNAIRSALAGVTIASLAR 144 >gi|297588298|ref|ZP_06946941.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573671|gb|EFH92392.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 135 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCP 100 +GG L + +I++ ++++ EE F V EC A S + CP Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSAVPGLCSREDTCP 106 >gi|228921441|ref|ZP_04084764.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838214|gb|EEM83532.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 133 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQHVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + EC K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100 >gi|118497442|ref|YP_898492.1| transcriptional regulator [Francisella tularensis subsp. novicida U112] gi|195536133|ref|ZP_03079140.1| transcriptional regulator family protein [Francisella tularensis subsp. novicida FTE] gi|208779236|ref|ZP_03246582.1| transcriptional regulator family protein [Francisella novicida FTG] gi|254372803|ref|ZP_04988292.1| transcriptional regulator [Francisella tularensis subsp. novicida GA99-3549] gi|254374263|ref|ZP_04989745.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|118423348|gb|ABK89738.1| transcriptional regulator [Francisella novicida U112] gi|151570530|gb|EDN36184.1| transcriptional regulator [Francisella novicida GA99-3549] gi|151571983|gb|EDN37637.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|194372610|gb|EDX27321.1| transcriptional regulator family protein [Francisella tularensis subsp. novicida FTE] gi|208745036|gb|EDZ91334.1| transcriptional regulator family protein [Francisella novicida FTG] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119 Query: 121 VLTQYSIECLVRNR 134 +L++ SI +V N+ Sbjct: 120 LLSKTSIYDIVNNK 133 >gi|172058089|ref|YP_001814549.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990610|gb|ACB61532.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + +IA+ +SE +L +++ PL G+V++VRG Sbjct: 2 MKISTKGRYGLTIMIALAKGGEAKPLSLKKIAQMYDLSEHYLEQLIAPLRNGGLVKSVRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A++IT D+++ E V E +C V L ++ A++ Sbjct: 62 AYGGYKLGRSAEEITAGDIIRLLEGPLVVVEGD-----NCDEVTKRKLWDKIQSAVDQVL 116 Query: 120 DVLT 123 D T Sbjct: 117 DTTT 120 >gi|226953086|ref|ZP_03823550.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294650675|ref|ZP_06728029.1| HTH-type transcriptional regulator IscR family protein [Acinetobacter haemolyticus ATCC 19194] gi|226836178|gb|EEH68561.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292823466|gb|EFF82315.1| HTH-type transcriptional regulator IscR family protein [Acinetobacter haemolyticus ATCC 19194] Length = 157 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +IT+L++++A E+ C HK +C C + + + Sbjct: 61 ANGGYHLARNASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQDLSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + ++ L+ Sbjct: 119 DYLAKITLADLI 130 >gi|89072688|ref|ZP_01159253.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89051508|gb|EAR56962.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 183 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 13 MKLTSKGRYAVTAMLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG RL A I + V+ A +ES +C K DC C LT L L+ Sbjct: 73 PGGGYRLGEEASDIAVGMVIAAVDESVDATKCHG--KGDCQGGARC-LTHTLWHDLS 126 >gi|291548060|emb|CBL21168.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. SR1/5] Length = 142 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ ++++ + IA IS +L +++ L KAG+V++VRG Sbjct: 1 MKLSTRAKYGLKALIDLGLYSEKEAVSLQSIAGRQNISVSYLEQLMALLKKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L RPA++I++ D+++ E A C Sbjct: 61 AAGGYFLGRPAEEISVGDILRVLEGGLEAATC 92 >gi|83310153|ref|YP_420417.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944994|dbj|BAE49858.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 149 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ +++ A H P I+ +AEA I + FL IL + G++ + +G+ Sbjct: 2 LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA++I + D+V+ + C + DCP +C + +V++ +A Sbjct: 62 GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCPDEAACTVRAVMQDVRDA 121 Query: 118 FFDVLTQYSI 127 + S+ Sbjct: 122 IAAIPDNTSL 131 >gi|28897369|ref|NP_796974.1| hypothetical protein VP0595 [Vibrio parahaemolyticus RIMD 2210633] gi|81839883|sp|Q87S29|ISCR_VIBPA RecName: Full=HTH-type transcriptional regulator iscR gi|28805581|dbj|BAC58858.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|328472608|gb|EGF43471.1| hypothetical protein VP10329_12296 [Vibrio parahaemolyticus 10329] Length = 168 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL A I I V+ A +ES +C K DC C LT L + L++ Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 115 >gi|153838057|ref|ZP_01990724.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810] gi|308094348|ref|ZP_05888684.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AN-5034] gi|308095615|ref|ZP_05907096.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus Peru-466] gi|308125639|ref|ZP_05776393.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus K5030] gi|149748524|gb|EDM59383.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810] gi|308086941|gb|EFO36636.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus Peru-466] gi|308092986|gb|EFO42681.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AN-5034] gi|308113048|gb|EFO50588.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus K5030] Length = 174 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 7 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL A I I V+ A +ES +C K DC C LT L + L++ Sbjct: 67 PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 121 >gi|331092088|ref|ZP_08340919.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402289|gb|EGG81860.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium 2_1_46FAA] Length = 132 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TDYGIR+++Y I N+ + ++E I + ++ K+ + L A IV +G Sbjct: 1 MQLSVTTDYGIRIVLYL-IKNNEVTSSAILSEKLDIPKTYVLKVTKKLEAANIVACYQGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GGV L ++I++ DVV ATE + + +C + Sbjct: 60 NGGVNLLPRPEEISLWDVVIATETTTAINKCLDT 93 >gi|229110219|ref|ZP_04239793.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|228673205|gb|EEL28475.1| Transcriptional regulator [Bacillus cereus Rock1-15] Length = 133 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTILFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + EC K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100 >gi|225076501|ref|ZP_03719700.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens NRL30031/H210] gi|224952180|gb|EEG33389.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens NRL30031/H210] Length = 148 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L PA+QI I ++ A E+ +C + K +C C LT L + LN Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCNHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 118 NDYLSGVTLQSIIEQKN 134 >gi|300172524|ref|YP_003771689.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886902|emb|CBL90870.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 168 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ +D P + +++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSHAVEQSLVVLVMLALQKDDLPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 + GG RL RP +IT+LDV +A E Sbjct: 61 KEGGFRLARPISKITLLDVYQAIE 84 >gi|91225151|ref|ZP_01260373.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01] gi|91190094|gb|EAS76365.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01] Length = 168 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL A I I V+ A +ES +C K DC C LT L + L++ Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 115 >gi|56551012|ref|YP_161851.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761404|ref|ZP_04759492.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56542586|gb|AAV88740.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374311|gb|EER63808.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 145 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 10 GIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 G VL AIH + IAE I +L KIL L +AG++ RG+ GG+RL Sbjct: 9 GYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNGGLRLN 68 Query: 68 RPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101 RP + I++L++VKA + + CF S++ CP+ Sbjct: 69 RPPETISLLEIVKAIDGKDWGCGCFLGLPGCSNEHPCPM 107 >gi|93006479|ref|YP_580916.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394157|gb|ABE75432.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter cryohalolentis K5] Length = 170 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ +S IA+ IS +L ++ L K G+V ++ Sbjct: 1 MRLTTRGRYAVTALLDLALQTSQQESAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 RG GG L +P DQI ++ ++ A +ES +C Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC 94 >gi|261364552|ref|ZP_05977435.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria mucosa ATCC 25996] gi|288567120|gb|EFC88680.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria mucosa ATCC 25996] Length = 148 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L P QI I ++ A E+ +C S K +C C LT L + LN Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCYHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRSS 136 D L+ +++ ++ ++S Sbjct: 118 NDYLSSVTLQSIIEQKNS 135 >gi|326386610|ref|ZP_08208232.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208925|gb|EGD59720.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY + V M A R+S Q+AE + + K++ L AG++ +VR Sbjct: 1 MRLSSMADYAV-VAMSAAARRCGHARVSAQQLAEDTGLPVPTVQKLVSKLSAAGLLRSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 G GG+ L RPA I++ D+V+A E +A+C + + DC + C Sbjct: 60 GAGGGLTLARPAAAISLADIVEAVEGPIAMAQCSDNSRHDCTIGQGC 106 >gi|320334616|ref|YP_004171327.1| BadM/Rrf2 family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755905|gb|ADV67662.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus maricopensis DSM 21211] Length = 156 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + +A +S+ +L +I L +AG + +VRG Sbjct: 1 MWISTKAQYGLRALVEIGRRPGEAVPLKDVAANQGLSQHYLEQIASNLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L R D I DVV A E S C C G C + ++ A Sbjct: 61 HGGYKLTRTPDLINTWDVVVAMEGSLAPVACVEEGH-SCEREGVCATQDLWQRVEGAVRG 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL ++ L+R I+ Sbjct: 120 VLGGTTLADLIRENERIE 137 >gi|315918520|ref|ZP_07914760.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059669|ref|ZP_07924154.1| rrf2 family protein [Fusobacterium sp. 3_1_5R] gi|313685345|gb|EFS22180.1| rrf2 family protein [Fusobacterium sp. 3_1_5R] gi|313692395|gb|EFS29230.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563] Length = 148 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R Sbjct: 11 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 70 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116 G GG RL +IT+ V ++ V +C S H+ C CG T + K Sbjct: 71 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCK-DSICGSTCIWSKLDY 129 Query: 117 AFFDVLTQYSIECLVRN 133 A +L+ ++E + N Sbjct: 130 ALTKILSDTTLEDFINN 146 >gi|223928089|gb|ACN23804.1| iron-sulfur cluster regulator [Clostridium sp. enrichment culture clone 7-14] Length = 153 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + +A+ ISE +L I++ LVKA ++ +RG Sbjct: 11 MLISTKGRYALRVMVDLAEHRTEGYIPLKAVAQRQDISEKYLESIIKLLVKAKLLNGLRG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + + T+ +++ TEES C CP + C S+ + Sbjct: 71 KGGGYQLTKAPELYTVGSILRLTEESLAPVSCLEPGAASCPRMAECRTLSLWQGLDRVIS 130 Query: 120 DVLTQYSIECLVRNRSS 136 D L ++ LV++ ++ Sbjct: 131 DYLDNITVADLVKSTAA 147 >gi|167745701|ref|ZP_02417828.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662] gi|317472704|ref|ZP_07932019.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|167655013|gb|EDR99142.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662] gi|316899881|gb|EFV21880.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 165 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A+ + P +S I+E IS +L ++L L KAG+V+++RG Sbjct: 14 MKLSTKGRYGLRAIVDIAVFGEKEPAAVSAISERQDISIRYLEQLLSKLKKAGLVKSIRG 73 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L A+ I++ DV++A E +C Sbjct: 74 AQGGYVLAGNAEDISVGDVLRALEGDLTPVDC 105 >gi|30262741|ref|NP_845118.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47528060|ref|YP_019409.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185589|ref|YP_028841.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|118478131|ref|YP_895282.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165868776|ref|ZP_02213436.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167632402|ref|ZP_02390729.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167637771|ref|ZP_02396050.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170685225|ref|ZP_02876449.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|170704801|ref|ZP_02895267.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|177649735|ref|ZP_02932737.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190565557|ref|ZP_03018477.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196043481|ref|ZP_03110719.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225864745|ref|YP_002750123.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227814419|ref|YP_002814428.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229604122|ref|YP_002867050.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254685333|ref|ZP_05149193.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254722741|ref|ZP_05184529.1| rrf2 family protein [Bacillus anthracis str. A1055] gi|254737789|ref|ZP_05195492.1| rrf2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254743037|ref|ZP_05200722.1| rrf2 family protein [Bacillus anthracis str. Kruger B] gi|254752103|ref|ZP_05204140.1| rrf2 family protein [Bacillus anthracis str. Vollum] gi|254760624|ref|ZP_05212648.1| rrf2 family protein [Bacillus anthracis str. Australia 94] gi|30257373|gb|AAP26604.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47503208|gb|AAT31884.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179516|gb|AAT54892.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|118417356|gb|ABK85775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] gi|164715502|gb|EDR21019.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167514320|gb|EDR89687.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167532700|gb|EDR95336.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170130602|gb|EDS99463.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|170670585|gb|EDT21324.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172084809|gb|EDT69867.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190563584|gb|EDV17549.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196025790|gb|EDX64459.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225787545|gb|ACO27762.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227004844|gb|ACP14587.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229268530|gb|ACQ50167.1| rrf2 family protein [Bacillus anthracis str. A0248] Length = 133 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + I+ LD++ A E + EC K C Sbjct: 59 SGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPGC 100 >gi|255327681|ref|ZP_05368747.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC 25296] gi|255295355|gb|EET74706.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC 25296] Length = 156 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +RVLM A+ +IAE + K + LV G +++ RG Sbjct: 1 MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGV L T+ V++ATE + EC CPL C L +VL KA AF+ Sbjct: 61 RSGGVMLSDAGRSATVGTVLRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 119 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + I L + +F Sbjct: 120 ASVDSVIISELTAGARPVGPVF 141 >gi|153835382|ref|ZP_01988049.1| Rrf2 family protein [Vibrio harveyi HY01] gi|308126079|ref|ZP_05907695.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AQ4037] gi|148868104|gb|EDL67270.1| Rrf2 family protein [Vibrio harveyi HY01] gi|308106690|gb|EFO44230.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AQ4037] Length = 174 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 7 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL A I I V+ A +ES +C K DC C LT L + L++ Sbjct: 67 PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 121 >gi|221319934|ref|ZP_03601228.1| hypothetical protein BsubsJ_14863 [Bacillus subtilis subsp. subtilis str. JH642] Length = 111 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 2 LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L D IT D+++ E + +C+ Sbjct: 62 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKCW 94 >gi|326776682|ref|ZP_08235947.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf. griseus XylebKG-1] gi|326657015|gb|EGE41861.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf. griseus XylebKG-1] Length = 148 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ + P ++A + K++ L G+++ RG Sbjct: 1 MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L I +V+ E V EC CPL +C L LR A AF+ Sbjct: 61 RGGGLTLTPAGRSTPIGPLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 118 Query: 120 DVLTQYSIECLV 131 L ++ LV Sbjct: 119 AALDPITVTDLV 130 >gi|288917460|ref|ZP_06411826.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] gi|288351163|gb|EFC85374.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] Length = 136 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVR 58 M+++ R +Y IR ++ A+ +P+R++ A A IS +L IL L +AG++ R Sbjct: 1 MYISARAEYAIRAMLALAVA--HPDRVAAPALAASEEISLAYLQAILLDLRRAGLLFNRR 58 Query: 59 GRRGGVRLCRPADQITILDVVKAT 82 G GG L RP D IT+ D+++AT Sbjct: 59 GVDGGYSLARPTDSITVGDILRAT 82 >gi|139438966|ref|ZP_01772426.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC 25986] gi|133775677|gb|EBA39497.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC 25986] Length = 142 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +RV++ A H RI +IA ISE +L IL LV+A ++ +R Sbjct: 1 MLVSTKGRYALRVMVDLAEHQ-AAGRIPLKEIAARQGISEKYLENILATLVRANMLSGMR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115 G+ GG L RP +Q T+ ++++ TE S C C C V L K + Sbjct: 60 GKGGGYVLTRPPEQYTVGEILRLTEGSLAPVACLDGDCKGCSRSDECPTLDVWKNLDKLI 119 Query: 116 NAFFDVLT 123 N + D +T Sbjct: 120 NDYLDGVT 127 >gi|119774429|ref|YP_927169.1| Rrf2 family protein [Shewanella amazonensis SB2B] gi|119766929|gb|ABL99499.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis SB2B] Length = 153 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSAQGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL AD I++ VV A +ES C + +C C S+ Sbjct: 61 PGGGYRLGLEADDISVGMVVHAVDESVDATRCQGAG--NCQSGSRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L++ R Sbjct: 119 DFLNGISLAALMQKR 133 >gi|212634528|ref|YP_002311053.1| hypothetical protein swp_1693 [Shewanella piezotolerans WP3] gi|212556012|gb|ACJ28466.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 153 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTDGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A +I++ VV+A +ES C + +C C S+ + Sbjct: 61 PGGGYRLGTDACEISVGMVVRAVDESVDATRCQG--QGNCQSGTRCLTHSLWGDLSSQIS 118 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L+R R Sbjct: 119 DFLNGISLAGLMRKR 133 >gi|319638128|ref|ZP_07992891.1| HTH-type transcriptional regulator [Neisseria mucosa C102] gi|317400401|gb|EFV81059.1| HTH-type transcriptional regulator [Neisseria mucosa C102] Length = 148 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L PA+QI I ++ A E+ +C + K +C C LT L + LN Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 118 NDYLSGVTLQSIIEQKN 134 >gi|182436058|ref|YP_001823777.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464574|dbj|BAG19094.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 156 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ + P ++A + K++ L G+++ RG Sbjct: 9 MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 68 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L I +V+ E V EC CPL +C L LR A AF+ Sbjct: 69 RGGGLTLTPAGRSTPIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 126 Query: 120 DVLTQYSIECLV 131 L ++ LV Sbjct: 127 AALDPITVTDLV 138 >gi|325284485|ref|YP_004257024.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] gi|324316659|gb|ADY27770.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] Length = 156 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 6/110 (5%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87 +A+ + + +L K L+ LV+AG++ G RGG RL RPA++IT +V++A E +SFF Sbjct: 31 MAQHHGLPDDYLAKYLKQLVRAGVLMASTGPRGGYRLARPAERITAWEVIEAIEGGQSFF 90 Query: 88 ----VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + +C C + ++ A + D L+Q ++ LV+ Sbjct: 91 HCQEIRQCGTGAARPAECTEPCAIHQMMHSAFLTWKDQLSQTTVADLVQQ 140 >gi|253581432|ref|ZP_04858657.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836502|gb|EES65037.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 140 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 8/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ +DY I++++Y + + +I+EA +S F KIL+ L K +VE+ RG Sbjct: 5 MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEKMSMKFALKILRRLCKVKLVESFRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLT---SVLR 112 +GG +L + AD I++ V++ + F+ ++ K++ V S + V R Sbjct: 65 IKGGYKLKKSADDISLRSVIEVIQGDLFINTSLKNINSAKKVETDPVNSLLYSIQEDVKR 124 Query: 113 KALNAFFDVLTQYS 126 K N F L S Sbjct: 125 KLSNTSFKDLRDAS 138 >gi|325678776|ref|ZP_08158374.1| putative HTH-type transcriptional regulator IscR [Ruminococcus albus 8] gi|324109280|gb|EGC03498.1| putative HTH-type transcriptional regulator IscR [Ruminococcus albus 8] Length = 144 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++ A H+ D I IAE IS+ +L +I+ L +AG V ++RG Sbjct: 1 MKISTKGRYALRLMTDLAEHHQDGYVPIKVIAERQNISDKYLEQIISILSRAGYVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P + T+ +++ TE S C + + C +C + K A Sbjct: 61 AGGGYMLAYPPENYTVGMILRLTEGSLAPVACLETDENLCERAENCPTLFIWEKLYAAIN 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 DV+ ++ +V +++ +N Sbjct: 121 DVVDNITVADIVARKTNAGDFYN 143 >gi|228959004|ref|ZP_04120705.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229046468|ref|ZP_04192123.1| Transcriptional regulator [Bacillus cereus AH676] gi|229145347|ref|ZP_04273736.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|229190868|ref|ZP_04317859.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|296503312|ref|YP_003665012.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|228592536|gb|EEK50364.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228638186|gb|EEK94627.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228724830|gb|EEL76132.1| Transcriptional regulator [Bacillus cereus AH676] gi|228800665|gb|EEM47581.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296324364|gb|ADH07292.1| RRF2 family protein [Bacillus thuringiensis BMB171] Length = 133 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTILFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + EC K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100 >gi|296132372|ref|YP_003639619.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR] gi|296030950|gb|ADG81718.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR] Length = 134 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+ + TDY R +++ A +Q IA I FL KI+ L+KAGIV++ RG Sbjct: 1 MHINQATDYAFRAVLFLAQQPKGKVVEAQVIARKEVIPMRFLLKIMPSLIKAGIVKSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L + I+ LDVV A E + C Sbjct: 61 VGGGYYLAKDPRDISFLDVVTAIEGPVAINRCL 93 >gi|291297814|ref|YP_003509092.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567034|gb|ADD39999.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 158 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T ++ + + + D P +++AE +L K LQ L +AGIV + G+ Sbjct: 1 MKMTSGVEWALHACVTLSQAAD-PVPAARLAELHGTPPAYLAKQLQSLARAGIVTSTAGQ 59 Query: 61 RGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVG---SCGLTSVLRKA 114 GG L RPA ++T+L+VV+A TE ++ E + P SC + + +A Sbjct: 60 VGGYTLTRPATEVTVLEVVQAVDGTEPAYRCTEIRQRGPLAVPAEKCERSCAIARAMAEA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A+ L++ +I L R Sbjct: 120 QEAWSRALSRITIADLARG 138 >gi|229814919|ref|ZP_04445257.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM 13280] gi|229809406|gb|EEP45170.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM 13280] Length = 146 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H +D + +IA ISE +L IL LV+ G++ +RG Sbjct: 1 MLVSTKGRYALRVMIDLAEHRSDGRTPLRKIAARQGISEKYLENILTTLVRHGLLSGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L R + TI +V++ TE S C C C V R+ + Sbjct: 61 KGGGYCLTREPEDFTIGEVLRLTEGSLCPVACLEHGHDGCDRAEHCRTVRVWRELDSLIE 120 Query: 120 DVLTQYSIECLVRNRS 135 + L ++ LVR+ S Sbjct: 121 NYLNGVTLADLVRDES 136 >gi|294782591|ref|ZP_06747917.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA] gi|294481232|gb|EFG29007.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA] Length = 141 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L +QI + + K ++ V +C A K +CG T + + N Sbjct: 61 GPTGGYKLTLKPNQINLYTIYKILDDEERVIDCNENAEGKAHNCNEEACGETCIWSRLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L++ S+E ++N I Sbjct: 121 AMTKILSETSLEDFIKNGKKI 141 >gi|238022335|ref|ZP_04602761.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147] gi|237866949|gb|EEP67991.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147] Length = 148 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT + + + ++ A+ N N +++ I+E IS +L ++ L +AG+VE+VR Sbjct: 1 MRLTTKGRFAVTAMVDLAM-NAQNNAVKLNAISERQKISLSYLEQLFSKLRRAGLVESVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G GG L +PA QI I ++ A E+ +C S K DC C +T L ++LN Sbjct: 60 GPGGGYVLGKPAGQINIAQIITAAEDRLDATQC--SGKADCHGGAPC-ITHNLWESLN 114 >gi|149375017|ref|ZP_01892790.1| rrf2 family protein [Marinobacter algicola DG893] gi|149360906|gb|EDM49357.1| rrf2 family protein [Marinobacter algicola DG893] Length = 165 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+ IS +L ++ L + +V ++RG Sbjct: 1 MRLTTKGRYAVTAMLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRHKLVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD + I +VV A ES C +K DC C + + Sbjct: 61 PGGGYRLSREADSVFIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118 Query: 120 DVLTQYSIECLVRNR 134 L+ S+ L+R R Sbjct: 119 QFLSDISLGDLMRKR 133 >gi|225018166|ref|ZP_03707358.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum DSM 5476] gi|224949163|gb|EEG30372.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum DSM 5476] Length = 132 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T +DY +R++ + A + + IAE ++ F KIL+ LV AG+V++ +G Sbjct: 1 MYITLESDYAVRIMSFLAKRREKLD-AKTIAENTGVTLRFALKILRKLVAAGVVQSFKGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 +GG + R +IT+L++++ E + + C Sbjct: 60 QGGYLIARDPSEITLLEIIETVEGRYCFSRCLGE 93 >gi|295102114|emb|CBK99659.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii L2-6] Length = 149 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQQLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG RL + T ++++A E S C S +CP+ C + L +N Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSDQCFTLPFWAGLDDVIN 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + D +T +E L ++ ++K+ Sbjct: 121 QYIDSVT---LEQLAQSLPAVKE 140 >gi|117926344|ref|YP_866961.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1] gi|117610100|gb|ABK45555.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp. MC-1] Length = 157 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A H N P +++I+ IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTAMLDLAQHANRGPVTLAEISNRQQISLSYLEQLFAKLRRGGLVGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A+QI++ +++A +E C C C + + + Sbjct: 61 PGGGYQLDRGAEQISVAAIIRAVDEPIHATSCKDKGTEGCRRDTRCITHDLWARLGEHIY 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L S+ L+R+ S++ + A Sbjct: 121 HYLESVSLAQLMRDGSALAMLGEA 144 >gi|257453134|ref|ZP_05618433.1| RRF2 family protein [Fusobacterium sp. 3_1_5R] gi|257467390|ref|ZP_05631701.1| RRF2 family protein [Fusobacterium gonidiaformans ATCC 25563] Length = 138 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116 G GG RL +IT+ V ++ V +C S H+ C CG T + K Sbjct: 61 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCK-DSICGSTCIWSKLDY 119 Query: 117 AFFDVLTQYSIECLVRN 133 A +L+ ++E + N Sbjct: 120 ALTKILSDTTLEDFINN 136 >gi|332702697|ref|ZP_08422785.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio africanus str. Walvis Bay] gi|332552846|gb|EGJ49890.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio africanus str. Walvis Bay] Length = 148 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ YG R+++ A++ N R+S +A +S +L K+++ L KAG V + RG Sbjct: 1 MRLSTRSRYGARMVLDMALYGNAGLVRLSDLAVRLDVSVKYLEKLVRELQKAGYVYSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I++ +VV+ E + C +I C V C + V A A F Sbjct: 61 PTGGHGLARDVAEISVGEVVRLLEGDHALTMCAQEDQI-CRHVDDCIMRKVWTDASEAMF 119 Query: 120 DVLTQYSIECLVRN 133 L + LVR Sbjct: 120 AALDAVTFADLVRE 133 >gi|304437228|ref|ZP_07397188.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369720|gb|EFM23385.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 147 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + + IA ISE +L +++ PL +AG+VE+VRG Sbjct: 1 MKLSTKGRYSVTALYELALRYGKGVIPLHAIAATQGISEHYLEQLMVPLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115 +GG L P ++ITI ++ A E + +C + C G+C + + Sbjct: 61 AQGGYTLALPPEKITIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 120 Query: 116 NAFFDVLTQYSIECLVR 132 ++ VL ++ LV+ Sbjct: 121 DSINSVLNNIALSDLVQ 137 >gi|126668574|ref|ZP_01739528.1| rrf2 family protein [Marinobacter sp. ELB17] gi|126626979|gb|EAZ97622.1| rrf2 family protein [Marinobacter sp. ELB17] Length = 165 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D+ P ++ I+ IS +L ++ L + +V ++RG Sbjct: 1 MKLTTKGRYAVTAMLDLALHGDHGPVTLADISARQEISLSYLEQLFSRLRRRHLVASIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL R A+ I I +VV+A ES C +K DC C L S L + ++ Sbjct: 61 PGGGYRLSRGANAIFISEVVEAVSESLDTTRC--GNKGDCQSGEKCLTHHLWSDLSEQIH 118 Query: 117 AFFDVLT 123 F D ++ Sbjct: 119 QFLDNIS 125 >gi|88856365|ref|ZP_01131024.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1] gi|88814449|gb|EAR24312.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1] Length = 141 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 L + G++E VRGR GGVR+ Q T+ V++ + +A+C + CPL+ CGL Sbjct: 41 LRELGMIEAVRGRSGGVRISDAGRQATVGWVLRQLDTRTDLADCETPDGL-CPLIDGCGL 99 Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNRSS 136 LR A AF+ L I L + RS Sbjct: 100 RGALRLAREAFYAALDDVVISSLRQPRSD 128 >gi|95930242|ref|ZP_01312980.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] gi|95133705|gb|EAT15366.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] Length = 150 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y +R ++ ++ + P I +I+ IS +L ++ L + +V +VRG Sbjct: 1 MRLSTKAQYAVRAMVRLSLEQRETPVSIREISNHENISLTYLEQLFAKLRRGELVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPADQI + ++ + EE+ C +C C +V ++ Sbjct: 61 PGGGYVLARPADQIKVDQIIDSVEETLIPVSCMDEFG-NCACSDQCVTHTVWQELGERIR 119 Query: 120 DVLTQYSIECLVRN 133 L+ SIE L R Sbjct: 120 GFLSSVSIEDLTRE 133 >gi|158336452|ref|YP_001517626.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306693|gb|ABW28310.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina MBIC11017] Length = 147 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ ++ P ++ I++ + +L K+L L +AG+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPNFGPASVNVISQRQSLPAPYLEKLLIELRQAGLVRSVRG 60 Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86 +GG +L RP QI+ IL+ V T E F Sbjct: 61 SKGGYQLARPPVQISLGHILEAVGETVEPF 90 >gi|22297713|ref|NP_680960.1| hypothetical protein tll0169 [Thermosynechococcus elongatus BP-1] gi|22293890|dbj|BAC07722.1| tll0169 [Thermosynechococcus elongatus BP-1] Length = 148 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y I+ L+ ++ +Y P + IAE I +L K+L L +AG+V ++RG Sbjct: 1 MTLTTRGHYSIKALLDLSLLPNYGPASVRAIAERQKIPAPYLEKLLIELRRAGLVRSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG +L RP I++ D++ A ES Sbjct: 61 VYGGYQLARPPATISLRDILTAVGES 86 >gi|189346037|ref|YP_001942566.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM 245] gi|189340184|gb|ACD89587.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola DSM 245] Length = 143 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 + ++++ +YG+ + Y A R+ ++AE+ S+ FL K +Q + KAGI E+V Sbjct: 2 LQVSRKFEYGLHAVAYLATKGS--GRVVTVKEMAESIGFSQEFLSKAMQSMKKAGITESV 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +G +GG RL R ITI D+ A E + C Sbjct: 60 QGVKGGYRLARHPSVITIADIGIAIEGKPHLTRC 93 >gi|325102989|ref|YP_004272643.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324971837|gb|ADY50821.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 144 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGIR L+ H D P IS IAE I + FL +IL L AG + + +G Sbjct: 2 LSKKTKYGIRALIALGEHYDKEPVNISFIAETEKIPKKFLEQILLELRNAGFLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + I ++ V++ T C F +C +CG+ R +A Sbjct: 62 GGYSLLKNPKDINLVQVMRITGGPIAQLPCVSLNFYQRCEECKDEENCGIRDTFRDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 +L++ +I L+ + + Sbjct: 122 TLKILSETTIADLIAKEKGLPR 143 >gi|167629932|ref|YP_001680431.1| transcriptional regulator, rrf2 family [Heliobacterium modesticaldum Ice1] gi|167592672|gb|ABZ84420.1| transcriptional regulator, rrf2 family [Heliobacterium modesticaldum Ice1] Length = 150 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A+ + P + +AE ISE +L +I+ L KAG+V ++RG Sbjct: 1 MKLSTKGQYGVRAMFELAMQYGQGPVSLKLVAERQDISEHYLEQIIAGLRKAGLVNSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R +IT+ D+++ E +C + C C V K ++ Sbjct: 61 AQGGYVLARDPAEITVGDIIRVLEGPVAPVDCVNDDIPERCTRASQCISKRVWAKVRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V+ ++ + ++ +K Sbjct: 121 EQVIDSITLADMCKDAEKMK 140 >gi|300934634|ref|ZP_07149890.1| Rrf2 family transcriptional regulator [Corynebacterium resistens DSM 45100] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M LT D G+R +M I D P I+ +A+A S+ L +++ LV+ +V + Sbjct: 1 MRLTTFADLGLRSMM---ILGDLPEGERLTIADLAKATNASDNHLARVIAKLVEMKLVVS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKAL 115 VRGR GG L A ++ +++ E S V +C + CPL C L L A Sbjct: 58 VRGRNGGAYLSDTARGASVGKILRQIEGSSEVVDCAGTRP--CPLAARDCALRHRLADAQ 115 Query: 116 NAFFDVLTQYSIECLV 131 AFF L +I L+ Sbjct: 116 EAFFATLDDDTIGDLI 131 >gi|332291390|ref|YP_004429999.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter diaphorus 4H-3-7-5] gi|332169476|gb|AEE18731.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter diaphorus 4H-3-7-5] Length = 141 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+++T YGI+ L Y A D +I IAE+ IS+ FL I+ L KAG V + +G+ Sbjct: 2 LSRKTKYGIKALTYIAREQREDALVQIGTIAESENISQKFLESIMLTLKKAGFVSSRKGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALN 116 GG +L R I +++V++ E + C + + DC +C + S++ + + Sbjct: 62 GGGYQLRREPKDIKMVEVMRVLEGPVAMLPCVSLNYYERCADCKDEDACAVHSLMIQIRD 121 Query: 117 AFFDVLTQYSIECLVRNRSS 136 VL + ++ LV SS Sbjct: 122 NTLLVLEKNTLADLVAAASS 141 >gi|328676938|gb|AEB27808.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida Fx1] Length = 136 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSRRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119 Query: 121 VLTQYSIECLVRNR 134 +L++ SI +V N+ Sbjct: 120 LLSKTSIYDIVNNK 133 >gi|197304012|ref|ZP_03169044.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC 29176] gi|197296980|gb|EDY31548.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC 29176] Length = 136 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57 M ++ R Y +RV++ A + PN + + E ISE +L IL+ LV G++ + Sbjct: 1 MIISTRGRYALRVMIDLAGQD--PNTYTPLKEIAARQEISEKYLENILKSLVTGGLIFGL 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG+ GG +L + + TI +++ TE S C + +C C + +K Sbjct: 59 RGKGGGYKLTKKPEDYTISSILRLTEGSLAPVACLEENATECEREAVCPTRPLWKKLDTL 118 Query: 118 FFDVLTQYSIECLV 131 D L S++ L+ Sbjct: 119 IQDYLGSVSLKDLI 132 >gi|260906649|ref|ZP_05914971.1| BadM/Rrf2 family transcriptional regulator [Brevibacterium linens BL2] Length = 152 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 30/145 (20%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T ++DY +R L+ A + + P ++ + I + FL IL L + IV +VRG Sbjct: 1 MRVTTKSDYALRALIEIANVTDGEPISADELGKRQDIPKGFLQAILADLRRVEIVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------------- 106 + GG RL + A T+ DV++A +D PLV G Sbjct: 61 KSGGWRLTKSASATTVADVIRA---------------VDGPLVSIYGQRPEVVEYDDAAE 105 Query: 107 -LTSVLRKALNAFFDVLTQYSIECL 130 L V A A DVL Q +IE L Sbjct: 106 SLQQVWIAARFALRDVLEQVTIEQL 130 >gi|283458758|ref|YP_003363397.1| putative transcriptional regulator [Rothia mucilaginosa DY-18] gi|283134812|dbj|BAI65577.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18] Length = 222 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +RVLM A+ +IAE + K + LV G +++ RG Sbjct: 67 MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 126 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGV L T+ +++ATE + EC CPL C L +VL KA AF+ Sbjct: 127 RSGGVMLSDAGRSATVGTILRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 185 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + I L + +F Sbjct: 186 ASVDSVIISELTAGARPVGPVF 207 >gi|116624954|ref|YP_827110.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228116|gb|ABJ86825.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 141 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH + + +Y ++ + A + P RI+ IA+ I + FL IL L +AG VE+ RG Sbjct: 1 MHTSVKGEYALQAIFDLASQRSGEPIRIADIAQRQKIPQKFLELILASLKQAGFVESRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L RPAD +T+ +V++ E Sbjct: 61 AEGGYLLSRPADSLTVGEVLRYVE 84 >gi|332521686|ref|ZP_08398139.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola 5H-3-7-4] gi|332042775|gb|EGI78975.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola 5H-3-7-4] Length = 135 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L+Y A P +I+ I++A IS+ FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALVYLAKQEVRVPVQIATISKAENISQKFLESILLTLKKKGILGSKKGKL 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + +V++ E + C F DCP C + +++ + ++ Sbjct: 62 GGYYLVKEPETVAMAEVMRVLEGPIAMVPCVSLNFYEPCDDCPDETVCAVHNLMEEVRDS 121 Query: 118 FFDVLTQYSI 127 + ++ Sbjct: 122 SLKIFNNKTL 131 >gi|313894415|ref|ZP_07827980.1| putative HTH-type transcriptional regulator IscR [Veillonella sp. oral taxon 158 str. F0412] gi|313441239|gb|EFR59666.1| putative HTH-type transcriptional regulator IscR [Veillonella sp. oral taxon 158 str. F0412] Length = 138 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A + N I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEYGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 + GG RL + + + +++ A E+S + C CP+ C LT+ L + L + F Sbjct: 61 KYGGYRLVKLPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119 Query: 119 FDVLTQYSIECLVRNR 134 V+ + S++ ++ ++ Sbjct: 120 RHVMERVSLQDVMDHK 135 >gi|253574913|ref|ZP_04852253.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845959|gb|EES73967.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 145 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + YG+ ++M A + + P + IAE +SE +L +++ PL AG+V++VRG Sbjct: 7 LKISTKGRYGLTIMMELAAKYGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + A +IT D+++ E Sbjct: 67 AYGGYILSKEASEITAGDIIRVLE 90 >gi|290476020|ref|YP_003468917.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus bovienii SS-2004] gi|289175350|emb|CBJ82153.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus bovienii SS-2004] Length = 164 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I + +V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGRNAGNIFVAEVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNR 134 L+ S+E LV+N+ Sbjct: 119 SFLSSISLEELVKNQ 133 >gi|297562143|ref|YP_003681117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846591|gb|ADH68611.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 143 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD +R++M A+ ++ ++ +A + + K + L G+VE RG Sbjct: 1 MRLTAFTDVSLRLVMRLAVADEGELLTTRAVAGMLSVPYTHMAKAVARLSDMGLVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + ++ +V+ E + +A C CPL +C L LR+A AF+ Sbjct: 61 RNGGLLLTESGRRASVGSIVRELEGAGELAGC--EDDPPCPLRAACRLRGALREAHEAFY 118 Query: 120 DVLTQYSIECLV 131 L ++E LV Sbjct: 119 TSLDGVTVESLV 130 >gi|163802461|ref|ZP_02196354.1| hypothetical protein 1103602000590_AND4_19427 [Vibrio sp. AND4] gi|159173762|gb|EDP58577.1| hypothetical protein AND4_19427 [Vibrio sp. AND4] Length = 168 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG RL A I I V+ A +ES +C K DC Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESIDATKCQG--KGDC 98 >gi|119493246|ref|ZP_01624086.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp. PCC 8106] gi|119452719|gb|EAW33897.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp. PCC 8106] Length = 147 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ ++ P ++ IA + +L K+L + +AG+VE+VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLQQEFGPTSVNAIAHRQKLPAPYLEKLLIEMRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R +I++ +++A ES E H+ + L ++ + Sbjct: 61 SQGGYQLSRSPAKISLGQILEAVGESI---EPLPRHQPNAELAEDWVTFTLWNRLHQKLK 117 Query: 120 DVLTQYSIECLVRNRSSIK 138 + L S+E L + S + Sbjct: 118 EALYSISLEDLYYDARSWQ 136 >gi|313498421|gb|ADR59787.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 179 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 11/131 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L++ + + +AE + + +L K+ L +AG+V G RGG R Sbjct: 9 EYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAATEGVRGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RPA QI++LD+V A + + +C F G+C + +V+ A Sbjct: 69 LARPAAQISVLDIVNAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIHAVMLGAQK 128 Query: 117 AFFDVLTQYSI 127 + L Q ++ Sbjct: 129 RMEESLAQQTV 139 >gi|313112815|ref|ZP_07798462.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624885|gb|EFQ08193.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 152 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG RL + T ++++A E S C S +CP+ C + L + +N Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMWEQCFTLPFWTGLDEVIN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 QYIDSVT 127 >gi|229070249|ref|ZP_04203500.1| Transcriptional regulator [Bacillus cereus F65185] gi|228712867|gb|EEL64791.1| Transcriptional regulator [Bacillus cereus F65185] Length = 133 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + + + A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMFFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + EC K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100 >gi|16800618|ref|NP_470886.1| hypothetical protein lin1550 [Listeria innocua Clip11262] gi|16414037|emb|CAC96781.1| lin1550 [Listeria innocua Clip11262] Length = 140 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ + Sbjct: 113 DVLDQTTLSDLLKHSTD 129 >gi|134099519|ref|YP_001105180.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008706|ref|ZP_06566679.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912142|emb|CAM02255.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora erythraea NRRL 2338] Length = 160 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ ++ + L+ A +D P S++A + +L K LQ LV+AG++ + G Sbjct: 1 MRMSEGVEWALHSLLALAWLDDGRPVPTSRLAAGNDLPPAYLNKQLQALVRAGLLVSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKA---TEESF 86 RGG L RP ++IT++DVV A EE+F Sbjct: 61 ARGGFSLARPPEKITLMDVVAAIEGPEEAF 90 >gi|189220122|ref|YP_001940762.1| transcriptional regulator YrzC [Methylacidiphilum infernorum V4] gi|189186980|gb|ACD84165.1| Putative transcriptional regulator YrzC [Methylacidiphilum infernorum V4] Length = 154 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 5/149 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTKR+ Y IR L+Y A I +IAE I + FL IL L G + + RG Sbjct: 1 MFLTKRSKYAIRALLYLAKEQQRGTILIQEIAEKEKIPKKFLESILLELKNNGFLSSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 + GG L P ++I I V++ + C + DC +C + ++++ Sbjct: 61 KGGGYALEYPPEKIPIGSVIRLIDGPLAPVRCVSQTAYAPCEDCLDEKTCVIRLLMKETR 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNAG 144 + VL + S++ L++ S +K G Sbjct: 121 DVISTVLDKTSLKELLQKESQLKTEATEG 149 >gi|328956203|ref|YP_004373536.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] gi|328456527|gb|AEB07721.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 1/128 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY R+L + AE + F I L K G +E++RG Sbjct: 1 MDISRKTDYAFRILAMLVGSKGSLLSVRTAAEEMDVPYSFARSIQHELTKVGFIESLRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL IT+ D+++A + V +C K CP SC + A D Sbjct: 61 RGGMRLKIDPASITVNDIIEAMQGPLVVNKCLKDGK-PCPRRESCCYHPIWIGAKALLRD 119 Query: 121 VLTQYSIE 128 L+ ++E Sbjct: 120 YLSSVTLE 127 >gi|320157286|ref|YP_004189665.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O] gi|81844780|sp|Q8DEY6|ISCR_VIBVU RecName: Full=HTH-type transcriptional regulator iscR gi|119371155|sp|Q7MNG3|ISCR_VIBVY RecName: Full=HTH-type transcriptional regulator iscR gi|319932598|gb|ADV87462.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O] Length = 168 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I+I V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + I+ Sbjct: 119 DFLNNITLGELMSDNEVIE 137 >gi|269127656|ref|YP_003301026.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312614|gb|ACY98988.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora curvata DSM 43183] Length = 146 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M LTK TD +R+ M A+ + P + Q+AEA + K++ L G++E Sbjct: 1 MRLTKFTDLALRISMRLAVAD--PAEVYTTKQVAEAVGAPYTHVAKVVSRLQHLGVLEAR 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG+ L +I +++ E VA C S CPL +C L L +A A Sbjct: 59 RGRGGGLVLTERGRDASIGWLMRELEGYGDVAGCEDSPP--CPLRAACRLRGALSRAQEA 116 Query: 118 FFDVLTQYSIECLVRNRSS 136 F+ L ++ LV S+ Sbjct: 117 FYAALDPVTVRELVEAPSA 135 >gi|150018353|ref|YP_001310607.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904818|gb|ABR35651.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 167 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y I L+Y + I +A ISE +L K+ L KAGI++++ G Sbjct: 1 MKFSVGVEYAIHCLLYMVKLEEGKSVGIRDLATFQGISETYLSKVYAKLSKAGIIKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87 +GG L R A++IT D+V+A E ESFF Sbjct: 61 VKGGYALARSAEEITFWDIVEAVEGSESFF 90 >gi|163814282|ref|ZP_02205671.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759] gi|158449917|gb|EDP26912.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759] Length = 144 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ A D P I +A ISE +L +I L G+V++ RG Sbjct: 1 MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSMLNSGGLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT+ V++ TE C + + C C + R+ A Sbjct: 61 PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCDREARCSTIGLWRRLDKAIR 120 Query: 120 DVLTQYSIECLVRNR 134 DV+ +I LV R Sbjct: 121 DVVDTTTIADLVAER 135 >gi|319896708|ref|YP_004134901.1| transcriptional regulator [Haemophilus influenzae F3031] gi|317432210|emb|CBY80562.1| predicted transcriptional regulator [Haemophilus influenzae F3031] Length = 150 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG +L P++QI++ ++ A E+ V +C Sbjct: 61 SGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94 >gi|295093897|emb|CBK82988.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp. ART55/1] Length = 144 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ A D P I +A ISE +L +I L G+V++ RG Sbjct: 1 MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSVLNSGGLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT+ V++ TE C + + C C + R+ A Sbjct: 61 PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCEREARCSTIGLWRRLDKAIR 120 Query: 120 DVLTQYSIECLVRNR 134 DV+ +I LV R Sbjct: 121 DVVDTTTIADLVAER 135 >gi|260430264|ref|ZP_05784238.1| putative transcriptional regulator [Citreicella sp. SE45] gi|260418736|gb|EEX11992.1| putative transcriptional regulator [Citreicella sp. SE45] Length = 126 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 56/100 (56%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + +AE +S L KI+Q L +AG+V+T RG GG L R +I + DVV EE Sbjct: 16 ADLAEEFQLSRNHLIKIIQKLSRAGLVQTRRGGGGGATLARHPKEIRLGDVVLVLEEGQA 75 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 + ECF + DC + G C LT+ LR A AF + L + ++ Sbjct: 76 LVECFQPNGGDCTIDGCCRLTTRLRVAEMAFIENLNRSTV 115 >gi|209694305|ref|YP_002262233.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] gi|226711609|sp|B6EGX4|ISCR_ALISL RecName: Full=HTH-type transcriptional regulator iscR gi|208008256|emb|CAQ78401.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 168 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG RL D+I + V+ A +ES +C Sbjct: 61 PGGGYRLGLKPDEIAVGMVISAVDESVDATKCHG 94 >gi|300724150|ref|YP_003713467.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus nematophila ATCC 19061] gi|81322241|sp|Q8GLE9|ISCR_XENNA RecName: Full=HTH-type transcriptional regulator iscR gi|23345066|gb|AAN17744.1| putative iron-sulfur cluster regulator protein IscR [Xenorhabdus nematophila] gi|297630684|emb|CBJ91349.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus nematophila ATCC 19061] Length = 164 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I + +V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGRDAGRIFVAEVISAVDESVDATRCQG--KEGCQGGDRCLTHALWRDLSERIT 118 Query: 120 DVLTQYSIECLVRNR 134 L S+E LV+N+ Sbjct: 119 SFLGSISLEELVKNQ 133 >gi|323518180|gb|ADX92561.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] Length = 164 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D P +AE +S F+ KI L KAG+V G RGG L R A +I+ LD+V Sbjct: 3 NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIV 62 Query: 80 KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 A E + EC F + D G C + +V+ +A A D L +++ Sbjct: 63 NAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 119 >gi|257066428|ref|YP_003152684.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii DSM 20548] gi|256798308|gb|ACV28963.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii DSM 20548] Length = 133 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S++++ +SE +L ++++ L G++ + RG Sbjct: 1 MKLSTRGRYGLRAMCYLASNKDRGYISVSEMSDKLNLSENYLEQLIRLLKNDGLITSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 +GG ++ R D+I++ +V++ E + +++C + Sbjct: 61 PKGGYKITRDLDEISVGEVLRVLEGNITMSDCVS 94 >gi|307721561|ref|YP_003892701.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas autotrophica DSM 16294] gi|306979654|gb|ADN09689.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas autotrophica DSM 16294] Length = 134 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 5/88 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRG 59 ++ ++ YG+ + A++N N++ QI E ++++ +L +IL L K G V +VRG Sbjct: 4 VSTKSLYGVAAM--HALYNSPRNKLMQIKEIAAVTQISHGYLEQILSTLKKHGFVISVRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFF 87 GG +L A +I +LDVV+A E F Sbjct: 62 ANGGYKLASDASKIIVLDVVEALEGELF 89 >gi|302036962|ref|YP_003797284.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300605026|emb|CBK41359.1| putative HTH-type transcriptional regulator, rrf2 family [Candidatus Nitrospira defluvii] Length = 141 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K+++YG+R L+ C + + +IAE I FL +IL L +AG++ + RG Sbjct: 1 MKFSKKSEYGLRALLELCETYGGRVLQRHEIAERQNIPVEFLEQILLALKRAGLLASRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVG--SCGLTSVLRK 113 RGG L + + IT+ V++ + C + DCP SC L + + Sbjct: 61 VRGGYSLIKSPEDITLGQVIRILDGPLAPISCVSKTAYQKCADCPYAAKPSCPLQQAMGE 120 Query: 114 ALNAFFDVLTQYSI 127 +A ++L Y++ Sbjct: 121 VRDAIANILDHYTL 134 >gi|139439175|ref|ZP_01772627.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC 25986] gi|133775522|gb|EBA39342.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC 25986] Length = 143 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 2/93 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++Y A D ++I+ ++A+ IS+ +L ++++PL+KAG++ +VR Sbjct: 1 MLISSKGRYALRLMIYIAALGDAEDKIALREVADREHISQKYLEQLVRPLMKAGLLRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 G+ GG + + ++ D+++A E S C Sbjct: 61 GKGGGYMMAKDPAEVRAGDILRAVEGSTAPVAC 93 >gi|297193473|ref|ZP_06910871.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718251|gb|EDY62159.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 147 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +R +M A+ P ++AE + + K + L G++E RG Sbjct: 1 MRLTKFTDLALRAVMRLAVLEQGGPLTTREVAEEMNVPYAHMAKAIARLQHLGVLEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + ++ +V+ E V C CPL G+C L LR A AF Sbjct: 61 RGGGLELTVLGRRASVGWLVRELEGEGEVVAC--EGDAPCPLRGACRLRRALRDAQEAFH 118 Query: 120 DVLTQYSIECLV 131 L ++ LV Sbjct: 119 ATLDPLTVADLV 130 >gi|160942312|ref|ZP_02089621.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC BAA-613] gi|158434869|gb|EDP12636.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC BAA-613] Length = 179 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A + +I +A I+ +F+ K+L+ L AG V +++G Sbjct: 26 MQLTMTTDYALRCLLYLAGKEGVSSS-PEIGKAVGINNIFVQKVLRVLRDAGFVSSLKGG 84 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG L + ++I +LD++ E++ + C + Sbjct: 85 TGGYWLAKKPEEIVLLDIILLFEKTMKINRCLEAE 119 >gi|332284501|ref|YP_004416412.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] gi|330428454|gb|AEC19788.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] Length = 164 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 14/111 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 + ++K DYG VL + A P R+ S +A + + + KIL+ L + +V + Sbjct: 2 LRISKIIDYGTLVLTHMA---GSPERMFSASDLASTLGLGQPTVSKILKLLGQHELVTSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGL 107 RG RGG L RPA QI++ D++ A EE F + EC A L G+C + Sbjct: 59 RGARGGYILSRPASQISVADIIDALEEQPFGLTECTA-------LPGACSV 102 >gi|320102385|ref|YP_004177976.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319749667|gb|ADV61427.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida ATCC 43644] Length = 137 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D P + +IA I E +L +IL L AG+V++VRG GG RL RP ++T+ +V++ Sbjct: 24 RDEPIPLREIAAEDGIPERYLVQILLQLKGAGLVQSVRGSTGGYRLARPPHRLTLGEVIR 83 Query: 81 ATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 A S + + PL G L V R A + +L Q ++ LV S Sbjct: 84 AIGGS--------ASPLPQPLGPGGRALAQVWRAIEQAEWSILDQTTLAQLVPPEDS 132 >gi|160935060|ref|ZP_02082446.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753] gi|156866513|gb|EDO59885.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753] Length = 134 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T DY +R++ + A IAE + F KIL+ LV I+ + +G Sbjct: 1 MHMTLEADYAVRIVEFLA-EQGCKTDAHTIAEQTRVPLRFALKILRTLVSQDIIVSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG +L PA++IT+ V++A E + + C Sbjct: 60 KGGYQLAHPAEEITLRQVIEAVEGPYVLNRC 90 >gi|239618077|ref|YP_002941399.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] gi|239506908|gb|ACR80395.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] Length = 159 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57 M T ++ Y +R L A+ + N +++IAE I FL KI L AG V+ Sbjct: 1 MGFTVKSSYALRALYELALAAESGNPKLSLAKIAERDMIPRDFLEKIFAELRDAGFVKAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG L +PA++I + DV+ ++ C + +C + +C + V + N+ Sbjct: 61 RGRYGGYVLAKPANEIYLRDVILKLDKPMNSYVCVREN-TECDIDPNCTVKYVWFRLYNS 119 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 L + ++ L+ +KK Sbjct: 120 MMRELGKMTLADLIEIGEKLKK 141 >gi|315225080|ref|ZP_07866897.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944763|gb|EFS96795.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 145 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AIH+ +RI+ +AEA I FL KILQ L + ++ + +G Sbjct: 2 LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L Q ++ VV+ E+ C K +C C L + ++ + F Sbjct: 62 GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120 Query: 121 VLTQYSIECLVR 132 LT+ SI + Sbjct: 121 ELTENSIASFAQ 132 >gi|37678938|ref|NP_933547.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|326423712|ref|NP_759435.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio vulnificus CMCP6] gi|37197680|dbj|BAC93518.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] gi|319999071|gb|AAO08962.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio vulnificus CMCP6] Length = 183 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 16 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I+I V+ A +ES +C K DC C ++ R + Sbjct: 76 PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 133 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + I+ Sbjct: 134 DFLNNITLGELMSDNEVIE 152 >gi|197121302|ref|YP_002133253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Anaeromyxobacter sp. K] gi|196171151|gb|ACG72124.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. K] Length = 157 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 2/145 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY I +L A + +AE + + K+ + L KAG+V + RGR Sbjct: 2 IRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L RPAD I+I ++V+A E + C + C L +C + A Sbjct: 62 HGGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAI 121 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143 L + +V S+ K +A Sbjct: 122 QGALRGLPLSSIVLQHSNDPKNADA 146 >gi|121594469|ref|YP_986365.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|120606549|gb|ABM42289.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] Length = 179 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 11/131 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L++ + + +AE + + +L K+ L +AG+V G RGG R Sbjct: 9 EYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAATEGVRGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RPA QI++LD+V A + + +C F G+C + +V+ A Sbjct: 69 LARPAAQISVLDIVHAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIHAVMLGAQK 128 Query: 117 AFFDVLTQYSI 127 + L Q ++ Sbjct: 129 RMEESLAQQTV 139 >gi|310827114|ref|YP_003959471.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612] gi|308738848|gb|ADO36508.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612] Length = 134 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 4/130 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R++ ++ + +SQ+++ I + F +KI++ L +AG+V RG Sbjct: 1 MLITRETDYALRLVR--SLADGERRSVSQLSDEEQIPKAFAYKIIKKLERAGLVSIARGS 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKID-CPLVGSCGLTSVLRKALNAF 118 GG L +P I++ D++ A + S ++ C S ++ + C GSC + L Sbjct: 59 EGGCSLNKPTSAISLYDLMCAIDGSCSLSPCMESGYRCEWCEKHGSCCFHNHLMVIQEEL 118 Query: 119 FDVLTQYSIE 128 D L S+E Sbjct: 119 NDRLKASSLE 128 >gi|260753319|ref|YP_003226212.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552682|gb|ACV75628.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 145 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 10 GIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 G VL AIH + IAE I +L KIL L +AG++ RG+ GG+RL Sbjct: 9 GYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNGGLRLN 68 Query: 68 RPADQITILDVVKATEESFFVAECF 92 RP + I++L++VKA + + CF Sbjct: 69 RPPETISLLEIVKAIDGKDWGCGCF 93 >gi|163858175|ref|YP_001632473.1| RF2 family protein [Bordetella petrii DSM 12804] gi|163261903|emb|CAP44205.1| probable RF2 family protein [Bordetella petrii] Length = 162 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%) Query: 13 VLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 L CAI P +AE + + +L K LQ L +AG+VET G GG RL R Sbjct: 10 ALHSCAILAGLPPGRYLSTKALAELHGVPKEYLSKALQALSQAGLVETTLGPSGGYRLAR 69 Query: 69 PADQITILDVVKATEESFFVAECFASHKI----DCPLVG-----SCGLTSVLRKALNAFF 119 P +IT LD+V+A E A FA + I C G C + V+ +A A+ Sbjct: 70 PGSEITFLDIVEAVEGR---ASTFACNNIRVNNPCRPSGHCDSKPCAIARVMWRADEAWR 126 Query: 120 DVLTQYSI 127 + L + ++ Sbjct: 127 NALREVTL 134 >gi|108805159|ref|YP_645096.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766402|gb|ABG05284.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter xylanophilus DSM 9941] Length = 154 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 1 MHLTKRTDYGIRV---LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ RTDY +R L + P + I+E I + F+ IL L +AGIV Sbjct: 1 MQVSARTDYALRAVAELARAGMEGSGPVKGEWISEVQKIPKKFMENILLDLKRAGIVRAQ 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATE 83 RG GG L RP +I++ ++++A E Sbjct: 61 RGASGGYWLARPPGEISLAEIIRAVE 86 >gi|89098510|ref|ZP_01171393.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89086755|gb|EAR65873.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 133 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 8/115 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + T+Y + +++ + + + ++AE +S +L K+L L KAG++E+ G Sbjct: 1 MKYSNATNYALHTMVHLMLEPGEGTVGVQELAEMQHLSPTYLSKVLTKLAKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +GG ++ R +I+ LDV+ A E + +C H+ C + +V+R+A Sbjct: 61 AKGGYKISRKKHEISFLDVIHAIEGETSLFDCSIHHE-------GCLIENVMRQA 108 >gi|154686893|ref|YP_001422054.1| YrzC [Bacillus amyloliquefaciens FZB42] gi|154352744|gb|ABS74823.1| YrzC [Bacillus amyloliquefaciens FZB42] Length = 138 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H D P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGDGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L ++IT D+++ E E + Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEE 97 >gi|217970609|ref|YP_002355843.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thauera sp. MZ1T] gi|217507936|gb|ACK54947.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T] Length = 160 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A D P ++ IAE IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAARQGDGPVTLAGIAERQSISLSYLEQLFGKLRRHKLVNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R D+IT+ D++ A +E +C K +C C +T L LN Sbjct: 61 PGGGYRLARAMDEITVADIIIAVDEPMDATQCGG--KENCHDDHVC-MTHHLWSNLNQRI 117 Query: 119 FDVLTQYSIECLVRNR 134 + L S+E LV+++ Sbjct: 118 YAYLDSVSLEALVKHQ 133 >gi|331005918|ref|ZP_08329266.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989] gi|330420274|gb|EGG94592.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989] Length = 173 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+D P +S+I++ IS +L ++ L KA +V ++RG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHSDKGPVSLSEISKRQEISLSYLEQLFSKLRKADLVASIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R D I I +V A ES C Sbjct: 61 PGGGYQLGRTLDTIYIAQIVDAVNESIDATNC 92 >gi|315282426|ref|ZP_07870843.1| Rrf2 family protein [Listeria marthii FSL S4-120] gi|313613931|gb|EFR87658.1| Rrf2 family protein [Listeria marthii FSL S4-120] Length = 140 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ + Sbjct: 113 DVLDQTTLADLLKHSTD 129 >gi|229060442|ref|ZP_04197805.1| Transcriptional regulator [Bacillus cereus AH603] gi|228718825|gb|EEL70446.1| Transcriptional regulator [Bacillus cereus AH603] Length = 133 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 G +GG L + I+ LD++ A E + EC Sbjct: 59 SGPKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC 92 >gi|16803555|ref|NP_465040.1| hypothetical protein lmo1515 [Listeria monocytogenes EGD-e] gi|224499825|ref|ZP_03668174.1| hypothetical protein LmonF1_09119 [Listeria monocytogenes Finland 1988] gi|224501545|ref|ZP_03669852.1| hypothetical protein LmonFR_03342 [Listeria monocytogenes FSL R2-561] gi|254828251|ref|ZP_05232938.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829726|ref|ZP_05234381.1| hypothetical protein Lmon1_00155 [Listeria monocytogenes 10403S] gi|254898319|ref|ZP_05258243.1| hypothetical protein LmonJ_00850 [Listeria monocytogenes J0161] gi|254912189|ref|ZP_05262201.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936517|ref|ZP_05268214.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255025787|ref|ZP_05297773.1| hypothetical protein LmonocytFSL_04615 [Listeria monocytogenes FSL J2-003] gi|284801905|ref|YP_003413770.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578] gi|284995047|ref|YP_003416815.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923] gi|16410944|emb|CAC99593.1| lmo1515 [Listeria monocytogenes EGD-e] gi|258600639|gb|EEW13964.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609111|gb|EEW21719.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057467|gb|ADB68408.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578] gi|284060514|gb|ADB71453.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923] gi|293590162|gb|EFF98496.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313623689|gb|EFR93841.1| Rrf2 family protein [Listeria innocua FSL J1-023] Length = 140 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ + Sbjct: 113 DVLDQTTLADLLKHSTD 129 >gi|254994481|ref|ZP_05276671.1| hypothetical protein LmonocytoFSL_16972 [Listeria monocytogenes FSL J2-064] Length = 143 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ + Sbjct: 113 DVLDQTTLADLLKHSTD 129 >gi|229488650|ref|ZP_04382516.1| transcriptional regulator [Rhodococcus erythropolis SK121] gi|229324154|gb|EEN89909.1| transcriptional regulator [Rhodococcus erythropolis SK121] Length = 154 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + ++ P +++AE +S+ +L K L+ L AG+V GR GG L Sbjct: 6 GVEWSLHCCVVLSQSEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGRDGGYVL 65 Query: 67 CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120 R ++IT+LDVV+A TE +F E + P +CG+ V+ A A+ Sbjct: 66 TRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQCRSACGIAKVMADAEKAWRA 125 Query: 121 VLTQYSIECLVR--NRSSIKKIFN 142 L+ +I L + +++KI Sbjct: 126 SLSGVTIADLAATLDLPALRKILT 149 >gi|300744304|ref|ZP_07073323.1| Rrf2 family protein [Rothia dentocariosa M567] gi|311112919|ref|YP_003984141.1| transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|300380029|gb|EFJ76593.1| Rrf2 family protein [Rothia dentocariosa M567] gi|310944413|gb|ADP40707.1| transcriptional regulator [Rothia dentocariosa ATCC 17931] Length = 170 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +R++M + + +Q I+E + K + LV G++E+ RG Sbjct: 1 MRLTAFSDVSLRIMMLLSSLQEGEKLSTQRISEGVGTPYNHVAKSVAFLVNQGLLESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGV L + T+ V+++TE + EC +CPL C L +VL +A AF+ Sbjct: 61 RSGGVLLSETGRKATVGQVLRSTEGDIPMIEC-EDENGNCPLDSFCRLRTVLARAREAFY 119 >gi|116695452|ref|YP_841028.1| iron sulfur cluster assembly transcriptional regulator (SufA) [Ralstonia eutropha H16] gi|113529951|emb|CAJ96298.1| iron sulfur cluster assembly transcriptional regulator (SufA) [Ralstonia eutropha H16] Length = 156 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 7/130 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 + L+K TDYG ++ + A + P RI +++A A ++ KIL+ L + ++E++ Sbjct: 2 LRLSKLTDYGTVIMTHLARN---PGRIYSAAEVAAAIGVAVPTASKILKMLARHHLLESL 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RP QI+I V+ A E + EC + + C G C + + + Sbjct: 59 RGANGGYLLARPPGQISIAQVIDAMEGPAGMTECSVAAGL-CAQEGLCAIRANWQSINQV 117 Query: 118 FFDVLTQYSI 127 F L ++ Sbjct: 118 IFSALNGVTL 127 >gi|218885726|ref|YP_002435047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756680|gb|ACL07579.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 180 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +T Y R+L+ A+H + P + +++ ++ F+ +IL+ L + G+ + RG Sbjct: 1 MKLAAKTRYAARILLALAMHGEESPMTTTALSQHTGVTVQFIEQILKTLKRGGLTRSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ++IT+ ++V+ E + C + C SC S +A A Sbjct: 61 ASGGHMLARTPEEITLSEIVRLMEGGIQLTVCCSGDANACARRASCLTRSAWVRASQALE 120 Query: 120 DVLTQYSIECLVRN 133 L + ++ L+ Sbjct: 121 HSLEETTLATLMEG 134 >gi|256392947|ref|YP_003114511.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256359173|gb|ACU72670.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 151 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 20/142 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY +RV++ A H + S + + + F+ IL L +A +V + RG Sbjct: 1 MHISAKADYAVRVMLELAAHGPGVVKASVVIDHQDLPRKFIEAILVELRRADLVRSHRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA I+I VV+A +D PL GL + + Sbjct: 61 DGGYTLARPAAAISIGSVVRA---------------VDGPLAEVRGL-----RPHETEYA 100 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 ++ +C V R++++K+ + Sbjct: 101 GAAEHLADCWVAARAALRKVLD 122 >gi|46907743|ref|YP_014132.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47094363|ref|ZP_00232058.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|217964338|ref|YP_002350016.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|226224116|ref|YP_002758223.1| hypothetical protein Lm4b_01525 [Listeria monocytogenes Clip81459] gi|254852139|ref|ZP_05241487.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|254931450|ref|ZP_05264809.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|290893874|ref|ZP_06556852.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|300764819|ref|ZP_07074809.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017] gi|46881012|gb|AAT04309.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017261|gb|EAL08099.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|217333608|gb|ACK39402.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|225876578|emb|CAS05287.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605442|gb|EEW18050.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|290556591|gb|EFD90127.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|293583001|gb|EFF95033.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|300514495|gb|EFK41552.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017] gi|307571096|emb|CAR84275.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99] gi|313608684|gb|EFR84520.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208] gi|328465553|gb|EGF36782.1| hypothetical protein LM1816_06485 [Listeria monocytogenes 1816] gi|328474876|gb|EGF45676.1| hypothetical protein LM220_11812 [Listeria monocytogenes 220] gi|332311957|gb|EGJ25052.1| HTH-type transcriptional regulator CymR [Listeria monocytogenes str. Scott A] Length = 140 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ + Sbjct: 113 DVLDQTTLADLLKHSTD 129 >gi|325263740|ref|ZP_08130473.1| Rrf2 family protein [Clostridium sp. D5] gi|324030778|gb|EGB92060.1| Rrf2 family protein [Clostridium sp. D5] Length = 146 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A ++ + P + Q A+ IS +L ++ L KAGIV +V+G Sbjct: 1 MKVSTKGRYGLRALVDMAANSQEGPISLIQTAKRQNISLNYLEQVFGVLRKAGIVVSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 GG +L R AD IT+ ++++A E F + + + D Sbjct: 61 AGGGYKLARSADSITVKEILEALEGEFSIIDKNGEEEAD 99 >gi|257439947|ref|ZP_05615702.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] gi|257197554|gb|EEU95838.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] Length = 149 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG RL + T ++++A E S C S +CP+ C + L + +N Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSEQCFTLPFWAGLDEVIN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 QYIDSVT 127 >gi|228939890|ref|ZP_04102467.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972780|ref|ZP_04133379.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979364|ref|ZP_04139700.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228780368|gb|EEM28599.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228786995|gb|EEM34975.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819821|gb|EEM65869.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940538|gb|AEA16434.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 133 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + +C K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPGC 100 >gi|167033277|ref|YP_001668508.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida GB-1] gi|166859765|gb|ABY98172.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida GB-1] Length = 179 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 11/136 (8%) Query: 8 DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI L++ + + + +AE + + +L K+ L +A +V G RGG Sbjct: 9 EYGIHCLLFLVDERGDSRESSVRDLAELQGVPQEYLAKVFTKLARAKLVVATEGVRGGFH 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RP+D+IT+LD+V A + + +C F G+C + +V+ A Sbjct: 69 LARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFDGAAPGWATEGTCAIHAVMLGAQK 128 Query: 117 AFFDVLTQYSIECLVR 132 + L Q +I L R Sbjct: 129 RMEEALAQQTILDLAR 144 >gi|254824426|ref|ZP_05229427.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|293593662|gb|EFG01423.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] Length = 140 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ + Sbjct: 113 DVLDQTTLADLLKHSTD 129 >gi|302335472|ref|YP_003800679.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] gi|301319312|gb|ADK67799.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] Length = 141 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 Y +RV+ A H + + + +++ IS +L +++ + KAG VE++RG+ GG RL R Sbjct: 11 YALRVMGDLATHEGWVS-LGDVSKRQGISRKYLEQVVSRMHKAGYVESLRGKGGGYRLTR 69 Query: 69 PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR---KALNAFFDVLT 123 + T+ ++++A E S C ++ CP SC ++ R + F D T Sbjct: 70 APEDYTLGEILRAAEGSLAPVACLDCTNDEICPQADSCPTVTIWRDLGRVTAGFLDSRT 128 >gi|301065061|ref|ZP_07205404.1| transcriptional regulator, Rrf2 family [delta proteobacterium NaphS2] gi|300440829|gb|EFK05251.1| transcriptional regulator, Rrf2 family [delta proteobacterium NaphS2] Length = 139 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +Y +R ++Y + +R ++AE I FL KI Q L K G++E + Sbjct: 1 MRLTRAGEYAVRCVLYLSKKGKGALVSR-KEVAEQAVIPSHFLAKIAQELAKVGMIEIRQ 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L ++IT+L VV+ F+ +C K C +C + V +A + Sbjct: 60 GAKGGFVLLMDPEEITLLQVVEIVIGEIFLNDCVVRPK-SCDASPNCSVHVVWMRARDQL 118 Query: 119 FDVLTQYSIECLVR 132 D L + L++ Sbjct: 119 RDTLGSVTFAELIK 132 >gi|21911420|gb|AAM80543.1| StaS [Streptomyces toyocaensis] Length = 154 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T RTDY +R + A + P +++ I FLF IL+ L A +V +VRG Sbjct: 1 MRITARTDYAVRAMAELAAEGETPLTAEELSARQDIPVRFLFGILRELRLARLVHSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L A++IT+ V++A + + ++ P + L V R + Sbjct: 61 QGGYLLASAAEEITLAAVIRAVDGPLASVRELSLTGLEYPGPAAV-LPDVWRAVRTSLRQ 119 Query: 121 VLTQYSIECLVRN 133 VL ++ L R Sbjct: 120 VLETTTLADLARG 132 >gi|212702242|ref|ZP_03310370.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098] gi|212674305|gb|EEB34788.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098] Length = 149 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+ A D ++ Q+A+ IS +L +I++ L GI+ VRG Sbjct: 1 MKFSTRTRYGLRFLLRLAAQPDNSLLQLGQVAQEESISPGYLEQIVRALKPLGILRAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +I + DV E C K+ C G C + + Sbjct: 61 SGGGYALSKPPSEINMEDVFLHLEGEISPVSCLGRGKV-CQREGLCSTRAFWHQLDEHVR 119 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ + S Sbjct: 120 DFLRHQTLQNIIESERS 136 >gi|126641679|ref|YP_001084663.1| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978] gi|169633489|ref|YP_001707225.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii SDF] gi|169796093|ref|YP_001713886.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii AYE] gi|169149020|emb|CAM86897.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii AYE] gi|169152281|emb|CAP01191.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii] Length = 147 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +++IA IS +L ++ L + G+V +VRG GG L R AD+IT+L++++A E+ Sbjct: 18 LAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARNADEITVLEIIEAVNETV 77 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 C HK +C C + ++ + D L + ++ L+ +R +++ + Sbjct: 78 DATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLANLI-SRDNVQTV 128 >gi|71278574|ref|YP_267874.1| Rrf2 family protein [Colwellia psychrerythraea 34H] gi|71144314|gb|AAZ24787.1| Rrf2 family protein [Colwellia psychrerythraea 34H] Length = 168 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ IH P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVTIHAVSGPVSLADISERQGISLSYLEQLFSRLRKEGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG RL R + QI + DV+ A ES +C S K +C C LT L + L+ Sbjct: 61 PGGGYRLGRCSAQIAVADVIYAVNESVDATKC--SGKGNCQDGEQC-LTHSLWEGLS 114 >gi|315125526|ref|YP_004067529.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913] gi|315014039|gb|ADT67377.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913] Length = 163 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H N P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHANIGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG L R AD I++ DV+ A +ES C S+ Sbjct: 61 PGGGYLLGREADVISVGDVINAVDESVDATRCQRSN 96 >gi|317403134|gb|EFV83661.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 159 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 14/143 (9%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ ++ + L + ND P S++A A + +L K LQ LV+AGI + G Sbjct: 1 MKMSEGVEWALHCCLTLAWVGNDGPVPTSRLAAAFELPSHYLNKFLQSLVRAGIFTSSAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV----------AECFASHKIDCPLVGSCGLTS 109 +GG +L + + I++LDVV A E + A C A CG+ + Sbjct: 61 AKGGFQLAKAPEAISLLDVVMAIEGDEWAFRCTEIRQRGAGCLAKPN---DFARPCGIAA 117 Query: 110 VLRKALNAFFDVLTQYSIECLVR 132 +++A A+ L +I L++ Sbjct: 118 AMQRAETAWRKELAAQTIADLIK 140 >gi|225026850|ref|ZP_03716042.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353] gi|224955857|gb|EEG37066.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353] Length = 152 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++ A+++ P R+ IA+ +S +L +I+ L KAG + ++R Sbjct: 7 MRISTKGRYALRLMLDIAMNDAEGKPVRVKDIAKRQEVSGKYLEQIVSVLTKAGYLRSIR 66 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L + D+ T+ +++ TE S C C + C + RK A Sbjct: 67 GPQGGYLLTKRPDEYTVGMILRITEGSMEPVPCLEEGSEVCERMEECITIPLWRKLSEAI 126 Query: 119 FDVLTQYSIECLV 131 VL +++ L+ Sbjct: 127 SGVLDHTTLDDLI 139 >gi|219883346|ref|YP_002478507.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] gi|219862191|gb|ACL42531.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] Length = 161 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFV-AECF 92 +S +L K +Q L + G+V +++G GG L RPADQI+ILDVV+A E + FV E Sbjct: 38 VSSSYLAKQMQALSRGGLVRSLQGHAGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIR 97 Query: 93 ASHKIDCPL---VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + P + C + + A A+ D L + +I L SS Sbjct: 98 QRGPLGTPPEKCLTHCPIAIAMMTAETAWRDSLNKITIGDLAHQVSS 144 >gi|219883349|ref|YP_002478510.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] gi|219862194|gb|ACL42534.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] Length = 164 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFV-AECF 92 +S +L K +Q L + G+V +++G GG L RPADQI+ILDVV+A E + FV E Sbjct: 38 VSSSYLAKQMQALSRGGLVRSLQGHAGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIR 97 Query: 93 ASHKIDCPL---VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + P + C + + A A+ D L + +I L SS Sbjct: 98 QRGPLGTPPEKCLTHCPIAIAMMTAETAWRDSLNKITIGDLAHQVSS 144 >gi|116872944|ref|YP_849725.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741822|emb|CAK20946.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 140 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYILNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ + Sbjct: 113 DVLDQTTLADLLKHSTD 129 >gi|325284831|ref|YP_004264293.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] gi|324316546|gb|ADY27658.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] Length = 146 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 +Q+A + +L K+LQ L +AG+++ +RG+ GG RL RP ITILDVV A + Sbjct: 26 AQLAGRTQVPAQYLSKVLQQLHRAGLLQALRGKYGGYRLARPPQDITILDVVNAVDPLQR 85 Query: 88 VAEC 91 + C Sbjct: 86 IRHC 89 >gi|319956225|ref|YP_004167488.1| transcriptional regulator, badm/rrf2 family [Nitratifractor salsuginis DSM 16511] gi|319418629|gb|ADV45739.1| transcriptional regulator, BadM/Rrf2 family [Nitratifractor salsuginis DSM 16511] Length = 134 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ ++Y + L ++ P Q+A CI + FL KIL L K I+E+ RG Sbjct: 1 MLLTRASEYALLSLDKIR-KSEQPIGSEQLARELCIPKSFLAKILHNLAKQEILESHRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 +GG + DQI++ DV+ A E +S V +C + +CP +G C ++ L Sbjct: 60 QGGFTIKAGMDQISVYDVILAAEGKSPAVFDC-TQYAENCPNGSIGGCAISPFLATFQGK 118 Query: 118 FFDVLTQYSIECL 130 D L + +++ L Sbjct: 119 IDDFLNELTLDQL 131 >gi|310659303|ref|YP_003937024.1| badm/rrf2 family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308826081|emb|CBH22119.1| Transcriptional regulator, BadM/Rrf2 family [Clostridium sticklandii] Length = 128 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY +R++ Y A + S IA+ + F+ KIL+ L AGI + RG Sbjct: 1 MKITQESDYALRIVQYLANQEESRVGASIIAKEQDVPLRFVLKILRKLNAAGITKAYRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L + I+ +V++A E ++ C A +K +C Sbjct: 61 SGGYALTKEPGDISYKEVIEAIEGDIYLNRCLA-NKTNC 98 >gi|237740315|ref|ZP_04570796.1| rrf2 family protein [Fusobacterium sp. 2_1_31] gi|262068259|ref|ZP_06027871.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693] gi|229422332|gb|EEO37379.1| rrf2 family protein [Fusobacterium sp. 2_1_31] gi|291377997|gb|EFE85515.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693] Length = 141 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L QI + + K ++ V +C A K +CG T + + N Sbjct: 61 GPTGGYKLTLKPSQINLYTIYKILDDEERVIDCNENAEGKAHNCNEEACGETCIWSRLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L++ S+E ++N I Sbjct: 121 AMTKILSETSLEDFIKNGKKI 141 >gi|169824321|ref|YP_001691932.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|303234034|ref|ZP_07320683.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4] gi|167831126|dbj|BAG08042.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302494959|gb|EFL54716.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4] Length = 135 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCP 100 +GG L + +I++ ++++ EE F V EC S + CP Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGLCSREDTCP 106 >gi|94985327|ref|YP_604691.1| BadM/Rrf2 family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555608|gb|ABF45522.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus geothermalis DSM 11300] Length = 148 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ RT + +L + D + +A + + + + ++ L AG+VET RG+ Sbjct: 11 LSTRTAMAVHILTLVGANPDVAHSSEWLAGSLGVHPVMVRQVTSRLRAAGLVETRRGK-A 69 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 G+RL RPA +T+LDV +A E+ + A CP VGS G+ +VL Sbjct: 70 GLRLTRPASAMTLLDVYRAVEDGDALLALHARPNPSCP-VGS-GIQAVL 116 >gi|296116552|ref|ZP_06835162.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976764|gb|EFG83532.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 152 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY + L+ + ++ + I E + K+L+ L GIV + RG Sbjct: 2 LKLSKLTDYAVVALVRLGQKEEVTTS-PVLSRSTGIPEPTIAKVLKVLAAQGIVISQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP QI++ V++A + + C +C CGL A D Sbjct: 61 RGGYRLARPLAQISVAAVIQAIDGPISLTTCVDGG--ECDARSKCGLVGQWDAVNGAILD 118 Query: 121 VLTQYSIE 128 L+ S+ Sbjct: 119 ALSSISLS 126 >gi|302380671|ref|ZP_07269136.1| transcriptional regulator, Rrf2 family [Finegoldia magna ACS-171-V-Col3] gi|302311614|gb|EFK93630.1| transcriptional regulator, Rrf2 family [Finegoldia magna ACS-171-V-Col3] Length = 135 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCP 100 +GG L + +I++ ++++ EE F V EC S + CP Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGLCSREDTCP 106 >gi|327540342|gb|EGF26928.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47] Length = 139 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+K +Y +R + P +AE + +L ++LQ L AG+V + G G Sbjct: 2 LSKTAEYALRAIACMGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101 G LC P D +TILDVV + +C SH CPL Sbjct: 62 GYELCVPTDTLTILDVVNTVAPVERIRKCPLGLKSHTDLCPL 103 >gi|260893739|ref|YP_003239836.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] gi|260865880|gb|ACX52986.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] Length = 137 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 6/136 (4%) Query: 1 MHLTKR-TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +R T+Y IR L++ A +IAEA I FL KILQ L +AG+V + RG Sbjct: 1 MELIRRNTEYAIRALVHLAACKGEVVSAKEIAEAQDIPIEFLQKILQRLGRAGLVVSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS---VLRKALN 116 GG L R +I +L+V+ + V +CF + C +C L VL + + Sbjct: 61 AAGGFSLARKPSEINLLEVITVMQGRPAVNKCFLGREA-CERAPTCRLKYNWLVLEQKIG 119 Query: 117 AFF-DVLTQYSIECLV 131 F DV Q ++ L+ Sbjct: 120 EFLADVTLQDLVDQLL 135 >gi|289434795|ref|YP_003464667.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171039|emb|CBH27581.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633162|gb|EFS00046.1| Rrf2 family protein [Listeria seeligeri FSL N1-067] gi|313637744|gb|EFS03103.1| Rrf2 family protein [Listeria seeligeri FSL S4-171] Length = 140 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A + P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSSIK 138 DVL Q ++ L+++ S + Sbjct: 113 DVLDQTTLSDLLKHNSDTE 131 >gi|239904872|ref|YP_002951610.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239794735|dbj|BAH73724.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 150 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 4/100 (4%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 +IA+ I + FL IL L + G V + RG+ GG L RPA ++T+ V++ + Sbjct: 29 GEIADRQAIPKRFLEVILNQLRQGGFVASQRGKEGGFYLARPASEVTVGAVIRFMDGPIS 88 Query: 88 VAECFASHKI-DCPLVGSC---GLTSVLRKALNAFFDVLT 123 +C DCPL G C GL R AL +D + Sbjct: 89 PVDCHRERPGHDCPLQGGCVFRGLWDEARDALERVYDTRS 128 >gi|78358758|ref|YP_390207.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221163|gb|ABB40512.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 164 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + YG R+L+ A+H + P + +AE +S+ +L KI + L +AG ++ RG Sbjct: 1 MRLLTNSRYGTRMLLDVAVHGRNGPVLMRDVAERLGVSQKYLEKIARQLKEAGFLKAQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R T+ DVV+ E + C + C C + ++A A F Sbjct: 61 PNGGHTLARDVTTFTVGDVVRLLEGGTDIVGC-GRDEEGCTHAPGCLTRMLWKEAGIAMF 119 Query: 120 DVLTQYSIECLV 131 + L +++ LV Sbjct: 120 ERLDRFTFAELV 131 >gi|259907700|ref|YP_002648056.1| DNA-binding transcriptional regulator IscR [Erwinia pyrifoliae Ep1/96] gi|224963322|emb|CAX54807.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283477554|emb|CAY73470.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM 12163] gi|310764792|gb|ADP09742.1| DNA-binding transcriptional regulator IscR [Erwinia sp. Ejp617] Length = 165 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + AD I + V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117 Query: 119 FDVLTQYSIECLVRNR 134 D L ++ LV N+ Sbjct: 118 SDFLNNITLAELVNNQ 133 >gi|148825338|ref|YP_001290091.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE] gi|260582529|ref|ZP_05850319.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae NT127] gi|148715498|gb|ABQ97708.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE] gi|260094340|gb|EEW78238.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae NT127] Length = 150 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG +L P++QI++ ++ A E+ V +C Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94 >gi|188533165|ref|YP_001906962.1| DNA-binding transcriptional regulator IscR [Erwinia tasmaniensis Et1/99] gi|226711618|sp|B2VI31|ISCR_ERWT9 RecName: Full=HTH-type transcriptional regulator iscR gi|188028207|emb|CAO96065.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 165 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + AD I + V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117 Query: 119 FDVLTQYSIECLVRNR 134 D L ++ LV N+ Sbjct: 118 SDFLNNITLAELVNNQ 133 >gi|15640766|ref|NP_230396.1| hypothetical protein VC0747 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591450|ref|ZP_01678726.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121729724|ref|ZP_01682165.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147673230|ref|YP_001216232.1| hypothetical protein VC0395_A0276 [Vibrio cholerae O395] gi|153216250|ref|ZP_01950350.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153800571|ref|ZP_01955157.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153817260|ref|ZP_01969927.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822734|ref|ZP_01975401.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153824617|ref|ZP_01977284.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153829399|ref|ZP_01982066.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080926|ref|YP_002809477.1| hypothetical protein VCM66_0705 [Vibrio cholerae M66-2] gi|254225012|ref|ZP_04918626.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254285465|ref|ZP_04960429.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254847884|ref|ZP_05237234.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744554|ref|ZP_05418505.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101] gi|262161312|ref|ZP_06030423.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1] gi|262168805|ref|ZP_06036500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27] gi|262190470|ref|ZP_06048721.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93] gi|262402868|ref|ZP_06079429.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586] gi|297581146|ref|ZP_06943070.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499120|ref|ZP_07008927.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655192|gb|AAF93912.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546701|gb|EAX56880.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121628541|gb|EAX61024.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114395|gb|EAY33215.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124123860|gb|EAY42603.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125622399|gb|EAZ50719.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126512176|gb|EAZ74770.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519765|gb|EAZ76988.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146315113|gb|ABQ19652.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148875119|gb|EDL73254.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149741835|gb|EDM55864.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150424327|gb|EDN16264.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008814|gb|ACP05026.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012571|gb|ACP08781.1| conserved hypothetical protein [Vibrio cholerae O395] gi|254843589|gb|EET22003.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737585|gb|EET92979.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101] gi|262022923|gb|EEY41629.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27] gi|262029062|gb|EEY47715.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1] gi|262033642|gb|EEY52131.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93] gi|262351650|gb|EEZ00783.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586] gi|297534462|gb|EFH73299.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297543453|gb|EFH79503.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 188 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 16 MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL + I+I V+ A +ES +C + K DC C LT L + L++ Sbjct: 76 PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 130 >gi|222823943|ref|YP_002575517.1| BadM/Rrf2 family transcriptional regulator [Campylobacter lari RM2100] gi|222539165|gb|ACM64266.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter lari RM2100] Length = 134 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L++ A + P + ++ I + FL KILQ L K ++++ +G Sbjct: 1 MLFTKASEYALLSLIHIA-KSKEPQDVDTMSNVLDIPKSFLAKILQALAKDALLKSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 +GG L + + T+ +++ + E +S V EC S+ I CP +C + +L K N Sbjct: 60 KGGFVLIKQPSEYTLKEIINSVEKKSINVFEC--SNGI-CPSQKEDNCKIMPILVKLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 D L ++E +++N Sbjct: 117 IDDFLVSITLEDIIQNN 133 >gi|70726295|ref|YP_253209.1| hypothetical protein SH1294 [Staphylococcus haemolyticus JCSC1435] gi|68447019|dbj|BAE04603.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 140 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENSLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PAD+I D+++ E + E S Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPITIVESIESE 96 >gi|319782786|ref|YP_004142262.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168674|gb|ADV12212.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 167 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%) Query: 10 GIRVLMYCA-----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++CA + + + +AEA +S +L K L L A ++E+V G GG Sbjct: 6 GVEAAIHCAATLASVEGNSTMPGAALAEAFGLSPSYLLKHLNMLSAARVLESVPGPAGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAECF-----ASHKIDC-PLVGSCGLTSVLRKALNAF 118 RL RPA++IT+LD+V A E C K+D V CG+ + + KA A+ Sbjct: 66 RLARPAERITLLDIVLAVEGREPAFRCGEIRQRGPVKLDASAYVKPCGINAAMLKAERAY 125 Query: 119 FDVLTQYSIECLV 131 L + + +V Sbjct: 126 RAALAETKLSDIV 138 >gi|312897950|ref|ZP_07757363.1| Rrf2 family protein [Megasphaera micronuciformis F0359] gi|310620984|gb|EFQ04531.1| Rrf2 family protein [Megasphaera micronuciformis F0359] Length = 173 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 9/123 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TDY R+++Y A + +I+ +AE I E FL KI++ L A I+++ R Sbjct: 32 MRLNQATDYAFRMVLYLATCPE-GTKITGAALAEKQNIPERFLLKIMRSLTAADIMKSYR 90 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R IT+ DV+ A E + C A D G G+ S+ NAF Sbjct: 91 GVEGGFALQRDPKDITLYDVIDAVEGQTQLQRCLAD--TDACTRGCGGMCSL----YNAF 144 Query: 119 FDV 121 ++ Sbjct: 145 EEI 147 >gi|292489066|ref|YP_003531953.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|292900194|ref|YP_003539563.1| transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291200042|emb|CBJ47167.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291554500|emb|CBA22046.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|312173222|emb|CBX81477.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC BAA-2158] Length = 165 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + AD I + V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117 Query: 119 FDVLTQYSIECLVRNR 134 D L ++ LV N+ Sbjct: 118 SDFLNNITLAELVNNQ 133 >gi|163940519|ref|YP_001645403.1| BadM/Rrf2 family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229012026|ref|ZP_04169205.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|163862716|gb|ABY43775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus weihenstephanensis KBAB4] gi|228749114|gb|EEL98960.1| Transcriptional regulator [Bacillus mycoides DSM 2048] Length = 133 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--EATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 G +GG L + I+ LD++ A E + EC Sbjct: 59 SGPKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC 92 >gi|297153681|gb|ADI03393.1| hypothetical protein SBI_00272 [Streptomyces bingchenggensis BCW-1] Length = 148 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT+ TD +R +M A+ + ++ IA++ + + K + L G+VE RG Sbjct: 3 VRLTRYTDLALRAVMRLAVMDGEELLTTRLIADSMNVPYTHMAKTIAHLQHLGVVEARRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + ++++ E C + CPL G+C L LR A AF+ Sbjct: 63 RNGGLMLTDAGRNTRVGELIRVLEGDREAVVC--EGEAPCPLAGACRLRRALRDAQEAFY 120 Query: 120 DVLTQYSIECLV 131 L Q ++ LV Sbjct: 121 ASLDQVTVADLV 132 >gi|119371154|sp|Q9KTY3|ISCR_VIBCH RecName: Full=HTH-type transcriptional regulator iscR Length = 173 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG RL + I+I V+ A +ES +C + K DC C LT L + L++ Sbjct: 61 PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 115 >gi|257093603|ref|YP_003167244.1| BadM/Rrf2 family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046127|gb|ACV35315.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 164 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ ++ P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRCSEGPVTLAGISERQKISLSYLEQLFGKLRRYGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L RP Q+T+ D+++A +E +C + +C C +T L LN Sbjct: 61 PGGGYCLARPTSQMTVTDIIRAVDEPLDATQCGG--RENCHDDERC-MTHELWTTLNEKM 117 Query: 119 FDVLTQYSIECLV 131 FD L+ ++ LV Sbjct: 118 FDYLSSVTLNELV 130 >gi|325290921|ref|YP_004267102.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] gi|324966322|gb|ADY57101.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] Length = 149 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A++ + P I+ IA+ ISE +L ++L + + G+++++RG Sbjct: 1 MKISTKGRYGLRAILDVALNEKEGPVTINSIAKRQEISERYLEQLLIVMKQRGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L + +I++ DV++A E +C + C C V + Sbjct: 61 FQGGYLLNKEPREISVGDVIRALEGPIAPVDCVNDDDTEQCSRSNYCVTKIVWEDLKQSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 VL YS+ L+ ++ I Sbjct: 121 TKVLDSYSLRDLMEEEEKVRSI 142 >gi|57167906|ref|ZP_00367046.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter coli RM2228] gi|305432068|ref|ZP_07401235.1| rrf2 family protein [Campylobacter coli JV20] gi|57021028|gb|EAL57692.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter coli RM2228] gi|304445152|gb|EFM37798.1| rrf2 family protein [Campylobacter coli JV20] Length = 136 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 10/129 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+Y A H + P + +A I + FL KILQ L K ++++ +G Sbjct: 1 MLFTKASEYALLSLIYIA-HKENPQDVDSLALELNIPKSFLAKILQTLAKDNLLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSV---LRKA 114 +GG L + Q +I ++V + E + V EC CP +C L + L+ Sbjct: 60 KGGFALIKEPSQYSIKEIVNSAEKKEVSVFECSGGV---CPNNKEENCTLMPMLVNLQNK 116 Query: 115 LNAFFDVLT 123 ++ F D LT Sbjct: 117 VDEFLDSLT 125 >gi|153814361|ref|ZP_01967029.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756] gi|317500076|ref|ZP_07958311.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087700|ref|ZP_08336626.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848757|gb|EDK25675.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756] gi|316898561|gb|EFV20597.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409681|gb|EGG89117.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium 3_1_46FAA] Length = 143 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A + + + +I A IS +L +IL L K G++E V G Sbjct: 1 MLISTKGRYALRVMIDLAQNKESGHVAMKIVAARQGISLKYLERILPVLTKNGLIEGVHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 + GG RLCR + + ++++ TE + C + C C G+ + K +N Sbjct: 61 KGGGYRLCREPKEYKVGEILRLTEGNLAPVSCLECNAPVCERKDQCHTIGMWTDFHKMIN 120 Query: 117 AFFDVLT 123 +FD +T Sbjct: 121 DYFDGIT 127 >gi|225570685|ref|ZP_03779708.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM 15053] gi|225160512|gb|EEG73131.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM 15053] Length = 181 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A + + P IS IA ISE +L +++ + KAG+V+++RG Sbjct: 30 MKLSTKGRYGLRAIIDLARYAETEPVSISSIAARQEISERYLEQLVGLMKKAGLVKSIRG 89 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG L R I++ DV++A E S +C A Sbjct: 90 AGGGYVLARDMKDISVGDVLRALEGSLEPVKCAA 123 >gi|220909499|ref|YP_002484810.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866110|gb|ACL46449.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7425] Length = 145 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ +Y P + IA+ + +L K+L + +AG+V ++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPNYGPTSVQAIAQRQDLPAPYLEKLLIAMRRAGLVHSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 +GG +L R QI++ +++A ES Sbjct: 61 AQGGYQLARSPAQISLAQILEAVGES 86 >gi|260892331|ref|YP_003238428.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] gi|260864472|gb|ACX51578.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] Length = 154 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R LM A H P + +A ISE +L ++ L AG++ ++RG Sbjct: 1 MKLSTRIRYGVRALMDIAEHGTAGPVSLKDVARRQGISEQYLEQLALLLKGAGLIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I + ++V+ + +C ++ C C + V R+A AF Sbjct: 61 AHGGFVLSRQATEIRLSEIVEILGGPIKLVDCLYDQEV-CTRADCCAVRDVWREANEAFR 119 Query: 120 DVLTQYSIECLV-RNRSSI 137 +VL ++ LV R R + Sbjct: 120 NVLAAVTLADLVERQRKKL 138 >gi|296447739|ref|ZP_06889655.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296254771|gb|EFH01882.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 147 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 5/125 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ + + A + +S+IA I + FL IL L G V + G+ Sbjct: 2 LTKKGKYGLKAMAHLARFAPGHCVPVSEIATTQHIPKKFLDAILCELRNCGYVASKMGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPAD+I I D+++A + C + DC V C + V+++A A Sbjct: 62 GGYTLARPADEIMIGDIIRALDGPLAPLPCASRSSYRPCDDCSDVARCAVRMVMQEAQQA 121 Query: 118 FFDVL 122 VL Sbjct: 122 LSKVL 126 >gi|220916006|ref|YP_002491310.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953860|gb|ACL64244.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] Length = 157 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY I +L A + +AE + + K+ + L KAG+V + RGR Sbjct: 2 IRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L RPAD I+I ++V+A E + C + C L +C + A Sbjct: 62 HGGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAI 121 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 L + +V S+ K Sbjct: 122 QGALRGLPLSSIVLQHSNDPK 142 >gi|302387033|ref|YP_003822855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197661|gb|ADL05232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 143 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y IR+++ A HN+ + IA+ ISE +L I+ L K ++ ++RG Sbjct: 1 MKISTRGRYAIRLMIDLAEHNNGEYITLMDIAKRQEISEKYLEAIVSILSKNNLLVSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116 + GG +L + + TI +++ TE S C +C P + L L K +N Sbjct: 61 KGGGYKLAKDPESYTIGSILRLTEGSLAPVACLDGENNNCSRSPECQTIDLWEGLNKLIN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 EYLDGVT 127 >gi|75763854|ref|ZP_00743502.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897792|ref|YP_002446203.1| rrf2 family protein [Bacillus cereus G9842] gi|228901306|ref|ZP_04065501.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228965709|ref|ZP_04126789.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|74488661|gb|EAO52229.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543991|gb|ACK96385.1| rrf2 family protein [Bacillus cereus G9842] gi|228793968|gb|EEM41491.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858335|gb|EEN02800.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 133 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + Q+AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVYQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + + I+ LD++ A E + +C K C Sbjct: 59 SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPGC 100 >gi|268679988|ref|YP_003304419.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] gi|268618019|gb|ACZ12384.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] Length = 135 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+ A N P + ++ +S+ FL KILQ L K I+ + +G Sbjct: 1 MLLTKASEYALLSLIIIAQKN-TPQDVDTLSTQLGLSKSFLAKILQSLAKEEILSSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCP--LVGSCGLTSVLRK---A 114 GG L + ++IT+ VV+ A ++ V EC S + CP +C + VL K Sbjct: 60 HGGFMLAKKPEEITLKMVVECAEKKQTVVFECSPSTQ-KCPGGKGDNCRVWPVLNKLQSK 118 Query: 115 LNAFFDVLTQYSI 127 ++ F D +T + I Sbjct: 119 IDLFLDTMTLHDI 131 >gi|291533964|emb|CBL07077.1| rrf2 family protein (putative transcriptional regulator) [Megamonas hypermegale ART12/1] Length = 135 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR+++ A + I+ I + ++ KI + LV A ++E G Sbjct: 1 MQLNITTDYAIRIILALANRDGEVVSSKDISMTMKIPQKYVLKITRSLVAAELIERRSGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119 GG L + ++I++L++VK E + +V C V +C + + N Sbjct: 61 YGGFLLAKKPEEISLLEIVKVMEPTMYVNRCLEEDNYCSRDAVDNCSIRKIYTNFQNIIE 120 Query: 120 DVLTQYSIECLVRNR 134 + ++ +I+ L+ N+ Sbjct: 121 EKFSEITIKTLIDNK 135 >gi|238922731|ref|YP_002936244.1| hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656] gi|238874403|gb|ACR74110.1| Hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656] gi|291526518|emb|CBK92105.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale DSM 17629] gi|291527007|emb|CBK92593.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale M104/1] Length = 144 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++M A +N P + +A+ IS+ +L +I+ L KAG V +VRG Sbjct: 1 MKISTKGRYALRLMMDLAENNTGSPISLKDVAKRQDISDKYLEQIISILNKAGYVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L T+ +++ TE S C +I C C + V +K +A Sbjct: 61 AQGGYMLKMEPQNYTVGMILRQTEGSLAPVACIEDDEIVCDRQQQCVTSIVYKKINDAIS 120 Query: 120 DVLTQYSIECLV 131 V+ +++ LV Sbjct: 121 GVVDNITLQDLV 132 >gi|227356227|ref|ZP_03840616.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163691|gb|EEI48607.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 164 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A QI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGREAGQIFVAQVISAVDESIDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRN 133 L+ S+E LV N Sbjct: 120 SFLSSISLEELVNN 133 >gi|238018522|ref|ZP_04598948.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748] gi|269798637|ref|YP_003312537.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Veillonella parvula DSM 2008] gi|313894420|ref|ZP_07827985.1| putative HTH-type transcriptional regulator CymR [Veillonella sp. oral taxon 158 str. F0412] gi|237864993|gb|EEP66283.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748] gi|269095266|gb|ACZ25257.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula DSM 2008] gi|313441244|gb|EFR59671.1| putative HTH-type transcriptional regulator CymR [Veillonella sp. oral taxon 158 str. F0412] Length = 149 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ A D P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88 + GG RL + + TI++++ ATEES + Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAI 89 >gi|260467181|ref|ZP_05813358.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259029034|gb|EEW30333.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 149 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ A + + IA I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLARMPAGQLAFVGDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL RPAD+I I VV+ + C + + DC +C + ++ + A Sbjct: 62 GGYRLARPADEIEIGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120 Query: 118 FFDVLTQYSI 127 +VL Q S+ Sbjct: 121 IAEVLDQRSL 130 >gi|313672403|ref|YP_004050514.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939159|gb|ADR18351.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 136 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T ++ Y I L+Y + N P S+I+ + I + FL L L GI+++ +G Sbjct: 1 MQTTAQSIYAIYALVYISYRNK-PVNPSEISNSSSIPKRFLEITLNKLKHHGILKSKKGP 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L +P ++I++ D++ ATE + + +C Sbjct: 60 NGGFILSKPPEKISLYDILSATESNLSLFDC 90 >gi|300114135|ref|YP_003760710.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540072|gb|ADJ28389.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 166 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+ IS +L ++ L K G+V + RG Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL R A +I+I+DV+ A +E+ C Sbjct: 61 PGGGYRLSREAGKISIIDVITAVDENMDATRC 92 >gi|326693155|ref|ZP_08230160.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 165 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 16/149 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ + D+ P + +++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSSAVEQSLVVLVMLELQKDHAPVKSYLLSDRLQVSESYLKKTMRKLVVAGIVDAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE-------ESFFVAECFASHKIDCPL-----VGSCGL 107 + GG +L RP IT+LDV +A E + F + K D P+ V + + Sbjct: 61 KEGGFKLARPIANITLLDVYQAIEGDGSFIHSTQLADRIFLNQKSDKPVEDVQEVLNVTI 120 Query: 108 TSVL---RKALNAFFDVLTQYSIECLVRN 133 T VL +A F L Y+I L+++ Sbjct: 121 TDVLTIFSEAEQDFKKRLKSYTIANLLQH 149 >gi|282855787|ref|ZP_06265093.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] gi|282586419|gb|EFB91681.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] Length = 142 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y +RVL+ A H DY P R IAE ISE +L IL+ LV+ ++ + Sbjct: 1 MLVSTKGRYALRVLIDLAEHQSGDYVPLR--AIAERQQISEKYLEAILKSLVRDKVLAGM 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG+ GG +L + +T+ +++ TE S C A C G C + R+ + Sbjct: 59 RGKGGGYKLAVAPEALTVGRILRLTEPSLATVSCLAGRGEKCGRRGECRTLPMWRELDSM 118 Query: 118 FFDVLTQYSIECLVRNRSS 136 L + L++ S Sbjct: 119 ILAYLDGRKLADLIKKDGS 137 >gi|223044133|ref|ZP_03614172.1| Rrf2 family protein [Staphylococcus capitis SK14] gi|314933791|ref|ZP_07841156.1| Rrf2 family protein [Staphylococcus caprae C87] gi|222442527|gb|EEE48633.1| Rrf2 family protein [Staphylococcus capitis SK14] gi|313653941|gb|EFS17698.1| Rrf2 family protein [Staphylococcus caprae C87] Length = 140 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PAD+IT D+++ E E S Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESE 96 >gi|240949678|ref|ZP_04754013.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] gi|240295936|gb|EER46612.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] Length = 150 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ AIH + P ++ IA+ IS +L ++ L + GIV +VRG Sbjct: 1 MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + I++ ++ A E+ V +C S +C C LT L + L Sbjct: 61 PGGGYKLEKSPKDISVGMIIAAVNENVDVTKCKGS--GNCRKDSKC-LTHTLWERLEEQI 117 Query: 120 DV-LTQYSIECLVRNRSS 136 V L S+E LV+ S Sbjct: 118 GVFLNTVSLEDLVKENSD 135 >gi|163784477|ref|ZP_02179349.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1] gi|159880255|gb|EDP73887.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1] Length = 143 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 10 GIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 IR ++Y A + I +IAE +S FL KIL LVK +E+ RG GGV+L Sbjct: 9 AIRAMIYIAKKQKKSDSFISIKEIAENLNLSFYFLSKILHKLVKDRFLESYRGPNGGVKL 68 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 RP + I++ D++ + + + +C K +C C + Sbjct: 69 ARPMENISLYDIILSIDGNNVFTQCILGFK-ECSDTKPCAV 108 >gi|296106185|ref|YP_003617885.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy] gi|295648086|gb|ADG23933.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy] Length = 139 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 ++Y A H+ IA ++ + KIL+ L AG++ +VRG GG RL RPA +I Sbjct: 1 MVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVSGGYRLQRPAAEI 60 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 ++ ++ A EE EC + DC L G C + R +A L S+E L + Sbjct: 61 SVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETALDSVSLEALAK 118 >gi|256391950|ref|YP_003113514.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256358176|gb|ACU71673.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 145 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 47/87 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ RTDY +RVL+ A + P IAE+ I FL +++ L AG+V + RG Sbjct: 1 MRVSARTDYAVRVLIELAAADSRPVTCEAIAESQQIPYRFLKAVVRDLRVAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87 GG + R A +I + DVV+A + Sbjct: 61 EGGYWIGREAAEIALADVVRAVDGELL 87 >gi|56708063|ref|YP_169959.1| hypothetical protein FTT_0970 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670534|ref|YP_667091.1| hypothetical protein FTF0970 [Francisella tularensis subsp. tularensis FSC198] gi|134301877|ref|YP_001121846.1| rrf2 family transcriptional regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|187931697|ref|YP_001891681.1| FeS assembly SUF system regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|224457151|ref|ZP_03665624.1| FeS assembly SUF system regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254370550|ref|ZP_04986555.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874866|ref|ZP_05247576.1| cysteine desulfurase activator complex subunit sufB [Francisella tularensis subsp. tularensis MA00-2987] gi|56604555|emb|CAG45603.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320867|emb|CAL08986.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|134049654|gb|ABO46725.1| transcriptional regulator, rrf2 family [Francisella tularensis subsp. tularensis WY96-3418] gi|151568793|gb|EDN34447.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|187712606|gb|ACD30903.1| FeS assembly SUF system regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|254840865|gb|EET19301.1| cysteine desulfurase activator complex subunit sufB [Francisella tularensis subsp. tularensis MA00-2987] gi|282159259|gb|ADA78650.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. tularensis NE061598] Length = 136 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A ++ P ++IAE ++ + K+L L A IV + RG Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119 Query: 121 VLTQYSIECLVRNR 134 +L++ SI +V N+ Sbjct: 120 LLSKTSIYDIVNNK 133 >gi|145638712|ref|ZP_01794321.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII] gi|145272307|gb|EDK12215.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII] gi|309750202|gb|ADO80186.1| transcriptional regulator IscR [Haemophilus influenzae R2866] Length = 150 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNTDGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG +L P++QI++ ++ A E+ V +C Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94 >gi|260912948|ref|ZP_05919433.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella dagmatis ATCC 43325] gi|260632938|gb|EEX51104.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella dagmatis ATCC 43325] Length = 154 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHSKRGPVSLSDISERQHISLSYLEQLFAKLRRYGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P ++I++ V+ A E+ V C + DC C S+ ++ Sbjct: 61 PGGGYQLGLPTNEISVGMVINAVNENIDVTRCHG--RGDCQEGIECLTHSLWKELSQRIE 118 Query: 120 DVLTQYSIECLV 131 D L + ++ LV Sbjct: 119 DFLNEITLAELV 130 >gi|239944195|ref|ZP_04696132.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 148 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD +RVLM A+ + P ++A + K++ L G+++ R Sbjct: 1 MRLTRFTDVALRVLMRLAVAEGTEAPT-TREVAATMRVPYTHAAKVVARLQHLGLLDARR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L +I +V+ E V EC CPL +C L LR A +AF Sbjct: 60 GRGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAF 117 Query: 119 FDVLTQYSIECLV 131 + L ++ LV Sbjct: 118 YAALDPITVADLV 130 >gi|197285716|ref|YP_002151588.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis HI4320] gi|194683203|emb|CAR43856.1| putative iron-sulfur cluster transcriptional regulator [Proteus mirabilis HI4320] Length = 164 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A QI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGREAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRN 133 L+ S+E LV N Sbjct: 120 SFLSSISLEELVNN 133 >gi|328541946|ref|YP_004302055.1| HTH-type transcriptional regulator NsrR [polymorphum gilvum SL003B-26A1] gi|326411696|gb|ADZ68759.1| HTH-type transcriptional regulator NsrR [Polymorphum gilvum SL003B-26A1] Length = 132 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I IA+ C + ++Q L K G +++V+GR GG+ L R +I++ ++V E Sbjct: 3 IDTIADRCRTGRPQVVHVVQILRKHGYIKSVQGRNGGIWLDRNPAEISLAEIVHLFESDL 62 Query: 87 FVAECFASHKI-DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 + ECF + C L +CG L +AL AF L +I L +++ Sbjct: 63 NLVECFEPKRTCRCTLQAACGFRRTLDRALQAFLAELEATTIADLAGETAAL 114 >gi|256822724|ref|YP_003146687.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796263|gb|ACV26919.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis DSM 16069] Length = 155 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A+H+ + P +++++ IS +L ++ L KA +V++VRG Sbjct: 1 MKLSTKGRYAVTAMLDLALHSGNGPITLAEVSSRQDISLSYLEQLFSKLRKASLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L RP+ QI+I +VV A E +C Sbjct: 61 PGGGYELKRPSSQISIAEVVLAVNEPISATKC 92 >gi|149927875|ref|ZP_01916126.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105] gi|149823497|gb|EDM82728.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105] Length = 163 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALQQDTGPVSLAGISQRQNISLSYLEQLFSKLRRHELVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG + R ++++ DV+ A +E +C K +C G C +T L +LN Sbjct: 61 PGGGYHIARALKEVSVADVILAVDEPLDATQCGG--KENCTDEGQC-MTHDLWSSLNTKM 117 Query: 119 FDVLTQYSIECLV 131 + L +++CLV Sbjct: 118 LEYLGSVTLQCLV 130 >gi|226328026|ref|ZP_03803544.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198] gi|225203730|gb|EEG86084.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198] Length = 164 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A QI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRN 133 L+ S+E LV N Sbjct: 120 SFLSSISLEELVNN 133 >gi|258511997|ref|YP_003185431.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478723|gb|ACV59042.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 136 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 11/137 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +L+ A +D P + IAE +SE +L +++ PL G V ++RG Sbjct: 1 MKISTKGRYGLMLLVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I I DV+ A E + + +ID GL + + A Sbjct: 61 AYGGYVLARHPREIVIEDVLLALEGPITIVD----EEID------DGLQVLWDRLREAIH 110 Query: 120 DVLTQYSIECLVRNRSS 136 DVL+ +++ LV R Sbjct: 111 DVLSSMTLQDLVELRQG 127 >gi|261820558|ref|YP_003258664.1| IscR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604571|gb|ACX87057.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium wasabiae WPP163] Length = 164 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNR 134 D L +++ LV N+ Sbjct: 119 DFLNNITLDELVNNK 133 >gi|253689401|ref|YP_003018591.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259493875|sp|C6DBJ2|ISCR_PECCP RecName: Full=HTH-type transcriptional regulator iscR gi|251755979|gb|ACT14055.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 164 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNR 134 D L +++ LV N+ Sbjct: 119 DFLNNITLDELVNNK 133 >gi|226308877|ref|YP_002768837.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187994|dbj|BAH36098.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 154 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + + P +++AE +S+ +L K L+ L AG+V GR GG L Sbjct: 6 GVEWSLHCCVVLSQAEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGRDGGYVL 65 Query: 67 CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120 R ++IT+LDVV+A TE +F E + P +CG+ V+ A A+ Sbjct: 66 TRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQCRSACGIAKVMADAEKAWRA 125 Query: 121 VLTQYSIECLVR--NRSSIKKIFN 142 L+ +I L + +++KI Sbjct: 126 SLSGVTIADLAATLDLPALRKILT 149 >gi|328552169|gb|AEB22661.1| transcriptional regulator [Bacillus amyloliquefaciens TA208] Length = 167 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M + +Y + L+Y D P++ I +AE +SE FL K+ L KAGIV + Sbjct: 1 MQYSAGVEYALHCLVYLI---DVPSKKSVGIRDLAEFQGLSETFLSKVFGKLSKAGIVNS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 V G +GG RL + + I+ DV++A E + +C Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|172041371|ref|YP_001801085.1| Rrf2 family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852675|emb|CAQ05651.1| putative transcriptional regulator (Rrf2 family) [Corynebacterium urealyticum DSM 7109] Length = 164 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M LT D G+RVLM + P RI +A+ S + K++ L G++ Sbjct: 1 MQLTTFADLGLRVLMVLGATQAVDAADRSPVRIQDLADQLNASRNHVAKVVNMLTSDGLL 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRK 113 E++RGR GGV + + ++ +++ E + V +C + + CPL C L L Sbjct: 61 ESIRGRYGGVHITEQGMRASVGALLRQLEGNREVVDCEGA--LQCPLARHDCALRRRLAA 118 Query: 114 ALNAFFDVLTQYSIECLV 131 A AFF L ++ LV Sbjct: 119 AQEAFFATLDGDTVGDLV 136 >gi|89054908|ref|YP_510359.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1] gi|88864457|gb|ABD55334.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1] Length = 141 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R +L A+ D P IA+ + + KI+ L ++GI + G Sbjct: 1 MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L R +QIT+LDV +A + E FAS +CP SC + S + L+ Sbjct: 61 KGGTHLARAPEQITLLDVYRAVDTQ----EIFASP--NCPPDASCPIGSQIGPVLDEVKA 114 Query: 121 VLTQ 124 TQ Sbjct: 115 KATQ 118 >gi|300717962|ref|YP_003742765.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299063798|emb|CAX60918.1| Transcriptional regulator [Erwinia billingiae Eb661] Length = 165 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + +D I + V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKSSDAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117 Query: 119 FDVLTQYSIECLVRNR 134 D L S+ LV N+ Sbjct: 118 SDFLNNISLAELVNNQ 133 >gi|225375164|ref|ZP_03752385.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM 16841] gi|225212990|gb|EEG95344.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM 16841] Length = 163 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A++N P + IA IS+ +L +I+ L KA V+++RG Sbjct: 21 MKVSTKGRYALRLMLDLAVNNTGEPISLKDIARRQGISDKYLEQIISVLNKAKYVKSIRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + ++ TI +++ TE S C C + C V +K A Sbjct: 81 AQGGYILTKKPEEYTIGMILRLTEGSLAPVACVEEENT-CEKIHDCATILVWQKMNEAIN 139 Query: 120 DVLTQYSIECLV 131 DV+ +++ LV Sbjct: 140 DVVDHMTLQDLV 151 >gi|251794316|ref|YP_003009047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247541942|gb|ACS98960.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 166 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 12/141 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + +Y + L+Y I N+ I ++A I E +L KI L KAGIV +V G Sbjct: 1 MQYSVGVEYALHCLVYL-IPNESTIGIKELAFFQGIPETYLSKIFTKLTKAGIVSSVPGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCP----LVGSCGLTS 109 +GG +L R D I+ DVV+A E + +C + DC GSC + Sbjct: 60 KGGFKLARVPDDISFWDVVEAVEGKKPIFQCQNIKDKGYLYRNRDCSDCAASTGSCSINL 119 Query: 110 VLRKALNAFFDVLTQYSIECL 130 V+ +A + L + L Sbjct: 120 VMLEAEETMQNYLRNKKLSWL 140 >gi|332969189|gb|EGK08221.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella kingae ATCC 23330] Length = 149 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQSHAVKLNAISERQQISLSYLEQLFSKLRRAGLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ADQI I ++ A E+ C S K +C C LT L + LN Sbjct: 61 PGGGYVLGKSADQINISQIIAAAEDRLDATLC--SGKANCQSGAPC-LTHNLWENLNHTI 117 Query: 120 D 120 D Sbjct: 118 D 118 >gi|295106061|emb|CBL03604.1| transcriptional regulator, BadM/Rrf2 family [Gordonibacter pamelaeae 7-10-1-b] Length = 136 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++ A + P + Q A +S +L ++ LVKAGI++++R Sbjct: 1 MMISTKGRYALRLMIDIASREQDGSPVTMRQAAAREDLSVKYLEQLGGALVKAGILKSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KAL 115 G GG L +PA+ IT DV++ATE C CP C + R + + Sbjct: 61 GVSGGYLLAKPAEDITAGDVLRATEGGCAPVACLEDGAEACPRRSECVAVNFWRGLDRTI 120 Query: 116 NAFFDVLT 123 + D +T Sbjct: 121 EGYVDGVT 128 >gi|256819570|ref|YP_003140849.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga ochracea DSM 7271] gi|256581153|gb|ACU92288.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga ochracea DSM 7271] Length = 145 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AIH+ +RI+ +AEA I FL KILQ L + ++ + +G Sbjct: 2 LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L Q ++ VV+ E+ C K +C C L + ++ + F Sbjct: 62 GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120 Query: 121 VLTQYSIECLVR 132 L++ SI + Sbjct: 121 ELSENSIASFAQ 132 >gi|302386870|ref|YP_003822692.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197498|gb|ADL05069.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 146 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 67/142 (47%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + Y +R+++ A+H +I+Q+AE IS+ +L +I+ L +AG V++ RG Sbjct: 1 MKFSTKGRYALRMMLEFALHPGECTKINQVAERQEISDKYLEQIVTILSRAGYVKSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L + + T+ +++ E S C C +C V ++ +A Sbjct: 61 QGGYYLTKDPSEYTVGMILRLAEGSLVPVTCLEDEVNPCSRSQNCATLMVWKELDHAISH 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 V+ ++ LV + + N Sbjct: 121 VVDGITLADLVEEQKRLDGQAN 142 >gi|317055144|ref|YP_004103611.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315447413|gb|ADU20977.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 144 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 8/129 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y +R++ A H D P ++ IAE IS+ +L +I+ L ++G V +V Sbjct: 1 MKISTKGRYALRLMTDLAEHKDDGYIPIKV--IAERQNISDKYLEQIISILSRSGYVRSV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---A 114 RG GG L P ++ T+ +++ TE S C + + CP +C + K A Sbjct: 59 RGAGGGYTLAYPPEKYTVGMILRLTEGSLAPVACLETDENLCPRAKACPTLFIWEKLYSA 118 Query: 115 LNAFFDVLT 123 +N D +T Sbjct: 119 INYVVDGIT 127 >gi|304320316|ref|YP_003853959.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis HTCC2503] gi|303299218|gb|ADM08817.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis HTCC2503] Length = 174 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 3 LTKRTDYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ Y +R VL+ A D I+ I+E I + FL +IL L + G++++ RG+ Sbjct: 23 ISQKAKYALRAMVLLARAHAEDEALIIADISERQNIPKKFLEQILLDLKRHGLLDSRRGK 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116 GG L RPADQIT +V++ E C + DC SC + V + + Sbjct: 83 NGGYMLLRPADQITFGEVLRIIEGPIAPLPCLSKMAYRKCEDCDGEKSCEIRRVFAEVAD 142 Query: 117 AFFDVLTQYSI 127 A VL + +I Sbjct: 143 ATRAVLDKTTI 153 >gi|257468462|ref|ZP_05632556.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317062725|ref|ZP_07927210.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688401|gb|EFS25236.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 136 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ +DY I++++Y + + +I+EA +S F KIL+ L K +VE+ RG Sbjct: 1 MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEQMSMKFALKILRRLCKVKLVESFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88 +GG +L + A+ I++ V++ + F+ Sbjct: 61 IKGGYKLKKSANDISLRSVIEVIQGDLFI 89 >gi|153812308|ref|ZP_01964976.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174] gi|149831715|gb|EDM86802.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174] Length = 147 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M K+T YG+ L+ A + P + IAE IS FL I + GIV++V+G Sbjct: 1 MKFCKKTRYGLTALVDLAAQPSTTPVALKTIAERNDISLQFLEHIFASFRRTGIVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L + AD+IT+ VV+ E S+ + + Sbjct: 61 SQGGYNLAKAADEITVASVVEVLEGSYHLED 91 >gi|310829310|ref|YP_003961667.1| RRF2 family protein [Eubacterium limosum KIST612] gi|308741044|gb|ADO38704.1| RRF2 family protein [Eubacterium limosum KIST612] Length = 135 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + A + + P I +IAE S+ ++ ++ L KAG++ ++RG Sbjct: 1 MRLSTKGRYGVLAMYELACRYGNGPVSIKEIAEKQNFSDSYMEQLFSTLKKAGLIVSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSC---GLTSVLRKAL 115 +GG L R I++ ++++A E +A+C C G C GL +R ++ Sbjct: 61 AKGGYILSREPRDISVGEIIRALEGPIELADCVGGPEGYVCRKSGECVTRGLWMEIRDSI 120 Query: 116 NAFFD 120 N D Sbjct: 121 NNIID 125 >gi|291447666|ref|ZP_06587056.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291350613|gb|EFE77517.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 156 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD +RVLM A+ + P ++A + K++ L G+++ R Sbjct: 9 MRLTRFTDVALRVLMRLAVAEGTEAPT-TREVAATMRVPYTHAAKVVARLQHLGLLDARR 67 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L +I +V+ E V EC CPL +C L LR A +AF Sbjct: 68 GRGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAF 125 Query: 119 FDVLTQYSIECLV 131 + L ++ LV Sbjct: 126 YAALDPITVADLV 138 >gi|153006770|ref|YP_001381095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030343|gb|ABS28111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +Y + L+ A+ ++ P + +A + E FL K+ L KAG+VE G RGG L Sbjct: 10 AEYALHSLLILAVRSE-PVSVRDLARFQDLPERFLAKLFTRLQKAGLVEATEGVRGGFAL 68 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 RPA +I + DV++A + + + EC A + C L G+ Sbjct: 69 ARPAARIAVRDVLEAVDPNRTLFEC-AEIRRHCALFGA 105 >gi|296536722|ref|ZP_06898782.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC 49957] gi|296262953|gb|EFH09518.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC 49957] Length = 183 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY + VL +A A I+E + K+L+ L A +VE +RG Sbjct: 26 LRLSKLTDYAVVVLARLEAEGGV-QTAPGLAAATGIAEPTVSKVLKHLGHASLVEGLRGA 84 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP I + DV+ A + + C C G C + A Sbjct: 85 RGGYRLARPLSSIPLSDVICAIDGPIALTACVDGATGGCEAEGLCPVRGRWDPVNEAIRA 144 Query: 121 VLTQYSIECLVRNRSS 136 L+ S+ + RS+ Sbjct: 145 ALSAISVADIAAPRSA 160 >gi|237733505|ref|ZP_04563986.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383338|gb|EEO33429.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 134 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 MHL TDY +R+++Y + + R+S ++++ I + ++FKIL+ L ++ +V + Sbjct: 1 MHLKMSTDYAVRIIIYLS---EKQCRVSSKELSKKLVIPQNYIFKILKILQESNLVNSYS 57 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 G GG L + IT+ D+++ATE + + C + Sbjct: 58 GSDGGFILKKEPKDITMFDIMQATETTTRINRCLEN 93 >gi|90417479|ref|ZP_01225402.1| rrf2 family protein [marine gamma proteobacterium HTCC2207] gi|90330720|gb|EAS45999.1| rrf2 family protein [marine gamma proteobacterium HTCC2207] Length = 158 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ IH +D P +S+I++ IS +L ++ L +A +V +VRG Sbjct: 1 MKLTTKGRYAVTAMLDLTIHCDDKPVSLSEISQRQSISLSYLEQLFSKLRQAELVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R ++ + I +++ A ES C K DC C S+ + + Sbjct: 61 PGGGYRLGRSSETVFIAEIIDAVNESVDSTNCQG--KGDCQGGEICLTHSLWDQLSHEIH 118 Query: 120 DVLTQYSIECLVRNR 134 + L S+ LV R Sbjct: 119 NFLNAISLADLVARR 133 >gi|322382961|ref|ZP_08056793.1| transcriptional regulator-like protein of cysteine biosynthesis [Paenibacillus larvae subsp. larvae B-3650] gi|321153081|gb|EFX45539.1| transcriptional regulator-like protein of cysteine biosynthesis [Paenibacillus larvae subsp. larvae B-3650] Length = 126 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A + + P + IAE +SE +L +++ PL AG+V+++RG GG L RPA+QIT Sbjct: 5 AARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQITTG 64 Query: 77 DVVKATE 83 +++ E Sbjct: 65 QIIRVLE 71 >gi|282882782|ref|ZP_06291389.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis 315-B] gi|300813432|ref|ZP_07093777.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297443|gb|EFA89932.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis 315-B] gi|300512449|gb|EFK39604.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 131 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG+ + MY N P + IA+ +SE +L ++ L K G+V +VR Sbjct: 1 MKLSTKGRYGL-MAMYRLSQNSGKGPMSLKDIADIENLSEAYLEQLFALLKKRGLVISVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + ++I I D++ A E ++ C + +++C + C +L++ + Sbjct: 60 GAGGGYELAKAPNEIHIGDIINALEGDIKLSCCDTNKRLECAKINGCPTKDILKELQSRM 119 Query: 119 FDVLTQYSI 127 +V+ ++ Sbjct: 120 EEVMDSLTL 128 >gi|78223114|ref|YP_384861.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194369|gb|ABB32136.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 153 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ L+Y A D P I+ +A I + FL IL L AG++++ +G+ Sbjct: 2 ISKKTKYALKALLYLAREYDRGPILIADLAREERIPKKFLELILLALKNAGVLQSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L P +IT+ V++ E C + +C SCG+ V++ +A Sbjct: 62 GGYYLAHPPREITMGKVIRTLEGPLAPVPCVSETAYARCEECDDEWSCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +L ++ ++ Sbjct: 122 MAQILDNATLAAVL 135 >gi|83310947|ref|YP_421211.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945788|dbj|BAE50652.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 149 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ +++ A H P I+ +AEA I + FL IL + G++ + +G+ Sbjct: 2 LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA++I + D+V+ + C + DC +C + +V++ +A Sbjct: 62 GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCLDEAACTVRAVMQDVRDA 121 Query: 118 FFDVLTQYSI 127 +L S+ Sbjct: 122 IAAILDNTSL 131 >gi|153003770|ref|YP_001378095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027343|gb|ABS25111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. Fw109-5] Length = 155 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K TDY I +L + A + ++A + + K+ + L KAG+V + RGR Sbjct: 2 IRMSKLTDYAIVLLAHLA-RSGRTLAAQELAARSGVPLPTVSKLCKELSKAGLVVSHRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA+ I++ ++V+A E + +C + K+ C + +C A FD Sbjct: 61 HGGYGLARPAELISVAEIVEALEGPIALTDCTSPAKVACGIEATC--------PAKASFD 112 Query: 121 VLTQ 124 +T+ Sbjct: 113 PVTR 116 >gi|253988842|ref|YP_003040198.1| DNA-binding transcriptional regulator IscR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780292|emb|CAQ83453.1| hth-type transcriptional regulator iscr [Photorhabdus asymbiotica] Length = 164 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I + +V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGRDAGKIVVAEVIFAVDESVDATRCQG--KEGCQGGDRCLTHALWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNR 134 L+ S++ LV N+ Sbjct: 119 SFLSSISLKELVNNQ 133 >gi|62262806|gb|AAX78104.1| unknown protein [synthetic construct] Length = 171 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A ++ P ++IAE ++ + K+L L A IV + RG Sbjct: 28 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGI 87 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + Sbjct: 88 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 145 Query: 121 VLTQYSIECLVRNRS 135 +L++ SI +V N+ Sbjct: 146 LLSKTSIYDIVNNKD 160 >gi|307824416|ref|ZP_07654641.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] gi|307734400|gb|EFO05252.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] Length = 157 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A H+ P ++ IA IS +L ++ L +AG+V+ VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAFHSQIKPVTLTDIAARQTISLSYLEQLFARLRRAGMVKGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 GG +LCR I I D++ A E +C + +C +C GL+ +R Sbjct: 61 PGGGYKLCRKTSDINIADIIAAVNEPLDSTKCGG--EANCQKDQACLTHDLWMGLSEQIR 118 Query: 113 KALN--AFFDVLTQYSI-ECLVRNRSSIKKIFN 142 L + D+L + + E +R +++ Sbjct: 119 DYLKGISLADLLEKNQVQEVAIRQHHDAQQVIE 151 >gi|40063431|gb|AAR38242.1| rrf2 family protein [uncultured marine bacterium 580] Length = 159 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 8/145 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P ++S+I++ IS +L ++ L K G+V++VRG Sbjct: 1 MKLTTKGRFAVTAMLDLALNEKNMPIKLSEISQRQSISLSYLEQLFGKLRKQGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG + + D I++ +++ + +E +C K +C C +T L LN+ Sbjct: 61 PGGGYLVAKNHDNISVKNIISSVDEQIDATQCGG--KENCNEGHQC-ITHNLWTTLNSKI 117 Query: 119 FDVLTQYSIECLV---RNRSSIKKI 140 D L +++ LV RN+S + I Sbjct: 118 LDYLESTTLDELVKTQRNKSENQSI 142 >gi|50122160|ref|YP_051327.1| DNA-binding transcriptional regulator IscR [Pectobacterium atrosepticum SCRI1043] gi|81644317|sp|Q6D258|ISCR_ERWCT RecName: Full=HTH-type transcriptional regulator iscR gi|49612686|emb|CAG76136.1| putative transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 164 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGRES--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNR 134 D L +++ LV N+ Sbjct: 119 DFLNNITLDELVNNK 133 >gi|331698727|ref|YP_004334966.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953416|gb|AEA27113.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia dioxanivorans CB1190] Length = 160 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 10/104 (9%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAE--- 90 +S +L K LQ L +AG+V +V+G+ GG +L R IT+LDVV+A + +S FV Sbjct: 35 VSPTYLAKQLQALSRAGLVRSVQGQAGGYQLTRDPQAITVLDVVEAVDGRQSAFVCTEIR 94 Query: 91 ---CFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 FA+ C + CG+ SV+ A A+ D L +I L Sbjct: 95 QRGPFAATPEQCRV--PCGIASVMYDADRAWRDSLRATTIADLA 136 >gi|223040640|ref|ZP_03610910.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus RM3267] gi|222878098|gb|EEF13209.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus RM3267] Length = 134 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y A D P+ + ++ IS+ FL KILQ L + GI+ + +G Sbjct: 1 MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILISFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHK 96 GG L + I+I V+++ E+ V EC S + Sbjct: 60 NGGFMLAQKPGDISIKRVIESAEKRKMAVFECSISQE 96 >gi|157738497|ref|YP_001491181.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri RM4018] gi|315635366|ref|ZP_07890633.1| transcriptional regulator superfamily protein [Arcobacter butzleri JV22] gi|157700351|gb|ABV68511.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri RM4018] gi|315480351|gb|EFU71017.1| transcriptional regulator superfamily protein [Arcobacter butzleri JV22] Length = 152 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 2/128 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K+TDY +R L A D I +++E+ + FL I+ + +AG V+++ GR Sbjct: 1 MKVSKKTDYALRALFAIA-EADNLISIRELSESVDVPRRFLENIMLEMNRAGWVKSIPGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +D+IT+ +V++ E + C + S+ C G C V N Sbjct: 60 YGGYVLAKGSDEITLGEVIRYFEGMIAMISCVSVSNYEPCSQEGKCYFRRVFLNIRNLTA 119 Query: 120 DVLTQYSI 127 +L + +I Sbjct: 120 QILDKTTI 127 >gi|325261733|ref|ZP_08128471.1| Rrf2 family protein [Clostridium sp. D5] gi|324033187|gb|EGB94464.1| Rrf2 family protein [Clostridium sp. D5] Length = 128 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY IR+L ++ + + + I +A + E F +KI++ L KAG V RG Sbjct: 1 MLLTRENDYAIRILR--SLKDKEKHTVKDICQAEEVPEAFAYKIIRKLQKAGFVAVERGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG RL +T+ DVV A + + C Sbjct: 59 AGGCRLGTDLKSLTLYDVVTAVDAEPLIMPCM 90 >gi|282849798|ref|ZP_06259182.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|282580735|gb|EFB86134.1| Rrf2 family protein [Veillonella parvula ATCC 17745] Length = 149 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ A D P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAAKLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88 + GG RL + + TI++++ ATEES + Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAI 89 >gi|299822827|ref|ZP_07054713.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816356|gb|EFI83594.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 148 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ V + A + P + IAEA +SE +L +++ PL AGIV+++RG Sbjct: 8 MKITTKGRYGLTVTLELARQVGNGPISLRSIAEAKGLSEHYLEQLIGPLRNAGIVKSIRG 67 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L +IT DV++ E + E + + Sbjct: 68 AYGGYVLNHDPSEITAGDVIRTLEGPIVLVEGMENEE 104 >gi|75911214|ref|YP_325510.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704939|gb|ABA24615.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis ATCC 29413] Length = 156 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 5/113 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +S I+ I E +L +IL L +AG+V++ RG RGG L R Q+T+L+VV + Sbjct: 39 PTTMSDISAKHPIPERYLEQILSSLRRAGVVQSQRGSRGGFVLTREPRQLTLLEVVIMLD 98 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 E + ++ LV C + ++A A ++L+QY+I+ L R + Sbjct: 99 GEQKEKESPSEENLEKSLV--C---EIWQQADVAAQNILSQYTIQDLCDQREA 146 >gi|291303191|ref|YP_003514469.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572411|gb|ADD45376.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 160 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 40/64 (62%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 +Q+AE + +L K LQ LVKAGI+ G RGG RL +PA ++T+L +V+A + + Sbjct: 32 AQLAEYYDLPPAYLAKQLQVLVKAGILAATTGARGGFRLAKPAAEVTLLAIVEAVDGTAS 91 Query: 88 VAEC 91 EC Sbjct: 92 PYEC 95 >gi|284046839|ref|YP_003397179.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283951060|gb|ADB53804.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 157 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + +YG+R+++ + P + IA A + +L +++ L KA +V + RG Sbjct: 1 MIFSSKAEYGVRLMVELGRQGAEQPISLKAIAAAEQLPLAYLEQVVARLKKAELVRSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 GG L RPA++IT+ +VV A E + ECF + + Sbjct: 61 AHGGYWLARPAEEITMDEVVLALEGAIAPMECFVNEHTE 99 >gi|145636353|ref|ZP_01792022.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH] gi|148827518|ref|YP_001292271.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG] gi|319775754|ref|YP_004138242.1| transcriptional regulator [Haemophilus influenzae F3047] gi|329123595|ref|ZP_08252155.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus aegyptius ATCC 11116] gi|145270518|gb|EDK10452.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH] gi|148718760|gb|ABQ99887.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG] gi|301169081|emb|CBW28678.1| DNA-binding transcriptional repressor [Haemophilus influenzae 10810] gi|317450345|emb|CBY86561.1| predicted transcriptional regulator [Haemophilus influenzae F3047] gi|327469794|gb|EGF15259.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus aegyptius ATCC 11116] Length = 150 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG +L P++QI++ ++ A E+ V +C Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94 >gi|94501139|ref|ZP_01307662.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter sp. RED65] gi|94426715|gb|EAT11700.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter sp. RED65] Length = 160 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH + P ++ I+ IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHGQHKPVSLNDISGRQGISLSYLEQLFAKLRRCDLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL R +I+I VV A ES C K DC C L L + ++ Sbjct: 61 PGGGYRLSREGSEISIAQVVDAVNESMDATRCRG--KGDCQEGDQCLTHHLWQDLSQQIH 118 Query: 117 AFFDVLTQYSIECLVRNR 134 AF L+ SI LV + Sbjct: 119 AF---LSDISIADLVSRK 133 >gi|73662780|ref|YP_301561.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495295|dbj|BAE18616.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 127 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +K T+Y + L++ +N RI +A+A IS +L KIL LVK G++ Sbjct: 1 MKYSKATNYALHALLFMIKNNGDVQRIPVQDLAKALGISTTYLSKILTRLVKVGVISASS 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 G +GG +L +TI +V+ + + E +H CP+ Sbjct: 61 GAKGGYQLSLNWQDVTIYEVITTIDGKQSLFEDSFNHGDSCPI 103 >gi|308172347|ref|YP_003919052.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307605211|emb|CBI41582.1| putative transcriptional regulator [Bacillus amyloliquefaciens DSM 7] Length = 167 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M + +Y + L+Y D P++ I +AE +SE FL K+ L KAGIV + Sbjct: 1 MQYSAGVEYALHCLVYLI---DVPSKKSVGIRDLAEFQGLSESFLSKVFGKLSKAGIVNS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 V G +GG RL + + I+ DV++A E + +C Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|210635349|ref|ZP_03298496.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279] gi|210158434|gb|EEA89405.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279] Length = 160 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +RV++ A H D RI QIA ISE +L IL LV+ G++ +R Sbjct: 15 MLVSTKGRYALRVMVDLAEHRD-EGRIPLRQIAVRQDISEKYLENILSTLVRHGMLSGLR 73 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115 G+ GG L R ++ T+ ++++ TE S C C +C V L + + Sbjct: 74 GKGGGYCLTREPEEFTLGEILRLTEGSLSPVSCLNGPHNTCERAATCRTVRVWTELDRMI 133 Query: 116 NAFFDVLTQYSIEC 129 + D +T + C Sbjct: 134 QEYLDGVTIADLMC 147 >gi|150019861|ref|YP_001312115.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906326|gb|ABR37159.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 137 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M++ + +DY R+++ + D ++E I FL K+ + L +AGI+++ RG Sbjct: 1 MNINQESDYAFRIILMLSKEGLDNKLDAKSLSEKGNIPLRFLLKLTRKLTQAGILKSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 GG + R IT+ DVV+A + V C K G C + L N Sbjct: 61 VNGGYAITREPKDITLKDVVEAIQGPIIVTRCVYDGKACSANKAGHCSIHKALYNIQNTM 120 Query: 119 FDVLTQYSIECL 130 + L + + + L Sbjct: 121 INELEKVNFDKL 132 >gi|119718638|ref|YP_925603.1| BadM/Rrf2 family transcriptional regulator [Nocardioides sp. JS614] gi|119539299|gb|ABL83916.1| transcriptional regulator, BadM/Rrf2 family [Nocardioides sp. JS614] Length = 152 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 34/151 (22%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57 M ++ ++DY +R L+ A D R E + E+ FL IL L +AGIV + Sbjct: 1 MRVSAKSDYALRALIEMASRAD--GRAVSAEELGRLQEIPHGFLQAILADLRRAGIVMSQ 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL---------- 107 RG+ GG R+ R A +++ DV++A +D PLV GL Sbjct: 59 RGQSGGWRMGRSAADVSVADVIRA---------------VDGPLVSVYGLRPEAVSYNEA 103 Query: 108 TSVLRK----ALNAFFDVLTQYSIECLVRNR 134 VL+ A ++ DV Q SI+ L R Sbjct: 104 ADVLQHVWIAARHSLRDVFEQVSIQQLADGR 134 >gi|227112705|ref|ZP_03826361.1| DNA-binding transcriptional regulator IscR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329514|ref|ZP_03833538.1| DNA-binding transcriptional regulator IscR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 164 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNR 134 D L +++ LV N+ Sbjct: 119 DFLNNITLDELVNNK 133 >gi|16272327|ref|NP_438540.1| hypothetical protein HI0379 [Haemophilus influenzae Rd KW20] gi|145634625|ref|ZP_01790334.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA] gi|260580558|ref|ZP_05848386.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae RdAW] gi|1175234|sp|P44675|Y379_HAEIN RecName: Full=Putative HTH-type transcriptional regulator HI_0379 gi|1573349|gb|AAC22037.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|145268170|gb|EDK08165.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA] gi|260092900|gb|EEW76835.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae RdAW] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG +L P++QI++ ++ A E+ V +C Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94 >gi|330469219|ref|YP_004406962.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812190|gb|AEB46362.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 153 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%) Query: 1 MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ R DY +R + A P QIA A I FL IL L + GI++ Sbjct: 1 MRLSARVDYALRAVTELASVTGAGRGRPVTADQIARAQDIPPKFLESILLQLRRGGIMQA 60 Query: 57 VRGRRGGVRLCRPADQITILDVVK 80 RG GG L RPA++I++ DV++ Sbjct: 61 QRGPEGGYWLARPAEEISLADVIR 84 >gi|68248982|ref|YP_248094.1| hypothetical protein NTHI0499 [Haemophilus influenzae 86-028NP] gi|145631834|ref|ZP_01787593.1| predicted transcriptional regulator [Haemophilus influenzae R3021] gi|145632626|ref|ZP_01788360.1| predicted transcriptional regulator [Haemophilus influenzae 3655] gi|145640331|ref|ZP_01795915.1| predicted transcriptional regulator [Haemophilus influenzae R3021] gi|229844533|ref|ZP_04464673.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1] gi|229846466|ref|ZP_04466574.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1] gi|68057181|gb|AAX87434.1| predicted transcriptional regulator [Haemophilus influenzae 86-028NP] gi|144982553|gb|EDJ90107.1| predicted transcriptional regulator [Haemophilus influenzae R3021] gi|144986821|gb|EDJ93373.1| predicted transcriptional regulator [Haemophilus influenzae 3655] gi|145274917|gb|EDK14779.1| predicted transcriptional regulator [Haemophilus influenzae 22.4-21] gi|229810559|gb|EEP46277.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1] gi|229812782|gb|EEP48471.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1] gi|309972462|gb|ADO95663.1| transcriptional regulator IscR [Haemophilus influenzae R2846] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG +L P++QI++ ++ A E+ V +C Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94 >gi|37527164|ref|NP_930508.1| DNA-binding transcriptional regulator IscR [Photorhabdus luminescens subsp. laumondii TTO1] gi|81833923|sp|Q7N223|ISCR_PHOLL RecName: Full=HTH-type transcriptional regulator iscR gi|36786598|emb|CAE15658.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 164 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + +V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKDASEIVVAEVIFAVDESVDATRCQGREG--CQGGDRCLTHALWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNR 134 L+ S+E LV N+ Sbjct: 119 GFLSSISLEELVNNQ 133 >gi|210608482|ref|ZP_03287858.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787] gi|210153058|gb|EEA84064.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787] Length = 142 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + +++ A+H+ ++ R+ IA +SE +L +I++ + ++ + R Sbjct: 1 MRISTKGTYALEIIVDLAMHSSEEHLERLKNIAARRGLSEKYLERIVKAMKNENLILSTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 G GG RL R + IT+LDV+++ E EC Sbjct: 61 GAMGGYRLARRPEDITVLDVLRSVEGELAPVECLTKE 97 >gi|319892680|ref|YP_004149555.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius HKU10-03] gi|317162376|gb|ADV05919.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius HKU10-03] gi|323464282|gb|ADX76435.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMIALAKRHGTGCVSLKTIAEENGLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L A +IT D+++ E + E S G + + NA Sbjct: 61 AKGGYELKMSATEITAGDIIRLLEGPLTIVERMESE--------PPGQQQLWLRMRNAVR 112 Query: 120 DVLTQYSIECL 130 +VL Q +++ L Sbjct: 113 EVLDQTTLQSL 123 >gi|89256550|ref|YP_513912.1| hypothetical protein FTL_1231 [Francisella tularensis subsp. holarctica LVS] gi|115314981|ref|YP_763704.1| transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|156502669|ref|YP_001428734.1| rrf2 family transcriptional regulator [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010975|ref|ZP_02275906.1| transcriptional regulator family protein [Francisella tularensis subsp. holarctica FSC200] gi|254369464|ref|ZP_04985476.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp. holarctica FSC022] gi|290953094|ref|ZP_06557715.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. holarctica URFT1] gi|295313700|ref|ZP_06804282.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. holarctica URFT1] gi|89144381|emb|CAJ79670.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129880|gb|ABI83067.1| probable transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|156253272|gb|ABU61778.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122414|gb|EDO66554.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp. holarctica FSC022] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSTAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + IT+LD+VK E+ + C K C L G+C ++ + + Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTGCCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119 Query: 121 VLTQYSIECLVRNR 134 +L++ SI +V N+ Sbjct: 120 LLSKTSIYDIVNNK 133 >gi|319780584|ref|YP_004140060.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166472|gb|ADV10010.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 156 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ A + ++ +A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLARLPAGQLAFVNDVATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL RPAD+I + VV+ + C + + DC +C + ++ + A Sbjct: 62 GGYRLARPADEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120 Query: 118 FFDVLTQYSI 127 +VL Q S+ Sbjct: 121 IAEVLDQRSL 130 >gi|325003478|ref|ZP_08124590.1| rrf2 family protein, putative transcriptional regulator [Pseudonocardia sp. P1] Length = 156 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 9/131 (6%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R G+ ++C ++ + P S++A + +L K +Q LV+AG+ E+V G RG Sbjct: 2 RMGQGVEWALHCCLNLAWTGEPVPGSRLAAFYDLPPAYLTKQMQALVRAGVCESVPGPRG 61 Query: 63 GVRLCRPADQITILDVV---KATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALN 116 G RL R +++++LDVV + E++F + P GSC + +R+A Sbjct: 62 GFRLVRAPEEVSLLDVVVALEGPEDAFRCTSILGAAPGGDPAADYSGSCAFSLSMRRAEL 121 Query: 117 AFFDVLTQYSI 127 A+ L S+ Sbjct: 122 AWRRELAARSL 132 >gi|299537268|ref|ZP_07050571.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1] gi|298727509|gb|EFI68081.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1] Length = 166 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 18/145 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M + +Y + L+Y D P I ++E +SE +L K+L L K GIV + Sbjct: 1 MKYSVMVEYALHSLVYLI---DVPKNESIGIKDLSEFQGLSETYLSKVLGKLSKEGIVSS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGS---C 105 V G +GG RL R + IT DVV+A E + +C + + K C S C Sbjct: 58 VSGVKGGYRLNRKPEDITFWDVVRAVEGEEPIFQCKNIKANFAYLNKKQKCESCSSQSNC 117 Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130 + SV+ +A + L +I L Sbjct: 118 TINSVMLEAEEHMRNYLRSKTIAWL 142 >gi|154503497|ref|ZP_02040557.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149] gi|153795597|gb|EDN78017.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149] Length = 132 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR+++Y A + +++E IS+ F++KI++ L AGI+ G Sbjct: 1 MQLNIATDYAIRIVIYMAKQRRIVSS-RELSENLKISQPFIYKIMRKLNHAGILAINTGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119 GG L + +QI + +++ E + C + C +C L K F Sbjct: 60 HGGYILQKETEQINLFEIMDTMERTMKWNRCLEDDRYCSCFATEACRLRETYLKMQEHFE 119 Query: 120 DVLTQYSIECLVR 132 + L + +I+ +++ Sbjct: 120 NELKETTIQKIIK 132 >gi|295095801|emb|CBK84891.1| rrf2 family protein (putative transcriptional regulator) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 169 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 11/137 (8%) Query: 8 DYGIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YGI LM A N+ + ++A + +L KI L +AG+V + G+ GG R Sbjct: 9 EYGIHSLMCMVDAKGNEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVISTEGKGGGFR 68 Query: 66 LCRPADQITILDVVKATEESFFVAECFASHK-----IDCPLV----GSCGLTSVLRKALN 116 L RPA+ I++LDV A + + EC + + P G CG+ SV+ A Sbjct: 69 LARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMDSAQQ 128 Query: 117 AFFDVLTQYSIECLVRN 133 + L +++I L R Sbjct: 129 RMEEELGRHTILDLARK 145 >gi|315498886|ref|YP_004087690.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis excentricus CB 48] gi|315416898|gb|ADU13539.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis excentricus CB 48] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R Y IR + A I + ++AE FL IL L + G + + RGR Sbjct: 2 LSQRAKYAIRAMQEMARIPQGQTVQAGELAERIKAPLHFLEGILLELRREGFLMSKRGRS 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RP+D I++ D+++ + + C + DCP C L VL A +A Sbjct: 62 GGYMLARPSDMISMADLIRLIDGPLALTPCASRTAYARCEDCPTPDDCQLRLVLLAARDA 121 Query: 118 FFDVLTQYSI-ECLVRN 133 VL ++ E L R Sbjct: 122 MARVLESSTLAEPLPRG 138 >gi|297623328|ref|YP_003704762.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164508|gb|ADI14219.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix DSM 17093] Length = 146 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LT++ Y ++ L++ A + P I+ IAE+ IS+ FL IL L GI+++ +G Sbjct: 2 ISLTQKAKYALKALVFLAKAYGKGPVLIANIAESEGISQKFLELILLELKNHGILQSKKG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKAL 115 R GG L RP ++I + V++ E + C + S +C +C + +V+ + Sbjct: 62 RGGGYWLNRPPEEIYLGHVIRIFEGALAPLPCASKRYYSRCEECADEATCEVRAVMLEVK 121 Query: 116 NAFFDVLTQYSIE 128 A VL S++ Sbjct: 122 KATLGVLDTTSLK 134 >gi|255767629|ref|NP_390630.2| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. subtilis str. 168] gi|296333158|ref|ZP_06875611.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675336|ref|YP_003867008.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii str. W23] gi|321312279|ref|YP_004204566.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis BSn5] gi|229462859|sp|O34527|CYMR_BACSU RecName: Full=HTH-type transcriptional regulator CymR; AltName: Full=Cysteine metabolism repressor gi|225185257|emb|CAB14694.2| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. subtilis str. 168] gi|296149356|gb|EFG90252.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413580|gb|ADM38699.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii str. W23] gi|320018553|gb|ADV93539.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis BSn5] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L D IT D+++ E E + Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEE 97 >gi|145628736|ref|ZP_01784536.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae 22.1-21] gi|144979206|gb|EDJ88892.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae 22.1-21] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG +L P++QI++ ++ A E+ V +C Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94 >gi|88858497|ref|ZP_01133139.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas tunicata D2] gi|88820114|gb|EAR29927.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas tunicata D2] Length = 162 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + L+ A+H + P +++I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTALLDVALHTNVGPVCLAEISERQEISLSYLEQLFARLRKQGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG L + A +I++ DV+ A +ES C Sbjct: 61 PGGGYLLGKEASEISVGDVISAVDESVDATRCHG 94 >gi|325971575|ref|YP_004247766.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta sp. Buddy] gi|324026813|gb|ADY13572.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy] Length = 135 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ + Y ++ ++Y A + + I I+EA IS +L +++ PL +AG+V+ RG Sbjct: 1 MKLSTKGRYSLQTMVYLATCRENCS-IRSISEATGISSGYLEQLMIPLRRAGLVQAERGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL + IT +V+ A+E F C +CP +C + + D Sbjct: 60 QGGYRLAKSG--ITCAEVLSASEGDFEPVPCR-----NCPRTDACKTHQIWTMLQSTVVD 112 Query: 121 VLTQYSIECLVRN 133 +Q +I+ L + Sbjct: 113 FTSQVTIDELASH 125 >gi|261405438|ref|YP_003241679.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281901|gb|ACX63872.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L R IT DV++ E Sbjct: 61 AYGGYILSRDPASITAGDVIRVLE 84 >gi|315303269|ref|ZP_07873911.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] gi|313628359|gb|EFR96850.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] Length = 140 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A + P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESIEDEE--------AAQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ S Sbjct: 113 DVLDQTTLADLLKHTSD 129 >gi|160895037|ref|ZP_02075811.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50] gi|156863468|gb|EDO56899.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50] Length = 156 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + Y +R+++Y A + N P I +A+ IS+ +L +I+ L G+V +VRG Sbjct: 13 LKISTKGRYALRLMIYIAANSNGKPVSIKDVAKNEDISDKYLEQIISILNSGGLVRSVRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT+ V++ TE + C +C C ++ ++ +A Sbjct: 73 PQGGYLLRKAPEDITVGAVLRLTEGTLAPVACVEEDAPECERESICSTYNLWKQLYSAIC 132 Query: 120 DVLTQYSIECLVRNR 134 V+ +I L +R Sbjct: 133 SVVDTTTIADLCNSR 147 >gi|152993458|ref|YP_001359179.1| BadM/Rrf2 family transcriptional regulator [Sulfurovum sp. NBC37-1] gi|151425319|dbj|BAF72822.1| transcriptional regulator, BadM/Rrf2 family [Sulfurovum sp. NBC37-1] Length = 132 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ T+Y + L + D P Q+A I + FL KILQ + K GI+E+ +G Sbjct: 1 MLLTRATEYALLSLDSIS-KADKPVGAEQLANELNIPKSFLAKILQNMAKQGILESRKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP--LVGSCGLTSVL---RKA 114 GG L + + ITI ++ A E V +C +S+ CP +G+C ++ + + Sbjct: 60 HGGFVLAQTINDITINSIIFAAEGKLPAVFDC-SSYSETCPNGAIGTCVISPFIANFQTK 118 Query: 115 LNAFFDVLT 123 +N F + LT Sbjct: 119 INNFLEGLT 127 >gi|329926792|ref|ZP_08281200.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5] gi|328938992|gb|EGG35360.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L R IT DV++ E Sbjct: 61 AYGGYILSRDPASITAGDVIRVLE 84 >gi|312144048|ref|YP_003995494.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] gi|311904699|gb|ADQ15140.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] Length = 149 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R LMY A + +IAE ISE +L ++ L KA +V+ +RG Sbjct: 1 MEISSQARYGLRALMYIAASEGSQAIPLREIAEKQNISERYLEQLFAKLKKADLVKGIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + ++IT D++K E Sbjct: 61 AHGGYLLNQSPEEITAADILKVLE 84 >gi|148654472|ref|YP_001274677.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566582|gb|ABQ88727.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus sp. RS-1] Length = 146 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R L+ A + P + I I E +L +IL L +A ++E++RG Sbjct: 1 MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRARLIESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R QIT+LD + A E A+ D P ++R+ + Sbjct: 61 PQGGHRLARHPSQITVLDALLALEGPLLAADSGR----DAPTPTEPMDRELVREVWDGAR 116 Query: 120 DVLTQY 125 ++L +Y Sbjct: 117 EMLERY 122 >gi|311069236|ref|YP_003974159.1| transcriptional regulator of cysteine biosynthesis [Bacillus atrophaeus 1942] gi|310869753|gb|ADP33228.1| transcriptional regulator of cysteine biosynthesis [Bacillus atrophaeus 1942] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H D P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGDGPTSLKTIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L + IT D+++ E E + Sbjct: 61 AYGGYVLGSEPETITAGDIIRVLEGPISPVEVLEDEE 97 >gi|290960745|ref|YP_003491927.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260650271|emb|CBG73387.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 152 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ D P + IA I FL IL L + G+V + RG Sbjct: 1 MRISARADYAVRAVLEVAVRQDGGPVKAEVIATVQEIPHKFLEGILGDLRRGGLVTSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL R IT+ DV++A + Sbjct: 61 GSGGYRLAREPAAITVADVIRAVD 84 >gi|332186375|ref|ZP_08388120.1| feS assembly SUF system regulator [Sphingomonas sp. S17] gi|332013743|gb|EGI55803.1| feS assembly SUF system regulator [Sphingomonas sp. S17] Length = 151 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 11/151 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY + V+M A R + +A + K++ L AG++E+ R Sbjct: 1 MRLSSLADYAV-VMMTAAAREGVGGRSNATLLAGQTGVPLPTAQKLVSRLAGAGLIESTR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS---VLRKAL 115 G GG+RL R AD I++ D+V+A + + C DC L C + V+ +A+ Sbjct: 60 GTGGGIRLARDADAISLADIVEAVDGPIALTACVEGAAHDCGLEMQCRVRPHWHVVNQAV 119 Query: 116 NAFFD-----VLTQYSIECLVRNRSSIKKIF 141 A F L +E V + S +F Sbjct: 120 RAAFSGVTLATLAADPVESQVMDASPRPGVF 150 >gi|323136514|ref|ZP_08071596.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] gi|322398588|gb|EFY01108.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] Length = 157 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + ++ IA A I + FL IL L AG V + +G+ Sbjct: 2 LTKKAKYGLKAMVHLAGVEPGQTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116 GG L R +I++ ++V+A + +C AS I DC C + V+ +A + Sbjct: 62 GGYMLARLPSEISVGNLVRALDGPLAPIQC-ASKTIYRRCDDCVDEKHCSVRLVMMEARD 120 Query: 117 AFFDVLTQYSIE 128 A VL S+E Sbjct: 121 AIAKVLDNTSLE 132 >gi|295104009|emb|CBL01553.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii SL3/3] Length = 157 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG RL + T ++++A E S C S +CP+ C + L + +N Sbjct: 61 SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 QYIDSVT 127 >gi|289643651|ref|ZP_06475764.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of Datisca glomerata] gi|289506542|gb|EFD27528.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of Datisca glomerata] Length = 151 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 20/142 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A N + +A A + FL IL L ++G+V + RG Sbjct: 1 MQISARADYALRALLTLAASNGDLVKGETLATAQDLPLRFLENILTDLRRSGLVRSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RLCRPA++IT+ V++AT D PL G R+ A ++ Sbjct: 61 DGGYRLCRPANEITVAMVIRAT---------------DGPLASVRG-----RRPEEAVYE 100 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 ++ E + R SI+++ Sbjct: 101 GAAKHLQEVWIAVRVSIRRVLE 122 >gi|162148831|ref|YP_001603292.1| Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209545421|ref|YP_002277650.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787408|emb|CAP57003.1| putative transcriptional regulator, rrf2 family [Gluconacetobacter diazotrophicus PAl 5] gi|209533098|gb|ACI53035.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 161 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY + L+ A D +++A I E + K+L+ L +V ++RG Sbjct: 2 LKLSKLTDYAVVALVRLA-QEDEVMTSPALSQATGIPEPTVAKVLKILAVHDLVVSLRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFF 119 RGG RL RP + I++ V+ A + + C D P G CG + A+ Sbjct: 61 RGGYRLARPLNDISVARVITAVDGPISLTACVDGGGCDTRPFCGVCGQWDAVNDAIRGAL 120 Query: 120 DVLT 123 +T Sbjct: 121 SAIT 124 >gi|90419967|ref|ZP_01227876.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336008|gb|EAS49756.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 139 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++R Y IR L A P + IA I FL IL L +AG++ ++RG RG Sbjct: 2 ISQRARYAIRSLRNIAPRA-APVSAAVIAVEEQIPRKFLEAILAELKQAGLLVSLRGARG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118 G RL RP +QI+ DV++ + +A C + DC V SC + L +A Sbjct: 61 GYRLARPGEQISFADVLRVVDGPLALAPCASRTAYRRCEDCRDVESCETRTALLAVRDAT 120 Query: 119 FDVL 122 +L Sbjct: 121 AAIL 124 >gi|242240170|ref|YP_002988351.1| DNA-binding transcriptional regulator IscR [Dickeya dadantii Ech703] gi|242132227|gb|ACS86529.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech703] Length = 164 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDASEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNR 134 + L +++ LV N+ Sbjct: 119 EFLNNITLDELVNNK 133 >gi|116669822|ref|YP_830755.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24] gi|116609931|gb|ABK02655.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24] Length = 136 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 13/122 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---- 83 +++AE + +L K LQ LV+AGI+ +V G RGG +L R A+ IT+LDVV A E Sbjct: 4 ARLAELYQLPAAYLNKQLQALVRAGILYSVSGPRGGFQLARGAETITVLDVVLAIEGPDP 63 Query: 84 ----ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 ES A D + SC ++ +R+A A+ L++ +I + +S+++ Sbjct: 64 AFRCESILANAPGADPGED--YLRSCLVSQTMRQAELAWRQTLSRQTIAGIA---ASVER 118 Query: 140 IF 141 F Sbjct: 119 KF 120 >gi|290968839|ref|ZP_06560376.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781135|gb|EFD93726.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 144 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IR+L A+ + I +I++ I F +KI + L AG +E +RG Sbjct: 1 MIITRETDYAIRILR--ALEGKDVSSIREISDTEYIPLQFAYKIAKKLDHAGCIEIIRGP 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG RL + +T+ ++++ T+ V C Sbjct: 59 HGGCRLVKDLHAVTLFEIIQITDRENMVTSCM 90 >gi|228993237|ref|ZP_04153158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228999285|ref|ZP_04158865.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|229006840|ref|ZP_04164473.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228754462|gb|EEM03874.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228760482|gb|EEM09448.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|228766563|gb|EEM15205.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] Length = 151 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 +GG L R D+IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 68 KGGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A VL +++ LV N +S IKK Sbjct: 128 AMESVLANVTVQQLVTNLQSKIKK 151 >gi|219667205|ref|YP_002457640.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|219537465|gb|ACL19204.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 147 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A+H+ + +S IAE ISE +L ++ L KAGI+ +V+G Sbjct: 1 MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89 +GG L A +I + +++ E VA Sbjct: 61 AQGGYVLADKAAEIKVGTILRVLEGELSVA 90 >gi|194016021|ref|ZP_03054636.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012376|gb|EDW21943.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 145 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSSTYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + + I+ LDV++A E + C H P G C + V++ Sbjct: 61 AKGGYAIMKQKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHDG-CLIEQVMQDVETKMQ 119 Query: 120 DVLTQ 124 + L+Q Sbjct: 120 ETLSQ 124 >gi|163749695|ref|ZP_02156941.1| Rrf2 family protein [Shewanella benthica KT99] gi|161330508|gb|EDQ01466.1| Rrf2 family protein [Shewanella benthica KT99] Length = 167 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 15 MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRHGLVSSVRG 74 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES V C + DC C S+ Sbjct: 75 PGGGYRLGADAVDISVGMVVRAVDESVDVTRC--KGQGDCQNGTRCLTHSLWGDLSKQIS 132 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L+ R Sbjct: 133 DFLNGISLAGLMNKR 147 >gi|167623502|ref|YP_001673796.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167353524|gb|ABZ76137.1| transcriptional regulator, BadM/Rrf2 family [Shewanella halifaxensis HAW-EB4] Length = 153 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES C + +C C S+ N Sbjct: 61 PGGGYRLGTDACDISVGMVVRAVDESVDATRCQG--QGNCQSGTRCLTHSLWGDLSNQIS 118 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L+ R Sbjct: 119 DFLNGISLAGLMHKR 133 >gi|218885727|ref|YP_002435048.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756681|gb|ACL07580.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 189 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ Y R+L+ A+H D P S++AE IS F+ KI++ L AG+V +VR Sbjct: 1 MRISSTVHYASRLLVNLALHCPQDGPLSASELAEHTGISVKFIEKIIRQLRTAGMVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L D +T+ DV++ E C DC C + A A Sbjct: 61 GAAGGHVLTMNPDDVTLGDVLRVVEGGVQPPNCCVG--ADCDDT-PCRCKAAWTSAAKAL 117 Query: 119 FDVLTQYSI 127 + L Q+++ Sbjct: 118 EETLDQFTL 126 >gi|217967934|ref|YP_002353440.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217337033|gb|ACK42826.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum DSM 6724] Length = 144 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++ + +YG+R +++ +YP+ +SQI++ IS FL +++ L +A +VE+ +G Sbjct: 4 VSAKLEYGLRAMIFLG--KNYPHEKLTLSQISQEENISREFLAQLMSELRRANLVESYKG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L +P +IT+ ++ +A E + +C Sbjct: 62 ITGGYTLTKPPHEITLKEIFEALEGPIQIIDC 93 >gi|260753062|ref|YP_003225955.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552425|gb|ACV75371.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 135 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVR 58 MHL+ TDY + VL H ++ + AE + + K++ L A ++ ++R Sbjct: 1 MHLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 G GG L RPA++IT+ DVV+A E ++ C + C CG+ Sbjct: 61 GMGGGFTLARPAEEITLADVVEAIEGPIAMSSCDNKESL-CKFSAECGM 108 >gi|258544534|ref|ZP_05704768.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826] gi|258520216|gb|EEV89075.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826] Length = 155 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +TK ++Y +L + +A+ I+ K+L+ L + GI+E++RG Sbjct: 2 LRITKESEYAFLLLGAILSAEGAARNTATLAKEARIAVPMSGKVLKRLTQQGILESIRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R A+ +T LDVV+A E + EC + + +C L C Sbjct: 62 HGGYQLARAAESVTALDVVEAIEGGPELVEC-TNGETNCALAEHC 105 >gi|322514681|ref|ZP_08067709.1| iron-sulfur cluster assembly transcription regulator IscR [Actinobacillus ureae ATCC 25976] gi|322119379|gb|EFX91488.1| iron-sulfur cluster assembly transcription regulator IscR [Actinobacillus ureae ATCC 25976] Length = 150 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV++VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLTDISERQAISLSYLEQLFAQLRREGIVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG +L + ++I++ ++ A E+ V +C S +C C L L + Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGS--GNCSKNSQCLTHHLWERLEDQIG 118 Query: 117 AFFDVLT 123 F + +T Sbjct: 119 VFLNTIT 125 >gi|315645813|ref|ZP_07898934.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315278574|gb|EFU41888.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 139 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L R IT DV++ E Sbjct: 61 AYGGYILSRDPATITAGDVIRVLE 84 >gi|308174453|ref|YP_003921158.1| transcription repressor [Bacillus amyloliquefaciens DSM 7] gi|307607317|emb|CBI43688.1| transcription repressor [Bacillus amyloliquefaciens DSM 7] gi|328554372|gb|AEB24864.1| transcription repressor [Bacillus amyloliquefaciens TA208] gi|328912776|gb|AEB64372.1| transcription repressor [Bacillus amyloliquefaciens LL3] Length = 138 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L ++IT D+++ E E + Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEE 97 >gi|302873942|ref|YP_003842575.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307689807|ref|ZP_07632253.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302576799|gb|ADL50811.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 167 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y I L+Y + + I +A ISE +L K+ L K+GIV+++ G Sbjct: 1 MKFSVGVEYAIHCLLYMVNSEEGTSVGIRDLATFQGISETYLSKVYAKLSKSGIVKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87 +GG L R A++IT DVV+A E E FF Sbjct: 61 VKGGYALARSAEEITFWDVVEAVEGSEPFF 90 >gi|154148684|ref|YP_001406497.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis ATCC BAA-381] gi|153804693|gb|ABS51700.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis ATCC BAA-381] Length = 137 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + +++ A N P + I+ I + FL KILQ L + GI+++ +G Sbjct: 1 MLFTKASEYALLSMIFIA-RNKEPVGVDAISNELKIPKSFLAKILQDLARDGILQSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGS--CGLTSVLRKAL 115 +GG L + +I++ ++V++ E+ S F EC ++++ CP C + + Sbjct: 60 KGGFLLAKKPLEISLNEIVQSAEKKQNSIF--EC-SNNRASCPSNKGEICEIWHIFSGIQ 116 Query: 116 NAFFDVLTQYSIECLVR 132 N +L +++E ++ Sbjct: 117 NKVDAILDNFTLENFIK 133 >gi|197301334|ref|ZP_03166419.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC 29176] gi|197299652|gb|EDY34167.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC 29176] Length = 147 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+K++ YG+R L+ A+ N ++S IA+ IS +L + L KA IV++++ Sbjct: 1 MKLSKKSRYGLRALIDLAV-NSRTEQVSLGSIAQRNDISAQYLEHVFSALRKAHIVKSIK 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAE 90 G +GG L + + IT+ ++V+A E S+++ + Sbjct: 60 GSQGGYFLEKAPELITVAEIVEALEGSYYLED 91 >gi|251798602|ref|YP_003013333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247546228|gb|ACT03247.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 144 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L I D N IA + + + + ++L L KAG+V+ VR Sbjct: 1 MKISSRFSIAVHILSLLEISKDAHNTSEWIAGSVNTNPVIIRRLLGQLKKAGLVQ-VRAG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LD+ +A + E + DCP+ S L VL+K+ + Sbjct: 60 TGGSYLTKEMSEITLLDIFRAVDVVEEGQLFHIHEGPNPDCPVGASIQVVLELVLKKSQD 119 Query: 117 AFFDVLTQYSIECLVRN 133 A VL Q ++E LV + Sbjct: 120 AMESVLAQITLEELVAD 136 >gi|298248163|ref|ZP_06971968.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297550822|gb|EFH84688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 135 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ T+Y + +MY A+ + ++AE +S +L KIL LVKAGI+E+ G Sbjct: 1 MKYSQATNYALHTMMYFVALPVGSTIGVQRLAELQKLSPTYLSKILTKLVKAGIIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL R ++ L+V+ A E Sbjct: 61 VNGGYRLTRNKADLSFLEVIHAIE 84 >gi|260464287|ref|ZP_05812479.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259029911|gb|EEW31195.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 172 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 11/133 (8%) Query: 10 GIRVLMYCA-----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++CA + + + +AE+ +S +L K L L A I+E+V G GG Sbjct: 6 GVEAAIHCAATLASVEGNSTMPGAALAESFGLSPSYLLKHLNMLTAARILESVPGPAGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAECF-----ASHKIDC-PLVGSCGLTSVLRKALNAF 118 RL +PA++IT+LD+V A E C K+D V CG+ + + KA A+ Sbjct: 66 RLAKPAERITLLDIVLAVEGREPAFRCGEIRRNGPVKLDASAYVKPCGINAAMLKAERAY 125 Query: 119 FDVLTQYSIECLV 131 L + + +V Sbjct: 126 RAALAETRLSDIV 138 >gi|258405006|ref|YP_003197748.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] gi|257797233|gb|ACV68170.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] Length = 163 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ YGIR+++ A + P + +A+ IS +L K+ + L ++G + + G Sbjct: 1 MRLSTRSRYGIRLMLDIAQQGQHGPVALRDVADRQDISLKYLEKLSRRLRESGFLMSRLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 +GG L RPA +ITI +++++ E + +C+ K C V C + VL Sbjct: 61 AKGGYVLGRPAAEITIKELIESLEGHVGLVQCWLEEKA-CSRVDQCLAYSLWARINEVLA 119 Query: 113 KALNAF 118 + LNA Sbjct: 120 RELNAI 125 >gi|218665081|ref|YP_002427593.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517294|gb|ACK77880.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 175 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y ++ L+Y A + P I++ + +L KILQ L K G++++ +G Sbjct: 14 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 73 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L A Q+ ILD+++ E F C K C +C + + + Sbjct: 74 RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 132 Query: 120 DVLTQYSIECLVR 132 D+L + +I + Sbjct: 133 DLLGRQTIASMAE 145 >gi|53803005|ref|YP_115276.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] gi|53756766|gb|AAU91057.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] Length = 162 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 14/152 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A H++ P ++ IA+ IS +L ++ L +AG+VE VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAYHSETNPVTLTDIAKRQNISLSYLEQLFARLRRAGMVEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 GG +L R A +I I +++ A +E C K +C C GL+ +R Sbjct: 61 PGGGYQLSRCASEINIAEIIAAVDEPIDSTRCGG--KANCQNNQPCLTHDLWMGLSEQIR 118 Query: 113 KALN--AFFDVLTQYSIECLV--RNRSSIKKI 140 + L + +VLT+ + + ++R S +++ Sbjct: 119 EYLASISLGEVLTRQPVRQVAERQDRQSQRRV 150 >gi|152990870|ref|YP_001356592.1| BadM/Rrf2 family transcriptional regulator [Nitratiruptor sp. SB155-2] gi|151422731|dbj|BAF70235.1| transcriptional regulator, BadM/Rrf2 family [Nitratiruptor sp. SB155-2] Length = 133 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ T+Y + L+ A + P ++ IS FL KILQ L K I+++ +G Sbjct: 1 MLFTRATEYALLALVVIA-KEERPLGTDYLSRRLNISRSFLAKILQALAKQDILKSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG +L RPA+Q++I ++ A E + + +C +S + CP C L L K Sbjct: 60 SGGFQLARPANQLSIKEISTAAEGKGVNIFDC-SSDQACCPSNKGDFCTLWPFLNKLQTR 118 Query: 118 FFDVLTQYSIECLVR 132 D L + +++ L+ Sbjct: 119 VDDFLEELTLQDLME 133 >gi|169829936|ref|YP_001700094.1| putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168994424|gb|ACA41964.1| Putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 138 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M +K T+Y + +++ + P + +A+ +S +L KIL LVKAG++E+ Sbjct: 2 MKYSKATNYALHTMVFLT---NMPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIES 58 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G GG R+ + +I+ LDV+ A E + C + H+ D C + V+ A N Sbjct: 59 NPGVNGGYRISKRPQEISFLDVIYAIEGQTTLFSCSSDHE-DSFHNEGCLIEQVMVDAEN 117 Query: 117 AFFDVLTQ 124 + L++ Sbjct: 118 NMKEELSK 125 >gi|121609329|ref|YP_997136.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121553969|gb|ABM58118.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter eiseniae EF01-2] Length = 179 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 7/119 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N P ++ I++ IS +L ++ L + GIVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRNGIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R AD T+ D++ + +E +C K +C +G G +T L ALN Sbjct: 61 PGGGYTLARRADDTTVADIIVSVDEPMDATQC--GGKENC--LGEAGRCMTHELWTALN 115 >gi|91792814|ref|YP_562465.1| iron-sulfur cluster assembly transcription factor IscR [Shewanella denitrificans OS217] gi|91714816|gb|ABE54742.1| transcriptional regulator, BadM/Rrf2 family [Shewanella denitrificans OS217] Length = 153 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSTTGPVPLADISERQGISLSYLEQLFAKLRKEGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A I+I VV A +ES V C K +C C S+ Sbjct: 61 PGGGYHLGLEAKDISISMVVHAVDESVDVTRCQG--KGNCQSGTRCLTHSLWGDLSKQIA 118 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L++ R Sbjct: 119 DFLDGISLAGLMQKR 133 >gi|260881734|ref|ZP_05405118.2| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella multacida DSM 20544] gi|260848283|gb|EEX68290.1| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella multacida DSM 20544] Length = 154 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + L A+ + + + IA + +SE +L +++ PL +AGIV++VRG Sbjct: 5 MKISTKGRYSVTALYELALRYGEGAVSLKSIATSQGLSENYLEQLMAPLRRAGIVKSVRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115 +GG L R +ITI +++ E + +C S + C +C V K Sbjct: 65 AQGGYMLARDPKEITIGEIITTVEGPIALVDCLLTSAESAEQPCDRACACVTRGVWEKVC 124 Query: 116 NAFFDVLTQYSI 127 ++ +VL ++ Sbjct: 125 DSISNVLNHITL 136 >gi|170726128|ref|YP_001760154.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169811475|gb|ACA86059.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC 51908] Length = 153 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTAGPVPLADISERQGISLSYLEQLFAKLRKQGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL A +I++ VV+A +ES C Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRC 92 >gi|198284912|ref|YP_002221233.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249433|gb|ACH85026.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 162 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y ++ L+Y A + P I++ + +L KILQ L K G++++ +G Sbjct: 1 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 R GG L A Q+ ILD+++ E F C Sbjct: 61 RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGC 92 >gi|126651583|ref|ZP_01723786.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905] gi|126591532|gb|EAZ85638.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905] Length = 166 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M + +Y + L+Y D P I ++E +SE +L K+L L KAGIV + Sbjct: 1 MKYSVMVEYALHSLVYLI---DVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDC 99 V G +GG +L + + I+ DVVKA E + C FA+ +C Sbjct: 58 VSGVKGGYKLSKKPEDISFWDVVKAVEGESPIFHCKNIKANFANQTENC 106 >gi|302875241|ref|YP_003843874.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307687906|ref|ZP_07630352.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302578098|gb|ADL52110.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 132 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ +DY +R ++ A YPN+I IAE+C I FL K+L+ L KA +V + R Sbjct: 1 MKITQESDYALRAVVNIA--EKYPNKIEAKVIAESCDIPLRFLLKLLRKLTKAHVVRSYR 58 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNA 117 G GG L + IT+ V++A E + +C ++ G C ++ LRK + Sbjct: 59 GINGGYALATNPEDITMASVIEAIEGPIILNKCIQDKELCSNNRKGKCNISMELRKIQES 118 Query: 118 FFDVLTQYSIECLV 131 L I L+ Sbjct: 119 LLKELRSRKISDLL 132 >gi|72161204|ref|YP_288861.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX] gi|71914936|gb|AAZ54838.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX] Length = 150 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 44/83 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A P Q+A A I FL IL L +AG+V + RG Sbjct: 1 MRLSARVDYALRAAAELAAVGGGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA +I++ D+++A + Sbjct: 61 VGGYWLARPASEISLADIIRAVD 83 >gi|330836543|ref|YP_004411184.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] gi|329748446|gb|AEC01802.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] Length = 144 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ RT YG+R+L+ A + P ++ A I +L ++ L +G + +V+G Sbjct: 1 MKISTRTHYGVRLLVDLASQDMADPVPLATTAGRQDIPLRYLEQVADILRWSGFLLSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA I + DV++A E + + SH+ + L C +V K +A Sbjct: 61 ASGGYRLARPAQDILLGDVLRALEGDLNIVDPLQSHEAENRL-QQCLRLTVYNKLEHAIA 119 Query: 120 DVLTQYSIECLV 131 +V+ S+ L+ Sbjct: 120 NVVDTISLASLI 131 >gi|322392211|ref|ZP_08065672.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC 700780] gi|321144746|gb|EFX40146.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC 700780] Length = 158 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MHL+ + I VL+ +Y N I ++E +S+ +L KI++ L G+V++VR Sbjct: 1 MHLSSGWEQSIYVLLMLDQLPEGEYINSIF-LSERLGVSDSYLKKIIKLLDNEGLVKSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G+ GG+ L RP QI+ DV A E Sbjct: 60 GKNGGIALSRPLSQISFYDVFVAIE 84 >gi|229543731|ref|ZP_04432791.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] gi|229328151|gb|EEN93826.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA++ +SE +L +++ PL AG V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKRYGMGPTSLKSIAQSQNLSEHYLEQLISPLRNAGFVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R QIT DV++ E E + P+ + + +A Sbjct: 61 AYGGYVLTRKPSQITAGDVIRVLEGPITPVEGIEDEE---PVKRQLWI-----RIRDAVK 112 Query: 120 DVLTQYSIECLVRNRSSIK 138 DVL +IE L + R + Sbjct: 113 DVLDSTTIEDLAKYREDTE 131 >gi|226311480|ref|YP_002771374.1| transcriptional regulator of cysteine metabolism [Brevibacillus brevis NBRC 100599] gi|226094428|dbj|BAH42870.1| transcriptional regulator of cysteine metabolism [Brevibacillus brevis NBRC 100599] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELANRCGEGPTSLRSIAQKHDLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + D+I+ DV++ E Sbjct: 61 AYGGYVLAKQPDEISAGDVIRVLE 84 >gi|157737595|ref|YP_001490278.1| hypothetical protein Abu_1353 [Arcobacter butzleri RM4018] gi|157699449|gb|ABV67609.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 135 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 49/87 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ + Y I+VL+Y A N + ++++ I +L K++ L K ++ ++GR Sbjct: 1 MILSTTSQYAIKVLIYMAEDNSKLYSVKELSKILEIPYKYLSKVMTNLSKKELILAIQGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87 GG +L +P ++I + D++ A E+ F Sbjct: 61 YGGFKLSKPKEEIKLKDILVALEDESF 87 >gi|330717994|ref|ZP_08312594.1| transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 153 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ + + VL+ A+ D P + ++ +SE + K ++ L AGIV + Sbjct: 1 MKMSQAVEQSLVVLIMLAVQQDNAPVKSHILSSRLEVSESYFKKTMRKLRIAGIVTAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASH--KIDCPLV--GSCGLTSVLRK 113 + GG +L RP QIT+LDV +A E+SF + A K LV G+ + +++ Sbjct: 61 KEGGFKLARPLHQITLLDVYEAIEGEDSFIHSTQLADRIFKGSDELVKSGTKEVLAIIYD 120 Query: 114 ALNAFFDVLTQYSI 127 A AF L Y+I Sbjct: 121 AEQAFKQKLADYTI 134 >gi|288549656|ref|ZP_05967727.2| transcriptional regulator, BadM/Rrf2 family [Enterobacter cancerogenus ATCC 35316] gi|288317777|gb|EFC56715.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cancerogenus ATCC 35316] Length = 174 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGRRGGV 64 +YGI LM C + R + E + + +L KI L +AG+V + G+ GG Sbjct: 15 EYGIHSLM-CMVDAKGCEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVSSTEGKGGGF 73 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHK-----IDCPLV----GSCGLTSVLRKAL 115 +L RPA+ I++LDV A + + EC + + P G CG+ SV+ A Sbjct: 74 KLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMDSAQ 133 Query: 116 NAFFDVLTQYSIECLVRN 133 + L++++I L R Sbjct: 134 QRMEEELSRHTILDLARK 151 >gi|326799915|ref|YP_004317734.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sphingobacterium sp. 21] gi|326550679|gb|ADZ79064.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp. 21] Length = 145 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R + Y A H I +IA+A E FL KILQ L K G++++V+G Sbjct: 4 FSKTAEYAMRAVFYIAQRSHEGQRTGIKEIADAVNSPEAFLAKILQKLSKVGLIQSVKGP 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCPLVG 103 GG + + D+V A E C + S + CPL G Sbjct: 64 NGGFYIDTSGFSRPLADIVIAVEGDTIFKGCGMGLSYCSEEYPCPLHG 111 >gi|281418212|ref|ZP_06249232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|281409614|gb|EFB39872.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|316941312|gb|ADU75346.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 148 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + +Y IS I+E IS++FL ++ L KA IV + +G +GG +L R QIT+LDV+ Sbjct: 23 NGEYITVIS-ISEKLGISKIFLEQVFSSLKKAKIVSSTKGAQGGYQLTRTPSQITVLDVL 81 Query: 80 KATEESFF 87 + E S F Sbjct: 82 LSVEVSLF 89 >gi|15896762|ref|NP_350111.1| hypothetical protein CA_C3525 [Clostridium acetobutylicum ATCC 824] gi|15026619|gb|AAK81451.1|AE007849_5 Uncharacterized conserved protein, YjeB/RRF2 family [Clostridium acetobutylicum ATCC 824] gi|325510933|gb|ADZ22569.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 168 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + + I +A ISE +L K+ L K+GI++++ G Sbjct: 1 MKFSVGVEYALHCLLYMVNAEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87 +GG L R A++IT DVV+A E ESFF Sbjct: 61 VKGGYALARSAEEITFWDVVEALEGSESFF 90 >gi|319649301|ref|ZP_08003459.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317398935|gb|EFV79615.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 138 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y + + + Q+A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMVYLTLTPKGKSVGVEQLAKIQNLSPTYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + + + LDV+ A E + C H D C + V+ +A Sbjct: 61 VKGGYSIVSHSRKTSFLDVIHAIEGHTTLFHCSLEH--DDLQNEDCLIEKVMFEAEKKMK 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L I + + S KK Sbjct: 119 DELNTKYISDIAKEIDSTKK 138 >gi|255020290|ref|ZP_05292358.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756] gi|254970210|gb|EET27704.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756] Length = 162 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y ++ L+Y A + P I++ + +L KILQ L K G++++ +G Sbjct: 1 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLRVPAQYLAKILQVLAKRGVLDSYKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 R GG L A+Q+ IL+VV+ E + F C Sbjct: 61 RGGGFVLRPGAEQMNILEVVEMVEGAPFGQGC 92 >gi|255658792|ref|ZP_05404201.1| Rrf2 family protein [Mitsuokella multacida DSM 20544] gi|260849190|gb|EEX69197.1| Rrf2 family protein [Mitsuokella multacida DSM 20544] Length = 148 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 10/133 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ + Y A + P I I+E IS+++L ++ L +A +V +++ Sbjct: 1 MKISAKGRYGLAAMTYLARNYAAGTPITIVSISEKLGISKIYLEQVFSLLKRARLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSV---LR 112 G +GG +L RP +IT D++ + E S A+ + L + SC T + ++ Sbjct: 61 GSQGGYQLARPPREITPYDILSSIELSLMEKTAPAAQEKMPELDRALASCVFTPLDEAIQ 120 Query: 113 KALNAFF--DVLT 123 KAL+A D+LT Sbjct: 121 KALSAISLDDILT 133 >gi|329848850|ref|ZP_08263878.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] gi|328843913|gb|EGF93482.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] Length = 145 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + Y ++ L++ A QIAEA I + FL ILQ L + GI+++ RG G Sbjct: 2 LSMKAKYALKALIHMAQSTSPTLPSKQIAEAEDIPQKFLDNILQELRQNGIIDSKRGIFG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHK-IDCPLVGSCGLTSVLRKALNAF 118 G L RPA I + DV++ + C A K DC +C L ++R +A Sbjct: 62 GYFLARPATDIYLGDVIRVIDGPLAPIRCASLTAYQKCDDCRDETTCHLRRLMRDVRDAM 121 Query: 119 FDVLTQYSIECLVRNRSSIK 138 +L ++ LV S I+ Sbjct: 122 SAILDGRCLQDLVTAPSLIE 141 >gi|224367513|ref|YP_002601676.1| hypothetical protein HRM2_03930 [Desulfobacterium autotrophicum HRM2] gi|223690229|gb|ACN13512.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 162 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 12/121 (9%) Query: 22 DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 D+P I QIAE I +L K+ L KAGIV + G +GG L + A+ I+ D Sbjct: 19 DFPEHKTIGIKQIAELNKIKVTYLSKVFTKLRKAGIVRSTPGVKGGYELAKQAENISFWD 78 Query: 78 VVKATEESFFVAECFASHK----IDCPLVGS----CGLTSVLRKALNAFFDVLTQYSIEC 129 +++A E + +C K +D P V + C + V+++A F D L S+ Sbjct: 79 IIEAIEGPTYFFQCAEIRKKNIFVDDPSVFTAECPCLIKVVIQEAEELFRDRLRNRSLRW 138 Query: 130 L 130 L Sbjct: 139 L 139 >gi|296112834|ref|YP_003626772.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis RH4] gi|295920528|gb|ADG60879.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis RH4] gi|326561076|gb|EGE11441.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 7169] gi|326561502|gb|EGE11846.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 46P47B1] gi|326565370|gb|EGE15548.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 12P80B1] gi|326566701|gb|EGE16840.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 103P14B1] gi|326567535|gb|EGE17650.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis BC1] gi|326569382|gb|EGE19442.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis BC8] gi|326571418|gb|EGE21433.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis BC7] gi|326575299|gb|EGE25227.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis CO72] gi|326576615|gb|EGE26522.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 101P30B1] gi|326577518|gb|EGE27398.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis O35E] Length = 168 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ +S IA+ IS +L ++ L K G+V + Sbjct: 1 MRLTTRGRYAVTALLDLAVQESRHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 RG GG L +P + I I+ ++ A +ES +C Sbjct: 61 RGALGGYHLAKPLEDIDIMSIITAVDESINATQC 94 >gi|254439600|ref|ZP_05053094.1| Transcriptional regulator superfamily [Octadecabacter antarcticus 307] gi|198255046|gb|EDY79360.1| Transcriptional regulator superfamily [Octadecabacter antarcticus 307] Length = 153 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + L A+ ++P I +A+ IS +L ++ L AG+V +VRG Sbjct: 1 MKLTTKGRYAMVALTDLALEATEHPVSIRALAKRQDISVTYLEQLFVKLRGAGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L RP I I+DV+KA +ES Sbjct: 61 PGGGYSLARPPSDIRIVDVLKAVDES 86 >gi|332141977|ref|YP_004427715.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551999|gb|AEA98717.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 161 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 GG L R A +I I +V++A +ES C + DC C LT L + L+ Sbjct: 61 PGGGYLLGREASEIAIGEVIRAVDESIDATRCQG--QADCQGGDRC-LTHSLWQDLSDRI 117 Query: 117 -AFFDVLT 123 AF + +T Sbjct: 118 AAFLNSIT 125 >gi|32034036|ref|ZP_00134280.1| COG1959: Predicted transcriptional regulator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208408|ref|YP_001053633.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae L20] gi|165976351|ref|YP_001651944.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150259|ref|YP_001968784.1| HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251397|ref|ZP_07337574.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252975|ref|ZP_07339130.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245844|ref|ZP_07527929.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247920|ref|ZP_07529954.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250175|ref|ZP_07532134.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252558|ref|ZP_07534453.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254817|ref|ZP_07536643.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259259|ref|ZP_07540988.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263598|ref|ZP_07545212.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097200|gb|ABN74028.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876452|gb|ABY69500.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915390|gb|ACE61642.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648166|gb|EFL78367.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649751|gb|EFL79930.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853204|gb|EFM85424.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855570|gb|EFM87739.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857806|gb|EFM89903.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859963|gb|EFM91981.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862188|gb|EFM94156.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866626|gb|EFM98485.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871061|gb|EFN02791.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 150 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG +L + ++I++ ++ A E+ V +C S +C C L L + + Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGS--GNCSKNSQCLTHHLWERLEEQIG 118 Query: 117 AFFDVLT 123 F + +T Sbjct: 119 VFLNTIT 125 >gi|256026588|ref|ZP_05440422.1| hypothetical protein PrD11_01075 [Fusobacterium sp. D11] gi|260494648|ref|ZP_05814778.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|289764592|ref|ZP_06523970.1| transcriptional regulator [Fusobacterium sp. D11] gi|260197810|gb|EEW95327.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|289716147|gb|EFD80159.1| transcriptional regulator [Fusobacterium sp. D11] Length = 141 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + +RI S+IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQD--KDRIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114 +G GG +L R IT+ D V+ E+ + + C A SC + L K Sbjct: 59 KGANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVAGQ-------TSCSIIFEALEKV 111 Query: 115 LNAFFDVLTQYSIECL 130 N F L + + + L Sbjct: 112 ENNFLKNLEKVNFQEL 127 >gi|169828688|ref|YP_001698846.1| hypothetical protein Bsph_3207 [Lysinibacillus sphaericus C3-41] gi|168993176|gb|ACA40716.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 161 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Query: 8 DYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +Y + L+Y D P I ++E +SE +L K+L L KAGIV +V G +GG Sbjct: 3 EYALHSLVYLI---DVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSGVKGG 59 Query: 64 VRLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DVVKA E + +C Sbjct: 60 YRLSKRPEDISFWDVVKAVEGESPIFQC 87 >gi|103486976|ref|YP_616537.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977053|gb|ABF53204.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis alaskensis RB2256] Length = 147 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR + A H +++ IAEA I FL IL + + G++ + RGR Sbjct: 2 LSQKTRYTIRAFQHLADHWGRGQVQLADIAEAQNIPPKFLTVILSEMAREGLLISQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG +L P I+ D+V+ T S + C A H +C C L S++ K + Sbjct: 62 GGYQLALPPVDISYGDLVRLTRGSLALVPCAARNAHEHCKNCLPEAECRLRSLMLKVRDE 121 Query: 118 FFDVLTQYSI 127 +L + ++ Sbjct: 122 TASILDRITL 131 >gi|225568451|ref|ZP_03777476.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM 15053] gi|225162679|gb|EEG75298.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM 15053] Length = 143 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + V+ A+H+D + + IAE +SE +L +I++ L A I+++VR Sbjct: 1 MKISTKGIYALEVVADLALHSDAAHLESLKNIAERRKLSEKYLERIVKALKDAHIIKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115 G GG + + Q+T+ +V+KA E +C IDC SC Sbjct: 61 GAYGGYCMAKEPQQLTVREVLKAVEGELAPVDCLTQESSCGIDCR---SCPTRDTWAALW 117 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 V + ++ +VR I K Sbjct: 118 QTIAGVADEVTVGDIVRAAEKIDK 141 >gi|157376007|ref|YP_001474607.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318381|gb|ABV37479.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis HAW-EB3] Length = 153 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL A +I++ VV+A +ES C Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRC 92 >gi|309774620|ref|ZP_07669645.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917651|gb|EFP63366.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 134 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL TDY +R+++Y A +++E I + ++ K+ L +A I+E V G Sbjct: 1 MHLKISTDYAVRIVLYLAKKRQLVQS-KELSEQLHIPQGYVLKVASILKEAQILEAVTGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG RL + I I DV++A E + + C Sbjct: 60 DGGFRLVKHPRDIPIYDVIRAMETTMQINRCL 91 >gi|166031726|ref|ZP_02234555.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC 27755] gi|166028179|gb|EDR46936.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC 27755] Length = 155 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ + YG+R ++ A P I IA +SE +L ++ L KAG+V+++RG Sbjct: 4 LKLSTKGKYGLRAIIDLARFSEKEPVSIGCIATRQKLSERYLEQLFALLKKAGLVKSIRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L R A +I++ DV++A E + C A + + C C V +K ++ Sbjct: 64 ASGGYVLARDASEISVGDVLRALEGNLEPVRCAAFYSEEGCMASDECVTKYVWQKINDSI 123 Query: 119 FDVLTQYSIECLVRNRSSI 137 + + ++ LV+ + Sbjct: 124 NKTVNEIKLDELVKESKEL 142 >gi|306820338|ref|ZP_07453977.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551667|gb|EFM39619.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 142 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y ++ + AI + + P +S I+E +SEL+L +I L K IV+++RG Sbjct: 1 MIISTKGRYALKAVFELAIADKNTPLPLSMISEKSGLSELYLEQIFSVLKKNNIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I++ +V+K E A+C C ++ C + A Sbjct: 61 AQGGYFLTKDTKDISVGEVIKPLEGDLSPAKCLEEDGY-CDMLDRCPTYMIWDNIKKAID 119 Query: 120 DVLTQYSIECLV 131 DV+ ++ +V Sbjct: 120 DVVDNTTLADMV 131 >gi|37520938|ref|NP_924315.1| hypothetical protein glr1369 [Gloeobacter violaceus PCC 7421] gi|35211933|dbj|BAC89310.1| glr1369 [Gloeobacter violaceus PCC 7421] Length = 159 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 75/146 (51%), Gaps = 10/146 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +T+++DYGI ++ + A H + ++A + + KIL+ L + G++ + RG Sbjct: 2 IRITRQSDYGIVLVSHLAAHPERSFGAPELAAQVNLPLPIVRKILKLLAREGLLVSQRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCG-LTSVLR 112 +GG L P I++ DVV A E + EC +H+ CPL+ + +V++ Sbjct: 62 KGGYCLALPPAVISVADVVTALEGPIALTECIEDAPGGGCAHEAVCPLMPKWQRINAVIQ 121 Query: 113 KALN--AFFDVLTQYSIECLVRNRSS 136 +AL+ + +++ + E V + ++ Sbjct: 122 QALSGISLSELIAPWPQELPVLSHAA 147 >gi|332971653|gb|EGK10602.1| iron-sulfur cluster assembly transcription regulator IscR [Psychrobacter sp. 1501(2011)] Length = 175 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ AI + + +S IA+ IS +L ++ L KAG+V + Sbjct: 1 MRLTTRGRYAVTALLDLAIQDGDSSSAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEES 85 RG GG L +P ++I ++ ++ A +ES Sbjct: 61 RGASGGYHLAKPLNEIDVMTIITAVDES 88 >gi|295982422|pdb|3LWF|A Chain A, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution gi|295982423|pdb|3LWF|B Chain B, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution gi|295982424|pdb|3LWF|C Chain C, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution gi|295982425|pdb|3LWF|D Chain D, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution Length = 159 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAH 81 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L ++IT D+++ E + E + + + NA DV Sbjct: 82 GGYVLNGDPEKITAGDIIRTLEGPIVLVESXEDEE--------AAQRELWTRXRNAVRDV 133 Query: 122 LTQYSIECLVRNRSS 136 L Q ++ L+++ + Sbjct: 134 LDQTTLSDLLKHSTD 148 >gi|144899516|emb|CAM76380.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 154 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ + H+ P ++ IAE IS +L ++ L K G+V++VRG Sbjct: 1 MKLSTKGRYAVMAMVDLSSHSQGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L RPA Q+ I D++ A +E C C Sbjct: 61 PGGGYLLSRPAVQMRISDIILAVDEPIQTTRCSPGSPAGC 100 >gi|15643333|ref|NP_228377.1| hypothetical protein TM0567 [Thermotoga maritima MSB8] gi|170288170|ref|YP_001738408.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2] gi|281411786|ref|YP_003345865.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|4981083|gb|AAD35652.1|AE001731_9 conserved hypothetical protein [Thermotoga maritima MSB8] gi|170175673|gb|ACB08725.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2] gi|281372889|gb|ADA66451.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga naphthophila RKU-10] Length = 137 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 16/140 (11%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRIS--QIAEAC--CISELFLFKILQPLVKAGIVETVRG 59 T R++Y +R+++ A +Y N +S +I E + F KIL L KAG+V+T RG Sbjct: 3 TMRSEYALRLMIVMA--KEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116 + GG L RP +I + ++V F+ + + D CP C + ++ ++ N Sbjct: 61 KSGGYMLSRPPKEIKVSEIV-------FLLDRKSKVFFDMPGCPDELDCVIRALWKRVEN 113 Query: 117 AFFDVLTQYSIECLVRNRSS 136 +L+ ++E LVR + Sbjct: 114 EIEKILSGVTLEDLVREQEE 133 >gi|152981590|ref|YP_001352941.1| iron-sulfur cluster assembly transcription factor [Janthinobacterium sp. Marseille] gi|151281667|gb|ABR90077.1| iron-sulfur cluster assembly transcription factor [Janthinobacterium sp. Marseille] Length = 157 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A+ +T+ D++ A +E +C P G +T L LNA Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120 Query: 118 -FFDVLTQYSIECLV 131 D L S++ LV Sbjct: 121 KMVDYLDSVSLKDLV 135 >gi|307297855|ref|ZP_07577661.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales bacterium mesG1.Ag.4.2] gi|306917115|gb|EFN47497.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales bacterium mesG1.Ag.4.2] Length = 154 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETV 57 M T ++ Y +R L A + +++S +I + I FL KI L +AGI++ V Sbjct: 1 MGFTLKSSYALRALYKMAKSTREGKDKLSLVEIVQGNEIPRDFLEKIFGELRQAGIIKAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG L RPA++I + DV+ ++ C + C +C + V K NA Sbjct: 61 RGRYGGYCLARPANEILLRDVILKLDKPMNSYPCLQQNG-KCLEDPNCTVKYVWFKLYNA 119 Query: 118 FFDVLTQYSIECLV 131 L ++E L+ Sbjct: 120 MMRELGSMTLENLL 133 >gi|299538065|ref|ZP_07051350.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726267|gb|EFI66857.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + + + +AE +S +L KIL LVKAG++E+ G Sbjct: 2 MKYSKATNYALHTMVFLTRNPKGKSMSVESLAEIQKLSPTYLSKILTKLVKAGLIESNPG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R+ + +I+ LDV+ A E + C + H D C + V+ A N Sbjct: 62 VNGGYRISKRPQEISFLDVIYAIEGQTSLFSCSSEHN-DSFHHQGCLIEQVMVDAENNMK 120 Query: 120 DVLTQ 124 + L + Sbjct: 121 EELNK 125 >gi|253999837|ref|YP_003051900.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986516|gb|ACT51373.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. SIP3-4] Length = 154 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TD G+R LMY + H + I+++A+ + L K++ L K G ++ R Sbjct: 5 MQLTKFTDLGLRALMYVSQSTHTRMVS-ITELAQQLNVPRNHLIKVVTFLNKTGWIQATR 63 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG+RL +++ VV+ E + +C + CPL GSCGL VL ++L+ F Sbjct: 64 GPGGGLRLGMDPASLSLGLVVRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVF 120 Query: 119 FDVLTQYSIECLVRNRSS 136 + L Y++ + +S Sbjct: 121 YRHLDTYTLADVTPKHTS 138 >gi|218672764|ref|ZP_03522433.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 166 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 38/56 (67%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + +AE +S +L K LQ L AGI++TV G RGG RL +P ++I++LD++ A E Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYRLAKPPEEISLLDILLAVE 84 >gi|291532767|emb|CBL05880.1| transcriptional regulator, BadM/Rrf2 family [Megamonas hypermegale ART12/1] Length = 156 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ ++N P + IA IS ++ +I+ L+KA +V++VRG Sbjct: 1 MKVSTKGRYALRTMIDLTVNNTGNPIPLKDIATRQNISLKYMEQIISLLIKAKLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116 GG L + + Q T D+++A E C +C C + L K +N Sbjct: 61 NNGGYLLAKSSMQYTAGDILRAAEGDMAPIACIEKDHCNCNRADYCSVLPFWLGLNKVIN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 GYLDSVT 127 >gi|148653426|ref|YP_001280519.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572510|gb|ABQ94569.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp. PRwf-1] Length = 173 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ AI + D N +S IA+ IS +L ++ L KAG+V + Sbjct: 1 MRLTTRGRYAVTALLDLAIQDGDSTNAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEES 85 RG GG L +P I ++ ++ A +ES Sbjct: 61 RGASGGYHLAKPLADIDVMTIITAVDES 88 >gi|308187781|ref|YP_003931912.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] gi|308058291|gb|ADO10463.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] Length = 165 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + +D I++ +V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKASDTISVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117 Query: 119 FDVLTQYSIECLVRNR 134 D L ++ LV N+ Sbjct: 118 SDFLNNITLAELVNNQ 133 >gi|160943772|ref|ZP_02091003.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii M21/2] gi|158444946|gb|EDP21949.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii M21/2] Length = 189 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 33 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 92 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG RL + T ++++A E S C S +CP+ C + L + +N Sbjct: 93 SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 152 Query: 117 AFFDVLT 123 + D +T Sbjct: 153 QYIDSVT 159 >gi|158424803|ref|YP_001526095.1| hypothetical protein AZC_3179 [Azorhizobium caulinodans ORS 571] gi|158331692|dbj|BAF89177.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 148 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ ++ A + N++++IAEA I + FL IL L AG + + +G+ Sbjct: 2 LTKKGKYGLKAAVHLARLGPGESNQVAEIAEANQIPKKFLDVILGELRNAGFLSSKKGKT 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG +L + + I + D+++A + C + + DC V C + ++ K +A Sbjct: 62 GGYKLAKLPEDIIVGDLIRALDGPLAPIPCASRNAFVPCDDCD-VEHCEVRRLMVKVRDA 120 Query: 118 FFDVLTQYSI 127 VL Y++ Sbjct: 121 MGTVLDTYTL 130 >gi|149177719|ref|ZP_01856319.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797] gi|148843369|gb|EDL57732.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797] Length = 157 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +Y +R +++ A P QIA+A + + +L K+LQ L ++ +V + RG GG Sbjct: 3 SQTVEYALRAIVHLADQAPNPCTTEQIAKATKVPQAYLSKVLQSLRQSSVVHSQRGIGGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAEC---FASHKID-CPLVGSCGLTSVLRKALNAFF 119 + L + +++++L+VV A + + C H + CPL L +R+ AF Sbjct: 63 ISLVKTPEELSLLEVVNAVDPICRIKTCPLGLKGHGANLCPLHRK--LDDAMRETETAFA 120 Query: 120 DV 121 + Sbjct: 121 ET 122 >gi|145299544|ref|YP_001142385.1| ISC operon transcriptional regulator IscR [Aeromonas salmonicida subsp. salmonicida A449] gi|142852316|gb|ABO90637.1| isc operon transcriptional regulator IscR [Aeromonas salmonicida subsp. salmonicida A449] Length = 167 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG RL D I++ V+ A +ES +C Sbjct: 61 PGGGYRLGLTPDAISVGQVITAVDESVDATKCLG 94 >gi|242278840|ref|YP_002990969.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121734|gb|ACS79430.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio salexigens DSM 2638] Length = 143 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R+ YG R+L+ A+H++ P++ S E IS +L KIL+ L ++G ++ Sbjct: 1 MKLTTRSRYGARLLLDIALHSENGPVPSKDSARREN--ISLKYLEKILKILKESGYIKGK 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L ++I++ + +A E + +C C C S+ A A Sbjct: 59 RGPNGGNVLTMAPEEISLGKLTEALEGEDKILDCDGDMTT-CTRAAVCLRRSIWDDANQA 117 Query: 118 FFDVLTQYSIECLVRN 133 + +L Y++ L+++ Sbjct: 118 MYKMLDSYTLADLIKD 133 >gi|298492262|ref|YP_003722439.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708] gi|298234180|gb|ADI65316.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708] Length = 145 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ ++ Y I L+ A H + P +I QIA I + +L ++L L + GIV++ R Sbjct: 1 MELSCKSQYAILALLEMATHYESGEPMQIRQIAAQQDIPDRYLEQLLATLRRGGIVKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R +I++ ++++ E + V S + + ++A A Sbjct: 61 GSKGGYLLAREPWKISVFEILECLEGLDIKP---GEDDTNSKSVDSSIVDEIWQEARQAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 VL ++S++ L + R S +++ Sbjct: 118 NAVLQKHSLQALCQERDSRRQL 139 >gi|296447558|ref|ZP_06889480.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296254946|gb|EFH02051.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 153 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 11/133 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 LTK+ YG++ ++Y A P R ++ IA A I + FL IL L AG V + +G Sbjct: 2 LTKKAKYGLKAMVYLAGFE--PGRTALVADIATANQIPKKFLDAILGELRNAGFVHSKKG 59 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKA 114 + GG L RP + I + V++ + +C AS + DC C + V+ +A Sbjct: 60 KGGGYTLARPPEDIRVGAVIRVLDGPLAPIQC-ASRTVYRRCDDCENEALCTVRLVMVEA 118 Query: 115 LNAFFDVLTQYSI 127 +A +VL ++ Sbjct: 119 RDAIANVLDNRTL 131 >gi|134095421|ref|YP_001100496.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Herminiimonas arsenicoxydans] gi|133739324|emb|CAL62374.1| Iron-sulfur cluster assembly transcription factor IscR [Herminiimonas arsenicoxydans] Length = 157 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A+ +T+ D++ A +E +C P G +T L LNA Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120 Query: 118 -FFDVLTQYSIECLV 131 D L S++ LV Sbjct: 121 KMVDYLDSVSLKDLV 135 >gi|53804893|ref|YP_113471.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] gi|53758654|gb|AAU92945.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] Length = 153 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K TDY I +L A + +++A+ I+ KIL+ L +AGIV + RG Sbjct: 2 LRISKLTDYAIILLDQMARAGEQTFAAAELADQTSIAMPTTSKILKALARAGIVTSTRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG L + + ++ ++ A E + EC A + C SC + S A Sbjct: 62 RGGYALAQKPEHTSVARIIDAIEGPIALTECSAEQAL-CQQSSSCDVRSHWNVINRAVQT 120 Query: 121 VLTQYSIECLVRNRSS 136 L S+ ++R S+ Sbjct: 121 TLESVSLADMIRPVSA 136 >gi|327439663|dbj|BAK16028.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + QIA +SE +L +++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRQIAADKDLSEAYLEQLVSPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L ++I+ DV++ E Sbjct: 61 AYGGYMLAHKPNEISAADVIRVLE 84 >gi|238916580|ref|YP_002930097.1| cysteine desulfurase [Eubacterium eligens ATCC 27750] gi|238871940|gb|ACR71650.1| cysteine desulfurase [Eubacterium eligens ATCC 27750] Length = 143 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DY-PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y +RV++ A HN +Y P + IA ISE +L I+ L K + ++ Sbjct: 1 MKISTKGRYALRVMIDLAEHNTGEYIP--LMDIARRQDISEKYLEAIVATLSKNDFLISL 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKA 114 RG+ GG +L R + ++L ++ TE S C CP V C + K Sbjct: 59 RGKGGGYKLARNPEDYSVLSILLVTEGSLAPVACLEKKPNRCPKVAECKTLQMWENFEKL 118 Query: 115 LNAFFDVLT 123 +N +F +T Sbjct: 119 VNDYFSNIT 127 >gi|239637568|ref|ZP_04678540.1| Rrf2 family protein [Staphylococcus warneri L37603] gi|239596786|gb|EEQ79311.1| Rrf2 family protein [Staphylococcus warneri L37603] Length = 140 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++IT D+++ E E S Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESE 96 >gi|213962009|ref|ZP_03390274.1| Rrf2 family protein [Capnocytophaga sputigena Capno] gi|213955362|gb|EEB66679.1| Rrf2 family protein [Capnocytophaga sputigena Capno] Length = 145 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y A+H R++ IAEA I FL KILQ L + ++ + +G Sbjct: 2 LSNSSKYAINAVIYLALHASPTKRLAPKDIAEALHIPTSFLAKILQTLARKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +++VVK E+ C K +C C L + ++ + F Sbjct: 62 GGGFWLTDEEKAAPLMNVVKQIGEAEKFTSCAMGFK-ECSSEKPCPLHTSVQPFRDNFMR 120 Query: 121 VLTQYSIECLVR 132 LT SI + Sbjct: 121 ELTNNSIASFAQ 132 >gi|229098964|ref|ZP_04229899.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] gi|229105131|ref|ZP_04235782.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28] gi|229117993|ref|ZP_04247353.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228665442|gb|EEL20924.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228678312|gb|EEL32538.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28] gi|228684462|gb|EEL38405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] Length = 151 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 +GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 68 KGGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A +VL ++E LV N +S IK+ Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151 >gi|152978539|ref|YP_001344168.1| BadM/Rrf2 family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150840262|gb|ABR74233.1| transcriptional regulator, BadM/Rrf2 family [Actinobacillus succinogenes 130Z] Length = 154 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+ + P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALFGTNGPVTLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L D+I+I ++ A E+ V +C K +C C S+ + + Sbjct: 61 PGGGYQLGHSMDKISIGMIIAAVNENIAVTKCLG--KGNCQNGTECLTHSLWAELSHRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV+ S +K Sbjct: 119 DFLDKITLAELVKKHHSKQK 138 >gi|307132078|ref|YP_003884094.1| Fe-S cluster-containing transcription factor [Dickeya dadantii 3937] gi|306529607|gb|ADM99537.1| Fe-S cluster-containing transcription factor [Dickeya dadantii 3937] Length = 164 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDAAEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNR 134 + L +++ LV N+ Sbjct: 119 EFLNNITLDELVNNK 133 >gi|78222091|ref|YP_383838.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193346|gb|ABB31113.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 142 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ ++H++ P + IA I +L ++ L + IVE+VRG Sbjct: 1 MRLSTRAQYAVRAMVDLSLHSEGRPVSLKDIALREDIPLNYLEQLFNRLRRGAIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L R + I + ++V EE C K C +C + +L + + Sbjct: 61 PGGGYLLARESSAIRVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHNVWEMLGERIR 120 Query: 117 AFFDVLTQYSIECLVRNRSS 136 F D +T + R R Sbjct: 121 TFLDSITLEDLVIEARGRGG 140 >gi|323485653|ref|ZP_08090991.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum WAL-14163] gi|323691728|ref|ZP_08105988.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum WAL-14673] gi|323401003|gb|EGA93363.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum WAL-14163] gi|323504206|gb|EGB20008.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum WAL-14673] Length = 138 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L + Y ++AE + + F +KIL+ L KAGIV+ RG Sbjct: 1 MLITRETDYALRILRTLSDGKSYT--AGELAERESLPQKFAYKILKKLEKAGIVQITRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG RL T+ +++A E + + C + C G C + + L K N Sbjct: 59 SGGCRLGCDLRTATLYQLIEAVETNARLTSCM-TPGYQCEWRGRYGSPCTIHTQLAKVQN 117 Query: 117 A 117 A Sbjct: 118 A 118 >gi|254515564|ref|ZP_05127624.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR5-3] gi|219675286|gb|EED31652.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR5-3] Length = 160 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P R++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQNLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A+ I++ +V+ A E C K DC +C + + Sbjct: 61 PGGGYRLKRGAEDISVAEVISAVNEDTDATRCRG--KGDCQEGDTCLTHHLWMDLSDRIR 118 Query: 120 DVLTQYSIECLVRNRS 135 D LT S+ LV R Sbjct: 119 DFLTDISLADLVARRE 134 >gi|330683915|gb|EGG95683.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU121] Length = 140 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++IT D+++ E E S Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESE 96 >gi|37521489|ref|NP_924866.1| hypothetical protein glr1920 [Gloeobacter violaceus PCC 7421] gi|35212486|dbj|BAC89861.1| glr1920 [Gloeobacter violaceus PCC 7421] Length = 148 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ R Y ++ ++ IH +D P I QIA IS+ FL ++L L ++G V +VRG Sbjct: 2 LKLSTRGHYSVKAMLDLTIHRHDPPQPIRQIARRQNISKHFLEQLLILLRQSGFVRSVRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R QIT+ ++++A + + L S + +++ A Sbjct: 62 VQGGYVLARLPAQITLGEILRAVGDGMAPLGRIERDGTQAEDWVTMALWSRVHRSVEAAL 121 Query: 120 DVLTQYSIECLVRNRSS 136 D +T + R+R + Sbjct: 122 DRITLEDLYHDARSRQA 138 >gi|89896939|ref|YP_520426.1| hypothetical protein DSY4193 [Desulfitobacterium hafniense Y51] gi|89336387|dbj|BAE85982.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 147 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A+H+ + +S IAE ISE +L ++ L KAGI+ +V+G Sbjct: 1 MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89 +GG L A +I + +++ E VA Sbjct: 61 AQGGYVLADRAAEIKVGTILRVLEGDLSVA 90 >gi|77464012|ref|YP_353516.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462857|ref|YP_001043971.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332558886|ref|ZP_08413208.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77388430|gb|ABA79615.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126104521|gb|ABN77199.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|332276598|gb|EGJ21913.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 155 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L+ A+ N + +AE IS +L ++ L +AG+VE V Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L RPA+ I + ++++A EE+ A + LT+ L + L+A Sbjct: 61 RGPGGGYKLARPAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120 Query: 118 FFDV-LTQYSIECLVRN 133 V L Q + +++N Sbjct: 121 HVYVFLHQTRLSDIIKN 137 >gi|319948207|ref|ZP_08022366.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4] gi|319438142|gb|EFV93103.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4] Length = 160 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRI--------SQIAEACCISELFLFKILQPLVKA 51 M +T ++DY +R L+ A +D P R ++ I FL IL L +A Sbjct: 1 MRVTAKSDYALRALVELAAARSDDPARAPRDNPVSAEELGRLQDIPHGFLQAILSDLRRA 60 Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATE 83 G+V + RG+ GG L R AD+IT+ DV++A + Sbjct: 61 GLVASRRGKTGGWFLGRDADEITVADVMRAVD 92 >gi|325107421|ref|YP_004268489.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Planctomyces brasiliensis DSM 5305] gi|324967689|gb|ADY58467.1| transcriptional regulator, BadM/Rrf2 family [Planctomyces brasiliensis DSM 5305] Length = 140 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+K +Y +R ++ A D P IA +L +++Q L AG+V++ G G Sbjct: 2 LSKTAEYALRAVVLLASQPDKPFSADVIAGKTKAPRRYLTRVMQDLAAAGLVQSRPGPGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101 G + + D ++ILDV+ A + + C SH CPL Sbjct: 62 GYEMAKGIDAVSILDVINAVDPVERIRSCPLGLKSHTELCPL 103 >gi|229019725|ref|ZP_04176531.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] gi|229025951|ref|ZP_04182341.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228735352|gb|EEL85957.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228741570|gb|EEL91764.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] Length = 151 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 +GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 68 KGGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A +VL ++E LV N +S IK+ Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151 >gi|239994262|ref|ZP_04714786.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas macleodii ATCC 27126] Length = 161 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 GG L R A +I I +V++A +ES C + DC C LT L + L+ Sbjct: 61 PGGGYLLGREASKIAIGEVIRAVDESIDATRCQG--QADCQGGDRC-LTHSLWQDLSDRI 117 Query: 117 -AFFDVLT 123 AF + +T Sbjct: 118 AAFLNSIT 125 >gi|170743400|ref|YP_001772055.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197674|gb|ACA19621.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp. 4-46] Length = 150 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ L++ A+ ++++A A I + FL IL L AG+V + +G Sbjct: 2 LTNKGKYGLKALVHLAALPPGTRIGVAEVAAANNIPKKFLDAILGELRNAGLVHSRKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RP ++I + V+ + C + DCP G+C + V+ + N+ Sbjct: 62 GGYALARPPEEIRVGHAVRVLDGPLAPVPCASRTAYRPCEDCPDEGACAVRLVMLEVRNS 121 Query: 118 FFDVLTQYSI 127 VL ++ Sbjct: 122 IAGVLDTLTL 131 >gi|294792716|ref|ZP_06757863.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] gi|294794467|ref|ZP_06759603.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] gi|294454797|gb|EFG23170.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] gi|294456615|gb|EFG24978.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] Length = 149 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ D P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLVEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88 + GG RL + + TI++++ ATEES + Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAI 89 >gi|125974067|ref|YP_001037977.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714292|gb|ABN52784.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] Length = 151 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + +Y IS I+E IS++FL ++ L KA IV + +G +GG +L R QIT+LDV+ Sbjct: 26 NGEYITVIS-ISEKLGISKIFLEQVFSSLKKAKIVSSTKGVQGGYQLTRTPSQITVLDVL 84 Query: 80 KATEESFF 87 + E S F Sbjct: 85 LSVEVSLF 92 >gi|303228774|ref|ZP_07315592.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-134-V-Col7a] gi|303230469|ref|ZP_07317228.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-049-V-Sch6] gi|302514835|gb|EFL56818.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-049-V-Sch6] gi|302516573|gb|EFL58497.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-134-V-Col7a] Length = 149 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ A P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLAEQGQGKPVSLRSVAERQGISEKYLEGIVARLGAASLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88 + GG RL + + TI++++ ATEES + Sbjct: 61 KYGGYRLSKKPSEYTIIEILMATEESMAI 89 >gi|298241400|ref|ZP_06965207.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297554454|gb|EFH88318.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 137 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ T+Y + ++Y A+ + Q+AE +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSQATNYALHTMLYLVALPLGKTVGVQQLAELQGLSPTYLSKILTKLVKAGMIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R ++ L+V+ A E + + C Sbjct: 61 INGGYKLTRNKADLSFLEVIHAIEGTASLFHC 92 >gi|295688500|ref|YP_003592193.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430403|gb|ADG09575.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis ATCC 21756] Length = 143 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ Y +R ++ A N ++AE FL IL L + G++ + RG+ G Sbjct: 2 LSQKARYALRAMIELARENGQVT-AGELAERADAPRKFLEAILLSLSREGLIISRRGKFG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118 G L R ADQI+ ++++ + + C + DC + +C L L +A +A Sbjct: 61 GYVLGRTADQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDIATCALREALLRARDAT 120 Query: 119 FDVLTQYSI 127 VL YS+ Sbjct: 121 AAVLEGYSL 129 >gi|237744245|ref|ZP_04574726.1| RRF2 family protein [Fusobacterium sp. 7_1] gi|256027909|ref|ZP_05441743.1| RRF2 family protein [Fusobacterium sp. D11] gi|260494171|ref|ZP_05814302.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_33] gi|289765858|ref|ZP_06525236.1| RRF2 family protein [Fusobacterium sp. D11] gi|229431474|gb|EEO41686.1| RRF2 family protein [Fusobacterium sp. 7_1] gi|260198317|gb|EEW95833.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_33] gi|289717413|gb|EFD81425.1| RRF2 family protein [Fusobacterium sp. D11] Length = 143 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKI-DCPLVGSCGLTSVLRKAL 115 G GG +L ++I + + + ++ V +C K+ +C G CG T + K Sbjct: 61 GPTGGYKLAIKPEEIDLYMIYRILDDEEKVIDCNEMGEGKVHNCSEAG-CGDTCIWSKLD 119 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 NA +L++ S++ + N I++ Sbjct: 120 NAMTKILSETSLQDFINNGKRIQE 143 >gi|228908509|ref|ZP_04072350.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|228851156|gb|EEM95969.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 133 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +K T+Y + +++ A PN+ + +AE +S +L KIL L K G++ + Sbjct: 1 MKYSKATNYALHTMLFLA--KATPNKLVSVHHLAEMQNVSPTYLSKILTKLTKEGMIHSS 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG L + I+ LD++ A E + +C K C Sbjct: 59 SGPKGGYSLSNKWEDISFLDIIHAIEGKTSLFDCCLHDKPGC 100 >gi|332992276|gb|AEF02331.1| BadM/Rrf2 family transcriptional regulator [Alteromonas sp. SN2] Length = 161 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSTRGPVPLADISERQAISLSYLEQLFSRLRKNQLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L R A I+I +V++A +ES C + DC C L L ++ Sbjct: 61 PGGGYLLGRDAANISIGEVIRAVDESVDATRC--QGQADCQSGDRCLTHSLWQYLSDRIS 118 Query: 117 AFFDVLT 123 +F + +T Sbjct: 119 SFLNDIT 125 >gi|325000811|ref|ZP_08121923.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia sp. P1] Length = 158 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 6 RTDYGIRVLMYCAI--HNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++ ++Y AI D P S Q+AEA + + K+L PL G++ + +GR G Sbjct: 15 RFSSALQAMLYLAIAAERDEPTTSSAQLAEALGTNPSLVRKLLVPLGAGGLIVSTKGRTG 74 Query: 63 GVRLCRPADQITILDVVK 80 G RL RPA++IT+ ++ + Sbjct: 75 GTRLSRPAERITLAEIYR 92 >gi|256420420|ref|YP_003121073.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035328|gb|ACU58872.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis DSM 2588] Length = 165 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L K +Y I + Y + D I+ +A ISE +L KI L K G+V + G + Sbjct: 4 LGKGVEYAIHSMYYLVDVSRDSAMTIADMATFQNISESYLAKIFTRLQKGGLVRSALGVK 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L RPA++I+ D+ A E + EC Sbjct: 64 GGYVLARPAEEISFWDIAVAVEGRVSLFEC 93 >gi|160901533|ref|YP_001567114.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95] gi|160359177|gb|ABX30791.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis SJ95] Length = 150 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGI 53 M LT ++ Y IR L MY + + + I++IAE+ +S+ FL KI L KA I Sbjct: 1 MSLTVKSCYAIRGLYEMYKLQNRNEDEKNTKISIAKIAESSGVSQEFLAKIFAELKKAKI 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 V + +G+ GG + ++I + ++V+ E +C + +C +C + V ++ Sbjct: 61 VSSEKGKFGGFYFTKAPEKINLSEIVEVLEVPLNSYDCVSGG--ECENQKNCPVEFVWKR 118 Query: 114 ALNAFFDVLTQYSIECLVR 132 +A F+ L++ +++ ++ Sbjct: 119 VQDAIFNELSKITLKDVIE 137 >gi|238060932|ref|ZP_04605641.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882743|gb|EEP71571.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 166 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 28/157 (17%) Query: 1 MHLTKRTDYGIRVLMYCAI-------------HNDYPN----RISQIAEACCISELFLFK 43 M+++ R+DY +R ++ A+ H P + + +AE+ I FL Sbjct: 1 MYVSARSDYALRAMLAVAVAAADGGGTTGDLGHAPAPGGELVKAAALAESQAIPLSFLQG 60 Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF-----FVAECFASHKID 98 IL L +AG++ + RG GG L RPAD+I++ DV++A S AE H + Sbjct: 61 ILLDLRRAGLLLSHRGAEGGYALTRPADEISVGDVLRAVGGSLTSVRGLPAEIAGYHGV- 119 Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 + GL V A V+ + S+ L+ +S Sbjct: 120 -----ATGLRDVWLAVDGAIATVVDRTSLADLLAAKS 151 >gi|221324215|ref|ZP_03605509.1| hypothetical protein BsubsS_15007 [Bacillus subtilis subsp. subtilis str. SMY] Length = 97 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H + P + IA+ +SE +L +++ PL AG+V+++RG GG L D IT D++ Sbjct: 8 HGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDAITAGDII 67 Query: 80 KATEESFFVAECF 92 + E + +C+ Sbjct: 68 RVLEGPISLLKCW 80 >gi|169333748|ref|ZP_02860941.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM 17244] gi|169259597|gb|EDS73563.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR L+Y A + +R I A I E +L+K++ + G VE VRG Sbjct: 1 MQLNITTDYAIRSLIYIAEKDREVSR-RDICSATKIPENYLYKLMAKFRECGYVEAVRGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L I++ D+V E S + C Sbjct: 60 DGGYKLIVDPKDISVFDIVTLVEGSININRC 90 >gi|186685463|ref|YP_001868659.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467915|gb|ACC83716.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 156 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +S+I I E +L +IL L +AG+V++ RG +GG L R QIT+L++V E Sbjct: 39 PLTMSEITTKQPIPERYLEQILTNLRRAGVVQSQRGSKGGFVLAREPWQITLLEIVTLVE 98 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 E + P + + V +A A +VL +Y+++ L R + Sbjct: 99 -----GERKEKDTSNSPTLEKTLVYEVWEQANAAAIEVLGRYTLQDLCEERET 146 >gi|237744867|ref|ZP_04575348.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229432096|gb|EEO42308.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 141 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 11/134 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + D S+IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDKIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKALN 116 GG +L R IT+ D V+ E+ + + C A SC + L K N Sbjct: 61 ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVAGQ-------TSCSIIFEALEKVEN 113 Query: 117 AFFDVLTQYSIECL 130 F L + + + L Sbjct: 114 NFLKNLEKVNFQEL 127 >gi|33152205|ref|NP_873558.1| hypothetical protein HD1080 [Haemophilus ducreyi 35000HP] gi|33148427|gb|AAP95947.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 150 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L + +I++ V+ A ES V +C Sbjct: 61 PGGGYQLGKSPAEISVGMVISAVSESLDVTKC 92 >gi|242373926|ref|ZP_04819500.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242348480|gb|EES40082.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 140 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++IT D+++ E E S Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESE 96 >gi|313201811|ref|YP_004040469.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688] gi|312441127|gb|ADQ85233.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. MP688] Length = 154 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TD G+R LMY + H + I+++A+ + L K++ L K G ++ R Sbjct: 5 MQLTKFTDLGLRALMYVSQSTHTRMVS-ITELAQQLNVPRNHLIKVVTFLNKTGWIQATR 63 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG+RL +++ V++ E + +C + CPL GSCGL VL ++L+ F Sbjct: 64 GPGGGLRLGMDPASLSLGLVIRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVF 120 Query: 119 FDVLTQYSIECLVRNRSS 136 + L Y++ + +S Sbjct: 121 YRHLDTYTLADVTPKHTS 138 >gi|296313979|ref|ZP_06863920.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria polysaccharea ATCC 43768] gi|296839409|gb|EFH23347.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria polysaccharea ATCC 43768] Length = 149 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L PA +I I ++ A E+ +C + K +C C LT L + LN Sbjct: 61 PGGGYILAAPAARINIAQIISAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRSS 136 D L +++ ++ +++ Sbjct: 118 NDYLGSVTLQSIIEQKTT 135 >gi|113970076|ref|YP_733869.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4] gi|114047317|ref|YP_737867.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7] gi|117920724|ref|YP_869916.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3] gi|126174611|ref|YP_001050760.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS155] gi|153000907|ref|YP_001366588.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS185] gi|160875615|ref|YP_001554931.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS195] gi|217973136|ref|YP_002357887.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS223] gi|304408985|ref|ZP_07390606.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|307302988|ref|ZP_07582743.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] gi|113884760|gb|ABI38812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4] gi|113888759|gb|ABI42810.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7] gi|117613056|gb|ABK48510.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3] gi|125997816|gb|ABN61891.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS155] gi|151365525|gb|ABS08525.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS185] gi|160861137|gb|ABX49671.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS195] gi|217498271|gb|ACK46464.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS223] gi|304352806|gb|EFM17203.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|306913348|gb|EFN43770.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] Length = 153 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL A+ I++ VV A +ES C Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRC 92 >gi|315267803|gb|ADT94656.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS678] Length = 173 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 21 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL A+ I++ VV A +ES C Sbjct: 81 PGGGYRLGLEANDISVGMVVHAVDESVDATRC 112 >gi|261400315|ref|ZP_05986440.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria lactamica ATCC 23970] gi|269209934|gb|EEZ76389.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria lactamica ATCC 23970] Length = 148 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L PA +I I ++ A E+ +C + K +C C L L K +N Sbjct: 61 PGGGYILAAPAARINIAQIISAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118 Query: 117 AFFDVLTQYSI 127 + +T SI Sbjct: 119 DYLGSVTLQSI 129 >gi|59801064|ref|YP_207776.1| hypothetical protein NGO0637 [Neisseria gonorrhoeae FA 1090] gi|194098839|ref|YP_002001902.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae NCCP11945] gi|239999125|ref|ZP_04719049.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae 35/02] gi|240013967|ref|ZP_04720880.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae DGI18] gi|240016408|ref|ZP_04722948.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae FA6140] gi|240080528|ref|ZP_04725071.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae FA19] gi|240113104|ref|ZP_04727594.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae MS11] gi|240115860|ref|ZP_04729922.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID18] gi|240118158|ref|ZP_04732220.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID1] gi|240121535|ref|ZP_04734497.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID24-1] gi|240123706|ref|ZP_04736662.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID332] gi|240125897|ref|ZP_04738783.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae SK-92-679] gi|240128409|ref|ZP_04741070.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae SK-93-1035] gi|254493902|ref|ZP_05107073.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260440325|ref|ZP_05794141.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae DGI2] gi|268594960|ref|ZP_06129127.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268596661|ref|ZP_06130828.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268599189|ref|ZP_06133356.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601536|ref|ZP_06135703.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603874|ref|ZP_06138041.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682338|ref|ZP_06149200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684495|ref|ZP_06151357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686806|ref|ZP_06153668.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043619|ref|ZP_06569335.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|293398928|ref|ZP_06643093.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria gonorrhoeae F62] gi|59717959|gb|AAW89364.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934129|gb|ACF29953.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae NCCP11945] gi|226512942|gb|EEH62287.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548349|gb|EEZ43767.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268550449|gb|EEZ45468.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268583320|gb|EEZ47996.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585667|gb|EEZ50343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588005|gb|EEZ52681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622622|gb|EEZ55022.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624779|gb|EEZ57179.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627090|gb|EEZ59490.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012082|gb|EFE04071.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|291610342|gb|EFF39452.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria gonorrhoeae F62] gi|317164418|gb|ADV07959.1| hypothetical protein NGTW08_0991 [Neisseria gonorrhoeae TCDC-NG08107] Length = 148 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L P QI I ++ A E+ +C + K +C C L L K +N Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118 Query: 117 AFFDVLTQYSI 127 + +T SI Sbjct: 119 DYLGSVTLQSI 129 >gi|253681092|ref|ZP_04861895.1| Rrf2 family protein [Clostridium botulinum D str. 1873] gi|253562941|gb|EES92387.1| Rrf2 family protein [Clostridium botulinum D str. 1873] Length = 139 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R+++Y C + I+E I FL KIL+ L +AGIVE+ RG Sbjct: 1 MKITQEVDYALRIVLYLCKLGFGEKIEAKFISEHENIPIRFLLKILRKLKQAGIVESFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L + I+ D++ A + ++ C K Sbjct: 61 INGGYALNKYPSDISFKDIILAIDGPIYMNRCLYDPK 97 >gi|261867572|ref|YP_003255494.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390585|ref|ZP_06634919.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412904|gb|ACX82275.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951119|gb|EFE01238.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D7S-1] Length = 157 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ ND P +S I+E IS +L ++ L + +V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALYANDGPVSLSDISERQHISLSYLEQLFAKLRRHNVVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +I+I ++ A E+ C +C C S+ K Sbjct: 61 PGGGYKLGFAPSEISIAMIITAVNENIETTACLGHG--NCSNGSECLTHSLWEKLSQRIE 118 Query: 120 DVLTQYSIECLV 131 D L++ ++E LV Sbjct: 119 DFLSEITLEELV 130 >gi|126650609|ref|ZP_01722832.1| transcriptional regulator [Bacillus sp. B14905] gi|126592765|gb|EAZ86764.1| transcriptional regulator [Bacillus sp. B14905] Length = 140 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M +K T+Y + +++ + P + +A+ +S +L KIL LVKAG++E+ Sbjct: 2 MKYSKATNYALHTMVFLT---NTPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIES 58 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G GG R+ + +++ LDV+ A E + C + H+ D C + V+ A N Sbjct: 59 NPGVNGGYRISKRPQEVSFLDVIYAIEGQTSLFSCSSDHE-DSFHNEGCLIEQVMVDAEN 117 Query: 117 AFFDVLTQ 124 + L++ Sbjct: 118 NMKEELSK 125 >gi|318041035|ref|ZP_07972991.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp. CB0101] Length = 142 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + +T YG+ LM A R +S+IA I E +L +++ L ++GI+ ++R Sbjct: 1 MGFSAKTTYGLLALMELADVAGSGERLQVSEIAARQAIPERYLEQMMTSLRRSGILRSIR 60 Query: 59 GRRGGVRLCRPADQITILDVV 79 G RGG +L + ADQI + +V+ Sbjct: 61 GARGGYQLAKAADQILLSEVI 81 >gi|271966528|ref|YP_003340724.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509703|gb|ACZ87981.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 154 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ RT Y +R ++ A D P +IA I F IL L +AG++ + RG Sbjct: 2 MRISARTQYALRAMVALAA-ADNPIHAERIAATQDIPRRFCDNILLQLRRAGLIHSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L PA++IT+ DV++ +E Sbjct: 61 DGGYWLAHPAEKITLADVIRVSE 83 >gi|194335942|ref|YP_002017736.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] gi|194308419|gb|ACF43119.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] Length = 137 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ +YG+ + Y A + ++A+ S+ FL K +Q L +AGI +V+G Sbjct: 2 LQVSRKFEYGLHAVTYLATKGVGRVVTVKEMADEIGFSQEFLSKAMQSLKRAGIATSVQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + D+IT+ D+ A E + C + C + SC L Sbjct: 62 VKGGYTLGKTMDEITVADIAIAIEGKPHLVRCGVTPD-SCEIFSSCHHRGYLNNLQYKIQ 120 Query: 120 DVLTQYSIECLV 131 ++LT ++ L+ Sbjct: 121 ELLTATTLHSLL 132 >gi|160903152|ref|YP_001568733.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360796|gb|ABX32410.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis SJ95] Length = 156 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M LT ++ Y +R L A+ + + IS+++E I + FL KI L AGIV++ Sbjct: 1 MSLTVKSSYALRALFELAVLAEDEGKEKVPISELSERQNIPKDFLEKIFIELRDAGIVKS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 VRG+ GG L + + + ++++ ++ +C +C L C + V ++ N Sbjct: 61 VRGKFGGYALAKNPKDLRLSEIIQVLDKPLQSFDCIVG---ECSLEIECAVEFVWKRVNN 117 Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140 + L++ +++ ++ I KI Sbjct: 118 SIMLELSKMTLQDIIDYGRKIAKI 141 >gi|114331239|ref|YP_747461.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas eutropha C91] gi|114308253|gb|ABI59496.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha C91] Length = 155 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ AI H P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTALLDIAIRHGGGPVALADISERQRISLSYLEQLFSKLRQRKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D++++ D++ A +E +C K +C C + K F Sbjct: 61 PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWTKLNEIIF 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L ++E LV +S Sbjct: 119 DYLGNVTLERLVEEQSQ 135 >gi|302035787|ref|YP_003796109.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300603851|emb|CBK40183.1| putative HTH-type transcriptional regulator, rrf2 family [Candidatus Nitrospira defluvii] Length = 150 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YGI + A+H+ + P IA+ I FL ++L + KAG+V + RG Sbjct: 1 MKVSLRATYGIIAAVDLALHHAEQPVCAKSIAKRQAIPARFLEQVLHAMKKAGVVASQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNA 117 +GG L R ++++ D++ A E E H L + + A Sbjct: 61 AQGGYVLSRKPSELSVADILDALEGPLLTTNGEGGPKHSSSRGAKQEALLAHIWDRVKRA 120 Query: 118 FFDVLTQYSIECLVRNRSSI 137 VL++ ++E L + + S+ Sbjct: 121 ELSVLSEVTVEELAKRQRSL 140 >gi|251792922|ref|YP_003007648.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter aphrophilus NJ8700] gi|247534315|gb|ACS97561.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter aphrophilus NJ8700] Length = 156 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI+ ND P +S I+E IS +L ++ L + IV++VRG Sbjct: 1 MKLTSKGRYAVTAILDIAIYANDGPVSLSDISERQHISLSYLEQLFAKLRRNNIVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG +L ++I+I V+ A E+ +C K +C C LT L + L+ Sbjct: 61 PGGGYKLGYTPNEISIGMVIAAVNENIETTKCLG--KGNCQNGAEC-LTHTLWEKLSLRI 117 Query: 119 FDVLTQYSIECLV 131 D L + ++ LV Sbjct: 118 ADFLNEITLAELV 130 >gi|170717785|ref|YP_001783506.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus 2336] gi|168825914|gb|ACA31285.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus 2336] Length = 135 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG +L DQI+I V+ A E+ V +C + DC Sbjct: 61 PGGGYQLGLSTDQISIGMVINAVNENINVTKCLGNG--DC 98 >gi|24373816|ref|NP_717859.1| Rrf2 family protein [Shewanella oneidensis MR-1] gi|120598676|ref|YP_963250.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1] gi|146293246|ref|YP_001183670.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens CN-32] gi|24348214|gb|AAN55303.1|AE015668_4 Rrf2 family protein [Shewanella oneidensis MR-1] gi|120558769|gb|ABM24696.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. W3-18-1] gi|145564936|gb|ABP75871.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens CN-32] gi|319426240|gb|ADV54314.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens 200] Length = 153 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL A+ I++ VV A +ES C Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRC 92 >gi|295094610|emb|CBK83701.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp. ART55/1] Length = 136 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + +Y +RV+ AI++D P + +I + +S+ +L I++ L KA ++E Sbjct: 1 MVISSKGEYALRVMADLAINHDGRFIP--LKEIVQKEELSQKYLESIMRMLSKANLIEAA 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G GG RL + ++ T+ ++++ TE C + + C G C + + Sbjct: 59 SGHGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSAMTCDRSGQCYTLPIWQGLAEL 118 Query: 118 FFDVLTQYSIECLVRN 133 D ++ + RN Sbjct: 119 IQDYFQGKTLADIARN 134 >gi|108805410|ref|YP_645347.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766653|gb|ABG05535.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter xylanophilus DSM 9941] Length = 156 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 + L+ Y +R L+Y A N R++ I+ I L ++L L +A +V + Sbjct: 17 LELSSEGRYALRALIYLARVN---RRVTADTISADTGIPRRLLARVLAKLSRARLVRSSE 73 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG L R +QIT+ + V+A E F V C + C C + + A Sbjct: 74 GRGGGSELARSPEQITLREAVEAIEGPFEVTRCIMEERA-CGTGAPCAMHEAWEEGQEAI 132 Query: 119 FDVLTQYSIECLV 131 D L ++ V Sbjct: 133 LDYLQGQTLSEFV 145 >gi|330836544|ref|YP_004411185.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] gi|329748447|gb|AEC01803.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] Length = 146 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 5/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y + L++ A+ D + +S I+E IS +L ++ PL + I++ R Sbjct: 1 MRISTRGRYSLEALLFIALVQDAESIVSAHLISEKTGISYGYLEQLFIPLKRTRIIKGSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVA---ECFASHKIDCPLVGSCGLTSVLRKAL 115 G +GG R+ D+IT+ D++++ E S + + I P+ + L + Sbjct: 61 GAKGGYRIASDLDKITVGDILRSVENSLKDSSRPDSAVRQDISNPIPKVKETWAELHDTI 120 Query: 116 NAFFDVLT 123 + F D LT Sbjct: 121 SGFIDSLT 128 >gi|291300389|ref|YP_003511667.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569609|gb|ADD42574.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 162 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M T + G+ ++ ++ + NR S++A + +L K LQ L +AGI+ + Sbjct: 1 MSRTMKMSEGVEWAIHSCLNLAWANRDAIPASRLAAYHELPPAYLNKQLQALCRAGILTS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCP---LVGSCGLTSV 110 G RGG RL RP D I+ +DVV A E ++F E P +C ++ Sbjct: 61 TTGPRGGFRLARPLDDISFMDVVTAIEGGDDAFACTEIRQRGPNGGPAENFPHTCAVSRT 120 Query: 111 LRKALNAFFDVLTQYSI 127 +R A + L Q+++ Sbjct: 121 MRAAELTWRRELAQHTL 137 >gi|326404674|ref|YP_004284756.1| FeS assembly transcriptional regulator [Acidiphilium multivorum AIU301] gi|325051536|dbj|BAJ81874.1| FeS assembly transcriptional regulator [Acidiphilium multivorum AIU301] Length = 152 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 8/123 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ TDY + VL+ A IA I E + K+L+ L ++G+V + RG G Sbjct: 1 MSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGAHG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID------CPLVGSCGLTS-VLRKAL 115 G RL RP I I DV+ A + + C CP+ G G+ + + AL Sbjct: 60 GYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGSCDSASLCPMAGRWGVVNDAISDAL 119 Query: 116 NAF 118 NA Sbjct: 120 NAI 122 >gi|317051126|ref|YP_004112242.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] gi|316946210|gb|ADU65686.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] Length = 136 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ + YG+ ++Y A H D +I IA+ I + +L ++L L K G VE+ RG G Sbjct: 4 VSSKGAYGLAAMLYLAQHADKLIQIRDIAKNGGIPQNYLEQLLVQLKKNGFVESTRGAGG 63 Query: 63 GVRLCRPADQITILDVVKATE 83 G RL ITI +++A E Sbjct: 64 GYRLAMEPKDITIYQILEALE 84 >gi|148555827|ref|YP_001263409.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501017|gb|ABQ69271.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 134 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY + V++ A + R++ +++ + K++ L +AG++ + R Sbjct: 1 MRLSSLADYAV-VMLSAAARHGAGERLTATLLSDETGVPLPTAQKLMGRLAQAGLLASAR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 G GG RL R I++ D+V+A E + C H+ DC L +C Sbjct: 60 GTGGGFRLARDPGAISLADIVEAVEGPIAMTACVDDHRHDCGLESAC 106 >gi|304398596|ref|ZP_07380468.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] gi|304353807|gb|EFM18182.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] Length = 165 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + ++ I++ +V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKESNTISVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117 Query: 119 FDVLTQYSIECLVRNR 134 + L ++ LV N+ Sbjct: 118 SEFLNNITLAELVNNQ 133 >gi|229087063|ref|ZP_04219215.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44] gi|228696256|gb|EEL49089.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44] Length = 143 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 +GG L R D+IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 60 KGGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 119 Query: 117 AFFDVLTQYSIECLVRNRSS 136 A +VL +++ LV N S Sbjct: 120 AMENVLANVTVQQLVTNLQS 139 >gi|312143964|ref|YP_003995410.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] gi|311904615|gb|ADQ15056.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] Length = 150 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A H + I +I+E ISE +L ++ L KA +V++VRG Sbjct: 1 MKISTKGRYGLRALVDLAEHEEGKAIPIRKISERQDISEQYLEQLFATLRKAKLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I++ +++ A E +C C V C + + + +A Sbjct: 61 AHGGYMLNHEPEDISVAEILTALEGPLVPVDCVVEENF-CNYVDRCVMHGLWEEMADAIN 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +++ ++ L+ + KK Sbjct: 120 EIIENTTLADLLERAIAEKK 139 >gi|168186835|ref|ZP_02621470.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum C str. Eklund] gi|169295240|gb|EDS77373.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum C str. Eklund] Length = 131 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 11/109 (10%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + + P I IA+ ISEL+L ++ PL KA +++++RG +GG L + I++ D++ Sbjct: 8 YGETPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRGAQGGYVLNKDPKDISVSDII 67 Query: 80 KATEESFFVAECFASHKID----CPLVGSCGLTSVLRKALNAFFDVLTQ 124 E ++ C + + D CP T +L K + D +T+ Sbjct: 68 NVLEGPIEISSCVDTGECDNMDICP-------TRLLWKKIKKSIDEVTE 109 >gi|154502553|ref|ZP_02039613.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149] gi|153796745|gb|EDN79165.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149] Length = 142 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 8/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y + + + A+H D ++ IA+ +SE +L +I++ L +AG+V++VR Sbjct: 1 MKMSTRGQYALEIAVDLALHLMPDRLESLNDIAKRRNLSEKYLERIMKLLKEAGLVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115 G GG L + +I++L+V++A E C + ++C + C S + Sbjct: 61 GAYGGYCLTKEPGEISVLEVLRAAEGQLAPVSCLVENTECGMECEI---CSTKSTWGEMW 117 Query: 116 NAFFDVLTQYSI 127 D + ++ Sbjct: 118 EQILDTAAEVTV 129 >gi|300087504|ref|YP_003758026.1| BadM/Rrf2 family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527237|gb|ADJ25705.1| transcriptional regulator, BadM/Rrf2 family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 147 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG R L+ A + D I IA IS +L ++ PLV A ++++VRG Sbjct: 1 MKLSTRARYGTRALLDLAQNYGDQVIPIKDIARRQQISLSYLEHLIGPLVDARLIQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 +GG++L + + I + +VV E EC + K D L C + A Sbjct: 61 AKGGLKLAKSPEAIKLSEVVSLLEGPIEPVECIHNPEKCDRSLF--CATRDIWDDMGRAI 118 Query: 119 FDVLTQYSIECLVRNRSS 136 +VL Q ++ LV + + Sbjct: 119 TEVLGQTTLADLVSRQQA 136 >gi|160879964|ref|YP_001558932.1| BadM/Rrf2 family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428630|gb|ABX42193.1| transcriptional regulator, BadM/Rrf2 family [Clostridium phytofermentans ISDg] Length = 143 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y IRVL+ A HN+ + IA ISE +L I+ L K ++ ++RG Sbjct: 1 MKISTKGRYAIRVLIDLAEHNNGEFITLMDIAGRQEISEKYLEAIVSILSKNDLLISLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 + GG +L + +Q T+ +++ TE S C +C C + K N Sbjct: 61 KGGGYKLAKAPEQYTVGSILRLTEGSLAPVSCLEKTPNNCTRATECRTLHMWEEFYKLTN 120 Query: 117 AFFDVLTQYSIECLVRNRSS 136 +FD +T I LV+ S Sbjct: 121 DYFDGIT---IADLVKKNDS 137 >gi|301167345|emb|CBW26927.1| putative DNA-binding protein [Bacteriovorax marinus SJ] Length = 179 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y +R ++ H N P R+ +I++ IS +L ++ + L V++VRG Sbjct: 1 MRLTSKGRYAVRAMLDLTTHSNGNPVRLQEISQRQNISLHYLEQLFRKLRNGQAVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 GG L R DQIT+ D+++ E+ A+ Sbjct: 61 PGGGYVLARSMDQITVKDILECVGENINPAK 91 >gi|291485160|dbj|BAI86235.1| hypothetical protein BSNT_03994 [Bacillus subtilis subsp. natto BEST195] Length = 139 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 2 LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L D IT D+++ E E + Sbjct: 62 AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEE 98 >gi|167856166|ref|ZP_02478905.1| putative HTH-type transcriptional regulator [Haemophilus parasuis 29755] gi|219870330|ref|YP_002474705.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus parasuis SH0165] gi|167852724|gb|EDS23999.1| putative HTH-type transcriptional regulator [Haemophilus parasuis 29755] gi|219690534|gb|ACL31757.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus parasuis SH0165] Length = 148 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H D P + I++ IS +L ++ L + G+V +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKDMPVSLVDISDRQAISLSYLEQLFAQLRREGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + ++I + ++ A ES V++C + +C C S+ + N Sbjct: 61 PGGGYQLAKTPEEINVSLIIAAVNESVDVSKCKGN--GNCSNNSRCLTHSLWERLENQIE 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ LV S Sbjct: 119 QYLHTITLAELVEENS 134 >gi|120405372|ref|YP_955201.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958190|gb|ABM15195.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium vanbaalenii PYR-1] Length = 158 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIELATADDGALVKTDDLAKAQGIPPQFLVDILSDLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 R GG L RPA I+I DV++ + D P G + LT V R + Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118 Query: 119 FDVLTQYSI 127 VL Q S+ Sbjct: 119 RSVLEQTSV 127 >gi|309388970|gb|ADO76850.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium praevalens DSM 2228] Length = 148 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A H + I +I+E ISE +L ++ L KA +V++VRG Sbjct: 1 MRVSTKGRYGLRAMVDLAEHEEGEAIPIRKISERQDISEQYLEQLFATLRKAELVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L + I++ D++ E +C C + C GL L A+N Sbjct: 61 AHGGYMLNHEPEDISVADIITTLEGPIAPVDCVIESDF-CNYIDKCVIHGLWEELADAIN 119 Query: 117 AFFDVLT 123 + +T Sbjct: 120 GVIENMT 126 >gi|229094650|ref|ZP_04225696.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|228688732|gb|EEL42582.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] Length = 168 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KAGIV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|254459294|ref|ZP_05072715.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] gi|207083907|gb|EDZ61198.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] Length = 133 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ ++Y I L+ + P ++ I + FL KILQ L K GI+++ +G Sbjct: 1 MLITRASEYAILSLIVLS-KATSPMDSETLSNQLSIPKSFLAKILQSLAKKGILKSFKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L + I++L V+ A E ++ V +C S K DCP + C + L K Sbjct: 60 NGGFTLLKDPKDISMLSVMSAVEGKAPAVFDCSPSQK-DCPSDRAELCSIWPFLNKLQGK 118 Query: 118 FFDVLTQYSIECLVR 132 D L + S++ ++ Sbjct: 119 IDDFLAELSLDDILE 133 >gi|145219397|ref|YP_001130106.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205561|gb|ABP36604.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeovibrioides DSM 265] Length = 137 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++++ +YG+ + Y A+ + ++A S+ FL K +Q L +AGI + +G Sbjct: 2 LQVSRKFEYGLHAVAYLAMKGSGEAVTVKEMARDIGFSQEFLAKAMQNLTRAGIASSAQG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +IT+ D+ A E + C + C + SC + + N+ Sbjct: 62 VKGGYMLARLPSEITVADIGLAIEGEPHMVRCIVNAD-SCEIYSSCRMRGYIIGLQNSIQ 120 Query: 120 DVLTQYSIECLVR 132 +L ++ L++ Sbjct: 121 GLLASTTVATLLQ 133 >gi|307256986|ref|ZP_07538762.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261420|ref|ZP_07543093.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306864470|gb|EFM96377.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306868877|gb|EFN00681.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 150 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG +L + ++I++ ++ A E+ V +C S +C C L L + + Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGS--GNCSKNSQCLTHHLWERLEEQIG 118 Query: 117 AFFDVLT 123 F + +T Sbjct: 119 VFLNTIT 125 >gi|298505456|gb|ADI84179.1| transcriptional regulator, Rrf2 family [Geobacter sulfurreducens KN400] Length = 153 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ ++Y A D P I+ +A I + FL IL L AG++++ +G+ Sbjct: 2 ISKKTKYALKAMLYLAREQDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +P +I++ +++ E +C + +C SCG+ V++ +A Sbjct: 62 GGYYLAQPPREISMGRIIRILEGPLAPVQCVSETSYARCEECDDEWSCGIRLVMKDVRDA 121 Query: 118 FFDVL 122 +L Sbjct: 122 MATIL 126 >gi|52144351|ref|YP_082476.1| transcriptional regulator [Bacillus cereus E33L] gi|51977820|gb|AAU19370.1| transcriptional regulator [Bacillus cereus E33L] Length = 168 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KAGIV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|296535637|ref|ZP_06897815.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296264032|gb|EFH10479.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 151 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 44/74 (59%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ + P +++IA+A +S +L ++ L +AG+V++ RG GG RL RPA+ I I Sbjct: 24 AVTRERPVSLAEIAQAQLLSVAYLEQLFARLRRAGLVDSARGPGGGYRLARPAEAIAIGT 83 Query: 78 VVKATEESFFVAEC 91 +++A +E C Sbjct: 84 IIEAVDEPISATRC 97 >gi|167755758|ref|ZP_02427885.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402] gi|237734725|ref|ZP_04565206.1| transcriptional regulator [Mollicutes bacterium D7] gi|167704697|gb|EDS19276.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402] gi|229382053|gb|EEO32144.1| transcriptional regulator [Coprobacillus sp. D7] Length = 146 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + I +L+ A ND P + I+++ +S+ +L KI++ LV AG++ + G Sbjct: 1 MKVKNSVEQAICLLIIIAHSNDEKPLKSYNISDSLGVSDSYLKKIIRQLVVAGLITSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 ++GGV L R D+IT+LD+ +A E Sbjct: 61 KKGGVCLSRKPDKITLLDIFEAIE 84 >gi|269216599|ref|ZP_06160453.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] gi|269130128|gb|EEZ61210.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] Length = 160 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 3/108 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +T + Y +R++ A H P + +A+ IS +L ++ +PLVK+G++++V Sbjct: 1 MLVTTKGRYAMRLMADVAHHFEKEGTPLSLRAVAQREGISMKYLEQLARPLVKSGLLKSV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 RG+ GG L P+ I D+++A E + DC + C Sbjct: 61 RGKGGGYVLAEPSAAIRAGDILRAAEGNVLPVSSCDGVTFDCARIADC 108 >gi|87309332|ref|ZP_01091468.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM 3645] gi|87287971|gb|EAQ79869.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM 3645] Length = 160 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ Y ++ + A + P S++A + E FL ++L+ LV GI+ + RG Sbjct: 1 MKLSRTVAYALQATLQLAETDSSSPVPCSKLAAKGDMPERFLLQVLRNLVTHGILRSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKA 81 GG L RPA+QI++L++++A Sbjct: 61 VDGGYTLVRPAEQISLLEIIEA 82 >gi|281356072|ref|ZP_06242565.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] gi|281317441|gb|EFB01462.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] Length = 145 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++L+ ++ YG+R+L+ A + ++ ++AE IS+ ++ +I+ L +G+V + R Sbjct: 2 LNLSTKSRYGLRILLQLAQCRGSGRSCKVRELAEQQSISDAYVEQIMIALKGSGLVFSAR 61 Query: 59 GRRGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GR GG L R PAD IT+LDV++ E + C + C + C +V ++ A Sbjct: 62 GRNGGYLLGRVPAD-ITVLDVIELFEGRIDLVGCTGPEQ-RCARIAGCLSRTVWQRLSEA 119 Query: 118 F 118 F Sbjct: 120 F 120 >gi|126658452|ref|ZP_01729600.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp. CCY0110] gi|126620194|gb|EAZ90915.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp. CCY0110] Length = 147 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ +Y P + IA+ + +L K+L + ++G+V ++RG Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIEMRRSGLVNSLRG 60 Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86 +GG +L R QI+ ILD V T E Sbjct: 61 SQGGYQLARQPSQISLGEILDAVGDTIEPL 90 >gi|88813391|ref|ZP_01128628.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus mobilis Nb-231] gi|88789357|gb|EAR20487.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus mobilis Nb-231] Length = 155 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 16/147 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A+H N P ++ I++ IS +L ++ L +A +V VRG Sbjct: 1 MKLSTKGRYAVTAMLDLALHENRGPVILADISQGQGISLSYLEQLFARLRRARLVTGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117 GG RL RPA IT+ DV+ A +++ + ++ L G+ LT L L+A Sbjct: 61 PGGGYRLARPAQVITVADVIVAVDDN---GDALGGYE--GKLNGAHCLTHDLWSELSAQI 115 Query: 118 --------FFDVLTQYSIECLVRNRSS 136 D+ ++ SI L R ++ Sbjct: 116 YDFLNGITLADLASESSIRVLARTETA 142 >gi|167758028|ref|ZP_02430155.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704] gi|167663925|gb|EDS08055.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704] Length = 166 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A+++ P ++ +A IS +L ++ L KAG+V +++G Sbjct: 20 MKISTKGRYGLRALVDLAVYSQGEPTALAMVAARQKISLNYLEQVFGQLRKAGLVRSIKG 79 Query: 60 RRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDC 99 GG L +PA IT+ ++++ E F V E +D Sbjct: 80 PSGGYLLAKPAKDITVKEILEVLEGPFSIVGEDLDRSSLDA 120 >gi|229828909|ref|ZP_04454978.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM 14600] gi|229792072|gb|EEP28186.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM 14600] Length = 144 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A +N P I IA ISE +L +I+ L +AG V +VRG Sbjct: 1 MKISTKGRYALRLMLDLAAYNTGEPISIKDIARRQAISEKYLEQIISVLNRAGYVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + T+ + + TE S E K D V RK A Sbjct: 61 AGGGYLLTRDPKEYTVGMIFRLTEGSLAPVEGLEDGKPDLADHPELVTYDVYRKIYEAVN 120 Query: 120 DVLTQYSIECLVRNRSSI 137 V+ ++ LV ++ + Sbjct: 121 QVVDHITLADLVDHQRQL 138 >gi|172035368|ref|YP_001801869.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142] gi|171696822|gb|ACB49803.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142] Length = 153 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ +Y P + IA+ + +L K+L + ++G+V ++RG Sbjct: 7 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIKMRRSGLVNSLRG 66 Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86 +GG +L R QI+ ILD V T E Sbjct: 67 SQGGYQLARQPSQISLGQILDAVGDTIEPL 96 >gi|218441057|ref|YP_002379386.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Cyanothece sp. PCC 7424] gi|218173785|gb|ACK72518.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7424] Length = 151 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++L + +Y + L+ A H +P +++I I E +L +IL L + G++++ R Sbjct: 9 LNLPSKVEYALLALLEMASQSHLKHPLTVNEITAKQPIPERYLEQILATLRRGGLLKSQR 68 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R IT+L++V E + V E ++ L+ +A A Sbjct: 69 GSKGGYVLAREPQDITLLEIVSIIEGNRQVKENTDLSTVEMKLIQDS-----WHQANQAA 123 Query: 119 FDVLTQYSIECLVRNRSS 136 +L QY++ L + R S Sbjct: 124 QSILEQYTLLDLCKQRES 141 >gi|329737377|gb|EGG73631.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU028] Length = 140 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L P++QIT D+++ E E S Sbjct: 61 AKGGYQLRVPSEQITAGDIIRLLEGPITFVESIDSE 96 >gi|319651668|ref|ZP_08005795.1| YrzC protein [Bacillus sp. 2_A_57_CT2] gi|317396735|gb|EFV77446.1| YrzC protein [Bacillus sp. 2_A_57_CT2] Length = 139 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + +IT D+++ E Sbjct: 61 AYGGYILGKEPTKITAGDIIRVLE 84 >gi|262281617|ref|ZP_06059391.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262256943|gb|EEY75687.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGV 64 GG+ Sbjct: 64 GGGI 67 >gi|224476724|ref|YP_002634330.1| hypothetical protein Sca_1238 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421331|emb|CAL28145.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 139 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PAD+I D+++ E E S Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPISFVESIDSE 96 >gi|328886610|emb|CCA59849.1| Rrf2 family transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 160 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + P +++AE +S +L K +Q L +AG+V +V+G+ GG L Sbjct: 6 GVEWALHCCVVLTAASRPVPAARLAELHDVSPSYLAKQMQALSRAGLVRSVQGKTGGYVL 65 Query: 67 CRPADQITILDVVKATE 83 RPA +IT+LDVV+A + Sbjct: 66 TRPAVEITLLDVVQAVD 82 >gi|310780203|ref|YP_003968535.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] gi|309749526|gb|ADO84187.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] Length = 140 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 48/81 (59%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T + YG+ L+Y A + + + ++AE IS+ +L +I L K+GI+ +V+G +GG Sbjct: 4 TNKGHYGLIALIYMAGNIEKKVSVKEVAEKENISKRYLEQIFSALKKSGILISVKGSQGG 63 Query: 64 VRLCRPADQITILDVVKATEE 84 L R +I + DV++A E+ Sbjct: 64 YLLSRSPKEIKVGDVLRALED 84 >gi|88811720|ref|ZP_01126974.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231] gi|88791111|gb|EAR22224.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231] Length = 153 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 56/112 (50%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + + TDYGI +L A +++A+ + + + KIL+ L + GI+ + RG Sbjct: 2 IRINRETDYGISILTLMARRRRERFNAAELAQWRRLPQPIVSKILKHLARNGILISYRGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 +GG L R ++I++ D++ A E + EC C +C +++ R Sbjct: 62 QGGYALARSPEEISLADIIVALEGPISLTECVIGGADACQYGANCAVSARWR 113 >gi|84498351|ref|ZP_00997148.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649] gi|84381851|gb|EAP97734.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649] Length = 155 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ RTDY +R ++ P + +A+ + FL +I+ L AG+V + Sbjct: 1 MDISARTDYAVRAMLILGEAQQAESGPVSVETLAQRQSLPRKFLEEIVADLRTAGLVTST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 RG RGG L RPA + + DV +A + H+ Sbjct: 61 RGARGGYSLARPATETVLGDVFRAVDGPLAEVRGLRPHE 99 >gi|237748047|ref|ZP_04578527.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229379409|gb|EEO29500.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 144 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R M + N D + + IS +L +I L K+G++ +VR Sbjct: 1 MKISTKGRYALR-FMIDLVQNGGDSYTSLKDVTRRQTISPKYLEQIATSLSKSGLILSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVL 111 G +GG +L R ++ T+ D+++ E +F C CP SC GL V+ Sbjct: 60 GPQGGYKLARSPEKYTVADILRPIEGTFACVACLEQTPNACPRYESCSTVHFWEGLHEVM 119 Query: 112 RKALNA 117 LN Sbjct: 120 TNYLNG 125 >gi|85712744|ref|ZP_01043789.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] gi|85693476|gb|EAQ31429.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] Length = 155 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+ P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVAMFAKQAPVPLADISDRQGISLSYLEQLFARLRKRGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 GG RL R AD I++ V+ A +ES +C K +C C LT L + L+ Sbjct: 61 PGGGYRLGRDADSISVGAVIDAVDESIDATKC--QGKGNCHNGEQC-LTHSLWEGLSDRI 117 Query: 117 -AFFDVLT 123 F D +T Sbjct: 118 AQFLDGIT 125 >gi|307151468|ref|YP_003886852.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981696|gb|ADN13577.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7822] Length = 143 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + +Y + L+ A D P +++I I E +L +I L + G++++ R Sbjct: 1 MSLPSKVEYALLALLEMASQPDLKKPLTVNEITAKQPIPERYLEQIFASLRRGGLLKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R IT+L++V E + + E ++ L+ ++A A Sbjct: 61 GSKGGYVLAREPQDITLLEIVSIIEGNRQIKENMDVSTVEMKLIQES-----WQQANQAA 115 Query: 119 FDVLTQYSIECLVRNRSS 136 +L QY++ L + R S Sbjct: 116 QSILGQYTLLDLCKQRES 133 >gi|304321528|ref|YP_003855171.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503] gi|303300430|gb|ADM10029.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503] Length = 134 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 49/98 (50%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 +P + IA +S FL +IL+ L +AG+VE+ RG GG RL R A +I + +VV+A Sbjct: 12 FPVTVQAIAARQRLSAPFLEQILRKLRRAGLVESRRGVNGGYRLARRAAEIPVSEVVRAV 71 Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 EE C + C + LT L L+ + Sbjct: 72 EEEIRSTACQPGAVLGCTGTSARCLTHHLWSGLDRHIE 109 >gi|329934917|ref|ZP_08284958.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces griseoaurantiacus M045] gi|329305739|gb|EGG49595.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces griseoaurantiacus M045] Length = 156 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ D ++A + K++ L G++ RGR Sbjct: 1 MRLLRSTDLALRVLMRLAVAGDSSPTTREVAADMDVPYTHAAKVVAELQHRGLLAARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA-----ECFASHKIDCPLVGSCGLTSVLRKAL 115 GG+ + ++ VV+A E + + E + CPL C L LR+A Sbjct: 61 GGGLSVTEAGRTASVGRVVRAFEGADGGSDVVDCEGGGTGTPPCPLRSDCLLRGALRRAQ 120 Query: 116 NAFFDVLTQYSIECLV 131 AF+ L +++ ++ Sbjct: 121 EAFYASLDPLTVQDMI 136 >gi|205374225|ref|ZP_03227024.1| transcriptional regulator [Bacillus coahuilensis m4-4] Length = 139 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA +SE +L +++ PL AG+V ++RG Sbjct: 1 MKISTKGRYGLTIMIELAKRHGEGPTSLKTIATTHELSEHYLEQLIAPLRNAGLVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT D+++ E E + + +K +A Sbjct: 61 AYGGYVLAMEPKEITAGDIIRVLEGPISPVEGIEDEE--------PAKRELWKKIRDAVK 112 Query: 120 DVLTQYSIECL 130 DVL +IE L Sbjct: 113 DVLDNTTIEDL 123 >gi|42780147|ref|NP_977394.1| hypothetical protein BCE_1071 [Bacillus cereus ATCC 10987] gi|42736065|gb|AAS40002.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 168 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KAGIV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|288961940|ref|YP_003452250.1| transcriptional regulator [Azospirillum sp. B510] gi|288914220|dbj|BAI75706.1| transcriptional regulator [Azospirillum sp. B510] Length = 150 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+++ Y +R L+ A D + I + IAE I FL IL L K G++ RG+ Sbjct: 2 LSQKAKYALRALIMLA-EKDTGDLILIADIAERENIPRKFLEAILVELRKEGLLFAKRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116 GG RL RPA +IT +V++ + C + DC +C + ++ + + Sbjct: 61 SGGYRLARPAAEITFGEVIRLIDGHLAPIPCASKASFRPCEDCIDTATCSVRWLMVQVRD 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140 A VL ++ +R+R S I Sbjct: 121 ATAAVLDNRTLADALRHRQSTGNI 144 >gi|253999553|ref|YP_003051616.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986232|gb|ACT51089.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. SIP3-4] Length = 162 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L ++G+V +VRG Sbjct: 1 MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG + + +I++ +++ A +E +C HK +C C +T L LNA Sbjct: 61 PGGGYLIAKKPGEISVANIIAAADELIDATQC-GGHK-NCRGEKPC-MTHELWSTLNAKI 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 D L+ S+E LV ++S + I Sbjct: 118 LDYLSAVSLEDLVASQSDERAI 139 >gi|256826636|ref|YP_003150595.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256582779|gb|ACU93913.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 150 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ C P + IA+ IS+ +L +++ L GI++ RG Sbjct: 1 MQISTKGRYALRFLLDLCQHQGTGPVPLKDIAQRQGISKKYLEQVIALLNPTGILQVTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 +GG RL + IT+ DV+ TE F +D Sbjct: 61 YQGGYRLAKAPRDITVADVLAVTESGFTAGAASTGTNVDT 100 >gi|90422537|ref|YP_530907.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104551|gb|ABD86588.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisB18] Length = 154 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 49/94 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A H D IAE IS L K+L+ LV+A ++E+VRG Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYAISLNHLAKVLRALVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GG R ++T+LD++ E++ E AS Sbjct: 61 GGGYRFSGNPKRVTLLDIITLFEDTAPDLEQAAS 94 >gi|209525268|ref|ZP_03273810.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima CS-328] gi|209494283|gb|EDZ94596.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima CS-328] Length = 147 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 4/100 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ A+ N P + IA I +L K+L + + G+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLAVLQNQGPISVRAIASRQNIPAPYLEKLLIEMRQRGLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG +L P QI++ +++A E+ E ++H+ D Sbjct: 61 AHGGYQLAYPPAQISLGQILEAVGETI---EPLSNHQPDA 97 >gi|120554049|ref|YP_958400.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120323898|gb|ABM18213.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei VT8] Length = 165 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+ IS +L ++ L + +V +VRG Sbjct: 1 MKLTTKGRYAVTAMLDLALHAGQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD++ + +VV A ES C +K DC C + + Sbjct: 61 PGGGYRLSRSADEVFVAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118 Query: 120 DVLTQYSIECLVR 132 L++ S+ L+R Sbjct: 119 QFLSEISLGDLMR 131 >gi|109897562|ref|YP_660817.1| BadM/Rrf2 family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|332307518|ref|YP_004435369.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109699843|gb|ABG39763.1| transcriptional regulator, BadM/Rrf2 family [Pseudoalteromonas atlantica T6c] gi|332174847|gb|AEE24101.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 161 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 13/152 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQRGPVSLADISERQEISLSYLEQLFSRLRREKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG +L R I I +V++A +ES C + DC C L L + ++ Sbjct: 61 PGGGYKLGRQPSDIPIGEVIRAVDESVDATRCQG--QSDCQGGERCLTHSLWQDLSERIS 118 Query: 117 AFFDVLT------QYSIECLVRNRSSIKKIFN 142 F D +T Q+ ++ LV +R K N Sbjct: 119 LFLDGITLGELMAQHDVK-LVADRQDKTKHLN 149 >gi|315924880|ref|ZP_07921097.1| Rrf2 family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621779|gb|EFV01743.1| Rrf2 family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 148 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI ++ + + + + + +AE IS+++L +I L ++G+V +V+ Sbjct: 1 MRISAKGRYGIASMIELSWMSREGHHVPVAILAENLGISKIYLEQIFSLLKRSGLVASVK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87 G +GG L +PA +I++ +++KA E+ F Sbjct: 61 GAQGGYHLAKPASEISVYEILKALEQILF 89 >gi|157691453|ref|YP_001485915.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680211|gb|ABV61355.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 145 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 2/125 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSATYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + + I+ LDV++A E + C H P G C + ++ Sbjct: 61 AKGGYTILKKKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHNG-CLIEQAMQDVETKMQ 119 Query: 120 DVLTQ 124 + L+Q Sbjct: 120 ETLSQ 124 >gi|332655322|ref|ZP_08421062.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] gi|332515827|gb|EGJ45437.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] Length = 142 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R Y +RV++ A H +D + ++A+ IS +L +I+ L K +VE V G+ Sbjct: 2 ISTRGRYALRVMIDLAEHADDGYIPMKEVAQRQGISLKYLERIMPALSKNNLVEGVHGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALNAF 118 GG RL R + T ++++ E S C C +C ++ +K +N + Sbjct: 62 GGYRLSRKPEDYTAGEILRLVEGSLAPVACLECGAEPCSRQDTCKTIAMWKKFYDLVNGY 121 Query: 119 FDVLT 123 FD +T Sbjct: 122 FDHIT 126 >gi|323440820|gb|EGA98529.1| Rrf2 family protein [Staphylococcus aureus O11] Length = 117 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++I+ D+++ E E S Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96 >gi|313201580|ref|YP_004040238.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688] gi|312440896|gb|ADQ85002.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. MP688] Length = 162 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L ++G+V +VRG Sbjct: 1 MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG + + +I++ +++ A +E +C HK +C C +T L LNA Sbjct: 61 PGGGYLIAKKPGEISVANIIAAADELIDATQC-GGHK-NCRGEKPC-MTHELWSTLNAKI 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 D L+ S+E LV ++S + I Sbjct: 118 LDYLSAVSLEDLVASQSDERAI 139 >gi|257065352|ref|YP_003145024.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256793005|gb|ACV23675.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 133 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++ A + P + +AE IS +L ++ +PLV + ++ + RG Sbjct: 1 MLVSTKGRYAMRLMTDVARYQCLGPVPLRDVAERENISVKYLEQLARPLVHSDLLHSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116 + GG RL RPA +I D+++A E + C + DCP C + L + + Sbjct: 61 KGGGYRLTRPASEIKAGDILRAAEGTTIPVACNGLLE-DCPRTTECASINFWVGLDRVIE 119 Query: 117 AFFDVLTQYSI 127 + D +T I Sbjct: 120 DYVDAVTLADI 130 >gi|37525899|ref|NP_929243.1| hypothetical protein plu1977 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785328|emb|CAE14270.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 154 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L A+H+ R IA++ + + ++L L +AG+ + G+ Sbjct: 1 MPTSTRFAVAIHILTDIALHHGQAVRSEDIAKSVNTNPTVVRRLLGALAEAGLTYSQMGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA--------ECFASHKI 97 GG L RP++QI++LD+ +A E+ + +C+ H I Sbjct: 61 GGGALLARPSNQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNI 105 >gi|82702897|ref|YP_412463.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410962|gb|ABB75071.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira multiformis ATCC 25196] Length = 156 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ T Y I+ L+Y A +++ IAE +L KILQ L K ++ + RG Sbjct: 1 MILSRTTQYAIQALIYMATQPPGVAVLNRTIAECLRSPPTYLAKILQELCKGNLLYSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPL 101 ++GG L +D+I ++ +V+ TE F +C K+ CP+ Sbjct: 61 KQGGFCLRESSDKINLMQIVRITEGPGFTEDCVLGLKVCSDTTACPM 107 >gi|328880478|emb|CCA53717.1| Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces venezuelae ATCC 10712] Length = 151 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R + A D P + IAE IS FL IL + K G+V++ RG Sbjct: 1 MRISARADYAVRAALQLAAAQDAGPLKAEAIAEDQGISHKFLEGILGDMRKGGLVQSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 GG L RPA+ I++ +V++ Sbjct: 61 GNGGYWLARPAESISVAEVIR 81 >gi|238750360|ref|ZP_04611861.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC 43380] gi|238711291|gb|EEQ03508.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC 43380] Length = 185 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A +I + V+ A +ES C Sbjct: 82 PGGGYLLGKDASEIAVGAVITAVDESVDATRC 113 >gi|254427452|ref|ZP_05041159.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax sp. DG881] gi|196193621|gb|EDX88580.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax sp. DG881] Length = 156 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 3 MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R ++QI + V+ A +ES C H DC +C Sbjct: 63 PGGGYQLSRESEQIDVAAVIAAVDESVDATRC-GGHG-DCQEGDTC 106 >gi|158313027|ref|YP_001505535.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EAN1pec] gi|158108432|gb|ABW10629.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EAN1pec] Length = 151 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 50/83 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A + + +A A + FL IL L ++G+V++ RG Sbjct: 1 MQISARADYALRALLTLAASDGSLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG +LCRPA++ITI V++AT+ Sbjct: 61 DGGYQLCRPAEEITIATVIRATD 83 >gi|298290870|ref|YP_003692809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296927381|gb|ADH88190.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 149 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT R YG++ +++ A + Q IA+A I + FL IL L AG++ + +G Sbjct: 2 LTNRGKYGLKAMLHLAAQPPGTSLGGQEIADANNIPKKFLDAILLDLRHAGMLRSRKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L R D I + +++ + C + DC VGSC + + K +A Sbjct: 62 GGYTLARSIDDIRVGHIIRVLDGPLAPIGCASKSAYVPCQDCRDVGSCAVRITMTKVRDA 121 Query: 118 FFDVLTQYSI 127 +VL + S+ Sbjct: 122 ISEVLDRMSL 131 >gi|239916899|ref|YP_002956457.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414646|ref|ZP_06246388.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239838106|gb|ACS29903.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 157 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD +RVLM A QIA+ + + K + L + G +E +RGR Sbjct: 1 MKLSAYTDVCLRVLMTLAAAEGERVTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNAF 118 GG + + ++V+A V +C A H+ + CP C L L +A AF Sbjct: 61 NGGATIAEAGLDQRVGELVRALSSRDEVIDC-AGHETGVPCPFAADCRLREALARAREAF 119 Query: 119 FDVLTQYSIECLVR 132 L ++ LVR Sbjct: 120 MAELDLLTVRDLVR 133 >gi|127513246|ref|YP_001094443.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica PV-4] gi|126638541|gb|ABO24184.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica PV-4] Length = 153 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL A I++ VV+A +ES C Sbjct: 61 PGGGYRLGFDASDISVGMVVRAVDESVDATRC 92 >gi|296328218|ref|ZP_06870749.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154730|gb|EFG95516.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 142 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 15/136 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + NRI ++IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQD--KNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114 +G GG +L + IT+ D V+ E+ + + C SC + L K Sbjct: 59 KGANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVVGQ-------TSCSIIFEALEKV 111 Query: 115 LNAFFDVLTQYSIECL 130 N F + L + + + L Sbjct: 112 ENNFLNNLEKVNFQEL 127 >gi|75909333|ref|YP_323629.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703058|gb|ABA22734.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis ATCC 29413] Length = 147 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA+ I +L K+L + +AG+V+++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG +L R +I+I +++A +E+ Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDET 86 >gi|19704428|ref|NP_603990.1| hypothetical protein FN1093 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714688|gb|AAL95289.1| Hypothetical protein FN1093 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 142 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 15/136 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + NRI ++IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQD--KNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114 +G GG +L + IT+ D V+ E+ + + C SC + L K Sbjct: 59 KGANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVVGQ-------TSCSIIFEALEKV 111 Query: 115 LNAFFDVLTQYSIECL 130 N F + L + + + L Sbjct: 112 ENNFLNNLEKVNFQEL 127 >gi|271501586|ref|YP_003334612.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii Ech586] gi|270345141|gb|ACZ77906.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech586] Length = 164 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDSAEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNR 134 + L +++ LV N+ Sbjct: 119 EFLNNITLDELVNNK 133 >gi|254302940|ref|ZP_04970298.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323132|gb|EDK88382.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 141 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L +I + + K ++ V +C K CG T + K N Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYKILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L++ S++ + N I Sbjct: 121 AMTKILSETSLQDFINNGKKI 141 >gi|327394815|dbj|BAK12237.1| Rrf2 family protein YfhP [Pantoea ananatis AJ13355] Length = 165 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + A+ I + +V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKEANAIAVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117 Query: 119 FDVLTQYSIECLVRNR 134 + L ++ LV N+ Sbjct: 118 SEFLNNITLAELVNNQ 133 >gi|291618422|ref|YP_003521164.1| YfhP [Pantoea ananatis LMG 20103] gi|291153452|gb|ADD78036.1| YfhP [Pantoea ananatis LMG 20103] Length = 170 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 6 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + A+ I + +V+ A +ES +C K C C LT VL + L+ Sbjct: 66 PGGGYLLGKEANAIAVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 122 Query: 119 FDVLTQYSIECLVRNR 134 + L ++ LV N+ Sbjct: 123 SEFLNNITLAELVNNQ 138 >gi|257063216|ref|YP_003142888.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] gi|256790869|gb|ACV21539.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] Length = 136 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R+ Y + V++ A + + +IA+ ISE +L IL+ LVK G + VRG Sbjct: 1 MLFSTRSQYALSVMVDLAERQAEGYTPLKEIADRQGISEKYLESILKVLVKNGFLIGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 + GG +L R D T+ DV++ TE+S Sbjct: 61 KGGGYKLTRNPDLYTVGDVLRLTEDSL 87 >gi|169831709|ref|YP_001717691.1| BadM/Rrf2 family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638553|gb|ACA60059.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Desulforudis audaxviator MP104C] Length = 151 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YG R L+ A H+ + P + IA +S+ +L +++ L AG+V ++RG Sbjct: 1 MRVSTRVRYGTRALVDIAEHHGNGPVCLRDIARRQKVSQPYLEQLILLLKAAGLVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L R +I++++V+ V +C C G+CG+ + +A Sbjct: 61 ARGGFVLARDPAEISMIEVMTTLGWESEVVDCVGDPG-SCSRAGACGMRDFWCRLSDAVS 119 Query: 120 DVLTQYSIECLVRNRS 135 V+ ++ L++ ++ Sbjct: 120 KVVGSTTLADLMQEQA 135 >gi|154503668|ref|ZP_02040728.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149] gi|153795768|gb|EDN78188.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149] Length = 486 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR++ Y A N ++++ I ++ KI + L + IV+ G Sbjct: 1 MQLTNTTDYAIRIVCYLASENKVIT-TAELSRELNIPASYIPKITKQLKEKEIVKAAEGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L + ++I+++DV+ TE + ++ C Sbjct: 60 NGGYMLEKRPEEISLMDVINCTESTMAISRCL 91 >gi|110636622|ref|YP_676829.1| BadM/Rrf2 family transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279303|gb|ABG57489.1| transcriptional regulator, BadM/Rrf2 family [Cytophaga hutchinsonii ATCC 33406] Length = 140 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+ Y ++ L++ + + D I++I+E I + FL +IL L K GI+++ RG+ Sbjct: 2 LSKKAKYALKALLFLSKNTDRGVVLIAEISETEGIPKKFLEQILLELKKQGILQSKRGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA++I I VV+ + C + +C +C + ++ + +A Sbjct: 62 GGYFLGKPANEIGIGQVVRIIDGPLAPIPCVSKMAYRRCDECIDEKTCEIRNLFLQVRDA 121 Query: 118 FFDVLTQYSIECL 130 ++L + S+ L Sbjct: 122 TIEILDKTSLSDL 134 >gi|317057079|ref|YP_004105546.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315449348|gb|ADU22912.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 149 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R +YGI L AI+ N S I+E IS+ +L +I+ L + G V+ + Sbjct: 1 MKISTRVEYGIIALADIAINGANGKTVSSSDISERQDISQKYLEQIIISLRQGGFVKGQK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALN 116 G RGG L RPA++I + +++ A + S S + + S C L + + Sbjct: 61 GSRGGYMLSRPAEKIYLSEILNALDNSILADAYEESEENTAGMRNSVNCCLWDKINSYMR 120 Query: 117 AFFDVLT 123 +F + +T Sbjct: 121 SFTEQMT 127 >gi|257452761|ref|ZP_05618060.1| hypothetical protein F3_06819 [Fusobacterium sp. 3_1_5R] gi|257466870|ref|ZP_05631181.1| hypothetical protein FgonA2_05470 [Fusobacterium gonidiaformans ATCC 25563] gi|315918018|ref|ZP_07914258.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059302|ref|ZP_07923787.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684978|gb|EFS21813.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313691893|gb|EFS28728.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 137 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L+Y + + +R+ ++I+E I LF +IL+ + KAG++ Sbjct: 1 MRLKNEVEYVFRILLYLSKYG--KDRVISSTEISEKEQIPHLFSLRILKKMEKAGLLSIQ 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALN 116 +G +GG L + IT+ ++ E V +C + K C L G C + + Sbjct: 59 KGAKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVSDPK-SCSLRGGRCSVHRAMALIEK 117 Query: 117 AFFDVLTQYSIECL 130 F + L +Y+ + L Sbjct: 118 EFIEHLAKYNFQDL 131 >gi|237746485|ref|ZP_04576965.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229377836|gb|EEO27927.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 154 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 IS +L +I L KAG++++VRG +GG +L R + TI D+++ E + C + Sbjct: 37 ISPKYLEQIATALGKAGLIQSVRGPQGGYKLSRQPESYTIGDILRPIEGNLACVACLETT 96 Query: 96 KIDCPLVGSC-------GLTSVLRKALNA 117 +CP +C GL V+ LN+ Sbjct: 97 PNECPQYANCTAVRFWEGLHHVVLNYLNS 125 >gi|289167875|ref|YP_003446144.1| transcriptional regulator [Streptococcus mitis B6] gi|288907442|emb|CBJ22279.1| transcriptional regulator [Streptococcus mitis B6] Length = 158 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + I VL+ Y N IS ++E +S+ +L KI++ L G+V++VR Sbjct: 1 MRLSSGWEQSIYVLLMLDQLAKGKYINTIS-LSERLEVSDSYLKKIIKLLDNEGLVKSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G+ GGV L +P QIT DV A E Sbjct: 60 GKNGGVALSKPLSQITFYDVFVAIE 84 >gi|229062524|ref|ZP_04199837.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] gi|228716807|gb|EEL68498.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] Length = 168 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M + +Y + L+Y P++ I +AE +SE FL K+ L KAGIV + Sbjct: 1 MQYSVGVEYALHCLVYLVTA---PSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 V G +GG RL + + I+ DV++A E + +C Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|108800879|ref|YP_641076.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS] gi|119870019|ref|YP_939971.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS] gi|126436505|ref|YP_001072196.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS] gi|108771298|gb|ABG10020.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS] gi|119696108|gb|ABL93181.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS] gi|126236305|gb|ABN99705.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS] Length = 162 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATADDGVLVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 R GG L RPA I+I DV++ + D P G + LT V R + Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118 Query: 119 FDVLTQYSI 127 VL Q S+ Sbjct: 119 RSVLEQTSL 127 >gi|67923935|ref|ZP_00517390.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501] gi|67854203|gb|EAM49507.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501] Length = 147 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ +Y P + IA+ + +L K+L + + G+V ++RG Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQELPAPYLEKLLIEMRRNGLVNSLRG 60 Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86 RGG +L R +I+ ILD V T E Sbjct: 61 SRGGYQLARQPSEISLGQILDAVGETIEPL 90 >gi|257464248|ref|ZP_05628627.1| hypothetical protein FuD12_10461 [Fusobacterium sp. D12] gi|317061765|ref|ZP_07926250.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313687441|gb|EFS24276.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 136 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L+Y + + RI ++I+E I LF +IL+ + KAG+V Sbjct: 1 MRLKNEVEYVFRILLYLSRYG--KERIISSTEISEKEQIPHLFSLRILKKMEKAGLVSIQ 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALN 116 +G +GG L + IT+ ++ E V +C K C L G C + + Sbjct: 59 KGAKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVRDPK-SCSLRSGRCSVHRAMAVIEK 117 Query: 117 AFFDVLTQYSIECL 130 F + L +Y+ + L Sbjct: 118 EFIEHLAKYNFQDL 131 >gi|222151511|ref|YP_002560667.1| hypothetical protein MCCL_1264 [Macrococcus caseolyticus JCSC5402] gi|222120636|dbj|BAH17971.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 140 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ +++ A D +S IAE +S+L+L +++ PL AG++++VR Sbjct: 1 MKISTKGRYGLTLMISLAKRYDKGETVSLKTIAEENHLSDLYLEQLVGPLRNAGLIKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG +L + ++T ++++ E E D P L +R A+ Sbjct: 61 GARGGYKLMKHPKEVTTSEIIRLLEGPITPVEGIE----DEP-PAQKQLWIDIRDAVKKV 115 Query: 119 FDVLTQYSI 127 D T Y + Sbjct: 116 LDETTLYDL 124 >gi|325676175|ref|ZP_08155855.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325552959|gb|EGD22641.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 148 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R++M A S +AE +S K++ L + G+V T R Sbjct: 1 MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ + ++ + + E V C CPL C L S LR A +AF Sbjct: 61 GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDKP--CPLRRGCRLRSSLRVAQDAF 118 Query: 119 FDVLTQYSIECL 130 + L ++ L Sbjct: 119 YTALDAMTVRDL 130 >gi|257789851|ref|YP_003180457.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|325832443|ref|ZP_08165396.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] gi|257473748|gb|ACV54068.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|325486004|gb|EGC88460.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] Length = 158 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDYG+R ++Y A + IAE I +L ++ Q L AGI+E G+ Sbjct: 1 MQLKASTDYGMRAILYLAAQGTTCSS-KDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59 Query: 61 RGGVRLCR-PADQITILDVVKATEES 85 GG RL + PAD +L++++A ++ Sbjct: 60 HGGYRLAKDPAD-TNVLEIMEALDDD 84 >gi|114563595|ref|YP_751108.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella frigidimarina NCIMB 400] gi|114334888|gb|ABI72270.1| transcriptional regulator, BadM/Rrf2 family [Shewanella frigidimarina NCIMB 400] Length = 153 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSATGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV A +ES C K +C C S+ Sbjct: 61 PGGGYRLGLEAVDISVGMVVHAVDESVDATRCQG--KGNCQSGTRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L++ R Sbjct: 119 DFLDGISLAGLMQKR 133 >gi|317489305|ref|ZP_07947819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|316911550|gb|EFV33145.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] Length = 158 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDYG+R ++Y A + IAE I +L ++ Q L AGI+E G+ Sbjct: 1 MQLKASTDYGMRAILYLAAQGTTCSS-KDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59 Query: 61 RGGVRLCR-PADQITILDVVKATEES 85 GG RL + PAD +L++++A ++ Sbjct: 60 HGGYRLAKDPAD-TNVLEIMEALDDD 84 >gi|152983079|ref|YP_001352722.1| transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283156|gb|ABR91566.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 185 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRG 59 +++ +YG+ L++ + S +AE + FL K+ LVKAG+V + G Sbjct: 3 YISSGVEYGLHCLLFLTRSSAAVEEASVRDLAELQGVPHDFLAKLFTKLVKAGLVVSTEG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110 +GGVRL R ++IT+ DV+ A + + +C F S+ G C + +V Sbjct: 63 VKGGVRLARLPERITVHDVIVAIDGDKSLFDCREIRGRCAVFDSNAPAWATRGVCSIDAV 122 Query: 111 LRKALNAFFDVLTQYSIECLVR 132 ++ A A L Q+++ L + Sbjct: 123 MQLAEKAMRAELKQHTLADLAQ 144 >gi|169350929|ref|ZP_02867867.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552] gi|169291991|gb|EDS74124.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552] Length = 148 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y +R+++ AIH+D P + IA+ ++ +L +I+ L KAG ++++ Sbjct: 1 MKISTKGRYALRIMLDIAIHDDGKYIP--LKDIAKRQNLTVKYLEQIISLLNKAGYLQSL 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KA 114 RG GG RL + D+ + D+++ TE C C C R + Sbjct: 59 RGNTGGYRLAKNLDEYVVGDILRVTEGDLAPVACLKKCGDFCQREDICNTVLFWRGLDRV 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140 +N + D T + +++ + KK+ Sbjct: 119 INEYVDSYTLKDLLEQSQDKDNNKKL 144 >gi|310815934|ref|YP_003963898.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium vulgare Y25] gi|308754669|gb|ADO42598.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium vulgare Y25] Length = 142 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 5/111 (4%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + +I++ IS +L ++ L +A +VE+ RG GG +L RP DQI++ D+++A +E+ Sbjct: 18 LGEISKRQDISLPYLEQLFVKLRRADLVESARGPGGGYKLARPMDQISVADILEAVDET- 76 Query: 87 FVAECFASHKIDCPLVGS--CGLTSVLRKALNA-FFDVLTQYSIECLVRNR 134 V+ + L GS LT+ L + L+A + L Q + +V+NR Sbjct: 77 -VSAMHKGAGVSGGLSGSRAQSLTNRLWEGLSAQVYVFLHQTKLSDIVKNR 126 >gi|302387262|ref|YP_003823084.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197890|gb|ADL05461.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A H ND + I++ IS+ +L +I+ L ++ ++ T RG Sbjct: 1 MKISTRGRYSLRMMIDLAEHYNDEFIALKDISKRQNISKKYLEQIVPFLNRSNLLTTYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 GG +L R QITI D++ ++E S C + C C GL+ V+ Sbjct: 61 HMGGYKLARHPSQITIGDILLSSEGSLNPVSCMDNDPSICARQEDCLTLPIWQGLSEVIA 120 Query: 113 KALNAF 118 LN Sbjct: 121 DYLNGI 126 >gi|332708195|ref|ZP_08428185.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L] gi|332353021|gb|EGJ32571.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L] Length = 147 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 4/100 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA+ + +L K+L + +AG+V++VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLRPGYGPTSVRAIAKRQGLPAPYLEKLLIEMRRAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 +GG +L QI++ +++A E+ E H D Sbjct: 61 AQGGYQLAHEPTQISLGKILEAVGETI---EPLPHHTPDA 97 >gi|317131673|ref|YP_004090987.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] gi|315469652|gb|ADU26256.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A+H D + + IA+ IS +L ++ L KAG V +V+G Sbjct: 1 MKLSTKGRYGLRALLDLAVHADGSHVSLYNIADRQQISVNYLEQVFSQLRKAGFVRSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89 +GG L ++TI +++ E S +A Sbjct: 61 AQGGYALAMQPQEMTIGGILRVLEGSLHIA 90 >gi|310826117|ref|YP_003958474.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308737851|gb|ADO35511.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 148 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + YG+ ++ A DY I IAE +S+++L ++ L +AG+V +V Sbjct: 1 MRISAKGRYGLAAMIAIAQGDFEGDYVPVIV-IAEKLGLSKIYLEQVFSLLKRAGLVNSV 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFF 87 +G +GG RL R DQI +++ A E+ F Sbjct: 60 KGAQGGYRLTREPDQINAHEILTALEQILF 89 >gi|34763033|ref|ZP_00144008.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742023|ref|ZP_04572504.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256845364|ref|ZP_05550822.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294785339|ref|ZP_06750627.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] gi|27887293|gb|EAA24389.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429671|gb|EEO39883.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718923|gb|EEU32478.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294487053|gb|EFG34415.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] Length = 141 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + +RI ++IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQD--KDRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114 +G GG +L R IT+ D V+ E+ + + C A SC + L K Sbjct: 59 KGANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCIAGQ-------TSCSIIFGALEKV 111 Query: 115 LNAFFDVLTQYSIECLV 131 N F L + + + L Sbjct: 112 ENNFLKNLEKVNFKELT 128 >gi|229013707|ref|ZP_04170836.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048] gi|229062189|ref|ZP_04199513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] gi|229135339|ref|ZP_04264130.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196] gi|229169232|ref|ZP_04296946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621] gi|228614298|gb|EEK71409.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621] gi|228648114|gb|EEL04158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196] gi|228717172|gb|EEL68848.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] gi|228747629|gb|EEL97503.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048] Length = 151 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 10/146 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114 +GG L R D+IT+LDV KA E E + + I+CP+ + SVL ++ Sbjct: 68 KGGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPV--GANIQSVLEIILIQS 125 Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139 A +VL +++ LV N +S IK+ Sbjct: 126 QEAMENVLANVTVQQLVTNLKSKIKE 151 >gi|159184477|ref|NP_353841.2| hypothetical protein Atu0819 [Agrobacterium tumefaciens str. C58] gi|159139787|gb|AAK86626.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 146 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++ Y +R L+ A + P +IS IA I + FL +IL + K IVE+ RG++ Sbjct: 2 ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA IT +V++ + C + DC C + V + +A Sbjct: 62 GGYLLARPASDITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 121 Query: 118 FFDVLTQYSI 127 ++L ++ Sbjct: 122 TRNILFNTTV 131 >gi|163942239|ref|YP_001647123.1| BadM/Rrf2 family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864436|gb|ABY45495.1| transcriptional regulator, BadM/Rrf2 family [Bacillus weihenstephanensis KBAB4] Length = 143 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 10/146 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114 +GG L R D+IT+LDV KA E E + + I+CP+ + SVL ++ Sbjct: 60 KGGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPV--GANIQSVLEIILIQS 117 Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139 A +VL +++ LV N +S IK+ Sbjct: 118 QEAMENVLANVTVQQLVTNLKSKIKE 143 >gi|86141875|ref|ZP_01060399.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217] gi|85831438|gb|EAQ49894.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217] Length = 137 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A H + P +I IA++ IS+ FL I+ L KAG + + +G+ Sbjct: 2 LSKKTKYGLKALAYVAKHKGEDPVQIGAIAKSENISQKFLESIMLTLRKAGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L R ++I +++V++ E + C F DCP +C + S++ + ++ Sbjct: 62 GGYYLRRQPEEIKMVEVMRILEGPVSMVPCVSLNFYEKCDDCPDETTCSVHSLMVQLRDS 121 Query: 118 FFDVLTQYSIECLV 131 VL + ++ L+ Sbjct: 122 NLAVLNKNTLADLI 135 >gi|15924616|ref|NP_372150.1| hypothetical protein SAV1626 [Staphylococcus aureus subsp. aureus Mu50] gi|15927206|ref|NP_374739.1| hypothetical protein SA1453 [Staphylococcus aureus subsp. aureus N315] gi|21283305|ref|NP_646393.1| hypothetical protein MW1576 [Staphylococcus aureus subsp. aureus MW2] gi|49483871|ref|YP_041095.1| hypothetical protein SAR1706 [Staphylococcus aureus subsp. aureus MRSA252] gi|49486459|ref|YP_043680.1| hypothetical protein SAS1562 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650508|ref|YP_186521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL] gi|82751225|ref|YP_416966.1| hypothetical protein SAB1496c [Staphylococcus aureus RF122] gi|87161573|ref|YP_494278.1| hypothetical protein SAUSA300_1583 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268107|ref|YP_001247050.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394175|ref|YP_001316850.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus JH1] gi|151221740|ref|YP_001332562.1| hypothetical protein NWMN_1528 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979944|ref|YP_001442203.1| hypothetical protein SAHV_1613 [Staphylococcus aureus subsp. aureus Mu3] gi|221141104|ref|ZP_03565597.1| hypothetical protein SauraJ_05628 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314983|ref|ZP_04838196.1| hypothetical protein SauraC_02182 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732283|ref|ZP_04866448.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733122|ref|ZP_04867287.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006412|ref|ZP_05145013.2| hypothetical protein SauraM_08085 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425750|ref|ZP_05602174.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428410|ref|ZP_05604808.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431048|ref|ZP_05607427.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433734|ref|ZP_05610092.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436649|ref|ZP_05612693.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257793700|ref|ZP_05642679.1| Rrf2 family protein [Staphylococcus aureus A9781] gi|258411001|ref|ZP_05681281.1| Rrf2 family protein [Staphylococcus aureus A9763] gi|258420198|ref|ZP_05683153.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719] gi|258424052|ref|ZP_05686934.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258438199|ref|ZP_05689483.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299] gi|258443662|ref|ZP_05692001.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446869|ref|ZP_05695023.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300] gi|258448783|ref|ZP_05696895.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258450547|ref|ZP_05698609.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453602|ref|ZP_05701580.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262048619|ref|ZP_06021502.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30] gi|262051277|ref|ZP_06023501.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3] gi|269203252|ref|YP_003282521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98] gi|282893129|ref|ZP_06301363.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8117] gi|282904206|ref|ZP_06312094.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160] gi|282906032|ref|ZP_06313887.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908946|ref|ZP_06316764.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911263|ref|ZP_06319065.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WBG10049] gi|282914431|ref|ZP_06322217.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899] gi|282916894|ref|ZP_06324652.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus D139] gi|282919400|ref|ZP_06327135.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C427] gi|282920174|ref|ZP_06327899.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9765] gi|282924725|ref|ZP_06332393.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C101] gi|282928260|ref|ZP_06335865.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A10102] gi|283770700|ref|ZP_06343592.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus H19] gi|283958386|ref|ZP_06375837.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024683|ref|ZP_06379081.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 132] gi|293503505|ref|ZP_06667352.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus 58-424] gi|293510523|ref|ZP_06669229.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus M809] gi|293531063|ref|ZP_06671745.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015] gi|294848656|ref|ZP_06789402.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9754] gi|295406748|ref|ZP_06816553.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8819] gi|295428202|ref|ZP_06820834.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275912|ref|ZP_06858419.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MR1] gi|297207653|ref|ZP_06924088.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590830|ref|ZP_06949468.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911735|ref|ZP_07129178.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380777|ref|ZP_07363444.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701424|dbj|BAB42718.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247397|dbj|BAB57788.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204745|dbj|BAB95441.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49242000|emb|CAG40697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244902|emb|CAG43363.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284694|gb|AAW36788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL] gi|82656756|emb|CAI81185.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|87127547|gb|ABD22061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741176|gb|ABQ49474.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus JH9] gi|149946627|gb|ABR52563.1| putative transcriptional regulator, Rrf2 family [Staphylococcus aureus subsp. aureus JH1] gi|150374540|dbj|BAF67800.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722079|dbj|BAF78496.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724072|gb|EES92801.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728878|gb|EES97607.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257271444|gb|EEV03590.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275251|gb|EEV06738.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278251|gb|EEV08893.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281827|gb|EEV11964.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284000|gb|EEV14123.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257787672|gb|EEV26012.1| Rrf2 family protein [Staphylococcus aureus A9781] gi|257840151|gb|EEV64615.1| Rrf2 family protein [Staphylococcus aureus A9763] gi|257843909|gb|EEV68303.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719] gi|257845673|gb|EEV69705.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848243|gb|EEV72234.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299] gi|257851068|gb|EEV75011.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854444|gb|EEV77393.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300] gi|257858061|gb|EEV80950.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257861705|gb|EEV84504.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864333|gb|EEV87083.1| transcriptional regulator [Staphylococcus aureus A5937] gi|259160914|gb|EEW45934.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3] gi|259163266|gb|EEW47825.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30] gi|262075542|gb|ACY11515.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98] gi|269941112|emb|CBI49498.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282313560|gb|EFB43955.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C101] gi|282317210|gb|EFB47584.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C427] gi|282319381|gb|EFB49733.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus D139] gi|282321612|gb|EFB51937.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899] gi|282324958|gb|EFB55268.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WBG10049] gi|282327210|gb|EFB57505.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331324|gb|EFB60838.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590067|gb|EFB95149.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A10102] gi|282594522|gb|EFB99507.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9765] gi|282595824|gb|EFC00788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160] gi|282764447|gb|EFC04573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8117] gi|283460847|gb|EFC07937.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus H19] gi|283470903|emb|CAQ50114.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ST398] gi|283790535|gb|EFC29352.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285817308|gb|ADC37795.1| Iron-sulfur cluster regulator IscR [Staphylococcus aureus 04-02981] gi|290920331|gb|EFD97397.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015] gi|291095171|gb|EFE25436.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus 58-424] gi|291466887|gb|EFF09407.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus M809] gi|294824682|gb|EFG41105.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9754] gi|294968495|gb|EFG44519.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8819] gi|295128560|gb|EFG58194.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887670|gb|EFH26568.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575716|gb|EFH94432.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694906|gb|ADI98128.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300885981|gb|EFK81183.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333300|gb|ADL23493.1| putative transcriptional regulator, Rrf2 family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751455|gb|ADL65632.1| putative transcriptional regulator, Rrf2 family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340653|gb|EFM06586.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437906|gb|ADQ76977.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830013|emb|CBX34855.1| rrf2 family protein (transcriptional regulator) family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129908|gb|EFT85898.1| hypothetical protein CGSSa03_02453 [Staphylococcus aureus subsp. aureus CGS03] gi|315195526|gb|EFU25913.1| hypothetical protein CGSSa00_07665 [Staphylococcus aureus subsp. aureus CGS00] gi|315198676|gb|EFU29004.1| hypothetical protein CGSSa01_09149 [Staphylococcus aureus subsp. aureus CGS01] gi|320140487|gb|EFW32341.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144026|gb|EFW35795.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323442831|gb|EGB00456.1| Rrf2 family protein [Staphylococcus aureus O46] gi|329314301|gb|AEB88714.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus T0131] gi|329727351|gb|EGG63807.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus subsp. aureus 21172] gi|329728427|gb|EGG64864.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus subsp. aureus 21189] gi|329733167|gb|EGG69504.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus subsp. aureus 21193] Length = 140 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++I+ D+++ E E S Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96 >gi|119491073|ref|ZP_01623231.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106] gi|119453618|gb|EAW34778.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106] Length = 144 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ ++ Y + L+ H + P +I QIA I E +L ++L L ++GIV + R Sbjct: 1 MELSCKSQYAVLALLELTAHYPHGEPRQIRQIARQHHIPERYLEQLLATLKRSGIVRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L + +IT+ DVV E S HK + S + V +A Sbjct: 61 GAKGGYLLAKEPWKITLFDVVVCLEGSNSSPNRNRHHKS----LESLIVDEVWEEAHQMA 116 Query: 119 FDVLTQYSIECL 130 +L +Y+++ L Sbjct: 117 NSILQKYTLQDL 128 >gi|297245670|ref|ZP_06929535.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8796] gi|297177321|gb|EFH36573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8796] Length = 140 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++I+ D+++ E E S Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96 >gi|224372917|ref|YP_002607289.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola AmH] gi|223589916|gb|ACM93652.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola AmH] Length = 138 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T Y + L+ + D P ++ +AE + + FL K+LQ L + G V++ +G Sbjct: 1 MLFTKSTAYTLHALVELS-KFDKPVDVTHLAEITELPKPFLAKLLQTLSRKGFVKSFKGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118 GG L + I I+D+ + E+ + +S DC C + F Sbjct: 60 HGGFILSKEPKDIKIIDIFRVMEDKNSLVFYCSSDPDDCMRGRANICSIRPFFAFLEEEF 119 Query: 119 FDVLTQYSIECLVRNRS 135 ++ Y++E ++R +S Sbjct: 120 LKIVQNYTLEDVIRMKS 136 >gi|284049281|ref|YP_003399620.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] gi|283953502|gb|ADB48305.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] Length = 140 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI+ I +++ ISE +L +I+ L +A +V++ RG Sbjct: 1 MKISTKGRYALRLMIDLAINGTESYVPIKSVSQRQEISEKYLEQIITQLSRAKLVKSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R T ++++A E S C C C + ++ +A Sbjct: 61 AQGGYKLVRDPKDYTAGEILRAVEGSLAPVACLEPGHAICDRAAHCVTLDLWKEIQDAID 120 Query: 120 DVLTQYSIECLVRNRS 135 +++ ++E LV+ + Sbjct: 121 NIVDNTTLEDLVKKQE 136 >gi|266624781|ref|ZP_06117716.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] gi|288863341|gb|EFC95639.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] Length = 139 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ A D + +IA ISE +L +++ LV+ ++ +RG Sbjct: 1 MMISTRGRYALRVMLDLAQQTTDRYVPLKEIANRQEISEKYLEIVIKVLVQNKLLTGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 + GG RL R + T+ ++++ TE S C +C G C + L K +N Sbjct: 61 KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACAEESYTECSRRGFCLSRPVWQELDKIIN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 EYLDGIT 127 >gi|330994034|ref|ZP_08317964.1| Protein aau3 [Gluconacetobacter sp. SXCC-1] gi|329758980|gb|EGG75494.1| Protein aau3 [Gluconacetobacter sp. SXCC-1] Length = 153 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 10/126 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY + L+ + ++ + I E + K+L+ L GIV + RG Sbjct: 2 LKLSKLTDYAVVALVRLGQKEEVTTS-PVLSRSTGIPEPTVAKVLKILATQGIVTSQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-------TSVLRK 113 RGG RL P ++I+I V++A + + C DC +CGL + +R Sbjct: 61 RGGYRLAHPLEEISIAAVIEAIDGPISLTTCVDGG--DCDARSTCGLGGEWDLVNTAIRN 118 Query: 114 ALNAFF 119 AL+ Sbjct: 119 ALSVIM 124 >gi|329850522|ref|ZP_08265367.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] gi|328840837|gb|EGF90408.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] Length = 163 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +S+I+E IS +L ++ L KAG+V++ RG GG L R A+++ + ++V A + Sbjct: 15 PISLSEISERQQISLSYLEQLFARLRKAGLVKSARGPGGGYSLSRGAERLFVSEIVLAVD 74 Query: 84 ESFFVAEC----------------FASHKIDCPLVGSCGLTSVLRKALN-AFFDVLTQYS 126 E C A+ +I C G LT L + L A D L+Q S Sbjct: 75 EPIKATRCELTSNKLGANKRLGKDEAAREIGCMPGGQRCLTHNLWEDLGVAIHDYLSQVS 134 Query: 127 IECLVRNRSSIK 138 +E +VR R+ K Sbjct: 135 LEDVVRKRTRKK 146 >gi|294140361|ref|YP_003556339.1| Rrf2 family protein [Shewanella violacea DSS12] gi|293326830|dbj|BAJ01561.1| Rrf2 family protein [Shewanella violacea DSS12] Length = 167 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 15 MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRNGLVSSVRG 74 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES C K +C C S+ Sbjct: 75 PGGGYRLGADAVDISVGMVVRAVDESVDATRC--QGKGNCQNGTRCLTHSLWGDLSKQIS 132 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L+ R Sbjct: 133 DFLNGISLAGLMSKR 147 >gi|148269496|ref|YP_001243956.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735040|gb|ABQ46380.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila RKU-1] Length = 137 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 16/140 (11%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRIS--QIAEAC--CISELFLFKILQPLVKAGIVETVRG 59 T R++Y +R+++ A +Y N +S +I E + F KIL L KAG+V+T RG Sbjct: 3 TMRSEYALRLMIVMA--KEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116 + GG L RP +I + ++V F+ + + D CP C + ++ ++ N Sbjct: 61 KSGGYMLARPPKEIKVSEIV-------FLLDRKSKVFFDMPGCPDELDCVIRALWKRVEN 113 Query: 117 AFFDVLTQYSIECLVRNRSS 136 +L+ ++E L++ + Sbjct: 114 EIEKILSGVTLEDLIKEQEE 133 >gi|73662442|ref|YP_301223.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494957|dbj|BAE18278.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 139 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ L AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAEENNLSDLYLEQLVGTLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PAD+IT D+++ E E S Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESE 96 >gi|88706198|ref|ZP_01103905.1| rrf2 family protein [Congregibacter litoralis KT71] gi|88699592|gb|EAQ96704.1| rrf2 family protein [Congregibacter litoralis KT71] Length = 160 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P R++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQDLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG RL R A+ I++ DV+ A E C K DC +C Sbjct: 61 PGGGYRLKRGAEDISVADVISAVNEDTDATRCRG--KGDCQDGDTC 104 >gi|228960772|ref|ZP_04122410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798907|gb|EEM45883.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 151 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R GI +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 9 MGISSRFTVGIHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115 +GG L R ++IT+LDV KA E + F+ H+ I+CP+ + L +L +A Sbjct: 68 KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 126 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 127 EAMENVLANVTVDQLVTNLKSKMK 150 >gi|302866226|ref|YP_003834863.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315502784|ref|YP_004081671.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|302569085|gb|ADL45287.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] gi|315409403|gb|ADU07520.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 151 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 19/109 (17%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R DY +R + A YP +S IA + FL +L L +AG+V R Sbjct: 1 MQISARGDYAVRAALSLA--TAYPTLLSTQAIAAEQDMPRKFLEAVLADLRRAGVVRAQR 58 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 G GG L RP +ITI V++A +D PL G GL Sbjct: 59 GAEGGYTLARPPREITIGHVLRA---------------VDGPLAGVRGL 92 >gi|114327990|ref|YP_745147.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] gi|114316164|gb|ABI62224.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] Length = 179 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVR 58 L+K TDY + VL+ A + + R+ IA A + E + K+L+ L +V + R Sbjct: 7 LSKLTDYAVVVLIRLAAESGEASGRVQTAPCIAAATGVPEPTVAKVLKALSVGRLVVSQR 66 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG RL R DQI+I DV++ E + C DC C + +A Sbjct: 67 GAHGGYRLNRFLDQISIADVIRVLEGPIALTACVEGAHPDCEAACLCPMRGRWDMVNHAI 126 Query: 119 FDVLTQYSIECLVRN 133 L+ S+ + R Sbjct: 127 ATALSSISLADMARQ 141 >gi|262067675|ref|ZP_06027287.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] gi|291378399|gb|EFE85917.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] Length = 140 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y +H D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I +C + L+K N Sbjct: 60 GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSATICSTRGANCSIRLALKKIQNEL 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 120 LDDFDKINFHDLVENNTGLQ 139 >gi|157961313|ref|YP_001501347.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846313|gb|ABV86812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana ATCC 700345] Length = 153 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES C + +C C S+ + Sbjct: 61 PGGGYRLGTDACDISVGMVVRAVDESVDATRCQG--QGNCQSGTRCLTHSLWGDLSSQIS 118 Query: 120 DVLTQYSIECLVRNR 134 D L S+ L+ R Sbjct: 119 DFLNGISLAGLMHKR 133 >gi|261597140|gb|ACX85433.1| putative transcriptional regulator [Arthrobacter sp. NyZ415] Length = 158 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 10/109 (9%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAE--- 90 +S +L K +Q L + G+V +++G GG L RPA+QI+ILDVV+A E + FV Sbjct: 35 VSSSYLAKQMQALSRGGLVRSLQGHAGGYVLTRPAEQISILDVVQAVEGQQPLFVCTEIR 94 Query: 91 ---CFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + DC + C + + A A+ + L + +I L S+ Sbjct: 95 QRGPLGTPPEDC--LTPCPIAKAMMTAEAAWREALREVTIGDLAHQVST 141 >gi|85059748|ref|YP_455450.1| DNA-binding transcriptional regulator IscR [Sodalis glossinidius str. 'morsitans'] gi|119371153|sp|Q2NS30|ISCR_SODGM RecName: Full=HTH-type transcriptional regulator iscR gi|84780268|dbj|BAE75045.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 165 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P +++I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSGKGPVPLAEISERQGISLSYLEQLFSRLRKHELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L R +DQI + V+ A +ES C K C C LT VL + L+ Sbjct: 61 PGGGYLLGRDSDQIAVGAVITAVDESVDATRCQG--KEGCQGGDRC-LTHVLWRDLSVRI 117 Query: 119 FDVLTQYSIECLVRN 133 + L ++ LV N Sbjct: 118 SEFLNNITLAELVSN 132 >gi|302338626|ref|YP_003803832.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta smaragdinae DSM 11293] gi|301635811|gb|ADK81238.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta smaragdinae DSM 11293] Length = 126 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T+Y + ++ A + D + +AE +S +L KIL LVK G + + G Sbjct: 1 MKYTKATNYALHTMLIMAKNADKRISVQHLAEKQDLSPTYLSKILTKLVKGGFISSFSGA 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L + + I+ LD++ E Sbjct: 61 HGGYALPQNWENISFLDIIHCME 83 >gi|29827903|ref|NP_822537.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29605004|dbj|BAC69072.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 160 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 11/134 (8%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + + P +++AE +S +L K LQ L +AG+V +V+G+ GG L Sbjct: 6 GVEWALHCCVVLTSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGKAGGYVL 65 Query: 67 CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFF 119 R IT+LDVV+A +++F E + P SC + + +A+ A+ Sbjct: 66 TREPASITVLDVVEAVDGPDQAFTCTEIRQRGPLATP-AESCAVPCAIARAMTGADAAWR 124 Query: 120 DVLTQYSIECLVRN 133 L SI LV+N Sbjct: 125 AALRAVSIADLVQN 138 >gi|213025900|ref|ZP_03340347.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 93 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ I I DVV+ E Sbjct: 15 ISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELE 71 >gi|167756512|ref|ZP_02428639.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402] gi|167702687|gb|EDS17266.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402] Length = 144 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y IRV++ A+H+D P + IA+ ++ +L +I+ L KAG ++++ Sbjct: 1 MKISTKGRYAIRVILDIAMHDDGKYIP--LKDIAKRQDLTVKYLEQIISLLNKAGYLQSL 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 RG GG RL + ++ I D+++ TE C +C C Sbjct: 59 RGNAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANEC 106 >gi|237733110|ref|ZP_04563591.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383792|gb|EEO33883.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 147 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y IRV++ A+H+D P + IA+ ++ +L +I+ L KAG ++++ Sbjct: 4 MKISTKGRYAIRVILDIAMHDDGKYIP--LKDIAKRQDLTVKYLEQIISLLNKAGYLQSL 61 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 RG GG RL + ++ I D+++ TE C +C C Sbjct: 62 RGNAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANEC 109 >gi|148261260|ref|YP_001235387.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402941|gb|ABQ31468.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum JF-5] Length = 97 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY + VL+ A IA I E + K+L+ L ++G+V + RG Sbjct: 1 MRLSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG RL RP I I DV+ A + + C Sbjct: 60 HGGYRLGRPLAAIPIADVIVAIDGPIALTACV 91 >gi|229827945|ref|ZP_04454014.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC 49176] gi|229787880|gb|EEP23994.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC 49176] Length = 144 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H + + IA+ +S+ +L +I+ L AG++ T RG Sbjct: 1 MKISTKGRYALRLMVDLAEHKESGFIALKDIAKRQNVSKKYLEQIVPVLNGAGLLTTNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116 RGG +L + + T+ D+++ TE S C + C C V + K +N Sbjct: 61 NRGGYKLSKEPSEYTVGDILRTTEGSVAPVSCLETEVNYCERKDCCQTLFVWKGLYKVVN 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 EYLDSIT 127 >gi|78358152|ref|YP_389601.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220557|gb|ABB39906.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 146 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ RT Y R+L+ A+H+ + P R S ++++ ++ F+ +IL+PL K G+V +VRG Sbjct: 1 MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L ++T+ +V+ E + EC Sbjct: 61 AAGGHLLAADPQELTLGHIVRVMEGGIHMTEC 92 >gi|50084582|ref|YP_046092.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter sp. ADP1] gi|49530558|emb|CAG68270.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter sp. ADP1] Length = 147 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +++IA IS +L ++ L + G+V +VRG GG L R A +IT+L++++A E+ Sbjct: 18 LAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARHATEITVLEIIEAVNETV 77 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 C HK +C C + ++ + D L + ++ L+ Sbjct: 78 DATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLADLI 120 >gi|322376528|ref|ZP_08051021.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. M334] gi|321282335|gb|EFX59342.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. M334] Length = 158 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 Y N IS ++E +S+ +L KI++ L G+V++VRG+ GGV L +P QIT DV A Sbjct: 25 YINTIS-LSERLEVSDSYLKKIIKLLDNEGLVKSVRGKNGGVALSKPLSQITFYDVFVAI 83 Query: 83 E 83 E Sbjct: 84 E 84 >gi|91775163|ref|YP_544919.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus flagellatus KT] gi|91709150|gb|ABE49078.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus flagellatus KT] Length = 156 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MRLTTKGRFAVTAMLDLALNEEEKPVTLAGISERQGISLSYLEQLFSRLRRNGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL + +I++ D++ A +E +C K +C C +T L +LNA Sbjct: 61 PGGGYRLTKNHHEISVSDIITAVDELIDATQCGG--KENCHEGKPC-MTHDLWSSLNAKI 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 + L+ ++ LV ++ K+I Sbjct: 118 LEYLSGVALSDLVASQREGKEI 139 >gi|85375385|ref|YP_459447.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] gi|84788468|gb|ABC64650.1| predicted transcriptional regulator [Erythrobacter litoralis HTCC2594] Length = 136 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 14/137 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY + + + A H R+S ++A + + K++ L AG++ +VR Sbjct: 1 MRLSNLADYAVVTMSHAARHCGG-GRVSAAELAAETGLPVPTVQKVVSKLTAAGLLRSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-------LTSVL 111 G GG++L RPA I + D+V+A E + C DC + +C + + + Sbjct: 60 GAGGGLQLARPAAAINVADIVEAVEGPIALTACI--DGTDCAVDHNCTVKPHWPLINNAM 117 Query: 112 RKALNAFFDVLTQYSIE 128 R AL LTQ + E Sbjct: 118 RGALAGIP--LTQLAAE 132 >gi|194333947|ref|YP_002015807.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311765|gb|ACF46160.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris aestuarii DSM 271] Length = 169 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LT+ TDY +R L+ A H D IAE I FL +LQ + + G++ + G G Sbjct: 5 LTQHTDYALRALLMLADHPDSYLSARHIAEKQEIPYQFLRGLLQEMPREGLICSHEGAHG 64 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92 GV L R I++ +V++ + ++EC Sbjct: 65 GVGLNRDPGSISVRNVIELFQGKVELSECM 94 >gi|296454824|ref|YP_003661968.1| BadM/Rrf2 family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184256|gb|ADH01138.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. longum JDM301] Length = 140 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H + P++I +AE C + + K+++PL AG++ T G GG L RP Sbjct: 9 VHALVYLDHHATHLPSQI--LAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66 Query: 70 ADQITILDVVKATEESF 86 A +IT+ V +AT +F Sbjct: 67 AAEITLRAVAEATGTTF 83 >gi|30249423|ref|NP_841493.1| hypothetical protein NE1452 [Nitrosomonas europaea ATCC 19718] gi|30138786|emb|CAD85363.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC 19718] Length = 159 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ AI H + P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTALLDIAIRHGNGPVALADISERQRISLSYLEQLFAKLRQRKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D++++ D++ A +E +C K +C C + K F Sbjct: 61 PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWAKLNEIIF 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ LV +S Sbjct: 119 DYLGHVTLKRLVEEQSQ 135 >gi|300856563|ref|YP_003781547.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436678|gb|ADK16445.1| predicted transcription regulator [Clostridium ljungdahlii DSM 13528] Length = 137 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ +DYG RV++Y + + Y +I IA+ + FL K+L+ L +AGIV++ R Sbjct: 1 MKITQESDYGFRVVLYLS-NLGYGKKIEAKTIAKDQNVPLRFLLKLLRKLTQAGIVKSFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNA 117 G GG L R + IT+ ++++A + ++ C + + + G CG+ + L K Sbjct: 60 GVNGGYALNRMPEDITLRNIIEAIDGPIYLNRCLYDTEHCNAHKKGHCGVHNALSKVQGT 119 Query: 118 FFDVLTQYSIECLVRNR 134 + L + + ++ ++ Sbjct: 120 LINELESINFKDIMEDK 136 >gi|238760769|ref|ZP_04621882.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC 35236] gi|238701015|gb|EEP93619.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC 35236] Length = 169 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 8 DYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +YGI L+ C + +D + ++A+ + +L KI L AG+V + G+ GG Sbjct: 9 EYGIHSLV-CMVDINGDDREMNVREMADLQGVPYDYLAKIFTRLSHAGLVVSSEGKGGGF 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC------FASHKIDCPLV---GSCGLTSVLRKAL 115 RL RP+ IT+LDV++A + + +C A + P G CG+ +V+ A Sbjct: 68 RLARPSALITMLDVIQAVDGQKGIFKCKEIRQRLAIFEEKLPAWVCDGPCGIRAVMDSAQ 127 Query: 116 NAFFDVLTQYSIECLVRN 133 + L +++I L R Sbjct: 128 QRMEEELARHTILDLARK 145 >gi|118469239|ref|YP_889225.1| rrf2 family protein (transcriptional regulator) [Mycobacterium smegmatis str. MC2 155] gi|118170526|gb|ABK71422.1| rrf2 family protein (putative transcriptional regulator) [Mycobacterium smegmatis str. MC2 155] Length = 156 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATVSDGELLKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 R GG L RPAD I+I DV++ + D P G + LT V R + Sbjct: 61 RDGGYALARPADAISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118 Query: 119 FDVLTQYSI 127 VL + S+ Sbjct: 119 RSVLEETSL 127 >gi|154244166|ref|YP_001415124.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158251|gb|ABS65467.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 148 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ ++ A + +++ IAEA I + FL IL L AG + + +G+ Sbjct: 2 LTKKGKYGLKAAVHLARLPPGASTQVADIAEANNIPKKFLDVILGELRNAGFLSSKKGKL 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL R ++I + ++++A + C + + DC V +C + ++ + +A Sbjct: 62 GGYRLARAPEEIVVGEMIRALDGPLAPFACASRNAYEQCEDCD-VATCEVRMLMVQVRDA 120 Query: 118 FFDVLTQYSI 127 VL Y++ Sbjct: 121 IGTVLDTYTL 130 >gi|117621543|ref|YP_856282.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562950|gb|ABK39898.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 167 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG RL + I++ V+ A +ES +C Sbjct: 61 PGGGYRLGLAPNAISVGQVITAVDESVDATKCLG 94 >gi|319782762|ref|YP_004142238.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168650|gb|ADV12188.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 149 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ + ++ IA A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLSGLPAGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I I VV+ + C + + DC +C + ++ + A Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDCD-EATCQVRHMMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL S+ + Sbjct: 121 IAEVLDNRSLAAM 133 >gi|312138539|ref|YP_004005875.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887878|emb|CBH47190.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 148 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R++M A S +AE +S K++ L + G+V T R Sbjct: 1 MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ + ++ + + E V C CPL C L S LR A +AF Sbjct: 61 GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDKP--CPLRRGCRLRSSLRVAQDAF 118 Query: 119 FDVLTQYSI 127 + L ++ Sbjct: 119 YTALDAMTV 127 >gi|15964295|ref|NP_384648.1| hypothetical protein SMc02238 [Sinorhizobium meliloti 1021] gi|307307031|ref|ZP_07586770.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|307320111|ref|ZP_07599531.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|15073472|emb|CAC45114.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306894157|gb|EFN24923.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306901971|gb|EFN32570.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 168 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + +AE +S +L K LQ + AG++E V G +GG RL R ++IT+LD+V A E Sbjct: 29 AALAEFHGVSTSYLLKHLQAMSGAGLLEAVPGPKGGYRLARAPEKITLLDIVLAVEGPEP 88 Query: 88 VAECF-----ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 C + C C + + +A A+ L + +I ++ + +I + Sbjct: 89 AFRCNEIRLRGPNPYSCKPAAPCTINVAMLRAEQAYRAELRRVTIAAIMADLKAIDR 145 >gi|292492144|ref|YP_003527583.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291580739|gb|ADE15196.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus Nc4] Length = 136 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 16/145 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ R Y I +M A+ P+ ++ IA+ IS +L +I L G+VE VR Sbjct: 1 MRLSNRPRYAISAMMNLALAKQ-PSSVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R A++ITI +++ A ++ K++ PL + S + N F Sbjct: 60 GPGGGYHLARAAEEITIAEIIAAVDKQ--------PGKLN-PLAIANNSVSEAERLWNDF 110 Query: 119 ----FDVLTQYSIECLVRNRSSIKK 139 +D L Q ++ L R +++ Sbjct: 111 SARLYDFLNQITLADLTRRWPHLRQ 135 >gi|222055613|ref|YP_002537975.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221564902|gb|ACM20874.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 134 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R++Y + L+Y A N P + IA A I FL +IL L +A + ++ Sbjct: 1 MKLTSRSEYALLALIYLARTGSENLVP--VQTIATAQGIPPKFLEQILLILKRAKFLRSL 58 Query: 58 RGRRGGVRLCRPADQITILDVVK 80 RG+ GG L RPA QI + +V++ Sbjct: 59 RGQAGGYALARPASQIHLAEVIR 81 >gi|320352697|ref|YP_004194036.1| BadM/Rrf2 family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121199|gb|ADW16745.1| transcriptional regulator, BadM/Rrf2 family [Desulfobulbus propionicus DSM 2032] Length = 159 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +Y IR ++Y + +IA I FL KI Q L K G++E +G Sbjct: 1 MRLTRAAEYAIRCMIYLSRQGQGVLTSRQEIAAQADIPPNFLAKIAQDLAKTGLIEIRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG+ L R I++L+VV+ ++ +C A C C + V A + Sbjct: 61 ARGGLVLNRHPAAISLLEVVEIMIGEIYLNDCVA-RPAACKAQRYCAVHRVWLDARDQLR 119 Query: 120 DVLTQYSIECL 130 D L + + + L Sbjct: 120 DTLRRVNFDQL 130 >gi|220904115|ref|YP_002479427.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868414|gb|ACL48749.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 138 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ +T Y R+L+Y A + + P S +A IS F+ +IL+ L AGI +VRG Sbjct: 1 MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 +GG L R +++T +V E ++ C Sbjct: 61 AKGGHVLLRKPEELTFGCIVNLMEGGIELSGCL 93 >gi|308176299|ref|YP_003915705.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743762|emb|CBT74734.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 152 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD +R +M A +I+E+ + + K + L GI++ RGR Sbjct: 1 MKLSAFTDVCLRTIMVLATPGTGQLTSREISESVGVPYNHVAKAVLELRTLGILQVTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSCGLTSVLRKALNAF 118 GG L A + ++ +++ ++ + +C + H + +CPL G+C L +V R+A AF Sbjct: 61 NGGAMLTGAALESSLGGLLRKLDKRTDIVDC-SDHDAQSNCPLAGNCRLRAVFRQAREAF 119 Query: 119 FDVLTQYSIE 128 + L I+ Sbjct: 120 YASLDALKIQ 129 >gi|169351211|ref|ZP_02868149.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM 1552] gi|169292273|gb|EDS74406.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM 1552] Length = 147 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + I +L+ A H+D P + I+++ +S+ +L KI++ LV AG++ + Sbjct: 1 MKLKNSVEQAICLLIMIA-HSDEKTPLKSYNISKSLGVSDSYLKKIIRQLVVAGLITSEA 59 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G++GGV L + D+IT+LD+ +A E Sbjct: 60 GKKGGVSLKKSPDKITLLDIFEAIE 84 >gi|146328986|ref|YP_001209737.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A] gi|146232456|gb|ABQ13434.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A] Length = 141 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A+ I+ K+L+ L+K IV++VRG GG RL + A+ IT L+VV E + Sbjct: 30 LAKKTGIAAPMASKVLKRLLKGDIVQSVRGAYGGYRLAKAAETITALEVVAVIEGMPELV 89 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 EC +K +C L +C ++ ++ A +L ++ + R+ + Sbjct: 90 ECVDQNK-NCDLSSNCPISPFWQQMNQAIETMLAAKTLADMQRDEN 134 >gi|297539149|ref|YP_003674918.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301] gi|297258496|gb|ADI30341.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301] Length = 176 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 20/157 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIA----------------EACCISELFLFKI 44 M LT + + + ++ A+H N S++A E IS +L ++ Sbjct: 1 MKLTTKGRFAVTAMLDLALHEALANSESKLAGSELNEIKPVTLAGISERQSISLSYLEQL 60 Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 L + G+V +VRG GG +L + I++ +++ A +E C +C G Sbjct: 61 FSRLRRQGLVNSVRGPGGGYKLAKNYADISVAEIINAVDEQIDATHCGGQE--NCKDEGR 118 Query: 105 CGLTSVLRKALNA-FFDVLTQYSIECLVRNRSSIKKI 140 C +T L LN D L S+ +V +++S KK+ Sbjct: 119 C-MTHDLWSTLNTKILDYLAGVSLADMVASQTSDKKV 154 >gi|312115582|ref|YP_004013178.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311220711|gb|ADP72079.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 158 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A ND P +S I+ +S +L ++ L + GIV++VRG Sbjct: 1 MLLSTKGRYAVMAIVEVARQNDARPLALSDISLRLDLSLAYLEQLFMKLRRKGIVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L R AD I+I +V+ A +E + C K C Sbjct: 61 PGGGYILARNADAISIGEVMAAVDEPVRMTRCEPEDKAGC 100 >gi|302869746|ref|YP_003838383.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315503772|ref|YP_004082659.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|302572605|gb|ADL48807.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] gi|315410391|gb|ADU08508.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 147 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 10/91 (10%) Query: 1 MHLTKRTDYGIRVLMY---CAIHNDYPN-------RISQIAEACCISELFLFKILQPLVK 50 M+++ R DY +R ++ A+ P + + +AE+ I FL IL L + Sbjct: 1 MYISARADYALRAMLAVADAAVTTGDPAAGGGELVKAASLAESQGIPLSFLQGILLDLRR 60 Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKA 81 AG++ + RG GG L RP D+I++ DV++A Sbjct: 61 AGLLHSHRGTEGGYALTRPPDEISVGDVLRA 91 >gi|15807906|ref|NP_285565.1| hypothetical protein DR_A0242 [Deinococcus radiodurans R1] gi|6460690|gb|AAF12395.1|AE001863_20 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 149 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGR 60 ++ +Y +R + A R AE +SE+ +LFK++ LV+AG+V RG+ Sbjct: 17 SQTAEYALRATVMLAEQG----RALSAAELARLSEVPPPYLFKVMGQLVRAGVVTAQRGK 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG RL R A IT+L+VV A + + C Sbjct: 73 NGGYRLGRAAGDITVLEVVNAVDPLPRIRHC 103 >gi|289550608|ref|YP_003471512.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis HKU09-01] gi|315658103|ref|ZP_07910975.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289180140|gb|ADC87385.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis HKU09-01] gi|315496432|gb|EFU84755.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 140 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IA +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAAENSLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++IT D+++ E E S Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESE 96 >gi|257792012|ref|YP_003182618.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|257475909|gb|ACV56229.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] Length = 144 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R LM C +++ +++E IS +L ++ +PLV+AG++ +VR Sbjct: 1 MLVSTKGRYALR-LMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105 G+ GG L + I DV++A E S C + CP G C Sbjct: 60 GKGGGYALAQEPAAIRAGDVLRAVEGSTAPVACLDLQEGMACPRAGEC 107 >gi|238926961|ref|ZP_04658721.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238885195|gb|EEQ48833.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 147 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 12/126 (9%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI +++ A P I I+E IS+++L ++ L ++ +V +++ Sbjct: 1 MKISAKGRYGIASMVFLARSYGTSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L RP IT +++ A E + AS K++ L +L + L Sbjct: 61 GSQGGYQLARPPHAITAYEILSAIEIALIERTGSASEKME-------KLNFILSRDL--- 110 Query: 119 FDVLTQ 124 FDVL Q Sbjct: 111 FDVLDQ 116 >gi|291301253|ref|YP_003512531.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570473|gb|ADD43438.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 149 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 15/106 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R + + ++A A I F IL L + G++E+ RG Sbjct: 1 MRLSARVDYALRAAVELTSVGEEWLSAEKVAGAQKIPGKFCESILLQLRRGGLIESRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 GG RL RPA +I++ DV++ +D PLVG G Sbjct: 61 DGGHRLARPAKEISLADVIRV---------------VDGPLVGVRG 91 >gi|74316354|ref|YP_314094.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055849|gb|AAZ96289.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans ATCC 25259] Length = 154 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ + Y ++ L+Y A D P IA + +L KILQ L K ++ + RG Sbjct: 1 MILSRTSQYAVQALIYMATQPDATPVLNKDIAAKLGVPAPYLAKILQSLAKGNLLFSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101 R GG L ++IT++ + TE F C S + CPL Sbjct: 61 RLGGFCLREGGEKITLMQIFLLTEGPAFTQSCLLGLKKCSDETACPL 107 >gi|309791704|ref|ZP_07686195.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] gi|308226254|gb|EFO79991.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] Length = 146 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DY +R L A H P + +IA I +L +L L KAG++E++RG Sbjct: 1 MRISNKGDYALRALFDLAQHIGRGPIQSDEIATRQGIPVNYLNHLLISLRKAGLIESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L R + IT+L++ + E AE Sbjct: 61 SQGGHLLARSPESITLLEIFEVVEGQLLCAE 91 >gi|81429434|ref|YP_396435.1| hypothetical protein LSA1822 [Lactobacillus sakei subsp. sakei 23K] gi|78611077|emb|CAI56130.1| Hypothetical protein LCA_1822 [Lactobacillus sakei subsp. sakei 23K] Length = 171 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/47 (51%), Positives = 34/47 (72%) Query: 37 SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 S+ +L KI++ LV AG+V++V G GG L RPA +++I DVV ATE Sbjct: 38 SQTYLRKIIRKLVVAGLVKSVSGNSGGFTLARPASEVSIYDVVLATE 84 >gi|332284622|ref|YP_004416533.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7] gi|330428575|gb|AEC19909.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7] Length = 168 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 36/62 (58%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +S +L K LQ L AGIV T+ G +GG RL R +IT+LD+V A E S Sbjct: 31 LAEFHGVSASYLLKHLQALSGAGIVHTLPGPKGGYRLARQPAKITLLDIVLAVEGSSPAF 90 Query: 90 EC 91 C Sbjct: 91 RC 92 >gi|319652366|ref|ZP_08006482.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317395828|gb|EFV76550.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 164 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y H D I +++ +SE +L KI L K GIV +V G Sbjct: 1 MQYSIGVEYALHCLVYLIDHTEDSSIGIKELSTFQGVSETYLSKIFSKLSKNGIVSSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG +L + ++I+ DV++A E + +C Sbjct: 61 VKGGYKLAKSPEEISFWDVIEAVEGPKPIFQC 92 >gi|92114964|ref|YP_574892.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798054|gb|ABE60193.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I++ IS +L ++ L +A +V++VRG Sbjct: 18 MRLTTKGRYAVTAMLDLALHADAGPISLADISKRQAISLSYLEQLFARLKRAALVKSVRG 77 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L A+ I++ V+ A +ES C DC +C L L ++ Sbjct: 78 PGGGYLLAHGANAISVASVIGAVDESVDATRCQGLS--DCQQGDTCLTHHLWCDLSDKIH 135 Query: 117 AFFDVLT 123 F D +T Sbjct: 136 GFLDAIT 142 >gi|88195436|ref|YP_500240.1| hypothetical protein SAOUHSC_01732 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202994|gb|ABD30804.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 116 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L PA++I+ D+++ E E S Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96 >gi|251788733|ref|YP_003003454.1| DNA-binding transcriptional regulator IscR [Dickeya zeae Ech1591] gi|247537354|gb|ACT05975.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591] Length = 164 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDSAEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNR 134 L +++ LV N+ Sbjct: 119 GFLNNITLDELVNNK 133 >gi|325292198|ref|YP_004278062.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium sp. H13-3] gi|325060051|gb|ADY63742.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium sp. H13-3] Length = 153 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++ Y +R L+ A + P +IS IA I + FL +IL + K IVE+ RG++ Sbjct: 9 ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 68 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA IT +V++ + C + DC C + V + +A Sbjct: 69 GGYLLARPAADITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 128 Query: 118 FFDVLTQYSI 127 ++L ++ Sbjct: 129 TRNILFNTTV 138 >gi|114327571|ref|YP_744728.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] gi|114315745|gb|ABI61805.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] Length = 149 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 I V++ H N +S IAE ++ + +LQ L +AG++E+VRG RGG RL R Sbjct: 12 ISVMLDVGFHGSRTNTVSAADIAERIGLARRGMEPLLQSLSRAGLLESVRGPRGGYRLGR 71 Query: 69 PADQITILDVV 79 P I + D+V Sbjct: 72 PKRDIRVSDIV 82 >gi|288923812|ref|ZP_06417900.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] gi|288344839|gb|EFC79280.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] Length = 151 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 49/83 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A + + +A A + FL IL L ++G+V++ RG Sbjct: 1 MQISARADYALRALLTLAASDGNLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG +LCRPA+ ITI V++AT+ Sbjct: 61 DGGYQLCRPAEDITIATVIRATD 83 >gi|284006761|emb|CBA72019.1| iron-sulfur cluster transcriptional regulator [Arsenophonus nasoniae] Length = 164 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKTGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I I V+ A +ES C + C C ++ R + Sbjct: 61 PGGGYLLGRDAKTIFIAQVISAVDESVDATRCHGRRE-GCQGGERCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNR 134 L+ S+E LV N+ Sbjct: 120 SFLSNISLEELVNNQ 134 >gi|218248538|ref|YP_002373909.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061606|ref|YP_003139494.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169016|gb|ACK67753.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 8801] gi|256591772|gb|ACV02659.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 8802] Length = 147 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ +Y P + IA + +L K+L + ++G+V++VRG Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIALRQDLPAPYLEKLLIEMRRSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 +GG +L QI++ +++A E+ E ++ D GS +T L K L+ Sbjct: 61 SQGGYQLAYQPSQISLGQILEAVGETI---EPLPGYQPDIE-QGSDWVTFSLWKRLH 113 >gi|167621776|ref|YP_001676561.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167351517|gb|ABZ74247.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 141 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 38/73 (52%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+ ++ +H D S I E+ + +L L KAG+V T RGR G L R Sbjct: 11 GVHIMQVLHVHADRKITSSFITESVNTDAGSVRLVLSKLAKAGLVTTTRGRGGSSALARA 70 Query: 70 ADQITILDVVKAT 82 AD IT+LD+ +AT Sbjct: 71 ADTITMLDIYRAT 83 >gi|118479660|ref|YP_896811.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|228948230|ref|ZP_04110514.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229032151|ref|ZP_04188127.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|229163495|ref|ZP_04291446.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] gi|229175215|ref|ZP_04302731.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3] gi|229186740|ref|ZP_04313898.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] gi|118418885|gb|ABK87304.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] gi|228596753|gb|EEK54415.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] gi|228608351|gb|EEK65657.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3] gi|228620064|gb|EEK76939.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] gi|228729157|gb|EEL80157.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|228811588|gb|EEM57925.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 151 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115 +GG L R ++IT+LDV KA E + F+ H+ I+CP+ + L +L +A Sbjct: 68 KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 126 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 127 EAMENVLANVTVDQLVTNLKSKMK 150 >gi|30264575|ref|NP_846952.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42783680|ref|NP_980927.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47530042|ref|YP_021391.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187398|ref|YP_030650.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49481494|ref|YP_038559.1| Rrf2 family protein; transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140996|ref|YP_085834.1| Rrf2 family protein; transcriptional regulator [Bacillus cereus E33L] gi|165871451|ref|ZP_02216098.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167635603|ref|ZP_02393915.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167641682|ref|ZP_02399927.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170688290|ref|ZP_02879500.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|170708378|ref|ZP_02898822.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|177653127|ref|ZP_02935414.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190566975|ref|ZP_03019891.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196034358|ref|ZP_03101767.1| rrf2 family protein [Bacillus cereus W] gi|196039250|ref|ZP_03106556.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|196044861|ref|ZP_03112095.1| rrf2 family protein [Bacillus cereus 03BB108] gi|206969656|ref|ZP_03230610.1| rrf2 family protein [Bacillus cereus AH1134] gi|206977724|ref|ZP_03238615.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217961991|ref|YP_002340561.1| rrf2 family protein [Bacillus cereus AH187] gi|218235575|ref|YP_002369303.1| rrf2 family protein [Bacillus cereus B4264] gi|218899663|ref|YP_002448074.1| rrf2 family protein [Bacillus cereus G9842] gi|218905732|ref|YP_002453566.1| rrf2 family protein [Bacillus cereus AH820] gi|222097974|ref|YP_002532031.1| rrf2 family protein; transcriptional regulator [Bacillus cereus Q1] gi|225866481|ref|YP_002751859.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227817288|ref|YP_002817297.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229601070|ref|YP_002868788.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254687004|ref|ZP_05150862.1| RRF2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254724567|ref|ZP_05186350.1| RRF2 family protein [Bacillus anthracis str. A1055] gi|254736610|ref|ZP_05194316.1| RRF2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254741648|ref|ZP_05199335.1| RRF2 family protein [Bacillus anthracis str. Kruger B] gi|254754754|ref|ZP_05206789.1| RRF2 family protein [Bacillus anthracis str. Vollum] gi|254757586|ref|ZP_05209613.1| RRF2 family protein [Bacillus anthracis str. Australia 94] gi|296504983|ref|YP_003666683.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|301056017|ref|YP_003794228.1| Rrf2 family protein; putative transcriptional regulator [Bacillus anthracis CI] gi|30259233|gb|AAP28438.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42739609|gb|AAS43535.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47505190|gb|AAT33866.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181325|gb|AAT56701.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49333050|gb|AAT63696.1| Rrf2 family protein; possible transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974465|gb|AAU16015.1| Rrf2 family protein; possible transcriptional regulator [Bacillus cereus E33L] gi|164712748|gb|EDR18278.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167510389|gb|EDR85790.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167529023|gb|EDR91778.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170126753|gb|EDS95636.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|170667796|gb|EDT18549.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172081651|gb|EDT66722.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190561966|gb|EDV15935.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|195992900|gb|EDX56859.1| rrf2 family protein [Bacillus cereus W] gi|196024349|gb|EDX63022.1| rrf2 family protein [Bacillus cereus 03BB108] gi|196029877|gb|EDX68478.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206735344|gb|EDZ52512.1| rrf2 family protein [Bacillus cereus AH1134] gi|206744025|gb|EDZ55441.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217066878|gb|ACJ81128.1| rrf2 family protein [Bacillus cereus AH187] gi|218163532|gb|ACK63524.1| rrf2 family protein [Bacillus cereus B4264] gi|218536473|gb|ACK88871.1| rrf2 family protein [Bacillus cereus AH820] gi|218544856|gb|ACK97250.1| rrf2 family protein [Bacillus cereus G9842] gi|221242032|gb|ACM14742.1| Rrf2 family protein; possible transcriptional regulator [Bacillus cereus Q1] gi|225785815|gb|ACO26032.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227005099|gb|ACP14842.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229265478|gb|ACQ47115.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|296326035|gb|ADH08963.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|300378186|gb|ADK07090.1| Rrf2 family protein; possible transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324328400|gb|ADY23660.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942291|gb|AEA18187.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 143 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115 +GG L R ++IT+LDV KA E + F+ H+ I+CP+ + L +L +A Sbjct: 60 KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 118 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 119 EAMENVLANVTVDQLVTNLKSKMK 142 >gi|255525184|ref|ZP_05392127.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296187437|ref|ZP_06855832.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] gi|255511143|gb|EET87440.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296047959|gb|EFG87398.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] Length = 144 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 9/140 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ LM A++ N + I+E ISE +L +I L K+G+V +G Sbjct: 1 MKISTKGRYGLKALMDIAMYSNSEAVTLKSISERQNISEGYLEQIFSALRKSGLVIGKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG L + ITI ++++ E + + + + D + C L + K +N Sbjct: 61 AQGGYTLSKHISTITIGEILRTLEGNLSLVDI--RDRDDADELERCINENLWDAINKNIN 118 Query: 117 AFFDVLTQYSIECLVRNRSS 136 +FD +T +E LV S Sbjct: 119 DYFDSIT---LEDLVNKYKS 135 >gi|154253702|ref|YP_001414526.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154157652|gb|ABS64869.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 164 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + Y + + A H+ P +++IA+ IS +L ++ L + +V++VRG Sbjct: 8 LTTKGRYAVMAMADLARHSSGSPVALAEIADRQEISLSYLEQLFAKLRRGDLVKSVRGPG 67 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R AD I I DV+ A +E C S K P G C +T L + L+ Sbjct: 68 GGYLLSREADSIRISDVILAVDEPIKATRCDLGSPKGCMPSSGRC-ITHDLWEGLSHQIQ 126 Query: 121 V-LTQYSIECLVRNRSSIKKIFNA 143 + L S+ ++ R + K F+A Sbjct: 127 LYLGSVSLGDVIDGRIAGKSAFDA 150 >gi|56752461|ref|YP_173162.1| hypothetical protein syc2452_d [Synechococcus elongatus PCC 6301] gi|81300274|ref|YP_400482.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687420|dbj|BAD80642.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169155|gb|ABB57495.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus elongatus PCC 7942] Length = 151 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 23/154 (14%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + L+ + +Y + L+ A N P +I Q+A+ I + +L ++L L + GIV +VR Sbjct: 6 VELSGKCEYALLALIELARGHSNGEPQQIKQLADRQNIPDRYLEQLLATLRRGGIVRSVR 65 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL--- 115 G RGG L R QI++ DVV + + E + ID V ++ R+ L Sbjct: 66 GARGGYLLAREPWQISMQDVVHCIDGT----EMQRTEAIDQQSV------TIERQILVDI 115 Query: 116 -----NAFFDVLTQYSIECLV---RNRSSIKKIF 141 A DVL YS++ L+ NR+S ++ Sbjct: 116 NVELCKAVEDVLAAYSLQDLLEIRENRASTDLMY 149 >gi|326797990|ref|YP_004315809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sphingobacterium sp. 21] gi|326548754|gb|ADZ77139.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp. 21] Length = 145 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K++ Y I+ L+ + P +I +IAE I + FL +IL + AGI+ + +G Sbjct: 2 LSKKSKYAIKALIVLGKNYGKEPMQILKIAEEENIPKKFLEQILLEMRNAGILYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + I + V++ T+ + C F +C +CG+ NA Sbjct: 62 GGYSLNKDPEDIRLSQVIRLTDGPIALLPCVSLNFYRRCDECKTEETCGIRDTFVDVRNA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L SI +++ ++ Sbjct: 122 MLQILNDTSIADIIKREENL 141 >gi|254445085|ref|ZP_05058561.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] gi|198259393|gb|EDY83701.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] Length = 137 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + DY R L A +RI ++A+ I +L +IL L G++E+ R Sbjct: 1 MKLSVKLDYACRALARMASRRPSGELSRIEELADVEAIPANYLVQILGELRNGGLIESRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G++GG L R ++IT+ +V+ + + F S + P+ GS S + K Sbjct: 61 GKQGGYLLARAPEEITLREVI-----ALVQGDVFGS--VANPVGGSG---STVAKTWKVL 110 Query: 119 FDVLTQYSIECLVRN 133 D Q + E VR+ Sbjct: 111 QDCFEQKASELTVRD 125 >gi|186683177|ref|YP_001866373.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465629|gb|ACC81430.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 146 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA+ I +L K+L + +A IV+++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPVSVRAIAKRQDIPAPYLEKLLIEMRRASIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG +L R QI+I +++A E+ + H P +T L + LN Sbjct: 61 SIGGYQLAREPAQISIGQILEAVGETSHLP-----HHTPAPTQAEDWVTFSLWQRLN 112 >gi|325983001|ref|YP_004295403.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp. AL212] gi|325532520|gb|ADZ27241.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp. AL212] Length = 162 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ A+ + +P ++ I++ IS +L ++ L ++ +V++VRG Sbjct: 1 MRLTTKGRFAVTALLDLALQQSSHPITLADISQRQKISLSYLEQLFAKLRQSELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D+++I D++ A +E +C K +C G C + K F Sbjct: 61 PGGGYCLSKDLDKVSIADIILAVDEPIDATQCGG--KENCHNDGKCMTHDLWAKLNELIF 118 Query: 120 DVLTQYSIECLVRNR 134 + L +++ LV N+ Sbjct: 119 EYLGAVTLKELVDNQ 133 >gi|238765525|ref|ZP_04626441.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC 33638] gi|238796770|ref|ZP_04640276.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC 43969] gi|238696264|gb|EEP89065.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC 33638] gi|238719501|gb|EEQ11311.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC 43969] Length = 164 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H +D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I + V+ A +ES C Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 92 >gi|323490017|ref|ZP_08095238.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396313|gb|EGA89138.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 138 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIDLAKHYGEGPLPLRKIAAQNDLSEAYLEQLVGPLRNSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L R +I+ DV++ E E K Sbjct: 61 AYGGYMLTRHPKEISAGDVIRVLEGPIQPVEGIEDEK 97 >gi|210610735|ref|ZP_03288595.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787] gi|210152299|gb|EEA83306.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787] Length = 483 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR++ Y A + S+++ +S ++ KI + L A IV G Sbjct: 1 MQLKNSTDYAIRIVCYLAAQERMVS-TSELSRKLNVSANYVPKIAKKLKNAKIVTACEGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118 GG L + + I++++++ EE+ + C + C L +C + +L N + Sbjct: 60 NGGYMLAKQPENISLMEIISCVEETMAINRCLEEDRF-CSRNLEDTCKIHKILLSLQNTY 118 Query: 119 FDVLTQYSIECLVR 132 + L + ++R Sbjct: 119 NNKLESVKVSDVIR 132 >gi|30022586|ref|NP_834217.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|29898144|gb|AAP11418.1| RRF2 family protein [Bacillus cereus ATCC 14579] Length = 145 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 3 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115 +GG L R ++IT+LDV KA E + F+ H+ I+CP+ + L +L +A Sbjct: 62 KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 121 EAMENVLANVTVDQLVTNLKSKMK 144 >gi|23015553|ref|ZP_00055325.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 151 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 5/144 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ ++Y A H P I+ IA++ I + FL IL + ++ + +G+ Sbjct: 4 LSSKAKYGLKAMVYLARHEGLGPVLIADIAQSERIPKKFLDAILLEMKNQKLLSSKKGKG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L PA +I + D+V+ + C + DC +C + +V++ +A Sbjct: 64 GGYTLAMPAARIMVGDIVRVLDGPLAPVSCVSRSAYRACDDCTDEAACTIRAVMQDVRDA 123 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 +L ++ + R + + Sbjct: 124 IAAILDNTTLADMANRRGRPEPVL 147 >gi|282896000|ref|ZP_06304031.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] gi|281199110|gb|EFA73980.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] Length = 147 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA I +L K+L + AG+V ++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPGSVKAIASRQEIPAAYLEKLLIEMRHAGLVHSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 GG +L + QI+I ++++A E+ Sbjct: 61 SVGGYKLAKHPQQISIGEILEAVGENI 87 >gi|57242644|ref|ZP_00370581.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter upsaliensis RM3195] gi|57016573|gb|EAL53357.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter upsaliensis RM3195] Length = 133 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y + P + +A I + FL KILQ L + G++ + +G Sbjct: 1 MLLTKASEYALLSLIYIS-SKSTPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVG-SCGLTSV---LRKAL 115 RGG L R T+ +++ + E + V EC CP +C L SV L++ + Sbjct: 60 RGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116 Query: 116 NAFFDVLTQYSIECLVRNR 134 + F D +T +E ++ N Sbjct: 117 DNFLDSIT---LEDIINNN 132 >gi|65321873|ref|ZP_00394832.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] gi|228903025|ref|ZP_04067164.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 4222] gi|228910330|ref|ZP_04074146.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 200] gi|228917145|ref|ZP_04080703.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923250|ref|ZP_04086540.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929554|ref|ZP_04092573.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935816|ref|ZP_04098628.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941684|ref|ZP_04104231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954776|ref|ZP_04116797.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228967601|ref|ZP_04128624.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228974611|ref|ZP_04135177.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981206|ref|ZP_04141506.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407] gi|228987757|ref|ZP_04147868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048212|ref|ZP_04193781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676] gi|229072011|ref|ZP_04205221.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] gi|229081759|ref|ZP_04214252.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2] gi|229093603|ref|ZP_04224704.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|229111969|ref|ZP_04241513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15] gi|229124071|ref|ZP_04253263.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201] gi|229129791|ref|ZP_04258758.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4] gi|229141238|ref|ZP_04269777.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26] gi|229147065|ref|ZP_04275425.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24] gi|229152700|ref|ZP_04280887.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550] gi|229158115|ref|ZP_04286184.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] gi|229180772|ref|ZP_04308110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W] gi|229192705|ref|ZP_04319664.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876] gi|229198656|ref|ZP_04325357.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293] gi|228584815|gb|EEK42932.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293] gi|228590795|gb|EEK48655.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876] gi|228602750|gb|EEK60233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W] gi|228625344|gb|EEK82102.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] gi|228630763|gb|EEK87405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550] gi|228636453|gb|EEK92923.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24] gi|228642279|gb|EEK98571.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26] gi|228653707|gb|EEL09578.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4] gi|228659373|gb|EEL15021.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201] gi|228671533|gb|EEL26833.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15] gi|228689812|gb|EEL43618.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|228701604|gb|EEL54097.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2] gi|228711170|gb|EEL63135.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] gi|228723199|gb|EEL74575.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676] gi|228772031|gb|EEM20486.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778406|gb|EEM26673.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407] gi|228785014|gb|EEM33027.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792092|gb|EEM39671.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228804896|gb|EEM51494.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817896|gb|EEM63974.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823873|gb|EEM69693.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830133|gb|EEM75751.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836456|gb|EEM81807.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842563|gb|EEM87653.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849282|gb|EEM94120.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 200] gi|228856618|gb|EEN01139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 4222] Length = 151 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115 +GG L R ++IT+LDV KA E + F+ H+ I+CP+ + L +L +A Sbjct: 68 KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 126 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 127 EAMENVLANVTVDQLVTNLKSKMK 150 >gi|51597176|ref|YP_071367.1| DNA-binding transcriptional regulator IscR [Yersinia pseudotuberculosis IP 32953] gi|108808332|ref|YP_652248.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Antiqua] gi|108811403|ref|YP_647170.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Nepal516] gi|145599514|ref|YP_001163590.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Pestoides F] gi|149365356|ref|ZP_01887391.1| Fe-S cluster-containing transcription factor [Yersinia pestis CA88-4125] gi|153947579|ref|YP_001400148.1| IscR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162418343|ref|YP_001605041.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Angola] gi|165928257|ref|ZP_02224089.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. F1991016] gi|166008265|ref|ZP_02229163.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166212578|ref|ZP_02238613.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398867|ref|ZP_02304391.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421227|ref|ZP_02312980.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423261|ref|ZP_02315014.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929956|ref|YP_002347831.1| DNA-binding transcriptional regulator IscR [Yersinia pestis CO92] gi|229838481|ref|ZP_04458640.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895486|ref|ZP_04510657.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A] gi|229899050|ref|ZP_04514194.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. India 195] gi|229901657|ref|ZP_04516779.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516] gi|270489849|ref|ZP_06206923.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis KIM D27] gi|294504543|ref|YP_003568605.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003] gi|81638849|sp|Q667Y0|ISCR_YERPS RecName: Full=HTH-type transcriptional regulator iscR gi|119371156|sp|Q1C5G9|ISCR_YERPA RecName: Full=HTH-type transcriptional regulator iscR gi|119371157|sp|Q0WD07|ISCR_YERPE RecName: Full=HTH-type transcriptional regulator iscR gi|119371158|sp|Q1CKB0|ISCR_YERPN RecName: Full=HTH-type transcriptional regulator iscR gi|189044755|sp|A7FFX0|ISCR_YERP3 RecName: Full=HTH-type transcriptional regulator iscR gi|189044756|sp|A4TMV5|ISCR_YERPP RecName: Full=HTH-type transcriptional regulator iscR gi|226711630|sp|A9R819|ISCR_YERPG RecName: Full=HTH-type transcriptional regulator iscR gi|51590458|emb|CAH22098.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775051|gb|ABG17570.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Nepal516] gi|108780245|gb|ABG14303.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Antiqua] gi|115348567|emb|CAL21508.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211210|gb|ABP40617.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Pestoides F] gi|149291769|gb|EDM41843.1| Fe-S cluster-containing transcription factor [Yersinia pestis CA88-4125] gi|152959074|gb|ABS46535.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pseudotuberculosis IP 31758] gi|162351158|gb|ABX85106.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis Angola] gi|165919764|gb|EDR37097.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. F1991016] gi|165992647|gb|EDR44948.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166206509|gb|EDR50989.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. B42003004] gi|166960716|gb|EDR56737.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051371|gb|EDR62779.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057431|gb|EDR67177.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681586|gb|EEO77680.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516] gi|229687995|gb|EEO80067.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. India 195] gi|229694847|gb|EEO84894.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701292|gb|EEO89320.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A] gi|262362464|gb|ACY59185.1| hypothetical protein YPD4_2278 [Yersinia pestis D106004] gi|270338353|gb|EFA49130.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis KIM D27] gi|294355002|gb|ADE65343.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003] gi|320016040|gb|ADV99611.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 164 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I + V+ A +ES C Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 92 >gi|257455232|ref|ZP_05620467.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter aerosaccus SK60] gi|257447194|gb|EEV22202.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter aerosaccus SK60] Length = 204 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 8/144 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ ++ +S IA+ IS +L ++ L K G+V + Sbjct: 1 MRLTTRGRYAVTALLDLALQEQKHELAVSLSDIAKRQEISISYLEQLFSKLRKKGLVVST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG + +P ++I+I+ ++ A +ES C K +C C LT L L+ Sbjct: 61 RGASGGYHIAKPINEISIMSIISAVDESVDARACEG--KGNCQDGAMC-LTHDLWNGLSE 117 Query: 118 FFD-VLTQYSIECLVRNRSSIKKI 140 + L+ +++ L+ NR I++I Sbjct: 118 QIENYLSTVTLDTLI-NRQIIREI 140 >gi|123441401|ref|YP_001005388.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238788188|ref|ZP_04631983.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii ATCC 33641] gi|332162656|ref|YP_004299233.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|189044754|sp|A1JKQ1|ISCR_YERE8 RecName: Full=HTH-type transcriptional regulator iscR gi|122088362|emb|CAL11153.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238723775|gb|EEQ15420.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii ATCC 33641] gi|318606762|emb|CBY28260.1| iron-sulfur cluster regulator IscR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666886|gb|ADZ43530.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859250|emb|CBX69600.1| HTH-type transcriptional regulator iscR [Yersinia enterocolitica W22703] Length = 164 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I + V+ A +ES C Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 92 >gi|238753892|ref|ZP_04615252.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC 29473] gi|238707880|gb|EEQ00238.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC 29473] Length = 164 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQNGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A QI + V+ A +ES C Sbjct: 61 PGGGYLLGKDAAQIAVGAVITAVDESVDATRC 92 >gi|27468226|ref|NP_764863.1| hypothetical protein SE1308 [Staphylococcus epidermidis ATCC 12228] gi|57867116|ref|YP_188765.1| Rrf2 family protein [Staphylococcus epidermidis RP62A] gi|251811031|ref|ZP_04825504.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875949|ref|ZP_06284816.1| Rrf2 family protein [Staphylococcus epidermidis SK135] gi|293366417|ref|ZP_06613095.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315772|gb|AAO04907.1|AE016748_141 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637774|gb|AAW54562.1| Rrf2 family protein [Staphylococcus epidermidis RP62A] gi|251805449|gb|EES58106.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294974|gb|EFA87501.1| Rrf2 family protein [Staphylococcus epidermidis SK135] gi|291319451|gb|EFE59819.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329724645|gb|EGG61151.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU144] gi|329735208|gb|EGG71500.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU045] Length = 140 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L P+++IT D+++ E E S Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSE 96 >gi|304436329|ref|ZP_07396306.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370684|gb|EFM24332.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 175 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI +++ A D P I I+E IS+++L ++ L ++ +V +++ Sbjct: 29 MKISAKGRYGIASMVFLARSYDTSSPVTIISISEHLGISKIYLEQVFALLKRSKLVNSIK 88 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G +GG +L RP IT D++ A E Sbjct: 89 GSQGGYQLARPPHDITAYDILSAIE 113 >gi|315638496|ref|ZP_07893673.1| rrf2 family protein [Campylobacter upsaliensis JV21] gi|315481487|gb|EFU72114.1| rrf2 family protein [Campylobacter upsaliensis JV21] Length = 133 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y + P + +A I + FL KILQ L + G++ + +G Sbjct: 1 MLLTKASEYALLSLIYIS-SKSTPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVG-SCGLTSV---LRKAL 115 +GG L R T+ +++ + E + V EC CP +C L SV L++ + Sbjct: 60 KGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116 Query: 116 NAFFDVLTQYSIECLVRNR 134 + F D +T +E +++N Sbjct: 117 DNFLDSIT---LEDIIKNN 132 >gi|242242899|ref|ZP_04797344.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242233674|gb|EES35986.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319400953|gb|EFV89172.1| rrf2 family protein [Staphylococcus epidermidis FRI909] Length = 140 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L P+++IT D+++ E E S Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSE 96 >gi|206602829|gb|EDZ39310.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 141 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R +Y +R L+ A+ D +QIA I + FL +IL LVK GIVE+ RG R Sbjct: 4 RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63 Query: 62 GGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 G L + + I++ ++ E FF I L S +R L Sbjct: 64 GKYCLGQRPEDISLYRLLAMVEGEIVFFDPATPPGPAIQT-------LYSDIRDGLVGVL 116 Query: 120 DVLTQYS-IECLVRNRSSIKKIF 141 D T + +E ++RS + +F Sbjct: 117 DRFTLDAFVEAAGKDRSETRPMF 139 >gi|149185219|ref|ZP_01863536.1| predicted transcriptional regulator [Erythrobacter sp. SD-21] gi|148831330|gb|EDL49764.1| predicted transcriptional regulator [Erythrobacter sp. SD-21] Length = 136 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + + A H S++A + + K++ L AG++ +VRG Sbjct: 1 MRLSNLADYAVVTMSQAARHCGGGRVSASELAAETGLPAPTVQKLVSKLTAAGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG++L RPA IT+ D+V+A E + C Sbjct: 61 AGGGLQLARPAAAITLADIVEAVEGPIALTACI 93 >gi|331270571|ref|YP_004397063.1| rrf2 family protein [Clostridium botulinum BKT015925] gi|329127121|gb|AEB77066.1| rrf2 family protein (putative transcriptional regulator) [Clostridium botulinum BKT015925] Length = 139 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R+++Y C + IAE I FL KIL+ L ++GIVE+ RG Sbjct: 1 MKITQEVDYALRIVLYLCKLGFGEKIEAKFIAEHENIPIRFLLKILRKLKQSGIVESFRG 60 Query: 60 RRGGVRLCR-PADQITILDVVKATEESFFVAECFASHK 96 GG L + PAD I+ D++ + + ++ C K Sbjct: 61 INGGYALNKYPAD-ISFKDIIISIDGPIYMNRCLYDPK 97 >gi|269140159|ref|YP_003296860.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda EIB202] gi|267985820|gb|ACY85649.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda EIB202] gi|304559993|gb|ADM42657.1| Iron-sulfur cluster regulator IscR [Edwardsiella tarda FL6-60] Length = 165 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I I V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKEASEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHALWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNR 134 L S+ LV N+ Sbjct: 119 GFLNNISLAELVNNQ 133 >gi|238758817|ref|ZP_04619990.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC 35236] gi|238702925|gb|EEP95469.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC 35236] Length = 185 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I + V+ A +ES C Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 113 >gi|226363891|ref|YP_002781673.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226242380|dbj|BAH52728.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 154 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 13/136 (9%) Query: 3 LTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++ + G+ ++C + + P +++A+ +S+ +L K LQ L +AG+V G Sbjct: 1 MSMKISGGVEWSLHCCVVLSQAEGPVPTARLADLHGVSKSYLAKHLQSLARAGLVHPTEG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 R GG L R IT+LDVV+A + + C A+ C CG+ V+ Sbjct: 61 RDGGYVLTRAPADITVLDVVQAVDGAGPAFRCTEIRQQGLLAAPPEQCKT--PCGIAKVM 118 Query: 112 RKALNAFFDVLTQYSI 127 +A A+ L+ +I Sbjct: 119 AEAERAWRASLSGVTI 134 >gi|310643521|ref|YP_003948279.1| hth-type transcriptional regulator cymr [Paenibacillus polymyxa SC2] gi|309248471|gb|ADO58038.1| HTH-type transcriptional regulator cymR [Paenibacillus polymyxa SC2] Length = 139 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L +T D+++ E Sbjct: 61 AYGGYILANEPSGVTAGDIIRVLE 84 >gi|291037439|ref|ZP_06568403.1| transcriptional regulator BadM/Rrf2 [Gluconacetobacter xylinus NBRC 3288] Length = 136 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ RTDY RVL++ A + D + I E IS L K++Q L AGIV+ RG Sbjct: 1 MRLSLRTDYAFRVLIHLACNPDSRVTVRNITELHGISHNHLVKVVQHLCHAGIVQGTRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL A I + +++ E E C +S C L +C ++ +A++AF Sbjct: 61 TGGIRLAVSARNINVGHIMRLMETEKESPGACHSSGNNQCILGNACQFRHLIVQAVDAFM 120 >gi|113460426|ref|YP_718488.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus 129PT] gi|112822469|gb|ABI24558.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus 129PT] Length = 135 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG +L +QI+I V+ A E+ V +C + DC Sbjct: 61 PGGGYQLGLSTEQISIGMVINAVNENINVTKCLGNG--DC 98 >gi|22125232|ref|NP_668655.1| DNA-binding transcriptional regulator IscR [Yersinia pestis KIM 10] gi|45442337|ref|NP_993876.1| DNA-binding transcriptional regulator IscR [Yersinia pestis biovar Microtus str. 91001] gi|170023521|ref|YP_001720026.1| DNA-binding transcriptional regulator IscR [Yersinia pseudotuberculosis YPIII] gi|186896270|ref|YP_001873382.1| DNA-binding transcriptional regulator IscR [Yersinia pseudotuberculosis PB1/+] gi|21958101|gb|AAM84906.1|AE013736_2 hypothetical protein y1333 [Yersinia pestis KIM 10] gi|45437201|gb|AAS62753.1| Predicted transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|169750055|gb|ACA67573.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis YPIII] gi|186699296|gb|ACC89925.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis PB1/+] Length = 185 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I + V+ A +ES C Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 113 >gi|315633897|ref|ZP_07889186.1| iron-sulfur cluster assembly transcription regulator IscR [Aggregatibacter segnis ATCC 33393] gi|315477147|gb|EFU67890.1| iron-sulfur cluster assembly transcription regulator IscR [Aggregatibacter segnis ATCC 33393] Length = 160 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH D P +S I+E IS +L ++ L + +V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIAIHADNGPVSLSDISERQHISLSYLEQLFAKLRRNNLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + I+I ++ A E+ +C K +C C ++ K Sbjct: 61 PGGGYKLGHMPEDISIGMIIAAVNENIDTTKCLG--KGNCQNGQECLTHTLWDKLSQRIA 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L + ++ LV K Sbjct: 119 DFLNEITLAELVSQHKQKK 137 >gi|238795105|ref|ZP_04638696.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC 29909] gi|238725553|gb|EEQ17116.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC 29909] Length = 185 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I + V+ A +ES C Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 113 >gi|218887633|ref|YP_002436954.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758587|gb|ACL09486.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 264 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + YG R+++ A H+ P + +A +S+ +L KI + L +AG++ + RG Sbjct: 1 MRLLTNSRYGTRMMLDIAQHSRLGPVLMRDVARRLDVSQKYLEKISRSLKEAGLLTSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R D I++ DVV+ E + C + +C C V ++ A F Sbjct: 61 PSGGHRLGRAPDDISVGDVVRVLEGGAEMVGCGRDEE-NCTHAPGCLTRMVWKECSRAMF 119 Query: 120 DVLTQYSIECLVR 132 L + L+R Sbjct: 120 ARLDAITFGELLR 132 >gi|116669235|ref|YP_830168.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24] gi|116609344|gb|ABK02068.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24] Length = 149 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R +M A D +Q IA+A + K + L + G+++ RG Sbjct: 1 MKINAFADVSLRAMMVLAAAPDGNLLTTQSIADAVGTPYNHVSKAMARLRELGVIDVERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL + T+ +++ A+C S DCPL+ C L L +A AF+ Sbjct: 61 RNGGSRLNEAGRRATVGQLLRQLNTRTDPADCH-SLNGDCPLINECRLRGALARAREAFY 119 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L + L R + +F A Sbjct: 120 RELDDIVVSTLPGTR-QMAPVFQA 142 >gi|228475199|ref|ZP_04059925.1| Rrf2 family protein [Staphylococcus hominis SK119] gi|314936260|ref|ZP_07843607.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80] gi|228270810|gb|EEK12212.1| Rrf2 family protein [Staphylococcus hominis SK119] gi|313654879|gb|EFS18624.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80] Length = 140 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ ++RG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENHLSDLYLEQLVGPLRNAGLIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG +L P+++I+ D+++ E + E S Sbjct: 61 AKGGYQLRVPSEEISAGDIIRLLEGPITIVESIDSE 96 >gi|169333997|ref|ZP_02861190.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM 17244] gi|169258714|gb|EDS72680.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A + D + ++++ IS +L +I L K G + +VRG Sbjct: 1 MKISTKGRYALRLMIDLAKNYDGKYITLKEVSKRQDISIKYLEQITTQLCKVGYLNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + + T D+++ TE S C + + C GSC + N Sbjct: 61 PKGGYKLAKEPREYTAGDILRVTEGSLAPIACLEAEENACTRSGSCATLPFWKGLYNVIE 120 Query: 120 DVLTQYSIECLVRNRSS 136 + + ++E L+ + Sbjct: 121 NYVNNVTLEDLLDDEKD 137 >gi|159026192|emb|CAO88841.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 147 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V + RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 +GG +L RPA++I++ +++A E+ Sbjct: 61 SQGGYQLARPANRISLGQILEAVGET 86 >gi|260771408|ref|ZP_05880333.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972] gi|260613534|gb|EEX38728.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972] gi|315180989|gb|ADT87903.1| HTH-type transcriptional regulator iscR [Vibrio furnissii NCTC 11218] Length = 163 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL Sbjct: 1 MTAMLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGSD 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSI- 127 A+ I+I V+ A +ES +C + K DC C LT L + L++ D L ++ Sbjct: 61 ANTISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSSRISDFLNNITLG 117 Query: 128 ECLVRNR 134 E ++ N Sbjct: 118 ELMIDNE 124 >gi|13471643|ref|NP_103209.1| hypothetical protein mlr1674 [Mesorhizobium loti MAFF303099] gi|14022386|dbj|BAB48995.1| mlr1674 [Mesorhizobium loti MAFF303099] Length = 149 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ ++ ++ IA A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLSSLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I I VV+ + C + + DC +C + ++ + A Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDCD-EATCQVRHMMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL S+ + Sbjct: 121 IAEVLDNRSLAAM 133 >gi|116748731|ref|YP_845418.1| BadM/Rrf2 family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697795|gb|ABK16983.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobacter fumaroxidans MPOB] Length = 133 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R++Y + L+Y A H + IA A I FL +IL L A + + +G Sbjct: 1 MRLTCRSEYALLALVYLARHQGETFIPVPAIAAAQGIPPKFLEQILLSLRLAKYLHSSKG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 + GG RL +PAD IT+ ++++ Sbjct: 61 KNGGFRLAKPADTITLAEIIR 81 >gi|223935695|ref|ZP_03627611.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] gi|223895703|gb|EEF62148.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] Length = 139 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ ++DY R ++ A H R+ +AE I +L +IL L IV+++R Sbjct: 1 MKLSAKSDYAARAVIGLARHYQTGESLRVEDLAEGQGIPPNYLVQILIELKSQQIVKSLR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87 G+ GG L RP +I++ DV++ F Sbjct: 61 GKEGGYLLARPPAEISMADVLRCVHGQVF 89 >gi|186683299|ref|YP_001866495.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465751|gb|ACC81552.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 145 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 19/149 (12%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + +Y + ++ + N P +I QIAE I +L ++L L G++ ++R Sbjct: 1 MRLPNKFEYSLLAMLALVDSYQNGDPMQIKQIAELKGIQNRYLEQLLATLRCQGLINSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-------LVGSCGLTSVL 111 G +GG L R +IT+LDV+ A E +ID P + S + V Sbjct: 61 GAKGGYILARDPRKITVLDVLTAIE----------GVEIDAPANNTTIDTMESSIVEEVW 110 Query: 112 RKALNAFFDVLTQYSIECLVRNRSSIKKI 140 ++A A V ++S++ L RS +++ Sbjct: 111 QEACQAANFVFQKHSLQDLWERRSKRQQM 139 >gi|254361062|ref|ZP_04977207.1| possible transcriptional regulator [Mannheimia haemolytica PHL213] gi|261493610|ref|ZP_05990130.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495448|ref|ZP_05991896.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092548|gb|EDN73603.1| possible transcriptional regulator [Mannheimia haemolytica PHL213] gi|261308953|gb|EEY10208.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310792|gb|EEY11975.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 150 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L + GIV++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQLFAQLRRDGIVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GG +L + ++I++ ++ A E+ V +C S Sbjct: 61 PGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGS 95 >gi|110834734|ref|YP_693593.1| rrf2 family protein [Alcanivorax borkumensis SK2] gi|110647845|emb|CAL17321.1| rrf2 family protein [Alcanivorax borkumensis SK2] Length = 154 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 12/115 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVG 103 GG +L R + QI + V+ A +ES C +H + C L G Sbjct: 61 PGGGYQLSRNSGQIDVAAVIAAVDESVDATRCGGHGDCQEGDICLTHHLWCDLSG 115 >gi|52081231|ref|YP_080022.1| negative regulator of riboflavin kinase [Bacillus licheniformis ATCC 14580] gi|52786611|ref|YP_092440.1| YrzC [Bacillus licheniformis ATCC 14580] gi|319644802|ref|ZP_07999035.1| YrzC protein [Bacillus sp. BT1B_CT2] gi|52004442|gb|AAU24384.1| negative regulator of riboflavin kinase [Bacillus licheniformis ATCC 14580] gi|52349113|gb|AAU41747.1| YrzC [Bacillus licheniformis ATCC 14580] gi|317392611|gb|EFV73405.1| YrzC protein [Bacillus sp. BT1B_CT2] Length = 138 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L IT D+++ E E + + Sbjct: 61 AYGGYILGEEPAAITAGDIIRVLEGPISPVEVLENEE 97 >gi|254423218|ref|ZP_05036936.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335] gi|196190707|gb|EDX85671.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335] Length = 134 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P RI QIA I + +L ++L L + G V++ RG +GG L R Q+++LDVV E Sbjct: 16 PLRICQIAAQQGIPDRYLEQLLATLRRGGFVKSQRGAKGGYLLTREPWQVSLLDVVSCIE 75 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 F A + ++ P + S V ++ + VL +Y+++ LV R++ +++ Sbjct: 76 --GFDAN---AREVKSPQTTEGAVVSEVWQEVWRSAESVLEEYTLQDLVDKRNTRQQV 128 >gi|254410673|ref|ZP_05024452.1| rrf2 family protein (putative transcriptional regulator) [Microcoleus chthonoplastes PCC 7420] gi|196182879|gb|EDX77864.1| rrf2 family protein (putative transcriptional regulator) [Microcoleus chthonoplastes PCC 7420] Length = 147 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA+ + +L K+L + +A +V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPGYGPTSVKMIAQRQDLPAPYLEKLLIEMRRANLVNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 +GG +L R +I++ ++ A E+ E H+ D Sbjct: 61 SQGGYQLAREPSKISLGQILAAVGETI---EPLHHHQADA 97 >gi|17229573|ref|NP_486121.1| hypothetical protein alr2081 [Nostoc sp. PCC 7120] gi|17131172|dbj|BAB73780.1| alr2081 [Nostoc sp. PCC 7120] Length = 147 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y ++ L+ ++ Y P + IA+ I +L K+L + +AG+V+++RG Sbjct: 1 MKLTTKGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG +L R +I+I +++A +E+ Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDET 86 >gi|154174055|ref|YP_001408761.1| RRF2 family protein [Campylobacter curvus 525.92] gi|112802637|gb|EAT99981.1| RRF2 family protein [Campylobacter curvus 525.92] Length = 138 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L+ D IA + + + + K+ Q L KAG++E VR Sbjct: 1 MQVGTKFSVSIHILLSAEFFKDEKVTSEFIASSVGTNPVIIRKLTQLLKKAGLLE-VRAG 59 Query: 61 RGGVRLCRPADQITILDVVKA-TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GGV L + +QIT+LDV +A ++E + + A CPL G G L S A NA Sbjct: 60 VGGVNLAKKPEQITLLDVYQAVSDEEKNLFKIHAKSPAACPLGGKIGNLLNSHFLSAQNA 119 Query: 118 FFDVLTQYSIECLV 131 L + +++ L+ Sbjct: 120 MQKELGKVTLQDLL 133 >gi|302344421|ref|YP_003808950.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641034|gb|ADK86356.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii DSM 2075] Length = 142 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 43/92 (46%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +H+++ + + Y A +IA SE L K++Q L KAG+V + RG Sbjct: 5 IHISEAASLALHTMAYLAAEPGRKASTHEIARVMGASEAHLAKVMQRLGKAGLVVSQRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L + +Q+++L+V A E C Sbjct: 65 GGGFTLAKTPEQVSLLEVYAAAEGQLGEVGCL 96 >gi|254282474|ref|ZP_04957442.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR51-B] gi|219678677|gb|EED35026.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR51-B] Length = 150 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 2/108 (1%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I+E IS +L ++ L ++G+V++VRG GG L R A +I++ V++A Sbjct: 12 PTALAGISERQDISLSYLEQLFSQLRRSGLVKSVRGPGGGYHLGRDAGEISVAAVIQAVN 71 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 ES C K DC +C + + D L S+E LV Sbjct: 72 ESTDTTRCRG--KGDCQKGDTCLTHHLWMNLSDQIHDFLEAISLEDLV 117 >gi|312887338|ref|ZP_07746939.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] gi|311300141|gb|EFQ77209.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] Length = 145 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ L+ + + P +IS+IAE I + FL +IL L AG + + +G Sbjct: 2 LSKKTKYAIKALVSLGKNMGNPPVQISKIAEEEKIPKKFLEQILLDLRNAGFLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA---SHKI-DCPLVGSCGLTSVLRKALNA 117 GG L + +I ++ V++ T+ + C + HK +C +CG+ SV + Sbjct: 62 GGYSLNKDPKEIFLVQVMRITDGPIAMVPCASLNFYHKCEECKSELTCGIRSVFIDVRDV 121 Query: 118 FFDVLTQYSI 127 +L++ SI Sbjct: 122 TLKILSETSI 131 >gi|296123021|ref|YP_003630799.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM 3776] gi|296015361|gb|ADG68600.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus DSM 3776] Length = 154 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+++ DY +R+L+ A + P +S++A + FL I+ L G +E+ G Sbjct: 1 MKLSRKADYALRILITLAARFGESPISLSELARMNDAPKRFLEHIVLDLKSQGWIESSPG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 R+GG L +P +QIT+ V++ Sbjct: 61 RKGGYVLAQPPEQITMGQVIR 81 >gi|28211027|ref|NP_781971.1| RRF2 family protein [Clostridium tetani E88] gi|28203466|gb|AAO35908.1| RRF2 family protein [Clostridium tetani E88] Length = 148 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ ++ +++ + + I+E ISE +L +IL L K G++ + +G Sbjct: 4 MQISTKGRYGLKAMVNIGVYSSLESVTKKSISEMEDISEKYLEQILSVLKKNGLINSKKG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 +GG L R ++IT+ D+++ E V + D ++ C + + L K +N Sbjct: 64 PQGGYTLARNDNEITVGDILRTLEGELEVVNLEEYN--DSNIMELCLKRNVWNKLNKEIN 121 Query: 117 AFFDVLTQYSIECLVR 132 D +T +E LV+ Sbjct: 122 TLVDSIT---LEELVQ 134 >gi|326790786|ref|YP_004308607.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium lentocellum DSM 5427] gi|326541550|gb|ADZ83409.1| transcriptional regulator, BadM/Rrf2 family [Clostridium lentocellum DSM 5427] Length = 151 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R L+ A+H+ D IS IA+ +S ++ ++ L KAGIV++++ Sbjct: 1 MKISTKARYGLRALVDLAVHSSGDQVPLIS-IAQRQELSANYMEQVFSSLKKAGIVKSIK 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKA 114 G +GG L + + IT+ +V++A E + E + D L+ C V K Sbjct: 60 GSQGGYILAKRSCDITVGEVIRAIEGEILIVEEEEARD-DASLIYNSMKQCLQEQVWSKI 118 Query: 115 LNAFFDVLTQYSIECLVRN 133 + V+ ++E L+++ Sbjct: 119 TESICQVIDHITLEDLMKD 137 >gi|253990072|ref|YP_003041428.1| hypothetical protein PAU_02593 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781522|emb|CAQ84685.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 155 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L A+H+ R IA + + + ++L L AG+ + G+ Sbjct: 1 MPTSTRFAVAIHILTDIALHHGQAVRSEDIARSVNTNPTVVRRLLGALADAGLTYSQMGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFV--------AECFASHKI 97 GG L RP +QI++LD+ +A E+ + +C+ H I Sbjct: 61 GGGALLARPPEQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNI 105 >gi|120434688|ref|YP_860375.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] gi|117576838|emb|CAL65307.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] Length = 137 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 5/131 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L Y A D P + S+I+E+ IS+ FL IL L K+G + + +G+ Sbjct: 2 LSKKTKYGIKALAYIARKKDRKPVQASEISESENISQKFLESILLELRKSGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + +I + V++ E + C + + DCP +C + ++ + +A Sbjct: 62 GGYYLIKEPAEIKMTAVIRVLEGPIAMVPCVSLNYYEKCNDCPDEKTCSVHKLMIQLRDA 121 Query: 118 FFDVLTQYSIE 128 +VL + ++E Sbjct: 122 SLNVLGENTLE 132 >gi|171463236|ref|YP_001797349.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192774|gb|ACB43735.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 189 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALREAHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNA 117 GG L RP+ ++++ D++ A +ES +C D G C +T L LN+ Sbjct: 61 PGGGYTLARPSSEVSVADIIVAVDESLDATQCGGKGNCHTDEENHGRC-MTHDLWSNLNS 119 Query: 118 -FFDVLTQYSIECLVRNR 134 + L+ S++ LV+ + Sbjct: 120 KMVEYLSSVSLKDLVQQQ 137 >gi|30261095|ref|NP_843472.1| hypothetical protein BA_0967 [Bacillus anthracis str. Ames] gi|47526250|ref|YP_017599.1| hypothetical protein GBAA_0967 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183932|ref|YP_027184.1| hypothetical protein BAS0909 [Bacillus anthracis str. Sterne] gi|165871693|ref|ZP_02216338.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167635503|ref|ZP_02393816.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167638963|ref|ZP_02397237.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170687574|ref|ZP_02878790.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170707938|ref|ZP_02898387.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177653587|ref|ZP_02935761.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190566555|ref|ZP_03019472.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227816175|ref|YP_002816184.1| hypothetical protein BAMEG_3602 [Bacillus anthracis str. CDC 684] gi|229601398|ref|YP_002865526.1| hypothetical protein BAA_1065 [Bacillus anthracis str. A0248] gi|254682847|ref|ZP_05146708.1| hypothetical protein BantC_03205 [Bacillus anthracis str. CNEVA-9066] gi|254725633|ref|ZP_05187415.1| hypothetical protein BantA1_24776 [Bacillus anthracis str. A1055] gi|254734259|ref|ZP_05191972.1| hypothetical protein BantWNA_03713 [Bacillus anthracis str. Western North America USA6153] gi|254740092|ref|ZP_05197784.1| hypothetical protein BantKB_03564 [Bacillus anthracis str. Kruger B] gi|254753432|ref|ZP_05205468.1| hypothetical protein BantV_13223 [Bacillus anthracis str. Vollum] gi|254758530|ref|ZP_05210557.1| hypothetical protein BantA9_09484 [Bacillus anthracis str. Australia 94] gi|30254709|gb|AAP24958.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47501398|gb|AAT30074.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177859|gb|AAT53235.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164712594|gb|EDR18126.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167513093|gb|EDR88465.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167529121|gb|EDR91875.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170127098|gb|EDS95976.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170668387|gb|EDT19134.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172081391|gb|EDT66465.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190562107|gb|EDV16075.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227003551|gb|ACP13294.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229265806|gb|ACQ47443.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 168 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M + +Y + L+Y + P++ I +AE +SE FL K+ L K GIV + Sbjct: 1 MQYSVGVEYALHCLVYLI---NTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 V G +GG RL + + I+ DV++A E + +C Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|87307172|ref|ZP_01089317.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM 3645] gi|87289912|gb|EAQ81801.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM 3645] Length = 153 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +Y +R + + A +IA + +L K+LQ L KAG+V + RG GG Sbjct: 3 SQTVEYALRAVCHLAFIAPNSCTTEEIATGTKVPLAYLSKVLQGLAKAGVVRSQRGIGGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAEC---FASHKID-CPL 101 + L + D++TIL+VV A + + C ++H + CPL Sbjct: 63 MSLIKRPDELTILEVVNAVDPIQRIRTCPLGLSTHGVKLCPL 104 >gi|326794498|ref|YP_004312318.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Marinomonas mediterranea MMB-1] gi|326545262|gb|ADZ90482.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas mediterranea MMB-1] Length = 166 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P +S I+ IS +L ++ L K +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDKGPVSLSDISARQGISLSYLEQLFAKLRKQSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I + +V A ES C + DC +C + + Sbjct: 61 PGGGYLLSRERSDIFVAQIVDAVNESVDATGCRG--RSDCQGGTTCLTHHLWCDLSDQIH 118 Query: 120 DVLTQYSIECLVRNR 134 D L+ S+E LV+ + Sbjct: 119 DFLSGISLEKLVQRK 133 >gi|319943706|ref|ZP_08017987.1| iron-sulfur cluster assembly transcription regulator IscR [Lautropia mirabilis ATCC 51599] gi|319742939|gb|EFV95345.1| iron-sulfur cluster assembly transcription regulator IscR [Lautropia mirabilis ATCC 51599] Length = 172 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT + + + ++ A+ HN P ++ I++ IS +L ++ L + +VE+ R Sbjct: 1 MRLTTKGRFAVTAMIDLALREHNG-PVTLAGISQRQKISLSYLEQLFGKLRRHQLVESTR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117 G GG L RP+ I + ++ A +E +C K DC G C +T L +LN Sbjct: 60 GPGGGYSLARPSQDINVSSIIFAVDEPLDATQCGG--KQDCFEDGPC-MTHELWTSLNKR 116 Query: 118 FFDVLTQYSIECLVRNR 134 D L S++ LV + Sbjct: 117 MIDYLDSVSLQDLVEQQ 133 >gi|229918428|ref|YP_002887074.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469857|gb|ACQ71629.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp. AT1b] Length = 135 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A D P + +IA + E +L +++ PL G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIALARETDNKPLSLKKIAARHELPEHYLEQLIGPLRNGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 GG +L +P +++T ++++ E + E Sbjct: 61 AYGGYQLVKPPEEVTAGEIIRLLEGPLAIVE 91 >gi|118476599|ref|YP_893750.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118415824|gb|ABK84243.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] Length = 170 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L K GIV +V G +GG Sbjct: 8 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPGVKGGY 67 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 68 RLAKSPEDISFWDVIEAVEGPKPIFQC 94 >gi|13471616|ref|NP_103182.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022358|dbj|BAB48968.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 174 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 6/112 (5%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + +AE +S +L K L L A I+E+V G GG RL R A++IT+LD+V A E Sbjct: 29 AALAECFGLSASYLLKHLNMLTAASILESVPGPAGGYRLARAAERITLLDIVLAIEGREP 88 Query: 88 VAECF-----ASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 C KID V CG+ + + KA A+ L + + +V + Sbjct: 89 AFRCGEIRRNGPVKIDASAYVKPCGINAAMLKAERAYRAALAEVKLSDIVAD 140 >gi|218291270|ref|ZP_03495246.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|218238818|gb|EED06030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] Length = 125 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 10/116 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 +D P + IAE +SE +L +++ PL G V ++RG GG L R +I I DV+ Sbjct: 10 QSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRGAYGGYVLARHPREIVIEDVL 69 Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 A E + + +ID GL + + A DVL+ +++ LV R Sbjct: 70 LALEGPITIVD----EEID------DGLQVLWDRLREAIHDVLSSMTLQDLVELRQ 115 >gi|196037505|ref|ZP_03104816.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196044146|ref|ZP_03111382.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|225862920|ref|YP_002748298.1| hypothetical protein BCA_1009 [Bacillus cereus 03BB102] gi|229183282|ref|ZP_04310512.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] gi|196024785|gb|EDX63456.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196031747|gb|EDX70343.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|225789674|gb|ACO29891.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|228600421|gb|EEK58011.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] Length = 168 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L K GIV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|65318375|ref|ZP_00391334.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] Length = 168 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L K GIV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|114764573|ref|ZP_01443777.1| iron-sulfur cluster assembly transcription factor IscR, putative [Pelagibaca bermudensis HTCC2601] gi|114542949|gb|EAU45969.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. HTCC2601] Length = 153 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 11/118 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + I++ +S +L ++ L +AG+VE+VRG Sbjct: 1 MKLSTKGRYAMVALTDIAMQPDGVLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR-KALN 116 GG RL RPA +I ++D++ A +E+ A HK G+ G TS R ++LN Sbjct: 61 PGGGYRLARPASEIRVVDILGAVDET-----VDAMHKG----AGASGATSGSRAQSLN 109 >gi|291534433|emb|CBL07545.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis M50/1] gi|291541272|emb|CBL14383.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis XB6B4] Length = 143 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A++N P + IA IS+ +L +I+ L KA V+++RG Sbjct: 1 MRISTKGRYALRLMLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALN 116 +GG L + ++ T+ +++ TE S C C + C V +K A+N Sbjct: 61 AQGGYILTKRPEEYTVGMILRLTEGSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAIN 119 Query: 117 AFFDVLT 123 D +T Sbjct: 120 QVVDSIT 126 >gi|119469041|ref|ZP_01612025.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Alteromonadales bacterium TW-7] gi|119447293|gb|EAW28561.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Alteromonadales bacterium TW-7] Length = 163 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG L R A I++ D++ A +ES C ++ Sbjct: 61 PGGGYLLGREAGVISVGDIITAVDESVDATRCQGAN 96 >gi|260463874|ref|ZP_05812071.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259030471|gb|EEW31750.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 149 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ + ++ IA A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLSGLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I I VV+ + C + + DC +C + ++ + A Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDCD-EATCQVRHMMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL S+ + Sbjct: 121 IAEVLDNRSLAAM 133 >gi|251798334|ref|YP_003013065.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247545960|gb|ACT02979.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 139 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAGKFGEGPISLKSIAERNQLSEHYLEQLVAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + + IT DV++ E Sbjct: 61 AYGGYILSKEPETITAGDVIRILE 84 >gi|296447784|ref|ZP_06889698.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296254703|gb|EFH01816.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 144 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + YG++ L++ A + IA+ I FL IL L AGI+ + +G+ G Sbjct: 2 LSNKAKYGLKALIHLA-GAEGQCLAGDIAKENNIPRKFLDAILVELRNAGIINSKKGKHG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNAF 118 G L RPA+++T+ +++ + C + DCP +C + ++ + Sbjct: 61 GYLLARPAEKVTVGQIIRILDGPLAPIACASKTAYQRCADCPDEDACAIHDIMLDVRESI 120 Query: 119 FDVLTQYSIECLVRNRSS 136 +L + SI L R R S Sbjct: 121 ALILDRTSIASL-RERGS 137 >gi|149179559|ref|ZP_01858095.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797] gi|148841602|gb|EDL56029.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797] Length = 141 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+K +Y +R + A P +AE + +L ++LQ L +GIV + G +G Sbjct: 2 LSKTHEYALRAVACLAGQPGKPASADFLAERTKVPRRYLTRVLQDLAASGIVSSKSGPKG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101 G L + ++TILD+V A + C SH CPL Sbjct: 62 GYELIAESGELTILDIVNAIAPLERIKACPLGLKSHTSLCPL 103 >gi|320533390|ref|ZP_08034080.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320134407|gb|EFW26665.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 165 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K ++ L+ + + +A +S +L K LQ L AGIV +V G Sbjct: 1 MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG RL +PA ++++ DVV A + + +C F K G C + + Sbjct: 61 SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFIDQKSQILASGLCSINRAMS 120 Query: 113 KALNAFFDVLTQYSIECLV 131 +A +A+ L SI L Sbjct: 121 RAEDAWRASLAGTSIADLA 139 >gi|118594588|ref|ZP_01551935.1| hypothetical protein MB2181_02930 [Methylophilales bacterium HTCC2181] gi|118440366|gb|EAV46993.1| hypothetical protein MB2181_02930 [Methylophilales bacterium HTCC2181] Length = 157 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H D P ++ I+ IS +L ++ + + G+V++VRG Sbjct: 1 MKLTTKGRFAVTAMLDLAMHETDSPVTLTAISARQSISLSYLEQLFSQMRRKGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG + IT+ ++V A +E +C S +C G C +T L +LN Sbjct: 61 PGGGYLSAQNHKDITVKNIVTAVDEKLDSTQCGGSE--NCHEGGRC-ITHDLWVSLNTKV 117 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 D L S++ L+ + K Sbjct: 118 LDYLDGLSLQDLIDGQKDRNK 138 >gi|254518634|ref|ZP_05130690.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912383|gb|EEH97584.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 143 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ AI+ D N I I+E ISE +L +I L K GI+ +G Sbjct: 1 MKISTKGRYGLRALIDLAINIDSENVSIKTISERQNISERYLEQIFSLLRKGGIIVGRKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFV 88 +GG L + ++TI +++K E E+ F+ Sbjct: 61 AQGGYILGKNPSELTISEILKVLEGENIFI 90 >gi|124514277|gb|EAY55791.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] Length = 141 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R +Y +R L+ A+ D +QIA I + FL +IL LVK GIVE+ RG R Sbjct: 4 RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63 Query: 62 GGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 G L + ++I++ ++ E FF I L S +R L Sbjct: 64 GKYCLGQRPEEISLYRLLAMVEGEIVFFDPATPPGPAIQT-------LYSDIRDGLVGVL 116 Query: 120 DVLTQYS-IECLVRNRSSIKKIF 141 D T + +E ++R+ + +F Sbjct: 117 DRFTLDAFVEAAGKDRNETRPMF 139 >gi|78063784|ref|YP_373692.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|77971669|gb|ABB13048.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] Length = 173 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 11/135 (8%) Query: 8 DYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YG+ L+Y A + + +AE +S + K+ L KAGIV + G RGG Sbjct: 9 EYGLHCLLYLADTSTGVRDASVRDLAEMQGVSVDYAAKLFTRLAKAGIVVSSEGIRGGFA 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RPA I++ DVV+A + + +C F G+C + +V++ A Sbjct: 69 LARPARDISVQDVVEAIDGDKRLFDCREVRGQCAVFEGEPPAWATRGTCSIHAVMQAAER 128 Query: 117 AFFDVLTQYSIECLV 131 A + L + S+ L Sbjct: 129 AMREELKKQSLADLA 143 >gi|86157269|ref|YP_464054.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773780|gb|ABC80617.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-C] Length = 157 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 2/145 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY I +L A + +A+ + + K+ + L KAG+V + RGR Sbjct: 2 IRLSKLTDYAIVILANLARAGEGTLTAQDLADRSKVPLPTVSKLCKELSKAGLVLSHRGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R AD I+I ++V+A E + C + C L +C + A Sbjct: 62 HGGYGLARSADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAI 121 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143 L + +V S+ K +A Sbjct: 122 QGALRGLPLSSIVLQHSNDPKDPDA 146 >gi|332532350|ref|ZP_08408230.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis ANT/505] gi|332038217|gb|EGI74663.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis ANT/505] Length = 163 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A I++ D++ A +ES C Sbjct: 61 PGGGYLLGREAGVISVGDIISAVDESVDATRC 92 >gi|312196443|ref|YP_004016504.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c] gi|311227779|gb|ADP80634.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c] Length = 159 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 6 RTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R G+ ++C + P +++AE +S +L K LQ L +A +V++V+G+ G Sbjct: 2 RLSGGVETALHCCVVLTAAAEPVPAARLAELHGVSATYLAKQLQALSRARLVQSVQGKAG 61 Query: 63 GVRLCRPADQITILDVVKATE 83 G L RP ++I +LDVV+A + Sbjct: 62 GYVLTRPPEEIKVLDVVEAVD 82 >gi|323341640|ref|ZP_08081873.1| iron-sulfur cluster assembly transcription regulator IscR [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464065|gb|EFY09258.1| iron-sulfur cluster assembly transcription regulator IscR [Erysipelothrix rhusiopathiae ATCC 19414] Length = 141 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ RT YGI + Y I++ + IAE IS+++L ++ L +A +V+ V+G Sbjct: 1 MKLSARTRYGIAAMTYMHINDQELTTLVNIAEHLNISKIYLEQVFSSLKQANLVDAVKGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87 GG L + + + +++ A E S F Sbjct: 61 AGGYYL--KSKECNMFNILNALEPSLF 85 >gi|94263797|ref|ZP_01287603.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1] gi|93455808|gb|EAT05975.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1] Length = 131 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R L Y + + +IA I FL KI + L AG+V RG Sbjct: 1 MQITRETDYALRCLYYLVRRPEQVCMVDEIAAEMEIPRSFLAKIARKLAAAGLVVAHRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNA 117 GG L R + I+I +V+ A E + C K C C L V LR+ + A Sbjct: 61 GGGFMLIRKPETISIHEVICAIEGEVALNICTGEEK-RCQRSDHCPLHPVWVNLRRDVEA 119 Query: 118 FFD 120 Sbjct: 120 LLQ 122 >gi|254303065|ref|ZP_04970423.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323257|gb|EDK88507.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 142 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 5/93 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + NRI ++IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQDR--NRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE 90 +G GG +L + IT+ D V+ E+ + + Sbjct: 59 KGANGGYKLNKEPKDITLRDAVETIEDEIIIKD 91 >gi|288555374|ref|YP_003427309.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4] gi|288546534|gb|ADC50417.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4] Length = 139 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IA+ +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + A++IT D+++ E Sbjct: 61 AYGGYMLAKDANEITAGDIIRVLE 84 >gi|182679703|ref|YP_001833849.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635586|gb|ACB96360.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 162 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +AG+V T+ G GG RL RP + Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLGPSGGYRLARPPTE 73 Query: 73 ITILDVVKATE 83 +T LD+V+A E Sbjct: 74 LTFLDIVEAVE 84 >gi|304440166|ref|ZP_07400057.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371429|gb|EFM25044.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 141 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 45/99 (45%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY R+ Y A ++I+E I E F +IL+ L AGI + RG Sbjct: 1 MRITQEVDYAFRICSYLASKKGEVVAATEISETQAIPERFTLRILRKLNLAGITDAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L R + + ++++A + + C S C Sbjct: 61 YGGYYLVRDKYDLNLYEIIEAIDGPIQINRCLRSEDAYC 99 >gi|160872032|ref|ZP_02062164.1| FeS assembly SUF system regulator [Rickettsiella grylli] gi|159120831|gb|EDP46169.1| FeS assembly SUF system regulator [Rickettsiella grylli] Length = 157 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY + ++ Y + H +IAE I+ K+L+ L G++ RG Sbjct: 2 LRLSKLTDYAVVIMAYLSQHPGLAINAKKIAERTGIALPTTSKLLKHLTHRGLLHANRGI 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119 RGG L PA I++ +++ E + EC SH+ C C + R+ ++AF Sbjct: 62 RGGYLLAYPAADISLGTLIQTLEGPIALTEC--SHRTRTCRFAQQCTIRDNWRR-ISAFI 118 Query: 120 DV 121 + Sbjct: 119 QM 120 >gi|297584735|ref|YP_003700515.1| BadM/Rrf2 family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143192|gb|ADH99949.1| transcriptional regulator, BadM/Rrf2 family [Bacillus selenitireducens MLS10] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IA +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALARKYGEGPVSLKSIAHEHALSEHYLEQLIAPLRNAALVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + + IT DV++ E Sbjct: 61 AYGGYMLAKEPESITAGDVIRVLE 84 >gi|166366256|ref|YP_001658529.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166088629|dbj|BAG03337.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 147 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V + RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 +GG +L RPA++I++ +++A E+ Sbjct: 61 AQGGYQLARPANRISLGQILEAVGET 86 >gi|328883585|emb|CCA56824.1| Predicted transcriptional regulator of 4-carboxymuconolactone decarboxylase, Rrf2 family [Streptomyces venezuelae ATCC 10712] Length = 157 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/44 (54%), Positives = 31/44 (70%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +L K LQ L +AGIV +V G +GG RL R D+IT++DVV A E Sbjct: 39 YLNKQLQALARAGIVTSVSGPKGGFRLARALDRITLMDVVAAIE 82 >gi|83593363|ref|YP_427115.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576277|gb|ABC22828.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 154 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A H+ P ++ IA+ IS +L ++ L K G+V++VRG Sbjct: 1 MRLSTKGRYAVMAMADLAAHSGGKPVALADIADRQEISLSYLEQLFGRLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 GG L R A + I D++ A +E C C G C + + N Sbjct: 61 PGGGYLLSREAGDMRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCMTHDLWEELANQI 120 Query: 119 FDVLTQYSIECLVRNR 134 + L+ S+E + + R Sbjct: 121 YLYLSSVSLEDVTQRR 136 >gi|312115350|ref|YP_004012946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311220479|gb|ADP71847.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 152 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 10/145 (6%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ + + A + ++S+IAEA I + FL +I L KAG V + +G+ Sbjct: 2 LTAKGKYGLKAMTHLARLAPGEIAQVSEIAEANSIPKKFLDQIFSELRKAGFVFSKKGKA 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF------ASHKIDCPLVGSCGLTSVLRKAL 115 GG L + A I + D+V+ + C A DC G C + +++ + Sbjct: 62 GGYALAKEASSINVGDIVRVLDGPLAPIPCASVTAYRACDDCDC---GECEVRAIMVEVR 118 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKI 140 NA VL ++ +S+ +++ Sbjct: 119 NAISVVLDNRTLAQFAGLKSTRRRV 143 >gi|302868852|ref|YP_003837489.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315504679|ref|YP_004083566.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|302571711|gb|ADL47913.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] gi|315411298|gb|ADU09415.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 156 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R A P QIA A I FL IL L + GI Sbjct: 1 MRLSARVDYALRAAAELASVAVGGTTGRSRPVTAEQIARAQDIPPKFLESILLQLRRGGI 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVK 80 V RG GG L RPA +I++ +V++ Sbjct: 61 VHAQRGPEGGYWLARPAGEISLAEVIR 87 >gi|254491784|ref|ZP_05104963.1| rrf2 family protein (putative transcriptional regulator) [Methylophaga thiooxidans DMS010] gi|224463262|gb|EEF79532.1| rrf2 family protein (putative transcriptional regulator) [Methylophaga thiooxydans DMS010] Length = 135 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ++ I+E IS +L ++ L K G+V + RG GG RL R A+ IT+LDV+ A +E Sbjct: 15 LADISERQGISLSYLEQLFARLRKQGLVSSSRGPGGGYRLSRSAEDITVLDVISAVDEKV 74 Query: 87 FVAEC 91 +C Sbjct: 75 DSTQC 79 >gi|288817531|ref|YP_003431878.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter thermophilus TK-6] gi|288786930|dbj|BAI68677.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter thermophilus TK-6] gi|308751134|gb|ADO44617.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter thermophilus TK-6] Length = 151 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++ +IAEA I + FL KI L + ++ + +G GG L P +QITI+DV++ +E Sbjct: 26 KVEEIAEAQKIPKPFLSKIFHKLARERVLRSYKGPTGGFALAVPPEQITIMDVIRYLDED 85 Query: 86 FFVAEC 91 + + C Sbjct: 86 YKLDYC 91 >gi|290962918|ref|YP_003494100.1| hypothetical protein SCAB_86361 [Streptomyces scabiei 87.22] gi|260652444|emb|CBG75577.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 133 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA++ + + K + L G++E RGR GG+ L + ++V+ E+ Sbjct: 17 QIADSMNVPYTHMAKAIAQLQHLGVIEARRGRNGGLTLTDAGRAAPVGNLVRTLEQDREA 76 Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 C CPL G+C L LR+A AF+ L + ++ LV Sbjct: 77 VVC--EGDTPCPLSGACRLRRALREAQEAFYSSLDKVTVGDLV 117 >gi|23336286|ref|ZP_00121509.1| COG1959: Predicted transcriptional regulator [Bifidobacterium longum DJO10A] gi|189440615|ref|YP_001955696.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|189429050|gb|ACD99198.1| Putative transcriptional regulator [Bifidobacterium longum DJO10A] Length = 140 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L Y A H P++I +AE C + + K+++PL AG++ T G GG L RPA +I Sbjct: 15 LDYRATH--LPSQI--LAENICTNAARVRKVMRPLASAGLIATKEGTEGGYALARPAAEI 70 Query: 74 TILDVVKATEESF 86 T+ V +AT +F Sbjct: 71 TLRAVAEATGTTF 83 >gi|145222864|ref|YP_001133542.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315443329|ref|YP_004076208.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Mycobacterium sp. Spyr1] gi|145215350|gb|ABP44754.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum PYR-GCK] gi|315261632|gb|ADT98373.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. Spyr1] Length = 158 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATVGDGALVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 R GG L RPA I+I DV++ + D P G + LT V R + Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLG--DLPYSGPTASLTDVWRALRASM 118 Query: 119 FDVLTQYSI 127 VL Q S+ Sbjct: 119 RSVLEQTSL 127 >gi|307824109|ref|ZP_07654336.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] gi|307734893|gb|EFO05743.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] Length = 149 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 49/96 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K TDY +L + A +I+ I+ + KIL+ LV A ++ + RG Sbjct: 2 LRLSKLTDYATVILSFMAREKAQVRAAMEISTVTGIALPTVSKILKLLVNADVLISTRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 +GG L R ++I++ V+ A E + EC SH+ Sbjct: 62 KGGYVLARMPEEISVAAVISALEGPIALTECSISHQ 97 >gi|295399330|ref|ZP_06809312.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312110109|ref|YP_003988425.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294978796|gb|EFG54392.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311215210|gb|ADP73814.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 138 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L +IT DV++ E Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLE 84 >gi|71907577|ref|YP_285164.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica RCB] gi|71847198|gb|AAZ46694.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas aromatica RCB] Length = 167 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + +M A+ +D P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMMDLALRGDDGPVALASISERQKISLSYLEQLFGKLRRYKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG + RP + + + D+++A +E +C +C C +T L LN Sbjct: 61 PGGGYCIARPLELVRVADIIRAVDEQLDATQCGGRE--NCHDEHRC-MTHDLWTTLNVKM 117 Query: 119 FDVLTQYSIECLV 131 FD L+ ++ LV Sbjct: 118 FDYLSSVTLADLV 130 >gi|74317181|ref|YP_314921.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056676|gb|AAZ97116.1| Iron-sulphur cluster assembly transcription factor IscR [Thiobacillus denitrificans ATCC 25259] Length = 153 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I+E IS +L ++ L + +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMLDLALRGGKNPVTLAGISERQDISLSYLEQLFSRLRRHALVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L +P +++ D+++A +E +C K +C C LT L LN+ Sbjct: 61 PGGGYYLAKPLADVSVADIIRAVDEPIDATQCGG--KENCHDEHRC-LTHDLWVGLNSHI 117 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 +D L ++ LV + K+ Sbjct: 118 YDYLDNVTLASLVAKQDECKE 138 >gi|291614714|ref|YP_003524871.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584826|gb|ADE12484.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans lithotrophicus ES-1] Length = 160 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMVDLAMRGGKGPVTLAGISERQKISLSYLEQLFGKLRRNNVVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L RPA++I+++D++ A +E+ +C + +C C LT L LN A Sbjct: 61 PGGGYCLARPANKISMVDIITAVDEALDATQC--GTRGNCADGKPC-LTHDLWFGLNEAI 117 Query: 119 FDVLTQYSIECLV 131 + L++ +++ LV Sbjct: 118 HEYLSKINLQQLV 130 >gi|190890245|ref|YP_001976787.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218507620|ref|ZP_03505498.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] gi|190695524|gb|ACE89609.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 166 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + +AE +S +L K LQ L AGI++TV G +GG RL + A++I++LD++ A E Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAAEEISLLDILLAVE 84 >gi|167464005|ref|ZP_02329094.1| transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 76 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + IAE +SE +L +++ PL AG+V+++RG GG L RPA+QIT +++ E Sbjct: 7 LKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQITTGQIIRVLE 63 >gi|86356200|ref|YP_468092.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280302|gb|ABC89365.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|327192636|gb|EGE59577.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 166 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + +AE +S +L K LQ L AGI++TV G RGG +L + A++I++LD++ A E Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYKLAKAAEEISLLDILLAVE 84 >gi|70732916|ref|YP_262687.1| rrf2 family protein [Pseudomonas fluorescens Pf-5] gi|68347215|gb|AAY94821.1| rrf2 family protein, putative [Pseudomonas fluorescens Pf-5] Length = 146 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103 +VKA I+++ RG GG+ L RPA IT+ +V A +ES +AE KID P G Sbjct: 48 MVKANILKSWRGAHGGLTLARPASDITLREVYDAVQESSLIAE-----KIDNPFSG 98 >gi|229085778|ref|ZP_04218006.1| Transcriptional regulator [Bacillus cereus Rock3-44] gi|228697577|gb|EEL50334.1| Transcriptional regulator [Bacillus cereus Rock3-44] Length = 131 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + Q+A+ +S +L KIL LVKAG++E+ G GG + R + I+ LDV+ A E Sbjct: 15 VEQLAKIQNLSPTYLSKILTKLVKAGLIESNPGVNGGYSIVRRSHNISFLDVIHAIEGQT 74 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 + C H+ C + +V+ A N D L + I + + S KK Sbjct: 75 TLFSCSLEHE-KLFRNDDCLIENVMIDAENKMKDELNKKYIIDIAKQIQSKKK 126 >gi|121605191|ref|YP_982520.1| BadM/Rrf2 family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594160|gb|ABM37599.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas naphthalenivorans CJ2] Length = 178 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L R A +IT+ D++ + +E +C K +C GS +T L +LN+ Sbjct: 61 PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGSRCMTHDLWSSLNSRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L S++ LV ++ Sbjct: 119 VEFLDSVSLQKLVDDQ 134 >gi|284050305|ref|ZP_06380515.1| transcriptional regulator, BadM/Rrf2 family protein [Arthrospira platensis str. Paraca] gi|291569875|dbj|BAI92147.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 147 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 4/100 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ A + + P + IA I +L K+L + + G+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLAMLGSSGPVSVRAIASRQNIPAPYLEKLLIEMRRRGLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 +GG +L P QI++ +++A E+ E ++H+ D Sbjct: 61 SQGGYKLAYPPAQISLGQILEAVGETI---EPLSNHQPDA 97 >gi|269119309|ref|YP_003307486.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sebaldella termitidis ATCC 33386] gi|268613187|gb|ACZ07555.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis ATCC 33386] Length = 164 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 8/108 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH + +Y + L+Y A + P + ++AE ISE +L KI L K GIV+ G Sbjct: 1 MHYSVGVEYALHCLIYLATPSVKPVLTVKELAEFQGISETYLSKIFTKLSKNGIVKATPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 GG +L + +T DVV+A E + C ++G+C L Sbjct: 61 VTGGYQLKQDPSVVTFWDVVQAVEGEKQIFRCKN-------IIGTCAL 101 >gi|317490853|ref|ZP_07949289.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920400|gb|EFV41723.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacteriaceae bacterium 9_2_54FAA] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A +I + V+ A +ES C Sbjct: 61 PGGGYLLGKDAAEIAVGTVITAVDESVDATRC 92 >gi|56551318|ref|YP_162157.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241760972|ref|ZP_04759061.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56542892|gb|AAV89046.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374591|gb|EER64052.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 135 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVR 58 M L+ TDY + VL H ++ + AE + + K++ L A ++ ++R Sbjct: 1 MRLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 G GG L RPA++IT+ DVV+A E ++ C + C CG+ Sbjct: 61 GMGGGFTLARPAEEITLADVVEAIEGPIAMSSCDNKESL-CKFSAECGM 108 >gi|34763186|ref|ZP_00144152.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742213|ref|ZP_04572694.1| rrf2 family protein [Fusobacterium sp. 4_1_13] gi|256845486|ref|ZP_05550944.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_36A2] gi|294785208|ref|ZP_06750496.1| RRF2 family protein [Fusobacterium sp. 3_1_27] gi|27887155|gb|EAA24260.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429861|gb|EEO40073.1| rrf2 family protein [Fusobacterium sp. 4_1_13] gi|256719045|gb|EEU32600.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_36A2] gi|294486922|gb|EFG34284.1| RRF2 family protein [Fusobacterium sp. 3_1_27] Length = 141 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L +I + + + ++ V +C K CG T + K N Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L++ S++ + N I Sbjct: 121 AMTKILSETSLQDFINNGKRI 141 >gi|317056183|ref|YP_004104650.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315448452|gb|ADU22016.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 143 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M++T DY +R+ C + I++ C++ F KIL+ LV AG+V++ +G Sbjct: 1 MYITLEADYAVRITAALCRAEGKLDAKT--ISDQTCVTLRFSLKILRKLVSAGLVQSFKG 58 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPLVGS-CGLTSVL 111 +GG + IT+ V++A E + AEC CP + C +T ++ Sbjct: 59 TQGGYMIAMEPKDITLRMVIEAIEGKYCFSRCLQEDAECSRGASGKCPFQDAFCDITKMV 118 Query: 112 RKALNA--FFDVLTQYSI 127 + L++ F ++ ++Y + Sbjct: 119 SEKLDSHNFAELNSKYEV 136 >gi|261855791|ref|YP_003263074.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261836260|gb|ACX96027.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 168 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +++ +DY I +L A +++ ++ + K+++ L ++ + +GR Sbjct: 2 LKISRMSDYAIVLLTAMAKLASEQQTARALSDQTGLTLPTVGKLVKMLAANELLCSQQGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPAD+I++ D++++ + + ECF DC CGL + + Sbjct: 62 HGGYRLARPADKISLADIIESIDGPIAMTECFTVEH-DCEREADCGLKPHWKAINDGVRQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 +L + ++ L+ + F+ Sbjct: 121 LLDRTTLAELIEPIPQVPVWFD 142 >gi|157371863|ref|YP_001479852.1| DNA-binding transcriptional regulator IscR [Serratia proteamaculans 568] gi|189044752|sp|A8GHY4|ISCR_SERP5 RecName: Full=HTH-type transcriptional regulator iscR gi|157323627|gb|ABV42724.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 164 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A +I + V+ A +ES C Sbjct: 61 PGGGYLLGKDASEIAVGAVITAVDESVDATRC 92 >gi|87199748|ref|YP_497005.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135429|gb|ABD26171.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium aromaticivorans DSM 12444] Length = 144 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 14/132 (10%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A R+ IAE I FL IL + + GIV + RGR Sbjct: 2 LSQKTRYTIRALQHLADTWGQGAVRLDAIAEKQNIPRKFLTVILSEMAREGIVISHRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----------KIDCPLVGSCGLTSVL 111 GG L P I D+++ T S + C + + ++DC L GL L Sbjct: 62 GGYELALPPVDIRYGDIIRLTRGSLALVPCASRNAHEHCNNCLPEVDCRLR---GLMLQL 118 Query: 112 RKALNAFFDVLT 123 R A D +T Sbjct: 119 RDETAAILDRIT 130 >gi|163848758|ref|YP_001636802.1| rrf2 family transcriptional regulator [Chloroflexus aurantiacus J-10-fl] gi|222526707|ref|YP_002571178.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670047|gb|ABY36413.1| transcriptional regulator, Rrf2 family [Chloroflexus aurantiacus J-10-fl] gi|222450586|gb|ACM54852.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus sp. Y-400-fl] Length = 146 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DYG+R L A + + P + IA I +L ++L L +AG+VE++RG Sbjct: 1 MRISSKGDYGLRALFDLAQRYGEGPIQSEAIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L R + IT+L+V+ E AE Sbjct: 61 PQGGHLLARSPESITLLEVLTVLEGPILPAE 91 >gi|94311031|ref|YP_584241.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354883|gb|ABF08972.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus metallidurans CH34] Length = 144 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG V T G Sbjct: 1 MSTSSRFAVAVHILTLLA-QAEGPVPSSMIAGSVGTNPALIRRMIGALTEAGFVTTTMGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFV 88 GG L RPA QIT+L+V +ATE + + Sbjct: 60 TGGAMLTRPASQITLLEVFQATETTALI 87 >gi|270264746|ref|ZP_06193011.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041429|gb|EFA14528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 164 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A +I + V+ A +ES C Sbjct: 61 PGGGYLLGKEASEIAVGAVITAVDESVDATRC 92 >gi|239827836|ref|YP_002950460.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. WCH70] gi|239808129|gb|ACS25194.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70] Length = 138 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L +IT DV++ E Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLE 84 >gi|308070333|ref|YP_003871938.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305859612|gb|ADM71400.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L +T D+++ E Sbjct: 61 AYGGYILANEPAGVTAGDIIRVLE 84 >gi|256389580|ref|YP_003111144.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256355806|gb|ACU69303.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 151 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 24/144 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + DY +RV++ A H PN + + + + F+ IL L +A ++ + R Sbjct: 1 MQISAKADYAVRVMLELAAHG--PNLVKSTVLIDHQGLPRKFVESILVELRRADLIRSHR 58 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L RPA I+I V++A +D PL GL + NA Sbjct: 59 GAEGGYTLARPASAISIGQVIRA---------------VDGPLAEVRGLRPHETEYSNA- 102 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 Q+ + V R++++K+ + Sbjct: 103 ----AQHLSDVWVAARAALRKVLD 122 >gi|332188880|ref|ZP_08390586.1| transcriptional regulator family protein [Sphingomonas sp. S17] gi|332011089|gb|EGI53188.1| transcriptional regulator family protein [Sphingomonas sp. S17] Length = 145 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 13/137 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L A H D P R IA + + + +L L AG+ + G RGG L RP+ + Sbjct: 1 MLALLADHGDMPLRSEDIAASVNSNAAVVRALLLRLASAGLTRSQLGNRGGAMLARPSSE 60 Query: 73 ITILDVVKATEESFFVAECFASHK--------IDCPLVGSC-GLTSVLRKALNAFFDVLT 123 I ++DV A E+ F FA H+ ID + S + + +R+AL LT Sbjct: 61 IRLVDVYHAVEDRNF----FAFHRQPPEGESPIDRHITPSLEAMLTPVREALEEKLADLT 116 Query: 124 QYSIECLVRNRSSIKKI 140 + +R R+ + +I Sbjct: 117 LDDVLTDIRARAGVSQI 133 >gi|317049145|ref|YP_004116793.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b] gi|316950762|gb|ADU70237.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + A I + V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKDAGAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117 Query: 119 FDVLTQYSIECLVRNR 134 + L ++ LV N+ Sbjct: 118 SEFLNNITLAELVNNQ 133 >gi|209964918|ref|YP_002297833.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209958384|gb|ACI99020.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 156 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A + +P +++IA+ IS +L ++ L K G+V++VRG Sbjct: 1 MRLSTKGRYAVMAMVDLAKSSKGHPVALAEIADRQEISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L PA+ + I D++ A +E C A C Sbjct: 61 PGGGYLLASPAEAMRISDIILAVDEPIRATRCAAHSPAGC 100 >gi|83646262|ref|YP_434697.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634305|gb|ABC30272.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 156 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L A+H R IA + + + ++L L +AG+ + G Sbjct: 1 MPTSTRFAVAIHILADLALHKGKAVRSEDIACSVNTNAAVVRRLLGVLAEAGMTRSQLGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALNA 117 GG L RPAD IT+LDV +A EE + + C + C +TSVL + ++A Sbjct: 61 GGGALLARPADAITLLDVYQAVEEPNYFVLHRSKPNPKCYI--GCNITSVLEDEFQRISA 118 Query: 118 FFDV-LTQYSIECLVR 132 D L Q +I + R Sbjct: 119 TMDASLAQTTIADVAR 134 >gi|194014249|ref|ZP_03052866.1| Rrf2 family protein [Bacillus pumilus ATCC 7061] gi|194013275|gb|EDW22840.1| Rrf2 family protein [Bacillus pumilus ATCC 7061] Length = 137 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 6/106 (5%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IAE+ + + K++ L +AG++E RG GG L RPA++IT+LDV +A + S Sbjct: 30 IAESVNSNPAIVRKMMAMLKRAGLIEIRRGV-GGAYLKRPAEEITLLDVYRAVDVSED-E 87 Query: 90 ECFASHK--IDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131 E F H+ I CP+ + L S L++A +A + L Q +I+ L+ Sbjct: 88 ELFNFHQPVIACPIGQAMDTRLRSELKEAQSALENHLKQVTIQQLL 133 >gi|157693157|ref|YP_001487619.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157681915|gb|ABV63059.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL A +V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L ++IT D+++ E E + + Sbjct: 61 AYGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEE 97 >gi|115522626|ref|YP_779537.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516573|gb|ABJ04557.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisA53] Length = 153 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 49/96 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A H D IAE IS L K+L+ LV+A ++E+VRG Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYDISLNHLAKVLRTLVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG ++T+LD++ E++ E AS K Sbjct: 61 GGGYTFSGNPKRVTLLDIIALFEDTSPDPEQAASDK 96 >gi|312116284|ref|YP_004013880.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311221413|gb|ADP72781.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 150 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ ++Y A D P I++IAEA I + FL IL L G++ + +G+ Sbjct: 2 LSAKCKYGLKAMVYIARRGDKGPVLIAEIAEAENIPKKFLDVILLELKVNGMLTSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKA-TEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALN 116 GG +L R +IT+ D+V+ + C + DC +C + SV+ + + Sbjct: 62 GGYQLARRPGKITVADIVRVLGGPNLAPVPCVSKLNYRPCTDCRDEQTCVIRSVMLEVRD 121 Query: 117 AFFDVLTQYSIE 128 A VL ++E Sbjct: 122 AIAAVLENVTLE 133 >gi|291532974|emb|CBL06087.1| Predicted transcriptional regulator [Megamonas hypermegale ART12/1] Length = 75 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+++ P RI IAE IS+ +L +I+ L KAG V+++RG Sbjct: 1 MKISTKGRYALRLMLDIALNDAKTPVRIKDIAERQQISDKYLEQIVSSLNKAGFVKSLRG 60 Query: 60 RRGGVRLCR 68 +GG RL + Sbjct: 61 PQGGYRLTK 69 >gi|126653988|ref|ZP_01725823.1| YrzC [Bacillus sp. B14905] gi|169829331|ref|YP_001699489.1| putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|126589505|gb|EAZ83648.1| YrzC [Bacillus sp. B14905] gi|168993819|gb|ACA41359.1| Putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L P +I+ V+ E Sbjct: 61 AYGGYMLANPPSEISAAHVISVLE 84 >gi|325831666|ref|ZP_08164883.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] gi|325486537|gb|EGC88986.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] Length = 179 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + Y +R LM C +++ +++E IS +L ++ +PLV+AG++ +VRG+ Sbjct: 38 VSTKGRYALR-LMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGK 96 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105 GG L + I DV++A E S C + CP G C Sbjct: 97 GGGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGEC 142 >gi|16126861|ref|NP_421425.1| RrF2 family protein [Caulobacter crescentus CB15] gi|221235644|ref|YP_002518081.1| Rrf2 family protein [Caulobacter crescentus NA1000] gi|13424201|gb|AAK24593.1| RrF2 family protein [Caulobacter crescentus CB15] gi|220964817|gb|ACL96173.1| Rrf2 family protein [Caulobacter crescentus NA1000] Length = 143 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ Y +R ++ A D ++AE FL IL L + G+V + RG+ G Sbjct: 2 LSQKARYALRAMIELA-RADTQVTAGELAERADAPRKFLEAILLSLSREGLVISRRGKFG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118 G L R AD I+ ++++ + + C + DC + +C L L +A +A Sbjct: 61 GYVLARDADAISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120 Query: 119 FDVLTQYSI 127 VL YS+ Sbjct: 121 AAVLEGYSL 129 >gi|32475221|ref|NP_868215.1| a transcriptional regulator [Rhodopirellula baltica SH 1] gi|32445762|emb|CAD78493.1| conserved hypothetical protein-putative a transcriptional regulator [Rhodopirellula baltica SH 1] Length = 124 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +AE + +L ++LQ L AG+V + G GG LC P D +TILDVV Sbjct: 8 PVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGGGYELCVPTDTLTILDVVNTVA 67 Query: 84 ESFFVAEC---FASHKIDCPL 101 + +C SH CPL Sbjct: 68 PVERIRKCPLGLKSHTDLCPL 88 >gi|94313237|ref|YP_586446.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357089|gb|ABF11177.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus metallidurans CH34] Length = 191 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 11/131 (8%) Query: 8 DYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +YG+ L+Y + S +AE I +L K+ L KA +V G RGG Sbjct: 9 EYGLHCLLYLSRSQASVETASVRDLAELQGIPADYLAKLFTKLAKANLVVATEGIRGGFS 68 Query: 66 LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116 L RPAD+IT+ DVV A + + +C F G C + +V++ A Sbjct: 69 LARPADKITVHDVVVAIDGDKPLFDCLEIRDRCAVFDEAPPAWATRGVCSIHAVMQSAEK 128 Query: 117 AFFDVLTQYSI 127 A L Q+++ Sbjct: 129 AMRHELRQHTL 139 >gi|237740772|ref|ZP_04571253.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229422789|gb|EEO37836.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 138 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 21/139 (15%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + +RI ++IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQD--KDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKAL 115 +G GG +L + IT+ D V+ E+ + + C A SC SV+ KAL Sbjct: 59 KGANGGYKLNKDPKDITLRDAVETIEDEIIIKDRSCVAGQ-------TSC---SVIFKAL 108 Query: 116 ----NAFFDVLTQYSIECL 130 N F + L + + + L Sbjct: 109 ESVENNFLNNLDKVNFKEL 127 >gi|218508224|ref|ZP_03506102.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] gi|327194314|gb|EGE61175.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 148 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNR 134 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPR 138 >gi|213693040|ref|YP_002323626.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524501|gb|ACJ53248.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459218|dbj|BAJ69839.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 141 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P+ I +AE C + + K+++PL AG++ T G GG L RPA +IT+ V +AT Sbjct: 23 PSHI--LAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARPAAEITLRAVAEATG 80 Query: 84 ESFFVAECFASH-KIDCPLVGSCG 106 +F A + DC + S G Sbjct: 81 TTFVEANWTPGDVQEDCLVSSSMG 104 >gi|239834406|ref|ZP_04682734.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] gi|239822469|gb|EEQ94038.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] Length = 232 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 84 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 143 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L RPA++I I ++++A + + C Sbjct: 144 GGFCLARPANEIAIGNIIRALDGALAPIAC 173 >gi|119961490|ref|YP_946631.1| transcriptional regulator [Arthrobacter aurescens TC1] gi|119948349|gb|ABM07260.1| putative transcriptional regulator [Arthrobacter aurescens TC1] Length = 156 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R +M A + +Q +A+A + K + L G ++ RG Sbjct: 1 MKINAFADVSLRAIMVLAAAPEGTLLTTQAVADAVGTPYNHVSKAMVRLRALGFIDVERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL + T+ ++++ + AEC + K CPL+ CGL + KA AF+ Sbjct: 61 RLGGSRLNEAGRKATVGELLRHLDSRQDPAECQSPTKA-CPLINECGLRHAMNKAREAFY 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L I L R I Sbjct: 120 RELDTVVISSLPHARQMI 137 >gi|317488646|ref|ZP_07947188.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|316912252|gb|EFV33819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] Length = 147 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + Y +R LM C +++ +++E IS +L ++ +PLV+AG++ +VRG+ Sbjct: 6 VSTKGRYALR-LMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGK 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105 GG L + I DV++A E S C + CP G C Sbjct: 65 GGGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGEC 110 >gi|163814492|ref|ZP_02205881.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759] gi|158450127|gb|EDP27122.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759] Length = 136 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 5/108 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + +Y +RV+ AI++D P + +I + +S+ +L I++ L KA ++E Sbjct: 1 MVISSKGEYALRVMADLAINHDGRFIP--LKEIVQKEELSQKYLESIMRMLSKANLIEAA 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 G GG RL + ++ T+ ++++ TE C + I C C Sbjct: 59 SGHGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSTITCDRSKQC 106 >gi|320334527|ref|YP_004171238.1| BadM/Rrf2 family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755816|gb|ADV67573.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus maricopensis DSM 21211] Length = 155 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ Y + L Y + P+R +I+E ++ +L +IL L G+V++ Sbjct: 1 MRLSTTDVYAFQALAYLGMQG--PDRWIASEEISEQTGVARPYLVRILAALAAKGVVKSK 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC-GLTSVLRKAL 115 +G GG L R +++ +VV+A + C + + + CP C ++ + Sbjct: 59 KGIGGGYALARKPHLVSLCEVVRAIDGPVAPLSCISLNWREPCPEQDRCHARNTIYTRMR 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 +A VL +S+ LV++R++ Sbjct: 119 DAMLTVLQDFSVADLVQDRTA 139 >gi|282898861|ref|ZP_06306848.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] gi|281196388|gb|EFA71298.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] Length = 186 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA I +L K+ + AG+V ++RG Sbjct: 40 MKLTTRGHYSVKALLDLSLQPKYGPASVKAIASRQEIPAAYLEKLFIEMRHAGLVHSLRG 99 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG +L R QI+I ++++A E+ Sbjct: 100 SIGGYKLARHPQQISIGEILEAVGEN 125 >gi|89897247|ref|YP_520734.1| hypothetical protein DSY4501 [Desulfitobacterium hafniense Y51] gi|219666882|ref|YP_002457317.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|89336695|dbj|BAE86290.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537142|gb|ACL18881.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 126 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ TDY + +++ A + + ++AE +S +L KIL LVK G++ + G Sbjct: 1 MKYSRATDYALHTILFLARNGSEKKLGVQELAEKQNVSPTYLSKILNKLVKEGMIHSSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 GG L ++I+ D+++A E + +C + +C + Sbjct: 61 VNGGYSLGPHWEKISFFDIIQAIEGKTSLFDCCLNSNPECSI 102 >gi|262068100|ref|ZP_06027712.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] gi|291378186|gb|EFE85704.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] Length = 141 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + +RI ++IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQD--KDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE 90 +G GG +L + IT+ D V+ E+ + + Sbjct: 59 KGANGGYKLNKDPKDITLRDAVETIEDEIIIKD 91 >gi|56963349|ref|YP_175080.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909592|dbj|BAD64119.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 139 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IA+ +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + A+ IT D+++ E Sbjct: 61 AYGGYMLAKDAEDITAGDIIRVLE 84 >gi|19704551|ref|NP_604113.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328430|ref|ZP_06870956.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714837|gb|AAL95412.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154504|gb|EFG95296.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 143 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L +I + + + ++ V +C K CG T + K N Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCSEEGCGDTCIWSKLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +L++ S++ + N I++ Sbjct: 121 AMTKILSETSLQDFINNGKRIQE 143 >gi|299535694|ref|ZP_07049015.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728894|gb|EFI69448.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 139 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L P +I+ V+ E Sbjct: 61 AYGGYMLANPPSEISAAHVISVLE 84 >gi|225374493|ref|ZP_03751714.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM 16841] gi|225213731|gb|EEG96085.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM 16841] Length = 139 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L A+ + + + + I E + + F +KI+ L K G+V++VRG Sbjct: 1 MIITRETDYALRILR--ALSDGHRHTMKNICEEAVVPQQFAYKIIAKLAKGGVVDSVRGS 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 GG L ++++ +++ + + C AS + +C C +R+ L Sbjct: 59 GGGCLLDCDLRELSLYRLLEIMGDDDRINACMAS-EYECSWEKKCRKHCEIRRKL 112 >gi|85709850|ref|ZP_01040915.1| predicted transcriptional regulator [Erythrobacter sp. NAP1] gi|85688560|gb|EAQ28564.1| predicted transcriptional regulator [Erythrobacter sp. NAP1] Length = 144 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + + A H D +++A + + +++ L AG++ +VRG Sbjct: 1 MRLSNLADYAVITMCQAATHCGDGRVSAAELASETGLPVPTVQRLVSKLTSAGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG++L RPA IT+ D+V+A E + C HK Sbjct: 61 AGGGLQLGRPAAAITVADIVEAVEGPIALTACV-DHK 96 >gi|256372224|ref|YP_003110048.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256008808|gb|ACU54375.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium ferrooxidans DSM 10331] Length = 273 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L++R DY +R +Y A ++ + +I A I F +IL L +AGI+ G Sbjct: 3 LSLSRRGDYAVRAALYLARQESNEAVGVREITAAMAIPPSFAGQILADLTRAGILGARPG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L IT+L +V+A E + C A C C L + + A+ A Sbjct: 63 RGGGYWLQHDPKDITLLTIVEAAEGTLRAERC-ALGDGPCRWDSVCPLHTFWQGAVRAVR 121 Query: 120 DVLTQYSI 127 D L ++ Sbjct: 122 DQLATVTL 129 >gi|70725313|ref|YP_252227.1| hypothetical protein SH0312 [Staphylococcus haemolyticus JCSC1435] gi|68446037|dbj|BAE03621.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 160 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +++ +S+ +L KI++ LVK G+V + G+ GG L +P +QIT DV A E Sbjct: 31 LSDRLNVSDSYLKKIIKALVKEGLVNSSTGKNGGFSLNKPLNQITFYDVFLAIEGR---D 87 Query: 90 ECFASHKIDCPLVG 103 F+S ++ P +G Sbjct: 88 AIFSSQQLLKPFLG 101 >gi|323494810|ref|ZP_08099908.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546] gi|323310950|gb|EGA64116.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546] Length = 158 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL Sbjct: 1 MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGED 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A I I V+ A +ES +C + K DC C ++ R + D L ++ Sbjct: 61 AYSIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGE 118 Query: 130 LVRN 133 L+++ Sbjct: 119 LMKD 122 >gi|271970217|ref|YP_003344413.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513392|gb|ACZ91670.1| putative transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 157 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 34/52 (65%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +L K L+ LV+AG++ G RGG RL RPA +IT+L +V+A + + EC Sbjct: 41 YLTKQLKSLVRAGLLAATTGPRGGFRLARPASEITLLQIVEAVDGTSPPYEC 92 >gi|154483669|ref|ZP_02026117.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC 27560] gi|149735579|gb|EDM51465.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC 27560] Length = 147 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+L+K++ YG+ L+ +IH+ + + IAE IS +L I L +AGI+++++G Sbjct: 1 MNLSKKSRYGLTALIDLSIHSTKGHVSLISIAERNGISPQYLEHIFASLRRAGIIKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88 +GG L +IT+ +++A + ++ + Sbjct: 61 AQGGYLLGDSPSRITVASIIEALDGAYRI 89 >gi|182678359|ref|YP_001832505.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634242|gb|ACB95016.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 149 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A ++ IA A I + FL IL L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGRPLGEATLVTDIAVANEIPKKFLDTILGELRNAGFVNSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I + +V+ + +C + DC C + ++ +A NA Sbjct: 62 GGYTLARPAHEIMVGHIVRVLDGPLAPIQCASKTSYRRCDDCADEKKCTVRLLMLEARNA 121 Query: 118 FFDVLTQYSI 127 VL S+ Sbjct: 122 IAMVLDNRSL 131 >gi|150395381|ref|YP_001325848.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150026896|gb|ABR59013.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 168 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + +AE +S +L K LQ + AG++E V G +GG RL R ++IT+LD+V A E Sbjct: 29 AALAEFHGVSTSYLLKHLQAMSGAGLLEAVSGPKGGYRLARAPEKITLLDIVLAVE 84 >gi|291295308|ref|YP_003506706.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470267|gb|ADD27686.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM 1279] Length = 173 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+K Y ++L Y P+R+ ++++A + +L +IL LV +V + Sbjct: 1 MRLSKTDIYAFKILGYLGAQA--PDRLVGSEELSKATGVPHTYLARILAALVGHNLVLSK 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR-KAL 115 +G+ GG L RPA++I + DV++A + C + + C C SV+ K Sbjct: 59 KGQGGGYALPRPAEEINLRDVIRAVDGPIAPLACVSLNWPKACVEERRCHARSVVWLKVR 118 Query: 116 NAFFDVLTQYSIECLVRN 133 +A +L+Q S+ L + Sbjct: 119 DAALQILSQVSVADLAAD 136 >gi|218662716|ref|ZP_03518646.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli IE4771] Length = 128 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 37/56 (66%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + +AE +S +L K LQ L AGI++TV G RGG RL + ++I++LD++ A E Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYRLAKAPEEISLLDILLAVE 84 >gi|271970444|ref|YP_003344640.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513619|gb|ACZ91897.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 181 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ RT Y +R A P +IA + I FL IL L +AG++ + RG Sbjct: 1 MRISARTQYALRAATELAAAPPGPVPAEKIAVSQNIPRRFLDNILLQLRRAGLIHSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++IT+ DV+ E + ++ + PL + S+LR+ Sbjct: 61 DGGYWLARPAEEITLADVIMVVEGNPEHSQHGGYPGVAGPL---ADVWSLLREHEETLLT 117 Query: 121 VLT 123 +T Sbjct: 118 EIT 120 >gi|257784030|ref|YP_003179247.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] gi|257472537|gb|ACV50656.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] Length = 167 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 8 DYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +Y + L+Y N+ + R+ AE ISE +L K L KAGIV + G +GG RL Sbjct: 8 EYALHCLLYMVDLNENKSIRVRDFAEFQGISESYLSKTFTQLSKAGIVLSSPGIKGGYRL 67 Query: 67 CRPADQITILDVVKATE 83 + I+ D+V+A E Sbjct: 68 AKSPQSISFWDIVEAIE 84 >gi|56421100|ref|YP_148418.1| hypothetical protein GK2565 [Geobacillus kaustophilus HTA426] gi|261418418|ref|YP_003252100.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC61] gi|297529270|ref|YP_003670545.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. C56-T3] gi|319767622|ref|YP_004133123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC52] gi|56380942|dbj|BAD76850.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374875|gb|ACX77618.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC61] gi|297252522|gb|ADI25968.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. C56-T3] gi|317112488|gb|ADU94980.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC52] Length = 138 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L +IT D+++ E Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLE 84 >gi|15605808|ref|NP_213185.1| hypothetical protein aq_268 [Aquifex aeolicus VF5] gi|2982976|gb|AAC06590.1| hypothetical protein aq_268 [Aquifex aeolicus VF5] Length = 156 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 39/67 (58%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++ +IA+ I FL K++ L K G+V +V+G RGG L + D+ITI D+++ ++ Sbjct: 38 KVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDIIELFGDA 97 Query: 86 FFVAECF 92 + C Sbjct: 98 YKYEMCL 104 >gi|261252066|ref|ZP_05944639.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891] gi|260935457|gb|EEX91446.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891] Length = 155 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAYS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I I V+ A +ES +C + K DC C ++ R + D L ++ L++ Sbjct: 61 IAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGELMK 118 Query: 133 N 133 + Sbjct: 119 D 119 >gi|271963708|ref|YP_003337904.1| hypothetical protein Sros_2178 [Streptosporangium roseum DSM 43021] gi|270506883|gb|ACZ85161.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 149 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A + P + ++A+ + +L IL + +AG+V RG Sbjct: 1 MRLSARVDYALRAAAELAAAGEGPTTVGELAKEQDMPPKYLENILLQMRRAGLVRGQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L RPA +IT+ DV++A + Sbjct: 61 EGGYVLARPAAEITLADVIRAVD 83 >gi|229016279|ref|ZP_04173227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] gi|229022516|ref|ZP_04179048.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228738769|gb|EEL89233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228745050|gb|EEL95104.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] Length = 168 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KA IV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|229028761|ref|ZP_04184868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|228732543|gb|EEL83418.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] Length = 168 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KA IV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|83312129|ref|YP_422393.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946970|dbj|BAE51834.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 157 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A H++ P ++ IAE IS +L ++ L K G+V++VRG Sbjct: 1 MKLSTKGRYAVMAMVDLASHSEGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L R Q I D++ A +E C C Sbjct: 61 PGGGYLLSRIPQQTRISDIILAVDEPIQTTRCSPGSPAGC 100 >gi|228984158|ref|ZP_04144343.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775595|gb|EEM23976.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 168 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KA IV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|330467835|ref|YP_004405578.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810806|gb|AEB44978.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora maris AB-18-032] Length = 151 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R+DY +R ++ A + + + +A + I FL IL L +AG++ + RG Sbjct: 1 MYVSARSDYAVRAMLAMAQQHPALVKAAALAASQDIPYSFLQGILLDLRRAGLLHSARGS 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFV-----AECFASHKIDCPLVGSCGLTSVLRKAL 115 GG L R ++IT+ DV++AT AE H + + GL V + Sbjct: 61 DGGYALTRAPEEITVGDVLRATGGPLTTVRGAPAEVATYHGV------AVGLGEVWQSVH 114 Query: 116 NAFFDVLTQYSIECLV 131 A V+ + S+ L+ Sbjct: 115 RAIERVVDRSSLADLL 130 >gi|115372474|ref|ZP_01459782.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1] gi|115370436|gb|EAU69363.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1] Length = 158 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++K TDYG+ +L A ++AE + + K+L+ L AG++ + RG G Sbjct: 4 MSKMTDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAMG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G L RPA I + V+ A E + C H P SC L SV R + + V+ Sbjct: 64 GYGLARPAAAIPLTQVISALEGPVAITACV-QHTDGEP---SCELESVCR--IRGHWRVI 117 Query: 123 TQYSIECLVR 132 Q E L R Sbjct: 118 NQAIQEALGR 127 >gi|323486700|ref|ZP_08092021.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323692161|ref|ZP_08106404.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323400081|gb|EGA92458.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323503735|gb|EGB19554.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 145 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ A+ D RI I+ ISE +L +I+ L KAG V +VRG Sbjct: 1 MKVSTKGRYALRMMLDLALQGDEVVRIKDISLRQEISEKYLEQIVSVLKKAGYVNSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--------CPLVGSCGLTSVLR 112 +GG L + T+ +++ TE S C + ++D P + L +++ Sbjct: 61 QGGYCLAGKPQEYTVGMILRLTEGSMAPVACVDT-RMDGRGNTCSRAPGCTALKLWTMVD 119 Query: 113 KALNAFFDVLT 123 A+N D +T Sbjct: 120 DAVNGVIDKVT 130 >gi|256026414|ref|ZP_05440248.1| hypothetical protein PrD11_00165 [Fusobacterium sp. D11] gi|260494511|ref|ZP_05814641.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33] gi|289764429|ref|ZP_06523807.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|260197673|gb|EEW95190.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33] gi|289715984|gb|EFD79996.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 140 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y +H D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 60 GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDEL 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 120 LDDFDKINFYDLVENNTGLE 139 >gi|15613822|ref|NP_242125.1| hypothetical protein BH1259 [Bacillus halodurans C-125] gi|10173875|dbj|BAB04978.1| BH1259 [Bacillus halodurans C-125] Length = 139 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IA+ +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPISLKSIAKEHDLSEHYLEQLIAPLRNAMLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + A +IT D+++ E Sbjct: 61 AYGGYMLAKEASEITAGDIIRVLE 84 >gi|329297589|ref|ZP_08254925.1| DNA-binding transcriptional regulator IscR [Plautia stali symbiont] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H ++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 GG L + A I + V+ A +ES +C K C C LT VL + L+ Sbjct: 61 PGGGYLLGKDAGAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117 Query: 117 AFFDVLTQYSIECLVRNR 134 ++F L ++ LV N+ Sbjct: 118 SYF--LNNITLAELVNNQ 133 >gi|299822833|ref|ZP_07054719.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816362|gb|EFI83600.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 188 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 13/125 (10%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + I+E IS+ +L K+++ LV AG+V + G+ GG L + A+ T+LD+ +A E Sbjct: 56 PLKSYTISERLGISDSYLKKVMRQLVVAGLVTSEAGKDGGFILAKKAEDFTMLDIYEAIE 115 Query: 84 --ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-------LTQYSIECLVRNR 134 ESF + A+ + + + LN FF+ L QY L+ N Sbjct: 116 GKESFIHSTNLAAKVFLYEDIIEAKESEI----LNVFFEAEELFKIRLGQYKFSQLLMNT 171 Query: 135 SSIKK 139 I K Sbjct: 172 EQINK 176 >gi|239616862|ref|YP_002940184.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] gi|239505693|gb|ACR79180.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] Length = 144 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + K Y +R+L+ +I N N +I+ + + F KIL L KAG+V +RGR Sbjct: 1 MLIQKTVRYALRILVKLSIENRALNS-KEISLSENLDHGFTLKILYYLKKAGLVRAIRGR 59 Query: 61 RGGVRLCRPADQITILDVVKA 81 +GG L + + ITI + +A Sbjct: 60 KGGYALAKNPEDITITKIFEA 80 >gi|126734658|ref|ZP_01750404.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] gi|126715213|gb|EBA12078.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] Length = 125 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 6/107 (5%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ D P IA+ + + KI+ L +AGI + G +GG L R +QIT+LD Sbjct: 2 AVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRAGITTSQPGAKGGTHLARSPEQITLLD 61 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 V +A + E FA+ +CP SC + S + L+ TQ Sbjct: 62 VYRAVDTQ----EIFANP--NCPPDASCPIGSRIGPVLDEIKANATQ 102 >gi|226227389|ref|YP_002761495.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27] gi|226090580|dbj|BAH39025.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27] Length = 163 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 13/146 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH-----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M +T +YG + CA+H P +A + ++ +IL + +AGIV Sbjct: 1 MRITTWAEYG----LICALHLARRGETGPVTGRDVATRERLPGDYVEQILLRMRRAGIVN 56 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLR 112 + RG RGG L R +I++ DV++A+E + F C SH +D C +C + V Sbjct: 57 STRGARGGYMLARKPSEISVRDVIQASELTTFDLHCV-SHPVDAGRCSESENCSIRPVWM 115 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIK 138 +VL + L+ + S ++ Sbjct: 116 LLQQRIDEVLEGVKLSDLLADESVVR 141 >gi|310777893|ref|YP_003966226.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] gi|309747216|gb|ADO81878.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Query: 8 DYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +YG+ L+Y D+P + +++ ISE +L K+ L K+GIV + G +GG Sbjct: 9 EYGLHCLLYLV---DHPEGKAISVKELSTFQGISETYLSKVFTKLKKSGIVRSTPGVKGG 65 Query: 64 VRLCRPADQITILDVVKATEESFFVAEC 91 L R + I+ DV++A E + + +C Sbjct: 66 YELARDSKDISFWDVIEAIEGNSNLFQC 93 >gi|228932374|ref|ZP_04095256.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827310|gb|EEM73062.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 168 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KA IV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|228968749|ref|ZP_04129715.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790927|gb|EEM38562.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] Length = 168 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ ++C ++ + P++ I +AE +SE FL K+ L KA IV +V G +GG Sbjct: 6 GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91 RL + + I+ DV++A E + +C Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92 >gi|91205764|ref|YP_538119.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii RML369-C] gi|91069308|gb|ABE05030.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii RML369-C] Length = 139 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 11/131 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + D P +++I+ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCGLTSVLR 112 GG L ++I I +++ A E+F + C+ AS+ I C S L L Sbjct: 61 PNGGYILIGKLEEIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKC---NSHKLWKGLG 117 Query: 113 KALNAFFDVLT 123 K + +F+ ++ Sbjct: 118 KHIRDYFENIS 128 >gi|227431453|ref|ZP_03913502.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352819|gb|EEJ42996.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 150 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + ++E +SE +L K ++ LV A +++ + Sbjct: 1 MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLGVSESYLKKTMRKLVVANLIKAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFV 88 + GG +L R + IT+LDV +A E E F+ Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIEGEDSFI 90 >gi|152990511|ref|YP_001356233.1| transcriptional regulator [Nitratiruptor sp. SB155-2] gi|151422372|dbj|BAF69876.1| transcriptional regulator [Nitratiruptor sp. SB155-2] Length = 138 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 43/70 (61%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 ++Y + + P + IA+ I + FL +IL L K+GIV+++RG +GG L +P +I Sbjct: 17 VLYEHYNENKPLKTELIAKLGSIPKNFLEQILLDLKKSGIVKSIRGAKGGYILAKPPKEI 76 Query: 74 TILDVVKATE 83 ++D++ + E Sbjct: 77 LLIDIINSVE 86 >gi|238060186|ref|ZP_04604895.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881997|gb|EEP70825.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 170 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 1 MHLTKRTDYGIRV-------LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R P QIA+A I FL IL L + GI Sbjct: 15 MRLSARVDYALRATAELAAVADDAGAARSRPVTAEQIAKAQGIPPKFLESILLQLRRGGI 74 Query: 54 VETVRGRRGGVRLCRPADQITILDVVK 80 V RG GG L RPA +I++ +V++ Sbjct: 75 VHAQRGPEGGYWLARPAAEISLAEVIR 101 >gi|210610732|ref|ZP_03288592.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787] gi|210152296|gb|EEA83303.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787] Length = 158 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR++ Y A + S++A I E ++ KI + L +A I+ G Sbjct: 19 MQLKITTDYAIRIVYYLACRGEVITA-SELAYELKIPESYIPKITKKLKEANIITACEGI 77 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 +GG L + + I++ D++ +TE + + C Sbjct: 78 KGGYSLVKKTEDISLFDIISSTEVTMKLNRCL 109 >gi|20140436|sp|O66625|Y268_AQUAE RecName: Full=Putative HTH-type transcriptional regulator aq_268 Length = 144 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 39/67 (58%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++ +IA+ I FL K++ L K G+V +V+G RGG L + D+ITI D+++ ++ Sbjct: 26 KVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDIIELFGDA 85 Query: 86 FFVAECF 92 + C Sbjct: 86 YKYEMCL 92 >gi|190890831|ref|YP_001977373.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190696110|gb|ACE90195.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 148 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSI 127 VL +I Sbjct: 122 TRKVLFSTTI 131 >gi|73540759|ref|YP_295279.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118172|gb|AAZ60435.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha JMP134] Length = 186 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A+ +T+ D++ A +E +C K +C G +T L LN Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGG--KGNCNGDDGSGRCMTHELWATLNQ 118 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 119 KMVEYLDSVSLKNLV 133 >gi|291545181|emb|CBL18290.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. 18P13] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R++ A H D Y N I IA+ ISE +L +I+ L + G V + R Sbjct: 24 MKISTKGRYALRLMYELACHADEGYLN-IRAIAQRQQISEKYLEQIIAMLSRGGCVISSR 82 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG RL +P + T+ +++ TE C C C V NA Sbjct: 83 GAQGGYRLAKPPEAYTVGMILRLTEGCLAPVPCMQEGCAPCERAECCPTQFVWEALDNAI 142 Query: 119 FDVLTQYSIECLV 131 V+ + ++ +V Sbjct: 143 SGVIDRITLADIV 155 >gi|225568454|ref|ZP_03777479.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM 15053] gi|225162682|gb|EEG75301.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM 15053] Length = 146 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A ++ + ++ IA+ +S +L ++ L KAGIV +V+G Sbjct: 1 MKISTKGRYGLRALVDMAANSGEEAVSLTLIAKRQNLSLNYLEQVFGILRKAGIVASVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG RL + A IT+ ++++A E F +A D Sbjct: 61 AGGGYRLAKDAAGITVKEILEALEGEFSIAGTAKGETEDA 100 >gi|289706858|ref|ZP_06503199.1| Rrf2 family protein (putative transcriptional regulator) [Micrococcus luteus SK58] gi|289556408|gb|EFD49758.1| Rrf2 family protein (putative transcriptional regulator) [Micrococcus luteus SK58] Length = 152 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD +RVLM A QIA+ + + K + L + G +E +RGR Sbjct: 1 MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + ++V++ V +C + CP G C L L +A AF Sbjct: 61 HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL 120 Query: 120 DVLTQYSIECLV 131 L I LV Sbjct: 121 AELDTVRIRDLV 132 >gi|255523578|ref|ZP_05390546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296186461|ref|ZP_06854864.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] gi|255512835|gb|EET89107.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296048908|gb|EFG88339.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] Length = 167 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y I L+Y + + I +A ISE +L K+ L K+GI++++ G Sbjct: 1 MKFSVGVEYAIHCLLYMVNSEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87 +GG L R A+ IT ++V+A E E FF Sbjct: 61 VKGGYALARNAEDITFWNIVEAVEGSEPFF 90 >gi|300772784|ref|ZP_07082654.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761087|gb|EFK57913.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 145 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 7/106 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R +MY A + + I +IAEA E FL KILQ L K G++ + +G Sbjct: 4 FSKTCEYALRAVMYIAQCSQQGEKAGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCPL 101 GG + + + D+V++ + S C + S + CPL Sbjct: 64 NGGFYMDPEDTKRPLADIVRSIDGSQLFEGCAMGLDYCSKENPCPL 109 >gi|237744648|ref|ZP_04575129.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229431877|gb|EEO42089.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 140 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y +H D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 60 GAKGGYILTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDEL 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 120 LDDFDKINFYDLVENNTGLE 139 >gi|312796716|ref|YP_004029638.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454] gi|312168491|emb|CBW75494.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454] Length = 180 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 5 MRLTTKGRFAVTAMIDLALRQEKGPVTLAAISQRQQISLSYLEQLFGKLRRHEIVESVRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R AD++T+ D++ A +E +C Sbjct: 65 PGGGYNLARRADEVTVADIIIAVDEPLDATQC 96 >gi|229815527|ref|ZP_04445856.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM 13280] gi|229808918|gb|EEP44691.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM 13280] Length = 163 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 16/106 (15%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + ++AE IS +L ++++PL+ AG++ +VRG+ GG L +PA ++ D+++A E Sbjct: 49 LREVAEREGISLKYLEQLVRPLMNAGLLRSVRGKGGGYVLAKPAAEVRAGDILRAAEGER 108 Query: 87 FVAECFASHKIDCPLVGSCGLTSV---------LRKALNAFFDVLT 123 C L G+CG + + L + ++A+ D +T Sbjct: 109 STVACEG-------LDGACGRSDLCSTVKFWTGLEETIDAYVDGVT 147 >gi|332283993|ref|YP_004415904.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7] gi|330427946|gb|AEC19280.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7] Length = 171 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ IA+ IS +L ++ L + +V+++RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQHSGPVTLAAIAQRQNISLSYLEQLFGKLRRHKLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN- 116 GG L R A IT+ D++ A +E C + GS G +T L LN Sbjct: 61 PGGGYSLARLARNITVADIIFAVDEPLDATSCGGKENCNVGRNGSTGKCMTHELWSNLNR 120 Query: 117 AFFDVLTQYSIECLV 131 D L S++ LV Sbjct: 121 KMVDYLDSVSLQDLV 135 >gi|159044182|ref|YP_001532976.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911942|gb|ABV93375.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 162 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 +S+IAE IS +L ++ L +A +VE+VRG GG RL R D I + DV++A +E+ Sbjct: 28 LSEIAERQSISLTYLEQLFVKLRRAKLVESVRGPGGGYRLARAPDAIRVSDVLQAVDET 86 >gi|332188678|ref|ZP_08390393.1| rrf2 family protein [Sphingomonas sp. S17] gi|332011295|gb|EGI53385.1| rrf2 family protein [Sphingomonas sp. S17] Length = 143 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT+R+ Y +R +++ A P +++IA + FL IL L A ++++ RG+ Sbjct: 2 LTQRSRYALRAMLFLAEMPPAGPPTSMTRIATEANVPRKFLELILADLKGAQLLDSQRGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93 GG RL R A I++ D+++ E + C + Sbjct: 62 MGGYRLARAAHLISLGDIIRTIEGPLALVPCVS 94 >gi|327405892|ref|YP_004346730.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321400|gb|AEA45892.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis DSM 16823] Length = 151 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + KR+ Y I+ L A ++ D + I+ IAE I FL IL L G+V + G Sbjct: 2 IPKRSKYAIQALKCLAKVYRDKKHLSIATIAEEENIPRKFLEAILLQLRNGGMVGSKMGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116 GG L + D+I + +++ T + C F I+CP CGL V+ + Sbjct: 62 NGGYFLVKHPDEIVLSSIIRVTGGPIALLPCVSLNFYEECIECPHEELCGLHDVMLEVRE 121 Query: 117 AFFDVLTQYSI-ECLVRNRSSIKK 139 A +L++ S+ + ++R + ++K Sbjct: 122 ASIHILSKTSLADLILREKKLMRK 145 >gi|238921054|ref|YP_002934569.1| iron-sulfur cluster assembly transcription factor IscR, [Edwardsiella ictaluri 93-146] gi|259493874|sp|C5BEU6|ISCR_EDWI9 RecName: Full=HTH-type transcriptional regulator iscR gi|238870623|gb|ACR70334.1| iron-sulfur cluster assembly transcription factor IscR, putative [Edwardsiella ictaluri 93-146] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +I I V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKETSEIAIGAVITAVDESVDATRCQG--KEGCQGGTRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNR 134 L S+ LV N+ Sbjct: 119 GFLNNISLAELVNNQ 133 >gi|241203623|ref|YP_002974719.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857513|gb|ACS55180.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 148 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L G+V + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPLAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I + + S Sbjct: 122 TRKVLFSTTIADAIAPKHS 140 >gi|166033539|ref|ZP_02236368.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC 27755] gi|166026724|gb|EDR45481.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC 27755] Length = 145 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A HN R+ I++ I+ ++ +I+ L K+G V++ RG Sbjct: 1 MKVSTKGRYALRIMIDLAEHNTGGYIRLKDISKRQGITLKYMEQIMPILTKSGYVKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++ T ++++A E S C C C K + Sbjct: 61 NNGGYMLAKKPEEYTAGEILRAAEGSLAPVSCIEDEPNACGHYEQCRTV----KFWEGLW 116 Query: 120 DVLTQYS 126 DV+ +Y+ Sbjct: 117 DVIIEYT 123 >gi|209547809|ref|YP_002279726.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533565|gb|ACI53500.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 166 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 37/56 (66%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + +AE +S +L K LQ L AGI++TV G RGG RL + ++I++LD++ A E Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYRLAKAPEEISLLDILLAVE 84 >gi|84387613|ref|ZP_00990630.1| Predicted transcriptional regulator [Vibrio splendidus 12B01] gi|84377458|gb|EAP94324.1| Predicted transcriptional regulator [Vibrio splendidus 12B01] Length = 160 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I + V+ A +ES +C + DC C LT L + L++ Sbjct: 61 IAVGTVIAAVDESVDATKCHG--RADCQGGSRC-LTHTLWRDLSS 102 >gi|220928362|ref|YP_002505271.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium cellulolyticum H10] gi|219998690|gb|ACL75291.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulolyticum H10] Length = 148 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + YGI ++ A + D+ IS I+E IS+++L ++ L ++ +V +V Sbjct: 1 MRISSKGRYGIAAMICVAQLGRNGDFVTVIS-ISEKLGISKIYLEQVFSLLKRSKLVNSV 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFF 87 +G +GG L + +++IT D+++A E S F Sbjct: 60 KGSQGGYHLAKSSERITAYDILQAVELSLF 89 >gi|223932766|ref|ZP_03624764.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis 89/1591] gi|330832047|ref|YP_004400872.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3] gi|223898599|gb|EEF64962.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis 89/1591] gi|329306270|gb|AEB80686.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis ST3] Length = 139 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + S IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG RL + DQIT+L V +A E + FA H+ P Sbjct: 61 V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNP 100 >gi|289208014|ref|YP_003460080.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thioalkalivibrio sp. K90mix] gi|288943645|gb|ADC71344.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. K90mix] Length = 164 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++++A +S +L ++ L + G+V + RG Sbjct: 1 MKLTTKGRYAVTAMLDVAMHTENSPVSLAEVARRQKLSLSYLEQLFSRLRRQGLVNSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + I++ D++ A +E V C K +C C + + Sbjct: 61 PGGGYALSREPEGISVADIIVAVDEPVDVTRCGG--KANCNSESRCLTHDLWTDLSQQLY 118 Query: 120 DVLTQYSI-ECLVRNRSSIKK 139 D L+ ++ + L R+++ + + Sbjct: 119 DFLSSRTLADVLERHQAQMAQ 139 >gi|224543708|ref|ZP_03684247.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM 15897] gi|224523361|gb|EEF92466.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM 15897] Length = 143 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H+ + +IA ISE +L I++ L K VE +RG Sbjct: 1 MMISTKGRYALRVMIDLAQHDRSKYIPLKEIAARQDISEKYLEIIIKSLSKKHFVEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + ++ ++K TE + C A C C + Sbjct: 61 KGGGYRLTHAPEDYSVASILKVTEGTLAPVSCLADECNTCERASYCNTLPMWTGLHKVIT 120 Query: 120 DVLTQYSIECLVRNRSS 136 D L S+ LV S+ Sbjct: 121 DYLEGVSLSDLVPASSN 137 >gi|221639874|ref|YP_002526136.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160655|gb|ACM01635.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] Length = 155 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L+ A+ N + +AE IS +L ++ L +AG+VE V Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L R A+ I + ++++A EE+ A + LT+ L + L+A Sbjct: 61 RGPGGGYKLARAAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120 Query: 118 FFDV-LTQYSIECLVRN 133 V L Q + +++N Sbjct: 121 HVYVFLHQTRLSDIIKN 137 >gi|168705374|ref|ZP_02737651.1| possible transcriptional regulator, Rrf2 family protein [Gemmata obscuriglobus UQM 2246] Length = 140 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 10/108 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + + + + +IL L +AG+V T G GG RL +PA +IT+ V +A E Sbjct: 29 IAGSVNTNPVVIRRILAVLARAGLVATQEGTGGGGRLAKPAAEITLRAVYEAVEPDAL-- 86 Query: 90 ECFASHKID----CPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLV 131 FA H D CP+ G L LR A A L S+ LV Sbjct: 87 --FALHPRDPNPLCPVGGGIQSALEPTLRAAETALLGSLAGTSVADLV 132 >gi|113867177|ref|YP_725666.1| transcriptional regulator of iron sulfur clusterassembly (IscR) [Ralstonia eutropha H16] gi|113525953|emb|CAJ92298.1| transcriptional regulator of iron sulfur clusterassembly (IscR) [Ralstonia eutropha H16] Length = 184 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A+ +T+ D++ A +E +C K +C G +T L LN Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGG--KGNCNGDDGSGRCMTHELWATLNQ 118 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 119 KMVEYLDSVSLKNLV 133 >gi|86145582|ref|ZP_01063912.1| Predicted transcriptional regulator [Vibrio sp. MED222] gi|85836553|gb|EAQ54679.1| Predicted transcriptional regulator [Vibrio sp. MED222] Length = 160 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I + V+ A +ES +C + DC C LT L + L++ Sbjct: 61 IAVGTVIAAVDESVDATKCHG--RADCQGGSRC-LTHTLWRDLSS 102 >gi|56696277|ref|YP_166634.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56678014|gb|AAV94680.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 164 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 5 KRTDYGIRVLMYCA-IHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +R G+ ++CA + + P +A +SE +L K ++ L AG+ E V G Sbjct: 2 RRLGDGVEAALHCAAVLAELPEGKVLSGRDLAALHGVSESYLLKHMRALTAAGVTEAVPG 61 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 RGG RL R Q+++LDVV+A + Sbjct: 62 PRGGFRLARAPRQVSLLDVVEAVD 85 >gi|23466176|ref|NP_696779.1| hypothetical protein BL1627 [Bifidobacterium longum NCC2705] gi|227546522|ref|ZP_03976571.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621519|ref|ZP_04664550.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133920|ref|YP_004001259.1| transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317482172|ref|ZP_07941195.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA] gi|322689884|ref|YP_004209618.1| transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691825|ref|YP_004221395.1| transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326915|gb|AAN25415.1| hypothetical protein in upf0074 [Bifidobacterium longum NCC2705] gi|227213071|gb|EEI80950.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515394|gb|EEQ55261.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516431|emb|CBK70047.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. longum F8] gi|311773214|gb|ADQ02702.1| Putative transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916406|gb|EFV37805.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA] gi|320456681|dbj|BAJ67303.1| putative transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461220|dbj|BAJ71840.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] Length = 140 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P++I +AE C + + K+++PL AG++ T G GG L RPA +IT+ V +AT Sbjct: 23 PSQI--LAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARPAAEITLRAVAEATG 80 Query: 84 ESF 86 +F Sbjct: 81 TTF 83 >gi|320159837|ref|YP_004173061.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] gi|319993690|dbj|BAJ62461.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] Length = 146 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++R DYG+++++ A + P + +AE I FL +I + L+++G + G R Sbjct: 4 VSRRIDYGVQLMIALAQTEAERPVPTAVLAEKLHIPLPFLHQIGRSLIQSGYIRATPGPR 63 Query: 62 GGVRLCRPADQITILDVVKATE 83 GG+RL + + I++L +++A E Sbjct: 64 GGLRLKQSPENISLLQIIEALE 85 >gi|319935067|ref|ZP_08009510.1| iron-sulfur cluster assembly transcription factor IscR [Coprobacillus sp. 29_1] gi|319810085|gb|EFW06454.1| iron-sulfur cluster assembly transcription factor IscR [Coprobacillus sp. 29_1] Length = 143 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H+ + + +IA+ ISE +L I++ LV+A V+ +RG Sbjct: 1 MMISTKGRYALRIMLDLAEHDCEVYLPLREIAQRQNISEKYLEIIIKILVQARFVQGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116 + GG RL R T+ ++K TE S C C L + + L + ++ Sbjct: 61 KGGGYRLVRDPHTYTVGSILKLTEGSLAPVACLECSPNTCERSQLCKTLPMWQKLDQMID 120 Query: 117 AFFDVLT 123 +F+ +T Sbjct: 121 EYFEGIT 127 >gi|212638580|ref|YP_002315100.1| putative transcriptional regulator YrzC [Anoxybacillus flavithermus WK1] gi|212560060|gb|ACJ33115.1| Putative transcriptional regulator YrzC [Anoxybacillus flavithermus WK1] Length = 150 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + YG+ +++ A + + P + IA+ +SE +L +++ PL AG+V++VRG Sbjct: 13 LKISTKGRYGLTIMIELAKRYGEGPISLKSIAQTNNLSEHYLEQLISPLRNAGLVKSVRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L +IT DV++ E V E + Sbjct: 73 AYGGYILADEPSKITAGDVIRVLEGPLQVVEELEDEE 109 >gi|116619016|ref|YP_819387.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097863|gb|ABJ63014.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 150 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + ++E +SE +L K ++ LV A +++ + Sbjct: 1 MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLEVSESYLKKTMRKLVVANLIKAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 + GG +L R + IT+LDV +A E Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIE 84 >gi|54022226|ref|YP_116468.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54013734|dbj|BAD55104.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 176 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 25/108 (23%) Query: 1 MHLTKRTDYGIRVLMYCA-------------------IHNDY----PNRI--SQIAEACC 35 MH+T + DY +R L+ A + D P ++ IA A Sbjct: 1 MHITAKVDYAVRTLLEIARLTPAEITPATAGCVAEPGVRPDAGVAAPAKVKAETIAAAQQ 60 Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 I L +L L +A +V + RG GG RL RPA QI++ DV++A E Sbjct: 61 IPPKVLETVLSDLRRAELVTSRRGPDGGYRLARPAAQISVADVIRAIE 108 >gi|13473798|ref|NP_105366.1| hypothetical protein mll4516 [Mesorhizobium loti MAFF303099] gi|14024549|dbj|BAB51152.1| mll4516 [Mesorhizobium loti MAFF303099] Length = 156 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 6/130 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ A + ++ IA I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLAHLPAGQLAFVNDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG RL R A++I + VV+ + C + + DC +C + ++ + A Sbjct: 62 GGYRLARSAEEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120 Query: 118 FFDVLTQYSI 127 +VL Q S+ Sbjct: 121 IAEVLDQRSL 130 >gi|319762538|ref|YP_004126475.1| transcriptional regulator, rrf2 family [Alicycliphilus denitrificans BC] gi|330824556|ref|YP_004387859.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117099|gb|ADU99587.1| transcriptional regulator, Rrf2 family [Alicycliphilus denitrificans BC] gi|329309928|gb|AEB84343.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus denitrificans K601] Length = 180 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R + + A+H + +P + I+ IS +L I L +AG+V +VRG Sbjct: 1 MRLTTRGKLAVTAITDVALHSHGHPVALPGISVRQGISLSYLEDIFSALRRAGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG L RP +++ ++V A+E+ A A + P Sbjct: 61 PGGGYMLTRPPQSLSVAEIVMASEKYMAHANDKAGNAAPSP 101 >gi|87306783|ref|ZP_01088930.1| Transcriptional Regulator, BadM/Rrf2 family protein [Blastopirellula marina DSM 3645] gi|87290962|gb|EAQ82849.1| Transcriptional Regulator, BadM/Rrf2 family protein [Blastopirellula marina DSM 3645] Length = 142 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M+++ +T+Y ++ A D P R+ ++A I FL +IL L AG+V++ R Sbjct: 1 MNISAKTEYACVAMIELAALYDSGDPVRVRELAATHSIPAHFLTQILLQLKGAGMVQSTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G GG RL R +I+I D+ + E Sbjct: 61 GATGGYRLARDPSEISIYDIHRVIE 85 >gi|56698540|ref|YP_168916.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56680277|gb|AAV96943.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 172 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA-- 81 P R+ +AE + E +L K +Q L AGIVET RG RGG L R +I++L +V+A Sbjct: 27 PARL--LAEFFDLPEPYLAKQMQKLSAAGIVETRRGPRGGYALARAPAEISLLQMVQAID 84 Query: 82 TEESFF----VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 E F + C S D + CG+ + +A A+ L ++ L+R Sbjct: 85 GETRHFTCTELRRCGPSGVEDSQYLRPCGIARSMWRAEAAWRRELAGVTLADLLR 139 >gi|182414244|ref|YP_001819310.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1] gi|177841458|gb|ACB75710.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae PB90-1] Length = 137 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 16/137 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVET 56 M ++ + DY RVL A +H ++QI + +L FL +IL L G++ + Sbjct: 1 MKISTKVDYACRVLAELARLHGS--GELAQIEHLARVEKLPPNFLAQILSELRNGGLITS 58 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114 RG +GG L RP DQI++ D++ + + V E +H+ G G + V + Sbjct: 59 RRGIQGGYALARPPDQISLYDIITLIDGA--VLELSGNHE------GRSGRRIRQVWLEI 110 Query: 115 LNAFFDVLTQYSIECLV 131 +F + +Y+++ LV Sbjct: 111 RESFEEKTKRYTLDQLV 127 >gi|170016479|ref|YP_001727398.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803336|gb|ACA81954.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 166 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + ++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSNAVEQSLVVLVMLALQKDELPIKSYLLSNRLEVSESYLKKTMRKLVVAGIVQAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 + GG +L R IT+LDV +A E Sbjct: 61 KEGGFKLARSIADITLLDVYEAIE 84 >gi|260598923|ref|YP_003211494.1| DNA-binding transcriptional regulator IscR [Cronobacter turicensis z3032] gi|260218100|emb|CBA32871.1| HTH-type transcriptional regulator iscR [Cronobacter turicensis z3032] Length = 162 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A QI + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDES 86 >gi|218661187|ref|ZP_03517117.1| putative transcriptional regulator protein [Rhizobium etli IE4771] gi|218675215|ref|ZP_03524884.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 148 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNR 134 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPR 138 >gi|317050737|ref|YP_004111853.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] gi|316945821|gb|ADU65297.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] Length = 147 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K TDY +R+ +Y A + ++S+I + +++ + K++Q L + G+V + G+ GG+ Sbjct: 7 KETDYALRIAVYLANKQERV-KVSEICQKLNLTKPVVIKVIQMLKRHGLVASKTGKYGGL 65 Query: 65 RLCRPADQITILDVVKATEESFFVAECF 92 L P ++I++ DV+ + + C Sbjct: 66 SLAHPPEEISVYDVLVSMSADHSINTCL 93 >gi|229095595|ref|ZP_04226579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] gi|228687839|gb|EEL41733.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] Length = 140 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +SE FL K+ L KAGIV +V G +GG RL + + ++ DV++A E + Sbjct: 1 MAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60 Query: 90 EC 91 +C Sbjct: 61 QC 62 >gi|149278443|ref|ZP_01884580.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp. BAL39] gi|149230813|gb|EDM36195.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp. BAL39] Length = 156 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 46/87 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T + +YG+R+L+ A I+ I+E+ +S ++ K+ + L AG + + G Sbjct: 1 MKITAQEEYGLRILLRIARQGKEGLSIAAISESEGLSTAYVAKLTRLLRMAGYINSTPGN 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87 +GG L PA +I I V+K + F Sbjct: 61 KGGYSLAMPAAEININKVLKVLGGALF 87 >gi|89890072|ref|ZP_01201583.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium BBFL7] gi|89518345|gb|EAS21001.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium BBFL7] Length = 138 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T YGI+ L Y A + N+ P IS IA+A I FL IL L K I+ + +G+ Sbjct: 4 LSRKTKYGIKALTYLARLDNNEPVSISTIADAEQIPHKFLEAILLELRKNSILGSRKGKG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + + + E + C F DC +C + ++ + + Sbjct: 64 GGYYLMQSPETVRMSSIHRVLEGPIAMLPCVSLNFYEKCEDCIDEETCAVNKLMIQVRDN 123 Query: 118 FFDVLTQYSIECLVR 132 +L +++ L++ Sbjct: 124 TLAILENQTLKDLIK 138 >gi|305665393|ref|YP_003861680.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170] gi|88710148|gb|EAR02380.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170] Length = 143 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + Y ++ ++Y A+++ N+I I+E + + +L K+LQ L + IV + RG Sbjct: 3 SNSSKYALKAVLYLAVNSSESNKILAKNISEPINVPQAYLAKLLQELSRYNIVSSTRGPN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPL 101 GG L + T++++V + + C S ++ CPL Sbjct: 63 GGFYLSGQNKKTTLIEIVNVIDGDNRLNSCLLSLQNCDNEKPCPL 107 >gi|146278399|ref|YP_001168558.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556640|gb|ABP71253.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 155 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L+ A+ N + +AE IS +L ++ L +AG+VE V Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L R A +I + ++++A EE+ A + LT+ L + L+A Sbjct: 61 RGPGGGYKLARDAQEIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120 Query: 118 FFDV-LTQYSIECLVRN 133 V L Q + +++N Sbjct: 121 HVYVFLHQTRLSDIIKN 137 >gi|269956765|ref|YP_003326554.1| BadM/Rrf2 family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305446|gb|ACZ30996.1| transcriptional regulator, BadM/Rrf2 family [Xylanimonas cellulosilytica DSM 15894] Length = 168 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T + DY +R+ + A D + ++A A I ++ IL L + G+VET R Sbjct: 1 MRITAKIDYAVRLCVELAARYDGGGYAKSDELATAQQIPANYVLGILNSLKQTGLVETRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G GG RL QI + DV++A + Sbjct: 61 GADGGARLASDPAQIAVADVIRAID 85 >gi|116250351|ref|YP_766189.1| Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254999|emb|CAK06073.1| putative Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 166 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + +AE +S +L K LQ L AGI++TV G +GG RL + +I++LD+V A E S Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAPKEISLLDIVLAVEGS 86 >gi|94309969|ref|YP_583179.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353821|gb|ABF07910.1| transcriptional regulator of iron sulfur clusterassembly [Cupriavidus metallidurans CH34] Length = 184 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+ +T+ D++ A +E +C Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQC 92 >gi|153011488|ref|YP_001372702.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563376|gb|ABS16873.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi ATCC 49188] Length = 143 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L RPA +I I ++++A + + C Sbjct: 62 GGFCLARPAHEIAIGNIIRALDGALAPIAC 91 >gi|291523627|emb|CBK81920.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus GD/7] Length = 140 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++ + Y +RV+ Y A++ D P + +IAEA IS +L I + L K +E G Sbjct: 4 ISSKGRYALRVMTYLAVNADREFVP--LKEIAEAESISLKYLESIARMLSKEHYIEGTSG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L R + + D+++ TE + C + C C V + N Sbjct: 62 RGGGYHLTRKPEAYKVGDILRLTEGTLAPVSCLKDNAEPCGRAELCCTLPVWQGLSNVIT 121 Query: 120 DVLTQYSI 127 D L ++ Sbjct: 122 DYLDNMTL 129 >gi|253997038|ref|YP_003049102.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983717|gb|ACT48575.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis JLW8] Length = 168 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 10/148 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY------PNRISQIAEACCISELFLFKILQPLVKAGIV 54 M LT + + + ++ AI+ P ++ I+E IS +L ++ L + G+V Sbjct: 1 MRLTTKGRFAVTAMLDLAINETKDALEAKPVTLAGISERQDISLSYLEQLFSRLRRQGLV 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +++RG GG L + +I++ +++ A +E +C H+ +C G C +T L A Sbjct: 61 KSIRGPGGGYNLAKSHSEISVAEIIHAVDEQIDATQC-GGHE-NCRDEGRC-MTHDLWSA 117 Query: 115 LNA-FFDVLTQYSIECLVRNRSSIKKIF 141 LN + L ++ +V ++ S +KI Sbjct: 118 LNTKILEYLDGITLADMVASQKSGQKIL 145 >gi|194289262|ref|YP_002005169.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223097|emb|CAQ69102.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG 19424] Length = 183 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A+ +T+ D++ A +E +C K +C G +T L LN Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGG--KGNCNGDDGSGRCMTHELWATLNQ 118 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 119 KMVEYLDSVSLKNLV 133 >gi|197334970|ref|YP_002155373.1| Rrf2 family protein [Vibrio fischeri MJ11] gi|197316460|gb|ACH65907.1| Rrf2 family protein [Vibrio fischeri MJ11] Length = 155 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG GG RL A+Q Sbjct: 1 MLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRGPGGGYRLGLKAEQ 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----FFDVLT 123 I + V+ A +ES +C K C C LT L + L++ F D +T Sbjct: 61 IAVGMVISAVDESVDATKCHG--KEGCQGGTRC-LTHTLWRDLSSRISTFLDGIT 112 >gi|209548376|ref|YP_002280293.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534132|gb|ACI54067.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNR 134 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPR 138 >gi|86356775|ref|YP_468667.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280877|gb|ABC89940.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNR 134 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPR 138 >gi|218463759|ref|ZP_03503850.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli Kim 5] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPRQG 140 >gi|196250088|ref|ZP_03148782.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] gi|196210272|gb|EDY05037.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] Length = 138 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L +IT D+++ E Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLE 84 >gi|241202984|ref|YP_002974080.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856874|gb|ACS54541.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 166 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + +AE +S +L K LQ L AGI++TV G +GG RL + +I++LD+V A E S Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAPKEISLLDIVLAVEGS 86 >gi|288958849|ref|YP_003449190.1| HTH-type transcriptional regulator [Azospirillum sp. B510] gi|288911157|dbj|BAI72646.1| HTH-type transcriptional regulator [Azospirillum sp. B510] Length = 158 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A P ++ IAE IS +L ++ L K G+V++VRG Sbjct: 1 MRLSTKGRYAVMAMVDLAATSQGSPVALADIAERQEISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PAD + D++ A +E C Sbjct: 61 PGGGYLLAHPADATRVSDIILAVDEPIRTTRC 92 >gi|283780983|ref|YP_003371738.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283439436|gb|ADB17878.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 175 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + GI L+ C + P ++A +S + K+L L +AG+V + G+ GG L Sbjct: 9 EIGIHTLL-CLLRTTQPVSSHELATYQGLSPTHVAKVLGRLQQAGVVASSPGKTGGYLLA 67 Query: 68 RPADQITILDVVKATE---------ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 R A +I++ DVV A E + F E A + C + S +++A +A Sbjct: 68 RSAAEISLTDVVDAIEGPKPLFACRDIRFRCELLAGDPPEWATCSMCAVNSAMKRAESAM 127 Query: 119 FDVLTQYSIECL 130 DVL + ++ L Sbjct: 128 RDVLAKTTLRQL 139 >gi|229160056|ref|ZP_04288058.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] gi|228623367|gb|EEK80191.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] Length = 140 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +SE FL K+ L KAGIV +V G +GG RL + + ++ DV++A E + Sbjct: 1 MAEFQGLSETFLSKVFGKLSKAGIVSSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60 Query: 90 EC 91 +C Sbjct: 61 QC 62 >gi|217077940|ref|YP_002335658.1| Rrf2 family protein [Thermosipho africanus TCF52B] gi|217037795|gb|ACJ76317.1| Rrf2 family protein [Thermosipho africanus TCF52B] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLF--KILQPLVKAGIVETVR 58 M +T ++DY +R+L+ +I N + S++ C S + F KIL LV +GI+E+ R Sbjct: 1 MAVTMKSDYALRLLLLLSIENKRMS-TSELISKCKTSIPYEFAQKILSQLVASGILESSR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKID-CPLVGSCGLTSVLRKALN 116 G+ GG +L + IT+ D+V + ++ + CF KI P + C + V + Sbjct: 60 GKFGGYKLVKDPKDITVYDIVTSVDDISSMITCFVPPDKISLAPEI--CSVNEVWEIVMK 117 Query: 117 AFFDVLTQYSIECL 130 F L ++E L Sbjct: 118 RFKQSLKSVTLEDL 131 >gi|149277390|ref|ZP_01883531.1| transcriptional regulator, rrf2 family protein [Pedobacter sp. BAL39] gi|149231623|gb|EDM37001.1| transcriptional regulator, rrf2 family protein [Pedobacter sp. BAL39] Length = 145 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ L+ + + P +I ++AE I FL +IL + AG + + +G Sbjct: 2 LSKKTKYAIKALVALGKNVGNPPMQIVKLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116 GG L + A I + D+++ T+ + C AS K +C +CG+ N Sbjct: 62 GGYSLNKDAADIFLADILRITDGPIAMVPC-ASLKFYRKCDECHDEVTCGIRKTFIDVRN 120 Query: 117 AFFDVLTQYSI 127 A VL Q SI Sbjct: 121 ATLKVLAQTSI 131 >gi|323488201|ref|ZP_08093452.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2] gi|323398205|gb|EGA91000.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2] Length = 168 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK + I +++ A + P +I++ +S ++ KI + LV GI +V G Sbjct: 1 MQLTKGVEQAICIIVLLATQESSAPLASDEISKRLGVSPSYMKKITRKLVVQGIAVSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GGV L + A IT+LDV++A E Sbjct: 61 NNGGVSLAKSATDITMLDVIEAME 84 >gi|262201958|ref|YP_003273166.1| hypothetical protein Gbro_2020 [Gordonia bronchialis DSM 43247] gi|262085305|gb|ACY21273.1| protein of unknown function UPF0074 [Gordonia bronchialis DSM 43247] Length = 177 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLM--------YCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKA 51 M LT+ TD G+RV+M + P ++ +A + + K++ L + Sbjct: 13 MQLTRFTDIGLRVVMRLVAAEAAARETASGPPTLTTKDLAAELAVPYTHVAKVVSRLSEL 72 Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 G+V + RGR GG+ + + + + E V +C + CPL +C L L Sbjct: 73 GVVHSRRGRSGGLMITDLGRAARVGWLAETLEGPGEVVDCNSPEP--CPLRAACHLRGAL 130 Query: 112 RKALNAFFDVLTQYSIECLV 131 +A NAFF L +++I LV Sbjct: 131 AQARNAFFRSLDEHAIVDLV 150 >gi|148979595|ref|ZP_01815600.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3] gi|145961680|gb|EDK26977.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3] Length = 160 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAGD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I + V+ A +ES +C + DC C LT L + L++ Sbjct: 61 IAVGTVIAAVDESVDATKCHG--RADCQGGSRC-LTHTLWRDLSS 102 >gi|116251030|ref|YP_766868.1| Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255678|emb|CAK06759.1| putative Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L G+V + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I + + S Sbjct: 122 TRKVLFSTTIADAIAPKHS 140 >gi|146320050|ref|YP_001199761.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253751100|ref|YP_003024241.1| transcriptional regulator [Streptococcus suis SC84] gi|253753001|ref|YP_003026141.1| transcriptional regulator [Streptococcus suis P1/7] gi|145690856|gb|ABP91361.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251815389|emb|CAZ50962.1| putative transcriptional regulator protein [Streptococcus suis SC84] gi|251819246|emb|CAR44507.1| putative transcriptional regulator protein [Streptococcus suis P1/7] gi|292557653|gb|ADE30654.1| Transcriptional regulator, Rrf2 [Streptococcus suis GZ1] gi|319757362|gb|ADV69304.1| transcriptional regulator [Streptococcus suis JS14] Length = 139 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + S IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG RL + DQIT+L V +A E + FA H+ P Sbjct: 61 I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNP 100 >gi|78189454|ref|YP_379792.1| hypothetical protein Cag_1493 [Chlorobium chlorochromatii CaD3] gi|78171653|gb|ABB28749.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium chlorochromatii CaD3] Length = 143 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LTK+ DY IR L+ A IAEA I FL +LQ L+ +V + G G Sbjct: 4 LTKKADYAIRALLMLAAKEGGFMSAKAIAEAQDIPYQFLRSLLQELMHHHLVASKEGAHG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G R+ D I++ +++ + V+EC ++ C SC L + + Sbjct: 64 GFRIETNPDNISVKQLIEIFQGEVQVSECMFRKQV-CRNRSSCVLRHEIMRIEEVVSHEF 122 Query: 123 TQYSIECLVRN 133 Q +I L+R Sbjct: 123 GQLTIGSLLRK 133 >gi|302023274|ref|ZP_07248485.1| transcriptional regulator protein [Streptococcus suis 05HAS68] Length = 139 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + S IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG RL + DQIT+L V +A E + FA H+ P Sbjct: 61 V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNP 100 >gi|315499746|ref|YP_004088549.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis excentricus CB 48] gi|315417758|gb|ADU14398.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis excentricus CB 48] Length = 172 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 18/153 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A++ P +S+I+E IS +L ++ L KAG+V++ RG Sbjct: 1 MRLSTKGRYAVMAMTDLALNAQGKPISLSEISERQQISLSYLEQLFARLRKAGLVKSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----------------ASHKIDCPLVG 103 GG L R AD + + ++V A +E C A+ +I C G Sbjct: 61 PGGGYTLARTADALFVSEIVLAVDEPIKATRCALTSNKLGANKRLSKESAAREIGCMPGG 120 Query: 104 SCGLTSVLRKALN-AFFDVLTQYSIECLVRNRS 135 LT L + L A D L+ S+ +V R+ Sbjct: 121 QRCLTHNLWEDLGFAIHDYLSTVSLNDVVHKRT 153 >gi|226357841|ref|YP_002787581.1| transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115] gi|226320084|gb|ACO48077.1| putative transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115] Length = 138 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%) Query: 23 YPNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 YP+ +IA + ++ + + ++ L KAG+++T +G G RL RP + IT+LDV Sbjct: 18 YPHNARTSDEIAASVGVNPVVVRNVMSLLRKAGLLDTRQGSPGA-RLIRPPEAITLLDVY 76 Query: 80 KATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSI 127 A V + CP+ G+ LT+VL A A D L ++ Sbjct: 77 HAVNAPELVFKLHDQPHPQCPVGGNIQAALTTVLGNAQQAMEDHLATVTL 126 >gi|159897735|ref|YP_001543982.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890774|gb|ABX03854.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon aurantiacus ATCC 23779] Length = 139 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 37/57 (64%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 +IA+ I++ + K++Q L AG++ET G +GGVRL R + I +LD+ A E++ Sbjct: 33 EIADFLGIAKPSVVKVVQSLTNAGLIETREGAKGGVRLTRNSQAINLLDIFNAIEQA 89 >gi|325168404|ref|YP_004280194.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Agrobacterium sp. H13-3] gi|325168902|ref|YP_004280692.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Agrobacterium sp. H13-3] gi|325064127|gb|ADY67816.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp. H13-3] gi|325064625|gb|ADY68314.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp. H13-3] Length = 162 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 10/116 (8%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P+ +AE + + +L K LQ L +AG+V T G GG RL R + Sbjct: 14 CAILAGLPDGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTTLGPSGGYRLARAPAK 73 Query: 73 ITILDVVKATEES--FFVAECFASHKIDCPL----VGSCGLTSVLRKALNAFFDVL 122 +T LDVV+A E S FV + ++ P G C + ++ +A A+ VL Sbjct: 74 LTFLDVVEAVEGSGRTFVCQNIRANNPCRPKGYCESGPCAIARIMWEADEAWRTVL 129 >gi|83595124|ref|YP_428876.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83578038|gb|ABC24589.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 151 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+K+ + I ++ A H P + +I I +L + LQ LV++G++ VRG Sbjct: 2 IRLSKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQHLVRSGVLTGVRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG RL R +ITI ++V+ + + E L GS V+R N Sbjct: 62 PRGGYRLARERRRITIGEIVRVVRDLEAIDEAVDE------LPGSDLGRQVVRPLWNELH 115 Query: 120 DVL 122 D L Sbjct: 116 DEL 118 >gi|325272149|ref|ZP_08138580.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51] gi|171362773|dbj|BAG15850.1| probable transcriptional regulator [Pseudomonas putida] gi|324102712|gb|EGC00128.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 163 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R + I + V+ A ES C Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 92 >gi|104780228|ref|YP_606726.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas entomophila L48] gi|95109215|emb|CAK13912.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas entomophila L48] Length = 163 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R + I + V+ A ES C Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 92 >gi|325962157|ref|YP_004240063.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Arthrobacter phenanthrenivorans Sphe3] gi|323468244|gb|ADX71929.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter phenanthrenivorans Sphe3] Length = 149 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R LM A + +Q IA++ + K + L G+++ VRG Sbjct: 1 MKINAFADVSLRALMVLAAAPEGALLTTQNIADSVGTPYNHVSKAMAKLRSLGLIDVVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L T+ V++ + A+C A +CPL+ C L S L +A AF+ Sbjct: 61 RTGGSSLSHAGRYATVGQVLRQLDTRTDAADCVAPGG-NCPLINECKLRSALARAREAFY 119 Query: 120 DVLTQYSIECL 130 L I L Sbjct: 120 RELDSVVIADL 130 >gi|325104343|ref|YP_004273997.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324973191|gb|ADY52175.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 5/147 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+T Y ++ LM A + + P I++IA+ + + FL IL L + I+ + G Sbjct: 2 LTKKTKYAVKALMALARNGENKPMLIAEIAKQEGLPKRFLEAILLDLKRGQILGSRMGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA +I +++V++ + + C F +C +C + ++ + +A Sbjct: 62 GGYFLVKPASEIMVVNVIRILDGPIALLPCVSLNFYQRCEECVDEVTCSIREMMGRVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 +++ SI LV + + G Sbjct: 122 SIEIMGHTSIADLVAKEKELGGNLSEG 148 >gi|227498969|ref|ZP_03929106.1| transcriptional regulator [Acidaminococcus sp. D21] gi|226904418|gb|EEH90336.1| transcriptional regulator [Acidaminococcus sp. D21] Length = 141 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y +R+++ A++ N P I ++E ISE +L +I+ L +A +V++ Sbjct: 1 MKISTKGRYALRLMLDLAMNGKENFVP--IRSVSERQEISEKYLEQIITALSRAKLVKSA 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG +GG +L + ++ T ++++A E S C C C ++ ++ A Sbjct: 59 RGAQGGYKLVKAPEEYTTGEILRAVEGSLAPVACLEPGHTVCARAKKCITLNLYKEIQEA 118 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 V+ + ++ LV + + K Sbjct: 119 VDSVVDRTTLADLVAQQEAQDK 140 >gi|138896135|ref|YP_001126588.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2] gi|134267648|gb|ABO67843.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2] Length = 139 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA A +SE +L +++ PL AG+V+++RG Sbjct: 2 MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L +IT D+++ E Sbjct: 62 AYGGYVLAEHPAKITAGDILRVLE 85 >gi|300312445|ref|YP_003776537.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075230|gb|ADJ64629.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P +S I+E IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116 GG L R A +++ D++ A +E +C H P C +T L LN Sbjct: 61 PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARC-MTHDLWSTLN 119 Query: 117 A-FFDVLTQYSIECLVRNRSSIK 138 + L S++ LV + K Sbjct: 120 EKMVEYLDSVSLQDLVDQQKEPK 142 >gi|119356346|ref|YP_910990.1| BadM/Rrf2 family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119353695|gb|ABL64566.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides DSM 266] Length = 164 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LTK TDY IR L++ IA I FL +++Q ++ G+V + G G Sbjct: 4 LTKNTDYAIRALLFLGARKGSYVSAKTIAAEQEIPYQFLRRLMQDMIGHGLVVSKGGASG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G L + D I I D+++ + V+EC K+ C +C L + + Sbjct: 64 GFMLLKEPDGIRINDLIEIFQGKIQVSECMFRKKL-CSNRATCVLRHEIMRIEQVVHQEF 122 Query: 123 TQYSIECLVRN 133 + +I L+R+ Sbjct: 123 EKVTIGKLMRD 133 >gi|255020951|ref|ZP_05293007.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus caldus ATCC 51756] gi|254969742|gb|EET27248.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus caldus ATCC 51756] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Query: 14 LMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H D ++ I++ IS +L ++ L + G+VE+VRG GG RL P Q Sbjct: 1 MLDLALHQDGGVVTVADISQRQQISVAYLEQLFGRLRRRGLVESVRGPGGGYRLADPTAQ 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFFDVLT 123 I + +V+A ES +C C G LT L +AL AF +T Sbjct: 61 IPLTQIVEAVNESIHTTQCGGDPVQCCKGEGQQCLTHDLWEALGQQIAAFLGGIT 115 >gi|56461141|ref|YP_156422.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180151|gb|AAV82873.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina loihiensis L2TR] Length = 159 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+ + P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALFTANGPVPLADISERQGISLSYLEQLFSRLRKHGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL---- 115 GG RL A+ I++ V+ A +ES C K +C C LT L + L Sbjct: 61 PGGGYRLGCAANDISVGAVIHAVDESIDATRCQG--KANCQGGERC-LTHSLWEGLSDRI 117 Query: 116 NAFFDVLT 123 + F D +T Sbjct: 118 SDFLDGIT 125 >gi|150395418|ref|YP_001325885.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150026933|gb|ABR59050.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 153 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I++IA+ I + FL IL L AG++ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSC----GLTSVLRK 113 GG L RPA +I I V++ + C + +++I DC +C +TSV R Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEICEDCSDPETCRVRISMTSV-RD 120 Query: 114 ALNAFFDVLT 123 A+++ D +T Sbjct: 121 AMSSILDSMT 130 >gi|307293474|ref|ZP_07573318.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] gi|306879625|gb|EFN10842.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] Length = 141 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA--SHK--IDCPLVGSCGLTSVLRKALNA 117 GG L I+ D+V+ T S + C + +H+ +C C L V+ + + Sbjct: 62 GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121 Query: 118 FFDVLTQYSI 127 VL S+ Sbjct: 122 TAKVLDSISL 131 >gi|167031899|ref|YP_001667130.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida GB-1] gi|166858387|gb|ABY96794.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida GB-1] Length = 182 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 20 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R + I + V+ A ES C Sbjct: 80 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 111 >gi|331092200|ref|ZP_08341030.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401972|gb|EGG81546.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium 2_1_46FAA] Length = 133 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK DY IR+ M ++ N +S I +S +KI + L KAG+++++RG Sbjct: 1 MLFTKECDYAIRI-MRALSSGEFIN-VSTICTMENLSSAMTYKITRKLEKAGLLKSLRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L R I++ DV + E + EC Sbjct: 59 NGGYALNRSLKDISLYDVCTSIEPDILLLECM 90 >gi|302671823|ref|YP_003831783.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396296|gb|ADL35201.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus B316] Length = 131 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ Y +R+L+ A +D + IAE IS+ +L I + LVK G++ G+ Sbjct: 2 FSTKSRYALRILIDLAQQKSDDFIPLKDIAERQDISKKYLEIIAKDLVKGGLIRGASGKH 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 GG L R + ++ +++ E +F C + +CP G C S+ Sbjct: 62 GGYMLTRAPEDYSVGEIIDHMEGTFAPVVCLEENAGECPRSGVCKTISMW 111 >gi|299144222|ref|ZP_07037302.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518707|gb|EFI42446.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 132 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + ++ + + P I+ IA+ +SE +L ++ L K +V+++RG Sbjct: 1 MKLSTKGRYGLMAMYRLSLNYGNGPTPINDIAKEEKLSEAYLEQLFTLLKKKNLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALN 116 GG L + +I I +++ A E ++ + K +C V +C +L K L Sbjct: 61 AAGGYELAKSPSEIKIGEILNALEGDIALSCSSMNIKPECRNVETCPTREILEKLQIKLE 120 Query: 117 AFFDVLT 123 D +T Sbjct: 121 EVLDSMT 127 >gi|148263560|ref|YP_001230266.1| BadM/Rrf2 family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397060|gb|ABQ25693.1| transcriptional regulator, BadM/Rrf2 family [Geobacter uraniireducens Rf4] Length = 141 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ +++ D P + +IA+ I +L ++ L GIV ++RG Sbjct: 1 MRLSTRAQYAVRAMVDLSLYATDKPVSLKEIAQREDIPLSYLEQLFFRLKNGGIVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L R + I + ++V EE C C V C + L + + Sbjct: 61 PGGGYILARNSALIKVGEIVVTVEEPLSPVACMDEGSTGCSRVSRCVTHNIWKDLGERIR 120 Query: 117 AFFDVLT 123 F D +T Sbjct: 121 GFLDAIT 127 >gi|34762328|ref|ZP_00143331.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741835|ref|ZP_04572316.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845171|ref|ZP_05550629.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2] gi|294785526|ref|ZP_06750814.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] gi|27887982|gb|EAA25046.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429483|gb|EEO39695.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256718730|gb|EEU32285.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2] gi|294487240|gb|EFG34602.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] Length = 140 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y +H D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIIYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 60 GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSTTICSTRGADCTIRHALKKIQDEL 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 120 LDDFDKINFYDLVENSTGLQ 139 >gi|319442413|ref|ZP_07991569.1| Rrf2 family transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 159 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 10/139 (7%) Query: 1 MHLTKRTDYGIRVLMY-----CAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGI 53 MHLTK D G+R LM A D R + ++A + K++ L G+ Sbjct: 1 MHLTKFADLGLRSLMILGDTGAAGATDPSQRRTVGELAVQTAAPASHVKKVVARLTGLGV 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLR 112 + +VRGR GGV L A I +++ E V +C + CPL C L +L Sbjct: 61 LASVRGRSGGVYLADGARDTDIGRLLRELEGRHEVVDC--EGEAPCPLAARDCSLRHLLA 118 Query: 113 KALNAFFDVLTQYSIECLV 131 +A FF ++ L+ Sbjct: 119 QAQENFFATFDGMTLGELI 137 >gi|309777294|ref|ZP_07672256.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308914974|gb|EFP60752.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 138 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT- 82 P + S++++ +S+ +L KI++ LVKA IV ++ + GG L R QIT LD+ A Sbjct: 23 PVKSSELSKKLDVSDSYLKKIMRQLVKANIVSSIASKTGGFVLLRSPSQITFLDLFNAIE 82 Query: 83 -EESFFVAECFASHKIDC 99 EE F V+ D Sbjct: 83 GEEEFAVSTSLVDKVFDS 100 >gi|325679872|ref|ZP_08159441.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] gi|324108310|gb|EGC02557.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] Length = 150 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 5/110 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + ++GI L AI+ N S I+ IS+ +L +IL L +AG + + Sbjct: 1 MKISTKVEFGIVALADIAIYSVNGETVSSSDISSRQNISQKYLEQILVALRQAGFIRGQK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSC 105 G RGG L RPA +I+ +++ + + + D L V SC Sbjct: 61 GSRGGYTLARPASEISFSEILNGLDNNILADTYVSEDDTDGGLRDKVNSC 110 >gi|283778130|ref|YP_003368885.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283436583|gb|ADB15025.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 142 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ +T+Y ++ A ++ P RI IA+ I FL +IL L AG+V++VR Sbjct: 1 MIVSAKTEYACIAMLELAARDERSEPVRIKDIADRHGIPSRFLVQILLQLKTAGLVQSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 G GG +L P +IT+ V+ A + A +S D P Sbjct: 61 GASGGYQLALPPREITLGTVMSAVDAQS--ARVVSSLTSDSP 100 >gi|241662560|ref|YP_002980920.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12D] gi|309781143|ref|ZP_07675880.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia sp. 5_7_47FAA] gi|240864587|gb|ACS62248.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12D] gi|308919964|gb|EFP65624.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia sp. 5_7_47FAA] Length = 197 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 GG L R AD +T+ D++ A +E +C G+CG Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99 >gi|90579379|ref|ZP_01235189.1| hypothetical transcriptional regulator [Vibrio angustum S14] gi|90440212|gb|EAS65393.1| hypothetical transcriptional regulator [Vibrio angustum S14] Length = 158 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H ++ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 I + V+ A +ES +C K DC C LT L L+ Sbjct: 61 IAVGMVIAAVDESVDATKCHG--KGDCQGGARC-LTHTLWHDLS 101 >gi|260776733|ref|ZP_05885628.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC BAA-450] gi|260607956|gb|EEX34221.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC BAA-450] Length = 155 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAHS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I I V+ A +ES +C + DC C LT L + L++ Sbjct: 61 IAIGTVIAAVDESVDATKCNG--RADCQGGTRC-LTHTLWRDLSS 102 >gi|26987577|ref|NP_743002.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida KT2440] gi|24982253|gb|AAN66466.1|AE016276_1 rrf2 family protein [Pseudomonas putida KT2440] Length = 163 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R + I + V+ A ES C Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 92 >gi|187927978|ref|YP_001898465.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12J] gi|187724868|gb|ACD26033.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12J] Length = 197 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 GG L R AD +T+ D++ A +E +C G+CG Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99 >gi|156932917|ref|YP_001436833.1| DNA-binding transcriptional regulator IscR [Cronobacter sakazakii ATCC BAA-894] gi|189044748|sp|A7MGX6|ISCR_ENTS8 RecName: Full=HTH-type transcriptional regulator iscR gi|156531171|gb|ABU75997.1| hypothetical protein ESA_00720 [Cronobacter sakazakii ATCC BAA-894] Length = 162 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A QI + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDES 86 >gi|77460834|ref|YP_350341.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384837|gb|ABA76350.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens Pf0-1] Length = 163 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R I + V+ A ES +C + DC +C Sbjct: 61 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQG--QGDCHSGDTC 104 >gi|148546115|ref|YP_001266217.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida F1] gi|148510173|gb|ABQ77033.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida F1] Length = 182 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 20 MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R + I + V+ A ES C Sbjct: 80 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 111 >gi|295676234|ref|YP_003604758.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] gi|295436077|gb|ADG15247.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] Length = 149 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPVLIRRLLAMLSEAGLTTSQMGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L R +QIT+LDV +A E+ A+ FA H+ Sbjct: 61 GGGALLARRPEQITLLDVYRAVED----AQLFALHR 92 >gi|17545737|ref|NP_519139.1| hypothetical protein RSc1018 [Ralstonia solanacearum GMI1000] gi|17428031|emb|CAD14720.1| putative of unknown function upf0074; transcription regulator protein [Ralstonia solanacearum GMI1000] gi|299066983|emb|CBJ38178.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum CMR15] Length = 193 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 18/141 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVL 111 GG L R AD +T+ D++ A +E +C G+CG +T L Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCGGEEHSGRCMTHDL 112 Query: 112 RKALNA-FFDVLTQYSIECLV 131 LN + L S++ LV Sbjct: 113 WATLNQKMVEYLDSVSLQNLV 133 >gi|18310768|ref|NP_562702.1| hypothetical protein CPE1786 [Clostridium perfringens str. 13] gi|18145449|dbj|BAB81492.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 128 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I I++ ISE +L ++ L KA +++++RG +GG L R + IT+ D+++ E Sbjct: 3 IKSISQRQNISEYYLEQLFSSLRKAKLIKSIRGAQGGYILNRQPEDITVSDIIEVLEGPI 62 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 +++C + C V C + +K + +V +++ +V + ++K+ Sbjct: 63 EISDCLDG--VTCNNVDCCATRLLWKKIKTSIDEVTNSVTLKDIVEDYKAMKE 113 >gi|291457248|ref|ZP_06596638.1| transcriptional regulator family protein [Bifidobacterium breve DSM 20213] gi|291381083|gb|EFE88601.1| transcriptional regulator family protein [Bifidobacterium breve DSM 20213] Length = 135 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y N + P++I +AE C + + K+++PL AG+ T G GG L +P Sbjct: 1 MHALVYLDHRNTHLPSQI--LAENICTNAARVRKVMRPLAAAGLAATKEGAEGGYALAQP 58 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A IT+ V +AT +F A + C ++S + ++ +D L + +E Sbjct: 59 AADITLSTVAEATGTTFVDANWKPG-----DIHEECLVSSSMGAVMDGIYDGLNRTCLEQ 113 Query: 130 LVR 132 L Sbjct: 114 LAH 116 >gi|207725261|ref|YP_002255657.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] gi|206590495|emb|CAQ37457.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] Length = 193 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 GG L R AD +T+ D++ A +E +C G+CG Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99 >gi|91788050|ref|YP_549002.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666] gi|91697275|gb|ABE44104.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666] Length = 178 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + N P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQNSGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117 GG L R A +IT+ D++ + +E +C K +C G +T L +LN+ Sbjct: 61 PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGGRCMTHELWASLNSRM 118 Query: 118 --FFDVLT-------QYSIECLVRNRSSIKK 139 F D +T Q + +V N +KK Sbjct: 119 VEFLDSVTLQKLVDDQLAKGVVVENTPQVKK 149 >gi|319953691|ref|YP_004164958.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola DSM 14237] gi|319422351|gb|ADV49460.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola DSM 14237] Length = 136 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L + A D P +IS+IA A IS+ FL IL L K G + + +G+ Sbjct: 2 LSKKTKYGLKALTFLAQQVDRQPVQISEIANAENISQKFLETILLSLRKTGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + V++ E + C F DCP +CG+ ++ + ++ Sbjct: 62 GGYYLIKDPAEIQMASVMRVLEGPISMVPCVSLNFYEKCDDCPDEAACGVHKLMLQVRDS 121 Query: 118 FFDVLTQYSIECLV 131 ++ S+ L+ Sbjct: 122 NLEIYRNTSLADLI 135 >gi|81230337|ref|YP_398716.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|215481753|ref|NP_665782.3| ANL44 [Synechococcus elongatus PCC 7942] gi|157400503|gb|AAM81169.3|AF441790_40 ANL44 [Synechococcus elongatus PCC 7942] gi|81170309|gb|ABB58647.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 144 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 +I +IA + +L +IL L K G + + RGR GG RL R QI ++D+ + EE+ Sbjct: 28 QIEEIASQQHLPTKYLGQILTLLRKQGFLISQRGRHGGYRLAREPWQIRLIDIYYSLEEA 87 Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 SH +V + +L + A+ + L Y+++ L Sbjct: 88 QQAGASLPSHATSSAMV----VDQLLHQIEAAWREPLEHYTLQDL 128 >gi|207743635|ref|YP_002260027.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] gi|206595034|emb|CAQ61961.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] Length = 193 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 GG L R AD +T+ D++ A +E +C G+CG Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99 >gi|70732290|ref|YP_262046.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens Pf-5] gi|68346589|gb|AAY94195.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens Pf-5] Length = 163 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + V+ A ES +C Sbjct: 61 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKC 92 >gi|294013220|ref|YP_003546680.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676550|dbj|BAI98068.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 141 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA--SHK--IDCPLVGSCGLTSVLRKALNA 117 GG L I+ D+V+ T S + C + +H+ +C C L V+ + + Sbjct: 62 GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121 Query: 118 FFDVLTQYSI 127 VL S+ Sbjct: 122 TAKVLDSISL 131 >gi|119512675|ref|ZP_01631749.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414] gi|119462690|gb|EAW43653.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414] Length = 129 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +I QIA I + +L ++L L + GIV++ RG +GG L R +IT+ DV++ Sbjct: 10 PMQIRQIAAQQSIPDRYLEQLLATLRRGGIVKSQRGSKGGYFLTREPWKITVFDVLECL- 68 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 E V C + + + + + ++A A VL Y+++ L R S +++ Sbjct: 69 EGLDVRTCEEDNNPKS--IDTAVIKEIWQEACQAANLVLQNYTLQELCEKRDSRRQL 123 >gi|145589675|ref|YP_001156272.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048081|gb|ABP34708.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 189 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRETHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKAL 115 GG L RP++++++ D++ A +E +C K +C G C +T L L Sbjct: 61 PGGGYTLARPSNEVSVADIIVAVDEPLDATQCGG--KGNCHSEEDTHGRC-MTHDLWSNL 117 Query: 116 NA-FFDVLTQYSIECLVRNR 134 N+ + L+ S++ LV+ + Sbjct: 118 NSKMVEYLSSVSLKDLVQQQ 137 >gi|85709197|ref|ZP_01040263.1| Rrf2 family protein [Erythrobacter sp. NAP1] gi|85690731|gb|EAQ30734.1| Rrf2 family protein [Erythrobacter sp. NAP1] Length = 162 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K ++ V A+ + + +AE + +L K +Q L +AGI ++VRG Sbjct: 1 MQLAKGIEWTTHVCTIIALLPEGKGLSVDALAEFFELPAAYLSKQMQALRRAGIAQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 + GG RL + D IT+LD+V A E Sbjct: 61 KGGGYRLAQSPDAITLLDIVIAIE 84 >gi|15964324|ref|NP_384677.1| hypothetical protein SMc02267 [Sinorhizobium meliloti 1021] gi|307307060|ref|ZP_07586799.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|307320140|ref|ZP_07599560.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|15073501|emb|CAC45143.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306894186|gb|EFN24952.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306902000|gb|EFN32599.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 151 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 12/148 (8%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I++IA+ I + FL IL L AG++ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGQTAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC----GLTSVLRK 113 GG L RPA +I I V++ + C + DC +C +TSV R Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEMCDDCTDPETCRVRISMTSV-RD 120 Query: 114 ALNAFFDVLT--QYSIECLVRNRSSIKK 139 A+++ D +T +++ ++ +S++K Sbjct: 121 AMSSILDSMTLAEFAAGGVLPPETSVEK 148 >gi|152976907|ref|YP_001376424.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025659|gb|ABS23429.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus NVH 391-98] Length = 143 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ V+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114 +GG L R D+IT+LDV KA E E + + ++CP+ + SVL +A Sbjct: 60 KGGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNVECPV--GANIQSVLEIILIQA 117 Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139 A VL +++ LV + +S I+K Sbjct: 118 QEAMEHVLANVTVQQLVTSLQSKIQK 143 >gi|160899434|ref|YP_001565016.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365018|gb|ABX36631.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans SPH-1] Length = 178 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A IT+ D++ + +E +C K +C +G G +T L ALN Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWAALNQ 116 Query: 118 ----FFDVLT 123 F D +T Sbjct: 117 RMVEFLDSVT 126 >gi|325263739|ref|ZP_08130472.1| Rrf2 family protein [Clostridium sp. D5] gi|324030777|gb|EGB92059.1| Rrf2 family protein [Clostridium sp. D5] Length = 142 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 8/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + ++ A+H+ ++ + IA +SE +L +I++ L + GIV++VR Sbjct: 1 MKMSTKGQYALEIVADLAMHSSKEHLESLKNIANRRDLSEKYLERIIKALREKGIVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115 G GG L + + + +L+V+ A E C IDC G C + Sbjct: 61 GAYGGYCLEKAPEDLMVLEVLTAVEGELTPVHCLTRESNCGIDC---GLCPTRNTWSDMW 117 Query: 116 NAFFDVLTQYSIECLVR 132 + + Q ++ +VR Sbjct: 118 SVMKGAVEQVTVADIVR 134 >gi|300865571|ref|ZP_07110350.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300336443|emb|CBN55500.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 147 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ + Y P + IA + +L K+L + ++G+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLSSQPGYGPASVKAIASRQELPAPYLEKLLIEMRRSGLVLSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R I++ +++A E+ E A H D + S+ + Sbjct: 61 TQGGYQLARRPASISLGQILEAVGETI---EPLAGHSPDATVAEDWVTFSLWNRLHKKIT 117 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L S+E L + S + + Sbjct: 118 EALYSISLEDLYYDVRSWQAV 138 >gi|313618824|gb|EFR90710.1| Rrf2 family protein [Listeria innocua FSL S4-378] Length = 83 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 GG L ++IT D+++ Sbjct: 61 AHGGYVLNGDPEKITAGDIIR 81 >gi|157165239|ref|YP_001467135.1| Rrf2 family protein (putative transcriptional regulator) [Campylobacter concisus 13826] gi|112801375|gb|EAT98719.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter concisus 13826] Length = 134 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+ + P + I+ IS+ FL KILQ L K G++++ +G Sbjct: 1 MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKDGVLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP 100 GG L + ++I +++ E+ V EC +S + CP Sbjct: 60 NGGFALNGEPENLSIKKIIECAEKRELSVFEC-SSSALGCP 99 >gi|86605908|ref|YP_474671.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab] gi|86554450|gb|ABC99408.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab] Length = 146 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 37/58 (63%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +I +IA I + +L ++L L + G+V + RG +GG L RP QI++LD+++A E Sbjct: 28 QIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGAKGGYSLARPPWQISLLDIIQAIE 85 >gi|19704228|ref|NP_603790.1| hypothetical protein FN0893 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328864|ref|ZP_06871375.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714456|gb|AAL95089.1| Hypothetical protein FN0893 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153985|gb|EFG94792.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 140 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y ++ D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIIYYLTLNRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 60 GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDDL 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D + + LV N +S++ Sbjct: 120 LDDFDKINFYDLVENNASLQ 139 >gi|325677675|ref|ZP_08157327.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] gi|324110643|gb|EGC04807.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] Length = 145 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M++T DY +R+ C + +++ C++ F KIL+ LV AG+V++ +G Sbjct: 1 MYITLEADYAVRITAELCKADGRLDAKT--LSDKTCVTLRFSLKILRKLVSAGLVKSFKG 58 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPLVGS-CGLTSVL 111 +GG + + IT+ V++A E ++ A+C +CP + C +T ++ Sbjct: 59 TQGGYMIAKSPKDITLRMVIEAIEGTYCFSRCLQPDADCSRGASGNCPFQDAFCDITKMV 118 Query: 112 RKALNAF 118 + L + Sbjct: 119 SEKLETY 125 >gi|168699748|ref|ZP_02732025.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata obscuriglobus UQM 2246] Length = 169 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ DY + +L Y N IAE +S F+ IL+ L ++G V + RG +G Sbjct: 4 LSRKADYALLILSYL-YQNKSGGTARAIAEQFGLSRSFVANILKELCQSGFVASHRGVKG 62 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH 95 G L R A +++ ++++ E+ F + C H Sbjct: 63 GYALSRDAAGVSLAELLETVEDGFRLTVCNTVH 95 >gi|52081678|ref|YP_080469.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580] gi|52787064|ref|YP_092893.1| hypothetical protein BLi03369 [Bacillus licheniformis ATCC 14580] gi|319647593|ref|ZP_08001812.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2] gi|52004889|gb|AAU24831.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580] gi|52349566|gb|AAU42200.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|317390319|gb|EFV71127.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2] Length = 144 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +D+ QIA++ + + + +I + L KAG++E RG Sbjct: 1 MKISSRFTIAVHMLSLMHVRSDHLTS-EQIADSVNTNPVIIRQISRLLKKAGLIEVKRG- 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSC---GLTSVLRKAL 115 GG L R A I++ DV KA E E F +H+ P VG+ L VL KA Sbjct: 59 TGGAHLLRDAGAISLYDVYKAV-EVVGEGELFHTHENPNPDCWVGANIHQVLELVLLKAQ 117 Query: 116 NAFFDVLTQYSIECL 130 A ++L + SI+ L Sbjct: 118 TAMENILKEMSIKEL 132 >gi|73541761|ref|YP_296281.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha JMP134] gi|72119174|gb|AAZ61437.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha JMP134] Length = 144 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A ++ P S IA + + + +++ L +AG+V ++ G Sbjct: 1 MTTSSRFAVAVHILTLLASASE-PLPSSLIAGSVGTNPALIRRLIGQLAEAGLVTSIMGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNA 117 GG L RPA++IT+LDV +A E + + ++ C +VG + L V +A +A Sbjct: 60 TGGSTLSRPAERITLLDVFRAVETTALITLHQSAPNPAC-MVGREITGALRQVADRAQSA 118 Query: 118 FFDVLTQYSIECLV 131 + L + +I ++ Sbjct: 119 MDNALAEITIASML 132 >gi|39996447|ref|NP_952398.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39983327|gb|AAR34721.1| Rrf2 family protein [Geobacter sulfurreducens PCA] Length = 153 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ ++Y A D P I+ +A I + FL IL L AG++++ +G+ Sbjct: 2 ISKKTKYALKAMLYLARERDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + +I++ +++ E +C + +C SCG+ V++ +A Sbjct: 62 GGYYLAQSPREISMGRIIRILEGPLAPVQCVSETSYSRCEECDDEWSCGIRLVMKDVRDA 121 Query: 118 FFDVL 122 +L Sbjct: 122 MATIL 126 >gi|221066571|ref|ZP_03542676.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] gi|264678869|ref|YP_003278776.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Comamonas testosteroni CNB-2] gi|299532420|ref|ZP_07045812.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] gi|220711594|gb|EED66962.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] gi|262209382|gb|ACY33480.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni CNB-2] gi|298719658|gb|EFI60623.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] Length = 178 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A IT+ D++ + +E +C K +C +G G +T L ALN Sbjct: 61 PGGGYTLARKATDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWAALNQ 116 Query: 118 ----FFDVLT 123 F D +T Sbjct: 117 RMVEFLDSVT 126 >gi|260654665|ref|ZP_05860155.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] gi|260630681|gb|EEX48875.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] Length = 133 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + IA+ +S+ +L +++ L +AG++ + RG GG L + +ITIL++V+A+ Sbjct: 14 PVSVMDIAQREELSDTYLEQLVSKLRRAGLLRSYRGANGGYELAKDPSEITILEIVQASG 73 Query: 84 ESFFVAECFASHKIDCPLV---GS-CGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 E EC + K C L GS C RK +A ++ ++E L+ S Sbjct: 74 EKLEFPECAFNEK-GCELARQRGSVCPSAFFWRKLSSAVLELSRSMTLEDLLSQSS 128 >gi|77165949|ref|YP_344474.1| hypothetical protein Noc_2491 [Nitrosococcus oceani ATCC 19707] gi|254433726|ref|ZP_05047234.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27] gi|76884263|gb|ABA58944.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207090059|gb|EDZ67330.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27] Length = 158 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K TDY I ++ A+ + + ++ + + KIL+ L +AG++ + RG Sbjct: 2 LRMSKMTDYAIVLMTRLAMDPKGQHAAADLSAQVEMPLPTVSKILKQLARAGLLLSARGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L RP + I++ +++ E + EC ++ +C C + + A + Sbjct: 62 QGGYSLGRPPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCSTRAHWEQINQAVYG 120 Query: 121 VLTQYSIECLVR 132 L + + +V+ Sbjct: 121 ALNEIKLSDMVQ 132 >gi|83313117|ref|YP_423381.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82947958|dbj|BAE52822.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 121 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + + + + ++L L KAG+V + RG GG L RPAD+I++LD+ +A +E A Sbjct: 11 IAGSVNTNPVVVRRLLSALAKAGLVSSTRGSAGGSVLARPADRISLLDIHRAVDEEEEPA 70 Query: 90 ECFASHKIDCPL 101 CP+ Sbjct: 71 LHNQPPNPACPV 82 >gi|317470881|ref|ZP_07930261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|316901625|gb|EFV23559.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 145 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 18/120 (15%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + ++E +S+ +L KI++ LV AG+V++ G++GG L R I++LDV +A E Sbjct: 25 PVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAGKKGGFVLKRAPKNISLLDVFEAIE 84 Query: 84 ------------ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 + F E +H+ + ++ SV +A A+ L+Q++++ +V Sbjct: 85 STAPFLSTTNLVDKVFPKEKMIAHEKEQQII------SVFTRAEQAYRQSLSQFTLDHVV 138 >gi|269962422|ref|ZP_06176772.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3] gi|269832918|gb|EEZ87027.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3] Length = 155 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAHS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I I V+ A +ES +C K DC C LT L + L++ Sbjct: 61 IAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 102 >gi|83858482|ref|ZP_00952004.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633] gi|83853305|gb|EAP91157.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633] Length = 155 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A + + P + IA IS +L ++ L +AG+V++VRG Sbjct: 1 MKLSTKGRYAVMAMVDLAQASLEKPVPLGDIASRQEISLSYLEQLFAKLRRAGVVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L RP + I D++ A EE V C Sbjct: 61 PGGGYKLARPLGETRIADIMLAVEEPVDVTRC 92 >gi|113475528|ref|YP_721589.1| BadM/Rrf2 family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110166576|gb|ABG51116.1| transcriptional regulator, BadM/Rrf2 family [Trichodesmium erythraeum IMS101] Length = 147 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 6/125 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ ++ P + +IA I +L K+L + + G+V + RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQQSNTPVSVKEIAVRQNIPVAYLEKLLIEMRRGGLVVSFRG 60 Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 +GG +L + QI+ IL+ V T E F ASH D V C + +K Sbjct: 61 AQGGYQLAKLPAQISLGEILESVGETIEPLFKYTPNASHAEDW--VTYCIWHRIHKKLSE 118 Query: 117 AFFDV 121 A +++ Sbjct: 119 ALYNI 123 >gi|262395130|ref|YP_003286984.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25] gi|262338724|gb|ACY52519.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25] Length = 158 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL Sbjct: 1 MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAE 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 A I I V+ A +ES +C K DC C LT L + L++ Sbjct: 61 AHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 105 >gi|118475649|ref|YP_892090.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus subsp. fetus 82-40] gi|118414875|gb|ABK83295.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus subsp. fetus 82-40] Length = 125 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + I++ +S+ +L ++L L AG V +++G +GG L + D+IT D+ A E Sbjct: 14 PVSLKDISQNIGVSKNYLEQVLNTLRNAGFVSSIKGLKGGYFLNKTLDEITFYDIFYALE 73 Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 F + H LT + K L++F + +Q Sbjct: 74 NDFGLTSLNVEHSSYNLFFKEYNEKLTELFSKPLSSFKEYQSQ 116 >gi|148253999|ref|YP_001238584.1| BadM/Rrf2 family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406172|gb|ABQ34678.1| transcriptional regulator, BadM/Rrf2 family [Bradyrhizobium sp. BTAi1] Length = 158 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ L++ A +S IAE IS+ FL IL+ L +AG+V +G Sbjct: 2 LSAKGKYGLKALIHLASLEPGEQALSADIAETNNISKKFLDAILRELRQAGLVRAKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGL---TSVLRKA 114 GG L RPA I + ++ + C + DC +C + + +R A Sbjct: 62 GGYALARPARSIKVGQAIRHLDGPLAPIACASRSAYRPCRDCRDPKACAVRLTMTQVRDA 121 Query: 115 LNAFFDVLTQYSI 127 ++ D +T Y + Sbjct: 122 ISGVLDQMTLYEL 134 >gi|269965159|ref|ZP_06179293.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B] gi|269830145|gb|EEZ84372.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B] Length = 155 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGADAHS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I I V+ A +ES +C K DC C LT L + L++ Sbjct: 61 IAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 102 >gi|284989652|ref|YP_003408206.1| BadM/Rrf2 family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062897|gb|ADB73835.1| transcriptional regulator, BadM/Rrf2 family [Geodermatophilus obscurus DSM 43160] Length = 165 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +IA A I FL IL L A +V + RGR GG RL P +++I V++ E F+ Sbjct: 33 RIAAAQGIPSRFLQSILSDLQHARLVTSQRGREGGYRLALPPAEVSIARVMRV--EQGFL 90 Query: 89 AECFASHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131 AE D G+ L SV A A+ VL Q ++ +V Sbjct: 91 AEVHGQRPEDVEYSGTAVPLASVWVAAREAYRRVLEQVTLADVV 134 >gi|209550103|ref|YP_002282020.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535859|gb|ACI55794.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 162 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 16/128 (12%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +A +V+T G GG RL RP+ + Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARPSSE 73 Query: 73 ITILDVVKATEESFFVAECFASHKI----DCPLVG-----SCGLTSVLRKALNAFFDVLT 123 I LD+V+A E A F I C G C + ++ +A A+ D L Sbjct: 74 INFLDIVEAVEGK---ARSFTCTNIRDNNPCRPAGYCDSKPCAVARIMWEADEAWRDTLR 130 Query: 124 QYSIECLV 131 + + LV Sbjct: 131 RVRLSDLV 138 >gi|89100970|ref|ZP_01173815.1| YrzC [Bacillus sp. NRRL B-14911] gi|89084306|gb|EAR63462.1| YrzC [Bacillus sp. NRRL B-14911] Length = 139 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V ++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPISLKSIAQTNDLSEHYLEQLIAPLRNAGLVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L IT D+++ E Sbjct: 61 AYGGYVLGHEPADITSGDIIRVLE 84 >gi|317128228|ref|YP_004094510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Bacillus cellulosilyticus DSM 2522] gi|315473176|gb|ADU29779.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cellulosilyticus DSM 2522] Length = 139 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IA +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKYGEGPISLKSIAIDHDLSEHYLEQLIAPLRNATLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L + +QIT D+++ E Sbjct: 61 AYGGYMLSKSPEQITAGDIIRVLE 84 >gi|67459239|ref|YP_246863.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia felis URRWXCal2] gi|67004772|gb|AAY61698.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia felis URRWXCal2] Length = 139 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + +L A + P +++I+ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMAAKSSAEPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 +GG L ++I I D++ A E+F + C+ Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCY 93 >gi|260773391|ref|ZP_05882307.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14] gi|260612530|gb|EEX37733.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14] Length = 160 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I+E IS +L ++ L KAG+V +VRG GG RL A I+I V+ A + Sbjct: 12 PVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASTISIGTVIAAVD 71 Query: 84 ESFFVAECFASHKIDC 99 ES +C K DC Sbjct: 72 ESVDATKCHG--KGDC 85 >gi|167748622|ref|ZP_02420749.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662] gi|167651936|gb|EDR96065.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662] Length = 145 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 18/120 (15%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + ++E +S+ +L KI++ LV AG+V++ G++GG L R I++LDV +A E Sbjct: 25 PVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAGKKGGFVLKRAPKNISLLDVFEAIE 84 Query: 84 ------------ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 + F E +H+ + ++ SV +A A+ L+Q++++ +V Sbjct: 85 STAPFLSTTNLVDKVFPKEKMIAHEKEQQII------SVFTRAEQAYRQSLSQFTLDHVV 138 >gi|304311801|ref|YP_003811399.1| Regulator of the isc operon [gamma proteobacterium HdN1] gi|301797534|emb|CBL45754.1| Regulator of the isc operon [gamma proteobacterium HdN1] Length = 166 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P +++I+E IS +L ++ + + +V++VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHTGKGPVSLAEISERQGISISYLEQLFAKMRRKDLVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L R I + +++ A +ES C DC +C LT L + L+ Sbjct: 61 PGGGYLLSRDGSTICVAEIIDAVDESVDATRCQGLG--DCQNGETC-LTHDLWQELSIEI 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 L S++ LV +RS I++I Sbjct: 118 HRFLGGISLKSLV-SRSQIQQI 138 >gi|284034151|ref|YP_003384082.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813444|gb|ADB35283.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM 17836] Length = 158 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA---TEESF 86 +L K LQ L +AGI+ + G +GG +L RP D+IT+LD+V A +E+F Sbjct: 38 YLNKQLQALTRAGILSSTSGPKGGFQLARPTDRITLLDIVVAIDGPDEAF 87 >gi|154484576|ref|ZP_02027024.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC 27560] gi|149734424|gb|EDM50341.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC 27560] Length = 151 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +RV++ A ND + +S +AE IS +L I+ L K +V++ R Sbjct: 16 MMISTKGRYALRVMIDLA-QNDGESFVSLKDVAERQGISMKYLEMIVSLLHKGHMVKSQR 74 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L + + TI ++K TE + C C C + +K + Sbjct: 75 GKAGGYKLVKKPAEYTIGSILKLTEGTLAPVGCLEEGAEKCDRATECITLPLWKKLDDQI 134 Query: 119 FDVLTQYSIECLVRNR 134 + L ++E LV R Sbjct: 135 DEYLESVTLEDLVEGR 150 >gi|114705805|ref|ZP_01438708.1| RrF2 family protein [Fulvimarina pelagi HTCC2506] gi|114538651|gb|EAU41772.1| RrF2 family protein [Fulvimarina pelagi HTCC2506] Length = 138 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++R Y IR + A P + IAE I + FL IL L +AG + + RG+ G Sbjct: 2 ISQRARYAIRAVFNVA-DRSTPVSAAVIAEEEAIPKKFLEAILADLKQAGFLASSRGKNG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNAF 118 G L P +I+ D+++ + +A C + DC V +C L + +A Sbjct: 61 GYLLALPPAEISFADILRVIDGPLALAPCASRTAYRRCADCKDVETCETRKALLRVRDAT 120 Query: 119 FDVL 122 ++L Sbjct: 121 AEIL 124 >gi|307543983|ref|YP_003896462.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halomonas elongata DSM 2581] gi|307216007|emb|CBV41277.1| transcriptional regulator, BadM/Rrf2 family [Halomonas elongata DSM 2581] Length = 183 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ IA+ IS +L ++ L + G+V++VRG Sbjct: 29 MRLTTKGRYAVTAMLDLAMHADEGPICLADIAKRQEISLSYLEQLFARLRRRGLVDSVRG 88 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L + I++ V+ A +ES C DC +C L + L + ++ Sbjct: 89 PGGGYLLTLSPEAISVAQVIDAVDESVDATRCGG--MSDCQQGDTCLTHHLWNELSEQIH 146 Query: 117 AFFDVLT 123 F D +T Sbjct: 147 GFLDGVT 153 >gi|89068825|ref|ZP_01156208.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola granulosus HTCC2516] gi|89045595|gb|EAR51658.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola granulosus HTCC2516] Length = 143 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + +++ IS +L ++ L +AG+VE+VRG GG RL RPA +I + DV+ A +E+ Sbjct: 18 LGEVSRRQDISLPYLEQLFVKLRRAGLVESVRGPGGGYRLARPASEIRVADVLGAVDET 76 >gi|329945233|ref|ZP_08293064.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon 170 str. F0386] gi|328529276|gb|EGF56197.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon 170 str. F0386] Length = 165 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K ++ L+ + + +A +S +L K LQ L AGIV +V G Sbjct: 1 MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG RL +PA ++++ DVV A + + +C F K G C + + Sbjct: 61 SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFVDQKSRILASGLCSINRAMS 120 Query: 113 KALNAFFDVLTQYSIECLV 131 A +A+ L SI L Sbjct: 121 LAEDAWRASLAGTSIADLA 139 >gi|258541842|ref|YP_003187275.1| BadM/Rrf2 family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632920|dbj|BAH98895.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01] gi|256635977|dbj|BAI01946.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-03] gi|256639032|dbj|BAI04994.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-07] gi|256642086|dbj|BAI08041.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-22] gi|256645141|dbj|BAI11089.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-26] gi|256648196|dbj|BAI14137.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-32] gi|256651249|dbj|BAI17183.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654240|dbj|BAI20167.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-12] Length = 149 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 13 VLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++ A H +S IAE ++ + +LQ L ++G++E++RG RGG RL RP Sbjct: 14 IMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLGRPR 73 Query: 71 DQITILDVVKA 81 I+++D+++A Sbjct: 74 RDISLVDIIEA 84 >gi|302877884|ref|YP_003846448.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302580673|gb|ADL54684.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 151 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ P ++ I+E IS +L ++ L ++ +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMVDLAMNGGRGPVTLASISERQKISLSYLEQLFGKLRRSNLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L + A +I I ++V A +E C + K DC C LT L LN Sbjct: 61 PGGGYYLAKTATKIKIAEIVVAVDEPLDATYC--AEKGDCRDGQPC-LTHNLWMGLNERI 117 Query: 119 FDVLTQYSIECLVRNRS 135 + L +++ LV +S Sbjct: 118 YSYLDSINLQQLVEGQS 134 >gi|254476324|ref|ZP_05089710.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] gi|214030567|gb|EEB71402.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] Length = 142 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + I++ IS +L ++ L +AG+V++VRG GG RL RPA +I ++DV+ A +E+ Sbjct: 18 LGDISKRQDISLPYLEQLFVKLRRAGLVDSVRGPGGGYRLARPASEIRVVDVLGAVDET 76 >gi|226946079|ref|YP_002801152.1| Iron-sulfur cluster assembly transcription factor IscR [Azotobacter vinelandii DJ] gi|6137265|sp|O69219|YOR2_AZOVI RecName: Full=Putative HTH-type transcriptional regulator ORF2 gi|3046321|gb|AAC24480.1| unknown [Azotobacter vinelandii] gi|226721006|gb|ACO80177.1| Iron-sulphur cluster assembly transcription factor IscR [Azotobacter vinelandii DJ] Length = 164 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRNSLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + +V+ A ES V C Sbjct: 61 PGGGYQLSRSMAAIQVAEVIDAVNESVDVTRC 92 >gi|294506739|ref|YP_003570797.1| transcriptional regulator [Salinibacter ruber M8] gi|294343067|emb|CBH23845.1| Transcriptional regulator [Salinibacter ruber M8] Length = 162 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 13/104 (12%) Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNR----ISQIAEACCISELFLFKILQP 47 M L+K +YG+R ++Y + P R I I++ I FL K+ Q Sbjct: 1 MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 60 Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 L AG++ + RG GGV L R D I++ ++V A + + EC Sbjct: 61 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEEC 104 >gi|292669316|ref|ZP_06602742.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC 43541] gi|292649157|gb|EFF67129.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC 43541] Length = 147 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L+ +++ D P +A + + + + +IL L +AG++ RG Sbjct: 1 MQISSRFTIAIHILICVDLYSADAPATSESLAGSIGVHPVVIRRILGQLRRAGLITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 R GG + RP +IT+ D+ +A ES F+ H+ P Sbjct: 61 REGGAHIVRPLGEITLADIFRAV-ESIGSDTLFSFHENPNP 100 >gi|257468365|ref|ZP_05632459.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317062638|ref|ZP_07927123.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313688314|gb|EFS25149.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 144 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ T+ I+ ++Y + + + I ++ S+ F+ K+L+PL A IV RG Sbjct: 1 MKITQETNCAIKTILYLSTLQKGEISPAKTIGKSIGFSDKFVLKVLRPLTSANIVLPFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + D+IT+ DV+ A + Sbjct: 61 VTGGYCLGKTTDKITLFDVIVAVQND 86 >gi|254509783|ref|ZP_05121850.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] gi|221533494|gb|EEE36482.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] Length = 134 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 9/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D S IA+ + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGKLREAGLLTSEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RP I++ DV A +E ++ + + P +C + L+K ++ + Sbjct: 61 AGGWRLARPPQNISLADVYLALDERLVASDEIS----EAP---ACSVEHALQKRVSGVLE 113 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 + Q ++ L +SI ++ A Sbjct: 114 EIEQSLVQKL--GETSISEVRGA 134 >gi|76666808|emb|CAJ31186.1| Transcriptional regulator [uncultured sulfate-reducing bacterium] Length = 182 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ R Y +R+++ A H + N + SQ++ IS +L +++ L A ++ Sbjct: 22 MKLSTRARYALRLMVTLARHTNGDNSVVSLSQVSREAKISRRYLEQLVIGLKNASLIRGR 81 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 G+ GG L PADQI I ++++ + EC +I Sbjct: 82 SGKGGGYCLALPADQIRIRQIIESAIGPINIVECVMQPEI 121 >gi|315650361|ref|ZP_07903433.1| transcription regulator [Eubacterium saburreum DSM 3986] gi|315487472|gb|EFU77782.1| transcription regulator [Eubacterium saburreum DSM 3986] Length = 139 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 49/95 (51%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 IA+ ISE +L I++ LVK ++ +RG+ GG +L + IT+ +V++ EE+ + Sbjct: 30 DIAKRQDISEKYLESIIKLLVKNKLLVGLRGKGGGYKLTKRPSDITVGEVLRIAEENIMI 89 Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 E + + S L K +N +FD ++ Sbjct: 90 DEEDTESMYRTSEYRTIDMWSKLSKMINDYFDSIS 124 >gi|296170194|ref|ZP_06851788.1| Rrf2 family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895146|gb|EFG74863.1| Rrf2 family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 159 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + +Y +R ++ A + + + +A+A I FL IL L +V + RGR Sbjct: 1 MSAKAEYAVRAMVQLATVPHGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFD 120 GG L RP D+I+I DV++ + D P G + LT V R + Sbjct: 61 GGYELARPGDEISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASMRS 118 Query: 121 VLTQYSIECLVRN 133 VL + ++ + N Sbjct: 119 VLEETTLADVAAN 131 >gi|282901029|ref|ZP_06308962.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] gi|281194120|gb|EFA69084.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] Length = 160 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 5/109 (4%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I+ IA I E +L +IL L +AG+V++ RG +GG L R +I++L++V S Sbjct: 46 INDIAAKQPIPERYLEQILTQLRRAGVVQSQRGSKGGFLLVREPWEISLLEIV-----SL 100 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 E + + + + +A A +VL +Y+++ L + R Sbjct: 101 IEGERNEKRNANVLTIEKTLVWEIWERANTASVEVLGRYTLQDLCQERE 149 >gi|222055077|ref|YP_002537439.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221564366|gb|ACM20338.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 141 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ A+++ P + +IA+ I +L ++ L GIV ++RG Sbjct: 1 MRLSTRAQYAVRAMVDLALYSTSKPVSLKEIAQREEIPLSYLEQLFFRLKNGGIVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L R + I + ++V EE C C + C + L + + Sbjct: 61 PGGGYILARESSLIKVGEIVVTVEEPLSPVACMDEGSTGCSRISQCVTHNIWKGLGEKIR 120 Query: 117 AFFDVLT 123 F D +T Sbjct: 121 GFLDGIT 127 >gi|269926805|ref|YP_003323428.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] gi|269790465|gb|ACZ42606.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] Length = 178 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 6 RTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 R +YG+R++M A + P ++++AE + +L +++ L + G+V + RG +GG Sbjct: 12 RAEYGVRLMMMLAREYGKGPLSLARVAEEELLPLPYLEQLIANLRRDGLVVSHRGAKGGY 71 Query: 65 RLCRPADQITILDVVKATE 83 L +P ++IT+ +++++ E Sbjct: 72 ELAKPPEEITMGEIIRSLE 90 >gi|225848837|ref|YP_002729001.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643212|gb|ACN98262.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 142 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 11 IRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 IR L+Y A++ D + +I+EA + FL K +Q LVK GI+E+ RG +GG+ +P Sbjct: 10 IRALIYLALNQDKEYISVKEISEALNLPFFFLAKNIQKLVKEGILESYRGPKGGISFKKP 69 >gi|163857206|ref|YP_001631504.1| putative transcriptional regulator [Bordetella petrii DSM 12804] gi|163260934|emb|CAP43236.1| putative transcriptional regulator [Bordetella petrii] Length = 160 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +++ ++ + L + ND + +++A A + +L K LQ LVKAGI+ + Sbjct: 1 MKMSEGVEWALHCCLTLAWLDNDGASVPTARLAAAFELPPAYLNKCLQLLVKAGILVSTA 60 Query: 59 GRRGGVRLCRPADQITILDVVKA---TEESFFVAEC----FASHKIDCPLVGSCGLTSVL 111 G +GG RL R +IT+LDVV A E +F AE + V CG+ + Sbjct: 61 GVKGGFRLARAPARITLLDVVTAIEGPEGAFRCAEIRQRGAGASASPREFVRPCGIAVAM 120 Query: 112 RKALNAFFDVLTQYSIECLV 131 R+A A+ L ++ L+ Sbjct: 121 RRAETAWRRELAAQTVADLL 140 >gi|317471927|ref|ZP_07931261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|316900593|gb|EFV22573.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 145 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A HN + +++ IS +L +I++ L G ++++RG Sbjct: 1 MKISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 RGG +L + + TI DV++ TE S C C C GL V+R Sbjct: 61 PRGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVR 120 Query: 113 KALNA 117 L + Sbjct: 121 DYLGS 125 >gi|42526191|ref|NP_971289.1| hypothetical protein TDE0676 [Treponema denticola ATCC 35405] gi|41816303|gb|AAS11170.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 139 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 I+ + ++ + + KIL L KAG+VET G GG L + AD+IT+LDV A E Sbjct: 31 ISASTGVNAVIIRKILLQLQKAGLVETAAGV-GGSHLAQTADKITLLDVYNAINEGDEER 89 Query: 90 ECFASH---KIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + F H CP VG L L A NA D L++ +I L ++ Sbjct: 90 DIFNFHPKPNPKCP-VGRKIHLVLDDKLDDAQNAMKDSLSKTTIADLSKD 138 >gi|309789575|ref|ZP_07684156.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] gi|308228311|gb|EFO81958.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] Length = 146 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DYG+R L A + + P + +IA I +L ++L + +AG++E++RG Sbjct: 1 MRISSKGDYGLRALFDLAQRYGEGPVQSEEIAIRQGIPVNYLNQLLITMRRAGLIESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L R + IT+ D + E AE Sbjct: 61 PQGGHMLARSPETITLRDAIIVLEGPLLPAEA 92 >gi|113867763|ref|YP_726252.1| putative transcriptional regulator [Ralstonia eutropha H16] gi|113526539|emb|CAJ92884.1| putative transcriptional regulator [Ralstonia eutropha H16] Length = 185 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + +AE + FL K+ L KA +V G +GG RL RPA+ IT+ DVV A + Sbjct: 30 VRDLAELQGVPHDFLAKLFTKLAKAKLVVATEGIKGGFRLARPANHITVHDVVVAIDGEK 89 Query: 87 FVAECF------ASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 + +C A D P G C + +V++ A A L ++++ L Sbjct: 90 PLFDCLEIRGRCAVFNDDAPGWATRGVCSIQAVMQAAEKAMRAELKRHTLADL 142 >gi|28868629|ref|NP_791248.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971530|ref|ZP_03399641.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1] gi|301386135|ref|ZP_07234553.1| rrf2 family protein [Pseudomonas syringae pv. tomato Max13] gi|302060165|ref|ZP_07251706.1| rrf2 family protein [Pseudomonas syringae pv. tomato K40] gi|302135108|ref|ZP_07261098.1| rrf2 family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851867|gb|AAO54943.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923722|gb|EEB57306.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1] gi|330872891|gb|EGH07040.1| rrf2 family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965903|gb|EGH66163.1| rrf2 family protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331019392|gb|EGH99448.1| rrf2 family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 163 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + VV A ES C Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92 >gi|330957514|gb|EGH57774.1| rrf2 family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 163 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + VV A ES C Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92 >gi|330466620|ref|YP_004404363.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809591|gb|AEB43763.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora maris AB-18-032] Length = 151 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 24/144 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R DY +R + A YP +S I+ + FL +L L +AG+V R Sbjct: 1 MQISARGDYAVRAALSLAAA--YPALLSTQTISAEQDMPRKFLEAVLADLRRAGVVRAQR 58 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L RP ++T+ V++A ++ PL G GL + Sbjct: 59 GAEGGYALARPPREVTVGAVLRA---------------VEGPLAGVRGL-----RPEETS 98 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 ++ + Q+ V R+S++++ + Sbjct: 99 YEGVAQHLPGFWVAVRASLRRVVD 122 >gi|297191372|ref|ZP_06908770.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720618|gb|EDY64526.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 160 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + + P +++AE +S +L K LQ L +AG+V +V+G+ GG L Sbjct: 6 GVEWALHCCVVLTSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGKAGGYVL 65 Query: 67 CRPADQITILDVVKATE 83 R IT+LDVV+A + Sbjct: 66 TREPASITVLDVVEAVD 82 >gi|304407103|ref|ZP_07388757.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304344090|gb|EFM09930.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 143 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 29/42 (69%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 L KIL L +A ++ET GR GG RL RPA+QIT+ +V +A Sbjct: 47 LLRKILATLARASLIETREGRDGGYRLLRPAEQITLAEVYQA 88 >gi|225025112|ref|ZP_03714304.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC 23834] gi|224942073|gb|EEG23282.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC 23834] Length = 173 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P ++ I+ IS +L ++ L +AG+VE+VRG Sbjct: 22 MRLTTKGRFAVTAMLDLALYGRENPVSLNAISGRQNISLSYLEQLFGKLRRAGLVESVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG L R I I +++ A E+ C + +C C LT L ++LN Sbjct: 82 PGGGYLLSRQPGSINIAEIIYAAEDKLDATRCGG--QTNCHKGAPC-LTHDLWESLN 135 >gi|194017204|ref|ZP_03055816.1| YrzC [Bacillus pumilus ATCC 7061] gi|194011072|gb|EDW20642.1| YrzC [Bacillus pumilus ATCC 7061] Length = 164 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL A +V+++RG Sbjct: 26 LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 85 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L ++IT D+++ E Sbjct: 86 AYGGYVLAHEPNEITAGDIIRVLE 109 >gi|218516163|ref|ZP_03513003.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 123 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 >gi|312868528|ref|ZP_07728728.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis F0405] gi|311096273|gb|EFQ54517.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis F0405] Length = 147 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ + S +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG L + AD+I++LD+ +A E + F H P Sbjct: 61 T-GGAELAKAADEISLLDIYQAVECLGSTGQLFGFHDNPNP 100 >gi|326203774|ref|ZP_08193637.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] gi|325986214|gb|EGD47047.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] Length = 148 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 4/90 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + YGI ++ A + D+ IS I+E IS+++L ++ L ++ +V ++ Sbjct: 1 MRISSKGRYGIASMICVAQLGRNGDFVTVIS-ISEKLGISKIYLEQVFSLLKRSKLVSSI 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFF 87 +G +GG +L + ++IT D+++A E S F Sbjct: 60 KGSQGGYQLTKSPEKITAYDILQAVEISLF 89 >gi|222084808|ref|YP_002543337.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722256|gb|ACM25412.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 166 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + IAE +S +L K LQ L AGI++TV G +GG RL R I++LD+V A E Sbjct: 29 AAIAEFHGVSVSYLLKHLQALSGAGILDTVPGPKGGYRLARLPKDISLLDIVLAVE 84 >gi|198282957|ref|YP_002219278.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666431|ref|YP_002425160.1| iron-sulfur cluster assembly transcription factor IscR [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247478|gb|ACH83071.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518644|gb|ACK79230.1| iron-sulfur cluster assembly transcription factor IscR [Acidithiobacillus ferrooxidans ATCC 23270] Length = 162 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ ++ I++ IS +L ++ L + G+VE+VRG Sbjct: 1 MKLTTKGRYAVTAMLDLALNQRGGVVTVADISQRQQISVAYLEQLFGRLRRFGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 GG RL P +I + +V+A ES +C + C G LT L + L N Sbjct: 61 PGGGYRLAMPDSEIPLTRIVEAVNESISTTQCGGDPHLCCKGDGQQCLTHDLWEELGNRI 120 Query: 119 FDVLTQYSIECLVRNR 134 + L ++ LV+ + Sbjct: 121 AEFLGGITLGQLVQKQ 136 >gi|66044484|ref|YP_234325.1| transcription factor IscR [Pseudomonas syringae pv. syringae B728a] gi|71736670|ref|YP_273566.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487211|ref|ZP_05641252.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626165|ref|ZP_06459119.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649071|ref|ZP_06480414.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aesculi str. 2250] gi|289677962|ref|ZP_06498852.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. syringae FF5] gi|298486011|ref|ZP_07004085.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185757|ref|ZP_07262430.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. syringae 642] gi|63255191|gb|AAY36287.1| Protein of unknown function UPF0074:Iron-sulphur cluster assembly transcription factor IscR [Pseudomonas syringae pv. syringae B728a] gi|71557223|gb|AAZ36434.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159488|gb|EFI00535.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322933|gb|EFW79023.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. glycinea str. B076] gi|320329944|gb|EFW85932.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. glycinea str. race 4] gi|330869589|gb|EGH04298.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874670|gb|EGH08819.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. glycinea str. race 4] gi|330894481|gb|EGH27142.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. mori str. 301020] gi|330895877|gb|EGH28162.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936997|gb|EGH41093.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. pisi str. 1704B] gi|330950800|gb|EGH51060.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae Cit 7] gi|330969082|gb|EGH69148.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975891|gb|EGH75957.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330985002|gb|EGH83105.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009174|gb|EGH89230.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 163 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + VV A ES C Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92 >gi|91976008|ref|YP_568667.1| hypothetical protein RPD_1529 [Rhodopseudomonas palustris BisB5] gi|91682464|gb|ABE38766.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisB5] Length = 154 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 49/94 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A H D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAKKYDISLNHLAKVLRTLVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GG ++T+LD++ E++ ++ AS Sbjct: 61 GGGYTFSGNPKRVTLLDIIALFEDTAPASDLTAS 94 >gi|306838497|ref|ZP_07471336.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] gi|306406418|gb|EFM62658.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] Length = 199 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 58 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 117 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA++I I ++++A + + C Sbjct: 118 GGFCLAHPANEIAIGNIIRALDGALAPIAC 147 >gi|159901882|gb|ABX10616.1| transcriptional regulator [uncultured planctomycete 6N14] Length = 141 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y ++ AI ND P I +I + + FL +IL+ L G V+++R Sbjct: 1 MVISARVHYACVAMLELAIQNDEGSPVAIREITDRHGVPGPFLVQILRSLRALGWVQSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKA 81 G +GG RL IT+LD+ +A Sbjct: 61 GSQGGYRLSVDPATITLLDIAEA 83 >gi|117926820|ref|YP_867437.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1] gi|117610576|gb|ABK46031.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp. MC-1] Length = 141 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 61/109 (55%), Gaps = 2/109 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L++ TDYG V+M+ A + + S+IA+ + E + K+L+ +V+A ++ +VRG Sbjct: 2 LRLSRMTDYGTLVMMHMAKAPERVHSASEIAQHTKLPEPSVRKVLKIMVRAELLCSVRGL 61 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKID-CPLVGSCGL 107 +GG RL + +I++ ++ A E + + +C + D C +C + Sbjct: 62 KGGYRLAKLPLEISLEALITALEGTAVAITDCCDDEQTDHCEQFDACHM 110 >gi|163857090|ref|YP_001631388.1| hypothetical protein Bpet2778 [Bordetella petrii DSM 12804] gi|163260818|emb|CAP43120.1| unnamed protein product [Bordetella petrii] Length = 179 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN- 116 GG L R A +T+ D++ A +E C H G G +T L LN Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATNCGGKHDCTSGKDGKSGKCMTHELWTTLNR 120 Query: 117 AFFDVLTQYSIECLV 131 D L S++ LV Sbjct: 121 KMVDYLDSVSLQDLV 135 >gi|295702703|ref|YP_003595778.1| Rrf2 family transcriptional regulator [Bacillus megaterium DSM 319] gi|294800362|gb|ADF37428.1| transcriptional regulator, Rrf2 family [Bacillus megaterium DSM 319] Length = 143 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 13/141 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + + +P+ IA + + + + +++ L KAG+V V+ Sbjct: 1 MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLV-GVKAG 59 Query: 61 RGGVRLCRPADQITILDV---VKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLR 112 GG L + ++IT+LDV V A EE E F H+ ++CP+ + L +L+ Sbjct: 60 AGGAYLLKDLEEITLLDVYRAVAAVEE----GELFQMHENPNVECPVGANIQSVLELILK 115 Query: 113 KALNAFFDVLTQYSIECLVRN 133 ++ +A VL +++ LV + Sbjct: 116 RSQDAMEQVLADVTMKELVTD 136 >gi|255522661|ref|ZP_05389898.1| hypothetical protein LmonocFSL_15876 [Listeria monocytogenes FSL J1-175] Length = 114 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA+ +SE +L +++ PL AGIV+++RG GG L ++IT D+++ E + Sbjct: 5 IAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGPIVLV 64 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 E + + + NA DVL Q ++ L+++ + Sbjct: 65 ESMEDEE--------AAQRELWTRMRNAVRDVLDQTTLADLLKHSTD 103 >gi|294497330|ref|YP_003561030.1| Rrf2 family transcriptional regulator [Bacillus megaterium QM B1551] gi|294347267|gb|ADE67596.1| transcriptional regulator, Rrf2 family [Bacillus megaterium QM B1551] Length = 143 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 13/141 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + + +P+ IA + + + + +++ L KAG+V V+ Sbjct: 1 MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLV-GVKAG 59 Query: 61 RGGVRLCRPADQITILDV---VKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLR 112 GG L + ++IT+LDV V A EE E F H+ ++CP+ + L +L+ Sbjct: 60 AGGAYLLKDLEEITLLDVYRAVAAVEE----GELFQMHENPNVECPVGANIQSVLELILK 115 Query: 113 KALNAFFDVLTQYSIECLVRN 133 ++ +A VL +++ LV + Sbjct: 116 RSQDAMEQVLADVTMKELVTD 136 >gi|162454023|ref|YP_001616390.1| rrf2 family protein [Sorangium cellulosum 'So ce 56'] gi|161164605|emb|CAN95910.1| rrf2 family protein [Sorangium cellulosum 'So ce 56'] Length = 148 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 9/84 (10%) Query: 27 ISQIAEACCISEL---------FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++Q E+C L FL +IL L +AG++E GR GG RL RPA +I + + Sbjct: 16 LAQADESCASDALSASINTNPAFLRRILARLSQAGLIEAREGRSGGYRLARPAKKIRLSE 75 Query: 78 VVKATEESFFVAECFASHKIDCPL 101 V A E +A CP+ Sbjct: 76 VYAAVEPEGAIAPSPCEPNARCPI 99 >gi|51102912|gb|AAT96061.1| rrf2 family protein [Pseudomonas viridiflava] Length = 163 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + VV A ES C Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92 >gi|260888343|ref|ZP_05899606.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185] gi|330838337|ref|YP_004412917.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] gi|260861879|gb|EEX76379.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185] gi|329746101|gb|AEB99457.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] Length = 148 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ + + A + P I I+E IS+++L ++ L A +V + + Sbjct: 1 MKISAKGRYGLAAMAFLARIGQANSPTTILTISENLGISKIYLEQVFSLLKHARLVTSSK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G +GG L R A +IT DV+ A E Sbjct: 61 GSQGGYHLARAAQEITAWDVLAAIE 85 >gi|302339438|ref|YP_003804644.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta smaragdinae DSM 11293] gi|301636623|gb|ADK82050.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta smaragdinae DSM 11293] Length = 145 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+Y D ++ +I+EA +S+ +L +I++ L +GI+++ RG Sbjct: 1 MKFSTRTRYGLRFLIYLGSEGGDRYVQLGEISEAEKVSQKYLEQIVRLLKPSGILDSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG ++ D++ + + + E C + C C + + + Sbjct: 61 VTGGYKIAVDPDKVRLDRLFELLEGDLAPINCLREDE-HCERASRCPTLPLWMELDDLVK 119 Query: 120 DVLTQYSIECLVRN 133 + L + S+ L+RN Sbjct: 120 NFLKERSLGDLIRN 133 >gi|116618835|ref|YP_819206.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097682|gb|ABJ62833.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 139 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 12/119 (10%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D I +L Y I+ +QIA++ + + + +I+ L G + + GR Sbjct: 5 TKLSD-AIHILTYIVINQGTDLSSTQIAKSVNSNPVVIRRIMSQLKNDGCLLSSNGR-AD 62 Query: 64 VRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +L RPAD I++LD+ +A EE SF KID +C + S ++ L+ +++ Sbjct: 63 PKLARPADTISLLDIYRAVEEDTSFL--------KIDTKTNQNCNVGSHIQTTLDKYYN 113 >gi|299068911|emb|CBJ40152.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum CMR15] Length = 148 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG V + G Sbjct: 6 MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L RPAD+IT+LDV +A E +A ++ C Sbjct: 65 SGGSTLARPADRITLLDVFRAVESPVLIALPYSQPNPAC 103 >gi|170076761|ref|YP_001733399.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7002] gi|169884430|gb|ACA98143.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7002] Length = 147 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA+ + +L K+L + +AGI+ +VRG Sbjct: 1 MKLTTRGHYSVKALLDISLQPGYGPTSVKAIAKRQNLPAPYLEKLLIEMRRAGILRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 +GG +L + I++ +++A E+ Sbjct: 61 AQGGYQLLSKPEDISLGQILQAIGET 86 >gi|227818808|ref|YP_002822779.1| transcriptional regulator [Sinorhizobium fredii NGR234] gi|36959063|gb|AAQ87488.1| RRF2 family protein [Sinorhizobium fredii NGR234] gi|227337807|gb|ACP22026.1| predicted transcriptional regulator [Sinorhizobium fredii NGR234] Length = 179 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 12/148 (8%) Query: 2 HLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 H++ +Y + L+Y A P +AE + F+ K+ L K+GIV G Sbjct: 3 HVSAGVEYALHCLLYLIDAEELGQPASARDLAELQKVPAEFVAKLFTKLQKSGIVVAREG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110 GG L RPA IT LDV++A + + EC F + G C + +V Sbjct: 63 IGGGFALARPATDITALDVIEAVDGRKALFECKEIRAQCALFGDRTPVWAMDGVCSIHAV 122 Query: 111 LRKALNAFFDVLTQYSIECLVRNRSSIK 138 + +A +VL +++ + R++ K Sbjct: 123 MIEAEKRTREVLAGHTLASIA-GRAAAK 149 >gi|84686207|ref|ZP_01014102.1| hypothetical protein 1099457000256_RB2654_08387 [Maritimibacter alkaliphilus HTCC2654] gi|84665734|gb|EAQ12209.1| hypothetical protein RB2654_08387 [Rhodobacterales bacterium HTCC2654] Length = 144 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ +H +D P +I + + + + L AGIV +V+G G Sbjct: 2 RTDNRLSRVLHALLHLERHDGPATSDEIGRMLNTNATVVRRTMGGLRDAGIVGSVKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G L RP DQIT+L + A E A A C L + + L KAL+ Sbjct: 62 GWTLARPLDQITMLTIYDALGEPSLFALGQAQDAPGCRLEQAA--NTALGKALDG 114 >gi|296876096|ref|ZP_06900150.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432807|gb|EFH18600.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 149 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ + S +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG L + AD+I++LD+ +A E + F H P Sbjct: 61 T-GGAELAKAADKISLLDIYQAVECLGSTGQLFGFHDNPNP 100 >gi|284032632|ref|YP_003382563.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811925|gb|ADB33764.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM 17836] Length = 159 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 6/88 (6%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVE 55 M ++ ++DY +R L+ + ND P+ +S +++ A I FL IL L +AG++ Sbjct: 1 MRVSAKSDYALRALIEITQRWVAND-PSVVSAEELSRAQGIPHGFLQGILADLRRAGVLS 59 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATE 83 + RG+ GG +L ++I++ DV++A + Sbjct: 60 SQRGQSGGWKLAVDPNEISVADVMRAVD 87 >gi|162147274|ref|YP_001601735.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209544320|ref|YP_002276549.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785851|emb|CAP55422.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531997|gb|ACI51934.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 149 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 15/130 (11%) Query: 13 VLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++ A H +S IAE ++ + +LQ L ++ ++E+VRG RGG RL RP Sbjct: 14 IMLDVAFHAGRSGTVSAADIAERAGLARRGIEPLLQTLSRSSLLESVRGPRGGYRLGRPR 73 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT----QYS 126 IT+ D+V+ +A S D P VG+ T V+ D L+ + + Sbjct: 74 RDITLADIVE-------IATADDSSSDDGP-VGAL-FTKVIEPCWQKLDDTLSTQCRKLT 124 Query: 127 IECLVRNRSS 136 ++ LVR S Sbjct: 125 LDDLVRRAES 134 >gi|198284817|ref|YP_002221138.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667768|ref|YP_002427503.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249338|gb|ACH84931.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519981|gb|ACK80567.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 146 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y +R L+Y A + P I++ S + K+L+ L K GI+ +V+G Sbjct: 1 MMLSKASEYALRSLIYLAAQPSGRPVLSRDISDYIGGSAPCVTKVLRCLAKRGILYSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 + GG L A+ + I+DV++ TE C H DC Sbjct: 61 KGGGYMLRPGAESLNIIDVIEITEGRPLEIRCILGH--DC 98 >gi|254467026|ref|ZP_05080437.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales bacterium Y4I] gi|206687934|gb|EDZ48416.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales bacterium Y4I] Length = 142 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + I++ IS +L ++ L ++G+VE+VRG GG RL +PA +I I+DV+ A +E+ Sbjct: 18 LGDISKRQDISLPYLEQLFVKLRRSGLVESVRGPGGGYRLAKPASEIRIVDVLSAVDET 76 >gi|149178219|ref|ZP_01856813.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797] gi|148843001|gb|EDL57370.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797] Length = 149 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 15/135 (11%) Query: 9 YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 Y +R + A DY R Q+++A + +L KI+ L + G++ + RG+ GG L Sbjct: 16 YALRAMTCLAFRFPDYMTR-DQLSQAAEVPHAYLPKIMLELNRTGLIRSQRGQNGGYALI 74 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 +I++LDV+K+ + F + H+ D + L + LN F +L + S+ Sbjct: 75 PSPQEISLLDVIKSVKAGF--QRELSQHRPD-----TSNEVRQLDEHLNHTFSLL-ETSL 126 Query: 128 ECLVRNRSSIKKIFN 142 E ++S+ IFN Sbjct: 127 E-----QTSLADIFN 136 >gi|254303299|ref|ZP_04970657.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323491|gb|EDK88741.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 140 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y ++ D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIIYYLTLNRD-KDIISSNEISAEEDIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 60 GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCTIRHALKKIQDDL 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D + + LV N +S++ Sbjct: 120 LDDFDKINFYDLVENNASLQ 139 >gi|171057733|ref|YP_001790082.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775178|gb|ACB33317.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii SP-6] Length = 177 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALREHTGPVALAAISARQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L R A+ IT+ D++ A +E+ C G C +T L +LNA Sbjct: 61 PGGGYSLGRKAEDITVADIIVAVDEAIDSTGCGGGENCMGDDTGRC-MTHDLWTSLNAKM 119 Query: 119 FDVLTQYSIECLVRNRSS 136 + L S+ LV+++ S Sbjct: 120 LEYLHSISLRSLVQDQLS 137 >gi|154498777|ref|ZP_02037155.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC 29799] gi|150272167|gb|EDM99371.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC 29799] Length = 144 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI D + +AE IS+ +L +I+ L + G+V +VRG Sbjct: 1 MKISTKGRYALRLMLDLAIQPGDSAVPLRDVAERQEISDKYLEQIVTQLARGGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ++ T+ ++++ E + C + C C V ++ +A Sbjct: 61 AGGGYLLTRTPEEYTVGEILRQLEGNLAPVSCVSGGSC-CGRADRCVTLEVWQQIQDAVD 119 Query: 120 DVLTQYSIECLVR 132 V+ ++ LV+ Sbjct: 120 GVVDNITLADLVK 132 >gi|316935429|ref|YP_004110411.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603143|gb|ADU45678.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris DX-1] Length = 154 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 1 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRTLVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++T+LD++ E++ + AS + + S L VLR Sbjct: 61 GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDEHEE----SRALHKVLRDIDEIAMT 116 Query: 121 VLTQYSIECLVR 132 L SI L++ Sbjct: 117 TLRSVSITSLLK 128 >gi|303327292|ref|ZP_07357734.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] gi|302863280|gb|EFL86212.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] Length = 181 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 19/104 (18%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D P S++A ISE F+ KI++ L GIV+++RG GG L R D +++ D++ Sbjct: 22 EDMPASASELAVCTGISEKFVQKIMRLLQSGGIVKSIRGIAGGHVLARNPDDVSLADIIA 81 Query: 81 ATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNAFFDV 121 A E I P V S CG R AL+A+ D Sbjct: 82 AVE-----------GGITLPGVNSAAPCG-----RVALDAWADA 109 >gi|295676942|ref|YP_003605466.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] gi|295436785|gb|ADG15955.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] Length = 176 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+++T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAEEVTVADIIIAVDEPLDATQC 92 >gi|253754824|ref|YP_003027964.1| transcriptional regulator [Streptococcus suis BM407] gi|251817288|emb|CAZ55018.1| putative transcriptional regulator protein [Streptococcus suis BM407] Length = 139 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + S IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG RL + DQIT+L V +A E + FA H+ Sbjct: 61 I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHE 96 >gi|145595671|ref|YP_001159968.1| Rrf2 family transcriptional regulator [Salinispora tropica CNB-440] gi|145305008|gb|ABP55590.1| transcriptional regulator, BadM/Rrf2 family [Salinispora tropica CNB-440] Length = 200 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%) Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R + + A R QIA A I FL IL L + G+ Sbjct: 45 MRLSARVDYALRAVAELASATGGVSTGRGRFVTADQIARAQEIPPKFLESILLQLRRGGV 104 Query: 54 VETVRGRRGGVRLCRPADQITILDVVK 80 V+ RG GG L RPA +I++ +V++ Sbjct: 105 VQAQRGPEGGYWLARPAGEISLAEVIR 131 >gi|332528393|ref|ZP_08404387.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella gracilis ATCC 19624] gi|332042156|gb|EGI78488.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella gracilis ATCC 19624] Length = 178 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 13/151 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ ++ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117 GG L R A +T+ D++ + +E +C G C +T L ALN Sbjct: 61 PGGGYTLARKAADVTVADIILSVDEPIDATQCGGKENCQGGDGGRC-MTHELWSALNTRM 119 Query: 118 --FFDVLT-------QYSIECLVRNRSSIKK 139 F D +T Q + +V ++ +IK+ Sbjct: 120 VEFLDSVTLQKLVDEQLAKGLVVEDKPAIKR 150 >gi|306841295|ref|ZP_07474006.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] gi|306288697|gb|EFM60028.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] Length = 166 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA++I I ++++A + + C Sbjct: 85 GGFCLAHPANEIAIGNIIRALDGALAPIAC 114 >gi|113868325|ref|YP_726814.1| putative transcriptional regulator [Ralstonia eutropha H16] gi|113527101|emb|CAJ93446.1| Putative Transcriptional regulator [Ralstonia eutropha H16] Length = 136 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P S IA + + + +++ L +AG+V T G GG L RPA IT+LDV + E Sbjct: 15 PVPSSLIAASVGTNPALIRRLVGQLAEAGLVATTMGSTGGATLARPAASITLLDVFRVVE 74 Query: 84 ESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + + ++ CP VG + L V +A A D L +I ++ + Sbjct: 75 TTALITLHQSAPNPACP-VGREITGALRKVADRAQAAMDDTLAGATIASMLAD 126 >gi|313672582|ref|YP_004050693.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939338|gb|ADR18530.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 137 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 7/128 (5%) Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T ++ Y IR + M + P I +I++ IS +L ++ L K IV++VR Sbjct: 1 MKITTKSRYAIRAIFAMIALGGDKEPVSIKKISDFEDISIKYLEQLFTKLRKNKIVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115 G GG +P ++IT+ D+V + + +C S+ C C + V L+K + Sbjct: 61 GTLGGYIFAKPLNEITLRDIVYSMDGPIKPVDCIDSN--GCEKSSVCAVNWVWFGLKKDI 118 Query: 116 NAFFDVLT 123 + + + +T Sbjct: 119 DNYLERIT 126 >gi|322831758|ref|YP_004211785.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602] gi|321166959|gb|ADW72658.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602] Length = 164 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + + I + V+ A +ES C Sbjct: 61 PGGGYLLGKDSGDIAVGAVITAVDESVDATRC 92 >gi|256042842|ref|ZP_05445789.1| RfF2 family protein [Brucella melitensis bv. 1 str. Rev.1] Length = 100 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91 >gi|254449219|ref|ZP_05062668.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium HTCC5015] gi|198261196|gb|EDY85492.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium HTCC5015] Length = 158 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ IAE IS +L ++ L K G+V + RG Sbjct: 1 MKLTTKGRYAVTAMLDLALHCEQGPVALADIAERQAISLSYLEQLFGRLRKRGLVSSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L A I++ V+ A +ES C Sbjct: 61 PGGGYALNAEAGAISVSAVIDAVDESVDATSC 92 >gi|311031536|ref|ZP_07709626.1| transcription repressor [Bacillus sp. m3-13] Length = 138 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKNVGEGPLSLKTIAQTHDLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L ++IT D+++ E E + Sbjct: 61 AYGGYILADEPEKITAGDIIRVLEGPISPVEVIEDEE 97 >gi|167462502|ref|ZP_02327591.1| rrf2 family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 142 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L A++++ +A + + + + +I+ L KAG+V+ VR Sbjct: 1 MKISSRFSVGVHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSG 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115 GG L + D+IT+LD+ KA + E F H+ +CP+ + L VL +A Sbjct: 60 TGGAYLLKSLDEITLLDIYKAV-DVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQ 118 Query: 116 NAFFDVLTQYSIECLVRNRS 135 A VL +++ LV + S Sbjct: 119 EAMEQVLKDITMDELVTSLS 138 >gi|209963829|ref|YP_002296744.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209957295|gb|ACI97931.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 162 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 8/111 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+K TDY + VL A +D P + + +AE + + K+L+ L + GI+ + RG Sbjct: 2 LRLSKLTDYAVVVLTAMA-RSDAPVHTAASLAERTGLPVPTVQKLLKQLARGGILASQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110 GG L R +T+ ++++A + + +C + G+CG+ S+ Sbjct: 61 AAGGYALLREDTDVTVAEIIEAIDGPIALTDCVDGAE------GACGVQSL 105 >gi|307720665|ref|YP_003891805.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas autotrophica DSM 16294] gi|306978758|gb|ADN08793.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas autotrophica DSM 16294] Length = 134 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ ++Y I L+ + + P ++ IS+ FL KILQ L KA I+ + +G Sbjct: 1 MLITRASEYAILSLILLS-KAESPMDSDTLSRELSISKSFLAKILQSLAKAQILNSYKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRK 113 GG L + I +L+V E ++ V EC S + DCP +C + L K Sbjct: 60 NGGFALKKEPQDINMLEVASCVEGKAPAVFECAPSLE-DCPSEKASTCSIWPFLHK 114 >gi|329114382|ref|ZP_08243144.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001] gi|326696458|gb|EGE48137.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001] Length = 149 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 13 VLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++ A H +S IAE ++ + +LQ L ++G++E++RG RGG RL RP Sbjct: 14 IMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLGRPR 73 Query: 71 DQITILDVVKA 81 I ++D+++A Sbjct: 74 RDIALVDIIEA 84 >gi|291551332|emb|CBL27594.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] Length = 158 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR++ Y A + S++++ + ++ KI + L +AGI++ G Sbjct: 1 MQLTSTTDYAIRIVCYLAAQRQMIS-TSELSQELSVPSNYIPKITKKLKQAGIIKACEGT 59 Query: 61 RGGVRLCRPADQITILDVV 79 GG L + + I++++++ Sbjct: 60 NGGYMLAKQPENISLMEII 78 >gi|258619946|ref|ZP_05714986.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573] gi|258627177|ref|ZP_05721965.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603] gi|262165059|ref|ZP_06032796.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223] gi|262172182|ref|ZP_06039860.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451] gi|258580479|gb|EEW05440.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603] gi|258587679|gb|EEW12388.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573] gi|261893258|gb|EEY39244.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451] gi|262024775|gb|EEY43443.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223] Length = 160 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI-ECLV 131 I+I V+ A +ES +C K DC C ++ R + D L ++ E +V Sbjct: 61 ISIGTVIAAVDESVDATKCNG--KGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118 Query: 132 RNR 134 N Sbjct: 119 DNE 121 >gi|150025901|ref|YP_001296727.1| hypothetical protein FP1858 [Flavobacterium psychrophilum JIP02/86] gi|149772442|emb|CAL43924.1| Protein of unknown function YjeB [Flavobacterium psychrophilum JIP02/86] Length = 139 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L TD+ +R+LMY + + ++++ IS L K++Q L K + T RG Sbjct: 1 MKLNHFTDFSMRILMYLNHQKEGKTTSLDELSDQFKISRNHLIKVVQFLSKNQYIHTKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG+ + I + +++ E+ + + C + + P +C L + + +F Sbjct: 61 KNGGIHISNETKTIPLGNLINILEQDNSPIINCDSKPCVLAP--HNCKLKYIFQLGYQSF 118 Query: 119 FDVLTQYSIECLV 131 + L Q+++ L Sbjct: 119 INTLNQFTLSDLT 131 >gi|110634404|ref|YP_674612.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285388|gb|ABG63447.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp. BNC1] Length = 169 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 17/136 (12%) Query: 10 GIRVLMYCAI-------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 G+ ++CA+ P S +AE +S +L K LQ L A I+E+V G G Sbjct: 6 GVEAAIHCAVVLAQLEGEGTLPG--SALAELYGLSPSYLLKHLQALAAAKILESVPGPYG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-------LVGSCGLTSVLRKAL 115 G RL + ++I++LD+V A E C A + P CG+ + + +A Sbjct: 64 GYRLAKAPERISLLDIVLAVEGPKPAFRC-AEIRQRGPGALEPSAYAKPCGINAAMLRAE 122 Query: 116 NAFFDVLTQYSIECLV 131 A+ VL + + +V Sbjct: 123 RAWRAVLAETKLSEIV 138 >gi|261212153|ref|ZP_05926439.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341] gi|260838761|gb|EEX65412.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341] Length = 160 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI-ECLV 131 I+I V+ A +ES +C K DC C ++ R + D L ++ E +V Sbjct: 61 ISIGTVIAAVDESVDATKCNG--KGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118 Query: 132 RN 133 N Sbjct: 119 DN 120 >gi|254720792|ref|ZP_05182603.1| RfF2 family protein [Brucella sp. 83/13] gi|265985850|ref|ZP_06098585.1| transcriptional regulator [Brucella sp. 83/13] gi|306845400|ref|ZP_07477974.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] gi|264664442|gb|EEZ34703.1| transcriptional regulator [Brucella sp. 83/13] gi|306274143|gb|EFM55959.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] Length = 143 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA++I I ++++A + + C Sbjct: 62 GGFCLAHPANEIAIGNIIRALDGALAPIAC 91 >gi|237747468|ref|ZP_04577948.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229378819|gb|EEO28910.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 155 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A H + P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVMAMIDLARHQKNGPVSLAGISERQDISVAYLEQLFSKLRRGNLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L A ITI D+V A +E V C Sbjct: 61 PGGGYLLSGNAGDITIADIVFAVDEPLDVTRC 92 >gi|291523912|emb|CBK89499.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale DSM 17629] gi|291528627|emb|CBK94213.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale M104/1] Length = 141 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +A + + + + KILQ L AG++E RG GGV + RP +QIT LDV KA E Sbjct: 30 MAASIGTNPVIIRKILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 82 >gi|15895504|ref|NP_348853.1| hypothetical protein CA_C2236 [Clostridium acetobutylicum ATCC 824] gi|15025236|gb|AAK80193.1|AE007724_2 Uncharacterized conserved protein of YjeB/RRF2 family [Clostridium acetobutylicum ATCC 824] gi|325509651|gb|ADZ21287.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 147 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG++ ++ A++ ND + I++ ISE +L +I L K G+V+ + Sbjct: 1 MKISTKGRYGLKAMIDLAVNSVNDIVT-LKSISQREKISEGYLEQIFSALRKKGLVKGRK 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVA-----ECFASHKIDCPLVGSCGLTSVLRK 113 G +GG L + +IT+ D++ A E V E K+D + G +V K Sbjct: 60 GSQGGYVLGKSMKEITVADILNALEGDLSVVERDENEILKEDKLDNFIRG-----NVWTK 114 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A +V+ ++E LV + +++ Sbjct: 115 INMAIEEVVVSITLEDLVMDYNNV 138 >gi|288906317|ref|YP_003431539.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306832374|ref|ZP_07465527.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979331|ref|YP_004289047.1| BadM/Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733043|emb|CBI14624.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304425414|gb|EFM28533.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179259|emb|CBZ49303.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 133 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R Y IRV++ +N+ + + IA+ IS+ +L I++ +V ++ GR Sbjct: 2 ISTRGRYAIRVMIDLVENNNGHYIPLKDIAKRQEISKKYLEIIVKEMVAGELLIGASGRG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R ++ T+ +++ E + C A DCP C + + N D Sbjct: 62 GGYKLRRKPEEYTVGEILDLMEGTLSSVACLADKSFDCPRKDKCKTLPMWTEYDNLVHDF 121 Query: 122 LTQYSIECLVRN 133 +I LV N Sbjct: 122 FYGKTILDLVNN 133 >gi|86605142|ref|YP_473905.1| transcriptional regulator [Synechococcus sp. JA-3-3Ab] gi|86553684|gb|ABC98642.1| putative transcriptional regulator [Synechococcus sp. JA-3-3Ab] Length = 150 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT R Y IR L+ A+ + + IAE I +L K+L L +AG+V + RG Sbjct: 1 MRLTTRATYSIRALLDLAMLGQVAS-VRAIAERQQIPAPYLEKLLIELRQAGLVCSQRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF 86 +GG RL R +I I ++ A ES Sbjct: 60 QGGYRLARAPRRIPISAILAAVGESL 85 >gi|292490815|ref|YP_003526254.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4] gi|291579410|gb|ADE13867.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4] Length = 163 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K TDYGI ++ A + + ++ + + KIL+ L +A ++ + RG Sbjct: 2 LRMSKMTDYGIVLMTRLAADPKGQHAAADLSAQVEMPLPTVSKILKQLARAQLLVSSRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 +GG L RP + I++ +++ E + EC ++ G CG S Sbjct: 62 QGGYSLARPPETISVAEIITTLEGPIGLTECIST-------PGECGQES 103 >gi|325473526|gb|EGC76719.1| hypothetical protein HMPREF9353_02145 [Treponema denticola F0402] Length = 139 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 I+ + ++ + + KIL L KAG+VET G GG L + AD+IT+LDV A E Sbjct: 31 ISASTGVNAVIIRKILLQLQKAGLVETAAGV-GGSHLAQAADKITLLDVYNAINEGEEER 89 Query: 90 ECFASH---KIDCPLVGS---CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + F H CP VGS L + L A A D L + +I L ++ Sbjct: 90 DIFNFHPKPNSKCP-VGSKIHLVLDTKLDDAQKAMKDSLNKTTIADLSKD 138 >gi|121594494|ref|YP_986390.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|222110831|ref|YP_002553095.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY] gi|120606574|gb|ABM42314.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] gi|221730275|gb|ACM33095.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus TPSY] Length = 178 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A IT+ D++ + +E +C K +C +G G +T L +LN Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116 Query: 118 ----FFDVLT 123 F D +T Sbjct: 117 RMVEFLDSVT 126 >gi|146308527|ref|YP_001188992.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576728|gb|ABP86260.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas mendocina ymp] Length = 165 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R I + V+ A ES C + DC +C Sbjct: 61 PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104 >gi|88813311|ref|ZP_01128550.1| Rrf2 family protein [Nitrococcus mobilis Nb-231] gi|88789483|gb|EAR20611.1| Rrf2 family protein [Nitrococcus mobilis Nb-231] Length = 163 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ ++ Y + LM+ AIHN P +++I+ IS ++ +I+ L +AG+V+ G Sbjct: 2 IRLSTKSRYAVSALMHLAIHNQAGPVPLAEISVCQGISMSYVEQIVGRLRRAGLVQGTPG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL R + I++ +V+ E+ Sbjct: 62 PGGGYRLGRSPEHISVGEVIALMEDG 87 >gi|296282946|ref|ZP_06860944.1| transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 140 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ DY I V+M R+S +A+ I KI+ L AG++ + R Sbjct: 1 MRLSNLADYAI-VIMAATARKCGGGRVSSADLAQETGIPVPTAQKIVSKLSAAGLLRSTR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 G GG++L RPA I++ D+V+A E + C Sbjct: 60 GAGGGLQLGRPAAAISMADIVEAIEGPIALVSCI 93 >gi|307324656|ref|ZP_07603862.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306889538|gb|EFN20518.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 158 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++C + + P +++AE +S +L K LQ L +AG+V +V+G+ GG L Sbjct: 4 GVEWALHCCVVLTSVEEPVPATKLAEFHDVSASYLAKQLQALSRAGLVRSVQGKAGGYIL 63 Query: 67 CRPADQITILDVVKATE 83 R IT+LDVV+A + Sbjct: 64 TREPASITLLDVVEAVD 80 >gi|265989282|ref|ZP_06101839.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|262999902|gb|EEZ12641.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] Length = 123 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIAC 114 >gi|298491131|ref|YP_003721308.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708] gi|298233049|gb|ADI64185.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708] Length = 147 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA+ I +L K+L + +AG+V+++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPVSVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 GG +L QI+I +++A E+ Sbjct: 61 SIGGYQLAIKPAQISIGQILEAVGENI 87 >gi|317501323|ref|ZP_07959526.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088357|ref|ZP_08337276.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897287|gb|EFV19355.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330408601|gb|EGG88067.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium 3_1_46FAA] Length = 144 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 KILQ L AG++E RG GGV + RP +QIT LDV KA E Sbjct: 43 KILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 82 >gi|159038921|ref|YP_001538174.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917756|gb|ABV99183.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola CNS-205] Length = 156 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-----IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R + A + ++ QIA A I FL IL L + G+ Sbjct: 1 MRLSARVDYALRAVAELASVTSGVSTGRGRTVTADQIARAQEIPPKFLESILLQLRRGGV 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVK 80 V RG GG L RPA++I++ +V++ Sbjct: 61 VRAQRGPEGGYWLARPAEEISLAEVIR 87 >gi|39933740|ref|NP_946016.1| putative transcriptional regulator BadM [Rhodopseudomonas palustris CGA009] gi|6136594|sp|O07465|BADM_RHOPA RecName: Full=Putative HTH-type transcriptional regulator BadM gi|2190585|gb|AAC13361.1| unknown [Rhodopseudomonas palustris] gi|39647587|emb|CAE26107.1| putative transcriptional regulator, badM [Rhodopseudomonas palustris CGA009] Length = 156 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 3 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++T+LD++ E++ + AS + S L VLR Sbjct: 63 GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDHEE----SRALHKVLRDIDEIAMT 118 Query: 121 VLTQYSIECLVR 132 L SI L++ Sbjct: 119 TLRSVSITSLLK 130 >gi|330504691|ref|YP_004381560.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918977|gb|AEB59808.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 165 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R I + V+ A ES C + DC +C Sbjct: 61 PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104 >gi|87303358|ref|ZP_01086146.1| putative transcriptional regulator [Synechococcus sp. WH 5701] gi|87282006|gb|EAQ73968.1| putative transcriptional regulator [Synechococcus sp. WH 5701] Length = 146 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 43/81 (53%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L +R I+ L+ A+ + +A + I E L ++L L +A +VE RGR G Sbjct: 2 LKRRGLQAIQALLELALEPESWRSGPDLAASLAIPEPMLEQVLLQLRRAKLVEARRGRHG 61 Query: 63 GVRLCRPADQITILDVVKATE 83 G RL R A I +L+V++A E Sbjct: 62 GYRLQRTAAAIPLLEVLQAVE 82 >gi|332526731|ref|ZP_08402833.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111134|gb|EGJ11166.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 177 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRSHSGPVALAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+ D++ A +E C G C + N Sbjct: 61 PGGGYSLGRGADEITVADIIVAVDEPIDATGCGGKENCHGDDGGRCMTHDLWASLNNKMI 120 Query: 120 DVLTQYSIECLV 131 + L S++ LV Sbjct: 121 EYLDSISLKKLV 132 >gi|192289160|ref|YP_001989765.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282909|gb|ACE99289.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris TIE-1] Length = 156 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 3 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++T+LD++ E++ + AS + S L VLR Sbjct: 63 GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDHEE----SRALHKVLRDIDEIAMT 118 Query: 121 VLTQYSIECLVR 132 L SI L++ Sbjct: 119 TLRSVSITSLLK 130 >gi|163796150|ref|ZP_02190112.1| rrf2 family protein [alpha proteobacterium BAL199] gi|159178609|gb|EDP63149.1| rrf2 family protein [alpha proteobacterium BAL199] Length = 167 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L + TDY I VL A + +A+A + + K+L+ + ++ RG Sbjct: 13 LRLNRMTDYAIVVLGQMAHEAGRVRTAAALADATGVPVPTVSKLLKQMAAVSLISAHRGA 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNA 117 +GG L RPA +T+ ++++A E + C + C + SC G + + +A+ A Sbjct: 73 KGGYALDRPAAAVTVTEIIQALEGPIALTACVDGAEECCEVEHSCPMRGNWNRVNRAIRA 132 Query: 118 FFDVLT 123 D +T Sbjct: 133 ALDGVT 138 >gi|319779386|ref|YP_004130299.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9] gi|317109410|gb|ADU92156.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9] Length = 178 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + + P +S I+ IS +L ++ L + +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRSHSGPVTLSAISSRQNISLSYLEQLFSKLRRHELVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV------GSCGLTSVLRK 113 GG L R A IT+ D+V A +E C +K+ C G C +T L Sbjct: 61 PGGGYTLARNAKDITVADIVFAVDEPLDATGC--GNKLPCNNGRDGRDHGHC-MTHDLWS 117 Query: 114 ALNAFF-DVLTQYSIECLV 131 +LNA D L S++ LV Sbjct: 118 SLNAHMVDYLDSVSLQDLV 136 >gi|317132029|ref|YP_004091343.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] gi|315470008|gb|ADU26612.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] Length = 135 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +R++ A + ++E ++ F KI + L +AGIV + +G Sbjct: 1 MRITQEADYAVRIIDCLATAGTRMD-ARTVSEKTGVTLRFTLKIFRKLGQAGIVRSFKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102 +GG L R D+I + V++A + + C + + C L+ Sbjct: 60 QGGYELARDPDEINLRQVIEAVDGPININRCM-TGSLPCALL 100 >gi|83814365|ref|YP_444885.1| rrf2 family protein (putative transcriptional regulator) [Salinibacter ruber DSM 13855] gi|83755759|gb|ABC43872.1| rrf2 family protein (putative transcriptional regulator) [Salinibacter ruber DSM 13855] Length = 215 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 13/104 (12%) Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNR----ISQIAEACCISELFLFKILQP 47 M L+K +YG+R ++Y + P R I I++ I FL K+ Q Sbjct: 54 MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 113 Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 L AG++ + RG GGV L R D I++ ++V A + + EC Sbjct: 114 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEEC 157 >gi|56963162|ref|YP_174890.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909402|dbj|BAD63929.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 148 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 Y ++ L++ + ++IAE C ++L LVKAGIVE GR GG L R Sbjct: 17 YALQSLVFMSGQQKSHCASNEIAEHVCSEATLTRRVLSRLVKAGIVEAREGREGGYALRR 76 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------LTSVLRKALNAFFDVL 122 + I+ DV +A + V + + +D G T+V+ ++ VL Sbjct: 77 KPEDISFADVYRAIQ----VVDPLYTGLLDTTTSGPFAQETREMFTTVINESEKQLIQVL 132 Query: 123 TQYSIECLVRN 133 +++I L++ Sbjct: 133 ERHTIADLIKK 143 >gi|322436026|ref|YP_004218238.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] gi|321163753|gb|ADW69458.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] Length = 124 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 13/133 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R +RVL A D + + IAEA S + + +I L KAG +E +G Sbjct: 1 MAQSGRFGLSVRVLGVLAAEPDAMHTSAAIAEAIGSSPVMVRRIFSALHKAGFIEQKKGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL A I + D+ A E + ++ G L + ++K A + Sbjct: 61 AGGARLKHSAKSIGLGDLFVAIEPDWLMS-------------GEKALDAAMKKVRTAAVE 107 Query: 121 VLTQYSIECLVRN 133 + + SI + + Sbjct: 108 AMNETSIAAVGKK 120 >gi|319762894|ref|YP_004126831.1| iron-sulfur cluster assembly transcription factor iscr [Alicycliphilus denitrificans BC] gi|330824973|ref|YP_004388276.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117455|gb|ADU99943.1| iron-sulfur cluster assembly transcription factor IscR [Alicycliphilus denitrificans BC] gi|329310345|gb|AEB84760.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus denitrificans K601] Length = 178 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------LTSVLRK 113 GG L R A IT+ D++ + +E +C K +C +G G L + L + Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHDLWATLNQ 116 Query: 114 ALNAFFDVLT 123 + F D +T Sbjct: 117 RMVEFLDSVT 126 >gi|260425936|ref|ZP_05779915.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] gi|260420428|gb|EEX13679.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] Length = 153 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + I++ +S +L ++ L +AG+V +VRG Sbjct: 1 MKLSTKGRYAMVALADIAMQPDGDLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL RPA +I ++D++ A +E+ Sbjct: 61 PGGGYRLARPASEIRVVDILAAVDET 86 >gi|256389825|ref|YP_003111389.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256356051|gb|ACU69548.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 155 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVE 55 M L T++ +++CA + P + A+ +L +L K LQ L +AGI+ Sbjct: 1 MKLPTSTEW----VLHCAATLAQLRPAETASAAQLAAYYDLPAPYLAKQLQALTRAGILS 56 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 G RGG RL R A IT+L +V+A + + EC Sbjct: 57 ATTGPRGGFRLARAAKDITMLQIVEAVDGAAAPYEC 92 >gi|294782303|ref|ZP_06747629.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] gi|294480944|gb|EFG28719.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] Length = 140 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y +H D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I +C + L+K + Sbjct: 60 GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDEL 119 Query: 119 FDVLTQYSIECLVRNRSSI 137 D + + LV + + Sbjct: 120 LDDFDKINFHDLVEENTGL 138 >gi|289548069|ref|YP_003473057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermocrinis albus DSM 14484] gi|289181686|gb|ADC88930.1| transcriptional regulator, BadM/Rrf2 family [Thermocrinis albus DSM 14484] Length = 143 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 ++++ I FL KI LV+ I+++ +G GG P ++ITILDV+KA +E + Sbjct: 28 EEVSQVQNIPRPFLSKIFHKLVRERILKSYKGPTGGFTFAIPPEEITILDVIKALDEDYK 87 Query: 88 VAEC 91 + C Sbjct: 88 LDYC 91 >gi|237800030|ref|ZP_04588491.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022885|gb|EGI02942.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 163 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + VV A ES C Sbjct: 61 PGGGYQLSRDMKVIQVAQVVDAVNESVDATRC 92 >gi|157693884|ref|YP_001488346.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682642|gb|ABV63786.1| Rrf2 family transcriptional regulator [Bacillus pumilus SAFR-032] Length = 142 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ IA + + + + +I+ L KAG++ T G+ Sbjct: 1 MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE-----ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113 GG +L R D+IT+LDV KA E E F + E S DCP+ + L +L + Sbjct: 61 -GGSQLNRSEDEITLLDVYKAVEVVDEGELFQIHE---SPNPDCPIGANIQAVLELILCR 116 Query: 114 ALNAFFDVLTQYSIECLVR 132 A +A VL + + L + Sbjct: 117 AQSAMEQVLAEIKLSELTQ 135 >gi|154254085|ref|YP_001414909.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154158035|gb|ABS65252.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 149 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 9/109 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 + L+K+T + ++ AI N P+ + +I + I + +L +++Q LV AGI++ VR Sbjct: 2 LRLSKKTWLALEAVVDVAI-NARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVR 60 Query: 59 GRRGGVRLCRPADQITILDVVK------ATEESFFVAECFASHKIDCPL 101 G RGG L R +I + +VV+ A++E A ++ PL Sbjct: 61 GPRGGYTLARERRRIPVGEVVRVVGAMEASDEPTATAPSELGERVIAPL 109 >gi|111225126|ref|YP_715920.1| RRF2 family protein [Frankia alni ACN14a] gi|111152658|emb|CAJ64399.1| RRF2 family protein [Frankia alni ACN14a] Length = 135 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 31/44 (70%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 FL IL L +AG+V++ RG GG +L RPADQIT+ V++ T+ Sbjct: 24 FLENILTDLRRAGLVQSRRGADGGYQLGRPADQITVATVIRVTD 67 >gi|296115596|ref|ZP_06834223.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295977845|gb|EFG84596.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 106 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCP 100 + L +AG+V + RG GG RL RPAD+I D+++ T+ + C F DC Sbjct: 1 MSDLRRAGLVTSQRGSGGGYRLARPADRIMFADIIRVTDGPISMLPCVSRNFYEQCEDCS 60 Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSI 127 C L + + A D+L S+ Sbjct: 61 NEEICALRKIFAEVRTAVADILDHRSL 87 >gi|146276848|ref|YP_001167007.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555089|gb|ABP69702.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 189 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A + R +I + SE FL IL + AG + ++RG Sbjct: 25 ITQKMKYALKALMVLAEEHSGEQRALRIEDIAARSETPKRFLEHILLDIRNAGYIASIRG 84 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + QI + D+++ + C + DC SC + V + Sbjct: 85 RSGGYLLIKEPAQIPLSDLLRMIDGPIAPLPCLSRRSYQRCDDCTDETSCRIRKVFAEIF 144 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 ++ ++ ++ LVR ++ ++I A Sbjct: 145 WSYLLLIESLTLADLVRTPAASEQILAA 172 >gi|237740621|ref|ZP_04571102.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229422638|gb|EEO37685.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 140 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y ++++ Y +H D + IS +I+ I LF +I++ L KAG+V+ R Sbjct: 1 MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R ++T D+++ ++ + C S I +C + L+K + Sbjct: 60 GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDEL 119 Query: 119 FDVLTQYSIECLVRNRSSI 137 D + + LV + + Sbjct: 120 LDDFDKINFHDLVEKNTGL 138 >gi|332295070|ref|YP_004436993.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium narugense DSM 14796] gi|332178173|gb|AEE13862.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium narugense DSM 14796] Length = 141 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ +T YG+R L A + Y Q+A+ IS +L ++L L GIVE+ +G Sbjct: 4 LSTKTRYGLRALCQLAQVKKGYTIPAHQLAKDQEISLSYLEQVLNVLKHHGIVESFKGPG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L +I + DV++ E + +C A C C ++ +K N Sbjct: 64 GGYKLNVDPKKIILKDVIEILEGPVLITDCSADPS-KCHRAEDCLTRALWQKIGNQVNSF 122 Query: 122 LTQYSIECLVR 132 L + ++ LV+ Sbjct: 123 LGKITLNDLVK 133 >gi|256424752|ref|YP_003125405.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039660|gb|ACU63204.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis DSM 2588] Length = 144 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 7/106 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR +++ A + ++I IA+ E F+ KILQ L + G+V++++G Sbjct: 2 FSKTCEYAIRAMIFIAQKSKDGSKIGIRDIAKGIDSPEYFIAKILQELGRKGVVQSMKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101 GG L A + ++ +VKA + + C S K CPL Sbjct: 62 TGGFYLDNSARKTSLATIVKAVDGDNIFSGCGLGLKQCSDKHPCPL 107 >gi|312137813|ref|YP_004005149.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887152|emb|CBH46461.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 152 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH++ R D +R L+ A + + ++ + ++ FL +L L + G+V++ RG Sbjct: 1 MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL RPA +TI DV++ E Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVE 84 >gi|153811519|ref|ZP_01964187.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174] gi|149832260|gb|EDM87345.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174] Length = 136 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 KILQ L AG++E RG GGV + RP +QIT LDV KA E Sbjct: 35 KILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 74 >gi|153814767|ref|ZP_01967435.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756] gi|145847798|gb|EDK24716.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756] Length = 136 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 KILQ L AG++E RG GGV + RP +QIT LDV KA E Sbjct: 35 KILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 74 >gi|114569861|ref|YP_756541.1| BadM/Rrf2 family transcriptional regulator [Maricaulis maris MCS10] gi|114340323|gb|ABI65603.1| transcriptional regulator, BadM/Rrf2 family [Maricaulis maris MCS10] Length = 158 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 36/68 (52%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +S IA IS +L ++ L +A IV +VRG GG RL R A +I I D++ A + Sbjct: 25 PVTLSDIASRQSISLSYLEQLFAKLRRADIVSSVRGPGGGYRLSRTASEIRISDIILAVD 84 Query: 84 ESFFVAEC 91 E C Sbjct: 85 EPLRATRC 92 >gi|90021696|ref|YP_527523.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus degradans 2-40] gi|89951296|gb|ABD81311.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus degradans 2-40] Length = 138 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L + A +D P +QIA+ + + + + + L + G VE+ +GR GG + RP Sbjct: 11 LHILAHLAT-SDEPVTSTQIAKFQSTNPVVVRRTMGLLREHGYVESTKGRNGGWAISRPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 IT+LD+ +A ES CP+ S Sbjct: 70 SDITLLDIHRAFGESSLFTIGLTDEHAHCPIEKS 103 >gi|170767352|ref|ZP_02901805.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia albertii TW07627] gi|170123686|gb|EDS92617.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia albertii TW07627] Length = 162 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86 >gi|327481765|gb|AEA85075.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas stutzeri DSM 4166] Length = 163 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + V+ A ES C Sbjct: 61 PGGGYQLSRDMAGIQVAQVIDAVNESVDATRC 92 >gi|325676084|ref|ZP_08155766.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325553124|gb|EGD22804.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 152 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH++ R D +R L+ A + + ++ + ++ FL +L L + G+V++ RG Sbjct: 1 MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL RPA +TI DV++ E Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVE 84 >gi|255533630|ref|YP_003094002.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM 2366] gi|255346614|gb|ACU05940.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM 2366] Length = 145 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 7/131 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ L+ + + P +I ++AE I FL +IL + AG + + +G Sbjct: 2 LSKKTKYAIKALVALGKNRENPPMQIVRLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116 GG L + ++I + D+++ T+ + C AS K +C +CG+ + Sbjct: 62 GGYSLNKEPNEIYLADILRITDGPIAMVPC-ASLKFYRKCDECHDEVTCGIRKTFIDVRD 120 Query: 117 AFFDVLTQYSI 127 A VL Q +I Sbjct: 121 ATLKVLAQTTI 131 >gi|255035951|ref|YP_003086572.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] gi|254948707|gb|ACT93407.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] Length = 145 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 7/143 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR + Y A ++ ++ +IA E FL KILQ L K G+V + +G Sbjct: 4 FSKTCEYAIRAVFYIAQKSEEGQKVGIREIALHINSPEPFLAKILQKLSKDGLVLSSKGP 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L Q ++ D+V+A E C C C L + +K N Sbjct: 64 HGGFYLDPGGLQRSLADIVQAIEGDSIFNGCGMGLSY-CSQANPCPLHNDFKKIRNQIVI 122 Query: 121 VLTQYSI----ECLVRNRSSIKK 139 +L SI E L++ + ++ K Sbjct: 123 MLRNTSIGKFNEGLIQGQLTLNK 145 >gi|326387606|ref|ZP_08209212.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207652|gb|EGD58463.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 150 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 8/129 (6%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A R+ IAEA I FL IL + + GIV + RGR Sbjct: 2 LSQKTRYTIRALQHLADAFGQGSVRLDAIAEAQNIPRKFLTVILSEMAREGIVISQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSC---GLTSVLRKA 114 GG L P I D+++ S + C + +H+ +C C GL LR Sbjct: 62 GGYELALPPVDIRYGDIIRLCRGSLALVPCASRNAHETCANCLPEEECRLRGLMLQLRDE 121 Query: 115 LNAFFDVLT 123 A D +T Sbjct: 122 TAAILDRIT 130 >gi|322508566|gb|ADX04020.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] Length = 141 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91 + KI L KAG+V G RGG L R A +I+ LD+V A E + EC Sbjct: 1 MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAV 60 Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 F + D G C + +V+ +A A D L +++ Sbjct: 61 FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 96 >gi|311694378|gb|ADP97251.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15] Length = 152 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H D P ++ I+ IS +L ++ L + +V ++RG GG RL RPA Sbjct: 1 MLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSIRGPGGGYRLSRPAAD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + I +VV A ES C +K DC C + + L++ S+ L+R Sbjct: 61 LYIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIHQFLSEISLGDLMR 118 >gi|116333404|ref|YP_794931.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098751|gb|ABJ63900.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis ATCC 367] Length = 168 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 34/60 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P S +AE IS +L KI+Q L IV+TV GR GG+ L R IT+LD+ A E Sbjct: 25 PLHSSLVAERLGISTSYLKKIVQRLAAGKIVKTVSGRVGGIVLTRNPHDITLLDIFDAIE 84 >gi|288957208|ref|YP_003447549.1| transcriptional regulator [Azospirillum sp. B510] gi|288909516|dbj|BAI71005.1| transcriptional regulator [Azospirillum sp. B510] Length = 151 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 8/112 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++K+ + I ++ A + P + +I I + +L ++LQ LV+ G++ VRG Sbjct: 2 LRISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVREGVLAGVRG 61 Query: 60 RRGGVRLCRPADQITILDVVK-------ATEESFFVAECFASHKIDCPLVGS 104 RGG RL R +IT+ ++VK AT+ A H++ PL G Sbjct: 62 PRGGYRLARERRRITLGEIVKVVRAMETATDPIEEPAGSVLGHQVVRPLWGE 113 >gi|229167407|ref|ZP_04295145.1| Transcriptional regulator [Bacillus cereus AH621] gi|228615969|gb|EEK73056.1| Transcriptional regulator [Bacillus cereus AH621] Length = 120 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 24 PNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 PN+ + Q+AE +S +L KIL L K G++ + G +GG L + I+ LD++ Sbjct: 9 PNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSSNWEDISFLDIIH 68 Query: 81 ATEESFFVAEC 91 A E + EC Sbjct: 69 AIEGKTSLFEC 79 >gi|227538160|ref|ZP_03968209.1| possible transcription regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242003|gb|EEI92018.1| possible transcription regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 149 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R +MY A + + I +IAEA E FL KILQ L K G++ + +G Sbjct: 8 FSKTCEYALRAVMYIAQCSQQGEKVGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GG + + + D+V + + C + +D C C L +K F Sbjct: 68 NGGFYMTPEDTKRPLADIVSSIDGVQLFEGC--AMGLDYCSKENPCPLHHDFKKIRKKLF 125 Query: 120 DVLTQYSI 127 +L + SI Sbjct: 126 VMLQETSI 133 >gi|149369729|ref|ZP_01889581.1| transcriptional regulator, rrf2 family protein [unidentified eubacterium SCB49] gi|149357156|gb|EDM45711.1| transcriptional regulator, rrf2 family protein [unidentified eubacterium SCB49] Length = 138 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+++T YGI+ L Y A ND P +I+ IA + IS+ FL IL L KAG++ + +G+ Sbjct: 2 LSRKTKYGIKALTYLAQQEGND-PTQIAVIAVSENISQKFLESILLTLRKAGVLGSKKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116 GG L + AD I I + + E + C F DCP +C + +++ + + Sbjct: 61 GGGYYLLKDADSIKISQIYRVLEGPIAMVPCVSLNFYEKCDDCPDEDTCSVHNLMIQVRD 120 Query: 117 AFFDVLTQYSIECLVRNR 134 + ++L ++ ++ + Sbjct: 121 STLNILENTTLADIISEQ 138 >gi|229523430|ref|ZP_04412837.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80] gi|229339793|gb|EEO04808.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80] Length = 160 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 4/105 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I+I V+ A +ES +C + K DC C LT L + L++ Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 102 >gi|331673987|ref|ZP_08374750.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA280] gi|331069260|gb|EGI40652.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA280] Length = 162 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86 >gi|320662819|gb|EFX30151.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7 str. USDA 5905] Length = 162 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86 >gi|295097923|emb|CBK87013.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 163 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|225628410|ref|ZP_03786444.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] gi|225616256|gb|EEH13304.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] Length = 166 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIAC 114 >gi|15892655|ref|NP_360369.1| hypothetical protein RC0732 [Rickettsia conorii str. Malish 7] gi|15619826|gb|AAL03270.1| unknown [Rickettsia conorii str. Malish 7] Length = 139 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + P +++++ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASKSSTEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 +GG L ++I I D++ A E+F + C+ Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCY 93 >gi|16761458|ref|NP_457075.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765864|ref|NP_461479.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140845|ref|NP_804187.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412578|ref|YP_149653.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181108|ref|YP_217525.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612691|ref|YP_001586656.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549428|ref|ZP_02343187.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992670|ref|ZP_02573766.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232118|ref|ZP_02657176.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238283|ref|ZP_02663341.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243329|ref|ZP_02668261.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261413|ref|ZP_02683386.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466699|ref|ZP_02700553.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821475|ref|ZP_02833475.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444495|ref|YP_002041806.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448157|ref|YP_002046605.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472929|ref|ZP_03078913.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737710|ref|YP_002115607.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197261796|ref|ZP_03161870.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361513|ref|YP_002141149.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243196|ref|YP_002216610.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387218|ref|ZP_03213830.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929440|ref|ZP_03220514.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353643|ref|YP_002227444.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857952|ref|YP_002244603.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161574|ref|ZP_03347284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416856|ref|ZP_03350000.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425310|ref|ZP_03358060.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580754|ref|ZP_03362580.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622388|ref|ZP_03375171.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646424|ref|ZP_03376477.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855574|ref|ZP_03383814.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582916|ref|YP_002636714.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912665|ref|ZP_04656502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825402|ref|ZP_06544639.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|75481667|sp|Q57LG8|ISCR_SALCH RecName: Full=HTH-type transcriptional regulator iscR gi|81362034|sp|Q5PNG2|ISCR_SALPA RecName: Full=HTH-type transcriptional regulator iscR gi|81416273|sp|Q7CQ10|ISCR_SALTY RecName: Full=HTH-type transcriptional regulator iscR gi|81849081|sp|Q8XF25|ISCR_SALTI RecName: Full=HTH-type transcriptional regulator iscR gi|189044751|sp|A9N1X3|ISCR_SALPB RecName: Full=HTH-type transcriptional regulator iscR gi|226711622|sp|B5FR87|ISCR_SALDC RecName: Full=HTH-type transcriptional regulator iscR gi|226711623|sp|B5R5A3|ISCR_SALEP RecName: Full=HTH-type transcriptional regulator iscR gi|226711624|sp|B5RD13|ISCR_SALG2 RecName: Full=HTH-type transcriptional regulator iscR gi|226711625|sp|B4TDB7|ISCR_SALHS RecName: Full=HTH-type transcriptional regulator iscR gi|226711626|sp|B4T1C0|ISCR_SALNS RecName: Full=HTH-type transcriptional regulator iscR gi|226711627|sp|B5BAW5|ISCR_SALPK RecName: Full=HTH-type transcriptional regulator iscR gi|226711628|sp|B4TRX7|ISCR_SALSV RecName: Full=HTH-type transcriptional regulator iscR gi|254806056|sp|C0PYK6|ISCR_SALPC RecName: Full=HTH-type transcriptional regulator iscR gi|25303602|pir||AG0824 conserved hypothetical protein STY2790 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421089|gb|AAL21438.1| hypothetical protein STM2544 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503758|emb|CAD02747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136470|gb|AAO68036.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126835|gb|AAV76341.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128741|gb|AAX66444.1| believed to be involved in assembly of Fe-S clusters [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362055|gb|ABX65823.1| hypothetical protein SPAB_00388 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403158|gb|ACF63380.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406461|gb|ACF66680.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459293|gb|EDX48132.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713212|gb|ACF92433.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630843|gb|EDX49435.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092989|emb|CAR58421.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240051|gb|EDY22671.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288800|gb|EDY28173.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937712|gb|ACH75045.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604316|gb|EDZ02861.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321159|gb|EDZ06359.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273424|emb|CAR38399.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325358|gb|EDZ13197.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329099|gb|EDZ15863.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333691|gb|EDZ20455.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337574|gb|EDZ24338.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341984|gb|EDZ28748.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349628|gb|EDZ36259.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709755|emb|CAR34107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467443|gb|ACN45273.1| hypothetical protein SPC_1107 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247740|emb|CBG25568.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994666|gb|ACY89551.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159093|emb|CBW18607.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913533|dbj|BAJ37507.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087042|emb|CBY96811.1| HTH-type transcriptional regulator iscR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222751|gb|EFX47822.1| Iron-sulfur cluster regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613314|gb|EFY10256.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620482|gb|EFY17347.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625050|gb|EFY21879.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629506|gb|EFY26282.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633893|gb|EFY30632.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635499|gb|EFY32210.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639825|gb|EFY36504.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644289|gb|EFY40833.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652256|gb|EFY48613.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654836|gb|EFY51153.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658236|gb|EFY54502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661693|gb|EFY57911.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669673|gb|EFY65819.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673320|gb|EFY69425.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674891|gb|EFY70978.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682914|gb|EFY78932.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685575|gb|EFY81570.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715598|gb|EFZ07169.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130874|gb|ADX18304.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194686|gb|EFZ79876.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200370|gb|EFZ85451.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201270|gb|EFZ86337.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208340|gb|EFZ93280.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211584|gb|EFZ96422.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216016|gb|EGA00748.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221911|gb|EGA06305.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225596|gb|EGA09823.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229313|gb|EGA13437.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235372|gb|EGA19456.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237442|gb|EGA21505.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245197|gb|EGA29198.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248771|gb|EGA32698.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254049|gb|EGA37870.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254914|gb|EGA38706.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262019|gb|EGA45584.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267803|gb|EGA51284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269638|gb|EGA53090.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624365|gb|EGE30710.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628745|gb|EGE35088.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989471|gb|AEF08454.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 164 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|296104217|ref|YP_003614363.1| putative FeS cluster assembly transcriptional regulator IscR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058676|gb|ADF63414.1| putative FeS cluster assembly transcriptional regulator IscR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 163 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|288934077|ref|YP_003438136.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Klebsiella variicola At-22] gi|290508273|ref|ZP_06547644.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. 1_1_55] gi|288888806|gb|ADC57124.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola At-22] gi|289777667|gb|EFD85664.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. 1_1_55] Length = 163 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86 >gi|241763770|ref|ZP_04761817.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] gi|241366989|gb|EER61385.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] Length = 178 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A IT+ D++ + +E +C K +C +G G +T L +LN Sbjct: 61 PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116 Query: 118 ----FFDVLT 123 F D +T Sbjct: 117 RMVEFLDSVT 126 >gi|329119447|ref|ZP_08248132.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria bacilliformis ATCC BAA-1200] gi|327464380|gb|EGF10680.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria bacilliformis ATCC BAA-1200] Length = 167 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H +++ I+E IS +L ++ L +AG+V+++RG Sbjct: 21 MRLTTKGRFAVTAMLDLAMHAQKGAVKLNDISERQNISLSYLEQLFGKLRRAGLVDSIRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG L A I+I ++ A E+ C S K +C C LT L + LN Sbjct: 81 PGGGYILAADARNISIAQIITAAEDKLDATLC--SGKTNCHNGAPC-LTHDLWENLN 134 >gi|262196227|ref|YP_003267436.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Haliangium ochraceum DSM 14365] gi|262079574|gb|ACY15543.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum DSM 14365] Length = 140 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 42/99 (42%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R + +L P IA + + + ++L L KAG+ + RG G Sbjct: 1 MNTRFAVAVHILTLLQAQAGEPASSEWIAGSVNTNPALIRRLLSQLAKAGLTRSQRGAGG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 G L R AD IT+ DV +A + V A+ CP+ Sbjct: 61 GALLARSADSITLADVYQAVSDDADVIPIHAAPNPKCPV 99 >gi|289803176|ref|ZP_06533805.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 155 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|74313057|ref|YP_311476.1| DNA-binding transcriptional regulator IscR [Shigella sonnei Ss046] gi|157162006|ref|YP_001459324.1| DNA-binding transcriptional regulator IscR [Escherichia coli HS] gi|170019186|ref|YP_001724140.1| DNA-binding transcriptional regulator IscR [Escherichia coli ATCC 8739] gi|191169254|ref|ZP_03031006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B7A] gi|193068431|ref|ZP_03049394.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E110019] gi|209920008|ref|YP_002294092.1| DNA-binding transcriptional regulator IscR [Escherichia coli SE11] gi|218555056|ref|YP_002387969.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI1] gi|256017320|ref|ZP_05431185.1| DNA-binding transcriptional regulator IscR [Shigella sp. D9] gi|260856625|ref|YP_003230516.1| DNA-binding transcriptional repressor IscR [Escherichia coli O26:H11 str. 11368] gi|260869220|ref|YP_003235622.1| DNA-binding transcriptional repressor IscR [Escherichia coli O111:H- str. 11128] gi|300817699|ref|ZP_07097914.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 107-1] gi|300820799|ref|ZP_07100949.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 119-7] gi|309794422|ref|ZP_07688845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 145-7] gi|331669279|ref|ZP_08370127.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA271] gi|331678524|ref|ZP_08379199.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H591] gi|332278315|ref|ZP_08390728.1| DNA-binding transcriptional repressor [Shigella sp. D9] gi|119371152|sp|Q3YZ21|ISCR_SHISS RecName: Full=HTH-type transcriptional regulator iscR gi|189044744|sp|A8A337|ISCR_ECOHS RecName: Full=HTH-type transcriptional regulator iscR gi|189044746|sp|B1IWD0|ISCR_ECOLC RecName: Full=HTH-type transcriptional regulator iscR gi|226711613|sp|B7M7N4|ISCR_ECO8A RecName: Full=HTH-type transcriptional regulator iscR gi|226711616|sp|B6I5A3|ISCR_ECOSE RecName: Full=HTH-type transcriptional regulator iscR gi|73856534|gb|AAZ89241.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|157067686|gb|ABV06941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli HS] gi|169754114|gb|ACA76813.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC 8739] gi|190900707|gb|EDV60504.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B7A] gi|192958383|gb|EDV88823.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E110019] gi|209913267|dbj|BAG78341.1| conserved hypothetical protein [Escherichia coli SE11] gi|218361824|emb|CAQ99422.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|257755274|dbj|BAI26776.1| DNA-binding transcriptional repressor IscR [Escherichia coli O26:H11 str. 11368] gi|257765576|dbj|BAI37071.1| DNA-binding transcriptional repressor IscR [Escherichia coli O111:H- str. 11128] gi|300526552|gb|EFK47621.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 119-7] gi|300529687|gb|EFK50749.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 107-1] gi|308121878|gb|EFO59140.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 145-7] gi|320200095|gb|EFW74684.1| Iron-sulfur cluster regulator IscR [Escherichia coli EC4100B] gi|323156187|gb|EFZ42346.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli EPECa14] gi|323169392|gb|EFZ55068.1| iron-sulfur cluster assembly transcription factor IscR [Shigella sonnei 53G] gi|323177344|gb|EFZ62932.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 1180] gi|323941207|gb|EGB37392.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli E482] gi|323944588|gb|EGB40656.1| iron-sulfur cluster assembly transcription protein IscR [Escherichia coli H120] gi|324020053|gb|EGB89272.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 117-3] gi|331064473|gb|EGI36384.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA271] gi|331074984|gb|EGI46304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H591] gi|332100667|gb|EGJ04013.1| DNA-binding transcriptional repressor [Shigella sp. D9] Length = 162 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86 >gi|206579114|ref|YP_002237116.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae 342] gi|226711620|sp|B5XNJ6|ISCR_KLEP3 RecName: Full=HTH-type transcriptional regulator iscR gi|206568172|gb|ACI09948.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae 342] Length = 163 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86 >gi|189023190|ref|YP_001932931.1| RRF2 family protein [Brucella abortus S19] gi|225686866|ref|YP_002734838.1| Rrf2 family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237817484|ref|ZP_04596475.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] gi|254706516|ref|ZP_05168344.1| transcriptional regulator, Rrf2 family protein [Brucella pinnipedialis M163/99/10] gi|256261998|ref|ZP_05464530.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|260757261|ref|ZP_05869609.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260883065|ref|ZP_05894679.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297250169|ref|ZP_06933870.1| transcriptional regulator, Rrf2 family protein [Brucella abortus bv. 5 str. B3196] gi|189021764|gb|ACD74485.1| RRF2 family protein [Brucella abortus S19] gi|225642971|gb|ACO02884.1| transcriptional regulator, Rrf2 family protein [Brucella melitensis ATCC 23457] gi|237787319|gb|EEP61536.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] gi|260677369|gb|EEX64190.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872593|gb|EEX79662.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|263091482|gb|EEZ16018.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|297174038|gb|EFH33402.1| transcriptional regulator, Rrf2 family protein [Brucella abortus bv. 5 str. B3196] Length = 166 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIAC 114 >gi|153852839|ref|ZP_01994276.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814] gi|149754481|gb|EDM64412.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814] Length = 144 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A + N R+ I+ I+ ++ +I+ L KAG V + RG Sbjct: 1 MKISTKGRYALRIMIDLAENANGEYIRLKDISARQGITLKYMEQIMPMLTKAGYVRSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116 GG L + ++ T D+++ TE S C C C L+K ++ Sbjct: 61 NNGGYMLAKEPEEYTAGDIIRTTEGSLAPIACLDDVPNRCERQDQCSTLEFWEGLKKVID 120 Query: 117 AFFDVLTQYSIECLVRNRSS 136 + D +T + LV+N Sbjct: 121 QYVDGVT---LADLVKNHEE 137 >gi|15803058|ref|NP_289088.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 EDL933] gi|15832651|ref|NP_311424.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. Sakai] gi|16130456|ref|NP_417026.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|24113860|ref|NP_708370.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a str. 301] gi|26248899|ref|NP_754939.1| DNA-binding transcriptional regulator IscR [Escherichia coli CFT073] gi|30063921|ref|NP_838092.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a str. 2457T] gi|82544980|ref|YP_408927.1| DNA-binding transcriptional regulator IscR [Shigella boydii Sb227] gi|82777914|ref|YP_404263.1| DNA-binding transcriptional regulator IscR [Shigella dysenteriae Sd197] gi|89109337|ref|AP_003117.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. W3110] gi|91211858|ref|YP_541844.1| DNA-binding transcriptional regulator IscR [Escherichia coli UTI89] gi|110642696|ref|YP_670426.1| DNA-binding transcriptional regulator IscR [Escherichia coli 536] gi|110806462|ref|YP_689982.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 5 str. 8401] gi|117624759|ref|YP_853672.1| DNA-binding transcriptional regulator IscR [Escherichia coli APEC O1] gi|157158615|ref|YP_001463854.1| DNA-binding transcriptional regulator IscR [Escherichia coli E24377A] gi|168748404|ref|ZP_02773426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4113] gi|168761147|ref|ZP_02786154.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4501] gi|168768629|ref|ZP_02793636.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4486] gi|168773549|ref|ZP_02798556.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4196] gi|168778503|ref|ZP_02803510.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4076] gi|168787883|ref|ZP_02812890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC869] gi|168798908|ref|ZP_02823915.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC508] gi|170082141|ref|YP_001731461.1| Fe-S cluster-containing transcription factor [Escherichia coli str. K-12 substr. DH10B] gi|170684046|ref|YP_001744720.1| DNA-binding transcriptional regulator IscR [Escherichia coli SMS-3-5] gi|187732827|ref|YP_001881322.1| DNA-binding transcriptional regulator IscR [Shigella boydii CDC 3083-94] gi|188493127|ref|ZP_03000397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 53638] gi|191172663|ref|ZP_03034202.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli F11] gi|193064097|ref|ZP_03045182.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E22] gi|194427320|ref|ZP_03059870.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B171] gi|194432170|ref|ZP_03064459.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1012] gi|194437555|ref|ZP_03069651.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 101-1] gi|195936677|ref|ZP_03082059.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. EC4024] gi|208809238|ref|ZP_03251575.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4206] gi|208812791|ref|ZP_03254120.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4045] gi|208820582|ref|ZP_03260902.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4042] gi|209399149|ref|YP_002272006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4115] gi|215487881|ref|YP_002330312.1| DNA-binding transcriptional regulator IscR [Escherichia coli O127:H6 str. E2348/69] gi|217326708|ref|ZP_03442791.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. TW14588] gi|218548032|ref|YP_002381823.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii ATCC 35469] gi|218559457|ref|YP_002392370.1| DNA-binding transcriptional regulator IscR [Escherichia coli S88] gi|218690651|ref|YP_002398863.1| DNA-binding transcriptional regulator IscR [Escherichia coli ED1a] gi|218696158|ref|YP_002403825.1| DNA-binding transcriptional regulator IscR [Escherichia coli 55989] gi|218701041|ref|YP_002408670.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI39] gi|218706034|ref|YP_002413553.1| DNA-binding transcriptional regulator IscR [Escherichia coli UMN026] gi|227887567|ref|ZP_04005372.1| transcription regulator [Escherichia coli 83972] gi|237705042|ref|ZP_04535523.1| iscRSUA operon transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|238901696|ref|YP_002927492.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253772573|ref|YP_003035404.1| DNA-binding transcriptional regulator IscR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162505|ref|YP_003045613.1| DNA-binding transcriptional regulator IscR [Escherichia coli B str. REL606] gi|254794481|ref|YP_003079318.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. TW14359] gi|256021784|ref|ZP_05435649.1| DNA-binding transcriptional regulator IscR [Escherichia sp. 4_1_40B] gi|260845161|ref|YP_003222939.1| DNA-binding transcriptional repressor IscR [Escherichia coli O103:H2 str. 12009] gi|261223033|ref|ZP_05937314.1| Fe-S cluster-containing transcription factor [Escherichia coli O157:H7 str. FRIK2000] gi|261259416|ref|ZP_05951949.1| DNA-binding transcriptional repressor IscR [Escherichia coli O157:H7 str. FRIK966] gi|291283756|ref|YP_003500574.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|293405972|ref|ZP_06649964.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1412] gi|293410946|ref|ZP_06654522.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B354] gi|293415799|ref|ZP_06658442.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B185] gi|293446885|ref|ZP_06663307.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B088] gi|297518205|ref|ZP_06936591.1| DNA-binding transcriptional regulator IscR [Escherichia coli OP50] gi|298381773|ref|ZP_06991372.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1302] gi|300898361|ref|ZP_07116707.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 198-1] gi|300904292|ref|ZP_07122150.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 84-1] gi|300920690|ref|ZP_07137098.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 115-1] gi|300927102|ref|ZP_07142852.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 182-1] gi|300930175|ref|ZP_07145593.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 187-1] gi|300940215|ref|ZP_07154815.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 21-1] gi|300951758|ref|ZP_07165577.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 116-1] gi|300958835|ref|ZP_07170946.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 175-1] gi|300982031|ref|ZP_07175853.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 45-1] gi|300998260|ref|ZP_07181948.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 200-1] gi|301022140|ref|ZP_07186063.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 196-1] gi|301024813|ref|ZP_07188450.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 69-1] gi|301047168|ref|ZP_07194261.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 185-1] gi|301302889|ref|ZP_07209017.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 124-1] gi|301330373|ref|ZP_07223018.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 78-1] gi|301648289|ref|ZP_07248030.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 146-1] gi|306814399|ref|ZP_07448561.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101] gi|307139166|ref|ZP_07498522.1| DNA-binding transcriptional regulator IscR [Escherichia coli H736] gi|307313898|ref|ZP_07593514.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|309784715|ref|ZP_07679348.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1617] gi|312965449|ref|ZP_07779681.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 2362-75] gi|331643152|ref|ZP_08344287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H736] gi|331648229|ref|ZP_08349319.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M605] gi|331653965|ref|ZP_08354966.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M718] gi|331658679|ref|ZP_08359623.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA206] gi|331664096|ref|ZP_08365006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA143] gi|331684181|ref|ZP_08384777.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H299] gi|84027939|sp|P0AGL0|ISCR_ECO57 RecName: Full=HTH-type transcriptional regulator iscR gi|84027940|sp|P0AGK9|ISCR_ECOL6 RecName: Full=HTH-type transcriptional regulator iscR gi|84027941|sp|P0AGK8|ISCR_ECOLI RecName: Full=HTH-type transcriptional regulator iscR gi|84027942|sp|P0AGL1|ISCR_SHIFL RecName: Full=HTH-type transcriptional regulator iscR gi|119371148|sp|Q0TEV4|ISCR_ECOL5 RecName: Full=HTH-type transcriptional regulator iscR gi|119371149|sp|Q1R8K1|ISCR_ECOUT RecName: Full=HTH-type transcriptional regulator iscR gi|119371150|sp|Q31XV9|ISCR_SHIBS RecName: Full=HTH-type transcriptional regulator iscR gi|119371151|sp|Q32D33|ISCR_SHIDS RecName: Full=HTH-type transcriptional regulator iscR gi|123342619|sp|Q0T1Y8|ISCR_SHIF8 RecName: Full=HTH-type transcriptional regulator iscR gi|189044743|sp|A7ZPX5|ISCR_ECO24 RecName: Full=HTH-type transcriptional regulator iscR gi|189044745|sp|A1AE68|ISCR_ECOK1 RecName: Full=HTH-type transcriptional regulator iscR gi|226711610|sp|B7MIM1|ISCR_ECO45 RecName: Full=HTH-type transcriptional regulator iscR gi|226711611|sp|B5Z105|ISCR_ECO5E RecName: Full=HTH-type transcriptional regulator iscR gi|226711612|sp|B7NRI0|ISCR_ECO7I RecName: Full=HTH-type transcriptional regulator iscR gi|226711614|sp|B1XB06|ISCR_ECODH RecName: Full=HTH-type transcriptional regulator iscR gi|226711615|sp|B7N6B8|ISCR_ECOLU RecName: Full=HTH-type transcriptional regulator iscR gi|226711617|sp|B1LNI7|ISCR_ECOSM RecName: Full=HTH-type transcriptional regulator iscR gi|226711619|sp|B7LJQ3|ISCR_ESCF3 RecName: Full=HTH-type transcriptional regulator iscR gi|226711629|sp|B2TXV6|ISCR_SHIB3 RecName: Full=HTH-type transcriptional regulator iscR gi|254806053|sp|B7UGX7|ISCR_ECO27 RecName: Full=HTH-type transcriptional regulator iscR gi|254806054|sp|B7LDC3|ISCR_ECO55 RecName: Full=HTH-type transcriptional regulator iscR gi|254806055|sp|B7MYG4|ISCR_ECO81 RecName: Full=HTH-type transcriptional regulator iscR gi|259493873|sp|C4ZXA6|ISCR_ECOBW RecName: Full=HTH-type transcriptional regulator iscR gi|12516935|gb|AAG57645.1|AE005483_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26109305|gb|AAN81507.1|AE016764_189 Hypothetical protein yfhP [Escherichia coli CFT073] gi|1788880|gb|AAC75584.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|1799939|dbj|BAA16425.1| DNA-binding transcriptional activator [Escherichia coli str. K12 substr. W3110] gi|13362868|dbj|BAB36820.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24052954|gb|AAN44077.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042177|gb|AAP17902.1| hypothetical protein S2750 [Shigella flexneri 2a str. 2457T] gi|81242062|gb|ABB62772.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81246391|gb|ABB67099.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91073432|gb|ABE08313.1| iscRSUA operon transcriptional regulator [Escherichia coli UTI89] gi|110344288|gb|ABG70525.1| hypothetical protein YfhP [Escherichia coli 536] gi|110616010|gb|ABF04677.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115513883|gb|ABJ01958.1| DNA-binding transcriptional repressor [Escherichia coli APEC O1] gi|157080645|gb|ABV20353.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E24377A] gi|169889976|gb|ACB03683.1| Fe-S cluster-containing transcription factor [Escherichia coli str. K-12 substr. DH10B] gi|170521764|gb|ACB19942.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli SMS-3-5] gi|187429819|gb|ACD09093.1| iron-sulfur cluster assembly transcription factor IscR [Shigella boydii CDC 3083-94] gi|187770671|gb|EDU34515.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4196] gi|188017096|gb|EDU55218.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4113] gi|188488326|gb|EDU63429.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 53638] gi|189003523|gb|EDU72509.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4076] gi|189362292|gb|EDU80711.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4486] gi|189368435|gb|EDU86851.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4501] gi|189372323|gb|EDU90739.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC869] gi|189378593|gb|EDU97009.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC508] gi|190907136|gb|EDV66736.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli F11] gi|192929332|gb|EDV82941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E22] gi|194414641|gb|EDX30913.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B171] gi|194419699|gb|EDX35779.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1012] gi|194423361|gb|EDX39352.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 101-1] gi|208729039|gb|EDZ78640.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4206] gi|208734068|gb|EDZ82755.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4045] gi|208740705|gb|EDZ88387.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4042] gi|209160549|gb|ACI37982.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4115] gi|209763228|gb|ACI79926.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763230|gb|ACI79927.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763232|gb|ACI79928.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763234|gb|ACI79929.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763236|gb|ACI79930.1| hypothetical protein ECs3397 [Escherichia coli] gi|215265953|emb|CAS10362.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6 str. E2348/69] gi|217319075|gb|EEC27500.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. TW14588] gi|218352890|emb|CAU98689.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218355573|emb|CAQ88185.1| DNA-binding transcriptional repressor [Escherichia fergusonii ATCC 35469] gi|218366226|emb|CAR03973.1| DNA-binding transcriptional repressor [Escherichia coli S88] gi|218371027|emb|CAR18854.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218428215|emb|CAR09130.2| DNA-binding transcriptional repressor [Escherichia coli ED1a] gi|218433131|emb|CAR14027.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|222034242|emb|CAP76983.1| HTH-type transcriptional regulator iscR [Escherichia coli LF82] gi|226901408|gb|EEH87667.1| iscRSUA operon transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|227835917|gb|EEJ46383.1| transcription regulator [Escherichia coli 83972] gi|238860965|gb|ACR62963.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242378131|emb|CAQ32904.1| IscR transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253323617|gb|ACT28219.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974406|gb|ACT40077.1| DNA-binding transcriptional repressor [Escherichia coli B str. REL606] gi|253978573|gb|ACT44243.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|254593881|gb|ACT73242.1| Fe-S cluster-containing transcription factor [Escherichia coli O157:H7 str. TW14359] gi|257760308|dbj|BAI31805.1| DNA-binding transcriptional repressor IscR [Escherichia coli O103:H2 str. 12009] gi|260448389|gb|ACX38811.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1] gi|281179585|dbj|BAI55915.1| conserved hypothetical protein [Escherichia coli SE15] gi|281601934|gb|ADA74918.1| HTH-type transcriptional regulator iscR [Shigella flexneri 2002017] gi|284922481|emb|CBG35568.1| transcriptional regulator [Escherichia coli 042] gi|290763629|gb|ADD57590.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|291323715|gb|EFE63143.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B088] gi|291428180|gb|EFF01207.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1412] gi|291433447|gb|EFF06426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B185] gi|291471414|gb|EFF13898.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B354] gi|294489645|gb|ADE88401.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli IHE3034] gi|298279215|gb|EFI20729.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1302] gi|299881341|gb|EFI89552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 196-1] gi|300300916|gb|EFJ57301.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 185-1] gi|300304032|gb|EFJ58552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 200-1] gi|300314520|gb|EFJ64304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 175-1] gi|300357946|gb|EFJ73816.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 198-1] gi|300396344|gb|EFJ79882.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 69-1] gi|300403750|gb|EFJ87288.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 84-1] gi|300408859|gb|EFJ92397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 45-1] gi|300412338|gb|EFJ95648.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 115-1] gi|300416906|gb|EFK00217.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 182-1] gi|300449042|gb|EFK12662.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 116-1] gi|300454971|gb|EFK18464.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 21-1] gi|300461935|gb|EFK25428.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 187-1] gi|300841824|gb|EFK69584.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 124-1] gi|300843633|gb|EFK71393.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 78-1] gi|301073640|gb|EFK88446.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 146-1] gi|305851793|gb|EFM52245.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101] gi|306906399|gb|EFN36914.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|307554554|gb|ADN47329.1| iscRSUA operon transcriptional regulator [Escherichia coli ABU 83972] gi|307625914|gb|ADN70218.1| DNA-binding transcriptional regulator IscR [Escherichia coli UM146] gi|308927085|gb|EFP72559.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1617] gi|309702863|emb|CBJ02194.1| transcriptional regulator [Escherichia coli ETEC H10407] gi|312289869|gb|EFR17757.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 2362-75] gi|312947108|gb|ADR27935.1| DNA-binding transcriptional regulator IscR [Escherichia coli O83:H1 str. NRG 857C] gi|313651020|gb|EFS15420.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri 2a str. 2457T] gi|315061850|gb|ADT76177.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315137155|dbj|BAJ44314.1| DNA-binding transcriptional repressor [Escherichia coli DH1] gi|315256552|gb|EFU36520.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 85-1] gi|315288054|gb|EFU47456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 110-3] gi|315292493|gb|EFU51845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 153-1] gi|315300496|gb|EFU59725.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 16-3] gi|315615792|gb|EFU96424.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 3431] gi|320180526|gb|EFW55457.1| Iron-sulfur cluster regulator IscR [Shigella boydii ATCC 9905] gi|320186422|gb|EFW61152.1| Iron-sulfur cluster regulator IscR [Shigella flexneri CDC 796-83] gi|320188870|gb|EFW63529.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str. EC1212] gi|320196372|gb|EFW70996.1| Iron-sulfur cluster regulator IscR [Escherichia coli WV_060327] gi|320640879|gb|EFX10367.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. G5101] gi|320646322|gb|EFX15249.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H- str. 493-89] gi|320651502|gb|EFX19889.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H- str. H 2687] gi|320657213|gb|EFX25022.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667623|gb|EFX34538.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. LSU-61] gi|323159301|gb|EFZ45287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E128010] gi|323170194|gb|EFZ55847.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli LT-68] gi|323188349|gb|EFZ73641.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli RN587/1] gi|323377569|gb|ADX49837.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11] gi|323936424|gb|EGB32714.1| iron-sulfur cluster assembly transcription protein IscR [Escherichia coli E1520] gi|323949191|gb|EGB45082.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli H252] gi|323955772|gb|EGB51530.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli H263] gi|323961347|gb|EGB56959.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli H489] gi|323967979|gb|EGB63391.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli M863] gi|323971055|gb|EGB66303.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli TA007] gi|323977286|gb|EGB72372.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli TW10509] gi|324008494|gb|EGB77713.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 57-2] gi|324011237|gb|EGB80456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 60-1] gi|324113025|gb|EGC07001.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia fergusonii B253] gi|324118259|gb|EGC12155.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli E1167] gi|325496436|gb|EGC94295.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii ECD227] gi|326340335|gb|EGD64139.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str. 1125] gi|326345019|gb|EGD68763.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str. 1044] gi|327252239|gb|EGE63911.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli STEC_7v] gi|330912307|gb|EGH40817.1| iron-sulfur cluster regulator IscR [Escherichia coli AA86] gi|331039950|gb|EGI12170.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H736] gi|331043089|gb|EGI15229.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M605] gi|331048814|gb|EGI20890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M718] gi|331054344|gb|EGI26371.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA206] gi|331059895|gb|EGI31872.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA143] gi|331079133|gb|EGI50335.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H299] gi|332087982|gb|EGI93107.1| iron-sulfur cluster assembly transcription factor IscR [Shigella boydii 5216-82] gi|332089837|gb|EGI94938.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 155-74] gi|332092768|gb|EGI97837.1| iron-sulfur cluster assembly transcription factor IscR [Shigella boydii 3594-74] gi|332344406|gb|AEE57740.1| iron-sulfur cluster assembly transcription factor protein IscR [Escherichia coli UMNK88] gi|332754063|gb|EGJ84434.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri 4343-70] gi|332754140|gb|EGJ84509.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-671] gi|332756387|gb|EGJ86738.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri 2747-71] gi|333000511|gb|EGK20090.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri VA-6] gi|333000908|gb|EGK20479.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-218] gi|333002329|gb|EGK21893.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-272] gi|333016152|gb|EGK35484.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-227] gi|333016465|gb|EGK35796.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-304] Length = 162 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86 >gi|197251434|ref|YP_002147499.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226711621|sp|B5F1C1|ISCR_SALA4 RecName: Full=HTH-type transcriptional regulator iscR gi|197215137|gb|ACH52534.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 164 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|120611113|ref|YP_970791.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|326317578|ref|YP_004235250.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120589577|gb|ABM33017.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli AAC00-1] gi|323374414|gb|ADX46683.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 178 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A IT+ D++ + +E +C K +C +G G +T L +LN Sbjct: 61 PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116 Query: 118 ----FFDVLT 123 F D +T Sbjct: 117 RMVEFLDSVT 126 >gi|146283373|ref|YP_001173526.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas stutzeri A1501] gi|145571578|gb|ABP80684.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas stutzeri A1501] Length = 183 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 21 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + V+ A ES C Sbjct: 81 PGGGYQLSRDMAGIQVAQVIDAVNESVDATRC 112 >gi|157828607|ref|YP_001494849.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933321|ref|YP_001650110.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] gi|229586808|ref|YP_002845309.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia africae ESF-5] gi|238650793|ref|YP_002916648.1| Rrf2 family protein [Rickettsia peacockii str. Rustic] gi|157801088|gb|ABV76341.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908408|gb|ABY72704.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] gi|228021858|gb|ACP53566.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia africae ESF-5] gi|238624891|gb|ACR47597.1| Rrf2 family protein [Rickettsia peacockii str. Rustic] Length = 139 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + P +++++ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 +GG L ++I I D++ A E+F + C+ Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCY 93 >gi|294852949|ref|ZP_06793621.1| transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294818604|gb|EFG35604.1| transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 166 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIAC 114 >gi|161502301|ref|YP_001569413.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189044750|sp|A9MHJ3|ISCR_SALAR RecName: Full=HTH-type transcriptional regulator iscR gi|160863648|gb|ABX20271.1| hypothetical protein SARI_00332 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 164 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|256158354|ref|ZP_05456254.1| RfF2 family protein [Brucella ceti M490/95/1] gi|256252715|ref|ZP_05458251.1| RfF2 family protein [Brucella ceti B1/94] gi|260166777|ref|ZP_05753588.1| RfF2 family protein [Brucella sp. F5/99] gi|261219794|ref|ZP_05934075.1| transcriptional regulator [Brucella ceti B1/94] gi|261756154|ref|ZP_05999863.1| RRF2 family protein [Brucella sp. F5/99] gi|265996865|ref|ZP_06109422.1| transcriptional regulator [Brucella ceti M490/95/1] gi|260918378|gb|EEX85031.1| transcriptional regulator [Brucella ceti B1/94] gi|261736138|gb|EEY24134.1| RRF2 family protein [Brucella sp. F5/99] gi|262551162|gb|EEZ07323.1| transcriptional regulator [Brucella ceti M490/95/1] Length = 143 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91 >gi|237732511|ref|ZP_04562992.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2] gi|283832088|ref|ZP_06351829.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter youngae ATCC 29220] gi|226908050|gb|EEH93968.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2] gi|291071714|gb|EFE09823.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter youngae ATCC 29220] Length = 163 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|261340842|ref|ZP_05968700.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacter cancerogenus ATCC 35316] gi|288317268|gb|EFC56206.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacter cancerogenus ATCC 35316] Length = 163 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|311278538|ref|YP_003940769.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] gi|308747733|gb|ADO47485.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] Length = 163 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|296158336|ref|ZP_06841167.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] gi|295891280|gb|EFG71067.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] Length = 176 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+ +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92 >gi|283786146|ref|YP_003366011.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282949600|emb|CBG89219.1| transcriptional regulator [Citrobacter rodentium ICC168] Length = 163 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|225871965|ref|YP_002753419.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196] gi|225791981|gb|ACO32071.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196] Length = 145 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R G+ ++ A D IA + + + ++ L AG+V++ +G Sbjct: 1 MAVNTRFATGVHAMVLLAAEPDTLQTSETIAGRLETNPVVVRRVFSLLHHAGLVDSHKGP 60 Query: 61 RGGVRLCRPADQITILDVVKA--TEESFFVAECFAS 94 GG +L RPA QIT+ D+ KA T + F AE FAS Sbjct: 61 SGGSKLARPAKQITLADIYKALDTGDLFHTAE-FAS 95 >gi|313672780|ref|YP_004050891.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939536|gb|ADR18728.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 144 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + K DY IR++ Y + D ++ +I+E IS+ KIL L K GI++T G+ G Sbjct: 4 VKKEVDYAIRIIAYL-LGKDNLVKMEEISEKLFISQPNTIKILHKLSKCGIIKTKTGKNG 62 Query: 63 GVRLCRPADQITILDVV 79 G+ L + ++I D++ Sbjct: 63 GIILKKEVIDLSIYDIL 79 >gi|310819041|ref|YP_003951399.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309392113|gb|ADO69572.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca DW4/3-1] Length = 152 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 TDYG+ +L A ++AE + + K+L+ L AG++ + RG GG L Sbjct: 2 TDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAMGGYGL 61 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 RPA I + V+ A E + C H P SC L SV R + + V+ Q Sbjct: 62 ARPAAAIPLTQVISALEGPVAITACV-QHTDGEP---SCELESVCR--IRGHWRVINQAI 115 Query: 127 IECLVR 132 E L R Sbjct: 116 QEALGR 121 >gi|146312669|ref|YP_001177743.1| DNA-binding transcriptional regulator IscR [Enterobacter sp. 638] gi|189044747|sp|A4WDB2|ISCR_ENT38 RecName: Full=HTH-type transcriptional regulator iscR gi|145319545|gb|ABP61692.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638] Length = 163 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|167647686|ref|YP_001685349.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167350116|gb|ABZ72851.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 146 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 5/129 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ Y +R ++ A + ++A FL IL L + G+V + RG+ G Sbjct: 2 LSQKARYALRAMIELARESGQVT-AGELAVRADAPRKFLEAILLTLARQGLVTSRRGKFG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118 G L R DQI+ ++++ + + C + DC + +C L L +A +A Sbjct: 61 GYLLGRGPDQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120 Query: 119 FDVLTQYSI 127 VL YS+ Sbjct: 121 AAVLEGYSL 129 >gi|294637705|ref|ZP_06715982.1| iron-sulfur cluster assembly transcription factor IscR [Edwardsiella tarda ATCC 23685] gi|291089135|gb|EFE21696.1| iron-sulfur cluster assembly transcription factor IscR [Edwardsiella tarda ATCC 23685] Length = 177 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 13 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + V+ A +ES Sbjct: 73 PGGGYLLGKDAADIAVGAVITAVDES 98 >gi|170694738|ref|ZP_02885889.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] gi|170140369|gb|EDT08546.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] Length = 176 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+ +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92 >gi|296135538|ref|YP_003642780.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] gi|294339667|emb|CAZ88027.1| HTH-type transcriptional regulator iscR [Thiomonas sp. 3As] gi|295795660|gb|ADG30450.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] Length = 178 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDVAMRQHLGPVTLAGISQRQHISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L R +++I+I D++ A +E +C + G C +T L LNA Sbjct: 61 PGGGYTLSRKSEEISIADIIIAVDEPLDATQCGGKENCNGEDNGPC-MTHDLWAQLNAKM 119 Query: 119 FDVLTQYSIECLVR 132 + L +++ LV Sbjct: 120 VEFLDSVNLKGLVE 133 >gi|209519995|ref|ZP_03268774.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] gi|209499592|gb|EDZ99668.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] Length = 176 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+ +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92 >gi|312962917|ref|ZP_07777404.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens WH6] gi|311282944|gb|EFQ61538.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens WH6] Length = 225 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 63 MRLTTKGRYAVTAMLDLALHAQAGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + V+ A ES +C Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKC 154 >gi|91784249|ref|YP_559455.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688203|gb|ABE31403.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia xenovorans LB400] Length = 176 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+ +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92 >gi|62317939|ref|YP_223792.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941] gi|254691631|ref|ZP_05154885.1| RfF2 family protein [Brucella abortus bv. 6 str. 870] gi|254695073|ref|ZP_05156901.1| RfF2 family protein [Brucella abortus bv. 3 str. Tulya] gi|254698170|ref|ZP_05159998.1| RfF2 family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699245|ref|ZP_05161073.1| RfF2 family protein [Brucella suis bv. 5 str. 513] gi|254711200|ref|ZP_05173011.1| RfF2 family protein [Brucella pinnipedialis B2/94] gi|254711800|ref|ZP_05173611.1| RfF2 family protein [Brucella ceti M644/93/1] gi|254714868|ref|ZP_05176679.1| RfF2 family protein [Brucella ceti M13/05/1] gi|254731614|ref|ZP_05190192.1| RfF2 family protein [Brucella abortus bv. 4 str. 292] gi|256030172|ref|ZP_05443786.1| RfF2 family protein [Brucella pinnipedialis M292/94/1] gi|256059824|ref|ZP_05450018.1| RfF2 family protein [Brucella neotomae 5K33] gi|256112195|ref|ZP_05453116.1| RfF2 family protein [Brucella melitensis bv. 3 str. Ether] gi|256256818|ref|ZP_05462354.1| RfF2 family protein [Brucella abortus bv. 9 str. C68] gi|260544123|ref|ZP_05819944.1| RRF2 family protein [Brucella abortus NCTC 8038] gi|260564084|ref|ZP_05834569.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|260759374|ref|ZP_05871722.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762617|ref|ZP_05874949.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|261215425|ref|ZP_05929706.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261216557|ref|ZP_05930838.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261313970|ref|ZP_05953167.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261318791|ref|ZP_05957988.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261319428|ref|ZP_05958625.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261323803|ref|ZP_05963000.1| transcriptional regulator [Brucella neotomae 5K33] gi|261749683|ref|ZP_05993392.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|265987202|ref|ZP_06099759.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265993622|ref|ZP_06106179.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|62198132|gb|AAX76431.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941] gi|260097394|gb|EEW81268.1| RRF2 family protein [Brucella abortus NCTC 8038] gi|260151727|gb|EEW86820.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|260669692|gb|EEX56632.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673038|gb|EEX59859.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260917032|gb|EEX83893.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921646|gb|EEX88214.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261292118|gb|EEX95614.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261298014|gb|EEY01511.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261299783|gb|EEY03280.1| transcriptional regulator [Brucella neotomae 5K33] gi|261302996|gb|EEY06493.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739436|gb|EEY27362.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262764492|gb|EEZ10524.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|264659399|gb|EEZ29660.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|326411283|gb|ADZ68347.1| RRF2 family protein [Brucella melitensis M28] gi|326554572|gb|ADZ89211.1| RRF2 family protein [Brucella melitensis M5-90] Length = 143 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91 >gi|152971394|ref|YP_001336503.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895988|ref|YP_002920724.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae NTUH-K2044] gi|262040270|ref|ZP_06013521.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007731|ref|ZP_08306057.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. MS 92-3] gi|189044749|sp|A6TCF2|ISCR_KLEP7 RecName: Full=HTH-type transcriptional regulator iscR gi|150956243|gb|ABR78273.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548306|dbj|BAH64657.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042379|gb|EEW43399.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535344|gb|EGF61827.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. MS 92-3] Length = 163 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|126641870|ref|YP_001084854.1| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978] gi|213157474|ref|YP_002319519.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|215483319|ref|YP_002325530.1| Transcriptional regulator family protein [Acinetobacter baumannii AB307-0294] gi|239504201|ref|ZP_04663511.1| putative transcriptional regulator [Acinetobacter baumannii AB900] gi|213056634|gb|ACJ41536.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|213986810|gb|ACJ57109.1| Transcriptional regulator family protein [Acinetobacter baumannii AB307-0294] Length = 141 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91 + KI L KAG+V G RGG L R A +I+ LD+V A E + EC Sbjct: 1 MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60 Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 F + D G C + +V+ +A A D L +++ Sbjct: 61 FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 96 >gi|187924557|ref|YP_001896199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Burkholderia phytofirmans PsJN] gi|187715751|gb|ACD16975.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phytofirmans PsJN] Length = 176 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+ +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92 >gi|322389974|ref|ZP_08063513.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321143287|gb|EFX38726.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 149 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ + S +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG L + +D+I++LD+ +A E + F H P Sbjct: 61 T-GGAELAKASDEISLLDIYQAVECLGSTGQLFGFHDNPNP 100 >gi|17988524|ref|NP_541157.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|17984317|gb|AAL53421.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M] Length = 162 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 21 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 80 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 81 GGFCLAHPASEIAIGNIIRALDGALAPIAC 110 >gi|229505639|ref|ZP_04395149.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286] gi|229510689|ref|ZP_04400168.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33] gi|229513114|ref|ZP_04402580.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21] gi|229517811|ref|ZP_04407255.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9] gi|229525393|ref|ZP_04414798.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis VL426] gi|229530123|ref|ZP_04419513.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)] gi|229608657|ref|YP_002879305.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236] gi|229333897|gb|EEN99383.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)] gi|229338974|gb|EEO03991.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis VL426] gi|229344526|gb|EEO09500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9] gi|229350007|gb|EEO14961.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21] gi|229350654|gb|EEO15595.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33] gi|229357862|gb|EEO22779.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286] gi|229371312|gb|ACQ61735.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236] Length = 160 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 4/105 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 I+I V+ A +ES +C + K DC C LT L + L++ Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 102 >gi|197119432|ref|YP_002139859.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088792|gb|ACH40063.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 162 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 17/143 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L Y + I +AE ++ +L KI L K GIV +V G Sbjct: 1 MQFSVGVEYALHSLFYLVNVPEGKTVGIRHLAELHGSTDSYLSKIFAKLRKTGIVRSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------CPLVGSCGL 107 +GG L R + I+ D+++A E + +C K + CP C + Sbjct: 61 VKGGYELARLPEAISFWDIIEAVEGPSYFFQCNEMRKKNIFVSDPSIFTDRCP----CLI 116 Query: 108 TSVLRKALNAFFDVLTQYSIECL 130 V++ A N F + L S+ L Sbjct: 117 KVVIQDAENVFRNELRNKSLRWL 139 >gi|229592453|ref|YP_002874572.1| hypothetical protein PFLU5069 [Pseudomonas fluorescens SBW25] gi|229364319|emb|CAY52066.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 225 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 63 MRLTTKGRYAVTAMLDLALHAQTGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R I + V+ A ES +C Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKC 154 >gi|41408581|ref|NP_961417.1| hypothetical protein MAP2483c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396939|gb|AAS04800.1| hypothetical protein MAP_2483c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 161 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 R GG L RP I+I DV++ + D P G + LT V R + Sbjct: 61 REGGYELARPGKDISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118 Query: 119 FDVLTQYSI 127 VL + ++ Sbjct: 119 RSVLEETTL 127 >gi|306820775|ref|ZP_07454400.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551165|gb|EFM39131.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 131 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 44/95 (46%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L Y + + S ++E I F KIL+ L GI + RG Sbjct: 1 MRITQETDYALRILDYLSATDKEIVGASVLSEDLNIPVRFALKILRKLNLYGITKANRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 GG L + I VV+A E ++ +C Sbjct: 61 SGGYFLLMKPEDINYKMVVEAIEGEIYINKCLQDR 95 >gi|161621161|ref|YP_001595047.1| rrf2 family protein [Brucella canis ATCC 23365] gi|163845438|ref|YP_001623093.1| Rrf2 family transcriptional regulator protein [Brucella suis ATCC 23445] gi|161337972|gb|ABX64276.1| rrf2 family protein [Brucella canis ATCC 23365] gi|163676161|gb|ABY40271.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC 23445] Length = 166 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 85 GGFCLTHPASEIAIGNIIRALDGALAPIAC 114 >gi|186476217|ref|YP_001857687.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum STM815] gi|184192676|gb|ACC70641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum STM815] Length = 174 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A+ +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92 >gi|305664587|ref|YP_003860874.1| BadM/Rrf2 family transcriptional regulator [Maribacter sp. HTCC2170] gi|88708604|gb|EAR00840.1| transcriptional regulator, BadM/Rrf2 family protein [Maribacter sp. HTCC2170] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L + A N P +I++IA IS+ FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGLKALTFLASQENRQPVQIAEIARNENISQKFLESILLSLRKTGILGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + I + DV++ E + C F DCP +C + ++ + ++ Sbjct: 62 GGYYLIKEPKDILMTDVMRILEGPIAMVPCVSLNFYERCEDCPDEKTCSVHKLMLQVRDS 121 Query: 118 FFDVLTQYSIECLVR 132 ++ ++ L++ Sbjct: 122 ALEIYRNNTLADLIK 136 >gi|327402275|ref|YP_004343113.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317783|gb|AEA42275.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis DSM 16823] Length = 139 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y + L Y A + P I +I+E I FL IL L K GI+ + G+ Sbjct: 2 LSKKTKYALHALTYLAKKEANEPTLILEISENGHIPRKFLESILLDLKKQGILNSKMGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + +I I +++ + C + + +C +CGL V N Sbjct: 62 GGYFLRQTPTEIQISTIIRLFNGPIALLPCVSLNYYQRCDECTDEKTCGLNKVFIDVRNE 121 Query: 118 FFDVLTQYSIECLV 131 +L SI+ +V Sbjct: 122 TLRILENKSIQDIV 135 >gi|261885524|ref|ZP_06009563.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 123 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + I++ +S+ +L ++L L G V +++G +GG L + D+IT D+ A E Sbjct: 12 PVSLKDISQNIGVSKNYLEQVLNTLRNTGFVSSIKGLKGGYFLNKTLDEITFYDIFYALE 71 Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 F + H LT + K L++F + +Q Sbjct: 72 NDFGLTSLNVEHSSYNLFFKEYNEKLTELFSKPLSSFKEYHSQ 114 >gi|229154646|ref|ZP_04282763.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] gi|228629044|gb|EEK85754.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] Length = 137 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +SE FL K+ L KA IV +V G +GG RL + + I+ DV++A E + Sbjct: 1 MAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIF 60 Query: 90 EC 91 +C Sbjct: 61 QC 62 >gi|157144531|ref|YP_001451850.1| DNA-binding transcriptional regulator IscR [Citrobacter koseri ATCC BAA-895] gi|189044742|sp|A8AD51|ISCR_CITK8 RecName: Full=HTH-type transcriptional regulator iscR gi|157081736|gb|ABV11414.1| hypothetical protein CKO_00250 [Citrobacter koseri ATCC BAA-895] Length = 163 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG L + A I + +V+ A +ES Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86 >gi|254786630|ref|YP_003074059.1| iron-sulfur cluster assembly transcription factor IscR [Teredinibacter turnerae T7901] gi|237686389|gb|ACR13653.1| iron-sulfur cluster assembly transcription factor IscR [Teredinibacter turnerae T7901] Length = 164 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQRGPVSLADISKRQGISLSYLEQLFAKLRQNALVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R A ++ + +V A ES C Sbjct: 61 PGGGYKLSREASELFVAQIVDAVNESIDATSC 92 >gi|313905574|ref|ZP_07838937.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469637|gb|EFR64976.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 131 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 9 YGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 Y +RV++ A + D + IAE IS+ +L I + +V+ ++ G+ GG RL Sbjct: 8 YALRVMIDLAQQDSDDFVPLKDIAERQDISKKYLEIIAKEMVRGKLIVGASGKHGGYRLV 67 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125 R ++ ++ +V+ E +F C A + +CP C S+ ++ F+++ ++ Sbjct: 68 RRPEEYSVGEVIDLMEGTFAPVVCLACNAEECPRADKCKTLSMWKE----FYEIEKEF 121 >gi|227539117|ref|ZP_03969166.1| rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241067|gb|EEI91082.1| rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 142 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ LM + P +I +IA+ I + FL +IL + AGI+ + +G Sbjct: 2 LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + V++ + + C F +C CG+ NA Sbjct: 62 GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L SI L+ + Sbjct: 122 MLQILNDTSIAHLINKEKEL 141 >gi|255532922|ref|YP_003093294.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM 2366] gi|255345906|gb|ACU05232.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM 2366] Length = 155 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T + +YG+R+L+ H D+ + IS I+EA +S ++ K+ + L AG + + Sbjct: 1 MKITAQEEYGLRILLRIGRH-DHGDGISIPAISEAEGLSGAYVAKLTRILRMAGYINSTP 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87 G +GG L + A QI I V+K + + Sbjct: 60 GNKGGYVLAQTAGQININQVMKVLGGALY 88 >gi|227820042|ref|YP_002824013.1| Rrf2 family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36958592|gb|AAQ87060.1| probable RF2 family protein [Sinorhizobium fredii NGR234] gi|227339041|gb|ACP23260.1| putative Rrf2 family transcriptional regulator protein [Sinorhizobium fredii NGR234] Length = 162 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +AG+V T G GG RL R + Sbjct: 14 CAILAGLPEGRYLSTKSLAEFHGVPKEYLSKALQSLSQAGLVHTTLGPSGGYRLARKPAE 73 Query: 73 ITILDVVKATE 83 +T LD+V+A E Sbjct: 74 LTFLDIVEAVE 84 >gi|219847295|ref|YP_002461728.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541554|gb|ACL23292.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus aggregans DSM 9485] Length = 146 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R + A H + P + IA I +L ++L L +AG+VE++RG Sbjct: 1 MRISSKGEYGLRAVFDLAQHYGEGPIQSESIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L R + I++L+V+ E E Sbjct: 61 PQGGHLLARSPETISLLEVLTVLEGPILPTE 91 >gi|229020328|ref|ZP_04177094.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] gi|229026559|ref|ZP_04182908.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228734736|gb|EEL85381.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228740964|gb|EEL91196.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] Length = 157 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87 +++ +S +L K+++ LV+AG+V +V G +GG RL ++I I DV A E ES + Sbjct: 29 LSQQLHVSPTYLQKLMRKLVRAGLVSSVPGVKGGFRLQAVPEKIRIYDVYIAVEGLESLY 88 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 + +C L+ V+ +A A+ +L + +I L Sbjct: 89 RSNGIFHTMFQLKENTTCLLSDVMEEAEYAWKSILKRTTIASL 131 >gi|313898097|ref|ZP_07831636.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] gi|312957125|gb|EFR38754.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] Length = 137 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y + ++ A N I IA+A S +L +I + L KA ++ ++RG+ Sbjct: 1 MKISTKGIYALEAMIELASRNTACVSIRDIADARNCSVKYLEQIFKQLKKAQLLISIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG ++ + ++IT D++ A EE C SH C G C V + Sbjct: 61 DGGYQIAKDPEEITAKDIILAVEEKLDPVVCL-SHT--CTRSGICRTQPVWMGMQEQIYK 117 Query: 121 VLTQYSIECLV---RNRSS 136 VL +++ L RN S Sbjct: 118 VLESKTLKYLTDIYRNEVS 136 >gi|300770623|ref|ZP_07080502.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300763099|gb|EFK59916.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 147 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ LM + P +I +IA+ I + FL +IL + AGI+ + +G Sbjct: 2 LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + V++ + + C F +C CG+ NA Sbjct: 62 GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L SI L+ + Sbjct: 122 MLQILNDTSIAHLINKEKEL 141 >gi|222085200|ref|YP_002543730.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722648|gb|ACM25804.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 148 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALSALAQAEAGEPTMISDIATQQKIPKKFLEQILLDLKHQGIVISRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA++IT ++++ + C + DC +C + V + +A Sbjct: 62 GGYLLRKPAEEITFGEILRIIDGPIAPLPCLSITAYRRCEDCDGEQTCEIRHVFARVADA 121 Query: 118 FFDVLTQYSI 127 VL +I Sbjct: 122 TRKVLFSTTI 131 >gi|171320031|ref|ZP_02909102.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] gi|171094724|gb|EDT39767.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] Length = 179 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C +T L LN Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 120 KMVEYLDSVSLQDLV 134 >gi|119513040|ref|ZP_01632097.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia spumigena CCY9414] gi|119462320|gb|EAW43300.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia spumigena CCY9414] Length = 147 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA I +L K+L + +AG+V ++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPGYGPASVRSIALRQDIPAPYLEKLLIEMRRAGLVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG +L QI+I +++A E+ H P +T L + LN Sbjct: 61 SIGGYQLALKPAQISIGQILEAVGETI----TRLPHHTPTPAQTEDWVTFTLWQRLN 113 >gi|288573879|ref|ZP_06392236.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569620|gb|EFC91177.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 159 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 2/106 (1%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 RI ++A+A SE + K+ Q LV+AG+V +VRG GG L + +I++ V +A E Sbjct: 29 RIREMAKAVEASEAHMAKVFQRLVRAGLVGSVRGPAGGFELLKKPSEISLYVVYRAIEGD 88 Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 C CP C + F D L S+ LV Sbjct: 89 LRPKSCVLGLS-RCPFR-ECMFGDFPNRVYEEFTDHLKSRSLGELV 132 >gi|189499610|ref|YP_001959080.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] gi|189495051|gb|ACE03599.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 20/145 (13%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+ ++ A + +I QI E I + +L +I LVK +V++VRG + Sbjct: 4 LSAKAHYGLAAMLDLADNFGKQRLQIRQIVEKRGIPKNYLEQIFNRLVKNALVKSVRGNK 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R +T+ +++A E E + H T +R+ D+ Sbjct: 64 GGYELARSPSSLTVFSILEALEGKL---EIVSDHD-----------TKAMRQTFGNLEDL 109 Query: 122 LTQY---SIECLV--RNRSSIKKIF 141 + +Y ++E L+ R S K+I+ Sbjct: 110 VMEYFSMTLEELIVQEKRFSQKQIY 134 >gi|108760111|ref|YP_629412.1| Rrf2 family protein [Myxococcus xanthus DK 1622] gi|108463991|gb|ABF89176.1| Rrf2 family protein [Myxococcus xanthus DK 1622] Length = 172 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K TDYGI ++ A ++A + K+L+ L++A +V + RG Sbjct: 2 LRMSKMTDYGIVLMTELARAEGDTRTTRELAARTRVPLPSASKVLKSLLQAALVVSHRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L RPA ++ + ++V A E + EC S C L C + R +A Sbjct: 62 NGGYGLARPAHELPLAELVTALEGPVALTECGVHTSGGAPCELESVCQVRGHWRLINDAI 121 Query: 119 FDVLTQYSIECLV 131 + L + ++ L+ Sbjct: 122 QEALGRLTLADLI 134 >gi|254702363|ref|ZP_05164191.1| Rrf2 family transcriptional regulator protein [Brucella suis bv. 3 str. 686] gi|260568733|ref|ZP_05839202.1| RRF2 family protein [Brucella suis bv. 4 str. 40] gi|261752927|ref|ZP_05996636.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|54112367|gb|AAN34279.2| RrF2 family protein [Brucella suis 1330] gi|260155398|gb|EEW90479.1| RRF2 family protein [Brucella suis bv. 4 str. 40] gi|261742680|gb|EEY30606.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 143 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 62 GGFCLTHPASEIAIGNIIRALDGALAPIAC 91 >gi|83593906|ref|YP_427658.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576820|gb|ABC23371.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 154 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + K TDY + VL+ D QIA + + K+++ LV+ +V + RG Sbjct: 3 RINKLTDYAV-VLLVDMARTDKVRAAQQIACDTGVPLPTVAKVMKALVRGNLVISQRGAT 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 GG L RPA +IT+ D+++A E + C + C L C + Sbjct: 62 GGYGLARPACEITVADMIQALEGPVALTACVETTDDACGLETLCPM 107 >gi|71083441|ref|YP_266160.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91762136|ref|ZP_01264101.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71062554|gb|AAZ21557.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717938|gb|EAS84588.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 141 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + L A N P + I+ IS FL +I L K IV+++RG Sbjct: 1 MKLTSKGRYAVMALADLAKFNSVNPVSLRDISLRQGISLDFLEQIFSKLKKYNIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL---- 115 GG L + ++I + +++ A +E +C K C + +T L L Sbjct: 61 TNGGYILNKEPEEIKLANILSAVDEEVKTVQCKKESKKGCNSKTTKCITHNLWDELEVHI 120 Query: 116 NAFFDVLTQYSIECLVRNRS 135 N FF+ Q +++ L+ N S Sbjct: 121 NHFFE---QKNLKDLISNSS 137 >gi|84516301|ref|ZP_01003661.1| iron-sulfur cluster assembly transcription factor IscR, putative [Loktanella vestfoldensis SKA53] gi|84509997|gb|EAQ06454.1| iron-sulfur cluster assembly transcription factor IscR, putative [Loktanella vestfoldensis SKA53] Length = 153 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D +++I++ IS +L ++ L ++G+V++VRG Sbjct: 1 MKLSTKGRYAMVALADLALQPADALVNLTEISKRQDISLPYLEQLFVKLRRSGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL RPA +I + +++ A +E+ Sbjct: 61 PGGGYRLSRPASEIRVAEILGAVDET 86 >gi|255034872|ref|YP_003085493.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] gi|254947628|gb|ACT92328.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 44/91 (48%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L A D +A + I+ + + K L L + G+V + G+ GG RL +PA Sbjct: 10 VHILTLLAFSEDEWTSSEYLAGSININPVLVRKELGNLRERGLVASKEGKSGGSRLAKPA 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPL 101 QI + +V +A + + + S DCP+ Sbjct: 70 GQIFMSEVYEAVRQKDLLGKGINSPNPDCPV 100 >gi|210614867|ref|ZP_03290366.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787] gi|210150509|gb|EEA81518.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK DY IR++ A+ + +S I A + +KI + L K G++++ RG Sbjct: 4 MLFTKECDYAIRIMR--ALSDGELVSVSNICAAEQLPSAMTYKITRKLEKQGLLKSCRGT 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L R +I++ D+ A + + EC Sbjct: 62 NGGYCLNRTLSEISLYDICAAVDPDILLLECM 93 >gi|304440321|ref|ZP_07400210.1| iron-sulfur cluster assembly transcription regulator IscR [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371073|gb|EFM24690.1| iron-sulfur cluster assembly transcription regulator IscR [Peptoniphilus duerdenii ATCC BAA-1640] Length = 131 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG+ + MY + + D P IS IA +SE +L ++ L A ++++ R Sbjct: 1 MKLSTKGRYGL-MAMYRLMESYGDGPQSISNIAMKENLSESYLEQLFSLLRNAKLIKSTR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + +I I ++++A E + ++ C + CP C +L Sbjct: 60 GVNGGYSLAKDPKEIKIGEIIEALEGNMELSCC--QKDVVCPKSEECPTRDILDVVQFKI 117 Query: 119 FDVLTQYSIE 128 +VL ++E Sbjct: 118 ENVLDSMTLE 127 >gi|94495944|ref|ZP_01302523.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] gi|94424636|gb|EAT09658.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] Length = 141 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPAKFLTVILSELSREGLVATQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L ++ D+V+ T S + C Sbjct: 62 GGYWLALAPVDVSYGDIVRLTRGSLALTPC 91 >gi|89095323|ref|ZP_01168241.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanospirillum sp. MED92] gi|89080398|gb|EAR59652.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanospirillum sp. MED92] Length = 164 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHEGKGPISLADISERQGISLSYLEQLFAKLRRNELVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R +I + +V+ A ES C + + DC +C Sbjct: 61 PGGGYQLNREQPEINVAEVIDAVNESVDATGC--NRQGDCQGGETC 104 >gi|209966309|ref|YP_002299224.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209959775|gb|ACJ00412.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 151 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+K+ + I ++ A + P + ++I I + +L ++LQ LV+AG++ VRG Sbjct: 2 LRLSKKLVFAIETVLDIAYNAGSAPVQSAEITARQGIPKRYLEQVLQALVRAGVLAGVRG 61 Query: 60 RRGGVRLCRPADQITILDVVK 80 RGG RL + +IT+ ++V+ Sbjct: 62 PRGGYRLAKERRRITVGEIVR 82 >gi|220904349|ref|YP_002479661.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868648|gb|ACL48983.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 147 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 7/97 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M + RT YG+R L+ A P ++ Q+A IS +L +I++ L GI+ Sbjct: 1 MRFSTRTRYGLRFLLRLAAQ---PQGSLLQLGQVAREENISSGYLEQIVRALRPMGILRA 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 VRG GG L +P +I + +V + E C + Sbjct: 58 VRGSGGGYALAKPPAEINMEEVFQHLEGEISPVRCLS 94 >gi|114778698|ref|ZP_01453510.1| Iron-sulphur cluster assembly transcription factor IscR [Mariprofundus ferrooxydans PV-1] gi|114551060|gb|EAU53622.1| Iron-sulphur cluster assembly transcription factor IscR [Mariprofundus ferrooxydans PV-1] Length = 166 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ ND P ++ I+E IS +L ++ + L + G+V +VRG Sbjct: 1 MRLTSKGRYAVSAMVDLNKQQNDGPVTLAAISERQFISLSYLEQLFRRLRENGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I+I D+++A E C Sbjct: 61 PGGGYLLAKDAVDISIADIIRAVNEPVRTTMC 92 >gi|134296308|ref|YP_001120043.1| BadM/Rrf2 family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139465|gb|ABO55208.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia vietnamiensis G4] Length = 179 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C +T L LN Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGACDGSKQPDGHC-MTHELWSTLNQ 119 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 120 KMVEYLDSVSLQDLV 134 >gi|330994153|ref|ZP_08318081.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter sp. SXCC-1] gi|329758620|gb|EGG75136.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter sp. SXCC-1] Length = 148 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 6 RTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 RT I +++ A H IS IAE ++ + +LQ L ++G++E+VRG RGG Sbjct: 7 RTMIAILIMLDVAFHAGRNGTISAADIAERAGLARRGIEPLLQTLSRSGLLESVRGPRGG 66 Query: 64 VRLCRPADQITILDVV 79 RL RP I + D++ Sbjct: 67 YRLGRPRRDILLADIL 82 >gi|220922635|ref|YP_002497937.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947242|gb|ACL57634.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium nodulans ORS 2060] Length = 150 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ L++ A + ++++A A I + FL IL L AGIV + +G Sbjct: 2 LTNKGKYGLKALVHLAGLPPGARIGVAEVAAANNIPKKFLDAILGELRNAGIVHSRKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RP ++I + ++ + C + DC +C + V+ + N+ Sbjct: 62 GGYALARPPEEIRVGHAIRVLDGPLAPIPCASRTGYRPCEDCADEAACAVRLVMLEVRNS 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL ++ +R+R + Sbjct: 122 IAGVLDTLTL-AQMRDRPA 139 >gi|194015517|ref|ZP_03054133.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012921|gb|EDW22487.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 142 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ IA + + + + +I+ L KAG++ T G+ Sbjct: 1 MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE-----ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113 GG +L R D IT+LDV KA E E F + E S DCP+ + L +L + Sbjct: 61 -GGSQLNRSEDDITLLDVYKAVEVVDEGELFQIHE---SPNPDCPIGANIQAVLELILCR 116 Query: 114 ALNAFFDVLTQYSIECLVR 132 A +A VL + + L + Sbjct: 117 AQSAMEQVLAEIKLSELTQ 135 >gi|82659477|gb|ABB88853.1| putative transcriptional regulator [Azospirillum brasilense] Length = 151 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++K+ + I ++ A + P + +I I + +L ++LQ LV+ G++ VRG Sbjct: 2 LRISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVRDGVLAGVRG 61 Query: 60 RRGGVRLCRPADQITILDVVK-------ATEESFFVAECFASHKIDCPL 101 RGG RL R +IT+ ++VK AT+ A HK+ PL Sbjct: 62 PRGGYRLARERRRITLGEIVKVVRSMETATDPIEEPAGSILGHKVVRPL 110 >gi|240169536|ref|ZP_04748195.1| hypothetical protein MkanA1_09496 [Mycobacterium kansasii ATCC 12478] Length = 161 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M ++ + +Y +R ++ A P + +A+A I FL IL L +V + Sbjct: 1 MRMSAKAEYAVRAMVQLAT---APTGNLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKAL 115 RGR GG L RP +I+I DV++ + D P G + LT V R Sbjct: 58 HRGREGGYELARPGSEISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALR 115 Query: 116 NAFFDVLTQYSI 127 + VL + ++ Sbjct: 116 ASMRSVLEETTL 127 >gi|302383292|ref|YP_003819115.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Brevundimonas subvibrioides ATCC 15264] gi|302193920|gb|ADL01492.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas subvibrioides ATCC 15264] Length = 159 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +++IA IS +L ++ L K+G+V +VRG GG RL + A + + ++V A +E Sbjct: 33 LAEIATRQEISLSYLEQLFARLRKSGLVRSVRGPGGGYRLAKTAGETVVSEIVLAVDEPI 92 Query: 87 FVAECFA-SHKIDCPLVGSCGLTSVLRKAL-NAFFDVLTQYSIECLVRNRSSIKK 139 C A S C + G +T L + L + L S+E ++ NR+ ++ Sbjct: 93 RATRCAAHSSPRGCMMAGERCITHNLWEDLGDEIHRYLASVSLEDVIMNRTGPRR 147 >gi|239815132|ref|YP_002944042.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus S110] gi|319794405|ref|YP_004156045.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus EPS] gi|239801709|gb|ACS18776.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus S110] gi|315596868|gb|ADU37934.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus EPS] Length = 178 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 18/157 (11%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L R A IT+ D++ + +E +C K +C +G G +T L +LN Sbjct: 61 PGGGYSLGRKAADITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116 Query: 118 ----FFDVLT-------QYSIECLVRNRSSIKKIFNA 143 F D +T Q + + N+ +K+ +A Sbjct: 117 RMVEFLDSVTLQKLVDDQIAKGVQIENKPVVKRAISA 153 >gi|330446685|ref|ZP_08310337.1| iscR transcriptional regulator IscR transcriptional dual regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490876|dbj|GAA04834.1| iscR transcriptional regulator IscR transcriptional dual regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 145 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ++ I+E IS +L ++ L KAG+V +VRG GG RL A I + V+ A +ES Sbjct: 1 MADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASDIAVGMVIAAVDESV 60 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALN 116 +C K DC C LT L L+ Sbjct: 61 DATKCHG--KGDCQGGARC-LTHTLWHDLS 87 >gi|149908844|ref|ZP_01897504.1| Rrf2 family protein [Moritella sp. PE36] gi|149808118|gb|EDM68059.1| Rrf2 family protein [Moritella sp. PE36] Length = 157 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P +++I+E IS +L ++ L + +V + RG Sbjct: 1 MRLTSKGRYAVTAMIDLALHADMKPVPLAEISERQSISLSYLEQLFSRLRRKNLVASARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L I++ ++ A +E+ +C +S C C S+ Sbjct: 61 PGGGYKLGMLPGDISVGMIIDAVDENVKATKCDSSGG--CNDGKRCLTHSLWDDLSKRIS 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 D L S+ L+ N + IK+I N Sbjct: 119 DFLDNISLADLMTN-NEIKQIVN 140 >gi|302551156|ref|ZP_07303498.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces viridochromogenes DSM 40736] gi|302468774|gb|EFL31867.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces viridochromogenes DSM 40736] Length = 152 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R V+ A + P + +A A I FL IL L + G+V++ RG Sbjct: 1 MRISARADYAVRAVVELAARQGEGPVKAEAVATAQDIPHKFLEGILGDLRRGGVVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL R A +IT+ DV++A + Sbjct: 61 GGGGYRLAREATEITVADVIRAVD 84 >gi|227874364|ref|ZP_03992548.1| possible transcription regulator [Oribacterium sinus F0268] gi|227839772|gb|EEJ50218.1| possible transcription regulator [Oribacterium sinus F0268] Length = 140 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +++++ A HN + +IA ISE +L I++ LVK ++ +RG Sbjct: 1 MLISTKGQYALQLMVDLAEHNGQGYIPLKEIAARQDISEKYLESIVKVLVKKELLLALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 + GG +L RP + ++L+++ A E S Sbjct: 61 KGGGYKLKRPVAEYSLLEILTALEGSL 87 >gi|160894918|ref|ZP_02075692.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50] gi|156863349|gb|EDO56780.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50] Length = 128 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 10/117 (8%) Query: 14 LMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++Y A+++D ISQ E +S+ +L I + L KA ++E G GG RL R Sbjct: 1 MVYLAVNHDGSFIPLKEISQHEE---LSQKYLESITRMLSKAHLIEAASGHGGGYRLTRE 57 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNAFFDVLT 123 ++ ++ +++K TE + C + C C + L +N +FD +T Sbjct: 58 PEEYSVGEILKLTEGTLAPVSCLKDDSVPCDRSELCYTLPIWQGLADLINNYFDNMT 114 >gi|254774316|ref|ZP_05215832.1| hypothetical protein MaviaA2_06565 [Mycobacterium avium subsp. avium ATCC 25291] Length = 161 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 R GG L RP I+I DV++ Sbjct: 61 REGGYELARPGKDISIADVLR 81 >gi|159898645|ref|YP_001544892.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891684|gb|ABX04764.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon aurantiacus ATCC 23779] Length = 148 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 10/108 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + + + + +IL L +AG+V T G GG RL R AD+IT+ D+ ATE + Sbjct: 30 IAASVNTNPVVIRRILGMLNRAGLVYTEYGADGGTRLARSADEITLNDIYHATENCRILP 89 Query: 90 ECFASHKIDCPLVGSCG------LTSVLRKALNAFFDVLTQYSIECLV 131 +S DC CG L+++ A A VL S+ +V Sbjct: 90 LHASSPNQDC----RCGRTIQPVLSTIFSHAEAAMQQVLANKSLAEVV 133 >gi|184154498|ref|YP_001842838.1| hypothetical protein LAF_0022 [Lactobacillus fermentum IFO 3956] gi|260662559|ref|ZP_05863454.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|183225842|dbj|BAG26358.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] gi|260553250|gb|EEX26193.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 141 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R G+ VL Y +H D +++A + + + +++ L KAG++ T G Sbjct: 1 MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 L + ++IT+LDV +A E+ + + DCP+ Sbjct: 60 TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPI 100 >gi|17548747|ref|NP_522087.1| hypothetical protein RS00405 [Ralstonia solanacearum GMI1000] gi|17430996|emb|CAD17677.1| probable cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum GMI1000] Length = 143 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLASAGE-PVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GG L RPAD+IT+LDV +A E +A Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIA 88 >gi|149924361|ref|ZP_01912728.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149814749|gb|EDM74321.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 120 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 IAE I +L +I+ L KAG V RG RGG RL +PA +I + DV+ Sbjct: 12 IAEQQGIPSRYLEEIIGELRKAGFVVGKRGPRGGYRLAKPASEIAVADVI 61 >gi|256826980|ref|YP_003150939.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] gi|256583123|gb|ACU94257.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] Length = 152 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+ + A H P + + A+ IS ++ ++ + G++ + RG Sbjct: 1 MKISTKGRYALRLAIDVAQHQLAGPVPLRESAKRQGISVKYMEQLAAQMTHGGLLTSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL R IT D+++ +E + C CP G+C L +A+ Sbjct: 61 AHGGYRLARLDTDITAGDILRVSEGGYAPVACLEDDFGICPHRGACETIAFWEGLDQAIE 120 Query: 117 AFFDVLT 123 + D +T Sbjct: 121 RYVDSVT 127 >gi|148558060|ref|YP_001257984.1| RrF2 family protein [Brucella ovis ATCC 25840] gi|148369345|gb|ABQ62217.1| RrF2 family protein [Brucella ovis ATCC 25840] Length = 143 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A D + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVLASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L PA +I I ++++A + + C Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91 >gi|322374098|ref|ZP_08048632.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. C150] gi|321277064|gb|EFX54135.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. C150] Length = 159 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 35/54 (64%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 ++E +S+ +L KI++ L G+V++VRG+ GG+ L +P +I+ DV A E Sbjct: 31 LSERLGVSDSYLKKIIKLLDNEGLVKSVRGKNGGIALSKPLSKISFYDVFVAIE 84 >gi|269215941|ref|ZP_06159795.1| Rrf2 family protein [Slackia exigua ATCC 700122] gi|269130200|gb|EEZ61278.1| Rrf2 family protein [Slackia exigua ATCC 700122] Length = 138 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +RTDY R++ ++ ++++AE I F I LV AG++ RG Sbjct: 1 MDLNRRTDYACRMIRAAYKNDGKVISVTKVAEQEGIPYAFARSIQNDLVHAGLLRAERGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LNA 117 RGG+ L T+L V++ + + C + C C +V + A L A Sbjct: 61 RGGLALACDPSTTTLLHVLECVQGPISMTACTNDERF-CDRRDGCEFHAVWKHAESMLKA 119 Query: 118 FFDVLT 123 ++ +T Sbjct: 120 YYASIT 125 >gi|260587960|ref|ZP_05853873.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583] gi|331082470|ref|ZP_08331596.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541487|gb|EEX22056.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583] gi|330400956|gb|EGG80557.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DYG+R++ A+ N + QI E ++ F++KIL+ L K IV++ RG Sbjct: 1 MLITRECDYGVRIIR--ALANGDKMCVHQICEQEDLTPAFVYKILKKLEKKEIVKSFRGS 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L ++T+LD+ A + F++ EC K Sbjct: 59 NGGYALKSSVKELTLLDIYLAVDPEFYMIECMNPQK 94 >gi|222055544|ref|YP_002537906.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221564833|gb|ACM20805.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 153 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ L+Y + P I+ +AE I + FL IL L GI+ + +G+ Sbjct: 2 ISKKTKYALKALIYLSRTKKGEPVLIADLAEDEKIPKKFLELILLTLKNNGILHSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFF----VAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I++ V++ E V+E S +C +CG+ V++ +A Sbjct: 62 GGYSLGKLPREISMGSVIRMLEGPLAPVPCVSETAYSKCTECEDETTCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIE 128 +L +++ Sbjct: 122 ITQILDHTTLQ 132 >gi|77165193|ref|YP_343718.1| hypothetical protein Noc_1716 [Nitrosococcus oceani ATCC 19707] gi|254434008|ref|ZP_05047516.1| rrf2 family protein (putative transcriptional regulator) [Nitrosococcus oceani AFC27] gi|76883507|gb|ABA58188.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207090341|gb|EDZ67612.1| rrf2 family protein (putative transcriptional regulator) [Nitrosococcus oceani AFC27] Length = 141 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R Y I +M A+ + + IA+ IS +L +I L G+VE +RG Sbjct: 1 MRFSNRPRYAISAMMNLALVKQQKSITLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L R A++ITI +++ A ++ Sbjct: 61 PGGGYHLTRAAEKITIAEIIAAVDK 85 >gi|34496550|ref|NP_900765.1| hypothetical protein CV_1095 [Chromobacterium violaceum ATCC 12472] gi|34102404|gb|AAQ58770.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 164 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L +A +V++VRG Sbjct: 1 MRLTTKGRFAVTAMLDLAMREEGGPVTLAGISERQSISLSYLEQLFGKLRRAELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L + I++ D++ A +E +C +C C +T L LN Sbjct: 61 PGGGYTLAKQICDISVADIIVAVDEPVDATQCGGRE--NCRGSQRC-MTHDLWTNLNVTI 117 Query: 119 FDVLTQYSIECLVRNR 134 FD L++ S+ LV + Sbjct: 118 FDYLSKVSLASLVEEQ 133 >gi|146279770|ref|YP_001169928.1| hypothetical protein Rsph17025_3759 [Rhodobacter sphaeroides ATCC 17025] gi|145558011|gb|ABP72623.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 158 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 7/148 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A R I IA + FL IL + AG + ++RG Sbjct: 2 ITQKMKYALKALMVLAEERAGERRALRIEDIAARSGTPKRFLEHILLDIRNAGFIASLRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + QI + D+++ + C + DC +C + V + Sbjct: 62 RSGGYLLIKEPSQIPLSDLLRMIDGPIAPLPCLSRRSYQRCEDCTDEAACRIRKVFAEIF 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 ++ ++ ++ LVR ++ ++I A Sbjct: 122 WSYLLLIESLTLADLVRTPAAAEQIMAA 149 >gi|298290810|ref|YP_003692749.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296927321|gb|ADH88130.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 149 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ ++Y A I +IA A I + FL IL L AG++ + +G Sbjct: 2 LTNKGKYGLKAMLYLARIEPGSSAMGQEIATANNIPKKFLDAILLELRNAGMLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + +I I +++ + C + DC + +C + + K +A Sbjct: 62 GGYALAKTPREIRIGHIIRTLDGPLAPISCASKSAYVPCQDCEDLATCSVRITMSKVRDA 121 Query: 118 FFDVLTQYSIECLV 131 ++L S++ ++ Sbjct: 122 MSEILDGMSLQDMI 135 >gi|227514141|ref|ZP_03944190.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227087512|gb|EEI22824.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 143 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R G+ VL Y +H D +++A + + + +++ L KAG++ T G Sbjct: 3 MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 L + ++IT+LDV +A E+ + + DCP+ Sbjct: 62 TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPI 102 >gi|313888209|ref|ZP_07821883.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845899|gb|EFR33286.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus harei ACS-146-V-Sch2b] Length = 131 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG+ + MY N P + IA+ +SE +L ++ L KA +V+++R Sbjct: 1 MKLSTKGRYGL-MAMYNLKENMGKGPIALKDIAKDENLSESYLEQLFTLLRKADLVKSIR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G GG L R I I +++ A E ++ C + C C +L K Sbjct: 60 GAGGGYVLARDPQNIAIGEIINALEGDISLSCCDLGKNVACGKQADCATRDILSK 114 >gi|213965359|ref|ZP_03393555.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium amycolatum SK46] gi|213951975|gb|EEB63361.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium amycolatum SK46] Length = 157 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT +D +RV+ A+ P R +++AE+ S + K++ LV+ G ++ V Sbjct: 1 MQLTLFSDLSLRVITLMAMGE--PGRKYTAAEVAESLNASRAHVSKVVSRLVELGFLDAV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 +GR GG+ L A ++ +++ T E+ V +C + DCPL+ +C Sbjct: 59 KGRNGGIYLRDSATDKSVGKLLR-TLENNEVVDCVGT---DCPLLPTC 102 >gi|73667036|ref|YP_303052.1| BadM/Rrf2 family transcriptional regulator [Ehrlichia canis str. Jake] gi|72394177|gb|AAZ68454.1| transcriptional regulator, BadM/Rrf2 family [Ehrlichia canis str. Jake] Length = 533 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 1 MHLTKRTDYGIRVLM------YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y + ++ Y ++ P ++S IA++ +SE +L +I+ L K G+V Sbjct: 1 MLITTRLRYAVMFMVSLAQEYYILKGSNQPKKMSHIADSQSLSEGYLEQIIAKLKKQGLV 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRK 113 + +G GG L + + IT+ ++++ E+ + C ++ I C P C ++ Sbjct: 61 NSTKGPGGGYFLNKSPNIITLNLILESIGENIKITRCKNNNVIRCLPNNAKCITHNLWDN 120 Query: 114 ALNAFFDVLTQYSIECLVRN--RSSIK 138 N L S+E ++ N + SIK Sbjct: 121 IGNYIKKYLNSISLEDIINNNFKHSIK 147 >gi|294782082|ref|ZP_06747408.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] gi|294480723|gb|EFG28498.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] Length = 141 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L +Y R+L Y ++ + +RI ++IAE I LF ++L+ + K G+++ Sbjct: 1 MKLKNEIEYVFRILNYLSLQD--KDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIF 58 Query: 58 RGRRGGVRLCRPADQITILDVV 79 +G GG +L + IT+ D V Sbjct: 59 KGANGGYKLNKDPKDITLRDAV 80 >gi|209522489|ref|ZP_03271083.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] gi|209497074|gb|EDZ97335.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] Length = 149 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLAMLSDAGLTTSQMGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L R +QIT+LDV +A E+ A+ F H+ Sbjct: 61 GGGALLARRPEQITLLDVYRAVED----AQLFGVHR 92 >gi|197118861|ref|YP_002139288.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088221|gb|ACH39492.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 153 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A + + FL IL L GI+++ +G+ Sbjct: 2 ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117 GG L R +IT ++ E C + +C +CG+ V++ +A Sbjct: 62 GGYFLGRHPGKITFGQAIRVMEGPLAPVPCVSETAYAKCTECENELTCGIRLVMKDVRDA 121 Query: 118 FFDVL 122 +L Sbjct: 122 MAVIL 126 >gi|300692019|ref|YP_003753014.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum PSI07] gi|299079079|emb|CBJ51741.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum PSI07] Length = 191 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 18/139 (12%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVLRK 113 GG L R AD +T+ D++ A +E +C G+CG +T L Sbjct: 61 GGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCGGEEHSGRCMTHDLWA 112 Query: 114 ALNA-FFDVLTQYSIECLV 131 LN + L S++ LV Sbjct: 113 TLNQKMVEYLDSVSLQNLV 131 >gi|260433735|ref|ZP_05787706.1| iron-sulfur cluster assembly transcription factor IscR [Silicibacter lacuscaerulensis ITI-1157] gi|260417563|gb|EEX10822.1| iron-sulfur cluster assembly transcription factor IscR [Silicibacter lacuscaerulensis ITI-1157] Length = 152 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + +I+E IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPADALVTLGEISERQDISLPYLEQLFVKLRRADLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL RPA +I +++V+ A +E+ Sbjct: 61 PGGGYRLARPASEIRVVEVLAAVDET 86 >gi|210632890|ref|ZP_03297589.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279] gi|210159358|gb|EEA90329.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279] Length = 150 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 16/106 (15%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + ++AE IS +L ++++PL+ AG++ +VRG+ GG L PA I D+++A E Sbjct: 36 LREVAEREQISLKYLEQLVRPLMNAGLLRSVRGKGGGYVLAVPAQDIRAGDILRAAEGER 95 Query: 87 FVAECFASHKIDCPLVGSCGLTSV---------LRKALNAFFDVLT 123 C L G+CG + + L + + A+ D +T Sbjct: 96 STVACEG-------LEGTCGRSDLCSTVKFWTGLEETIEAYVDGVT 134 >gi|167768072|ref|ZP_02440125.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1] gi|317499363|ref|ZP_07957631.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] gi|167710401|gb|EDS20980.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1] gi|291561069|emb|CBL39869.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SSC/2] gi|316893332|gb|EFV15546.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] Length = 145 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R++ A+H+ D+ + I+ IS +L +I++ L G ++++R Sbjct: 1 MKISTKGRYAVRLMYDLAMHHTGDWIA-LKDISRRQEISVKYLEQIVRQLSIRGYLKSLR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L R TI +++K TE S C C C + Sbjct: 60 GPKGGYQLSRDPKDYTIYEILKITEGSLQPVACLDDKVNQCERYHECPTIEIWEGLGQVI 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + L+ ++E +V N++ IK Sbjct: 120 EEYLSGITLEDVV-NKARIK 138 >gi|157370170|ref|YP_001478159.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans 568] gi|157321934|gb|ABV41031.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 161 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 F+ K++ PL K GI+ + GR G + L RPA+QIT+ D+ + E + C Sbjct: 41 FIRKLMVPLTKNGIIVSTLGRNGSIHLGRPAEQITLRDIYLSVIEDKRIWAARPEGPARC 100 Query: 100 PLVGSCG---LTSVLRKALNAFFDVLTQYSI 127 LV + SV+ +A A +VL Y++ Sbjct: 101 -LVSANACWYFKSVVNEAEEASLNVLAGYTV 130 >gi|189347463|ref|YP_001943992.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM 245] gi|189341610|gb|ACD91013.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola DSM 245] Length = 168 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 45/95 (47%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LTK TDY IR L+ N IA I FL ++LQ +++ G+V + G G Sbjct: 4 LTKNTDYAIRALLSLGSANGGYLSARSIAGEQDIPYQFLRRLLQEMIRHGLVVSKEGAGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 G L R I + ++++ + V+EC +I Sbjct: 64 GFMLARNPHDIRVRELIEIFQGRVQVSECLFRKQI 98 >gi|72160826|ref|YP_288483.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX] gi|71914558|gb|AAZ54460.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX] Length = 155 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD +R++M A+ + +A + K + L + G+VE RGR Sbjct: 1 MRLTTFTDLSLRIVMRLAVAGEETLTTRSVAGMLAVPYTHAAKAVARLSEMGLVEARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL T+ +V+ E S V C CPL +C L LR+A AFF Sbjct: 61 GGGLRLTPAGRAATVGSIVRELEGSKDVVAC--EDDPPCPLRAACRLRGELRRAQEAFFA 118 Query: 121 VLTQYSIECLV 131 L + ++E LV Sbjct: 119 ALDEVTVESLV 129 >gi|332878892|ref|ZP_08446607.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683243|gb|EGJ56125.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 148 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 3/127 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y A ++ RI ++A+A I FL KILQ LV+ ++ + +G Sbjct: 2 LSNSSKYAINAVIYLAANSSESKRIGVKEVADALHIPLPFLAKILQALVRKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + ++ VV+ E+ +C S + C C L + ++ + F Sbjct: 62 GGGFWLTDDEKEQPLMRVVEQIGEADKFIKCAMSLR-PCSDEKPCPLHTSVQPFRDNFRK 120 Query: 121 VLTQYSI 127 LT+ SI Sbjct: 121 ELTENSI 127 >gi|284036740|ref|YP_003386670.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM 74] gi|283816033|gb|ADB37871.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM 74] Length = 153 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 18/136 (13%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K + Y IR L Y A+ + N+I ++A + + FL KI+Q LV+ I+ + +G Sbjct: 2 ISKTSGYAIRGLAYLALKSTAVNKIGVHELAAELNVPQPFLGKIMQGLVRRDIISSTKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115 GG I+DVV A + CF + + CP L + + Sbjct: 62 NGGFFTNERTLTTPIIDVVDAIDGLGMFRRCFLGLPECNSEKPCP----------LHQHV 111 Query: 116 NAFFDVLTQYSIECLV 131 F D L Q+S+E L Sbjct: 112 IGFRDSL-QHSLETLT 126 >gi|167747110|ref|ZP_02419237.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662] gi|167654070|gb|EDR98199.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662] Length = 150 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 8/125 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + Y +R+L A HN + +++ IS +L +I++ L G ++++RG Sbjct: 6 VKISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112 RGG +L + + TI DV++ TE S C C C GL V+R Sbjct: 66 PRGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVR 125 Query: 113 KALNA 117 L + Sbjct: 126 DYLGS 130 >gi|307324043|ref|ZP_07603252.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306890492|gb|EFN21469.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 152 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 IA A I FL IL L + G+V + RG GG RL RPAD I+I +V++ + Sbjct: 31 IAGAQGIPHKFLEGILGDLRRGGLVASQRGGNGGYRLARPADTISIAEVIRVVD 84 >gi|210611516|ref|ZP_03288936.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787] gi|319936514|ref|ZP_08010929.1| cysteine desulfurase [Coprobacillus sp. 29_1] gi|210151963|gb|EEA82970.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787] gi|319808406|gb|EFW04961.1| cysteine desulfurase [Coprobacillus sp. 29_1] Length = 135 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +RVL+ A + + +IA+ ISE +L +I++ LV G++ + G+ Sbjct: 2 ISTKGRYALRVLIDLAEQDTTTYVPLKEIAKRQGISEKYLQQIVKILVGKGLLTGISGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL ++ + ++++ E S C A C C + +K N D Sbjct: 62 GGYRLTASPEEYNVGEILELMEGSLTPVACLAPDTKTCSRSSHCKTLPMWKKFDNLVHDY 121 Query: 122 LTQYSIECLVRN 133 +I LV Sbjct: 122 FFHITIADLVNG 133 >gi|297566671|ref|YP_003685643.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851120|gb|ADH64135.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus DSM 9946] Length = 174 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ Y + L Y P R +++ A + +L +IL LV G+V + Sbjct: 1 MRLSATDIYAFKALGYLGTQP--PGRYVGSEELSRATGVRRTYLVRILAALVGQGLVASK 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC-GLTSVLRKAL 115 +G GG L RP +I + DV++A + C + C G C + K Sbjct: 59 KGAGGGYALPRPPQEINLRDVIRAVDGPIAPLSCVSLKWPKACGEEGRCHARNQIWIKVR 118 Query: 116 NAFFDVLTQYSIECLVRN 133 +A + L++ S+ L + Sbjct: 119 DAVLEALSRVSVADLAED 136 >gi|49080808|gb|AAT50060.1| PA3815 [synthetic construct] Length = 164 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R I + V+ A ES C + DC +C Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104 >gi|150016622|ref|YP_001308876.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903087|gb|ABR33920.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 142 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ C + I+E ISE +L +I L K GI+ +G Sbjct: 1 MKISTKGRYGLRALIDICIFSVSEMVTVKSISERQGISERYLEQIFSSLRKGGIINAKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + + TI D++ E + + + + + S L +V+ + FF Sbjct: 61 AQGGYFLAKSSREFTIGDILNVLEGDLLLIDI-ENDENEIENFMSENLWNVINNKIINFF 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + +T +E LV + K Sbjct: 120 NSIT---LEDLVNDYKKYNK 136 >gi|168182103|ref|ZP_02616767.1| rrf2 family protein [Clostridium botulinum Bf] gi|237793605|ref|YP_002861157.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] gi|182674586|gb|EDT86547.1| rrf2 family protein [Clostridium botulinum Bf] gi|229263550|gb|ACQ54583.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] Length = 143 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +++ L +AG+V + G Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKAL 115 GG L + DQIT+LDV +A E E F H I+CP+ + + VL A Sbjct: 61 -GGAYLLKDLDQITLLDVYRAV-EVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQ 118 Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139 A VL ++E +V R IKK Sbjct: 119 EAMEQVLENVTMEYIVTGIRKKIKK 143 >gi|56479101|ref|YP_160690.1| iron-sulphur cluster assembly transcription factor IscR [Aromatoleum aromaticum EbN1] gi|56315144|emb|CAI09789.1| Iron-sulphur cluster assembly transcription factor IscR [Aromatoleum aromaticum EbN1] Length = 160 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A + P ++ IAE IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLASRQTEGPVTLAGIAERQKISLSYLEQLFGKLRRHKLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R +IT+ DV+ A +E +C +C C LT L LN Sbjct: 61 PGGGYRLARDMSRITVADVIVAVDEPLDATQCGGRQ--NCHDEQRC-LTHDLWANLNKRM 117 Query: 119 FDVLTQYSIECLV 131 ++ L ++ LV Sbjct: 118 YEYLDSVTLAALV 130 >gi|254242506|ref|ZP_04935828.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126195884|gb|EAZ59947.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 163 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R I + V+ A ES C + DC +C Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104 >gi|152976812|ref|YP_001376329.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025564|gb|ABS23334.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus NVH 391-98] Length = 138 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAKAHDLSEHYLEQLISPLRNARLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT DV++ E V E + + + +A Sbjct: 61 AYGGYVLSDQPANITAGDVIRVLEGPISVVEMLEEEE--------PAQRQLWMRVRDAVQ 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E LVR Sbjct: 113 EVLDSTTLEDLVR 125 >gi|331084569|ref|ZP_08333668.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401000|gb|EGG80597.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium 6_1_63FAA] Length = 141 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR ++Y + ++I+ I +L K+L L KA + + G Sbjct: 1 MQLNVTTDYAIRTVLYLGQCKKLAS-ATEISNEMKIPRGYLEKVLSKLKKAEYISSDLGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGL----TSVLRKAL 115 RGG RL ++IT+ DV++ E + + C + V C + V +K Sbjct: 60 RGGYRLNMTLEEITLGDVIRLMENATKINRCLEEDMFCNRKAVDYCAVRRYYEKVQKKLE 119 Query: 116 NAFFDV 121 N FF + Sbjct: 120 NHFFTI 125 >gi|225573651|ref|ZP_03782406.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM 10507] gi|225038990|gb|EEG49236.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM 10507] Length = 134 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y IRV++ A + ++ IA+ IS +L I+ L K G + + G Sbjct: 1 MKISTKGRYAIRVMLDLAQQDPKAYTSVASIAQRQEISVKYLEMIISILNKGGYLRSQMG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 ++GG +L R A T+ ++++ TE S C + C +C LT + K L+ Sbjct: 61 KKGGYQLARSAQDYTVGEILRLTEGSLAPVSCLECEEEACGRSMTC-LTLPMWKELDRRI 119 Query: 117 -AFFDVLT 123 + D +T Sbjct: 120 GEYLDSVT 127 >gi|300704652|ref|YP_003746255.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum CFBP2957] gi|299072316|emb|CBJ43650.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum CFBP2957] Length = 191 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 GG L R AD +T+ D++ A +E +C G+CG Sbjct: 61 GGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 97 >gi|294668749|ref|ZP_06733842.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309266|gb|EFE50509.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 147 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + +++ I+E IS +L ++ L +A +V+++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQNGAVKLNDISERQNISLSYLEQLFGKLRRAKLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L AD+I+I ++ A E+ C S K +C C L L + +N Sbjct: 61 PGGGYVLAAAADEISIAQIITAAEDRLDATLC--SSKANCHNGAPCLTHDLWENLNRTIN 118 Query: 117 AFFDVLTQYSI 127 + +T ++ Sbjct: 119 QYLSSVTLQTV 129 >gi|30022474|ref|NP_834105.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|30264468|ref|NP_846845.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42783527|ref|NP_980774.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47529926|ref|YP_021275.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47566586|ref|ZP_00237408.1| RRF2 family protein [Bacillus cereus G9241] gi|49187289|ref|YP_030541.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49478626|ref|YP_038448.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141107|ref|YP_085720.1| transcriptional regulator [Bacillus cereus E33L] gi|65321765|ref|ZP_00394724.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] gi|118479556|ref|YP_896707.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|167636502|ref|ZP_02394799.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167638649|ref|ZP_02396925.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170689641|ref|ZP_02880823.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|177653236|ref|ZP_02935488.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190566990|ref|ZP_03019906.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196034450|ref|ZP_03101859.1| rrf2 family protein [Bacillus cereus W] gi|196039239|ref|ZP_03106545.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|196044851|ref|ZP_03112085.1| rrf2 family protein [Bacillus cereus 03BB108] gi|206969679|ref|ZP_03230633.1| rrf2 family protein [Bacillus cereus AH1134] gi|206976049|ref|ZP_03236959.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217961888|ref|YP_002340458.1| rrf2 family protein [Bacillus cereus AH187] gi|218235656|ref|YP_002369208.1| rrf2 family protein [Bacillus cereus B4264] gi|218899567|ref|YP_002447978.1| rrf2 family protein [Bacillus cereus G9842] gi|218905593|ref|YP_002453427.1| rrf2 family protein [Bacillus cereus AH820] gi|222097841|ref|YP_002531898.1| transcriptional regulator [Bacillus cereus Q1] gi|225866380|ref|YP_002751758.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227817177|ref|YP_002817186.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|228902926|ref|ZP_04067067.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222] gi|228910234|ref|ZP_04074052.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200] gi|228917032|ref|ZP_04080592.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923150|ref|ZP_04086441.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929443|ref|ZP_04092464.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935719|ref|ZP_04098532.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941566|ref|ZP_04104115.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948112|ref|ZP_04110396.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954683|ref|ZP_04116706.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960670|ref|ZP_04122315.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967473|ref|ZP_04128502.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228974496|ref|ZP_04135063.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981090|ref|ZP_04141391.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407] gi|228987650|ref|ZP_04147764.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228993136|ref|ZP_04153058.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228999185|ref|ZP_04158767.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17] gi|229006733|ref|ZP_04164367.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4] gi|229032048|ref|ZP_04188031.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271] gi|229048106|ref|ZP_04193679.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676] gi|229071907|ref|ZP_04205118.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185] gi|229081663|ref|ZP_04214158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2] gi|229086961|ref|ZP_04219118.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44] gi|229093469|ref|ZP_04224572.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42] gi|229098870|ref|ZP_04229806.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29] gi|229105032|ref|ZP_04235686.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28] gi|229111871|ref|ZP_04241417.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15] gi|229117895|ref|ZP_04247257.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3] gi|229123939|ref|ZP_04253131.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201] gi|229129679|ref|ZP_04258647.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4] gi|229141135|ref|ZP_04269677.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26] gi|229146969|ref|ZP_04275333.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24] gi|229152602|ref|ZP_04280791.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550] gi|229158014|ref|ZP_04286085.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342] gi|229163347|ref|ZP_04291299.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803] gi|229175072|ref|ZP_04302590.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3] gi|229180674|ref|ZP_04308014.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W] gi|229186638|ref|ZP_04313799.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1] gi|229192610|ref|ZP_04319571.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876] gi|229198525|ref|ZP_04325229.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293] gi|229600467|ref|YP_002868685.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254684154|ref|ZP_05148014.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254724675|ref|ZP_05186458.1| rrf2 family protein [Bacillus anthracis str. A1055] gi|254736501|ref|ZP_05194207.1| rrf2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254741539|ref|ZP_05199226.1| rrf2 family protein [Bacillus anthracis str. Kruger B] gi|254751362|ref|ZP_05203399.1| rrf2 family protein [Bacillus anthracis str. Vollum] gi|254757694|ref|ZP_05209721.1| rrf2 family protein [Bacillus anthracis str. Australia 94] gi|296504891|ref|YP_003666591.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|300119220|ref|ZP_07056917.1| rrf2 family protein [Bacillus cereus SJ1] gi|301055906|ref|YP_003794117.1| putative transcriptional regulator [Bacillus anthracis CI] gi|29898032|gb|AAP11306.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|30259126|gb|AAP28331.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42739456|gb|AAS43382.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47505074|gb|AAT33750.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556616|gb|EAL14948.1| RRF2 family protein [Bacillus cereus G9241] gi|49181216|gb|AAT56592.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49330182|gb|AAT60828.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974576|gb|AAU16126.1| probable transcriptional regulator [Bacillus cereus E33L] gi|118418781|gb|ABK87200.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] gi|167513497|gb|EDR88867.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167528095|gb|EDR90892.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170666411|gb|EDT17192.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172081518|gb|EDT66590.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190561981|gb|EDV15950.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|195992992|gb|EDX56951.1| rrf2 family protein [Bacillus cereus W] gi|196024339|gb|EDX63012.1| rrf2 family protein [Bacillus cereus 03BB108] gi|196029866|gb|EDX68467.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206735367|gb|EDZ52535.1| rrf2 family protein [Bacillus cereus AH1134] gi|206745801|gb|EDZ57198.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217066112|gb|ACJ80362.1| rrf2 family protein [Bacillus cereus AH187] gi|218163613|gb|ACK63605.1| rrf2 family protein [Bacillus cereus B4264] gi|218539499|gb|ACK91897.1| rrf2 family protein [Bacillus cereus AH820] gi|218541342|gb|ACK93736.1| rrf2 family protein [Bacillus cereus G9842] gi|221241899|gb|ACM14609.1| probable transcriptional regulator [Bacillus cereus Q1] gi|225789058|gb|ACO29275.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227007748|gb|ACP17491.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|228585028|gb|EEK43142.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293] gi|228590917|gb|EEK48775.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876] gi|228596897|gb|EEK54556.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1] gi|228602819|gb|EEK60300.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W] gi|228608440|gb|EEK65744.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3] gi|228620128|gb|EEK77002.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803] gi|228625467|gb|EEK82223.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342] gi|228630863|gb|EEK87503.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550] gi|228636568|gb|EEK93034.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24] gi|228642413|gb|EEK98702.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26] gi|228653796|gb|EEL09666.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4] gi|228659241|gb|EEL14889.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201] gi|228665552|gb|EEL21032.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3] gi|228671627|gb|EEL26925.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15] gi|228678409|gb|EEL32632.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28] gi|228684543|gb|EEL38485.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29] gi|228689940|gb|EEL43744.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42] gi|228696337|gb|EEL49165.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44] gi|228701667|gb|EEL54158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2] gi|228711203|gb|EEL63167.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185] gi|228723261|gb|EEL74633.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676] gi|228729293|gb|EEL80287.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271] gi|228754594|gb|EEM04005.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4] gi|228760802|gb|EEM09766.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17] gi|228766595|gb|EEM15236.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228772110|gb|EEM20562.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778631|gb|EEM26897.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407] gi|228785213|gb|EEM33225.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792250|gb|EEM39823.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228799034|gb|EEM46006.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805010|gb|EEM51606.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811470|gb|EEM57807.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228818122|gb|EEM64198.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823957|gb|EEM69776.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830231|gb|EEM75847.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836529|gb|EEM81879.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842639|gb|EEM87727.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849398|gb|EEM94234.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200] gi|228856710|gb|EEN01229.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222] gi|229264875|gb|ACQ46512.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|296325943|gb|ADH08871.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|298723440|gb|EFI64185.1| rrf2 family protein [Bacillus cereus SJ1] gi|300378075|gb|ADK06979.1| probable transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324328301|gb|ADY23561.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942180|gb|AEA18076.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 138 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT DV++ E V E + + + +A Sbjct: 61 AYGGYVLSDQPANITAGDVIRVLEGPISVVEMIEEEE--------PAQRQLWMRVRDAVQ 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E LVR Sbjct: 113 EVLDSTTLEDLVR 125 >gi|159038768|ref|YP_001538021.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917603|gb|ABV99030.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola CNS-205] Length = 169 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 +Q+A + +L K LQ LVKAG++ G GG RL +PA +IT+L +V+A Sbjct: 29 AQLARYYDLPAPYLAKQLQALVKAGVLVATTGPTGGFRLAQPASEITLLRIVEA 82 >gi|15599010|ref|NP_252504.1| IscR [Pseudomonas aeruginosa PAO1] gi|107103335|ref|ZP_01367253.1| hypothetical protein PaerPA_01004404 [Pseudomonas aeruginosa PACS2] gi|116051840|ref|YP_789317.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|152987595|ref|YP_001346682.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas aeruginosa PA7] gi|218889901|ref|YP_002438765.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58] gi|254236719|ref|ZP_04930042.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|296387669|ref|ZP_06877144.1| putative Rrf2 family protein [Pseudomonas aeruginosa PAb1] gi|313109233|ref|ZP_07795201.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016] gi|9949989|gb|AAG07202.1|AE004799_8 IscR [Pseudomonas aeruginosa PAO1] gi|115587061|gb|ABJ13076.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126168650|gb|EAZ54161.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|150962753|gb|ABR84778.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas aeruginosa PA7] gi|218770124|emb|CAW25886.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58] gi|310881703|gb|EFQ40297.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016] Length = 163 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 GG +L R I + V+ A ES C + DC +C Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104 >gi|206560561|ref|YP_002231326.1| putative transcriptional regulator protein [Burkholderia cenocepacia J2315] gi|198036603|emb|CAR52500.1| putative transcriptional regulator protein [Burkholderia cenocepacia J2315] Length = 179 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C +T L LN Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 120 KMVEYLDSVSLQDLV 134 >gi|254251966|ref|ZP_04945284.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158] gi|124894575|gb|EAY68455.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158] Length = 179 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C +T L LN Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 120 KMVEYLDSVSLQDLV 134 >gi|78066902|ref|YP_369671.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|115352215|ref|YP_774054.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172061082|ref|YP_001808734.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|77967647|gb|ABB09027.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] gi|115282203|gb|ABI87720.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria AMMD] gi|171993599|gb|ACB64518.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MC40-6] gi|325523676|gb|EGD01947.1| putative transcriptional regulator protein [Burkholderia sp. TJI49] Length = 179 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C +T L LN Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 120 KMVEYLDSVSLQDLV 134 >gi|134099141|ref|YP_001104802.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338] gi|291009886|ref|ZP_06567859.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338] gi|133911764|emb|CAM01877.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338] Length = 163 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 +IA + + + + ++L + AG+V + RG G L RP +++T+ DV +A E + Sbjct: 31 ERIAGSVNTNPVVIRRLLGRMRDAGLVHSRRGAEAGWVLARPLEEMTLRDVYEAIEPAPL 90 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 A + +DCP +GS G+ V+R A A + + +EC+ Sbjct: 91 FAVHRSEPNLDCP-IGS-GIRPVMRLAY-ARVEQAVRAELECIT 131 >gi|260062075|ref|YP_003195155.1| rrf2 family protein [Robiginitalea biformata HTCC2501] gi|88783637|gb|EAR14808.1| rrf2 family protein (putative transcriptional regulator) [Robiginitalea biformata HTCC2501] Length = 144 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 9/84 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR ++Y A + R+S +IA+A F KILQ L + G+V++V+G Sbjct: 2 FSKACEYGIRAVVYIAHKSLEGQRVSLKEIADAIDSPVAFTAKILQQLSRNGLVDSVKGA 61 Query: 61 RGG-------VRLCRPADQITILD 77 GG +R R AD ++++D Sbjct: 62 SGGFEMSEGRIREVRLADIVSVVD 85 >gi|119385683|ref|YP_916738.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376278|gb|ABL71042.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 152 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ AI D +++I++ IS +L ++ L +AG+V++VRG Sbjct: 1 MKLSTKGRYAMVALVDLAIAKGDELTSLAEISKRQDISLPYLEQLFVRLRRAGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL + + I + DV++A +E+ Sbjct: 61 PGGGYRLAKAPETIRVADVLEAVDET 86 >gi|146311547|ref|YP_001176621.1| BadM/Rrf2 family transcriptional regulator [Enterobacter sp. 638] gi|145318423|gb|ABP60570.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638] Length = 159 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV-VKATEESFFVAECFASHKID 98 F+ K++ PL + GI+ + GR G + L RPAD+IT+ D+ + TE+ A + D Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDIYISVTEDKKLWAS-----RPD 95 Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 P C +++ + D Q S+E L R+ Sbjct: 96 VP--ARCVVSANACWYFKSIADEAEQASLEVLARH 128 >gi|157692447|ref|YP_001486909.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157681205|gb|ABV62349.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 137 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IAE+ + + K++ L +A ++E RG GG L RPA++IT+LDV +A + S Sbjct: 30 IAESVNSNPAIVRKMMAMLKRADLIEIRRGV-GGAYLKRPAEEITLLDVYRAVDVSED-E 87 Query: 90 ECFASHK--IDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131 E F H+ I CP+ + L S L++A A + L Q +I+ L+ Sbjct: 88 ELFNFHQPVIACPIGQAMDTRLRSELKEAQAALENHLKQVTIQQLL 133 >gi|257065317|ref|YP_003144989.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792970|gb|ACV23640.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 136 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ A H D + +AE +S+ +L +I+ L +GI++ RG Sbjct: 1 MLVSTKGRYALRFLLDLAQHKDAGVISLQAVAERQNVSKKYLERIVSLLSPSGILKITRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 +GG +L R + IT+ +++ TE F Sbjct: 61 YQGGYQLARDPELITVAEILMLTEGGF 87 >gi|157827110|ref|YP_001496174.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii OSU 85-389] gi|157802414|gb|ABV79137.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii OSU 85-389] Length = 128 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 10/109 (9%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 D P +++I+ IS +L +I L KA +V+ +RG GG L ++I I +++ A Sbjct: 12 DEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRGPNGGYILIGKLEEIKISNIMDA 71 Query: 82 TEESFFVAECF-------ASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 E+F + C+ AS+ I C S L L K + +F+ ++ Sbjct: 72 VNENFIMTGCYKKSIKNCASNTIKC---NSHKLWKGLGKHIRDYFENIS 117 >gi|116690148|ref|YP_835771.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|161524318|ref|YP_001579330.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|170701998|ref|ZP_02892918.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|170733480|ref|YP_001765427.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|189350926|ref|YP_001946554.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198432|ref|ZP_03571478.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2M] gi|221208891|ref|ZP_03581888.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2] gi|221214778|ref|ZP_03587747.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD1] gi|254247783|ref|ZP_04941104.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184] gi|116648237|gb|ABK08878.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia HI2424] gi|124872559|gb|EAY64275.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184] gi|160341747|gb|ABX14833.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans ATCC 17616] gi|169816722|gb|ACA91305.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia MC0-3] gi|170133088|gb|EDT01496.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|189334948|dbj|BAG44018.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221165317|gb|EED97794.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD1] gi|221171174|gb|EEE03624.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2] gi|221182364|gb|EEE14765.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2M] Length = 179 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C +T L LN Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 120 KMVEYLDSVSLQDLV 134 >gi|294345242|emb|CBL51475.1| putative nitric oxide reductase regulator [Thermus thermophilus] Length = 141 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 +IAE F+ K+LQ L KAG+VE+ GR+GGV P +I++L V++A Sbjct: 31 EIAERLKAPPAFMAKVLQKLAKAGLVESRVGRKGGVWPKLPPGEISLLKVMEA 83 >gi|295109399|emb|CBL23352.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum A2-162] Length = 149 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D + V++ AI+ + + IAE+ + F+ +++ L KAG++ +V G Sbjct: 5 TKLSD-TVHVMVLIAINKEKSLSSASIAESVHTNPGFVRQLMLKLKKAGLMTSVAGH-AR 62 Query: 64 VRLCRPADQITILDVVKATE 83 L +PADQIT+LD+ KA E Sbjct: 63 PSLSKPADQITLLDIYKAVE 82 >gi|291286176|ref|YP_003502992.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290883336|gb|ADD67036.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 154 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 6 RTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +T Y ++ L Y A HN IS IAE I + FL IL L G + + G+ GG Sbjct: 5 KTVYALKALQYLAESHNQGNVMISVIAENEGIPKKFLETILLTLKNEGFLTSRIGKGGGY 64 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKALNAF 118 +L ++I + D++ A E + + C A H+ C CG +L K Sbjct: 65 KLALAPNEINLKDIISALEGNIALIPC-AVHETGEKKCDQCRDYELCGTRLILTKISERL 123 Query: 119 FDVLTQYSIECLV 131 DVL+ ++ ++ Sbjct: 124 ADVLSSNTLADMI 136 >gi|163746291|ref|ZP_02153649.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanibulbus indolifex HEL-45] gi|161380176|gb|EDQ04587.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanibulbus indolifex HEL-45] Length = 153 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + IAE +S +L ++ L +A +V +VRG GG RL RPA I ++DV+ A +E+ Sbjct: 28 LGDIAERQSVSLPYLEQLFVKLRRAELVASVRGPGGGYRLARPATDIRVVDVLAAVDET 86 >gi|223985227|ref|ZP_03635311.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM 12042] gi|223962805|gb|EEF67233.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM 12042] Length = 156 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T I +Y A H + P ++A C + + KI+ L +AGI + G G Sbjct: 1 MTSELTVAIHAAVYLA-HKNAPQSSDELAVNICTHPVRVRKIMAALCRAGIAVSQEGSEG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RLCR IT+ + E+ VA + + P + SC + S + + ++ + L Sbjct: 60 GYRLCRSPQAITLRQIA----EALNVALVESKWQSGDPEM-SCLVASGMAREMDKIYRSL 114 Query: 123 TQYSIECLVR 132 + +E L R Sbjct: 115 NEQCLESLDR 124 >gi|107028693|ref|YP_625788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105897857|gb|ABF80815.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia AU 1054] Length = 179 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C +T L LN Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119 Query: 118 -FFDVLTQYSIECLV 131 + L S++ LV Sbjct: 120 KMVEYLDSVSLQDLV 134 >gi|292670938|ref|ZP_06604364.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] gi|292647559|gb|EFF65531.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] Length = 147 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ ++ A + P I I+E IS+++L ++ L ++ +V +++ Sbjct: 1 MKISAKGRYGLAAMIVLARSYESSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 G +GG +L R +IT +++ + E S S K+D Sbjct: 61 GSQGGYQLSRHPREITAYEILSSIEISLIEKTGTVSEKMD 100 >gi|300693471|ref|YP_003749444.1| transcriptional regulator, rrf2 [Ralstonia solanacearum PSI07] gi|299075508|emb|CBJ34801.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum PSI07] Length = 143 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GG L RPAD+IT+LDV +A E +A Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIA 88 >gi|291279997|ref|YP_003496832.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754699|dbj|BAI81076.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans SSM1] Length = 140 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++T+ DY IR++ Y A D +I +I + + F+ KI+ L K I++T G+ Sbjct: 4 YITREVDYAIRIVAYLA-GKDERIKIDEICKKLYLKRPFVIKIIHKLNKCHILKTYTGKN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG+ L ++++ D+ + + C + C L C +T+ + + Sbjct: 63 GGILLAMDVSELSLYDIFQCLGFKTTINICTEKPE-HCELNPICNITTFFAGIEKSLVNK 121 Query: 122 LTQYSIECLVRNRSSIKKI 140 L I+ + N + K+ Sbjct: 122 LKNAKIKDFIFNDEDLNKM 140 >gi|239990651|ref|ZP_04711315.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 140 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 11 IRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +RVLM A+ + P ++A + K++ L G+++ RGR GG+ L Sbjct: 3 LRVLMRLAVAEGTEAPT-TREVAATMRVPYTHAAKVVARLQHLGLLDARRGRGGGLTLTS 61 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 +I +V+ E V EC CPL +C L LR A +AF+ L ++ Sbjct: 62 AGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFYAALDPITVA 119 Query: 129 CLV 131 LV Sbjct: 120 DLV 122 >gi|237748543|ref|ZP_04579023.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229379905|gb|EEO29996.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 172 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ T Y IR+L + P I+ ++E I + I L + I ++ G Sbjct: 13 MKLSTHTRYAIRILFELHLARG-PISIAALSELTNIGLKTVENIHAVLRQNDITASIIGA 71 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P I++ +++ +E CF DCP C SV + Sbjct: 72 HGGIRLNKPLSAISLGKMIELFDEGVRFVVCFGEKSNDCPRQNVCETRSVWKTISGQIQK 131 Query: 121 VLTQYSIECLV 131 L S+E ++ Sbjct: 132 ELDTVSLEAIL 142 >gi|83718552|ref|YP_442404.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis E264] gi|167581325|ref|ZP_02374199.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis TXDOH] gi|167619407|ref|ZP_02388038.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis Bt4] gi|257138606|ref|ZP_05586868.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis E264] gi|83652377|gb|ABC36440.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis E264] Length = 179 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92 >gi|53719900|ref|YP_108886.1| hypothetical protein BPSL2290 [Burkholderia pseudomallei K96243] gi|53723804|ref|YP_103329.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei ATCC 23344] gi|67643001|ref|ZP_00441751.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei GB8 horse 4] gi|76811684|ref|YP_334120.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710b] gi|121598333|ref|YP_993530.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei SAVP1] gi|124385259|ref|YP_001029043.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10229] gi|126440264|ref|YP_001059626.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 668] gi|126453431|ref|YP_001066909.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106a] gi|134277379|ref|ZP_01764094.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 305] gi|167000648|ref|ZP_02266459.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei PRL-20] gi|167720354|ref|ZP_02403590.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei DM98] gi|167739346|ref|ZP_02412120.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 14] gi|167816561|ref|ZP_02448241.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 91] gi|167824956|ref|ZP_02456427.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 9] gi|167846474|ref|ZP_02471982.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei B7210] gi|167895052|ref|ZP_02482454.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 7894] gi|167903439|ref|ZP_02490644.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei NCTC 13177] gi|167911687|ref|ZP_02498778.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 112] gi|167919687|ref|ZP_02506778.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei BCC215] gi|217420795|ref|ZP_03452300.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 576] gi|237813020|ref|YP_002897471.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei MSHR346] gi|242314619|ref|ZP_04813635.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106b] gi|254184365|ref|ZP_04890955.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1655] gi|254191399|ref|ZP_04897903.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pasteur 52237] gi|254195785|ref|ZP_04902211.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei S13] gi|254200287|ref|ZP_04906653.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei FMH] gi|254209363|ref|ZP_04915709.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei JHU] gi|254258189|ref|ZP_04949243.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710a] gi|254297029|ref|ZP_04964482.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 406e] gi|254357966|ref|ZP_04974239.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei 2002721280] gi|262193304|ref|YP_001081037.2| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10247] gi|52210314|emb|CAH36293.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52427227|gb|AAU47820.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei ATCC 23344] gi|76581137|gb|ABA50612.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710b] gi|121227143|gb|ABM49661.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei SAVP1] gi|124293279|gb|ABN02548.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10229] gi|126219757|gb|ABN83263.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 668] gi|126227073|gb|ABN90613.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106a] gi|134251029|gb|EBA51108.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 305] gi|147749883|gb|EDK56957.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei FMH] gi|147750136|gb|EDK57207.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei JHU] gi|148027093|gb|EDK85114.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei 2002721280] gi|157807904|gb|EDO85074.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 406e] gi|157939071|gb|EDO94741.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pasteur 52237] gi|169652530|gb|EDS85223.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei S13] gi|184214896|gb|EDU11939.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1655] gi|217396207|gb|EEC36224.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 576] gi|237504649|gb|ACQ96967.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei MSHR346] gi|238524238|gb|EEP87672.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei GB8 horse 4] gi|242137858|gb|EES24260.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106b] gi|243063456|gb|EES45642.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei PRL-20] gi|254216878|gb|EET06262.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710a] gi|261835045|gb|ABO04812.2| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10247] Length = 179 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92 >gi|167837169|ref|ZP_02464052.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis MSMB43] Length = 180 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92 >gi|86742249|ref|YP_482649.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3] gi|86569111|gb|ABD12920.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3] Length = 151 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A N + +A A + FL IL L +AG+V++ RG Sbjct: 1 MQISARADYALRALLTLAASNGRLVKGEALAAAQDLPLRFLENILTDLRRAGLVQSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG +L P ++ITI V++AT+ Sbjct: 61 DGGYQLSLPPERITIATVIRATD 83 >gi|307152699|ref|YP_003888083.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982927|gb|ADN14808.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7822] Length = 147 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA + +L K+L + +AG+V++VRG Sbjct: 1 MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG +L QI++ +++A E+ Sbjct: 61 CLGGYQLAYQPSQISLGQILEAVGET 86 >gi|150021434|ref|YP_001306788.1| BadM/Rrf2 family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793955|gb|ABR31403.1| transcriptional regulator, BadM/Rrf2 family [Thermosipho melanesiensis BI429] Length = 148 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHK 96 F KIL LV +GI+ + RG+ GG +L + +ITI D+V A ++ V CF K Sbjct: 41 FAQKILSRLVSSGILSSSRGKFGGYKLTKKPSEITIYDIVSAVDDISTVITCFVEPGKMK 100 Query: 97 IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 ++ + C + + + + F L ++E L +S +KK Sbjct: 101 LEPEI---CTVNEIWQIVMEKFSKSLMSVTLEDL--KKSYLKK 138 >gi|167758029|ref|ZP_02430156.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704] gi|167663926|gb|EDS08056.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704] Length = 140 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + ++ A+H + I IA +S + ++++ L + G+V ++R Sbjct: 1 MKISTKGIYALEIITDLAMHTGDGALESIGSIARRRGLSVKYSERLIKELKEQGLVVSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNA 117 G GG L R A +IT+ +V++A E EC + + DC + +C + + Sbjct: 61 GAHGGYCLGRDAGEITVREVLQAEEGELAPVECL-TKETDCGIDCNTCATREIWSQIWQI 119 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 D + +I ++ +++ Sbjct: 120 ILDTAQEVTIGDIIEKSKNLR 140 >gi|167563359|ref|ZP_02356275.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia oklahomensis EO147] gi|167570529|ref|ZP_02363403.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia oklahomensis C6786] Length = 179 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92 >gi|254293805|ref|YP_003059828.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hirschia baltica ATCC 49814] gi|254042336|gb|ACT59131.1| transcriptional regulator, BadM/Rrf2 family [Hirschia baltica ATCC 49814] Length = 147 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L R Y + L+ A ++ D P +S IAE IS +L ++ L KA IV++VRG Sbjct: 1 MKLGSRGRYAVMALVDLASNDMDGPVSLSDIAERQKISLSYLEQLFAKLRKANIVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L A + + ++ A +E C Sbjct: 61 PGGGYLLLNDASKTMVSQIIVAVDEPIQTTRC 92 >gi|218678083|ref|ZP_03525980.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 166 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 + +A+ +S +L K LQ L AGI++TV G +GG RL + +I++LD++ A E Sbjct: 29 AALAQFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAPAEISLLDILLAVE 84 >gi|110679145|ref|YP_682152.1| rrf2 family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109455261|gb|ABG31466.1| transcriptional regulator, rrf2 family, putative [Roseobacter denitrificans OCh 114] Length = 177 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query: 24 PNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 P R+ + IAE + + + ++L L KAG++ + +G GG RL R QIT+ DV Sbjct: 58 PERVQTSADIAEHAGTNPVVVRRVLGKLRKAGLLTSEKGHAGGWRLARAPGQITLADVYL 117 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 A +ES + + +C + +L++ + + + Q +E L Sbjct: 118 ALDESLVATG-------EAEAIPACSVEHILQRKVASVLKDVEQSLVERL 160 >gi|313900567|ref|ZP_07834060.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2] gi|312954629|gb|EFR36304.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2] Length = 138 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + S++++ +S+ +L KI++ LVKA IV ++ + GG L + +IT LD+ A E Sbjct: 23 PVKSSELSKKLNVSDSYLKKIMRQLVKAKIVSSIASKNGGFVLLKTPSRITFLDLFNAIE 82 Query: 84 --ESFFVAECFASHKIDC 99 E F V+ D Sbjct: 83 GQEQFAVSTSLVDRVFDS 100 >gi|313205515|ref|YP_004044692.1| transcriptional regulator, badm/rrf2 family [Riemerella anatipestifer DSM 15868] gi|312444831|gb|ADQ81186.1| transcriptional regulator, BadM/Rrf2 family [Riemerella anatipestifer DSM 15868] gi|315023387|gb|EFT36397.1| rrf2 family protein (putative transcriptional regulator) [Riemerella anatipestifer RA-YM] gi|325335053|gb|ADZ11327.1| Predicted transcriptional regulator [Riemerella anatipestifer RA-GD] Length = 144 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 4/128 (3%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR + A N+ + +I+ + F+ KILQ L KA I+E+VRG Sbjct: 2 FSKACEYAIRSAICIAQKRLNNQRVNVKEISASIDAPVAFIAKILQQLCKANIIESVRGH 61 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + +I I D++ A + S +C K +C V C + + R+ Sbjct: 62 QGGFSIDIEQLKEIKIYDIIVAIDGSGLFTKCGLGLK-ECSSVNPCPVHNDFREIKAKLE 120 Query: 120 DVLTQYSI 127 ++ YS+ Sbjct: 121 NITKSYSL 128 >gi|299770003|ref|YP_003732029.1| putative transcriptional regulator [Acinetobacter sp. DR1] gi|298700091|gb|ADI90656.1| putative transcriptional regulator [Acinetobacter sp. DR1] Length = 141 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91 + KI L KAG+V G RGG L R A +I+ LD+V A E + EC Sbjct: 1 MAKIFPKLEKAGLVIAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60 Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 F D G C + +V+ +A A D L +++ Sbjct: 61 FNHAPPDWATGGVCAVHAVMLQAEKAMRDALGAHTL 96 >gi|157825855|ref|YP_001493575.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia akari str. Hartford] gi|157799813|gb|ABV75067.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia akari str. Hartford] Length = 128 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +++I+ IS +L +I L KA +V+ +RG +GG L ++I I D++ A Sbjct: 14 PVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYVLIGNLEEIKISDIMDAVN 73 Query: 84 ESFFVAECF 92 E+F + C+ Sbjct: 74 ENFIMTTCY 82 >gi|315925641|ref|ZP_07921851.1| transcriptional regulator superfamily protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621182|gb|EFV01153.1| transcriptional regulator superfamily protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 152 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T++TDY IR+L I + +I +AE + F +KI + L +AGIV RG Sbjct: 1 MLITRKTDYAIRLLR--GIADGGKKKIPVLAENEQVPRPFAYKITKKLQQAGIVAVGRGA 58 Query: 61 RGGVRLCRP 69 GG L RP Sbjct: 59 AGGTSLNRP 67 >gi|313682187|ref|YP_004059925.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313155047|gb|ADR33725.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 137 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + YG+ + A+H + +I IAE I + +L +IL L K G+++++RG Sbjct: 4 ISTKGSYGLAAMYELALHYGQGHLQIRDIAEKANIPQNYLEQILATLRKEGLIQSIRGAG 63 Query: 62 GGVRLCRPADQITILDVVKATE 83 GG L + + I + +++ A E Sbjct: 64 GGYLLAKAPNAIAVFEILVALE 85 >gi|332289844|ref|YP_004420696.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis UMN179] gi|330432740|gb|AEC17799.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis UMN179] Length = 156 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P ++ I+E IS +L ++ L + G+V++ RG Sbjct: 1 MKLTSKGRYAVTAILDIALNAGSGPVTLADISERQKISLSYLEQLFAKLRRHGLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +++I+I ++ A E+ +C + K +C C S+ +K + Sbjct: 61 PGGGYQLGYASEEISIGMIISAVNENVQATKCKS--KGNCQDGVQCLTHSLWQKLSDRIE 118 Query: 120 DVLTQYSIECLVRNR 134 D L + ++ LV ++ Sbjct: 119 DFLNEITVAELVSSQ 133 >gi|300114068|ref|YP_003760643.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540005|gb|ADJ28322.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 140 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R Y I +M A + + IA+ IS +L +I L G+VE +RG Sbjct: 1 MRFSNRPRYAISAMMNLALVKQQETVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L R A++ITI +++ A ++ Sbjct: 61 PGGGYHLTRTAEKITIAEIIAAVDK 85 >gi|220908247|ref|YP_002483558.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864858|gb|ACL45197.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7425] Length = 147 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 15/146 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L R YG+ L+ ++H + P + + IA I+ +L +IL L +AGIV + R Sbjct: 3 MELPIRVHYGLLALLELSLHATSRQPLKANAIAARQEIASRYLEQILSMLRQAGIVASYR 62 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-----SVLRK 113 G GG L R +IT+ DV F E +K P G LT + ++ Sbjct: 63 GAAGGYTLARDPSEITVWDV-------FSCLEGETINKQPAP-DGPPNLTKEILQEIWQQ 114 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKK 139 + A +VL Q +++ L+ R K+ Sbjct: 115 STTAAQNVLQQITLQDLLIRRKEYKQ 140 >gi|116873720|ref|YP_850501.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742598|emb|CAK21722.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 156 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%) Query: 37 SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVA 89 S ++ KIL+ LV +G++ +V G GG L + ++I +LD+V+A E +S + Sbjct: 39 SSSYISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIH 98 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 F+ + + G +TS R A + + L + LV Sbjct: 99 TVFSDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 140 >gi|168703183|ref|ZP_02735460.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata obscuriglobus UQM 2246] Length = 136 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 8/134 (5%) Query: 14 LMYCAIH--NDYPNRISQIAEACCISEL-FLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ A H + P R++ IA IS FL +IL L K G+V + RG GG + R Sbjct: 1 MLELAAHYGDPKPVRLTDIANKHGISSPRFLVQILIQLNKDGLVTSTRGAAGGYHIARAP 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 IT+ DV+ A E + + K PL + L V + A D L + + Sbjct: 61 SAITLADVIAAVEGTEQAGTRTKARKPTSPL--AAALDDVWDRVRTAHEDFLLK---QAA 115 Query: 131 VRNRSSIKKIFNAG 144 + +++ ++ ++G Sbjct: 116 ILKSTTLAQLVDSG 129 >gi|254821269|ref|ZP_05226270.1| hypothetical protein MintA_15127 [Mycobacterium intracellulare ATCC 13950] Length = 161 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIQLATVSDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 R GG L R I+I DV++ + D P G + LT V R + Sbjct: 61 REGGYELARSGSDISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118 Query: 119 FDVLTQYSI 127 VL Q ++ Sbjct: 119 RSVLEQTTL 127 >gi|157964665|ref|YP_001499489.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia massiliae MTU5] gi|157844441|gb|ABV84942.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia massiliae MTU5] Length = 139 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + P +++++ IS +L +I L A +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKNADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92 +GG L ++I I D++ A E+F + C+ Sbjct: 61 SKGGYILIGNLEEIKIADIMDAVNENFIMTTCY 93 >gi|332524348|ref|ZP_08400568.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332107677|gb|EGJ08901.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 166 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ RT + + L+ + P ++ I +S ++ ++ L + G+VE+ RG Sbjct: 1 MRMSTRTRFAVNALVDLGLRQQAGPVALAAICGRLQVSLSYMEQVFARLRRQGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L R AD ITI DVV A E+ Sbjct: 61 PGGGYTLGRRADAITIADVVSAVED 85 >gi|153815370|ref|ZP_01968038.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756] gi|317500841|ref|ZP_07959053.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089263|ref|ZP_08338165.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847229|gb|EDK24147.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756] gi|316897721|gb|EFV19780.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium 8_1_57FAA] gi|330405815|gb|EGG85344.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium 3_1_46FAA] Length = 136 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR ++Y + ++I+ I +L K+L L KA + G Sbjct: 1 MQLNVTTDYAIRTVLYLGQCKKIAS-ATEISNEMGIPRGYLEKVLSKLKKAEYISADLGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 RGG RL + IT+ DV++ E + + C Sbjct: 60 RGGYRLNKTLKDITLGDVIRLMESTTKINRCL 91 >gi|269793340|ref|YP_003318244.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100975|gb|ACZ19962.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 142 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 ++A SE L K++Q L +AGI+ + G GGV L ++ +LDV +A E Sbjct: 32 GELASRIGASEAHLSKVVQHLTRAGILRSKSGPGGGVELAADPSRLKLLDVYEAMEGKSS 91 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 C + CP G C ++ + + D L + ++ Sbjct: 92 KGGCPLGKGL-CPFGGRCLFGGLMGRVEDQVLDFLARTTL 130 >gi|32474577|ref|NP_867571.1| hypothetical protein RB6994 [Rhodopirellula baltica SH 1] gi|32445116|emb|CAD75118.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] gi|327541268|gb|EGF27811.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47] Length = 141 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 9 YGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 Y +M A+H++ P R S+I I +L +IL+ L G V VRG +GG L Sbjct: 9 YACLAMMDLAMHSNDGQPVRTSEITSRHDIPGPYLVQILRTLKSTGWVRAVRGSQGGYVL 68 Query: 67 CRPADQITILDVVKA 81 D IT+LD+ +A Sbjct: 69 AVDPDSITLLDIAEA 83 >gi|254411526|ref|ZP_05025303.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes PCC 7420] gi|196182027|gb|EDX77014.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes PCC 7420] Length = 145 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +T+Y + L+ H + P +I QIA I + +L ++L L + +V + R Sbjct: 1 MELSCKTEYTLLALLELTGHYNQGEPLQIRQIAAQQNIPDRYLEQLLATLRRGNLVRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R +IT+LD++ + S ++ I S + ++ + Sbjct: 61 GAKGGYILAREPWRITLLDIMNCLDGSTATTSGSQTNAI---TEASAIVQETWQEVRDRT 117 Query: 119 FDVLTQYSIECL---VRNRSSIKKIF 141 D+L Y+++ L + NR + ++ Sbjct: 118 NDILRDYTLQDLWEKLNNRQQLNIMY 143 >gi|119898309|ref|YP_933522.1| Rrf2 family protein [Azoarcus sp. BH72] gi|119670722|emb|CAL94635.1| Rrf2 family protein [Azoarcus sp. BH72] Length = 160 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A D P ++ IA+ IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLASRQADGPVTLAGIADRQKISLSYLEQLFGKLRRHKLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG RL R IT+ D++ A +E +C K +C C L + L K + Sbjct: 61 PGGGYRLARDMAAITVADIIIAVDEPLDATQCGG--KQNCHDEHRCVTHDLWANLNKRMY 118 Query: 117 AFFDVLT 123 A+ D ++ Sbjct: 119 AYLDSVS 125 >gi|332665390|ref|YP_004448178.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334204|gb|AEE51305.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter hydrossis DSM 1100] Length = 137 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++ Y I+ L+Y A + + IA I + FL IL + +A +V + +G Sbjct: 2 LSQKAKYAIKALIYLAKQEKGSLTKTADIASKSSIPKKFLELILIDMKRASLVSSKQGIG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + AD+I + D+ + + + + C F DCP +C + L + + Sbjct: 62 GGYYLLKDADEINLADIYRLFDGAIAMLPCASLRFYEPCHDCPDEATCLIRKSLIQVRDQ 121 Query: 118 FFDVLTQYSIECLVRN 133 L + +I+ L + Sbjct: 122 TLHALEKTTIKMLTKE 137 >gi|259502086|ref|ZP_05744988.1| Rrf2 family protein [Lactobacillus antri DSM 16041] gi|259169899|gb|EEW54394.1| Rrf2 family protein [Lactobacillus antri DSM 16041] Length = 143 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L+Y I N S IAE+ + + +++ +VKAGI+E G+ Sbjct: 1 MKYSHRLSDAVHILVYLEILGS--NSSSAIAESVNSNPSLIRRLIAHMVKAGILER-SGQ 57 Query: 61 RG--GVRLCRPADQITILDVVKATE 83 G ++L RPAD+I++LD+ +A E Sbjct: 58 HGEITIKLTRPADRISLLDIYQAVE 82 >gi|220910380|ref|YP_002485691.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866991|gb|ACL47330.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7425] Length = 145 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y + ++ A + P +I QIA I + +L ++L L + G++ + R Sbjct: 1 MELSCKSEYALLAMLELADAYKRNEPLQIRQIAALHSIPDRYLEQLLATLRRCGLIRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G +GG L R QIT+L+V++ E Sbjct: 61 GAKGGYLLAREPWQITLLEVMECIE 85 >gi|294501358|ref|YP_003565058.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium QM B1551] gi|295706705|ref|YP_003599780.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium DSM 319] gi|294351295|gb|ADE71624.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium QM B1551] gi|294804364|gb|ADF41430.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium DSM 319] Length = 138 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+ +SE +L +++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKRFGEGPISLKTIAQTHDLSEHYLEQLISPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L IT D++ E Sbjct: 61 AYGGYILAHEPANITSGDIISVLE 84 >gi|160931599|ref|ZP_02078994.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753] gi|156869470|gb|EDO62842.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753] Length = 168 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE C + + K++ L KAG+V T G GG L + A+QIT+ + A + F + Sbjct: 42 LAENICTNPARVRKVMAKLKKAGLVSTKEGSEGGYSLAKNAEQITLKQISAALQIEFVSS 101 Query: 90 EC-FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 S +DC +V S G+ V+ + L + D L Q +E Sbjct: 102 HWRSGSQNLDC-MVAS-GMADVMDR-LYSDLDALCQKRLE 138 >gi|126736370|ref|ZP_01752112.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] gi|126714191|gb|EBA11060.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] Length = 154 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + + +++I++ IS +L ++ L +AG+V++VRG Sbjct: 1 MKLSTKGRYAMVALADLALQDGNALVNLTEISKRQDISLPYLEQLFVKLRRAGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL RPA I + +++ A +E+ Sbjct: 61 PGGGYRLARPAADIRVSEILGAVDET 86 >gi|254459171|ref|ZP_05072593.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] gi|207084064|gb|EDZ61354.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] Length = 137 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 9 YGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 YG+ ++ A ++ +I IA I + +L +IL L K+G+VE+VRG GG +L Sbjct: 10 YGLTAIIILAKEDNAKLLQIKDIAAKGDIPQNYLEQILVLLKKSGLVESVRGANGGYKLS 69 Query: 68 RPADQITILDVVKATE 83 R + I++ +V+ + E Sbjct: 70 RDKNNISVYEVLNSLE 85 >gi|159045131|ref|YP_001533925.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912891|gb|ABV94324.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 156 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D + IAE + + + ++L L +AG++ + +G Sbjct: 23 MKRNSRLSLALHTLSHMAGEPDRMRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RP IT+ DV A +E + D P +C + L + +++ + Sbjct: 83 AGGWRLARPPQDITLADVYLALDERMVA----TGNAEDVP---ACSIEHALHRRVSSVLE 135 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 + + ++ L +SI ++ A Sbjct: 136 EIEESLVQRL--RETSISEVRGA 156 >gi|46580376|ref|YP_011184.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602251|ref|YP_966651.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46449793|gb|AAS96443.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120562480|gb|ABM28224.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] gi|311233649|gb|ADP86503.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 173 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ Y R+L+ A H P S++A+ IS F+ KI++ L AG+V +VR Sbjct: 1 MRISSTVHYASRLLVNLAQHTPAAGPVSASELADRTGISVKFIEKIIRQLRTAGMVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + +T+ DV++ E C DC C + A A Sbjct: 61 GATGGHLLSMRPEDVTLGDVLRVVEGGVQPPNCCVGD--DCEDT-PCRCKTAWISAAKAL 117 Query: 119 FDVLTQYSI 127 L QY++ Sbjct: 118 EATLDQYTL 126 >gi|326335576|ref|ZP_08201763.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692342|gb|EGD34294.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 143 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 16/141 (11%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AI++ N+ + +IAE I FL KILQ L K + + +G Sbjct: 2 LSNSSKYAINAVLYLAINSSVNNKKGVKEIAETLQIPTAFLAKILQVLAKKEAICSTKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115 GG L + + +V + S A C S +I CP+ + V Sbjct: 62 GGGFYLTEEKAKAPLASIVHYIDGSDKFAVCLLGIRSCSEEIPCPMHYAVKPFKV----- 116 Query: 116 NAFFDVLTQYSIECL---VRN 133 F + L ++SIE VRN Sbjct: 117 -RFLEELEKHSIEYFAAKVRN 136 >gi|260588850|ref|ZP_05854763.1| sensory box protein [Blautia hansenii DSM 20583] gi|260540629|gb|EEX21198.1| sensory box protein [Blautia hansenii DSM 20583] Length = 488 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR++ + A + + P + IA + I ++ KI++ L A IV +V G Sbjct: 1 MQLTSTTDYSIRLVCFLA-YKEEPCSTATIATSANIPNNYIPKIIKKLKIANIVGSVEGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 +GG L + + IT+ D++ E + + +C Sbjct: 60 QGGYFLLKKPETITLWDILDTMESTMKINKCL 91 >gi|68171749|ref|ZP_00545098.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str. Sapulpa] gi|67998829|gb|EAM85532.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str. Sapulpa] Length = 524 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 1 MHLTKRTDYGIRVLM------YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y + ++ Y + P R+S IA + +SE +L +I+ L K G++ Sbjct: 1 MLITTRLRYAVMFMVKLAQEYYTLKGSTQPKRMSHIANSQSLSEGYLEQIIVKLKKQGLI 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 + +G GG L + + IT+ ++++ E+ + C +H I C Sbjct: 61 NSTKGPGGGYSLNKSPNSITLNLILESIGENIKITRC-KNHLIGC 104 >gi|121594035|ref|YP_985931.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|120606115|gb|ABM41855.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] Length = 187 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R + + A+ + P + I+ IS +L I L +AG+V ++RG Sbjct: 1 MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L RP ++++ D+V A+E+ Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEK 85 >gi|183984102|ref|YP_001852393.1| putative transcriptional regulatory protein [Mycobacterium marinum M] gi|183177428|gb|ACC42538.1| conserved hypothetical transcriptional regulatory protein [Mycobacterium marinum M] Length = 161 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATADSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 R GG L RP I+I DV++ Sbjct: 61 RDGGYELARPGTDISIADVLR 81 >gi|260655751|ref|ZP_05861220.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] gi|260629367|gb|EEX47561.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] Length = 152 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+ L+ + P ++E+ S+ L K+LQ L AG V +RG GG +L Sbjct: 4 GLHALVALGREPEQPRTTETLSESIGCSKTHLSKVLQKLCHAGYVTALRGPGGGYQLALR 63 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 ++I +L V + F C H + P C + +++ + AF D L + Sbjct: 64 PEKICMLHVFELLGGPFIPTGCTVDHHQNEP----CLIGAMMDELTIAFRDYLATKTFYH 119 Query: 130 LVR 132 L+R Sbjct: 120 LLR 122 >gi|255029797|ref|ZP_05301748.1| hypothetical protein LmonL_13364 [Listeria monocytogenes LO28] gi|332312785|gb|EGJ25880.1| Rrf2 family protein [Listeria monocytogenes str. Scott A] Length = 143 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92 ++ KIL+ LV +G++ +V G GG L + ++I +LD+V+A E +S + F Sbjct: 29 YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 88 Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + + + G +TS R A + + L + LV Sbjct: 89 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 127 >gi|222111232|ref|YP_002553496.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730676|gb|ACM33496.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus TPSY] Length = 187 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R + + A+ + P + I+ IS +L I L +AG+V ++RG Sbjct: 1 MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L RP ++++ D+V A+E+ Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEK 85 >gi|238028021|ref|YP_002912252.1| putative transcriptional regulator [Burkholderia glumae BGR1] gi|237877215|gb|ACR29548.1| Predicted transcriptional regulator [Burkholderia glumae BGR1] Length = 178 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAGDVTVADIIIAVDEPLDATQC 92 >gi|312884218|ref|ZP_07743927.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367991|gb|EFP95534.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC BAA-2122] Length = 168 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL AD I I ++ A +ES +C + DC C LT L L++ Sbjct: 61 PGGGYRLGGEADTIAIGMIIAAVDESVDATKCQG--RGDCQGGARC-LTHTLWHDLSSRI 117 Query: 119 FDVLTQYSIECLVRN 133 D L ++ L+++ Sbjct: 118 SDFLNNITLGELMKD 132 >gi|116622995|ref|YP_825151.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226157|gb|ABJ84866.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 158 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ +Y IR ++ A + + IAE I FL KILQ L + G++ + +G Sbjct: 1 MIYSRSAEYAIRAFVHLAQVQEGKYAMVKNIAEQEDIPAHFLAKILQQLARKGLLRSSKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L A +I +LD+V+A + Sbjct: 61 PTGGFALRVDASEIRLLDIVEALD 84 >gi|303327401|ref|ZP_07357842.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3] gi|302862341|gb|EFL85274.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3] Length = 148 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+ A D ++ Q+A IS +L +I++ L GI+ VRG Sbjct: 3 MRFSTRTRYGLRFLLRLAAQPKDSLLQLGQVAREENISSGYLEQIVRALKPLGILRAVRG 62 Query: 60 RRGGVRLCRPADQITILDV 78 GG L + +I + DV Sbjct: 63 SGGGYALAKDPSEINMEDV 81 >gi|118619195|ref|YP_907527.1| putative transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571305|gb|ABL06056.1| conserved hypothetical transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 161 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATTDSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 R GG L RP I+I DV++ Sbjct: 61 RDGGYELARPGTDISIADVLR 81 >gi|254488419|ref|ZP_05101624.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp. GAI101] gi|214045288|gb|EEB85926.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp. GAI101] Length = 153 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L A+ P + IAE IS +L ++ L +A +V +V Sbjct: 1 MKLSTKGRYAMVALTDIALQP--PGGLVSLGDIAERQSISLPYLEQLFVKLRRAELVASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEE 84 RG GG RL RPA I ++D++ A +E Sbjct: 59 RGPGGGYRLGRPASDIRVVDILSAVDE 85 >gi|300902070|ref|ZP_07120084.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|301307042|ref|ZP_07213079.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|300405815|gb|EFJ89353.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|300837728|gb|EFK65488.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|315252301|gb|EFU32269.1| Rrf2 family protein [Escherichia coli MS 85-1] Length = 148 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 TK +YGIR ++ A+++ R+S +IA++ E F KILQ L K I+ +V+G Sbjct: 2 FTKACEYGIRACIFVALNSMEKRRVSLKEIAQSIDSPEYFTAKILQKLAKGKIIYSVQGA 61 Query: 61 RGGVRLCRPA-DQITILDVV 79 +GG + I+I D+V Sbjct: 62 QGGFEMEEAKIRTISIEDIV 81 >gi|282897323|ref|ZP_06305325.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] gi|281197975|gb|EFA72869.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] Length = 160 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 I+ IA I E +L +IL L +AGIV++ RG +GG L R +I++L++V E Sbjct: 46 INDIAAKQPIPERYLEQILTQLRRAGIVQSQRGSKGGFLLVREPWEISLLEIVTLIE--- 102 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 E + + + +A A +VL +Y+++ L + R Sbjct: 103 --GERNEKRNAKVLTIEKSLVWEIWERANIASVEVLGRYTLQDLCQERE 149 >gi|83644269|ref|YP_432704.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632312|gb|ABC28279.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 159 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 4/126 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L + DYG+ + ++ Q+A+ + + KI++ LV G+V + RG Sbjct: 2 LRLARLADYGLLIASSLEEPGKALVKLDQVADQTKLPIPTVRKIMKLLVDGGVVHSERGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL---TSVLRKALNA 117 +GG L A I+I +++A E + +C A ++ C ++ +C + SV+ + ++ Sbjct: 62 KGGYCLSDAAYNISIARILRAVEGGVALTDCCAEERV-CDVMHACTVHSNWSVINQTVSE 120 Query: 118 FFDVLT 123 F+ LT Sbjct: 121 IFERLT 126 >gi|199598905|ref|ZP_03212315.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus rhamnosus HN001] gi|199590213|gb|EDY98309.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus rhamnosus HN001] Length = 146 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 19/127 (14%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A H DY + I +I+E I + KI L K+GI+ + G GG+RL + IT+ + Sbjct: 23 AQHEDYLS-IQKISEMLNIPVPSIKKISSTLKKSGILTSKTGLNGGLRLAKTPQTITVYE 81 Query: 78 VVKATEESFFVAECFASH------------KIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125 ++ A E + A F H ++ LV S T+VL +A +A VL Q Sbjct: 82 ILAAIEGT---APLFKLHQEIDPAAFVNGERVTSWLVAS---TNVLNRAEDAMVQVLKQT 135 Query: 126 SIECLVR 132 SI L Sbjct: 136 SIADLAE 142 >gi|324998176|ref|ZP_08119288.1| transcriptional regulator [Pseudonocardia sp. P1] Length = 258 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 L ++ L +AG+V + RG GG RL R AD+IT+ DVV+ATE + V Sbjct: 176 LVNVMLQLRRAGLVTSRRGCEGGYRLARRADEITVADVVRATEGAVAV 223 >gi|300778846|ref|ZP_07088704.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504356|gb|EFK35496.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 135 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 3 LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K++ Y + L Y N+ P IS+IAE I FL IL L KA I+++ +G+ Sbjct: 2 LSKKSQYAFKALSYLVEKRNEGPILISEIAEHKKIPLKFLENILLELKKADILDSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG + + + +++ + C F DC CGL VL + +A Sbjct: 62 GGYFFKENPENVKLAKIIRLVNGPIAMLPCVSLNFYEKCEDCN-EDHCGLHDVLIEVRDA 120 Query: 118 FFDVLTQYSIECLV 131 ++L ++ LV Sbjct: 121 SLNILESKTLMDLV 134 >gi|218438424|ref|YP_002376753.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Cyanothece sp. PCC 7424] gi|218171152|gb|ACK69885.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7424] Length = 147 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ Y P + IA + +L K+L + +AG+V+++RG Sbjct: 1 MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRL-CRPADQITILDVVKATEESF 86 +GG +L C P+ QI++ +++A E+ Sbjct: 61 CQGGYQLACEPS-QISLGQILEAVGETI 87 >gi|307729210|ref|YP_003906434.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526617|ref|YP_004228770.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1001] gi|307583745|gb|ADN57143.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1003] gi|323383619|gb|ADX55710.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1001] Length = 176 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R + +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRPEDVTVADIIIAVDEPLDATQC 92 >gi|159184929|ref|NP_354795.2| hypothetical protein Atu1813 [Agrobacterium tumefaciens str. C58] gi|159185848|ref|NP_356954.2| hypothetical protein Atu3663 [Agrobacterium tumefaciens str. C58] gi|159140208|gb|AAK87580.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] gi|159140982|gb|AAK89739.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 140 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +IA+ + + + + L L ++GIV + GR GG +L R DQIT+LDV +A E + Sbjct: 29 RIAQMLNTNPVVVRRTLGALRESGIVVSEGGRGGGWKLIRSLDQITVLDVQRALVEGQML 88 Query: 89 AECFASHKIDCPL 101 + +CP+ Sbjct: 89 PAPLSKDHPNCPV 101 >gi|163942148|ref|YP_001647032.1| BadM/Rrf2 family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013616|ref|ZP_04170747.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048] gi|229019620|ref|ZP_04176432.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273] gi|229025860|ref|ZP_04182256.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272] gi|229062093|ref|ZP_04199418.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603] gi|229135221|ref|ZP_04264020.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196] gi|229169141|ref|ZP_04296856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621] gi|163864345|gb|ABY45404.1| transcriptional regulator, BadM/Rrf2 family [Bacillus weihenstephanensis KBAB4] gi|228614369|gb|EEK71479.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621] gi|228648263|gb|EEL04299.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196] gi|228717245|gb|EEL68920.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603] gi|228735412|gb|EEL86011.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272] gi|228741668|gb|EEL91856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273] gi|228747675|gb|EEL97547.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048] Length = 138 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT DV++ E V E + + + +A Sbjct: 61 AYGGYVLSDQPVNITAGDVIRVLEGPISVVEMIEEEE--------PAQRQLWMRVRDAVQ 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E LVR Sbjct: 113 EVLDSTTLEDLVR 125 >gi|295690375|ref|YP_003594068.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432278|gb|ADG11450.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis ATCC 21756] Length = 139 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D P +A++ + + + L +AG V + +G GG RL RP Sbjct: 11 LHVLLHMA-QVDQPLTSEVLAKSMGTNPAVFRRTMAGLREAGYVRSGKGHGGGWRLGRPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128 DQIT+L + +A A + S DC + + L+ + +A F + Q +++ Sbjct: 70 DQITLLAIYEALNRPRLFAIGYRSDHPDCLIEQNVNAALSETMAQAEALFIERFGQVTLD 129 Query: 129 CL 130 L Sbjct: 130 QL 131 >gi|313894737|ref|ZP_07828298.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon 137 str. F0430] gi|312976646|gb|EFR42100.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon 137 str. F0430] Length = 149 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ + D S+ ++ + + + +IL L +AG++ +RG Sbjct: 1 MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRVMRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 R GG L RP +IT+ DV A ES F+ H+ P Sbjct: 61 REGGAYLVRPLSEITLADVFHAV-ESLGGDTLFSFHENPNP 100 >gi|284802803|ref|YP_003414668.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578] gi|284995945|ref|YP_003417713.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923] gi|315283437|ref|ZP_07871629.1| Rrf2 family protein [Listeria marthii FSL S4-120] gi|284058365|gb|ADB69306.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578] gi|284061412|gb|ADB72351.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923] gi|313612915|gb|EFR86865.1| Rrf2 family protein [Listeria marthii FSL S4-120] Length = 157 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92 ++ KIL+ LV +G++ +V G GG L + ++I +LD+V+A E +S + F Sbjct: 43 YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 102 Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + + + G +TS R A + + L + LV Sbjct: 103 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 141 >gi|120435758|ref|YP_861444.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] gi|117577908|emb|CAL66377.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] Length = 142 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR +Y A N + + +IA A E F KI+Q L K IV + +G Sbjct: 2 FSKACEYGIRATLYIAHQSQNGMRSNLGEIARAVNSPEAFTAKIMQKLSKNEIVASRKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101 GG P+ + ++ +V+A + C S + CPL Sbjct: 62 SGGF-FIDPSSKTKLIAIVQAIDGDLIYNGCGLGLQECSESLPCPL 106 >gi|118475517|ref|YP_892257.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus subsp. fetus 82-40] gi|118414743|gb|ABK83163.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus subsp. fetus 82-40] Length = 134 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + ++ IS+ FL KILQ L K GI+ + +G GG L I+I ++++ E Sbjct: 23 PKDVDTMSTELGISKSFLAKILQNLAKEGILNSFKGANGGFILANKPANISIKKILESAE 82 Query: 84 E-SFFVAECFASHKIDCP 100 + V EC ++ + DCP Sbjct: 83 KRKASVFEC-SNARSDCP 99 >gi|125975009|ref|YP_001038919.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005105|ref|ZP_05430075.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|125715234|gb|ABN53726.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|255990956|gb|EEU01068.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|316939170|gb|ADU73204.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 147 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A+++ + IAE ISE +L ++ L KA IV++++G Sbjct: 1 MKMSTKGRYGLRAMLDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L IT+ +++ E + V + Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVD 91 >gi|258542739|ref|YP_003188172.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256633817|dbj|BAH99792.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256636876|dbj|BAI02845.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256639929|dbj|BAI05891.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256642985|dbj|BAI08940.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646040|dbj|BAI11988.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649093|dbj|BAI15034.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652080|dbj|BAI18014.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655137|dbj|BAI21064.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] Length = 154 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L++ DY I +L+ + +A + E + K+L+ L G V + RG Sbjct: 2 LKLSRLADYAIVILVKLGEQEGVVTSPT-LAAITGVPEPTVAKVLKVLSAHGFVLSQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL RP I++ V+ A + + C + D + SCGL A Sbjct: 61 KGGYRLARPLADISVASVITAVDGKIALTACVDGGECDTGV--SCGLCGSWDTINQAIRT 118 Query: 121 VLTQYSIECLVRNRSS 136 L S+E + R+++S Sbjct: 119 TLEGISLESM-RSKAS 133 >gi|313205087|ref|YP_004043744.1| transcriptional regulator, badm/rrf2 family [Paludibacter propionicigenes WB4] gi|312444403|gb|ADQ80759.1| transcriptional regulator, BadM/Rrf2 family [Paludibacter propionicigenes WB4] Length = 147 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A D + + IA+ IS +L I+ L G++ +G Sbjct: 1 MRINTKIRYGLRTMIEIASSTDANGMLQKDIAKNQNISLKYLDPIISSLKLKGLIVNSKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R G RL R IT+LD+ A E+ V EC + + C + + N F Sbjct: 61 RGSGYRLTREPKDITMLDIYTAFEQ-IIVIECINNLGYCDRSMHDCKGRNYWNEFKNEFA 119 Query: 120 DVLTQYSIECLV 131 ++L ++E ++ Sbjct: 120 EMLRSKNLEQII 131 >gi|16801523|ref|NP_471791.1| hypothetical protein lin2461 [Listeria innocua Clip11262] gi|16804399|ref|NP_465884.1| hypothetical protein lmo2361 [Listeria monocytogenes EGD-e] gi|46908531|ref|YP_014920.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092459|ref|ZP_00230249.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|47097339|ref|ZP_00234894.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|217963540|ref|YP_002349218.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|224499040|ref|ZP_03667389.1| Rrf2 family protein [Listeria monocytogenes Finland 1988] gi|224503509|ref|ZP_03671816.1| Rrf2 family protein [Listeria monocytogenes FSL R2-561] gi|226224912|ref|YP_002759019.1| hypothetical protein Lm4b_02331 [Listeria monocytogenes Clip81459] gi|254825058|ref|ZP_05230059.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|254826814|ref|ZP_05231501.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|254831214|ref|ZP_05235869.1| hypothetical protein Lmon1_07647 [Listeria monocytogenes 10403S] gi|254854313|ref|ZP_05243661.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|254901113|ref|ZP_05261037.1| hypothetical protein LmonJ_14903 [Listeria monocytogenes J0161] gi|254914037|ref|ZP_05264049.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254933311|ref|ZP_05266670.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|254938352|ref|ZP_05270049.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|254992735|ref|ZP_05274925.1| hypothetical protein LmonocytoFSL_06501 [Listeria monocytogenes FSL J2-064] gi|255017809|ref|ZP_05289935.1| hypothetical protein LmonF_08865 [Listeria monocytogenes FSL F2-515] gi|255027001|ref|ZP_05298987.1| hypothetical protein LmonocytFSL_12903 [Listeria monocytogenes FSL J2-003] gi|255521538|ref|ZP_05388775.1| hypothetical protein LmonocFSL_10010 [Listeria monocytogenes FSL J1-175] gi|290893648|ref|ZP_06556630.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|300763892|ref|ZP_07073888.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] gi|16411849|emb|CAD00439.1| lmo2361 [Listeria monocytogenes EGD-e] gi|16414983|emb|CAC97688.1| lin2461 [Listeria innocua Clip11262] gi|46881803|gb|AAT05097.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47014290|gb|EAL05268.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|47019236|gb|EAL09979.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|217332810|gb|ACK38604.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|225877374|emb|CAS06088.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599191|gb|EEW12516.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|258607706|gb|EEW20314.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|258610965|gb|EEW23573.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|290556850|gb|EFD90382.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|293584871|gb|EFF96903.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|293592056|gb|EFG00391.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594300|gb|EFG02061.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|300515233|gb|EFK42284.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] gi|307571883|emb|CAR85062.1| HTH rrf2-type DNA-binding domain protein [Listeria monocytogenes L99] gi|313607154|gb|EFR83645.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208] gi|313617478|gb|EFR89842.1| Rrf2 family protein [Listeria innocua FSL S4-378] gi|313622624|gb|EFR93003.1| Rrf2 family protein [Listeria innocua FSL J1-023] gi|328465394|gb|EGF36641.1| hypothetical protein LM1816_13597 [Listeria monocytogenes 1816] gi|328471579|gb|EGF42459.1| hypothetical protein LM220_03882 [Listeria monocytogenes 220] Length = 156 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92 ++ KIL+ LV +G++ +V G GG L + ++I +LD+V+A E +S + F Sbjct: 42 YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 101 Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + + + G +TS R A + + L + LV Sbjct: 102 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 140 >gi|192359869|ref|YP_001981952.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio japonicus Ueda107] gi|190686034|gb|ACE83712.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio japonicus Ueda107] Length = 162 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P ++ I+ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDSGPVSLADISARQGISLSYLEQLFARLRQFNLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG +L I++ VV A ES C K +C G LT L + L+A Sbjct: 61 PGGGYQLASSTCDISVAQVVDAVSESLDATRCEG--KGNCQ-EGEVCLTHHLWQDLSAQI 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 L S+ LV RS I+ + Sbjct: 118 HQFLNSISLADLV-ARSDIQAV 138 >gi|197105185|ref|YP_002130562.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196478605|gb|ACG78133.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 144 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57 M L+ + Y + + A R +A+ E+ +L ++ L + G+V++ Sbjct: 1 MRLSTKGRYAVMAMADLARREGEAARAVALADIAARQEISLSYLEQLFARLRRKGLVKSA 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 RG GG RL R A+Q +I ++V A +E C + K Sbjct: 61 RGPGGGYRLARTAEQTSIAEIVHAVDEPLRATRCANAGK 99 >gi|56418891|ref|YP_146209.1| hypothetical protein GK0356 [Geobacillus kaustophilus HTA426] gi|56378733|dbj|BAD74641.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 138 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 13/110 (11%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA-----TEE 84 IA++ + + + +I+ L KAG+V+ VR GG L +P DQIT+LDV +A T++ Sbjct: 30 IAQSVNTNPVIIRRIMGMLKKAGLVD-VRPGVGGASLRKPPDQITLLDVYRAVGVVETDQ 88 Query: 85 SFFVAECFASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLV 131 F + E I CP VG L + L+ A A + L+Q +I L+ Sbjct: 89 LFRIHE---HPNIQCP-VGRNIEAVLQAELKAAQAAMEERLSQTTISRLI 134 >gi|168185784|ref|ZP_02620419.1| Rrf2 family protein [Clostridium botulinum C str. Eklund] gi|169296028|gb|EDS78161.1| Rrf2 family protein [Clostridium botulinum C str. Eklund] Length = 139 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R ++Y C + I+E+ I FL KIL+ L AGIVE+ RG Sbjct: 1 MKITQEVDYALRTVLYLCKLGYGEKIEAKNISESENIPIRFLLKILRKLKHAGIVESYRG 60 Query: 60 RRGGVRLCR 68 GG L + Sbjct: 61 VNGGYALNK 69 >gi|16080810|ref|NP_391638.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311722|ref|ZP_03593569.1| hypothetical protein Bsubs1_20306 [Bacillus subtilis subsp. subtilis str. 168] gi|221316048|ref|ZP_03597853.1| hypothetical protein BsubsN3_20217 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320959|ref|ZP_03602253.1| hypothetical protein BsubsJ_20160 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325244|ref|ZP_03606538.1| hypothetical protein BsubsS_20326 [Bacillus subtilis subsp. subtilis str. SMY] gi|6137293|sp|P71047|YWGB_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywgB gi|1561569|emb|CAB02493.1| unknown [Bacillus subtilis subsp. subtilis str. 168] gi|2636294|emb|CAB15785.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291486345|dbj|BAI87420.1| hypothetical protein BSNT_05747 [Bacillus subtilis subsp. natto BEST195] Length = 156 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 35/54 (64%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 I++ +S +L K+++ LV+AG+ E++ G +GG L +P IT+ DV +A E Sbjct: 31 ISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVE 84 >gi|289435629|ref|YP_003465501.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171873|emb|CBH28419.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632170|gb|EFR99244.1| Rrf2 family protein [Listeria seeligeri FSL N1-067] gi|313636561|gb|EFS02277.1| Rrf2 family protein [Listeria seeligeri FSL S4-171] Length = 156 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92 ++ KIL+ LV +G++ +V G GG L + ++I +LD+V+A E +S + F Sbjct: 42 YISKILRKLVVSGLINSVSGNNGGFTLAKNPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 101 Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + + + G +TS R A + + L + LV Sbjct: 102 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 140 >gi|251795969|ref|YP_003010700.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2] gi|247543595|gb|ACT00614.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2] Length = 133 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 KR +G++ L+ A + S+IAE L KIL LV+ GI+E +GR GG Sbjct: 5 KRFGFGVQALIVLASQTELLTS-SEIAERIHCEPTALRKILSQLVEGGIIEVKQGRTGGY 63 Query: 65 RLCRPADQITILDVVKATEES 85 +L + + +T+ +V K E Sbjct: 64 QLAKRPELVTLREVYKTVHEE 84 >gi|296117178|ref|ZP_06835771.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976273|gb|EFG83058.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 151 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L RT I +++ A H + N +S +IA+ ++ + +LQ L ++G++ VRG Sbjct: 4 LRDRTVTAIFIMLDIAFHGMHGNTVSATEIAQRSGMARRGIEPLLQVLSRSGLLSGVRGP 63 Query: 61 RGGVRLCRPADQITILDVVKA 81 GG RL PA +I + D+ +A Sbjct: 64 HGGYRLGHPAREILLSDIHQA 84 >gi|83594728|ref|YP_428480.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577642|gb|ABC24193.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 160 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 4/136 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++++ YG R L A RI IAE I FL +IL L G+V + RG+ G Sbjct: 2 ISQKAKYGFRALFALADAEGGQLRIEDIAERQRIPRKFLEQILLDLKHHGLVVSFRGKNG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118 G L R I+ +V++ + C + DC +C + V A + Sbjct: 62 GYALRRDPKDISFTEVLRLIDGPIAPLPCLSRTAYRACEDCEGETACRMRLVFGAAYDRM 121 Query: 119 FDVLTQYSIECLVRNR 134 +VL S+ + R Sbjct: 122 LEVLETTSLGDAMNGR 137 >gi|327191462|gb|EGE58484.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 162 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +AE + + +L K LQ L +A +V+T G GG RL R + +I LD+V+A E Sbjct: 31 LAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARASSEINFLDIVEAVE 84 >gi|83942219|ref|ZP_00954680.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. EE-36] gi|83846312|gb|EAP84188.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. EE-36] Length = 156 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPADRLVNLGDIATRQSISLPYLEQLFVKLRRADLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG RL RPA I ++D++ A +E Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDE 85 >gi|281418573|ref|ZP_06249592.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|281407657|gb|EFB37916.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] Length = 147 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ +M A+++ + IAE ISE +L ++ L KA IV++++G Sbjct: 1 MKMSTKGRYGLQAMMDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90 +GG L IT+ +++ E + V + Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVD 91 >gi|86608330|ref|YP_477092.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556872|gb|ABD01829.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 146 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +I +IA I + +L ++L L + G+V + RG +GG L R QI++LDV++A E Sbjct: 28 QIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGSKGGYFLARAPWQISLLDVIQAIE 85 >gi|188585903|ref|YP_001917448.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350590|gb|ACB84860.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 144 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 16/127 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ R+ + + +Y A+ +Y + +++A ISE +L ++ PL KA I+ + Sbjct: 1 MKVSTRSKWALACSLYYAV--NYSKEVIPLKTVSKALGISEKYLEQLSIPLKKADILAST 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG +GG +L ++IT+ V+ + E F + G L SV + Sbjct: 59 RGTQGGYKLKYHPEKITVYQVLSSIEPIHFGEDA-------SDQAGEKELLSV----TSE 107 Query: 118 FFDVLTQ 124 F+D L+Q Sbjct: 108 FWDELSQ 114 >gi|330817662|ref|YP_004361367.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3] gi|327370055|gb|AEA61411.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3] Length = 179 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R A +T+ D++ A +E +C Sbjct: 61 PGGGYNLARRAADVTVADIIIAVDEPLDATQC 92 >gi|313207165|ref|YP_004046342.1| transcriptional regulator, badm/rrf2 family [Riemerella anatipestifer DSM 15868] gi|312446481|gb|ADQ82836.1| transcriptional regulator, BadM/Rrf2 family [Riemerella anatipestifer DSM 15868] gi|315022434|gb|EFT35461.1| rrf2 family protein [Riemerella anatipestifer RA-YM] gi|325335395|gb|ADZ11669.1| transcriptional regulator, BadM/Rrf2 family protein [Riemerella anatipestifer RA-GD] Length = 145 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 11/142 (7%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR Y I + + +++ +A+ E F KIL L K IV +++G Sbjct: 2 FSKACEYGIRACAYITIESMQNRKVKVADVAKKVGTPEAFTAKILSALTKHNIVNSIKGP 61 Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAEC---FAS--HKIDCPLVGSCGLTSVLRKA 114 GG + A I I D+V A + ++ C F+S CPL SV R Sbjct: 62 YGGFEIGEQRAKSIKIKDIVIAIDGHSILSSCSLGFSSCDESNPCPL--HFKYVSV-RNE 118 Query: 115 LNAFFDVLTQYSIECLVRNRSS 136 L D T + + V+N+ S Sbjct: 119 LCKMLDTTTLFEMAIDVKNKKS 140 >gi|241206059|ref|YP_002977155.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859949|gb|ACS57616.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 154 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L ++E V + SI Sbjct: 122 IAAILDNMTLEQFVADGGSI 141 >gi|218680758|ref|ZP_03528655.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 122 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +A +V+T G GG RL R + + Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARSSSE 73 Query: 73 ITILDVVKATE 83 I LD+V+A E Sbjct: 74 INFLDIVEAVE 84 >gi|297199432|ref|ZP_06916829.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sviceus ATCC 29083] gi|197713030|gb|EDY57064.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sviceus ATCC 29083] Length = 152 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ P + IA I FL IL L + GIV++ RG Sbjct: 1 MRISARADYAVRAVLELAVRQGTEPVKAEAIAAVQDIPHKFLEGILGDLRRGGIVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG RL R A +T+ DV++A + Sbjct: 61 GGGGYRLAREASAVTVADVIRAVD 84 >gi|254431044|ref|ZP_05044747.1| Rrf2 family protein [Cyanobium sp. PCC 7001] gi|197625497|gb|EDY38056.1| Rrf2 family protein [Cyanobium sp. PCC 7001] Length = 144 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 43/81 (53%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L K T GIR L+ A + ++A A + E L ++L L +AG+V RGR G Sbjct: 2 LAKSTTDGIRALLELATVPERWRSGPELAAAQQLPEPMLEQLLLRLRRAGVVVARRGRLG 61 Query: 63 GVRLCRPADQITILDVVKATE 83 G RL RPA +I + V+ A + Sbjct: 62 GYRLARPAAEIRLATVIAALQ 82 >gi|158335568|ref|YP_001516740.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305809|gb|ABW27426.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina MBIC11017] Length = 145 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + +Y + L+ H P RI QIA I + +L ++L L ++G+V + R Sbjct: 1 MELSCKCEYAVLALLSLVDHYPQGEPLRIRQIAAQQHIPDRYLEQLLAILRRSGLVCSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G RGG L R +IT+L+++ E Sbjct: 61 GARGGYLLAREPWKITLLEIINCIE 85 >gi|213612431|ref|ZP_03370257.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 87 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 6 GENGGIRLGKPANTICIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSF 61 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 62 LKELDNYTLADLVEENQPLYKLL 84 >gi|124267450|ref|YP_001021454.1| BadM/Rrf2 family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260225|gb|ABM95219.1| transcriptional regulator, BadM/Rrf2 family [Methylibium petroleiphilum PM1] Length = 177 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALREHSGPVALAAISSRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L R A++IT+ D++ A +E C G C +T L +LN Sbjct: 61 PGGGYSLGRKAEEITVADIIVAVDEPIDATGCGGKENCMGEDSGRC-MTHDLWASLNTKM 119 Query: 119 FDVLTQYSIECLVRNR 134 + L S+ LV ++ Sbjct: 120 IEFLDSISLRKLVDDQ 135 >gi|315304491|ref|ZP_07874765.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] gi|313627139|gb|EFR95998.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] Length = 156 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92 ++ KIL+ LV +G++ +V G GG L + ++I +LD+V+A E +S + F Sbjct: 42 YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 101 Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + + + G +TS R A + + L + LV Sbjct: 102 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLAVLVE 140 >gi|254423512|ref|ZP_05037230.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7335] gi|196191001|gb|EDX85965.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7335] Length = 140 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + QIAE + +L K+L L ++ ++ +VRG +GG +L +P+ QI++ +++A ES Sbjct: 15 VRQIAERQQLPAPYLEKLLIELRRSRLINSVRGAQGGYQLAKPSSQISLGQILEAVGESA 74 Query: 87 --FVAECFASHKIDCPLVGSCGLTSVLRKALN 116 A +S + +TS+L LN Sbjct: 75 SSMTAMAVSSPDNSTQVQAEDWVTSMLWNRLN 106 >gi|163792642|ref|ZP_02186619.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] gi|159182347|gb|EDP66856.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] Length = 180 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT--EESFFV-----AECF 92 F+ K+L L KAG+V G RGG R+ R A+ IT+LDV A +++ F A C Sbjct: 42 FIQKLLTQLEKAGLVTGAEGIRGGWRMARAANAITVLDVADAAKGDDALFKCRNIRARCA 101 Query: 93 ASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 P + G C + +V+ A A L +++ +V Sbjct: 102 LWDDASPPQAAVSGVCSIHAVMLSAEAAMRQELAAHTLADIV 143 >gi|321313316|ref|YP_004205603.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|320019590|gb|ADV94576.1| putative transcriptional regulator [Bacillus subtilis BSn5] Length = 156 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 35/54 (64%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 I++ +S +L K+++ LV+AG+ E++ G +GG L +P IT+ DV +A E Sbjct: 31 ISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVE 84 >gi|294677664|ref|YP_003578279.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|6136499|sp|O68025|Y166_RHOCA RecName: Full=Putative HTH-type transcriptional regulator rrf2-like gi|3128259|gb|AAC16111.1| hypothetical protein [Rhodobacter capsulatus SB 1003] gi|294476484|gb|ADE85872.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus SB 1003] Length = 150 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +T++ Y ++ L+ A D P I +IA + FL IL L KAG+V ++R Sbjct: 2 ITQKMKYALKALLELADEARRDSPQALTIEEIATRSGTPKRFLEHILLDLRKAGVVASIR 61 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKA 114 GR GG L + ++I ++V+ + C + DC +C + V + Sbjct: 62 GRSGGYSLLKAPRDVSISELVRRIDGPIAPLPCLSRSAYQPCDDCHDEAACRIRKVFAEV 121 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142 ++ ++ ++E ++ + K+ Sbjct: 122 FWSYLVLIDSLTLEDMLAAGNPAAKLLE 149 >gi|320531098|ref|ZP_08032127.1| Rrf2 family protein [Selenomonas artemidis F0399] gi|320136680|gb|EFW28633.1| Rrf2 family protein [Selenomonas artemidis F0399] Length = 160 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ + D S+ ++ + + + +IL L +AG++ +RG Sbjct: 12 MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRIMRG 71 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 R GG L RP +IT+ DV A ES F+ H+ P Sbjct: 72 REGGAYLMRPLSEITLADVFHAV-ESLGGDTLFSFHENPNP 111 >gi|148378286|ref|YP_001252827.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|153933591|ref|YP_001382687.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|153936117|ref|YP_001386238.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|153937936|ref|YP_001389653.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|168177627|ref|ZP_02612291.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|170754327|ref|YP_001779938.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|226947508|ref|YP_002802599.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|148287770|emb|CAL81836.1| Rrf2-family transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152929635|gb|ABS35135.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|152932031|gb|ABS37530.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|152933832|gb|ABS39330.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|169119539|gb|ACA43375.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|182670341|gb|EDT82315.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|226842307|gb|ACO84973.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|295317743|gb|ADF98120.1| rrf2 family protein [Clostridium botulinum F str. 230613] gi|322804550|emb|CBZ02101.1| rrf2 family transcriptional regulator, group III [Clostridium botulinum H04402 065] Length = 143 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +++ L +AG+V + G Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKAL 115 GG L + DQIT+LDV +A + E F H I+CP+ + + VL A Sbjct: 61 -GGAYLLKDLDQITLLDVYRAV-DVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQ 118 Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139 A VL ++E +V R IKK Sbjct: 119 EAMEQVLENVTMEYIVTGIRKKIKK 143 >gi|28210311|ref|NP_781255.1| hypothetical protein CTC00575 [Clostridium tetani E88] gi|28202747|gb|AAO35192.1| conserved protein (RRF2 family protein) [Clostridium tetani E88] Length = 138 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M++T+ DYGIR ++ A + ++ IAE I FL K+L+ L++AGIV + RG Sbjct: 4 MNITQEADYGIRAVLILAKEGEGEKLDAKTIAERGNIPLRFLLKLLRKLIQAGIVRSYRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 GG L + ++ I + +V+++ + V C + C + LRK N F Sbjct: 64 VNGGYALNKHSEDINLKEVIESIDGPIAVNRCITDKDFCNAKKTEICVVHKELRKVQNIF 123 Query: 119 FDVLTQYSIECL 130 L + + L Sbjct: 124 VKELEKITFSKL 135 >gi|330990699|ref|ZP_08314655.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329762139|gb|EGG78627.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 79 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 58 RGRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RGR GGV L RP I + VV+ E E + C C L +C L + R+A + Sbjct: 4 RGRNGGVSLARPPKDINVGHVVRLMETEGEVIKGCAPLQGRPCVLADACRLRHLARQATD 63 Query: 117 AFFDVLTQYSIECLV 131 AF VL S+ L+ Sbjct: 64 AFMAVLDGMSVHDLL 78 >gi|257054249|ref|YP_003132081.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256584121|gb|ACU95254.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 156 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 6/103 (5%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 D P +++A+ + +L K LQ L + I+ +V G RGG RL R +I++LDVV A Sbjct: 21 DEPVSTARLADIYRLPSAYLNKQLQALAREKILVSVPGARGGFRLARDPAEISLLDVVVA 80 Query: 82 TE---ESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAF 118 E E+F A+ + P V C ++ +R+A A+ Sbjct: 81 VEGKAEAFRCAQILRNGPGGDPDVDYSSYCVVSQSMRRAELAW 123 >gi|194289994|ref|YP_002005901.1| transcriptional regulator hth rrf2-type DNA-binding domain [Cupriavidus taiwanensis LMG 19424] gi|193223829|emb|CAQ69836.1| putative transcriptional regulator, HTH rrf2-type DNA-binding domain [Cupriavidus taiwanensis LMG 19424] Length = 144 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG+V T G Sbjct: 1 MSTSSRFAVAVHILTLLA-SSAEPLPSSLIAGSVGTNPALIRRLVGQLAEAGLVATTMGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 GG L RPA IT+L+V + E + +A ++ C LVG +T LRK Sbjct: 60 TGGATLARPAASITLLEVFRVVETTALIALHQSAPNPAC-LVGRE-ITGALRK 110 >gi|167745831|ref|ZP_02417958.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662] gi|317470556|ref|ZP_07929944.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|167654695|gb|EDR98824.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662] gi|316902071|gb|EFV23997.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 137 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +++ TDY +R+L A+ + I +I + F ++I++ L AG + RG Sbjct: 1 MLISRETDYALRILR--ALSDGKKRSIEEICSLEATPKQFAYRIIKKLETAGWIIITRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG RL I++ +++ F + CF Sbjct: 59 EGGCRLTADLHDISLFQLMQGLGSGFGINACF 90 >gi|154148775|ref|YP_001406452.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis ATCC BAA-381] gi|153804784|gb|ABS51791.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis ATCC BAA-381] Length = 137 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTKR Y +++ + + P I IA+ S+ +L + + L KAG+++ +RG Sbjct: 4 LTKRGVYAAIIMLEISKGDKTAPVSIKSIADTLGKSKNYLEQAINALRKAGLIKALRGPN 63 Query: 62 GGVRLCRPADQITILDVVKATE 83 GG L + ++IT D+ ATE Sbjct: 64 GGYFLLKKPNEITFGDIFNATE 85 >gi|330992283|ref|ZP_08316231.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp. SXCC-1] gi|329760482|gb|EGG76978.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp. SXCC-1] Length = 149 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 1 MH-LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 MH + +RT + +++ A + + P +IAE ++ L ILQ L +AG+++ V Sbjct: 1 MHSIRERTAIALVIMLDVAFYGTAERPVSTIEIAERSSLARRGLEPILQGLARAGLLKGV 60 Query: 58 RGRRGGVRLCRPADQITILDV 78 RG GG RL PA +I + D+ Sbjct: 61 RGPHGGYRLALPAREILLSDI 81 >gi|255262381|ref|ZP_05341723.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] gi|255104716|gb|EET47390.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] Length = 134 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + IA + + + ++L L +AG++ + +G GG +L R + IT+ DV A +ES Sbjct: 28 ADIANHAGTNPVVVRRVLGKLREAGMLTSEKGHAGGWKLARAPETITLADVYLALDESLI 87 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 E D P V SC + + L + + Q IE L Sbjct: 88 ATET------DNP-VSSCSVENALHHRVTGVMRDIEQSLIERL 123 >gi|223040323|ref|ZP_03610599.1| RRF2 family protein [Campylobacter rectus RM3267] gi|222878392|gb|EEF13497.1| RRF2 family protein [Campylobacter rectus RM3267] Length = 138 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + ++ I +L+ C D N +A + + + I++ L A ++ G Sbjct: 1 MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTVGTNPVIVRNIIRLLKSANLINVSAGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVG--SCGLTSVLRKAL 115 GG L + DQIT+ D+ A E F HK CPL G LT A Sbjct: 61 -GGASLAKKPDQITLFDIFSAVNEG--ENGIFKIHKNSPPPCPLGGRIEALLTPKFASAQ 117 Query: 116 NAFFDVLTQYSIECLV 131 A FD L +++ L+ Sbjct: 118 RAMFDSLAGVNLQNLL 133 >gi|170760968|ref|YP_001785621.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407957|gb|ACA56368.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] Length = 143 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +++ L KAG+V + G Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKKAGLVSVIAGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKAL 115 GG L + DQIT+LDV +A E E F H I+CP+ + + +L A Sbjct: 61 -GGAYLLKDLDQITLLDVYRAV-EVVKEGELFQFHDSPNINCPIGANIQSVMEGILLNAQ 118 Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139 A VL ++E +V R I+K Sbjct: 119 EAMEQVLENVTMEYVVAGIRKKIEK 143 >gi|110597184|ref|ZP_01385473.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] gi|110341375|gb|EAT59840.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] Length = 140 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 46/95 (48%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LTK TDY IR L+ A IA I FL ++LQ +++ ++ + G RG Sbjct: 4 LTKNTDYAIRALLALAAEKGSYLSAKAIASGQDIPYQFLRRLLQEMIRHNLIVSKEGARG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 G L + D IT+ +++ + V+EC +I Sbjct: 64 GFMLEKDPDAITVTQLIEIFQGKVQVSECMFRKQI 98 >gi|229552795|ref|ZP_04441520.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540586|ref|YP_003175085.1| transcriptional regulator Rrf2 family [Lactobacillus rhamnosus Lc 705] gi|229313777|gb|EEN79750.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152262|emb|CAR91234.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus Lc 705] Length = 146 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 13/124 (10%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A H DY + I +I+E I + KI L K+GI+ + G GG+RL + IT+ + Sbjct: 23 AQHEDYLS-IQKISEMLNIPVPSIKKISSTLKKSGILTSKTGLNGGLRLAKTPQTITVYE 81 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCG---------LTSVLRKALNAFFDVLTQYSIE 128 ++ A E + A F H+ P G T+VL +A +A VL Q SI Sbjct: 82 ILTAIEGT---APLFKLHQEIDPAAFVNGERVTSWLTASTNVLNRAEDAMVQVLKQTSIA 138 Query: 129 CLVR 132 L Sbjct: 139 DLAE 142 >gi|154484942|ref|ZP_02027390.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC 27560] gi|149733895|gb|EDM50014.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC 27560] Length = 143 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 NDY +A + ++ + + KIL L A ++E RG GG ++ RP ++IT+LDV Sbjct: 21 ENDYKITSDFLAGSTNVNPVIIRKILGQLKGADLIEVARGT-GGAKITRPLNEITLLDVY 79 Query: 80 KATE 83 KA E Sbjct: 80 KAVE 83 >gi|23014795|ref|ZP_00054594.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 136 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T + ++ A D ++IAE IS L K+L+ L + G+VE VRG Sbjct: 1 MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60 Query: 61 RGGVRLCRPADQITILDVVK 80 GG R + T+LD+++ Sbjct: 61 GGGYRFSGNRRRTTLLDIIQ 80 >gi|90021059|ref|YP_526886.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950659|gb|ABD80674.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus degradans 2-40] Length = 164 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+ IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQSGPVSLADISRRQQISLSYLEQLFAKLRQSTLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG +L R A + + ++ A ES C Sbjct: 61 PGGGYKLNRSAADVHVAQIIDAVNESVDATNC 92 >gi|154252525|ref|YP_001413349.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156475|gb|ABS63692.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 148 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++ Y ++ ++ A + + + IAE + FL IL L K G+V + RG+ Sbjct: 2 LSQKAKYALKAMIALATQEEGDLLQAADIAERQNVPRKFLELILLDLRKHGLVRSQRGKF 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC--FASHK--IDCPLVGSCGLTSVLRKALNA 117 GG L +PAD IT V++ + C ++ DC SC + +R+ +A Sbjct: 62 GGYALAKPADAITFGQVIRIMDGPLAPIPCASLTGYRRCADCRDEKSCAVRRTMREVRDA 121 Query: 118 FFDVLTQYSI 127 +L +I Sbjct: 122 AAAILDGTTI 131 >gi|83309299|ref|YP_419563.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944140|dbj|BAE49004.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 151 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +K+ + I ++ A H P + +I I +L + LQ LV+AGI+ VRG RG Sbjct: 5 SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRAGILVGVRGPRG 64 Query: 63 GVRLCRPADQITILDVVK 80 G RL R +I++ +VV+ Sbjct: 65 GYRLARERRRISVGEVVR 82 >gi|163783457|ref|ZP_02178448.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1] gi|159881221|gb|EDP74734.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1] Length = 144 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H D + +IA+A I + FL KIL L + ++ +V+G +GG L +++T+ DVV Sbjct: 20 HRDRLVKADEIAKAQNIPKPFLSKILHELARRDVLHSVKGPKGGFALKTDPEKLTMWDVV 79 Query: 80 KATEESFFVAEC 91 E + C Sbjct: 80 SLMGEDYRFQAC 91 >gi|317123685|ref|YP_004097797.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Intrasporangium calvum DSM 43043] gi|315587773|gb|ADU47070.1| transcriptional regulator, BadM/Rrf2 family [Intrasporangium calvum DSM 43043] Length = 154 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ R DY +R +L A P I +A + FL I L +A +V + Sbjct: 1 MDISARVDYAVRAMLILAEAAASGSGPVSIEALATEQELPRKFLEAIFADLRRAELVLSR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RP +I++ DV +A + H+ V L S+ + Sbjct: 61 RGALGGYALARPQREISVGDVFRAVDGPLAEVRGLRPHETSYAGVAQH-LPSLWVAVRAS 119 Query: 118 FFDVLTQYSIECL 130 +VL S+E L Sbjct: 120 LREVLDGTSLEAL 132 >gi|309779547|ref|ZP_07674308.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA] gi|308921788|gb|EFP67424.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA] Length = 145 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLA-SAEGPVPSSLIAGSVGTNPALIRRLVAQLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GG L RPAD+IT+LDV + E +A Sbjct: 60 TGGATLARPADRITLLDVFRVVEAPVLIA 88 >gi|78063394|ref|YP_373302.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|77971279|gb|ABB12658.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] Length = 163 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA C + + + ++L L G V++ +G G Sbjct: 19 RTDSRLSRMLHALIHMDQVDGPMTSEAIATMLCTNPVVVRRLLGGLRDRGYVQSEKGHGG 78 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 G L D IT+LDV +A E ++ + +C + + L++ L++A Sbjct: 79 GWVLSVALDDITLLDVYRAVGEPPLFSDLVTDDEAECLVEQAVNAHLSATLKEAETTLLA 138 Query: 121 VLTQYSIECLVRN 133 + ++ L R+ Sbjct: 139 RFGEVTLGMLSRD 151 >gi|83955454|ref|ZP_00964085.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. NAS-14.1] gi|83840098|gb|EAP79273.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. NAS-14.1] Length = 156 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPADRLVNLGDIAARQSISLPYLEQLFVKLRRAELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG RL RPA I ++D++ A +E Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDE 85 >gi|255037279|ref|YP_003087900.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] gi|254950035|gb|ACT94735.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] Length = 147 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+ Y ++ L A + P IS IAE I + FL IL L G++++ +G+ Sbjct: 2 ISKKAKYALKALKVLAEQYGKGPVLISYIAEKEKIPKKFLEAILLDLRNNGVLQSQKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L P ++ V++ + A C F DC +C L +VL + +A Sbjct: 62 GGYLLRVPPGEVNFSKVLRIIDGPIAPALCVSMFFYGKCDDCKDEETCSLRTVLERWRDA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL + ++ L++ ++ Sbjct: 122 NLAVLDKTTLSDLLQAENA 140 >gi|206562460|ref|YP_002233223.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198038500|emb|CAR54458.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 146 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA C + + + ++L L G V++ +G G Sbjct: 2 RTDSRLSRMLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 G L D IT+LDV +A E ++ ++C + + L++ L++A + Sbjct: 62 GWALSVALDDITLLDVYRAVGEPPLFSDLVPEDALECLVEQAVNAHLSATLKEAEASLLA 121 Query: 121 VLTQYSIECLVRN 133 + ++ L R+ Sbjct: 122 RFGEVTLGMLSRD 134 >gi|332687403|ref|YP_004457176.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371412|dbj|BAK22367.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC 35311] Length = 141 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 44/87 (50%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +++ + +D + +I++ +S +L KI + L A ++ ++ + GG L + D+ Sbjct: 14 IMILAKLPDDGALKSQEISQRMNVSHSYLLKIAKKLKDAELINSIASKTGGYVLNKSVDK 73 Query: 73 ITILDVVKATEESFFVAECFASHKIDC 99 I+ LD++ ATE E H ID Sbjct: 74 ISFLDILHATEGKNSFIEGIDFHPIDS 100 >gi|170697290|ref|ZP_02888384.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|170137910|gb|EDT06144.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] Length = 146 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA C + + + ++L L +G V++ +G G Sbjct: 2 RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA---LNA 117 G L D IT+LDV +A E ++ + +C + + L++ L++A L A Sbjct: 62 GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLLA 121 Query: 118 FFDVLT 123 FD +T Sbjct: 122 RFDEVT 127 >gi|78187526|ref|YP_375569.1| hypothetical protein Plut_1672 [Chlorobium luteolum DSM 273] gi|78167428|gb|ABB24526.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum DSM 273] Length = 177 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 45/95 (47%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L K TDY +R L+ A IA I FL ++LQ L++ +V + G G Sbjct: 24 LNKNTDYAVRALLSLAGSQGVYLSAKTIATEQDIPYQFLRRLLQELIRHRLVVSREGASG 83 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 G +L R D I + ++++ + V+EC K+ Sbjct: 84 GFKLDRDPDGIALRELIEIFQGPVQVSECLFRKKL 118 >gi|118445083|ref|YP_879134.1| rrf2 family protein ( transcriptional regulator) [Clostridium novyi NT] gi|118135539|gb|ABK62583.1| rrf2 family protein (putative transcriptional regulator) [Clostridium novyi NT] Length = 139 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R ++Y C + I+E I FL KIL+ L AGIVE+ RG Sbjct: 1 MKITQEVDYALRTVLYLCKLGYGEKIEAKNISETENIPIRFLLKILRKLKHAGIVESYRG 60 Query: 60 RRGGVRLCR 68 GG L + Sbjct: 61 VNGGYALNK 69 >gi|83312490|ref|YP_422754.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82947331|dbj|BAE52195.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 136 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T + ++ A D ++IAE IS L K+L+ L + G+VE VRG Sbjct: 1 MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60 Query: 61 RGGVRLCRPADQITILDVVK 80 GG R + T+LD+++ Sbjct: 61 GGGYRFSGNRRRTTLLDIIQ 80 >gi|237747556|ref|ZP_04578036.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229378918|gb|EEO29009.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 155 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ H + P ++ I+E IS +L ++ L + +V+++RG Sbjct: 1 MRLTTKGRFAVTAMIDLTRHQETGPVSLAGISERQDISVAYLEQLFSKLRRKNLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L A IT+ D+V A +E V C Sbjct: 61 PGGGYILANDAADITVADIVFAVDEPLDVTRC 92 >gi|188997194|ref|YP_001931445.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932261|gb|ACD66891.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium sp. YO3AOP1] Length = 142 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 IR L+Y AI N N +S +IAE + +L K +Q LVK+GI+E+ RG +GG+ + Sbjct: 10 IRALIYLAI-NQEKNYVSVKEIAEKLNLPFHYLAKNVQKLVKSGILESYRGPKGGIVFKQ 68 Query: 69 P 69 P Sbjct: 69 P 69 >gi|171911244|ref|ZP_02926714.1| hypothetical protein VspiD_08720 [Verrucomicrobium spinosum DSM 4136] Length = 137 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++K+ +Y +R VL I +AE I FL +IL L K GI+ + RG Sbjct: 1 MKISKKAEYALRAVLAMSRSATGTIFSIQSLAEEERIPLKFLEQILLILRKGGIMHSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 GG +L RPA +IT+ ++++ Sbjct: 61 AGGGYQLVRPASRITVGEILE 81 >gi|34581609|ref|ZP_00143089.1| hypothetical protein [Rickettsia sibirica 246] gi|28262994|gb|EAA26498.1| unknown [Rickettsia sibirica 246] Length = 128 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +++++ IS +L +I L KA +V+ +RG +GG L ++I I D++ A Sbjct: 14 PVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYILIGNLEEIKISDIMDAVN 73 Query: 84 ESFFVAECF 92 E+F + C+ Sbjct: 74 ENFIMTTCY 82 >gi|304311762|ref|YP_003811360.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] gi|301797495|emb|CBL45715.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] Length = 156 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 9/106 (8%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + + K TDY + +LM C A R+ +A+ + + + K++ LV A +V + RG Sbjct: 2 LRIGKLTDYAL-ILMNCMATRPAQLWRMELLADTTRLPQPTVRKLMGQLVAANLVRSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 RGG +L R + I++ +++ A E + EC C +V SC Sbjct: 61 ARGGYQLSRLPNLISMAEIIIAIEGPIAITEC-------CEVVPSC 99 >gi|167748199|ref|ZP_02420326.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662] gi|167652191|gb|EDR96320.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662] Length = 184 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + + L+ A D +AE+ + + + I L KAGI+ RG Sbjct: 13 MRVSTQFTIAVHALIMIAYFPDIRVTSEMVAESVGNNPVIIRNIYGKLKKAGILSIQRG- 71 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--------LR 112 G L + A++IT+ DV +A E V E F K L G+C + S L+ Sbjct: 72 TGATSLTKTANEITLWDVYQAVETD-AVDEIF---KFSDTLSGACPVGSSIKELLFIHLQ 127 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 +A+N+ D L++ +IE L R I++ +N Sbjct: 128 EAVNSLKDSLSKTTIEEL---RFEIERHYN 154 >gi|291008165|ref|ZP_06566138.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 150 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 6 RTDYGIRVLMYCAIH-NDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++V+++ A+ D +S Q+A + + K+L PL G+V +GR G Sbjct: 8 RFSRALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAG 67 Query: 63 GVRLCRPADQITILDVVK 80 G RL RPAD+IT+ ++ + Sbjct: 68 GARLGRPADRITLAEIYR 85 >gi|253576663|ref|ZP_04853990.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843873|gb|EES71894.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 145 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 13/147 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R I +L I D IA + + + + +I+ L KAG+VE VR Sbjct: 1 MTISSRFSVAIHILSLLEISKDEICTSEYIAGSVNTNPVVIRRIMGMLSKAGLVE-VRTG 59 Query: 61 RGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCP--LVG---SCGLTSVLR 112 G +L R DQIT+LDV +A EE FA H P LVG + + Sbjct: 60 VAGAKLSRQLDQITLLDVYRAVHVVEEDGL----FAVHDQTNPDCLVGKNIQAAIEPIFS 115 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139 KA A + L +++ +V S + Sbjct: 116 KAQKAMENTLAAVTLQDVVNEISVVNN 142 >gi|86358381|ref|YP_470273.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282483|gb|ABC91546.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 162 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +A +V+T G GG RL R + Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARSPSE 73 Query: 73 ITILDVVKATE 83 I LD+V+A E Sbjct: 74 INFLDIVEAVE 84 >gi|186685046|ref|YP_001868242.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467498|gb|ACC83299.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 145 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 16/118 (13%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ D PNR +L ++L L + G+++++RG +GG L R +IT+LD Sbjct: 33 AVLQDIPNR-------------YLEQLLATLRRGGLIKSIRGAKGGYVLARDPGKITVLD 79 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 E S V S + G + V ++A A VL +Y+++ L RS Sbjct: 80 AFSCMEGSDIVVS--DSEPTPNTVEGEL-IQEVWQEARQAANSVLEKYTLQDLCERRS 134 >gi|330820621|ref|YP_004349483.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] gi|327372616|gb|AEA63971.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] Length = 148 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH + P IA C + + + ++L L AG V++ +G G Sbjct: 2 RTDSRLSRMLHALIHMNRAEGPLTSEAIAAMLCTNAVVVRRLLGGLRDAGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G L D IT+LDV +A E +E + C Sbjct: 62 GWTLAVSLDAITLLDVYRAVGEPPLFSELVSEDDPQC 98 >gi|144901312|emb|CAM78176.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 140 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 2/99 (2%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 + + P IA + + + + ++L L KAG+V ++RG GG L + + IT+LD Sbjct: 18 GMSDGQPLTSDWIAGSVNTNPVVIRRLLSSLAKAGLVTSIRGSNGGSVLAQLPEAITLLD 77 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 + +A +E A CP VG G+ VLR+ ++ Sbjct: 78 IQRAVDEDTEPALHNQPPNQKCP-VGR-GIQPVLRRVID 114 >gi|134101553|ref|YP_001107214.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914176|emb|CAM04289.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora erythraea NRRL 2338] Length = 146 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 6 RTDYGIRVLMYCAIH-NDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++V+++ A+ D +S Q+A + + K+L PL G+V +GR G Sbjct: 4 RFSRALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAG 63 Query: 63 GVRLCRPADQITILDVVK 80 G RL RPAD+IT+ ++ + Sbjct: 64 GARLGRPADRITLAEIYR 81 >gi|325971574|ref|YP_004247765.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta sp. Buddy] gi|324026812|gb|ADY13571.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy] Length = 138 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YG+R+L+ A H N+ P ++ +A+ +SE +L ++ L + G + +V+G Sbjct: 1 MKISTRGRYGLRLLVDIAEHSNEGPIALTVVAKRQDLSEKYLQQVALLLTRGGFLTSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L R + I DV+ E Sbjct: 61 SGGGYLLERSPASMMIYDVLDLLE 84 >gi|294788961|ref|ZP_06754201.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella muelleri ATCC 29453] gi|294483063|gb|EFG30750.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella muelleri ATCC 29453] Length = 148 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ D+ +++ I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQDHAVKLNAISERQHISLSYLEQLFSKLRRAGLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L + ADQI I ++ A E+ C S K +C C L + L +N Sbjct: 61 PGGGYILGKAADQINIAQIIAAAEDCLDATLC--SGKANCQSGSPCLTHNLWANLNHTIN 118 Query: 117 AFFDVLTQYSI 127 ++ +T S+ Sbjct: 119 SYLSSITLASL 129 >gi|15608427|ref|NP_215803.1| hypothetical protein Rv1287 [Mycobacterium tuberculosis H37Rv] gi|15840735|ref|NP_335772.1| hypothetical protein MT1325 [Mycobacterium tuberculosis CDC1551] gi|31792479|ref|NP_854972.1| hypothetical protein Mb1318 [Mycobacterium bovis AF2122/97] gi|121637215|ref|YP_977438.1| hypothetical protein BCG_1346 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661074|ref|YP_001282597.1| hypothetical protein MRA_1295 [Mycobacterium tuberculosis H37Ra] gi|148822504|ref|YP_001287258.1| hypothetical protein TBFG_11313 [Mycobacterium tuberculosis F11] gi|167969611|ref|ZP_02551888.1| hypothetical protein MtubH3_16956 [Mycobacterium tuberculosis H37Ra] gi|215403126|ref|ZP_03415307.1| hypothetical protein Mtub0_05401 [Mycobacterium tuberculosis 02_1987] gi|215410923|ref|ZP_03419731.1| hypothetical protein Mtub9_06240 [Mycobacterium tuberculosis 94_M4241A] gi|215426606|ref|ZP_03424525.1| hypothetical protein MtubT9_09527 [Mycobacterium tuberculosis T92] gi|215430171|ref|ZP_03428090.1| hypothetical protein MtubE_05718 [Mycobacterium tuberculosis EAS054] gi|215445463|ref|ZP_03432215.1| hypothetical protein MtubT_05813 [Mycobacterium tuberculosis T85] gi|218752991|ref|ZP_03531787.1| hypothetical protein MtubG1_05905 [Mycobacterium tuberculosis GM 1503] gi|219557185|ref|ZP_03536261.1| hypothetical protein MtubT1_07730 [Mycobacterium tuberculosis T17] gi|224989690|ref|YP_002644377.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo 172] gi|253799668|ref|YP_003032669.1| hypothetical protein TBMG_02694 [Mycobacterium tuberculosis KZN 1435] gi|254231544|ref|ZP_04924871.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254364183|ref|ZP_04980229.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254550293|ref|ZP_05140740.1| hypothetical protein Mtube_07514 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186223|ref|ZP_05763697.1| hypothetical protein MtubCP_09373 [Mycobacterium tuberculosis CPHL_A] gi|260200337|ref|ZP_05767828.1| hypothetical protein MtubT4_09463 [Mycobacterium tuberculosis T46] gi|260204542|ref|ZP_05772033.1| hypothetical protein MtubK8_09578 [Mycobacterium tuberculosis K85] gi|289442725|ref|ZP_06432469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289446881|ref|ZP_06436625.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A] gi|289554924|ref|ZP_06444134.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289569296|ref|ZP_06449523.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289573949|ref|ZP_06454176.1| Rrf2 family protein [Mycobacterium tuberculosis K85] gi|289745032|ref|ZP_06504410.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289749839|ref|ZP_06509217.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289753363|ref|ZP_06512741.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289757386|ref|ZP_06516764.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289761441|ref|ZP_06520819.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994844|ref|ZP_06800535.1| hypothetical protein Mtub2_10117 [Mycobacterium tuberculosis 210] gi|297633836|ref|ZP_06951616.1| hypothetical protein MtubK4_06924 [Mycobacterium tuberculosis KZN 4207] gi|297730823|ref|ZP_06959941.1| hypothetical protein MtubKR_07014 [Mycobacterium tuberculosis KZN R506] gi|298524790|ref|ZP_07012199.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775455|ref|ZP_07413792.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis SUMu001] gi|306781632|ref|ZP_07419969.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis SUMu002] gi|306784008|ref|ZP_07422330.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis SUMu003] gi|306807174|ref|ZP_07443842.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis SUMu007] gi|306967373|ref|ZP_07480034.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis SUMu009] gi|307079278|ref|ZP_07488448.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis SUMu011] gi|307083848|ref|ZP_07492961.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis SUMu012] gi|313658155|ref|ZP_07815035.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|54040094|sp|P67160|Y1318_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb1318 gi|54042641|sp|P67159|Y1287_MYCTU RecName: Full=Putative HTH-type transcriptional regulator Rv1287/MT1325 gi|1322411|emb|CAA97753.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880926|gb|AAK45586.1| Rrf2 family protein [Mycobacterium tuberculosis CDC1551] gi|31618068|emb|CAD94179.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121492862|emb|CAL71333.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600603|gb|EAY59613.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134149697|gb|EBA41742.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148505226|gb|ABQ73035.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148721031|gb|ABR05656.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224772803|dbj|BAH25609.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo 172] gi|253321171|gb|ACT25774.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289415644|gb|EFD12884.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289419839|gb|EFD17040.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A] gi|289439556|gb|EFD22049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289538380|gb|EFD42958.1| Rrf2 family protein [Mycobacterium tuberculosis K85] gi|289543050|gb|EFD46698.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685560|gb|EFD53048.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289690426|gb|EFD57855.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289693950|gb|EFD61379.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289708947|gb|EFD72963.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289712950|gb|EFD76962.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298494584|gb|EFI29878.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216075|gb|EFO75474.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis SUMu001] gi|308325593|gb|EFP14444.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis SUMu002] gi|308331243|gb|EFP20094.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis SUMu003] gi|308346415|gb|EFP35266.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis SUMu007] gi|308354987|gb|EFP43838.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis SUMu009] gi|308362898|gb|EFP51749.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis SUMu011] gi|308366483|gb|EFP55334.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis SUMu012] gi|323720243|gb|EGB29342.1| hypothetical protein TMMG_01982 [Mycobacterium tuberculosis CDC1551A] gi|326902908|gb|EGE49841.1| hypothetical protein TBPG_00763 [Mycobacterium tuberculosis W-148] gi|328459414|gb|AEB04837.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 161 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + + +A A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVK 80 R GG L RP +I+I DV++ Sbjct: 61 REGGYELARPGTEISIADVLR 81 >gi|300312800|ref|YP_003776892.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075585|gb|ADJ64984.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 147 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 41/86 (47%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L++ D P +IA + + + + L +AGIV + +G Sbjct: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESF 86 GG L RP ++I++L V +A E Sbjct: 61 GGGWSLARPMEEISLLQVQQALGERL 86 >gi|58038586|ref|YP_190550.1| putative transcriptional regulator [Gluconobacter oxydans 621H] gi|58001000|gb|AAW59894.1| Putative transcriptional regulator [Gluconobacter oxydans 621H] Length = 160 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L+K DY +L++ H + +A + E + K+L+ L +G+V + RG Sbjct: 2 LRLSKLADYATVLLVHLGRHEGLAT-AAALAVETGVPEPTVAKLLKGLASSGLVLSHRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL + +T+ V+ A + + C +C CGL+ +A Sbjct: 61 RGGYRLSSELETVTVATVIAAVDGPIAITACCDGR--ECEHSSLCGLSGQWDVVNDAILK 118 Query: 121 VLTQYSIECLVRN 133 L ++ + R+ Sbjct: 119 TLNSITLADMGRH 131 >gi|84503551|ref|ZP_01001602.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola batsensis HTCC2597] gi|84388041|gb|EAQ01089.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola batsensis HTCC2597] Length = 165 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + +S +A+ IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPEGGLVTLSDVAKRQNISLPYLEQLFVKLRRAEVVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 GG RL RPA +I +++V+ A +E+ Sbjct: 61 PGGGYRLARPAAEIRVIEVLAAVDETI 87 >gi|207724271|ref|YP_002254668.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum MolK2] gi|206589487|emb|CAQ36448.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum MolK2] Length = 143 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GG L RPAD+IT+LDV + E +A Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIA 88 >gi|255322125|ref|ZP_05363272.1| RRF2 family protein [Campylobacter showae RM3277] gi|255300823|gb|EET80093.1| RRF2 family protein [Campylobacter showae RM3277] Length = 151 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + ++ I +L+ C D N +A + + + I++ L A ++ G Sbjct: 12 MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTIGTNPVIVRNIIRLLKSANLINVSAGT 71 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVG--SCGLTSVLRKAL 115 GG L + +QIT+ D+ A E + F HK CPL G LT A Sbjct: 72 -GGASLAKKPEQITLFDIFSAVNEG--ENDIFKIHKNSPPPCPLGGRIEALLTPKFGSAQ 128 Query: 116 NAFFDVLTQYSIECLV 131 A FD L +++ L+ Sbjct: 129 QAMFDSLAGVNLQNLL 144 >gi|149370370|ref|ZP_01890059.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified eubacterium SCB49] gi|149355921|gb|EDM44478.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified eubacterium SCB49] Length = 144 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K YGI+ +Y A + R S +IAEA F K+LQ L KA I+ +G Sbjct: 2 FSKTCRYGIKATIYIAQQSQEGKRASLKEIAEAIDSPVAFTAKVLQFLSKAAIINATKGF 61 Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAEC 91 GG + + ++IT+ +VKA + EC Sbjct: 62 NGGYSIEKELLEKITLKQIVKAIDGDQLFEEC 93 >gi|153209325|ref|ZP_01947344.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat Q177'] gi|212218766|ref|YP_002305553.1| cysteine desulfurase activator complex subunit SufB [Coxiella burnetii CbuK_Q154] gi|120575396|gb|EAX32020.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat Q177'] gi|212013028|gb|ACJ20408.1| ABC transporter-associated protein [Coxiella burnetii CbuK_Q154] Length = 631 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +++ DY V+ A +QIA +S + K+L+ L + +V + RG Sbjct: 2 LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L R I+I D++ A + + EC + C CG+ + FD Sbjct: 62 NGGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFD 120 Query: 121 VL 122 VL Sbjct: 121 VL 122 >gi|312194978|ref|YP_004015039.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c] gi|311226314|gb|ADP79169.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c] Length = 151 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A + + +A A + FL IL L ++G+V + RG Sbjct: 1 MQISARADYALRALLTLAASDGGLVKGETLASAQDLPLRFLENILTDLRRSGLVASRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG +L RPA +I + V++AT+ Sbjct: 61 EGGYQLARPAAEIDVATVIRATD 83 >gi|295835500|ref|ZP_06822433.1| Rrf2 family protein [Streptomyces sp. SPB74] gi|197698596|gb|EDY45529.1| Rrf2 family protein [Streptomyces sp. SPB74] Length = 156 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 QIA + + + + ++L + +AG+V + RG G RL RP + +T+ DV +A E S Sbjct: 31 EQIAGSVNTNPVVIRRLLGRMREAGLVCSRRGSDAGWRLLRPLESMTLRDVYEAIEPSPL 90 Query: 88 VAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 A +CP+ CG+ +R +A A L + +++ ++R+ +++ A Sbjct: 91 FELHRAEPNPECPV--GCGIKPAMRTVYDRAEEAVRAELGRVTLDEVLRDVLAVRGPAGA 148 >gi|2226146|emb|CAA74438.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] Length = 57 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 ECF ++K C + CGL VL +AL A+ VL +Y++ LV+N+ I K+ Sbjct: 2 ECFDANKNLCVISPVCGLKHVLNEALLAYLAVLDKYTLRDLVKNKEDIMKLL 53 >gi|87302927|ref|ZP_01085731.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701] gi|87282423|gb|EAQ74382.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701] Length = 144 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + +T+YG+ L+ A + +IA I E +L ++L L ++G+V ++R Sbjct: 1 MSFSTKTEYGLVALIELAEVYSGGGVLQAGEIARRQGIPERYLEQMLTSLRRSGLVHSLR 60 Query: 59 GRRGGVRLCRPADQITILDVV 79 G RGG +L R + IT+ +V+ Sbjct: 61 GPRGGYQLARSPELITVAEVL 81 >gi|251788573|ref|YP_003003294.1| BadM/Rrf2 family transcriptional regulator [Dickeya zeae Ech1591] gi|247537194|gb|ACT05815.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591] Length = 148 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 9/124 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L A+ + P R +IA + S + + +L L KAG+ ++ G Sbjct: 1 MPMSTRFVVAVHILTGFAVSDGKPMRSEEIAYSVNTSAVVIRGLLARLGKAGLTKSQLGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + A I++LDV + E++ F+ H+ P +C + S + L+A Sbjct: 61 GGGTMLAKHAANISLLDVYETVEDTAL----FSLHR--TPPCENCAVGSNI---LDAIHP 111 Query: 121 VLTQ 124 +LT+ Sbjct: 112 ILTR 115 >gi|118464782|ref|YP_880680.1| StaS protein [Mycobacterium avium 104] gi|118166069|gb|ABK66966.1| StaS protein [Mycobacterium avium 104] Length = 159 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + +Y +R ++ A D + +A+A I FL IL L +V + RGR Sbjct: 1 MSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60 Query: 62 GGVRLCRPADQITILDVVK 80 GG L RP I+I DV++ Sbjct: 61 GGYELARPGKDISIADVLR 79 >gi|300697092|ref|YP_003747753.1| Rrf2 family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073816|emb|CBJ53337.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum CFBP2957] Length = 143 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GG L RPAD+IT+LDV + E +A Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIA 88 >gi|56696894|ref|YP_167256.1| iron-sulfur cluster assembly transcription factor IscR, putative [Ruegeria pomeroyi DSS-3] gi|56678631|gb|AAV95297.1| iron-sulfur cluster assembly transcription factor IscR, putative [Ruegeria pomeroyi DSS-3] Length = 152 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + I+E IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALTDIALQPADKLVTLGDISERQDISLPYLEQLFVKLRRADLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA I +++++ A +E+ A + LT+ L + L+A Sbjct: 61 PGGGYRLARPASDIRVVEILAAVDETVNAMHKGAGASGASSGSRAQSLTNRLWEGLSAHV 120 Query: 120 DV-LTQYSIECLVRN 133 V L Q + +V+N Sbjct: 121 YVFLHQTRLSDVVKN 135 >gi|83749686|ref|ZP_00946666.1| Rrf2 family protein [Ralstonia solanacearum UW551] gi|207739012|ref|YP_002257405.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum IPO1609] gi|83723648|gb|EAP70846.1| Rrf2 family protein [Ralstonia solanacearum UW551] gi|206592383|emb|CAQ59289.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum IPO1609] Length = 143 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GG L RPAD+IT+LDV + E +A Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIA 88 >gi|311107146|ref|YP_003979999.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8] gi|310761835|gb|ADP17284.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8] Length = 180 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C +T L Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117 Query: 115 LN-AFFDVLTQYSIECLV 131 LN D L S++ LV Sbjct: 118 LNRKMVDYLDSVSLQDLV 135 >gi|29654658|ref|NP_820350.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 493] gi|154705843|ref|YP_001424796.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111] gi|161829979|ref|YP_001597203.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331] gi|29541926|gb|AAO90864.1| rrf2 family protein [Coxiella burnetii RSA 493] gi|154355129|gb|ABS76591.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111] gi|161761846|gb|ABX77488.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331] Length = 153 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +++ DY V+ A +QIA +S + K+L+ L + +V + RG Sbjct: 2 LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L R I+I D++ A + + EC + C CG+ + FD Sbjct: 62 NGGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFD 120 Query: 121 VLTQYSI 127 VL ++ Sbjct: 121 VLDSLNL 127 >gi|56419543|ref|YP_146861.1| hypothetical protein GK1008 [Geobacillus kaustophilus HTA426] gi|56379385|dbj|BAD75293.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 136 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%) Query: 7 TDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +D+ I V + Y A + IA++ + L KIL L K I+ + G +GG Sbjct: 3 SDFSIAVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGF 62 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 L P + IT+ + K T E V +C S++ +CP+ Sbjct: 63 SLNDPPEHITLDKIFKITSEETLVPKCPDSNE-NCPI 98 >gi|269958756|ref|YP_003328543.1| putative cysteine desulfurase [Anaplasma centrale str. Israel] gi|269848585|gb|ACZ49229.1| putative cysteine desulfurase [Anaplasma centrale str. Israel] Length = 520 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R S IA+ +SE +L +++ L G+V++ RG GG L P + IT+ ++ + Sbjct: 29 PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + + C + P G +R + +D + +Y + L +SI +FN Sbjct: 89 DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIEKYVMHYL--KNTSILDVFN 138 >gi|295402097|ref|ZP_06812057.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312109802|ref|YP_003988118.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294975879|gb|EFG51497.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311214903|gb|ADP73507.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 136 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA++ + L KIL L K I+ + G +GG L P + IT+ + K T E V Sbjct: 28 IAQSVSVHPARLRKILSILRKENIITSKEGAKGGFTLNDPPEHITLDKIFKITSEETLVP 87 Query: 90 ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131 +C S++ +CP+ + L V A F + L +I+ ++ Sbjct: 88 KCPDSNE-NCPIGRNLSNILIRVCHNAEQHFLNYLKGVTIKDII 130 >gi|325519582|gb|EGC98940.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. TJI49] Length = 49 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 M LT TDY +RV++Y A+H + I +I++A IS+ L K++Q L Sbjct: 1 MRLTDYTDYSLRVMLYLAVHGEGLATIQEISDAYGISKNHLMKVVQRL 48 >gi|212212264|ref|YP_002303200.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212] gi|212010674|gb|ACJ18055.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212] Length = 153 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +++ DY V+ A +QIA +S + K+L+ L + +V + RG Sbjct: 2 LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L R I+I D++ A + + EC + C CG+ + FD Sbjct: 62 NGGYQLARAPQSISIADIIAAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFD 120 Query: 121 VLTQYSI 127 VL ++ Sbjct: 121 VLDSLNL 127 >gi|86609933|ref|YP_478695.1| transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558475|gb|ABD03432.1| transcriptional regulator, putative [Synechococcus sp. JA-2-3B'a(2-13)] Length = 151 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y I+ L+ A + + + IA+ I +L K+L L +AG+V + RG Sbjct: 1 MRLTTRATYSIKALLDLAMLGSGQMASVRAIAQRQGIPAPYLEKLLIELRQAGLVCSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110 +GG RL R +I I ++ A ES PLV S T+V Sbjct: 61 AQGGYRLARAPRRIPISAILAAVGESL------------DPLVESSDATAV 99 >gi|15615687|ref|NP_243991.1| hypothetical protein BH3125 [Bacillus halodurans C-125] gi|10175747|dbj|BAB06844.1| BH3125 [Bacillus halodurans C-125] Length = 142 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + +Y +R L+ A + + ++++ + +L K+L L + + RG+ Sbjct: 1 MKVSSKGEYCLRALIILAKQPERRFTVHELSKHTLVPPPYLEKLLSQLRVLSYITSKRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A I++ +V++ E C + + C L C L + + Sbjct: 61 GGGYQLSRDARDISMGEVIRQLEGPLAPMSCVSVTSYQSCELEQGCLLKPLWGLVRDTVA 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 +VL Q ++ L+ N+ +K+ Sbjct: 121 NVLDQTTLADLIENKLGQRKV 141 >gi|320450833|ref|YP_004202929.1| BadM/Rrf2 family transcriptional regulator [Thermus scotoductus SA-01] gi|320151002|gb|ADW22380.1| transcriptional regulator, BadM/Rrf2 family [Thermus scotoductus SA-01] Length = 139 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 ++IA F+ K+L L KAG+VE+ GR GGV L P + IT+L V+++ Sbjct: 28 AEIAAKLKAPPAFMAKVLSKLAKAGLVESRMGRAGGVWLKAPPEGITLLKVMES 81 >gi|293606133|ref|ZP_06688498.1| iron-sulfur cluster assembly transcription factor IscR [Achromobacter piechaudii ATCC 43553] gi|292815588|gb|EFF74704.1| iron-sulfur cluster assembly transcription factor IscR [Achromobacter piechaudii ATCC 43553] Length = 180 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-----VGSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C +T L Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117 Query: 115 LN-AFFDVLTQYSIECLV 131 LN D L S++ LV Sbjct: 118 LNRKMVDYLDSVSLQDLV 135 >gi|225386837|ref|ZP_03756601.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme DSM 15981] gi|225047063|gb|EEG57309.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme DSM 15981] Length = 142 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 ++AE C + + K++ L KAG V+T G GG + ADQ+T LD + E F Sbjct: 25 EELAENICTNPARVRKVMAKLKKAGFVKTKEGSEGGYLFDQDADQVT-LDQIAQALEIRF 83 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 V + S D + + G+ + ++ FD L + Sbjct: 84 VDTAWKSGDTDMKCLVASGMAGL----MDEIFDDLNE 116 >gi|260574649|ref|ZP_05842652.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] gi|259023066|gb|EEW26359.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] Length = 153 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ +D +++I+ IS +L ++ L +A +VE VRG Sbjct: 1 MKLSTKGRYAMVALADLALARDDDLVSLAEISRRQDISLAYLEQLFVKLRRASLVEAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL R D I + ++++A EE+ Sbjct: 61 PGGGYRLARSPDAIRVSEILEAVEET 86 >gi|209550687|ref|YP_002282604.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536443|gb|ACI56378.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 154 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +L S+E V Sbjct: 122 IAAILDNMSLEQFV 135 >gi|254460865|ref|ZP_05074281.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales bacterium HTCC2083] gi|206677454|gb|EDZ41941.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium HTCC2083] Length = 142 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A + + IAE + + + ++L L +AG++ +V+G Sbjct: 1 MKRNSRLSLALHTLSHMAGDPERKRTSADIAEHAGTNPVVVRRVLGKLREAGLLASVKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87 GG L +PA+ IT+ DV A +E Sbjct: 61 AGGWSLAKPANSITLADVYIALDERLV 87 >gi|242372556|ref|ZP_04818130.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349773|gb|EES41374.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 142 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L I + + IA + + + + +++ L +AG +ET +G Sbjct: 1 MKISSRFTVAVHILSLVHIERNQTLTSAYIAGSVNTNSVVIRRLISKLKQAGFLETHQGS 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGS---CGLTSVLRKA 114 GG++L +P IT+LDV +A E E F H+ I+C +VG+ L VL +A Sbjct: 61 -GGIQLLKPLTDITLLDVYRAV-EVVEEGELFQMHEDTNINC-VVGANIQSVLEIVLLRA 117 Query: 115 LNAFFDVLTQYSIECLV 131 +A VL +++ +V Sbjct: 118 QDAMETVLANVTMDDIV 134 >gi|256005574|ref|ZP_05430534.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|255990482|gb|EEU00604.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|316941505|gb|ADU75539.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 149 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A++++ + ++ IAE IS +L ++ L K+G+V++ +G Sbjct: 1 MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA----ECFASHKIDCPLVGSCGLTSVLRKAL 115 +GG L I + +++A E V E + ++ + + K+L Sbjct: 61 AQGGYMLSEDPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120 Query: 116 NAFFDVLTQYSIECLVRNRSSI 137 N D +T + R R+ I Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142 >gi|187478009|ref|YP_786033.1| DNA-binding protein [Bordetella avium 197N] gi|115422595|emb|CAJ49120.1| putative DNA-binding protein [Bordetella avium 197N] Length = 177 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C +T L Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117 Query: 115 LN-AFFDVLTQYSIECLV 131 LN D L S++ LV Sbjct: 118 LNRKMVDYLDSVSLQDLV 135 >gi|330830081|ref|YP_004393033.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas veronii B565] gi|328805217|gb|AEB50416.1| Iron-sulfur cluster assembly transcription factor IscR [Aeromonas veronii B565] Length = 154 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG GG RL + Sbjct: 1 MLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRGPGGGYRLGLAPGE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I++ V+ A +ES +C K C C S+ R L ++ LVR Sbjct: 61 ISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERISSFLGDITLAELVR 118 Query: 133 NRSSIKKI 140 ++ +++I Sbjct: 119 -QADVRRI 125 >gi|329904110|ref|ZP_08273676.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium IMCC9480] gi|327548132|gb|EGF32848.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium IMCC9480] Length = 147 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +S I++ IS +L ++ L + IVE+VRG GG L R A+ +T+ D++ A + Sbjct: 15 PVTLSGISQRQEISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAEDVTVADIIIAVD 74 Query: 84 ESFFVAEC 91 E +C Sbjct: 75 EPLDSTQC 82 >gi|255004297|ref|ZP_05279098.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Virginia] Length = 506 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R S IA+ +SE +L +++ L G+V++ RG GG L P + IT+ ++ + Sbjct: 16 PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 75 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + + C + P G +R + +D + +Y + L +SI +FN Sbjct: 76 DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIERYVMHYL--KNTSILDVFN 125 >gi|260881170|ref|ZP_05403779.2| Rrf2 family protein [Mitsuokella multacida DSM 20544] gi|260849700|gb|EEX69707.1| Rrf2 family protein [Mitsuokella multacida DSM 20544] Length = 159 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +A + ++ + + K + L KAG+++ RG GG+++ RP D+IT+ DV +A E Sbjct: 38 LAGSVNVNPVIIRKTMSQLQKAGLIKVARGT-GGIKITRPLDEITLFDVFQAVE 90 >gi|254489600|ref|ZP_05102802.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214041770|gb|EEB82411.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 149 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 D P ++A++ + + + L AG V++ RG GG L RP +IT+LD+ A Sbjct: 21 DEPVTSDRLAKSMGTNPAVFRRTMAGLRNAGYVQSGRGHGGGWSLVRPLSEITLLDIYTA 80 Query: 82 TEESFFVAECFASHKIDC 99 + A S+ DC Sbjct: 81 LGQPALFAIGMRSNNTDC 98 >gi|119945067|ref|YP_942747.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas ingrahamii 37] gi|119863671|gb|ABM03148.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas ingrahamii 37] Length = 158 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI + P ++ I+ IS +L ++ L K +V +VRG Sbjct: 1 MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKAL 115 GG +L + QI++ ++ A ES V +C K C G + L + L + Sbjct: 61 PGGGYKLGKERHQISVAMIIDAVNESVDVRKCGG--KGGCAEDGVQCLTHSLWAQLSDRI 118 Query: 116 NAFFDVLT 123 + F D +T Sbjct: 119 STFLDNIT 126 >gi|33592860|ref|NP_880504.1| putative DNA-binding protein [Bordetella pertussis Tohama I] gi|33596642|ref|NP_884285.1| putative DNA-binding protein [Bordetella parapertussis 12822] gi|33601258|ref|NP_888818.1| putative DNA-binding protein [Bordetella bronchiseptica RB50] gi|33572508|emb|CAE42084.1| putative DNA-binding protein [Bordetella pertussis Tohama I] gi|33573343|emb|CAE37327.1| putative DNA-binding protein [Bordetella parapertussis] gi|33575693|emb|CAE32771.1| putative DNA-binding protein [Bordetella bronchiseptica RB50] gi|332382273|gb|AEE67120.1| putative DNA-binding protein [Bordetella pertussis CS] Length = 170 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C +T L Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWTT 117 Query: 115 LN-AFFDVLTQYSIECLV 131 LN D L S++ LV Sbjct: 118 LNRKMVDYLDSVSLQDLV 135 >gi|317405206|gb|EFV85545.1| DNA-binding protein [Achromobacter xylosoxidans C54] Length = 180 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C +T L Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117 Query: 115 LN-AFFDVLTQYSIECLV 131 LN D L S++ LV Sbjct: 118 LNRKMVDYLDSVSLQDLV 135 >gi|302532311|ref|ZP_07284653.1| rrf2 family protein [Streptomyces sp. C] gi|302441206|gb|EFL13022.1| rrf2 family protein [Streptomyces sp. C] Length = 144 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + + L L AG+VE+ RG+ G RL R + IT+ DV A E + Sbjct: 33 QIAASVNTNPVVIRRTLGSLRDAGLVESRRGQGAGWRLARTPESITLRDVHLAVEPEPLI 92 Query: 89 AECFASHKIDCPLVGSCGLTSVLRK 113 + CP+ + G+ +VLR+ Sbjct: 93 PLHSSPPNRKCPV--AQGIPAVLRE 115 >gi|172062519|ref|YP_001810170.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171995036|gb|ACB65954.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MC40-6] Length = 146 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA C + + + ++L L +G V++ +G G Sbjct: 2 RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G L D IT+LDV +A E ++ + +C Sbjct: 62 GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPEC 98 >gi|149914909|ref|ZP_01903438.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. AzwK-3b] gi|149811097|gb|EDM70934.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. AzwK-3b] Length = 153 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ A+ + + +S+I+ +S +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALVDIALQDGESLVTLSEISRRQDVSLPYLEQLFVKLRRANLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL R A +I ++DV+ A +E+ Sbjct: 61 PGGGYRLARSASEIRVVDVLAAVDET 86 >gi|323141801|ref|ZP_08076668.1| putative HTH-type transcriptional regulator CymR [Phascolarctobacterium sp. YIT 12067] gi|322413724|gb|EFY04576.1| putative HTH-type transcriptional regulator CymR [Phascolarctobacterium sp. YIT 12067] Length = 145 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H D + IA IS+ +L +I+ L K+ ++ RG Sbjct: 1 MKISTKGRYALRMMLDLAEHQQDGFVALKDIAARQNISKKYLEQIVPILNKSNFLQANRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + T+ +++ TE + C + + C C +T L + LN Sbjct: 61 FQGGYRLVNAPREYTVGSILRLTEGNLTPVACLDFNPVGCERRNEC-ITLPLWQGLNKVI 119 Query: 120 -DVLTQYSIECLVRN 133 D L +++ ++ N Sbjct: 120 ADYLDNITLQDILDN 134 >gi|117926693|ref|YP_867310.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1] gi|117610449|gb|ABK45904.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp. MC-1] Length = 153 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + +K+ Y I ++ A ++ P +I ++ + + +L +++Q LVKAGI++ +RG Sbjct: 2 LKFSKKLLYAIEAVVDIAYNSGGEPVQIREVTSRQGVPQRYLEQVMQRLVKAGILKGIRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 +GG L + +I++ D+ + E Sbjct: 62 PKGGYLLAKERSKISVGDIARVAME 86 >gi|291562421|emb|CBL41237.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SS3/4] Length = 147 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 50/113 (44%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + IA +S+ +L +I+ L K G++ T RG +GG +L + + T+ +++ TE S Sbjct: 16 LKDIAARQGLSKKYLEQIVPLLNKTGMLSTTRGYQGGYKLAKSPSECTVGAILQTTEGSL 75 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 C C +C V D L +I+ ++ + +++ Sbjct: 76 APVSCLEHTPNPCERCSACDTLPVWEGLNRVIMDYLDGITIQTILDQKHELEE 128 >gi|222475186|ref|YP_002563602.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Florida] gi|222419323|gb|ACM49346.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Florida] Length = 520 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R S IA+ +SE +L +++ L G+V++ RG GG L P + IT+ ++ + Sbjct: 29 PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + + C + P G +R + +D + +Y + L +SI +FN Sbjct: 89 DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIERYVMHYL--KNTSILDVFN 138 >gi|254995024|ref|ZP_05277214.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Mississippi] Length = 520 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R S IA+ +SE +L +++ L G+V++ RG GG L P + IT+ ++ + Sbjct: 29 PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + + C + P G +R + +D + +Y + L +SI +FN Sbjct: 89 DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIERYVMHYL--KNTSILDVFN 138 >gi|298246146|ref|ZP_06969952.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297553627|gb|EFH87492.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 174 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 8/131 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAG--IVETV 57 + ++ + +YG+R+++ A H P ++ I++A + +L ++++ L A +V + Sbjct: 2 LRVSTKGEYGVRIMVDLARHYGGRPRSLTDISQAETLPLAYLEQLVKLLRDADPPLVSST 61 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCG---LTSVLR 112 RG GG RL R ++I++ ++V+ E C ++ C + SC L + +R Sbjct: 62 RGAHGGYRLNRDPNEISMGEIVRVLEGPISPMICATEGEMSQICGFIDSCKTKYLWARVR 121 Query: 113 KALNAFFDVLT 123 A+ D +T Sbjct: 122 DAVAQTLDSIT 132 >gi|99081081|ref|YP_613235.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040] gi|99037361|gb|ABF63973.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040] Length = 152 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ + Y + L A+ P+ ++ I++ IS +L ++ L + G+V + Sbjct: 1 MKLSTKGRYAMVALADIALQ---PSEGLVVLADISKRQQISLPYLEQLFVKLRRGGLVAS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEES 85 VRG GG RL RPA +I +++++ A +E+ Sbjct: 58 VRGPGGGYRLARPASEIRVVEILAAVDET 86 >gi|152971498|ref|YP_001336607.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|169303064|ref|YP_001693239.1| transcriptional regulator [Escherichia coli] gi|262043875|ref|ZP_06016963.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330013154|ref|ZP_08307575.1| transcriptional regulator [Klebsiella sp. MS 92-3] gi|150956347|gb|ABR78377.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|167614014|gb|ABZ89637.1| transcriptional regulator [Escherichia coli] gi|259038729|gb|EEW39912.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533580|gb|EGF60298.1| transcriptional regulator [Klebsiella sp. MS 92-3] Length = 159 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 F+ K++ PL + GI+ + GR G + L RPAD+IT+ D+ + E + +AS + D Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDIYLSVIED---KKLWAS-RPDV 96 Query: 100 PL-----VGSCG-LTSVLRKALNAFFDVLTQYSI 127 P +C SV +A A +VL ++++ Sbjct: 97 PARCVVSANACWYFKSVADEAEQASLNVLARHTV 130 >gi|239947324|ref|ZP_04699077.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia endosymbiont of Ixodes scapularis] gi|239921600|gb|EER21624.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia endosymbiont of Ixodes scapularis] Length = 107 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 19 IHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 + N NR +++I+ IS +L +I L KA +V+ +RG +GG L ++I I Sbjct: 4 LQNQVLNRSLCLNKISVKQNISLNYLEQIFSKLKKADLVKAIRGLKGGYILIGNLEEIKI 63 Query: 76 LDVVKATEESFFVAECF 92 D++ A E+F + C+ Sbjct: 64 SDIMDAVNENFIMTTCY 80 >gi|187777108|ref|ZP_02993581.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC 15579] gi|187774036|gb|EDU37838.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC 15579] Length = 125 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + + + + +++ L +AG+V + G GG L + DQIT+LDV +A + Sbjct: 12 IAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT-GGAYLLKDLDQITLLDVYRAV-DVVKEG 69 Query: 90 ECFASH---KIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN-RSSIKK 139 E F H I+CP+ + + VL A A VL ++E +V R IKK Sbjct: 70 ELFQFHDSPNINCPIGANIQSVMEGVLLNAQEAMEQVLENVTMEYIVTGIRKKIKK 125 >gi|323489199|ref|ZP_08094431.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus donghaensis MPA1U2] gi|323397086|gb|EGA89900.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus donghaensis MPA1U2] Length = 160 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87 I++ S + K+L+ LV AG++ +V G +GG +L + + I + D+ A E +S + Sbjct: 31 ISQQLGTSPTYFQKLLRKLVSAGLITSVPGVKGGFKLNKKPEDINVFDIYVAIEGQQSLY 90 Query: 88 VAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 S ++ C LT ++ +A +A+ + Q +IE L R Sbjct: 91 SPSGVLSDLLELEEPERCCLLTELMVEAESAWRSRMEQETIESLSRK 137 >gi|56416821|ref|YP_153895.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries] gi|56388053|gb|AAV86640.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries] Length = 520 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R S IA+ +SE +L +++ L G+V++ RG GG L P + IT+ ++ + Sbjct: 29 PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + + C + P G +R + +D + +Y + L +SI +FN Sbjct: 89 DKVRMVRCGNEREGCLPFPG-------VRCNSHNLWDGIEKYVMHYL--KNTSILDVFN 138 >gi|317484710|ref|ZP_07943611.1| transcriptional regulator [Bilophila wadsworthia 3_1_6] gi|316924066|gb|EFV45251.1| transcriptional regulator [Bilophila wadsworthia 3_1_6] Length = 168 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M + RT YG+R L+ A P ++++IA +S +L +I++ L AGI+ + Sbjct: 1 MRYSTRTRYGLRFLINLA---GRPAGACVQLAEIAREEGVSVKYLEQIVRVLRPAGILRS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 RG +GG L + D I + +V + E EC K C G C Sbjct: 58 ARGAKGGYALAKSPDAIRMDEVFERLEGHISPVECLHGAK-SCEREGVC 105 >gi|227823095|ref|YP_002827067.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234] gi|227342096|gb|ACP26314.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234] Length = 151 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + +++IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLASLGPGETAFVTEIATRNNIPKKFLDTILLELRNTGILRSKKGPN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L +PA +I I V++A + C Sbjct: 62 GGYSLSKPASEIMIGQVIRALDGPLAPIRC 91 >gi|238896072|ref|YP_002920808.1| putative transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238548390|dbj|BAH64741.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 173 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 F+ K++ PL + GI+ + GR G + L RPAD+IT+ D+ + E + +AS + D Sbjct: 55 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDIYLSVIED---KKLWAS-RPDV 110 Query: 100 PL-----VGSCG-LTSVLRKALNAFFDVLTQYSI 127 P +C SV +A A +VL ++++ Sbjct: 111 PARCVVSANACWYFKSVADEAEQASLNVLARHTV 144 >gi|220904116|ref|YP_002479428.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868415|gb|ACL48750.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 181 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P S++A ISE F+ KI++ L GI+++VRG GG L R + IT+ D++ A E Sbjct: 25 PASASELAACTGISEKFVQKIMRLLQAEGIIKSVRGIAGGHMLARNPEAITLADIICAVE 84 >gi|294054230|ref|YP_003547888.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] gi|293613563|gb|ADE53718.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] Length = 137 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + +Y RVL + D I +A+A I +L +IL L AG++ + R Sbjct: 1 MKLSHKLEYACRVLAQLGRSYGQDKLAHIDTLADAEKIPANYLVQILNELRTAGLITSKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 G++GG L R +I + +V+A + AE H Sbjct: 61 GKQGGYALSREPSKIQLSAIVQAVD-----AELLEQH 92 >gi|82701827|ref|YP_411393.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409892|gb|ABB74001.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira multiformis ATCC 25196] Length = 172 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ A+ P +++I++ IS +L ++ L G+V++VRG Sbjct: 1 MRLTTKGRFAVTALLDLALQRQTRPVTLAEISQRQQISLSYLEQLFAKLRSRGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF- 118 GG L + Q+++ +++ A +E +C + K +C C +T L LN Sbjct: 61 PGGGYCLAKDMGQVSVAEIILAVDEPIDSTQC--NGKENCHNDRKC-MTHDLWTKLNELI 117 Query: 119 FDVLTQYSIECLV 131 FD L +++ LV Sbjct: 118 FDHLGAVTLKQLV 130 >gi|28377816|ref|NP_784708.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254556000|ref|YP_003062417.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300767801|ref|ZP_07077711.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179992|ref|YP_003924120.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270649|emb|CAD63555.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254044927|gb|ACT61720.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300494786|gb|EFK29944.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045483|gb|ADN98026.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 174 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K + VL+ A + P + E S ++ KI++ LV AG+V + G Sbjct: 1 MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG---LTSVLRK 113 GGV L R + I+I DVV A E ++F F D V G + + + Sbjct: 61 NNGGVHLARSPEDISITDVVAAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSR 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 A + D L Q + L++ Sbjct: 121 ADQLWLDFLDQQKLATLIK 139 >gi|254249066|ref|ZP_04942386.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184] gi|124875567|gb|EAY65557.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184] Length = 146 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA C + + + ++L L G V++ +G G Sbjct: 2 RTDSRLSRMLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 G L D IT+LDV +A E ++ + +C + + L++ L++A + Sbjct: 62 GWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLA 121 Query: 121 VLTQYSIECLVRN 133 + ++ L R+ Sbjct: 122 RFGEVTLGMLSRD 134 >gi|296117471|ref|ZP_06836058.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295975992|gb|EFG82783.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 140 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%) Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 I +++ A H +S IA+ ++ + +LQ L ++G++E++RG RGG RL R Sbjct: 4 ILIMLDVAFHAGRNGTVSAADIADRANLARRGIEPLLQTLSRSGLLESIRGPRGGYRLGR 63 Query: 69 PADQI---TILDVVKATEES 85 P I IL+VV A E + Sbjct: 64 PRRDILLSDILEVVTADEST 83 >gi|256839901|ref|ZP_05545410.1| predicted protein [Parabacteroides sp. D13] gi|256738831|gb|EEU52156.1| predicted protein [Parabacteroides sp. D13] Length = 152 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 9/133 (6%) Query: 3 LTKRTDYGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VR 58 L+ T YG+ R L++ HN+ +IAE I+ L L+ LV AGI+ + Sbjct: 2 LSNPTRYGLIACRYLVW-GWHNNVWLNAPEIAERYRINVRALSPALRRLVMAGILRSQCG 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKAL 115 G R G L R +++T+L+VV+A E +F + C + C SC + V R L Sbjct: 61 GTRPGFMLSRAPEEVTMLEVVRALEGNFRMDCCRTVLPCVQCSCE-TDSCRVCGVFRDML 119 Query: 116 NAFFDVLTQYSIE 128 + L+ S+E Sbjct: 120 DELRSRLSSVSLE 132 >gi|163752875|ref|ZP_02159999.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia algicida OT-1] gi|161326607|gb|EDP97932.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia algicida OT-1] Length = 137 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A D P IS+IA IS+ FL IL L G++ + +G+ Sbjct: 2 LSKKTKYGLKALTYIARKGDEAPVLISEIATEEKISKKFLEAILLQLKNNGLLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + D+I I +++ E + C F DCP CGL ++ + + Sbjct: 62 GGYYLIKTPDEIKIASLIRILEGPIAMLPCVSLNFYEKCDDCPDETKCGLHQLMLEVRDN 121 Query: 118 FFDVLTQYSIECLV 131 VL ++E L Sbjct: 122 MLAVLDNKTLEDLT 135 >gi|116691671|ref|YP_837204.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649671|gb|ABK10311.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia HI2424] Length = 159 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA C + + + ++L L G V++ +G G Sbjct: 15 RTDSRLSRMLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGG 74 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 G L D IT+LDV +A E ++ + +C + + L++ L++A + Sbjct: 75 GWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLA 134 Query: 121 VLTQYSIECLVRN 133 + ++ L R+ Sbjct: 135 RFGEVTLGMLSRD 147 >gi|288933998|ref|YP_003438057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Klebsiella variicola At-22] gi|290510944|ref|ZP_06550313.1| transcriptional regulator [Klebsiella sp. 1_1_55] gi|288888727|gb|ADC57045.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola At-22] gi|289775937|gb|EFD83936.1| transcriptional regulator [Klebsiella sp. 1_1_55] Length = 159 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 27/39 (69%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPAD+IT+ D+ Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDI 79 >gi|226941780|ref|YP_002796854.1| transcriptional regulator [Laribacter hongkongensis HLHK9] gi|226716707|gb|ACO75845.1| Predicted transcriptional regulator [Laribacter hongkongensis HLHK9] Length = 159 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L +A +VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLALRQHKGPVTLAGISERQDISLSYLEQLFGKLRRAELVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R IT+ D++ A +E +C Sbjct: 61 PGGGYCLARQPAAITVADIIIAVDEPLDATQC 92 >gi|254509696|ref|ZP_05121763.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] gi|221533407|gb|EEE36395.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] Length = 152 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 12/140 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + D + +I+E IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQSSDALVTLGEISERQDISLPYLEQLFVKLRRADLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-----LTSVLRKA 114 GG RL R +I +++++ A +E+ A HK S G LT+ L ++ Sbjct: 61 PGGGYRLARAPSEIRVVEILAAVDET-----VDAMHKGAGATGASSGSRAQSLTNRLWES 115 Query: 115 LNA-FFDVLTQYSIECLVRN 133 L+A + L Q + ++RN Sbjct: 116 LSANVYVFLHQTRLSDVIRN 135 >gi|83645081|ref|YP_433516.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83633124|gb|ABC29091.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 135 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH +D P QIAE + + + + + L G V++ +G G Sbjct: 2 RKDSRLSRVLHVLIHLAASDKPMTSGQIAEMLSTNPVVVRRTMGMLRVQGYVDSAKGHSG 61 Query: 63 GVRLCRPADQITILDVVKA 81 G L +P ++IT+LDV A Sbjct: 62 GWTLIKPLNEITLLDVHNA 80 >gi|241767055|ref|ZP_04764836.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] gi|241362402|gb|EER58363.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] Length = 142 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T R + + A+ + P +S I+ S L ++ L KAG+V++ RG Sbjct: 1 MRITTRGQLAVSAMTDLAMRQHKGPVALSTISARQGTSLSHLEQLFSALKKAGLVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L R +Q+++ D+V A E E Sbjct: 61 PGGGYALARKPEQVSVADIVVAVENQRVAEEA 92 >gi|206577940|ref|YP_002237025.1| putative transcriptional regulator [Klebsiella pneumoniae 342] gi|206566998|gb|ACI08774.1| putative transcriptional regulator [Klebsiella pneumoniae 342] Length = 159 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 27/39 (69%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPAD+IT+ D+ Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDI 79 >gi|188533841|ref|YP_001907638.1| Transcription regulator [Erwinia tasmaniensis Et1/99] gi|188028883|emb|CAO96745.1| Transcription regulator [Erwinia tasmaniensis Et1/99] Length = 144 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G +RL RPA QIT+ D+ Sbjct: 32 FVRKMMVPLTRDGIIVSTLGRSGSIRLGRPAQQITLCDI 70 >gi|88799892|ref|ZP_01115464.1| predicted transcriptional regulator [Reinekea sp. MED297] gi|88777323|gb|EAR08526.1| predicted transcriptional regulator [Reinekea sp. MED297] Length = 150 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I+ IS +L ++ L K G+V +VRG GG RL I++ VV A Sbjct: 12 PINLADISHRQGISLSYLEQLFSKLRKQGLVSSVRGPGGGYRLGDERSAISVAAVVDAVS 71 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AFFDVLTQYSIECLVRNRSSIKKIFN 142 ES +C K C G LT L + L+ D L S++ LV +RS I+ + + Sbjct: 72 ESMDATKCQG--KSGCQ-GGEICLTHHLWQDLSEQIHDFLEDISLQDLV-DRSEIRSVND 127 >gi|184199973|ref|YP_001854180.1| Rrf2 family DNA-binding protein [Kocuria rhizophila DC2201] gi|183580203|dbj|BAG28674.1| putative Rrf2 family DNA-binding protein [Kocuria rhizophila DC2201] Length = 176 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M LT +D +RVL+ + P +IAE + K + L G++ + Sbjct: 1 MRLTAFSDIALRVLL---LMGGLPQGTMLSTQRIAEGVGAPYHHVAKTVARLRGMGLLCS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RGR GGV L +++ V++ E + EC A CPL C L L A Sbjct: 58 QRGRAGGVALTAEGCGVSVGRVLRELEADTAIVECEADEAA-CPLNHGCRLRRALNSARE 116 Query: 117 AFFDVLTQYSIECLVRNR 134 AF+ L ++ LV R Sbjct: 117 AFYRELDGVTVTDLVNPR 134 >gi|182679823|ref|YP_001833969.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635706|gb|ACB96480.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 149 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R + + A+H P +A + L +LQ LV+A I++ VRG R Sbjct: 4 LSRRNLLALAAVTDIALHARPLPVAAKALASRLQLPPRHLETLLQALVRANILKGVRGPR 63 Query: 62 GGVRLCRPADQITILDVVKA-----TEESFFVAECFASHKIDCPLVGSCG 106 GG L R +IT D+++A E+ + C + PLV G Sbjct: 64 GGYELARERRRITAADILRAILNEQDSENGLIQPCGLVEHVVGPLVEEAG 113 >gi|260063768|ref|YP_003196848.1| BadM/Rrf2 family transcriptional regulator [Robiginitalea biformata HTCC2501] gi|88783213|gb|EAR14386.1| transcriptional regulator, BadM/Rrf2 family protein [Robiginitalea biformata HTCC2501] Length = 135 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A D P +I++IA IS+ FL IL L K G + + +G+ Sbjct: 2 LSKKTKYGLKALTYLAAQKDREPVQIAEIARHENISQKFLESILLTLRKNGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVL 111 GG L + +I + V++ E + C F DCP +C + ++ Sbjct: 62 GGYYLIKDPGEIRMTSVMRVLEGPIAMVPCVSLNFYEPCDDCPDESACSVHKLM 115 >gi|300716621|ref|YP_003741424.1| transcription regulator, Rrf2 family [Erwinia billingiae Eb661] gi|299062457|emb|CAX59574.1| Transcription regulator, Rrf2 family [Erwinia billingiae Eb661] Length = 160 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G +RL RPAD+IT+ D+ Sbjct: 41 FVRKMMVPLTRDGIIVSTLGRAGTIRLGRPADEITLCDI 79 >gi|126737794|ref|ZP_01753524.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. SK209-2-6] gi|126721187|gb|EBA17891.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. SK209-2-6] Length = 153 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 37/59 (62%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + I++ IS +L ++ L +A +V +VRG GG RL RPA +I ++D++ A +E+ Sbjct: 28 LGDISKRQDISLPYLEQLFVKLRRAELVTSVRGPGGGYRLARPASEIRVVDILSAVDET 86 >gi|221369698|ref|YP_002520794.1| hypothetical protein RSKD131_3861 [Rhodobacter sphaeroides KD131] gi|221162750|gb|ACM03721.1| Hypothetical Protein RSKD131_3861 [Rhodobacter sphaeroides KD131] Length = 142 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + L++ +H D P QIA + + + +I+ L G V+ RG G Sbjct: 2 RQDTRLSRLLHVLLHMAQTDAPMTSQQIAGMLGSNPVVVRRIMAGLRDGGYVDAERGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G R+ R +IT+LDV ++ A F++ + C Sbjct: 62 GWRIIRRTTEITVLDVYRSLGSPDLFAFGFSNPRPSC 98 >gi|117164516|emb|CAJ88062.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 150 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 17/110 (15%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L KAG+VE+ RG G L R + +T+LDV +A E Sbjct: 32 QIATSANTNPVVIRRLLGELRKAGLVESRRGVGAGWSLARELESMTLLDVYEAVEPGPLF 91 Query: 89 A--------ECFASHKIDCPLVGSC--GLTSVLRKAL------NAFFDVL 122 A EC H I P + + G+ LR L N DVL Sbjct: 92 AMHRTTPDQECVVGHGIQ-PAMQNIYEGIEKTLRDELARVTLANVLRDVL 140 >gi|257457624|ref|ZP_05622791.1| Rrf2 family protein [Treponema vincentii ATCC 35580] gi|257445010|gb|EEV20086.1| Rrf2 family protein [Treponema vincentii ATCC 35580] Length = 141 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IAE+ ++ + + KIL L KAG+VET G GG L + ++I +L + KA E Sbjct: 31 IAESTGVNAVIIRKILLQLQKAGLVETAAG-VGGSHLVKKPEEINLLSIYKAVNEDNVHR 89 Query: 90 ECFASH---KIDCPL 101 F+ H CPL Sbjct: 90 TVFSFHPSPNSQCPL 104 >gi|218674482|ref|ZP_03524151.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 156 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +A +VET G GG RL R + Sbjct: 8 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYRLARAPSE 67 Query: 73 ITILDVVKATEESFFVAECFASHKID-CPLVG-----SCGLTSVLRKALNAFFDVLTQYS 126 + L++V+A E C + + C G C + ++ +A A+ D L + Sbjct: 68 VNFLEIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWRDTLRRVR 127 Query: 127 IECLV 131 + LV Sbjct: 128 LSDLV 132 >gi|239636705|ref|ZP_04677707.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri L37603] gi|239598060|gb|EEQ80555.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri L37603] Length = 158 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++K + GI VL+ A + SQ ++E +S+ L KIL+ LV A ++ + Sbjct: 1 MKISKHFEQGIYVLLILATQENQGAVKSQTLSEKLEVSDSSLKKILRKLVVANLITSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKA 81 + GG +L + + IT+ DV++A Sbjct: 61 KDGGFQLNQSIEDITLKDVIEA 82 >gi|317132533|ref|YP_004091847.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] gi|315470512|gb|ADU27116.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] Length = 137 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISE------LFLFKILQPLVKAGIV 54 M +T+ +DY +RV+++ Y I + EA ISE FL K+L+ + A IV Sbjct: 1 MRVTQESDYALRVIIFL-----YQRGIGERVEARVISEKENIPLRFLLKLLRKMAAANIV 55 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRK 113 + RG GG + + +I++ +V++A E +V +C S + + +C + L+ Sbjct: 56 RSYRGSGGGYAIEKQPSEISVREVIEAVEGPIYVNKCLGDSSQCNLDRTSTCHIHRALQM 115 Query: 114 ALNAFFDVLTQYSIECLVR 132 + L + + E +++ Sbjct: 116 VQDKLLANLDELTFEQILK 134 >gi|259416991|ref|ZP_05740911.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp. TrichCH4B] gi|259348430|gb|EEW60207.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp. TrichCH4B] Length = 142 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 38/59 (64%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++ I++ IS +L ++ L + G+V +VRG GG RL RPA +I +++++ A +E+ Sbjct: 18 LADISKRQDISLPYLEQLFVKLRRGGLVASVRGPGGGYRLARPASEIRVVEILAAVDET 76 >gi|254476371|ref|ZP_05089757.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] gi|214030614|gb|EEB71449.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] Length = 134 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D S IA+ + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGRLREAGLLTSEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R I+ DV A +E ++ + + P +C + L+K ++ + Sbjct: 61 AGGWRLARSPQDISFADVYLALDERLVASDEIS----EAP---ACSVEHALQKRVSGVLE 113 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 + Q I+ L +SI ++ A Sbjct: 114 EIEQTLIQKL--GEASISEVRGA 134 >gi|114798072|ref|YP_758963.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444] gi|114738246|gb|ABI76371.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444] Length = 163 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL---DVVKATEESF 86 + +L K +Q L +AGIV + RG GG RL R ++I +L D V E +F Sbjct: 37 VPPAYLAKHMQALARAGIVTSARGASGGYRLARAPEEINLLQIADAVDGGEPAF 90 >gi|319946559|ref|ZP_08020794.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747305|gb|EFV99563.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 149 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ D S IA + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLVMIALKGDCTKVTSDMIAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GG + + + I++LD+ +A E + F H+ P Sbjct: 61 -TGGAEMAKELEDISLLDIYQAVECLGKTGQLFGFHEHPNP 100 >gi|300113345|ref|YP_003759920.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539282|gb|ADJ27599.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 158 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/132 (19%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + ++K TDY I ++ A+ + + ++ + + KIL+ L +AG++ + RG Sbjct: 2 LRMSKMTDYAIVLMTRLAMDPKGQHAATDLSAQVEMPLPTVSKILKQLARAGLLVSSRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L + + I++ +++ E + EC ++ +C C + + A + Sbjct: 62 QGGYSLGKSPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCATRAHWEQINQAVYG 120 Query: 121 VLTQYSIECLVR 132 L + + +V+ Sbjct: 121 ALNEIKLSDMVQ 132 >gi|259503283|ref|ZP_05746185.1| Rrf2 family protein [Lactobacillus antri DSM 16041] gi|259168738|gb|EEW53233.1| Rrf2 family protein [Lactobacillus antri DSM 16041] Length = 154 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I H P IA + S + + +++ L K G++ETV G Sbjct: 1 MRVSTRLSDSIHILAFLQIFHGKLPLTSENIAGSVRTSPVVIRRLMSALRKGGLIETVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 RL RPA +I++ D+ A E S Sbjct: 61 -SADPRLARPASEISLYDIYLAVEGS 85 >gi|254455677|ref|ZP_05069106.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211] gi|207082679|gb|EDZ60105.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211] Length = 130 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 7/113 (6%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + I+ IS +L +I L K IV+++RG +GG L + ++I + ++ A + Sbjct: 14 PVSLRDISLRQGISLDYLEQIFSKLKKDQIVKSIRGTQGGYVLSKKPNEIKLTNIFHAVD 73 Query: 84 ESFFVAECFASHKIDCPLVG----SCGLTSVLRKALNAFFDVLTQYSIECLVR 132 E +C K C + L L +N+FFD + S+E L++ Sbjct: 74 EKVKTVQCKKESKKGCNGKATKCVTHNLWDELENHINSFFD---KKSLEDLLK 123 >gi|332528839|ref|ZP_08404813.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041698|gb|EGI78050.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 190 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ + + ++ A+ P ++ I + IS +L ++ L +A +VE+ RG Sbjct: 1 MRLSAKSRFAVAAMIDLALREAAGPVPLNSIGQRLQISLSYLEQLFSKLRRANLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L R A ++++ D+++A E Sbjct: 61 PGGGYTLGRSAQRVSVADIIRAVE 84 >gi|163857298|ref|YP_001631596.1| hypothetical protein Bpet2986 [Bordetella petrii DSM 12804] gi|163261026|emb|CAP43328.1| unnamed protein product [Bordetella petrii] Length = 148 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ +H D P +IA + + + + L K G V++ +G G Sbjct: 2 RTDSRLSRMLHVLLHMARADQPMTSEEIARMLGTNAAVVRRTMAGLRKVGYVQSDKGHHG 61 Query: 63 GVRLCRPADQITILDVVKA 81 G R+ R D IT+LDV +A Sbjct: 62 GWRMARGLDSITLLDVHRA 80 >gi|89054857|ref|YP_510308.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1] gi|88864406|gb|ABD55283.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1] Length = 152 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A+ D +S +++ +S +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVAMADLALQTGDVLTPLSDLSKRQNVSLPYLEQLFVKLRRAELVVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL RPA +I ++++ +A +E+ Sbjct: 61 PGGGYRLARPATEIRVVEIFEAVDET 86 >gi|317969579|ref|ZP_07970969.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp. CB0205] Length = 142 Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T YG+ L+ A R +S IA+ I E +L +++ L K G++ + R Sbjct: 1 MPFNAKTRYGLLALIELAGIQAQGGRLQVSVIAQRQGIPERYLEQMMTSLRKGGLLNSSR 60 Query: 59 GRRGGVRLCRPADQITILDVVK 80 G +GG +L RPA I + + ++ Sbjct: 61 GPKGGYQLARPAADIRLSEALE 82 >gi|189183482|ref|YP_001937267.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda] gi|189180253|dbj|BAG40033.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda] Length = 148 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y + VL + + P ++ +IA+ I+ +L ++ L GIV++V+G Sbjct: 1 MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GG L + TI D++ A EE + C S Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRCNNS 95 >gi|149202631|ref|ZP_01879603.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. TM1035] gi|149143913|gb|EDM31947.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. TM1035] Length = 153 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + I+ IS +L ++ L +A +V++VRG GG RL RPA +I + D++ A +E+ Sbjct: 28 LGDISRRQDISLPYLEQLFVKLRRADLVKSVRGPGGGYRLMRPASEIRVTDILAAVDETI 87 >gi|154503942|ref|ZP_02041002.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149] gi|153795369|gb|EDN77789.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149] Length = 132 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK DY IR++ A+ + +S+I E + +KI + L K+G +++ RG Sbjct: 1 MLFTKECDYAIRIMR--ALSSGELISVSRICEMEHLPSAMTYKITRKLEKSGFLKSCRGT 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L +I++ D+ A + + EC Sbjct: 59 NGGYALNLKLAEISLYDLCAAIDPDILLLECM 90 >gi|222086332|ref|YP_002544865.1| hypothetical protein Arad_2848 [Agrobacterium radiobacter K84] gi|221723780|gb|ACM26936.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 156 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L AG++ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIASRNNIPKKFLDTILLELRNAGVLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L R A +I I V++ + C + DC C + + + +A Sbjct: 62 GGYSLSRLASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPERCHVRRSMTEVRDA 121 Query: 118 FFDVLTQYSIECLV 131 D+L ++E V Sbjct: 122 IADILDNMTLEQFV 135 >gi|312129033|ref|YP_003996373.1| transcriptional regulator, badm/rrf2 family [Leadbetterella byssophila DSM 17132] gi|311905579|gb|ADQ16020.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella byssophila DSM 17132] Length = 139 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 6/137 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K+ Y ++ L ++ + P IS+I+E I + FL IL L GI+++ +G+ Sbjct: 2 ISKKAKYALKALTRLTLNYETRKPLLISEISETENIPKKFLEAILLELRNNGILQSQKGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116 GG L P ++ I +++ + C + H DC +C + ++++ + Sbjct: 62 GGGYLLKLPPAEVKIARIIRVIDGPIAPLLCVSLHFYDKCEDCSSEEACKIRPLMQQIRD 121 Query: 117 AFFDVLTQYSIECLVRN 133 A V +++ L N Sbjct: 122 ANLTVYENTTLQDLTYN 138 >gi|125974347|ref|YP_001038257.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|281418894|ref|ZP_06249912.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|125714572|gb|ABN53064.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|281407351|gb|EFB37611.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] Length = 149 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A++++ + ++ IAE IS +L ++ L K+G+V++ +G Sbjct: 1 MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA----ECFASHKIDCPLVGSCGLTSVLRKAL 115 +GG L I + +++A E V E + ++ + + K+L Sbjct: 61 AQGGYMLSEVPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120 Query: 116 NAFFDVLTQYSIECLVRNRSSI 137 N D +T + R R+ I Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142 >gi|148284617|ref|YP_001248707.1| iron-sulfur cluster assembly transcription regulation factor [Orientia tsutsugamushi str. Boryong] gi|146740056|emb|CAM80173.1| iron-sulfur cluster assembly transcription regulation factor [Orientia tsutsugamushi str. Boryong] Length = 148 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 1 MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y + VL + + P ++ +IA+ I+ +L ++ L GIV++V+G Sbjct: 1 MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GG L + TI D++ A EE + C S Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRCNNS 95 >gi|116253531|ref|YP_769369.1| Rrf2 family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258179|emb|CAK09280.1| putative Rrf2 family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 154 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L ++E V + I Sbjct: 122 IAAILDNMTLEQFVADGGRI 141 >gi|255264484|ref|ZP_05343826.1| transcriptional regulator [Thalassiobium sp. R2A62] gi|255106819|gb|EET49493.1| transcriptional regulator [Thalassiobium sp. R2A62] Length = 143 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L + A D ++IA+ + + + ++L L AG++ + RG GG RL R Sbjct: 11 LHALSHMAYDTDDAQTSAEIADHAGTNPVVVRRVLGKLRAAGLLTSERGHSGGWRLGRET 70 Query: 71 DQITILDVVKATEESFFVA 89 IT+ DV A E+ V+ Sbjct: 71 KHITLADVYAALGENLVVS 89 >gi|254421032|ref|ZP_05034756.1| rrf2 family protein (putative transcriptional regulator) [Brevundimonas sp. BAL3] gi|196187209|gb|EDX82185.1| rrf2 family protein (putative transcriptional regulator) [Brevundimonas sp. BAL3] Length = 160 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +++IA IS +L ++ L K+ +V++VRG GG RL + A + + ++V A +E Sbjct: 33 LAEIAARQEISLSYLEQLFARLRKSDLVKSVRGPGGGYRLAKGAHETVVAEIVLAVDEPI 92 Query: 87 FVAECFA-SHKIDCPLVGSCGLTSVLRKAL-NAFFDVLTQYSIECLVRNRSSIKK 139 C A C + G +T L + L + L S+E +V NR+ ++ Sbjct: 93 RATRCVAHGSPKGCMMAGERCITHDLWEDLGDEIHRYLAGVSLEDVVMNRTGQRR 147 >gi|268679955|ref|YP_003304386.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] gi|268617986|gb|ACZ12351.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] Length = 137 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 3 LTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+ + ++ A + P +I +I+ I + +L ++L L +AG+V +VRG Sbjct: 4 LSTKGMYGLSAMYQLFLA-KSSKPLQIKEISTRAEIPQNYLEQLLILLRQAGLVNSVRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFV 88 GG L + A+ I I D++ A E + V Sbjct: 63 YGGYLLAKAAENILIKDILIALEGNLLV 90 >gi|319955408|ref|YP_004166675.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola DSM 14237] gi|319424068|gb|ADV51177.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola DSM 14237] Length = 143 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 8/83 (9%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YG+R +++ A +D ++S I+E + F KILQ L K IV +++G Sbjct: 2 FSKSCEYGLRAVLFIAQQSDKDTKVSMSTISEEINSPQAFTAKILQKLTKTQIVHSLKGP 61 Query: 61 RGGVRL------CRPADQITILD 77 GG + + ++ +TILD Sbjct: 62 YGGFSILPEKMDTKLSEIVTILD 84 >gi|222053320|ref|YP_002535682.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221562609|gb|ACM18581.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 146 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + G+ ++ A + + IAE IS L K+++ LV G+V+ +RG Sbjct: 1 MKLNKASLLGLIAVLELADDPEQQLSTTDIAEKYDISTHHLAKVMRNLVHKGVVQAMRGV 60 Query: 61 RGGVRLCRPADQITILDVVK 80 GG R ++ T+LD+++ Sbjct: 61 GGGYRFAGNPNRTTLLDIIQ 80 >gi|15807194|ref|NP_295923.1| hypothetical protein DR_2201 [Deinococcus radiodurans R1] gi|6460004|gb|AAF11750.1|AE002053_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 155 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +I+++ I +L +IL L GIV++ +G GG L R I++ +VV+A + Sbjct: 30 EISDSTGIHRPYLVRILAALSAKGIVKSKKGIGGGYALARKPRLISLCEVVRAVDGPVAP 89 Query: 89 AECFA-SHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131 C + + C G C +V + +A VL ++S+E LV Sbjct: 90 LSCISLNWHEPCAEEGRCHARATVYTRMRDAMLGVLQEFSVEDLV 134 >gi|330685745|gb|EGG97380.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis VCU121] Length = 158 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++K + GI VL+ A SQ ++E +S+ L KIL+ LV A ++ + Sbjct: 1 MKISKHFEQGIYVLLILATQEGQGAVKSQTLSEKLEVSDSSLKKILRKLVVADLITSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKA 81 + GG +L R + IT+ DV++A Sbjct: 61 KDGGFQLNRSIEDITLKDVIEA 82 >gi|257414160|ref|ZP_04745427.2| iron-sulfur cluster assembly transcription factor IscR [Roseburia intestinalis L1-82] gi|257201011|gb|EEU99295.1| iron-sulfur cluster assembly transcription factor IscR [Roseburia intestinalis L1-82] Length = 130 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + IA IS+ +L +I+ L KA V+++RG +GG L + ++ T+ +++ TE Sbjct: 12 PISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRGAQGGYILTKRPEEYTVGMILRLTE 71 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALNAFFDVLT 123 S C C + C V +K A+N D +T Sbjct: 72 GSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAINQVVDSIT 113 >gi|227507946|ref|ZP_03937995.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192562|gb|EEI72629.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 159 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 20/121 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + +L+ A+ D+ P R I+ +S+ +L K+L +V G++ + G Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLRSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L +++T+LDV A E P++ S G+ S + FF Sbjct: 61 KGGGFSLSYDINRMTLLDVYNAIEGP-------------SPIIKSTGIASRI------FF 101 Query: 120 D 120 D Sbjct: 102 D 102 >gi|293396060|ref|ZP_06640341.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421558|gb|EFE94806.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582] Length = 157 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L + R IA + + + +IL L AG+ + G+ Sbjct: 1 MSTSTRFAVAIHILTNITLFRGQAVRSEDIARSVNTNPTVVRRILGALADAGLTHSQMGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA--------ECFASHKI 97 GG L +PA +IT+ D+ A E+ + EC+ H I Sbjct: 61 GGGALLAKPASEITLRDIYHAVEDQPYFPLHRSKPNDECYIGHAI 105 >gi|190892504|ref|YP_001979046.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190697783|gb|ACE91868.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 162 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +AE + + +L K LQ L +A +V+T G GG RL R + +I LD+V+A E Sbjct: 31 LAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARASCEINFLDIVEAVE 84 >gi|303238934|ref|ZP_07325465.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] gi|302593567|gb|EFL63284.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] Length = 149 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A+H + + IAE IS +L ++ L K+G+V++V+G Sbjct: 1 MKFSTKGRYGLRAMVDLAVHAKGEHVALCSIAERQGISMNYLEQVFSVLRKSGLVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 +GG L I + +++ E V + A + + + SC V K + Sbjct: 61 AQGGYILSESPADIKVGRILRVLEGPLSVIDEDAENSTENESRIQSCIRMCVWDKMNESL 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 D+ ++E LV N + I Sbjct: 121 NDLADSLTLEDLVDNYWKMNGI 142 >gi|222102654|ref|YP_002539693.1| hypothetical protein Avi_7313 [Agrobacterium vitis S4] gi|221739255|gb|ACM39988.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 172 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L ++++ I +L CA +A+ + ++++ LV+ G + + RG Sbjct: 1 MRLKRQSEIAIGILTVCAKSPSTKYPAQHLAQEVGATRDHAYQVVALLVRNGFLNSDRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A I + DV++ T+ + A L G L ++ A + Sbjct: 61 GGGLRLARDAKDIKLADVLRITQPEL---DGNAEEPEPGTLKGQPLLDGIVAAASSFLVS 117 Query: 121 VLTQYSIECLVRNRSS 136 +L ++++ LV + S Sbjct: 118 LLDRFTVADLVASPDS 133 >gi|332297044|ref|YP_004438966.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] gi|332180147|gb|AEE15835.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] Length = 140 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE C + + + K+L L A +VET G GG R A +T+ DV F V Sbjct: 27 LAENICTNPVRIRKVLSKLAGAALVETKEGADGGYRFTGDAAHVTLADVAGILNVDFTVM 86 Query: 90 ECFASHKIDCPLVGSCGLTSVL 111 + S ID P + S G+ + + Sbjct: 87 N-WRSGSIDKPCLISSGMAAAM 107 >gi|226227480|ref|YP_002761586.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226090671|dbj|BAH39116.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 146 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ ++ +R ++ A H N +A+ +L K L L KAG+V + RG Sbjct: 2 LSATAEHAMRAVLLLARHGNATALSADAMADQLGAPRNYLAKTLNALAKAGVVHSARGAA 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L P D +T+ ++ ++ V C Sbjct: 62 GGFTLAVPPDVLTVQRIIAPFDDHSRVPACL 92 >gi|329922262|ref|ZP_08277964.1| transcriptional regulator [Paenibacillus sp. HGF5] gi|328942299|gb|EGG38569.1| transcriptional regulator [Paenibacillus sp. HGF5] Length = 147 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE V+ Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVE-VKPG 59 Query: 61 RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVG---SCGLTSVLRK 113 G +L +P IT+LD+ A E S F + CP VG + V Sbjct: 60 VAGAKLAKPPSGITLLDIYHAVHVVQEGSLF--GIHENSDTKCP-VGKHIQTAIVPVFSA 116 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A D L + ++E +VR Sbjct: 117 AQKAMEDTLHEVNLEQIVR 135 >gi|89054747|ref|YP_510198.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1] gi|88864296|gb|ABD55173.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1] Length = 136 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D + IA+ + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLGHMAGAPDKLRTSADIADHAGTNPVVVRRVLGRLREAGLLISEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R IT+ DV A +ES + ++ V SC + L + +++ Sbjct: 61 AGGWRLARAPQSITLADVYLALDESLVAS-------VESDDVPSCSVEHALHRRVSSVMK 113 Query: 121 VLTQYSIECL 130 + Q IE L Sbjct: 114 DIEQSLIERL 123 >gi|238062427|ref|ZP_04607136.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884238|gb|EEP73066.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 141 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 ++A + + + + + L L +AG+V RG G L RPA +IT+LDV A + Sbjct: 32 EVAASVNTNAVIVRRSLGDLQRAGLVRARRGNGAGFSLGRPATEITLLDVWLAVSPEPLL 91 Query: 89 AECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSI 127 A + ++C VG LT + +A N F L ++++ Sbjct: 92 ALHHSEPNLECQ-VGRGIRPVLTDLYDEATNTFRAALARWTV 132 >gi|256827446|ref|YP_003151405.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] gi|256583589|gb|ACU94723.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] Length = 167 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ + LMY + + I +AE IS +L K L KA IV + G Sbjct: 1 MKFSISIEHALHCLMYMVDVEENKSIGIRDLAEFQGISASYLSKTFTRLAKAHIVLSSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87 +GG RL R + I+ D+V+A E + FF Sbjct: 61 VKGGYRLARTPEAISFWDIVEAIEGKDPFF 90 >gi|260221649|emb|CBA30424.1| HTH-type transcriptional regulator iscR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 176 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R + I ++ A+ + P + IA IS +L ++ L + G+VE+ RG Sbjct: 1 MRLSTRGRFAITAMIDLALRESGQPVPLQDIALRHRISLSYLEQVFAKLRQNGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L D IT+ D++ A EE Sbjct: 61 PGGGYSLGFRGDSITVADIIGAIEE 85 >gi|300777499|ref|ZP_07087357.1| possible transcription regulator [Chryseobacterium gleum ATCC 35910] gi|300503009|gb|EFK34149.1| possible transcription regulator [Chryseobacterium gleum ATCC 35910] Length = 143 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR L++ A + +RI I+ E F+ KILQ L + G V++ +G Sbjct: 2 FSKTCEYAIRALIFIAQKSKDGSRIGIKDISSGIDSPEYFIAKILQDLSRKGFVQSAKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + ++ D+V+ + + C K +C C + + + Sbjct: 62 NGGFYMDDANLEQSVADIVREIDGDKLFSGCGLGLK-ECSEDHPCPIHNDFKHIRQEIKT 120 Query: 121 VLTQYSIECLVRN 133 +L + I+ V N Sbjct: 121 MLEESRIQLFVEN 133 >gi|261408945|ref|YP_003245186.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285408|gb|ACX67379.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 150 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE V+ Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVE-VKPG 59 Query: 61 RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVG---SCGLTSVLRK 113 G +L +P IT+LD+ A E S F + K CP VG + V Sbjct: 60 VAGAKLAKPPSGITLLDIYHAVHVVQEGSLFGIHENSDAK--CP-VGKHIQTAIVPVFSA 116 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A D L + ++E +VR Sbjct: 117 AQKAMEDTLHEVNLEQIVR 135 >gi|168183029|ref|ZP_02617693.1| rrf2 family protein [Clostridium botulinum Bf] gi|237794464|ref|YP_002862016.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] gi|182673737|gb|EDT85698.1| rrf2 family protein [Clostridium botulinum Bf] gi|229263280|gb|ACQ54313.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] Length = 145 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEETVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L + + IT ++++A E V E Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92 >gi|288905395|ref|YP_003430617.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306831475|ref|ZP_07464633.1| transcriptional regulator superfamily protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978384|ref|YP_004288100.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732121|emb|CBI13686.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304426260|gb|EFM29374.1| transcriptional regulator superfamily protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178312|emb|CBZ48356.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 159 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K + + VL A+ ++ P + +++ +S+ +L KIL L +AG++++ Sbjct: 1 MKLNKSFEQAVYVLTMLALQENHTPVKSHVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKI--DCPLVGSC--GLTSVLRKA 114 + GG +L + IT+ DV A + V E +H I D V + L K Sbjct: 61 KVGGYQLAQSVTTITLKDVFFALDLQANVIEFKHMAHHIYDDTSHVKQVENKVQQTLEKG 120 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 L AF+ L +I L++ + Sbjct: 121 LFAFYHELDTLTIADLLQEEA 141 >gi|47097212|ref|ZP_00234776.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854] gi|47014426|gb|EAL05395.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854] Length = 67 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGG 63 GG Sbjct: 61 AHGG 64 >gi|291278641|ref|YP_003495476.1| BadM/Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753343|dbj|BAI79720.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter desulfuricans SSM1] Length = 139 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T ++ Y I + A++ D + IA+ I + FL L L GIV + +G Sbjct: 1 MNVTSKSIYAIIAVYELALNKDKFIKSDVIAKKYNIPKRFLEITLSELKTNGIVISKKGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + ++I+I D++ TE V C Sbjct: 61 GGGFALKKLPEEISIFDIITITENDLKVFNC 91 >gi|226312193|ref|YP_002772087.1| hypothetical protein BBR47_26060 [Brevibacillus brevis NBRC 100599] gi|226095141|dbj|BAH43583.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 146 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L +I ++ IA + + + + ++L L KAG+V VR Sbjct: 1 MKISSRFSIAVHILSLLSIDSNSHCTSEWIAGSVNTNPVVIRRVLGLLKKAGLV-NVRAG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + DQIT+L++ +A + E + DCP+ + L +L +A + Sbjct: 60 AGGASLAKELDQITLLEIYRAVDVVEEGQLFHIHEQPNPDCPVGANIQFVLELILTRAQH 119 Query: 117 AFFDVLTQYSIECLVRN 133 A ++L + LV N Sbjct: 120 AMEEILGGVKMSELVDN 136 >gi|167586740|ref|ZP_02379128.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia ubonensis Bu] Length = 127 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I++ IS +L ++ L + IVE+VRG GG L R A +T+ D++ A + Sbjct: 9 PVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTVADIIIAVD 68 Query: 84 ESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA-FFDVLTQYSIECLV 131 E +C D G C +T L LN + L S++ LV Sbjct: 69 EPLDATQCGGKGTCDGSKQPDGHC-MTHELWATLNQKMVEYLDSVSLQDLV 118 >gi|302387002|ref|YP_003822824.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197630|gb|ADL05201.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 141 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 1 MHLTKRTDYGIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M + T I +L+Y ++N NR+ I+E I + KI+ L AGI+ Sbjct: 1 MAYSSATYQAISILIYIHYKIRAELYNYLSNRV--ISEQLNIPAPTVVKIMGKLKSAGII 58 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATE 83 + G +GG L +P IT+ DV A E Sbjct: 59 DVREGMKGGNMLAKPLTDITLFDVFDAME 87 >gi|46201310|ref|ZP_00055264.2| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 144 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 9 YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + I ++ A H P + +I I +L + LQ +V+AGI+ VRG RGG RL Sbjct: 3 FAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQMVRAGILVGVRGPRGGYRLA 62 Query: 68 RPADQITILDVVK 80 R +I++ +VV+ Sbjct: 63 RERRRISVGEVVR 75 >gi|322805498|emb|CBZ03062.1| predicted transcriptional regulator of cysteine synthase, Rrf2 family [Clostridium botulinum H04402 065] Length = 145 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L + + IT ++++A E V E Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92 >gi|170759361|ref|YP_001786561.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406350|gb|ACA54761.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] Length = 145 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L + + IT ++++A E V E Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92 >gi|312880753|ref|ZP_07740553.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] gi|310784044|gb|EFQ24442.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] Length = 157 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT+ ++Y A P +I + +E + K LQ L++ G++ + +G Sbjct: 5 MNLTETLSLAFHSMVYLAERRGPRPCSAREIGDHFGATEPLVTKTLQRLLRTGLIRSCKG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVG---------SCGLT 108 GG L P +++++L + +A E C ++ CP+ G S L Sbjct: 65 PGGGYSLVVPPEEVSLLSIAEAVEGPLKSQGCALKGCNRPPCPVKGLVDAVTERVSQELA 124 Query: 109 SVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 S L F + + EC +++R KK Sbjct: 125 SKTLAELVECFHGEEETATECTLKHRRRRKK 155 >gi|257459683|ref|ZP_05624792.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] gi|257443108|gb|EEV18242.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] Length = 137 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+ ++ A ++ P I +IAE +S+ +L +IL L +V +++G+ Sbjct: 4 LSTKGVYGLAAILQIAKASEVAPISIKEIAERTGVSKNYLEQILNTLRNEKLVCSIKGKN 63 Query: 62 GGVRLCRPADQITILDVVKATEE 84 GG L R A +I+ ++ A E+ Sbjct: 64 GGYHLARDASEISFGEIFTALEK 86 >gi|21232974|ref|NP_638891.1| hypothetical protein XCC3545 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766953|ref|YP_241715.1| hypothetical protein XC_0614 [Xanthomonas campestris pv. campestris str. 8004] gi|21114816|gb|AAM42815.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572285|gb|AAY47695.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 157 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ +H + P QIA + + + + + L +AG V++ +G G Sbjct: 2 RTDSRLSRMLHVLLHMARSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHHG 61 Query: 63 GVRLCRPADQITILDVVKA 81 G +L R Q+T+LDV +A Sbjct: 62 GWQLARDLAQVTLLDVHRA 80 >gi|296125727|ref|YP_003632979.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017543|gb|ADG70780.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii DSM 12563] Length = 140 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 13/117 (11%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 I+E+ ++ + + IL L KA I+ RG GG+ L + + IT+LD+ A ES Sbjct: 30 ISESVQVNPVIIRNILIQLQKADIITVKRGT-GGISLNKKTENITLLDIFNAV-ESLDEG 87 Query: 90 ECFASHK---IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 + F+ H+ CP+ G+ + +L+ L++ QY++E ++ ++++K I+ + Sbjct: 88 KLFSFHENPNKKCPVGGN--INKILQPKLDS-----VQYAMEKELK-KTTLKDIYKS 136 >gi|217960811|ref|YP_002339375.1| rrf2 family protein [Bacillus cereus AH187] gi|217065699|gb|ACJ79949.1| rrf2 family protein [Bacillus cereus AH187] Length = 137 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ C+ + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 D++ + + + T E +C S+ C + S +RK L F Sbjct: 68 LDEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110 >gi|116512690|ref|YP_811597.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108344|gb|ABJ73484.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis subsp. cremoris SK11] Length = 154 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 4/97 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K + + VL+ A D S+ +++ +S+ L K+L+ LV ++E+ Sbjct: 1 MKLSKHLEEAVYVLLILATQKDQQALKSKTLSKLLEVSDSSLKKVLRQLVVNNLIESTAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASH 95 + GG +L + ++I++ DV+ A E E F A+ SH Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADL--SH 95 >gi|148379163|ref|YP_001253704.1| rrf2 family protein [Clostridium botulinum A str. ATCC 3502] gi|153932538|ref|YP_001383539.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|153935743|ref|YP_001387088.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|153939009|ref|YP_001390526.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|168178597|ref|ZP_02613261.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|170754484|ref|YP_001780801.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|187780211|ref|ZP_02996684.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC 15579] gi|226948445|ref|YP_002803536.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|148288647|emb|CAL82728.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928582|gb|ABS34082.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|152931657|gb|ABS37156.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|152934905|gb|ABS40403.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|169119696|gb|ACA43532.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|182670637|gb|EDT82611.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|187773836|gb|EDU37638.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC 15579] gi|226844524|gb|ACO87190.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|295318607|gb|ADF98984.1| rrf2 family protein [Clostridium botulinum F str. 230613] Length = 145 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +GG L + + IT ++++A E V E Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92 >gi|89902226|ref|YP_524697.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346963|gb|ABD71166.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 182 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + + ++ A+ P +S IA IS +L ++ L + G+V + RG Sbjct: 1 MRLSTKGRFAVTAMIDVALREKLGPVPLSDIAVRQQISLSYLEQMFSKLRQHGLVASTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L + AD+IT+ D++ A E+ Sbjct: 61 PGGGYALGQQADRITVADIIGAVED 85 >gi|190893190|ref|YP_001979732.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190698469|gb|ACE92554.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 154 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +L ++E V Sbjct: 122 IAAILDNMTLEQFV 135 >gi|313895665|ref|ZP_07829221.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp. oral taxon 137 str. F0430] gi|320528904|ref|ZP_08029996.1| Rrf2 family protein [Selenomonas artemidis F0399] gi|312975791|gb|EFR41250.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp. oral taxon 137 str. F0430] gi|320138534|gb|EFW30424.1| Rrf2 family protein [Selenomonas artemidis F0399] Length = 147 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 2/101 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI +++ A + D P I I+E IS+++L ++ L ++ +V +++ Sbjct: 1 MKISAKGRYGIAAMVFLARNYDASSPITIISISEHLGISKIYLEQVFSLLKRSRLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G +GG +L R +I DV+ + E S A+ K+D Sbjct: 61 GSQGGYQLSRHPREINAYDVLSSIEISLIEKAGPATDKMDA 101 >gi|255262733|ref|ZP_05342075.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] gi|255105068|gb|EET47742.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] Length = 152 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + Y + L+ A+ ++ +I++ IS +L ++ L + G+VE+VR Sbjct: 1 MKLSTKGRYAMVALVDLALLQSDARLVTLGEISKRQDISLPYLEQLFVKLRREGLVESVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85 G GG RL R + I ++D++ A +E+ Sbjct: 61 GPGGGYRLARASSDIRVVDILGAVDET 87 >gi|239834897|ref|ZP_04683225.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] gi|239822960|gb|EEQ94529.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] Length = 156 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MH LTK+ YG++ L + A + +++IA IS+ FL IL L GI+ + + Sbjct: 1 MHMLTKKGKYGLKALAHLAALAPGESAFVAEIAARNNISKKFLDAILLELRNDGILRSKK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKA 114 G GG L +PA +ITI VV+ + C + DC +C + + Sbjct: 61 GPGGGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCDDCEDHRACQVRRSMLLV 120 Query: 115 LNAFFDVLTQYSIECLVRN 133 A VL ++E RN Sbjct: 121 REAIAGVLDTMTLEQFARN 139 >gi|167006390|ref|YP_001661613.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1] gi|166162472|gb|ABY83593.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1] Length = 144 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L +AG+VE+ RG G L R + +T+LDV +A E Sbjct: 32 QIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSLARELESMTLLDVYEAVEPGPLF 91 Query: 89 A--------ECFASHKIDCPLVGSC--GLTSVLRKAL------NAFFDVL 122 A EC H I P + S G+ +R L N DVL Sbjct: 92 AMHRATPDPECVVGHGIQ-PAMQSIYEGIEETVRHELARVTLANVLQDVL 140 >gi|332830471|gb|EGK03099.1| hypothetical protein HMPREF9455_01349 [Dysgonomonas gadei ATCC BAA-286] Length = 136 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 I +DY +A + I+ + + K L L + GIV + G+ GG L +PAD+I + D+ Sbjct: 24 ISSDY------LAGSMNINPVLVRKELSNLRRHGIVVSKEGKNGGSMLAKPADKILLSDI 77 Query: 79 VKATEESFFVAECFASHKIDCPL 101 + + AS CP+ Sbjct: 78 YRIVSSQTALGNSLASPNPKCPV 100 >gi|315649061|ref|ZP_07902154.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315275496|gb|EFU38851.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 148 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE V+ Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGISTSDYIAESVNTNPVVIRRIVGMLSKAGLVE-VKPG 59 Query: 61 RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVG---SCGLTSVLRK 113 G +L + +IT+LD+ A E+S F + CP VG + V Sbjct: 60 VAGAKLAKHPAEITLLDIYHAVHVVQEDSLF--SIHENSDTKCP-VGKHIQTAIVPVFSA 116 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A + L + S+E ++RN Sbjct: 117 AQKAMENTLHEVSLEEIIRN 136 >gi|218133327|ref|ZP_03462131.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC 43243] gi|217992200|gb|EEC58204.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC 43243] Length = 147 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DY-PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + Y +RV+ A H D+ P + +I+ IS +L I+ L K +V + Sbjct: 1 MMISTKGRYALRVMTDLAQHGTGDFIP--LKEISARQGISLKYLESIMTILSKGHMVRSA 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G+ GG L + ++ + D+++ TE C A C L C + +A Sbjct: 59 SGKGGGYCLIKSPEEYRVGDILRLTEGDLAPVACLAPDTKKCDLTNECYTLPFWKGLGDA 118 Query: 118 FFDVLTQYSIECLVRNRS 135 + L +++ LV S Sbjct: 119 INEYLDGHTLADLVSGSS 136 >gi|253701416|ref|YP_003022605.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251776266|gb|ACT18847.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 154 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + + + ++ A + S IA+ IS L K+++ LV G+V+ +RG Sbjct: 1 MKLNKASLFALISVLELASDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAFF 119 GG R ++ T+LD+++ E + +K P++ +TS + A Sbjct: 61 GGGYRFAGNVNRTTLLDIIQLFETLESELDLPHWNKAAEPVISELHSVTSEIDTVTRAIL 120 Query: 120 DVLTQYSIECLVRN 133 D +T + L++N Sbjct: 121 DTIT---LSTLLKN 131 >gi|116052211|ref|YP_788945.1| hypothetical protein PA14_09960 [Pseudomonas aeruginosa UCBPP-PA14] gi|296387274|ref|ZP_06876773.1| hypothetical protein PaerPAb_04052 [Pseudomonas aeruginosa PAb1] gi|115587432|gb|ABJ13447.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 142 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH ++ P IA+ + + + + + L G V + +G RG Sbjct: 2 RNDTRLSRMLHVLIHMARHEGPATSEAIAQMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G RL +P IT+LD+ +A S A ++ +C Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98 >gi|23013034|ref|ZP_00052988.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 130 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 35/73 (47%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ++ IAE IS +L ++ L K G+V++VRG GG L R Q I D++ A +E Sbjct: 1 MADIAERQEISLSYLEQLFGKLRKGGLVKSVRGPGGGYLLSRIPQQTRISDIILAVDEPI 60 Query: 87 FVAECFASHKIDC 99 C C Sbjct: 61 QTTRCSPGSPAGC 73 >gi|78776924|ref|YP_393239.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78497464|gb|ABB44004.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas denitrificans DSM 1251] Length = 133 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ ++Y I L+ + P ++ I + FL KILQ + K GI+++ +G Sbjct: 1 MLITRASEYAILSLIVLS-KASAPMDSETLSTQLSIPKSFLAKILQAMAKHGILKSFKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP 100 GG L I +L V+ + E ++ V EC S CP Sbjct: 60 NGGFSLLLEPKDIKMLQVIASVEGKAPAVFECSPSM-YSCP 99 >gi|306833586|ref|ZP_07466713.1| transcriptional regulator superfamily protein [Streptococcus bovis ATCC 700338] gi|304424356|gb|EFM27495.1| transcriptional regulator superfamily protein [Streptococcus bovis ATCC 700338] Length = 159 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K + + VL A+ ++ P + +++ +S+ +L KIL L +AG++++ Sbjct: 1 MKLNKSFEQAVYVLTMLALQENHTPVKSRVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKI--DCPLVGSC--GLTSVLRKA 114 + GG +L + IT+ DV A + V E +H I D V + L K Sbjct: 61 KVGGYQLAQSVTTITLKDVFFALDLQANVIEFKHMAHHIYDDTSHVKQVENKVQQTLEKG 120 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 L AF+ L +I L++ + Sbjct: 121 LFAFYHELDTLTIADLLQEEA 141 >gi|116252972|ref|YP_768810.1| Rrf2 family transcriptional regulator protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257620|emb|CAK08717.1| putative Rrf2 family transcriptional regulator protein [Rhizobium leguminosarum bv. viciae 3841] Length = 162 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +A +VET G GG RL + Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYRLAKTPSD 73 Query: 73 ITILDVVKATE---ESFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQ 124 I L++V+A E SF A++ C G C + ++ +A A+ D L + Sbjct: 74 INFLEIVEAVEGKARSFTCTNIRANNP--CRPEGYCDSKPCAVARIMWEADEAWRDTLRR 131 Query: 125 YSIECLV 131 + LV Sbjct: 132 VRLSDLV 138 >gi|284045053|ref|YP_003395393.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283949274|gb|ADB52018.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 130 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + +T ++ Y +R L + P I+++A I FL ++ L +AG++++ RG Sbjct: 2 ISITTKSPYALRALTELGRLGGSGPVPIAELARRREIPVQFLEQLFAVLRRAGVLKSQRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 +GG R +IT+L++V+ + +F Sbjct: 62 VKGGYSFAREPGEITVLEIVELLDGAF 88 >gi|291545297|emb|CBL18406.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. 18P13] Length = 147 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ D S+ +A + + + + K+L L AG+VE RG Sbjct: 1 MQISSRFTLAVHILLCLDTFRDQYKVTSEFLAGSTNVHPVMIRKLLGQLKTAGLVEVTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG + +P +QIT+LDV +A + Sbjct: 61 S-GGASIAKPLEQITLLDVYRAVD 83 >gi|86358962|ref|YP_470854.1| hypothetical protein RHE_CH03364 [Rhizobium etli CFN 42] gi|86283064|gb|ABC92127.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 154 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +L ++E V Sbjct: 122 IAAILDNMTLEQFV 135 >gi|218463489|ref|ZP_03503580.1| putative transcriptional regulator protein [Rhizobium etli Kim 5] gi|218663550|ref|ZP_03519480.1| putative transcriptional regulator protein [Rhizobium etli IE4771] Length = 154 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +L ++E V Sbjct: 122 IAAILDNMTLEQFV 135 >gi|195940887|ref|ZP_03086269.1| BadM/Rrf2 family transcriptional regulator [Escherichia coli O157:H7 str. EC4024] Length = 130 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 F+ K++ PL + GI+ + GR G + L RPA++IT+ D+ + E Sbjct: 41 FIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEITLRDIYLSVTE 85 >gi|308371930|ref|ZP_07426693.2| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis SUMu004] gi|308373100|ref|ZP_07431000.2| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis SUMu005] gi|308374277|ref|ZP_07435406.2| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis SUMu006] gi|308376685|ref|ZP_07439652.2| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis SUMu008] gi|308378898|ref|ZP_07484226.2| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis SUMu010] gi|308335059|gb|EFP23910.1| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis SUMu004] gi|308338867|gb|EFP27718.1| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis SUMu005] gi|308342552|gb|EFP31403.1| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis SUMu006] gi|308350358|gb|EFP39209.1| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis SUMu008] gi|308358935|gb|EFP47786.1| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis SUMu010] Length = 159 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + +Y +R ++ A + + +A A I FL IL L +V + RGR Sbjct: 1 MSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60 Query: 62 GGVRLCRPADQITILDVVK 80 GG L RP +I+I DV++ Sbjct: 61 GGYELARPGTEISIADVLR 79 >gi|310642195|ref|YP_003946953.1| transcriptional regulator, badm/rrf2 family [Paenibacillus polymyxa SC2] gi|309247145|gb|ADO56712.1| Transcriptional regulator, BadM/Rrf2 family [Paenibacillus polymyxa SC2] Length = 149 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA----TEESFFVAECFASH 95 L +IL L K G++ T GR GG L +PA+ I ++DV + SF + E +H Sbjct: 49 LLRRILSVLAKEGLIGTREGRDGGYHLRKPAESIRLVDVYDVFRSDSRLSFGITETAGTH 108 Query: 96 KIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSIECLVRN 133 PL G C L + ++ ++ VL++Y+I L Sbjct: 109 ----PL-GKCMKSTLEDITQEMDDSIRGVLSKYTIADLANQ 144 >gi|260221138|emb|CBA29404.1| HTH-type transcriptional regulator iscR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 145 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + + P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQSSGPVTLAAISQRQQISLSYLEQLFGKLRRHDLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L R A IT+ +++ + +E +C S K +C Sbjct: 61 PGGGYTLARKASDITVAEIITSVDEPIDATQC--SGKENC 98 >gi|144900811|emb|CAM77675.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 136 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +IA+ IS L K+L+ L +AG++E VRG GG R + T+LDV++ Sbjct: 29 EIADKYGISTNHLAKVLRSLGRAGLLEAVRGAGGGYRFSGSVKRTTLLDVIQ 80 >gi|317969720|ref|ZP_07971110.1| transcriptional regulator [Synechococcus sp. CB0205] Length = 144 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +S+IAEA + L ++L L +A +VE RGR+GG RL RPA+ I + +V+KA Sbjct: 26 VSEIAEAQGLPAPMLEQLLLQLRRAALVEAKRGRQGGYRLSRPAEAIPVGEVLKAVGAPL 85 Query: 87 FVAECFASHKIDCPLVGSCG--LTSVLRKALNA------FFDVLTQYSIECL 130 + S + + ++ S G L S L + L FD+ Q ECL Sbjct: 86 VLDAPGDSSRAEQDVLKSMGRRLQSALDRELKQLTLQELLFDL--QSWQECL 135 >gi|309379665|emb|CBX21654.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 148 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118 GG L PA +I I ++ A E+ +C + K +C C LT L + LN Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117 Query: 119 FDVLTQYSIECLVRNRSS 136 D L +++ ++ ++S Sbjct: 118 NDYLGSVTLQSIIEQKNS 135 >gi|241205480|ref|YP_002976576.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859370|gb|ACS57037.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 162 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 CAI P +AE + + +L K LQ L +A +VET G GG RL + Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYRLAKTPSD 73 Query: 73 ITILDVVKATE---ESFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQ 124 I L++V+A E SF A++ C G C + ++ +A A+ D L + Sbjct: 74 INFLEIVEAVEGKARSFTCTNIRANNP--CRPEGYCDSKPCAVARIMWEADEAWRDTLRR 131 Query: 125 YSIECLV 131 + LV Sbjct: 132 VRLSDLV 138 >gi|302557214|ref|ZP_07309556.1| transcriptional regulator superfamily protein [Streptomyces griseoflavus Tu4000] gi|302474832|gb|EFL37925.1| transcriptional regulator superfamily protein [Streptomyces griseoflavus Tu4000] Length = 144 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 15/109 (13%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L +AG+VE+ RG G L R + +T+LDV +A E Sbjct: 32 QIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSLARELESMTLLDVYEAVEPGPLF 91 Query: 89 A--------ECFASHKIDCPLVG-SCGLTSVLRKAL------NAFFDVL 122 A C H I + G G+ LR L N DVL Sbjct: 92 AMHRTTPDQGCVVGHGIQPVMQGIYEGIEETLRHELARVTLENVLRDVL 140 >gi|213029354|ref|ZP_03343801.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 85 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKA 81 GG L + A I + +V+ Sbjct: 61 PGGGYLLGKDAGSIAVGEVISG 82 >gi|125624777|ref|YP_001033260.1| hypothetical protein llmg_2002 [Lactococcus lactis subsp. cremoris MG1363] gi|124493585|emb|CAL98570.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071577|gb|ADJ60977.1| hypothetical protein LLNZ_10320 [Lactococcus lactis subsp. cremoris NZ9000] Length = 154 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K + + VL+ A D S+ ++ +S+ L K+L+ LV ++E+ Sbjct: 1 MKLSKHLEEAVYVLLILATQKDQQALKSKTLSNLLEVSDSSLKKVLRQLVVNNLIESTAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASH 95 + GG +L + ++I++ DV+ A E E F A+ SH Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADL--SH 95 >gi|58617149|ref|YP_196348.1| hypothetical protein ERGA_CDS_04220 [Ehrlichia ruminantium str. Gardel] gi|58416761|emb|CAI27874.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 145 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P RIS IA +SE +L +++ L K G++ +G GG L IT+ ++++ Sbjct: 19 PVRISYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESIG 78 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF-DVLTQYSIECLVRN--RSSI 137 E+ + C ++ DC + +T L + + D L S+E +V N RS+I Sbjct: 79 ENIKITRC-ENNSPDCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNNFRSNI 134 >gi|94985506|ref|YP_604870.1| BadM/Rrf2 family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555787|gb|ABF45701.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus geothermalis DSM 11300] Length = 155 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +I+EA + +L +IL L GIV++ +G GG L R I++ +VV+A + Sbjct: 30 EISEATGVHRPYLVRILAALTAKGIVKSKKGIGGGYALSRKPRLISLCEVVRAIDGPVAP 89 Query: 89 AECFA-SHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131 C + + C C +V ++ +A VL ++S+E LV Sbjct: 90 LSCISLNWHEPCVEEARCHARATVYQRMRDAMLAVLQEFSVEDLV 134 >gi|295097954|emb|CBK87044.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 148 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 27/39 (69%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPA++IT+ D+ Sbjct: 30 FIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEITLRDI 68 >gi|302384457|ref|YP_003820279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302195085|gb|ADL02656.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 143 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 ++A C + + K++ L KAGI+ T G GG + + ++ + + A + + FV Sbjct: 26 ELASNVCTNPARVRKVMAKLKKAGIITTKEGLEGGYHFAKDSSEVNLKSICDALDVT-FV 84 Query: 89 AECFASHKIDCPLVGSCGLTSVL 111 + + S +D P + + G++ V+ Sbjct: 85 SSSWKSGNVDTPCMIASGMSGVM 107 >gi|188990044|ref|YP_001902054.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. campestris str. B100] gi|167731804|emb|CAP49988.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. campestris] Length = 181 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ +H + P QIA + + + + + L +AG V++ +G G Sbjct: 26 RTDSRLSRMLHVLLHMARSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHHG 85 Query: 63 GVRLCRPADQITILDVVKA 81 G +L R Q+T+LDV +A Sbjct: 86 GWQLARDLAQVTLLDVHRA 104 >gi|163734987|ref|ZP_02142424.1| transcriptional regulator, rrf2 family, putative [Roseobacter litoralis Och 149] gi|161391769|gb|EDQ16101.1| transcriptional regulator, rrf2 family, putative [Roseobacter litoralis Och 149] Length = 140 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + IAE + + + ++L L +AG++ + +G GG RL R +IT+ DV A +ES Sbjct: 28 ADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGHAGGWRLAREPHEITLADVYLALDESLV 87 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 + + SC + ++L++ + + + + + +E L Sbjct: 88 ATG-------EQEVASSCSVENILQRKVASVLEDVERSLVERL 123 >gi|125654633|ref|YP_001033827.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126464902|ref|YP_001041878.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221634495|ref|YP_002523183.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332561319|ref|ZP_08415634.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77386293|gb|ABA81722.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126106717|gb|ABN79242.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|221163368|gb|ACM04330.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332274118|gb|EGJ19435.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 169 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 7/148 (4%) Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A + P RI IA+ + FL IL + AG + + RG Sbjct: 2 ITQKMKYALKALMVLAEEKSGDRRPLRIEDIAQRSGTPKRFLEHILLDIRNAGYIASTRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + Q+ + ++++ + C + DC +C + V Sbjct: 62 RSGGYLLIKEPAQVPLSELLRMIDGPIAPLPCLSRRSYQKCEDCTDEETCRIRKVFAGIF 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 ++ ++ ++ LV ++ ++I A Sbjct: 122 WSYLVLIDSLTLADLVGVPAAAEQILAA 149 >gi|16126109|ref|NP_420673.1| RrF2 family protein [Caulobacter crescentus CB15] gi|221234879|ref|YP_002517315.1| Rrf2 family protein [Caulobacter crescentus NA1000] gi|13423309|gb|AAK23841.1| RrF2 family protein [Caulobacter crescentus CB15] gi|220964051|gb|ACL95407.1| Rrf2 family protein [Caulobacter crescentus NA1000] Length = 158 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ + Y + + A D + +++IA IS +L ++ L + G+V + Sbjct: 1 MRLSTKGRYAVMAMTDLAKRQDESDGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 RG GG RL + +D+ I D+V A +E C Sbjct: 61 ARGPGGGYRLAKASDETFIADIVLAVDEPLRATRC 95 >gi|167628913|ref|YP_001679412.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] gi|167591653|gb|ABZ83401.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] Length = 161 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++K+TDY +R L C + Y P + ++AE I + FL I+ + + V +V Sbjct: 1 MKISKKTDYALRAL--CDLAECYGKDPIPLRELAEKRGIPKRFLEHIMLYMKEKKWVASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVK 80 G+ GG L P ++IT+ +VV+ Sbjct: 59 PGKYGGYVLACPPEEITLGEVVR 81 >gi|26553766|ref|NP_757700.1| hypothetical protein MYPE3120 [Mycoplasma penetrans HF-2] gi|26453773|dbj|BAC44104.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 143 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +A + ++ + + KIL L +G++E RG GG + +P DQI+ LD+ KA E Sbjct: 31 LASSTNVNPVIIRKILLQLKSSGLIEVQRGS-GGSSIAKPLDQISFLDIYKAVE 83 >gi|218682838|ref|ZP_03530439.1| Rrf2 family transcriptional regulator [Rhizobium etli CIAT 894] Length = 148 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTALADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIVDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSI 127 VL +I Sbjct: 122 TRKVLFSTTI 131 >gi|329889571|ref|ZP_08267914.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] gi|328844872|gb|EGF94436.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] Length = 142 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +++IA IS +L ++ L K G+V+++RG GG RL + ++ + D+V A +E Sbjct: 15 LAEIATRQEISLSYLEQLFARLRKGGLVKSIRGPGGGYRLAKGPEETVVADIVLAVDEPI 74 Query: 87 FVAECFA 93 C A Sbjct: 75 RATRCAA 81 >gi|169805235|gb|ACA83733.1| putative transcriptional regulator [Rhodothermus marinus] Length = 150 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 L +I+ L AG+ + +RG GGVRL RPA +IT+ ++++ + + C Sbjct: 47 LARIMLRLTAAGLTDALRGPGGGVRLARPAHEITLFEILQEIDGPEVLNRCI 98 >gi|148242252|ref|YP_001227409.1| transcriptional regulator [Synechococcus sp. RCC307] gi|147850562|emb|CAK28056.1| Predicted transcriptional regulator [Synechococcus sp. RCC307] Length = 149 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 ++A+ + E L +IL L +A +VE RGR GG RL R AD +++ DV+ A Sbjct: 28 ELAKRQELPEARLEQILLQLRQAQLVEARRGRSGGYRLSRRADDLSVQDVLDA 80 >gi|58039649|ref|YP_191613.1| hypothetical protein GOX1196 [Gluconobacter oxydans 621H] gi|58002063|gb|AAW60957.1| Hypothetical protein GOX1196 [Gluconobacter oxydans 621H] Length = 148 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 +LQ L +AG++ +VRG +GG RL RP IT+ ++V+ E Sbjct: 47 VLQALSRAGLLSSVRGPKGGYRLGRPPRTITLNEIVRTVTE 87 >gi|146299648|ref|YP_001194239.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154066|gb|ABQ04920.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium johnsoniae UW101] Length = 137 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + Y ++ L+Y A ++ + +R +IA+ I + FL +IL L + V + +G+ Sbjct: 2 LSHKAKYALKALLYLAEQDENHISRTVEIADGANIPKKFLEQILLDLKRGRFVSSKQGKF 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + IT+ ++ + + + + C F DC C L L + Sbjct: 62 GGYYLIKSKNDITLAEIHRLFDGAIALLPCASLNFYEPCSDCKTESECSLRHGLMLIRDK 121 Query: 118 FFDVLTQYSIECLVRN 133 + +I LV+ Sbjct: 122 TLKAMEGITIASLVKK 137 >gi|144898449|emb|CAM75313.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 151 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +K+ + I ++ A H P + +I I +L + LQ LV++G++ VRG +G Sbjct: 5 SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRSGLLVGVRGPKG 64 Query: 63 GVRLCRPADQITILDVVK-----ATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKAL 115 G RL R +I++ +VV+ T E F V K+ P+ G LT + L Sbjct: 65 GYRLARERRRISVGEVVRVVRAMETAEDPFQDVPASDLGAKVIRPMWGD--LTEEIMDRL 122 Query: 116 NAF-FDVL 122 +A FD L Sbjct: 123 DAITFDDL 130 >gi|299821160|ref|ZP_07053048.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816825|gb|EFI84061.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 146 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 8/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + GI +L Y I D IA + + + +++ LVKAG++E+ G Sbjct: 1 MKYSHKLSDGIHILAYMCICKDSDLSSKAIAASIESNPSLVRRMMAQLVKAGLIESRPGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 V L +PA++I++L++ +A E+ + + C + G+ ++ LN +D Sbjct: 61 VAPV-LTKPAEEISLLEIYQAIEQDHRILHVDKNTNPRCIVGGN------IQHTLNGIYD 113 Query: 121 VLTQYSIECLVR 132 L Q ++E +R Sbjct: 114 QL-QANVEQEMR 124 >gi|284029052|ref|YP_003378983.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808345|gb|ADB30184.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM 17836] Length = 144 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 14/118 (11%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L +AG+VE+ RG G L R IT+LDV A E Sbjct: 32 QIAGSANTNPVVIRRLLGELREAGLVESRRGAGAGWSLTRDLASITLLDVYDAIEPGPL- 90 Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR---NRSSIKKIFNA 143 FA H+ + P G C + ++ AL+ + IEC VR ++++++ + A Sbjct: 91 ---FALHRAN-PDDG-CVVGHGIQPALHDVY-----AGIECTVRTELSKTTLEDVLQA 138 >gi|268317560|ref|YP_003291279.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] gi|262335094|gb|ACY48891.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] Length = 144 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 L +I+ L AG+ + +RG GGVRL RPA +IT+ ++++ + + C Sbjct: 41 LARIMLRLTAAGLTDALRGPGGGVRLARPAHEITLFEILQEIDGPEVLNRCI 92 >gi|331004367|ref|ZP_08327840.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411097|gb|EGG90516.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon 107 str. F0167] Length = 130 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +R++ A+ +++A+ + + +K+L L+K+ ++ ++RG Sbjct: 1 MLITREMDYAVRIIR--ALKEGTKVSATEVAKKEHLPQAITYKVLNSLLKSKLIGSMRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L T+ D+ A E + EC Sbjct: 59 NGGYYLKCDLSNTTLYDICTALGEDMSITECI 90 >gi|258509392|ref|YP_003172143.1| Rrf2 family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149319|emb|CAR88292.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus GG] gi|259650674|dbj|BAI42836.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 146 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A H DY + I +I+E I + K L K+GI+ + G GG+RL + IT+ + Sbjct: 23 AQHEDYLS-IQKISEMLNIPVPSIKKNSSTLKKSGILTSKTGLNGGLRLAKTPQTITVYE 81 Query: 78 VVKATEESFFVAECFASHK-------IDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 ++ A E + A F H+ ++ V S T+VL +A +A VL Q SI Sbjct: 82 ILTAIEGT---APLFKLHQEIDPAAFVNGERVTSWLAASTNVLNQAEDAMVQVLKQTSIA 138 Query: 129 CLVR 132 L Sbjct: 139 DLAE 142 >gi|325105184|ref|YP_004274838.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324974032|gb|ADY53016.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 136 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + I+ + + K + L KAG+V++ G+ GG L + AD I + D+ KA A Sbjct: 29 IAGSININSVLVRKEITELRKAGLVDSKEGKNGGFFLAKKADDINLGDLFKAVYPESIFA 88 Query: 90 ECFASHKIDCPL 101 S +CP+ Sbjct: 89 FAKNSPNPNCPI 100 >gi|307327145|ref|ZP_07606334.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306887226|gb|EFN18223.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 149 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 13 VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 +L+ A +D P +++A + + K+L PL + G+V V+GR GG L RP D Sbjct: 14 LLLAVAAEDDGAPLSSAELARMLNTNPSLVRKLLVPLAEEGLVVCVKGRTGGAMLGRPTD 73 Query: 72 QITILDVVK 80 +IT+ ++ + Sbjct: 74 RITLAEIYR 82 >gi|152987101|ref|YP_001346310.1| hypothetical protein PSPA7_0924 [Pseudomonas aeruginosa PA7] gi|150962259|gb|ABR84284.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 142 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH ++ P IA + + + + + L G V + +G RG Sbjct: 2 RNDTRLSRMLHVLIHMARHEGPATSEAIAHMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G RL +P IT+LD+ +A S A ++ +C Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98 >gi|296102479|ref|YP_003612625.1| putative transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056938|gb|ADF61676.1| putative transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 159 Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RP +QIT+ D+ Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPPEQITLRDI 79 >gi|260426151|ref|ZP_05780130.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] gi|260420643|gb|EEX13894.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] Length = 162 Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++T Y ++ LM A+ I ++++ + FL IL L KAG + RGR Sbjct: 2 ITQKTKYALKSLMTLGALEKGAALTIEEVSQRTGAPKRFLEHILLDLRKAGYLGARRGRA 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L R ++++ ++++ + C + DC +C L V + + Sbjct: 62 GGYFLIREPSKVSLGELLQQIDGPIAPLPCLSRRSYRRCDDCDDEEACQLRRVFGEIFWS 121 Query: 118 FFDVLTQYSIECLVRN 133 + ++ +++ L+R+ Sbjct: 122 YLLLIESLTLQDLLRD 137 >gi|254468307|ref|ZP_05081713.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium KB13] gi|207087117|gb|EDZ64400.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium KB13] Length = 159 Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P + ++E IS +L ++ L K IV ++RG Sbjct: 1 MKLTTKGRFAVSAILDIALNQKNGPVTLLAVSERQGISLSYLEQLFSKLRKGEIVSSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG R+ + IT+ ++ A +E +C Sbjct: 61 PGGGYRIKKAYTDITVRQIISAVDEKIDATQC 92 >gi|239926607|ref|ZP_04683560.1| hypothetical protein SghaA1_00120 [Streptomyces ghanaensis ATCC 14672] gi|291434916|ref|ZP_06574306.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291337811|gb|EFE64767.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 15/110 (13%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 QIA + + + + ++L L +AG+VE+ RG G L R +T+LDV +A E Sbjct: 31 EQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSLARELGTMTLLDVYEAVEPGPL 90 Query: 88 VA--------ECFASHKIDCPLVG-SCGLTSVLRKAL------NAFFDVL 122 A C H I + G G+ LR L N DVL Sbjct: 91 FAMHRTTPDQGCVVGHGIQPAMQGIYEGIEETLRHELARVTLENVLRDVL 140 >gi|296124240|ref|YP_003632018.1| hypothetical protein Plim_4008 [Planctomyces limnophilus DSM 3776] gi|296016580|gb|ADG69819.1| protein of unknown function UPF0074 [Planctomyces limnophilus DSM 3776] Length = 187 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 27/43 (62%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++L L KAG++ET RG GG RL RPA I + +V A ES Sbjct: 44 RLLTQLQKAGLIETRRGASGGSRLARPASAIHLGEVFDAVVES 86 >gi|315647519|ref|ZP_07900621.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315276958|gb|EFU40299.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 160 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56 MH+ + + L+ + N P++ I++ S + K+L+ LV A I+ + Sbjct: 1 MHMKTGVEQSVYALV---LLNMLPDKAVLPGEAISQQLGASATYFQKLLRKLVTADIITS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGS-CGLTSVLRK 113 V G +GG RL + + I + DV A E +S + + +D S C LT+++ + Sbjct: 58 VPGIKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLEKEESCCLLTNLMEE 117 Query: 114 ALNAFFDVLTQYSIECL 130 A +++ VL + +I L Sbjct: 118 AESSWKAVLKRETIASL 134 >gi|197117827|ref|YP_002138254.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197087187|gb|ACH38458.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 154 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 S IA+ IS L K+++ LV G+V+ +RG GG R ++ T+LD+++ E Sbjct: 28 SDIADKYGISSHHLAKVMRNLVHQGVVQAMRGVGGGYRFAGNVNRTTLLDIIQLFETLES 87 Query: 88 VAECFASHKIDCPLVGSC-GLTSVLRKALNAFFDVLT 123 + +K P+V +TS + A D +T Sbjct: 88 ELDLPHWNKAAEPVVSELHSVTSEIDTVTRAILDTVT 124 >gi|182416626|ref|ZP_02948040.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum 5521] gi|237668057|ref|ZP_04528041.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379518|gb|EDT77004.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum 5521] gi|237656405|gb|EEP53961.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 142 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ C + + I+E ISE +L +I L K GI++ +G Sbjct: 1 MKISTKGRYGLRALIDICVYSRNEMATVKSISERQNISERYLEQIFSSLRKGGIIKAKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 +GG L TI ++ E + + A Sbjct: 61 AQGGYFLTDEPKNFTIAKILSVLEGDLLLIDVEAED 96 >gi|239828144|ref|YP_002950768.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. WCH70] gi|239808437|gb|ACS25502.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70] Length = 136 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 5/129 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +D+ I V + R++ IA++ + L KIL L K I+ + G +GG Sbjct: 3 SDFSIAVHCVAYLAQKQSQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGF 62 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122 L + IT+ + K T E V +C S++ +CP+ + L V A F + L Sbjct: 63 SLNDSPEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRNLSNILIRVFHNAEEHFLNYL 121 Query: 123 TQYSIECLV 131 +I+ ++ Sbjct: 122 KGVTIKDII 130 >gi|227510984|ref|ZP_03941033.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085726|gb|EEI21038.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 159 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 20/121 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + +L+ A+ D+ P + I+ +S+ +L K+L +V G++ + G Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L +++T+LDV A E P++ S G+ S + FF Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGP-------------SPIIKSTGIASRI------FF 101 Query: 120 D 120 D Sbjct: 102 D 102 >gi|313676812|ref|YP_004054808.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa DSM 4126] gi|312943510|gb|ADR22700.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa DSM 4126] Length = 144 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR ++Y A + +R I IAE F KIL LVK IV ++ G Sbjct: 2 FSKSCEYGIRAVIYIATQSKKTDRVKIGDIAEKINSPVAFTAKILGLLVKNKIVSSITGP 61 Query: 61 RGGVRLCRP-ADQITILDVVKATEES-------FFVAECFASHKIDCPL 101 +GG + + D++ + D+V+ + + + EC AS CP+ Sbjct: 62 KGGFYIEQNRLDKVFLKDIVEVIDGNKIYKGCGLGLNECSASQ--PCPV 108 >gi|227893626|ref|ZP_04011431.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227864486|gb|EEJ71907.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 154 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ P IA + S + + K++ L KAG++ET G Sbjct: 1 MKVSTRFSDAIHLLAFIHIYKGQIPLSSENIAGSIETSPVMVRKLMSELRKAGLIETKHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 +L +P DQI++LDV A E+ Sbjct: 61 TPDP-KLAKPTDQISLLDVYLAVEKD 85 >gi|322383829|ref|ZP_08057576.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae B-3650] gi|321151645|gb|EFX44718.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae B-3650] Length = 132 Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 7/111 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A + + + + +I+ L KAG+V+ VR GG L + D+IT+LD+ KA + Sbjct: 20 VAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSGTGGAYLLKSLDEITLLDIYKAV-DVVEEG 77 Query: 90 ECFASHK---IDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRS 135 E F H+ +CP+ + L VL +A A VL +++ LV + S Sbjct: 78 ELFQMHEDPNPNCPVGANIQSVLMLVLGRAQEAMEQVLKDITMDELVTSLS 128 >gi|206969275|ref|ZP_03230230.1| rrf2 family protein [Bacillus cereus AH1134] gi|218235528|ref|YP_002368113.1| rrf2 family protein [Bacillus cereus B4264] gi|206736316|gb|EDZ53474.1| rrf2 family protein [Bacillus cereus AH1134] gi|218163485|gb|ACK63477.1| rrf2 family protein [Bacillus cereus B4264] gi|326941103|gb|AEA16999.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 137 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 D+I + + + T E +C S+ C + S +RK L A F Sbjct: 69 DEINLWHIYQITSEGALQPKCPESNN-------QCVVGSNMRKVLFAIF 110 >gi|229542592|ref|ZP_04431652.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] gi|229327012|gb|EEN92687.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] Length = 145 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 13/141 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R GI +L ++ D + +AE+ + + + KI+ L ++G++E G Sbjct: 1 MSISSRFAVGIHILALIEMNKDGVSSSEFLAESVNTNPVVIRKIMGMLKRSGLIEVHPG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 + G RL + IT+LDV KA A F+ H+ P C + ++ + F+ Sbjct: 60 KAGARLAKALSDITLLDVYKAVNVVQDKA-LFSIHRNPNP---KCPVGRNIQNTIEPIFE 115 Query: 121 --------VLTQYSIECLVRN 133 VL Q ++E +V++ Sbjct: 116 ASQMAMEKVLEQVTLEDVVKD 136 >gi|89900960|ref|YP_523431.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345697|gb|ABD69900.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 178 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + ++ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117 GG L R +IT+ +++ + +E C + K +C G+ +T L +LN Sbjct: 61 PGGGYTLARNPAEITVAEIITSVDEPIDATHC--AGKENCLGEGARCMTHDLWTSLNTKM 118 Query: 118 --FFDVLT 123 F D +T Sbjct: 119 VEFLDSVT 126 >gi|30021504|ref|NP_833135.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|228973382|ref|ZP_04133970.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|29897059|gb|AAP10336.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|228786362|gb|EEM34353.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 131 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 3 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 62 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 D+I + + + T E +C S+ C + S +RK L A F Sbjct: 63 DEINLWHIYQITSEGALQPKCPESNN-------QCVVGSNMRKVLFAIF 104 >gi|295103291|emb|CBL00835.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii SL3/3] Length = 143 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + + +++++E I F ++IL+ L +V RG Sbjct: 1 MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L D ++ D++ E + C Sbjct: 59 LGGCELSCDLDATSLYDLMGVVGERGILCACM 90 >gi|227523176|ref|ZP_03953225.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227089650|gb|EEI24962.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 159 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 20/121 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + +L+ A+ D+ P + I+ +S+ +L K+L +V G++ + G Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L +++T+LDV A E P++ S G+ S + FF Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGP-------------SPIIKSTGIASRI------FF 101 Query: 120 D 120 D Sbjct: 102 D 102 >gi|256787721|ref|ZP_05526152.1| hypothetical protein SlivT_24808 [Streptomyces lividans TK24] gi|289771609|ref|ZP_06530987.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289701808|gb|EFD69237.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 144 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L ++G+VE+ RG G L R +T+LDV +A E Sbjct: 32 QIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSLARELGSMTLLDVYEAVEPGPL- 90 Query: 89 AECFASHKI--DCPLVGSCGLTSVLRKALNAFFDV----LTQYSIECLVRN 133 FA H+ D V G+ V+R + L + ++E ++RN Sbjct: 91 ---FAMHRTTPDQGCVVGHGIQPVMRDVYEGIEETVRHELARVTLEDVLRN 138 >gi|170723498|ref|YP_001751186.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida W619] gi|169761501|gb|ACA74817.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida W619] Length = 150 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG GG +L R + Sbjct: 1 MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGMET 60 Query: 73 ITILDVVKATEESFFVAEC 91 I + V+ A ES C Sbjct: 61 IQVAQVIDAVNESVDATRC 79 >gi|81428601|ref|YP_395601.1| hypothetical protein LSA0990 [Lactobacillus sakei subsp. sakei 23K] gi|78610243|emb|CAI55292.1| Hypothetical protein LCA_0990 [Lactobacillus sakei subsp. sakei 23K] Length = 144 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 15/124 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ D IA + + + +++ LVKA ++E+ R Sbjct: 1 MKYSHKLSDAIHILAYVEIYQDGDLSSQSIAGSIESNASLVRRLMSLLVKADLLES---R 57 Query: 61 RGGV--RLCRPADQITILDVVKA--TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G + +L RPA+QI++LDV +A T++ ID C + + ++ ALN Sbjct: 58 PGTIAPKLARPAEQISVLDVYQALDTDQQLL--------HIDEKTNPQCLVGANIQSALN 109 Query: 117 AFFD 120 +D Sbjct: 110 DAYD 113 >gi|323341526|ref|ZP_08081765.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC 25644] gi|323091047|gb|EFZ33680.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC 25644] Length = 186 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK + ++ A N P I S+ +L KI++ LV G++ + G Sbjct: 9 MQLTKGFEQAACIMALLATQNRGIPLSSHVIHTRVSSSQTYLKKIMRKLVVGGLITSASG 68 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 GG L R + IT+L +V A E Sbjct: 69 NSGGFSLAREPEDITLLQIVSAVE 92 >gi|293394859|ref|ZP_06639149.1| iron-sulfur cluster assembly transcription factor IscR [Serratia odorifera DSM 4582] gi|291422610|gb|EFE95849.1| iron-sulfur cluster assembly transcription factor IscR [Serratia odorifera DSM 4582] Length = 151 Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG GG L + A + Sbjct: 1 MLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKDAAE 60 Query: 73 ITILDVVKATEESFFVAEC 91 I + V+ A +ES C Sbjct: 61 IAVGAVITAVDESVDATRC 79 >gi|241666997|ref|YP_002985081.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862454|gb|ACS60119.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 151 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH D + IA+ + + + + + L + G V + +G G Sbjct: 2 RNDSRLSRMLHVLIHMDKHQHSATSDMIAKMLNTNPVVVRRTMAGLREKGYVRSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G L RP +IT+LDV +A E A A + +C Sbjct: 62 GWTLVRPLSEITLLDVYRAIGEPHLFAIGPADDQPEC 98 >gi|23006957|ref|ZP_00049037.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 73 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 M LT+ TDY +R L+Y + + I++IA A ISE L K++ L +G Sbjct: 1 MRLTRYTDYALRTLIYVGLREPRQSSIAEIAAAYGISESHLTKVVHQLGGSG 52 >gi|288961953|ref|YP_003452263.1| transcriptional regulator [Azospirillum sp. B510] gi|288914233|dbj|BAI75719.1| transcriptional regulator [Azospirillum sp. B510] Length = 157 Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+K TDY I VL A H + ++ +A+ + + K+++ + AG+ + RG G Sbjct: 4 LSKLTDYAIVVLSEMARHVGTVHTVAHLADRTGVPAPTVAKLMKAMTPAGLTTSQRGAAG 63 Query: 63 GVRLCRP 69 G L RP Sbjct: 64 GYALSRP 70 >gi|295135463|ref|YP_003586139.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda SM-A87] gi|294983478|gb|ADF53943.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda SM-A87] Length = 135 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L + A + P + S+IA++ IS FL IL L K+G + + +G+ Sbjct: 2 LSKKTKYGIKALTFIARQPERNPVQTSEIAKSENISLKFLESILLILRKSGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + + I + +++ E + C + + DCP +C + ++ + ++ Sbjct: 62 GGYYLIKEPEDIKMTAIIRVLEGPIAMVPCVSLNYYEKCEDCPDEQTCAVHKLMIQVRDS 121 Query: 118 FFDVLTQYSI 127 +VL + ++ Sbjct: 122 TLNVLGENTL 131 >gi|332885400|gb|EGK05649.1| hypothetical protein HMPREF9456_02451 [Dysgonomonas mossii DSM 22836] Length = 136 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 35/72 (48%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A + I+ + + K L L K IV + G+ GG L RPA++I I DV K + Sbjct: 29 LAGSMNINPVLVRKELSNLRKHNIVISKEGKNGGCMLARPANEIFISDVYKIVSTHSILG 88 Query: 90 ECFASHKIDCPL 101 AS CP+ Sbjct: 89 NELASPNPKCPV 100 >gi|153814006|ref|ZP_01966674.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756] gi|145848402|gb|EDK25320.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756] Length = 86 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 K+G++E RG +GG +L + + T+ DVV A E F V EC Sbjct: 3 KSGLIEIRRGPKGGYQLAKDIGEFTLYDVVTAIEPDFAVMEC 44 >gi|329938564|ref|ZP_08287989.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329302537|gb|EGG46428.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 147 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L +AG+VE+ RG G L R IT+LDV +A E Sbjct: 32 QIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSLARELGSITLLDVYEAVEPGPL- 90 Query: 89 AECFASHK 96 FA H+ Sbjct: 91 ---FAMHR 95 >gi|313109618|ref|ZP_07795565.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882067|gb|EFQ40661.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 142 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH ++ P I + + + + + + L G V + +G RG Sbjct: 2 RNDTRLSRMLHVLIHMARHEGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G RL +P IT+LD+ +A S A ++ +C Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98 >gi|298368426|ref|ZP_06979744.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sp. oral taxon 014 str. F0314] gi|298282429|gb|EFI23916.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sp. oral taxon 014 str. F0314] Length = 148 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +A +VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAQLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L PA +I I ++ A E+ C + K +C C L L K +N Sbjct: 61 PGGGYILAAPASEINIAQIIAAAEDRLDATRCGS--KANCHHGAPCLTHDLWENLNKTIN 118 Query: 117 AFFDVLTQYSI 127 + +T SI Sbjct: 119 DYLSSVTLQSI 129 >gi|78223304|ref|YP_385051.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194559|gb|ABB32326.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 143 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 47/102 (46%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + + + ++ A + +IA +S L KI++ LV G+V+ VRG Sbjct: 1 MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102 GG R + T+LD+++ E + +D P++ Sbjct: 61 GGGYRFSGNIQRTTLLDIIQMFENLESELDVPHGSPLDVPIL 102 >gi|296126632|ref|YP_003633884.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018448|gb|ADG71685.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii DSM 12563] Length = 149 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + IAE +S L K+LQ LVKAG + + +G GG ++ + + L++ + E Sbjct: 26 LKDIAERFDVSSNHLSKVLQALVKAGYLTSSKGPAGGFKIAEGKENTSFLEIYETIEGKN 85 Query: 87 FVAECFASHKID 98 + C K D Sbjct: 86 WQRSCLFHSKCD 97 >gi|85703168|ref|ZP_01034272.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. 217] gi|85672096|gb|EAQ26953.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. 217] Length = 153 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 IS +L ++ L +A +V +VRG GG RL RPA +I + D++ A +E+ Sbjct: 37 ISLPYLEQLFVKLRRAELVTSVRGPGGGYRLMRPASEIRVSDILAAVDETI 87 >gi|304408323|ref|ZP_07389971.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304342792|gb|EFM08638.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 149 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 15/104 (14%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KID 98 FL +I+ LV+AG+VE GR GG L + IT+ DV A + ++C + Sbjct: 46 FLRRIMVHLVQAGMVEAKEGRDGGYFLRKSPADITLADVYMAVK-----SDCGTEQASVA 100 Query: 99 CPLVGSCG---------LTSVLRKALNAFFDVLTQYSIECLVRN 133 G CG L S++ +A D L Q++++ ++R Sbjct: 101 ADDEGGCGAAGQQLDSVLESIMGQAEQHTIDYLRQFTVDDVMRQ 144 >gi|126728568|ref|ZP_01744383.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sagittula stellata E-37] gi|126710498|gb|EBA09549.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sagittula stellata E-37] Length = 154 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ ++ D + +++ +S +L ++ L +AG+VE+VRG Sbjct: 1 MKLSTKGRYAMVALVDISLQGCDDLVTLGDVSKRQDLSLPYLEQLFVKLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL + I ++D++ A +E+ Sbjct: 61 PGGGYRLAKSPSDIRVVDILAAVDET 86 >gi|153011671|ref|YP_001372885.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563559|gb|ABS17056.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi ATCC 49188] Length = 154 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ++ IA IS+ FL IL L GI+ + +G GG L +PA +ITI VV+ + Sbjct: 27 VADIATQNNISKKFLDAILLELRNDGILRSKKGPGGGYSLSKPASEITIGQVVRVLDGPL 86 Query: 87 FVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 C + DC +C + + A VL + ++E RN Sbjct: 87 APIRCASRTAYEPCNDCVDHRACQVRRSMLLVREAIAGVLDRMTLEQFTRN 137 >gi|325201913|gb|ADY97367.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M01-240149] gi|325208335|gb|ADZ03787.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis NZ-05/33] Length = 148 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L PA +I I ++ A E+ +C + K +C C L L K +N Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118 Query: 117 AFFDVLTQYSI 127 + +T SI Sbjct: 119 DYLGSVTLQSI 129 >gi|15599364|ref|NP_252858.1| hypothetical protein PA4169 [Pseudomonas aeruginosa PAO1] gi|218889502|ref|YP_002438366.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254237049|ref|ZP_04930372.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242853|ref|ZP_04936175.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|9950377|gb|AAG07556.1|AE004833_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126168980|gb|EAZ54491.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196231|gb|EAZ60294.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218769725|emb|CAW25485.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 142 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH ++ P I + + + + + + L G V + +G RG Sbjct: 2 RNDTRLSRMLHVLIHMARHEGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G RL +P IT+LD+ +A S A ++ +C Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98 >gi|315651167|ref|ZP_07904198.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986] gi|315486565|gb|EFU76916.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986] Length = 130 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RV+ A+ + ++IA+ + + +K+L L+K+ +V ++RG Sbjct: 1 MLITREMDYAVRVVR--ALKGNTKISATEIAKKEHLPQAITYKVLNSLLKSKLVGSMRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118 GG L T+ D+ A E + EC DC G C L + N+ Sbjct: 59 NGGYYLKCDLTCTTLYDICVALGEDMSITECIRDG-YDCVNNRCGECTLNREFNRIQNSL 117 >gi|320332910|ref|YP_004169621.1| BadM/Rrf2 family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754199|gb|ADV65956.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus maricopensis DSM 21211] Length = 138 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL ++H D+ IA + + + + I+ L +AG++ T RG G V L R Sbjct: 8 AVHVLALISMHPDHARTSEAIAGSVGTNPVVVRNIIGLLRRAGLLRTQRGVAGAV-LTRT 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 D +T+LDV +A + CP VGS Sbjct: 67 PDAVTLLDVYRAVNPPEHLFRLHEQPNPQCP-VGS 100 >gi|161870250|ref|YP_001599421.1| DNA-binding protein [Neisseria meningitidis 053442] gi|161595803|gb|ABX73463.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis 053442] Length = 164 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 17 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 76 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L PA +I I ++ A E+ +C + K +C C L L K +N Sbjct: 77 PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 134 Query: 117 AFFDVLTQYSI 127 + +T SI Sbjct: 135 DYLGSVTLQSI 145 >gi|15677241|ref|NP_274394.1| hypothetical protein NMB1378 [Neisseria meningitidis MC58] gi|121635084|ref|YP_975329.1| DNA-binding protein [Neisseria meningitidis FAM18] gi|218768395|ref|YP_002342907.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis Z2491] gi|254805173|ref|YP_003083394.1| putative transcription factor [Neisseria meningitidis alpha14] gi|304387294|ref|ZP_07369487.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria meningitidis ATCC 13091] gi|313668524|ref|YP_004048808.1| transcriptional regulator [Neisseria lactamica ST-640] gi|60416285|sp|P0A0Y9|Y1593_NEIMA RecName: Full=Putative HTH-type transcriptional regulator NMA1593 gi|60416286|sp|P0A0Z0|Y1378_NEIMB RecName: Full=Putative HTH-type transcriptional regulator NMB1378 gi|7413461|gb|AAF62328.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|120866790|emb|CAM10543.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis FAM18] gi|121052403|emb|CAM08736.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis Z2491] gi|254668715|emb|CBA06505.1| putative transcription factor [Neisseria meningitidis alpha14] gi|254669828|emb|CBA04202.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|261392349|emb|CAX49885.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor IscR [Neisseria meningitidis 8013] gi|304338677|gb|EFM04794.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria meningitidis ATCC 13091] gi|308389496|gb|ADO31816.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis alpha710] gi|313005986|emb|CBN87445.1| putative transcriptional regulator [Neisseria lactamica 020-06] gi|316984196|gb|EFV63174.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis H44/76] gi|319410641|emb|CBY91011.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor IscR [Neisseria meningitidis WUE 2594] gi|325128433|gb|EGC51314.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis N1568] gi|325132429|gb|EGC55122.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M6190] gi|325134386|gb|EGC57031.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M13399] gi|325136465|gb|EGC59071.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M0579] gi|325138418|gb|EGC60986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis ES14902] gi|325140404|gb|EGC62925.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis CU385] gi|325144688|gb|EGC66986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M01-240013] gi|325198522|gb|ADY93978.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis G2136] gi|325200003|gb|ADY95458.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis H44/76] gi|325204371|gb|ADY99824.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M01-240355] gi|325205856|gb|ADZ01309.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M04-240196] Length = 148 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L PA +I I ++ A E+ +C + K +C C L L K +N Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118 Query: 117 AFFDVLTQYSI 127 + +T SI Sbjct: 119 DYLGSVTLQSI 129 >gi|328543025|ref|YP_004303134.1| HTH-type transcriptional regulator rrf2-like protein [polymorphum gilvum SL003B-26A1] gi|326412771|gb|ADZ69834.1| Putative HTH-type transcriptional regulator rrf2-like protein [Polymorphum gilvum SL003B-26A1] Length = 142 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 RI ++AE + FL IL L +AG++ + RGR+GG L + ++I ++++ + Sbjct: 15 RIEEVAELSGAPKRFLEHILLDLKRAGLIGSRRGRKGGYELIKEPRHVSIAEILRLIDGP 74 Query: 86 FFVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 C + DC SC + +V +A+ ++ ++ L + +++ Sbjct: 75 IAPLPCLSRRAYRPCEDCKDEKSCRVRAVFGGFYSAYILMIESLTLADLQQESQPLER 132 >gi|315641499|ref|ZP_07896571.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315482787|gb|EFU73311.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 157 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK + G+ V+ M P + I + S + KI++ LV +G+ +V G Sbjct: 1 MQLTKAFEQGVCVMAMLTTQMPSIPVASATIHQRLGTSPTYTQKIVRKLVVSGLATSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 + GG L R + I+ LDVV+A E Sbjct: 61 QGGGFCLARASKDISCLDVVEAIE 84 >gi|237734275|ref|ZP_04564756.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382505|gb|EEO32596.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 131 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR+++Y AI D +++E I + +FKI + L I+ G Sbjct: 1 MQLKVSTDYAIRIVLYIAIKKDIVQS-KELSETLGIPQSTVFKIGKKLSDNEIISIATGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 +GG +L + I+I ++ E + + C K Sbjct: 60 QGGFKLKKQPKDISIFSIIDIFEPTIRINSCLEEDK 95 >gi|329114662|ref|ZP_08243421.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum DM001] gi|326696142|gb|EGE47824.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum DM001] Length = 160 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L++ DY I +L+ + +A + E + K+L+ L G V + RG Sbjct: 8 LKLSRLADYAIVILVKLGEQEGVVTSPT-LAAITGVPEPTVAKVLKVLSAHGFVLSQRGA 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL R I++ V+ A + + C + D + SCGL A Sbjct: 67 KGGYRLARHLADISVASVITAVDGKIALTACVDGGECDTGV--SCGLCGSWDTINQAIRT 124 Query: 121 VLTQYSIECLVRNRSS 136 L S+E + R+++S Sbjct: 125 TLEGISLESM-RSKAS 139 >gi|160942852|ref|ZP_02090092.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii M21/2] gi|158445904|gb|EDP22907.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii M21/2] Length = 146 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + + +++++E I F ++IL+ L +V RG Sbjct: 4 MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L D ++ D++ E + C Sbjct: 62 LGGCALSCDLDATSLYDLMGVVGERGILCACM 93 >gi|270261370|ref|ZP_06189643.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044854|gb|EFA17945.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 179 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL K GI+ + GR G + L RP ++IT+ D+ Sbjct: 59 FIRKLMVPLTKNGIIVSTLGRNGSIHLGRPVEEITLRDI 97 >gi|251799818|ref|YP_003014549.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247547444|gb|ACT04463.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 141 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 11/110 (10%) Query: 24 PNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 P R++ IA+ + K++ L K+G V+T G GG RL D +T+ DV + Sbjct: 19 PERMASSEMIADNVGTHSARVRKVMSGLRKSGFVDTREGAGGGYRLTIDPDVVTLGDVYR 78 Query: 81 A-TEESFFVAECFASHKIDCPLVGSC------GLTSVLRKALNAFFDVLT 123 + SF + C +DC +VGS G+ K L +F +T Sbjct: 79 VMAQGSFIPSWCSGDPGMDC-VVGSNMNQVMFGIFCTAEKQLEGYFSGIT 127 >gi|330807635|ref|YP_004352097.1| transcription factor, Rrf2 family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375743|gb|AEA67093.1| putative Transcription factor, Rrf2 family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 150 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG GG +L R Sbjct: 1 MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRGPGGGYQLSRDMQG 60 Query: 73 ITILDVVKATEESFFVAEC 91 I + V+ A ES +C Sbjct: 61 IQVAQVIDAVNESVDATKC 79 >gi|325266631|ref|ZP_08133308.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella denitrificans ATCC 33394] gi|324982074|gb|EGC17709.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella denitrificans ATCC 33394] Length = 148 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLALNAQNNAVKLNSISERQQISLSYLEQLFSKLRRAGLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116 GG L R A +I I ++ A E+ C K +C C L L +N Sbjct: 61 PGGGYILGRDAGEINIAQIIAAAEDELDATLCKG--KANCQSGAPCLTHNLWENLNHTIN 118 Query: 117 AFFDVLT 123 A+ +T Sbjct: 119 AYLSSVT 125 >gi|296124045|ref|YP_003631823.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM 3776] gi|296016385|gb|ADG69624.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus DSM 3776] Length = 147 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++K +Y +R + A + ++A + +L +LQ L +AGIV++ G G Sbjct: 2 ISKTAEYALRTVACLASAREGIVLADELATRTQVPRRYLNTVLQDLGRAGIVKSKSGPGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101 G L +++ILDV+ A + +C SH CPL Sbjct: 62 GHSLLVDPKELSILDVINAVSPLERIRQCPLGLPSHTELCPL 103 >gi|126726563|ref|ZP_01742404.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] gi|126704426|gb|EBA03518.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] Length = 180 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 +S I+ IS +L ++ L +AG+VE+VRG GG RL + +I + D++ A +E+ Sbjct: 55 LSDISRRQDISLPYLEQLFVKLRRAGLVESVRGPGGGYRLAKAPAEIRVSDILGAVDET 113 >gi|90406923|ref|ZP_01215114.1| Rrf2 family protein [Psychromonas sp. CNPT3] gi|90311965|gb|EAS40059.1| Rrf2 family protein [Psychromonas sp. CNPT3] Length = 158 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT + Y + ++ A+ HN P ++ I+ IS +L ++ L K +V +VR Sbjct: 1 MKLTSKGRYAVTAMLDVALKEHNG-PVPLADISMRQGISLSYLEQLFSKLRKNELVCSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL--- 115 G GG +L + +I++ ++ A ES V +C S K C G LT L + L Sbjct: 60 GPGGGYKLGKLRSEISVAMIIAAVNESVDVRKC--SGKEGCQEHGVKCLTHSLWEQLSLR 117 Query: 116 -NAFFDVLT 123 + F D +T Sbjct: 118 ISTFLDGIT 126 >gi|226356686|ref|YP_002786426.1| Rrf2 family transcriptional regulator [Deinococcus deserti VCD115] gi|226318676|gb|ACO46672.1| putative transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115] Length = 155 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +I++A + +L +IL L G+V++ +G GG L R I++ +VV+A + Sbjct: 30 EISDATGVHRPYLVRILAALTAKGVVKSKKGIGGGYALARKPQLISLCEVVRAIDGPVAP 89 Query: 89 AECFA-SHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131 C + + C C S+ R+ +A VL ++S+ LV Sbjct: 90 LSCISLNWHEPCVEEDRCHARASIYRRMRDAMLGVLQEFSVADLV 134 >gi|294677420|ref|YP_003578035.1| FeS assembly cluster transcription factor IscR [Rhodobacter capsulatus SB 1003] gi|294476240|gb|ADE85628.1| FeS assembly cluster transcription factor IscR [Rhodobacter capsulatus SB 1003] Length = 152 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L+ A P +++ +AE IS +L ++ L +AG+V +V Sbjct: 1 MKLSTKGRYAMVALVDLATVG--PGQMTSLAEISKRQDISLPYLEQLFVRLRRAGLVASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L + +I I +V +A +E+ A + L + L ++L+A Sbjct: 59 RGPGGGYKLAKTPAEIRISEVFEAVDETVSALHVGAGASGGISGSRAQSLANRLWESLSA 118 Query: 118 -FFDVLTQYSIECLVRN 133 F L Q ++E +V+N Sbjct: 119 QVFVFLHQTTLEDVVKN 135 >gi|163736408|ref|ZP_02143827.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] gi|163741057|ref|ZP_02148449.1| iron-sulfur cluster assembly transcription factor IscR, putative [Phaeobacter gallaeciensis 2.10] gi|161385410|gb|EDQ09787.1| iron-sulfur cluster assembly transcription factor IscR, putative [Phaeobacter gallaeciensis 2.10] gi|161390278|gb|EDQ14628.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] Length = 152 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + I++ IS +L ++ L ++G+V +VRG GG RL P I ++DV+ A +E+ Sbjct: 28 LGDISKRQDISLPYLEQLFVKLRRSGLVVSVRGPGGGYRLAHPPSDIRVVDVLSAVDET 86 >gi|294053610|ref|YP_003547268.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] gi|293612943|gb|ADE53098.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] Length = 150 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%) Query: 5 KRTDYGIRVLMYCA-IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 K I + Y A +++ +IS +IAE + + + K+L L +AG+V+ RG Sbjct: 6 KTAQNAISAMSYLAKVYDGGETKISSKEIAEERQLPQTLVAKLLVTLSQAGLVDGARGPN 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCPLVG-----SCGLTSVL 111 GG L + I + D+V+ E+ A C + + CPL L S L Sbjct: 66 GGYWLAKAPKDIVLYDIVRLFEKGGSGAMCPFGPDWCGNGEPCPLHDQLVELDGNLMSFL 125 Query: 112 RKALNAFFDVLTQ 124 + A F++ +Q Sbjct: 126 ERTSLAVFEIGSQ 138 >gi|313497210|gb|ADR58576.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 153 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG GG +L R + Sbjct: 3 AMLDLALHAKNGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGME 62 Query: 72 QITILDVVKATEESFFVAEC 91 I + V+ A ES C Sbjct: 63 TIQVAQVIDAVNESVDATRC 82 >gi|312870588|ref|ZP_07730703.1| transcriptional regulator, Rrf2 family [Lactobacillus oris PB013-T2-3] gi|311093903|gb|EFQ52232.1| transcriptional regulator, Rrf2 family [Lactobacillus oris PB013-T2-3] Length = 154 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ P IA + S + + +++ L K G++ETV G Sbjct: 1 MRVSTRLSDSIHILAFLQIYRGKVPLTSENIAGSVETSPVVVRRLMSALRKGGLIETVLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 RL RPAD+I++ D+ A E Sbjct: 61 F-ADPRLARPADEISLYDIYLAVE 83 >gi|313115924|ref|ZP_07801351.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621688|gb|EFQ05216.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 146 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + + +++++E I F ++IL+ L +V RG Sbjct: 4 MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L D ++ D++ E + C Sbjct: 62 LGGCELSCDLDATSLYDLMVVVGERGILCACM 93 >gi|291562340|emb|CBL41156.1| Predicted transcriptional regulator [butyrate-producing bacterium SS3/4] Length = 143 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + + +++++E I F ++IL+ L +V RG Sbjct: 1 MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 GG L D ++ D++ E + C Sbjct: 59 LGGCALSCDLDATSLYDLMGVVGERGILCACM 90 >gi|119385536|ref|YP_916592.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119375303|gb|ABL70896.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 159 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 7/136 (5%) Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++++T Y I+ LM A I +IA+ + FL I+ L AG V + RG Sbjct: 13 ISQKTKYAIKALMALADEVAAGGNALTIEEIAQRSGAPKRFLEHIMLELRNAGYVGSRRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + +I+I ++++ + C + DC +C L + + Sbjct: 73 RAGGYVLIKRPKEISIGELLRQVDGPIAPLPCLSRRSYQRCEDCTDEATCRLRRMFGQVF 132 Query: 116 NAFFDVLTQYSIECLV 131 ++ ++ ++E LV Sbjct: 133 WSYLLLIESLTLEDLV 148 >gi|322835180|ref|YP_004215206.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602] gi|321170381|gb|ADW76079.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602] Length = 161 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 27/39 (69%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPA++IT+ D+ Sbjct: 41 FIRKLMVPLTQHGIIVSTLGRTGSITLGRPAEEITLRDI 79 >gi|312131867|ref|YP_003999207.1| transcriptional regulator, badm/rrf2 family [Leadbetterella byssophila DSM 17132] gi|311908413|gb|ADQ18854.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella byssophila DSM 17132] Length = 136 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + CI+ + + + L L +AG++ + +G+ GG +L + ++I++ +V A + S + Sbjct: 29 IAGSICINPVMVRRELSSLNEAGLIYSRKGKDGGSKLSKKPEEISLGEVYLAVKNSEILG 88 Query: 90 ECFASHKIDCPLVGS 104 + +CP VGS Sbjct: 89 KKNKDTNSNCP-VGS 102 >gi|146317858|ref|YP_001197570.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145688664|gb|ABP89170.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] Length = 105 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 35 CISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 +SE+F K L +AG+VE RG GG RL + DQIT+L V +A E + FA Sbjct: 32 SLSEIFCPK----LKEAGLVEVARGI-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAF 86 Query: 95 HKIDCP 100 H+ P Sbjct: 87 HEQPNP 92 >gi|89096880|ref|ZP_01169771.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088260|gb|EAR67370.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 141 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 25/39 (64%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 FL KIL+ LVK G+V+ GR GG L +P + I + DV Sbjct: 46 FLRKILRNLVKEGLVQAKEGRDGGYFLAKPPEDIRLSDV 84 >gi|153812075|ref|ZP_01964743.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174] gi|149831730|gb|EDM86816.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174] Length = 149 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D + V++ AI+ + + IAE+ + F+ +++ L KA ++ +V G Sbjct: 5 TKLSD-TVHVMVLIAINQEKSLSSASIAESVHTNPGFVRQLMLKLKKAELMTSVAGH-AR 62 Query: 64 VRLCRPADQITILDVVKATE 83 L +PA+QIT+LD+ KA E Sbjct: 63 PSLSKPAEQITLLDIYKAVE 82 >gi|107103686|ref|ZP_01367604.1| hypothetical protein PaerPA_01004757 [Pseudomonas aeruginosa PACS2] Length = 133 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A H + P I + + + + + + L G V + +G RGG RL +P Sbjct: 2 LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99 IT+LD+ +A S A ++ +C Sbjct: 61 ADITLLDIHQALGASSIFAIGLSTDHPEC 89 >gi|46201015|ref|ZP_00207932.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + + + + ++L L KAG+V + RG GG L ++I++LD+ +A +E A Sbjct: 30 IAGSVNTNPVVVRRLLSALAKAGLVHSTRGSAGGSVLALGPERISLLDIHRAVDEEEEPA 89 Query: 90 ECFASHKIDCPL 101 DCP+ Sbjct: 90 LHNQPPNPDCPV 101 >gi|315659054|ref|ZP_07911921.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315496178|gb|EFU84506.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 140 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 38/69 (55%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + A H D +++AE C++ + L +++ L + ++T+RG+ GG + + Sbjct: 8 AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 67 Query: 70 ADQITILDV 78 IT+ ++ Sbjct: 68 TAAITLAEL 76 >gi|317047988|ref|YP_004115636.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b] gi|316949605|gb|ADU69080.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] Length = 161 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPA +IT+ D+ Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPASEITLRDI 79 >gi|30795085|ref|NP_851535.1| hypothetical protein pSLA2-L_p113 [Streptomyces rochei] gi|30698458|dbj|BAC76571.1| hypothetical protein [Streptomyces rochei] Length = 143 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A + + + + ++L + AG+V + RG G L RP + IT+ DV +A E S A Sbjct: 33 VAGSVNTNPVVIRRLLGRMRDAGLVHSRRGADAGWVLARPLEDITLRDVYEAIEPSPLFA 92 Query: 90 ECFASHKIDCPLVGSCGLTSVLR 112 + + CP VGS G+ +R Sbjct: 93 MHRSDPNLGCP-VGS-GIQPAMR 113 >gi|37520366|ref|NP_923743.1| hypothetical protein glr0797 [Gloeobacter violaceus PCC 7421] gi|35211359|dbj|BAC88738.1| glr0797 [Gloeobacter violaceus PCC 7421] Length = 140 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +I +IA+ I + +L ++L L + G+V++ RG RGG L R I +L++V+ E Sbjct: 26 PMQIKEIAQCQSIPDRYLEQLLADLRRHGLVKSQRGARGGYLLAREPFAIHLLEIVQCIE 85 >gi|126736518|ref|ZP_01752259.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] gi|126714056|gb|EBA10926.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] Length = 124 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + IA+ + + + ++L L +AG++ + +G GG RL R A IT+ DV A +E Sbjct: 12 ADIADHAGTNPVVVRRVLGKLREAGLLTSEKGHAGGWRLARAAQDITLADVYLALDERLV 71 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 +S D P +C + L+ + A + + + IE L + Sbjct: 72 A----SSPNDDVP---TCVVEHRLQNKITAVMEEIERSLIERLSK 109 >gi|325102879|ref|YP_004272533.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324971727|gb|ADY50711.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 145 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 7/143 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R + + A + I +IA+ E FL KILQ L + GIV + +G Sbjct: 4 FSKTCEYAMRAVFFIAYKTSEDKKVGIKEIAQGINSPEHFLAKILQDLSRKGIVLSAKGP 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + + ++V+A + C C C + +K N Sbjct: 64 NGGFYMDSITLKQPLSNIVEAIDGDKIFVGCGLGLNY-CSESNPCPIHHEFKKIRNDIIK 122 Query: 121 VLTQYSI----ECLVRNRSSIKK 139 +L +I E L+ S++KK Sbjct: 123 MLKNTTIEDFNEDLILGNSTLKK 145 >gi|294499976|ref|YP_003563676.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294349913|gb|ADE70242.1| transcriptional regulator, putative [Bacillus megaterium QM B1551] Length = 159 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 7/138 (5%) Query: 1 MHL---TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 MH+ +++ Y I +L + P + I+ S + K+L+ LV A ++ +V Sbjct: 1 MHMKTGVEQSVYAILLLTFLPEKAVLPGDV--ISTQLGGSPTYFQKLLRKLVSADLLASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G +GG RL + ++I I DV A E +S + + ++ C L+ ++ +A Sbjct: 59 PGSKGGFRLKKTPEEIRIYDVYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118 Query: 116 NAFFDVLTQYSIECLVRN 133 +++ +L + +I L Sbjct: 119 SSWQSILKRQTIATLTNE 136 >gi|289551542|ref|YP_003472446.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis HKU09-01] gi|289181073|gb|ADC88318.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis HKU09-01] Length = 141 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 38/69 (55%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + A H D +++AE C++ + L +++ L + ++T+RG+ GG + + Sbjct: 9 AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 68 Query: 70 ADQITILDV 78 IT+ ++ Sbjct: 69 TAAITLAEL 77 >gi|226195510|ref|ZP_03791098.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pakistan 9] gi|225932470|gb|EEH28469.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pakistan 9] Length = 154 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ++ I++ IS +L ++ L + IVE+VRG GG L R A +T+ D++ A +E Sbjct: 3 LAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTVADIIIAVDEPL 62 Query: 87 FVAEC 91 +C Sbjct: 63 DATQC 67 >gi|253580214|ref|ZP_04857481.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848733|gb|EES76696.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 145 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D I +L++ A+ ++ ++IAE+ + ++ +++ L AGIV +G Sbjct: 5 TKLSD-TIHILIFIALGDEEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG-HAN 62 Query: 64 VRLCRPADQITILDVVKATE 83 L +PAD+I + D+ +A E Sbjct: 63 AALAKPADKINMYDIYRAVE 82 >gi|56964902|ref|YP_176633.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911145|dbj|BAD65672.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 169 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFA 93 +S +L KI++ LV + ++ +V G GG L + + IT+LD+++A E FF E Sbjct: 37 VSPSYLKKIMRKLVISKLITSVPGNSGGFALAKSPEAITMLDILEAIEGTSPFFQTEGLI 96 Query: 94 SH---KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 + +I GS L ++ +A + L + ++ Sbjct: 97 QYVFPEIPAAEAGSKRLEAIFLEAQEQYMASLAKTTL 133 >gi|84686886|ref|ZP_01014770.1| iron-sulfur cluster assembly transcription factor IscR, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665083|gb|EAQ11563.1| iron-sulfur cluster assembly transcription factor IscR, putative [Rhodobacterales bacterium HTCC2654] Length = 143 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 1/108 (0%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 ++ ++E IS +L ++ L +A +VE+VRG GG L RP+ +I + +++ A +E+ Sbjct: 18 LTDLSERQKISLPYLEQLFVKLRRAELVESVRGPGGGYMLARPSSEIRVAEILAAVDETV 77 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-LTQYSIECLVRN 133 A + +T+ L + L+A V L Q + +V N Sbjct: 78 SAMHTGAGASGGKSGTRAQSMTNRLWEGLSAHVYVFLHQTRLSDVVHN 125 >gi|115360049|ref|YP_777187.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285337|gb|ABI90853.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria AMMD] Length = 146 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA + + + ++L L +G V++ +G G Sbjct: 2 RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDSGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G L D IT+LDV +A E ++ + +C Sbjct: 62 GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPEC 98 >gi|329923736|ref|ZP_08279131.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] gi|328941102|gb|EGG37404.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] Length = 120 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 + KI+ L + GIV V G GG L +PA QIT L+V++ E + EC Sbjct: 1 MSKIMSKLRQDGIVRAVPGVNGGYELAKPARQITFLEVIQVIEGRQQLFEC 51 >gi|153814508|ref|ZP_01967176.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756] gi|145848002|gb|EDK24920.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756] Length = 95 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCG 106 L KAGIV +VRG GG L + + I++ DV++A E S +C C + SC Sbjct: 2 LKKAGIVRSVRGAGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSCV 61 Query: 107 LTSVLRKALNAFFDVLTQYSIECLVR 132 V +K ++ + + ++ LV+ Sbjct: 62 TKYVWKKINDSINQTVDEIKLDQLVK 87 >gi|89096273|ref|ZP_01169166.1| rrf2 family protein [Bacillus sp. NRRL B-14911] gi|89089127|gb|EAR68235.1| rrf2 family protein [Bacillus sp. NRRL B-14911] Length = 138 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 42/86 (48%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + I+++ + + + K+L L + G +++ G GG R Sbjct: 9 IHSLAYLALQLDRMSTSEAISKSAGVHPVRIRKVLSLLKRNGFIKSKEGTGGGFIFAREL 68 Query: 71 DQITILDVVKATEESFFVAECFASHK 96 D++++ D+ K T E +C S++ Sbjct: 69 DEVSLWDIYKITSEGALQPKCPESNE 94 >gi|300932585|ref|ZP_07147841.1| transcriptional regulator, BadM/Rrf2 family protein [Corynebacterium resistens DSM 45100] Length = 133 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 S IA + + K++ L + G+V + RGR GG+ L A + +++ E Sbjct: 23 SSIAHNIGAPQTHVAKVVSKLAELGMVNSTRGRTGGIVLTPEARTKKLGTLMQELE---- 78 Query: 88 VAECFASHKI--DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 +++++ CP C L VL+ A FFD L + +I +V Sbjct: 79 -GPRLSNYRVHDPCPFDPECQLHGVLQLAAQQFFDHLDKTTINDIV 123 >gi|49076390|gb|AAT49554.1| PA4169 [synthetic construct] Length = 143 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL + A H + P I + + + + + + L G V + +G RGG RL +P Sbjct: 11 LHVLTHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99 IT+LD+ +A S A ++ +C Sbjct: 70 ADITLLDIHQALGASSIFAIGLSTDHPEC 98 >gi|28869602|ref|NP_792221.1| hypothetical protein PSPTO_2406 [Pseudomonas syringae pv. tomato str. DC3000] gi|28852844|gb|AAO55916.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|331018967|gb|EGH99023.1| hypothetical protein PLA106_23258 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 148 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + L A+ + P R +A + + + +L L AG+ + G Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC--GLTSVLRKA 114 GG L RPA++I +LDV +A E++ E F+SH++ C + G+ L L +A Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDT----ELFSSHRVAPCEQCAVGGNILEALAPTLGRA 116 Query: 115 LNAFFDVLTQYSI 127 A D L + ++ Sbjct: 117 RTALEDELAKVTV 129 >gi|222106516|ref|YP_002547307.1| hypothetical protein Avi_5475 [Agrobacterium vitis S4] gi|221737695|gb|ACM38591.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 155 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 5/138 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + IS+IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLAQLGPGETAFISEIALRNNIPKKFLDTILLELRNGGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L PA +I I ++ + C + DC +C + + + +A Sbjct: 62 GGYSLSHPASEIRIGHAIRLLDGPLAPIRCASRTAFEACDDCADPVNCQVRRSMTQVRDA 121 Query: 118 FFDVLTQYSIECLVRNRS 135 +L ++E V S Sbjct: 122 IAAILDNMTLEQFVATPS 139 >gi|146299258|ref|YP_001193849.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153676|gb|ABQ04530.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium johnsoniae UW101] Length = 136 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L Y A N+ P +I++IA++ IS FL IL L +G + +G+ Sbjct: 2 LSKKTKYGIKALTYLARRENNEPVQIAEIAKSEHISIKFLESILLLLRNSGFLGAKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116 GG L + I++ V + E + C ASH DC +C ++ + + Sbjct: 62 GGYYLIKDPKDISMAKVYRILEGPIALLPC-ASHNFYEKCDDCDDESTCAARRLMTEVRD 120 Query: 117 AFFDVLTQYSI 127 +L S+ Sbjct: 121 NTLKILESNSL 131 >gi|325130469|gb|EGC53229.1| rrf2 transcriptional regulator family protein [Neisseria meningitidis OX99.30304] Length = 130 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++S I+E IS +L ++ L +AG+VE++RG GG L PA +I I ++ A E+ Sbjct: 9 KLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDR 68 Query: 86 FFVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSI 127 +C + K +C C L L K +N + +T SI Sbjct: 69 LDATQCGS--KANCHHGAPCLTHDLWENLNKTINDYLGSVTLQSI 111 >gi|307323805|ref|ZP_07603014.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306890254|gb|EFN21231.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 143 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 11/105 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L + G+V++ RG G L R IT+LDV +A E Sbjct: 32 QIATSVNTNPVVIRRLLSELRRTGLVDSRRGAGAGWTLSRDLAAITLLDVYEAVEPGPVF 91 Query: 89 A--------ECFASHKIDCPLVGSCG-LTSVLRKAL--NAFFDVL 122 A EC H I L G + + LR+ L DVL Sbjct: 92 ALHRSAPDPECVVGHGIGPALTAVYGEIEATLRRELARTTLEDVL 136 >gi|319653880|ref|ZP_08007974.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2] gi|317394416|gb|EFV75160.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2] Length = 137 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 40/86 (46%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + I+E+ + + + K+L L K G +++ G GG R Sbjct: 9 IHSLTYLALQLDRMSTSDAISESAGVHPVRIRKVLSLLKKHGFIKSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHK 96 ++ + D+ K T E +C S++ Sbjct: 69 SEVNLWDIYKITSEGALQPKCPDSNE 94 >gi|254462391|ref|ZP_05075807.1| Rrf2 family protein [Rhodobacterales bacterium HTCC2083] gi|206678980|gb|EDZ43467.1| Rrf2 family protein [Rhodobacteraceae bacterium HTCC2083] Length = 69 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 E + EC C L SCGLTS LR A +AF+ L+ ++ L +N + + ++ Sbjct: 5 ESQTELVECLRPDGGSCVLAPSCGLTSALRVAQDAFYTSLSTMTLADLTKNNAPMARLL 63 >gi|149196442|ref|ZP_01873497.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155] gi|149140703|gb|EDM29101.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155] Length = 147 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 15/130 (11%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELF------LFKILQPLVKAGIVET 56 L K+ +Y I L + + N +S + E C EL+ + +Q + AGI+++ Sbjct: 4 LNKKVEYAIIALQH--MKNVNEGEMSTVKEIC---ELYGAPFDVTSRAMQKMASAGILKS 58 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT---SVLRK 113 ++G GG + ++ +LD++++ +A C C ++ +C + + L + Sbjct: 59 IKGAHGGYLIQENLGELKLLDLIESISGDISLANCVID-ACKCDMISTCNIVDPITRLNE 117 Query: 114 ALNAFFDVLT 123 L FF +T Sbjct: 118 LLRKFFAEMT 127 >gi|322419855|ref|YP_004199078.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320126242|gb|ADW13802.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 153 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A I + FL IL L +GI+++ +GR Sbjct: 2 ISKKTKYGLKALIYLARKYDQGPILIADLAREERIPKKFLENILLSLKNSGILQSRKGRG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117 GG L RP D+IT V+ E C + +C +CG+ V++ + Sbjct: 62 GGYYLGRPPDKITFGQAVRVMEGPLAPVPCVSEMAYAKCTECGDELTCGIRLVMKDVRDE 121 Query: 118 FFDVL 122 +L Sbjct: 122 MARIL 126 >gi|269120156|ref|YP_003308333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sebaldella termitidis ATCC 33386] gi|268614034|gb|ACZ08402.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis ATCC 33386] Length = 144 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 4/94 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + YG+ ++M A N +R + IA + +SE +L +I+Q L K ++ + Sbjct: 1 MRISTKGRYGLYLMMELA-GNCTKSRCISLKNIAASQGVSEKYLEQIVQILNKEKLLIST 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 RG GG +L +I++ +++ E++ + EC Sbjct: 60 RGAYGGYKLASKPSEISVGTILRCLEKTIDIPEC 93 >gi|332637437|ref|ZP_08416300.1| transcriptional regulator [Weissella cibaria KACC 11862] Length = 162 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 V+M + D + +++ +S +L KI + L AG++ + + GG L + ++ Sbjct: 14 VVMLAQLPEDETLKSQEMSARMQVSHSYLLKIAKKLKDAGVITSSASKNGGYSLAKKPEE 73 Query: 73 ITILDVVKATEESFFVAECF 92 I+ LD+ A E E F Sbjct: 74 ISFLDLFDAVESGEAFHENF 93 >gi|330958789|gb|EGH59049.1| hypothetical protein PMA4326_09575 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 148 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + L A+ + P R +A + + + +L L AG+ + G Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC--GLTSVLRKA 114 GG L RPA++I +LDV +A E++ E F+SH++ C + G+ L L +A Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDT----ELFSSHRVAPCEKCAVGGNILEALAPTLVRA 116 Query: 115 LNAFFDVLTQYSI 127 +A D L + ++ Sbjct: 117 RSALEDELAKVTV 129 >gi|329768830|ref|ZP_08260259.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325] gi|328838223|gb|EGF87836.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325] Length = 167 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 1 MHLTKRTDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MHLTK T+ I V++Y + Y N +I++ IS +L KI++ LV +V+ Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHIYLNS-KEISKRLNISPTYLKKIMRKLVVHNLVKANT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK-- 113 G GG + R +T+ DV A E F + + S + L + LRK Sbjct: 60 GVGGGYK-YRSNKTVTLYDVYVALNGEVEVFVLKTDYVSKIFEGALAVDKRYSEYLRKVN 118 Query: 114 ALN-AFFDVLTQYSIECLVRN 133 +N + + L Q +IE +V + Sbjct: 119 TINHSIKEALEQITIEEIVED 139 >gi|58337328|ref|YP_193913.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM] gi|58254645|gb|AAV42882.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM] Length = 153 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + K + VL+ A+ + P + +++ +S+ +L KIL L ++ Sbjct: 1 MKINKSVEQATYVLLILALQKKHTPLKSRVLSKTMGVSDSYLKKILMMLKHNELITASAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 ++ G +L RP D+I++ DV+ A E E +A + D + + L+ Sbjct: 61 KKVGYQLARPIDEISLKDVLYALELNHNQIEFNHLANNIFDDQ-DHVEESENKIINTLQA 119 Query: 114 ALNAFFDVLTQYSIECLVRN 133 L++F+D L + + L+++ Sbjct: 120 GLSSFYDELDELKLSDLLKD 139 >gi|258591782|emb|CBE68083.1| Transcriptional regulator, BadM/Rrf2 family [NC10 bacterium 'Dutch sediment'] Length = 136 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 18 AIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A+H + P +I IA+ + +L +IL L +AG +E+ RG GG L + +IT+ Sbjct: 5 ALHYEQGPIQIEDIAKRQHLPARYLEQILLSLKRAGFLESKRGVSGGYYLAKHPREITVG 64 Query: 77 DVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 +++A E C S + + C C L + + +A ++ + S+E L Sbjct: 65 AIIRAMEGPIVPIFCVGSGQREICIEEPQCCLRDIWAEVRDAVSHIVDRTSLEDL 119 >gi|149180765|ref|ZP_01859268.1| transcriptional regulator [Bacillus sp. SG-1] gi|148851555|gb|EDL65702.1| transcriptional regulator [Bacillus sp. SG-1] Length = 206 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%) Query: 10 GIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 I+ L+ A H P+ + +AE +FL KIL+ LVK +++ GR GG L + Sbjct: 83 AIQALLVLANHEGLCPSGV--LAEKLDSKSVFLRKILRHLVKEELIQAKEGRDGGYYLVK 140 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKALNAFF-DVLTQY 125 + I + DV A F F +C +C S+ LR + ++ + L Q Sbjct: 141 NPEDIKLSDVYNAMRSETFSKGFFDVESKEC--FAACTRDSLFELRDEMESWIVNGLEQK 198 Query: 126 SIECLVRN 133 +I+ L++ Sbjct: 199 TIKDLMKQ 206 >gi|16264868|ref|NP_437660.1| hypothetical protein SM_b20994 [Sinorhizobium meliloti 1021] gi|307307992|ref|ZP_07587710.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|15141007|emb|CAC49520.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306901396|gb|EFN32000.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 177 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LTK+ YG++ ++ A + I++IA + + FL I+ L AG + + +G Sbjct: 26 LMLTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSCGLTSVLRKAL 115 GG L RPA +I + V++ + C + ++++ DC +C + + Sbjct: 86 PGGGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVR 145 Query: 116 NAFFDVLTQYSI 127 +A D+L ++ Sbjct: 146 DAVADILDNMTL 157 >gi|295705354|ref|YP_003598429.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294803013|gb|ADF40079.1| transcriptional regulator, putative [Bacillus megaterium DSM 319] Length = 159 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 7/138 (5%) Query: 1 MHL---TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 MH+ +++ Y I +L + P + I+ S + K+L+ LV A ++ +V Sbjct: 1 MHMKTGVEQSVYAILLLTFLPEKAVLPGDV--ISTQLGGSPTYFQKLLRKLVSADLLASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G +GG RL + ++I I D+ A E +S + + ++ C L+ ++ +A Sbjct: 59 PGSKGGFRLKKTPEEIRIYDIYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118 Query: 116 NAFFDVLTQYSIECLVRN 133 +++ +L + +I L Sbjct: 119 SSWQSILKRQTIATLTNE 136 >gi|297624973|ref|YP_003706407.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297166153|gb|ADI15864.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix DSM 17093] Length = 165 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ Y + L + P R I+EA ++ +L +IL L GI+ + Sbjct: 11 MRLSTTDIYAFQALGFLGTQP--PGRWVGSDTISEATGVARPYLVRILAQLTAKGIIVSK 68 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC-GLTSVLRKAL 115 +G GG L R A I + DV++A + C + + + C C ++V + Sbjct: 69 KGAGGGYALVREAHLINLRDVMRAIDGPVAPLSCVSLNWHVPCVEEARCHARSAVWERVR 128 Query: 116 NAFFDVLTQYSIECLVRN 133 +A L++ S+ L + Sbjct: 129 DALLTALSEVSVADLAAD 146 >gi|15891276|ref|NP_356948.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str. C58] gi|15159651|gb|AAK89733.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str. C58] Length = 173 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 17/80 (21%), Positives = 43/80 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL ++T+ +L CA + ++A+ ++ ++++ L + G++++ RG Sbjct: 1 MHLKRQTEIAFGILAVCARQEGEIISVQKVAQEIGATKDHTYQVVALLARNGLLQSERGP 60 Query: 61 RGGVRLCRPADQITILDVVK 80 GG++L R + + +V++ Sbjct: 61 GGGLKLARDPRSVKLAEVLR 80 >gi|329298886|ref|ZP_08256222.1| BadM/Rrf2 family transcriptional regulator [Plautia stali symbiont] Length = 140 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPA +IT+ D+ Sbjct: 20 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDI 58 >gi|150376652|ref|YP_001313248.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031199|gb|ABR63315.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 179 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + LTK+ YG++ ++ A + I++IA + + FL I+ L AG + + +G Sbjct: 25 LMLTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKG 84 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L RPA +I + V++ + C Sbjct: 85 PGGGYALARPASEIRVGQVIRTLDGPLAPIRC 116 >gi|213971257|ref|ZP_03399374.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383893|ref|ZP_07232311.1| hypothetical protein PsyrptM_14720 [Pseudomonas syringae pv. tomato Max13] gi|302063596|ref|ZP_07255137.1| hypothetical protein PsyrptK_26743 [Pseudomonas syringae pv. tomato K40] gi|302131005|ref|ZP_07256995.1| hypothetical protein PsyrptN_06391 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924010|gb|EEB57588.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 148 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + L A+ + P R +A + + + +L L AG+ + G Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC--GLTSVLRKA 114 GG L RPA++I +LDV +A E++ E F+SH++ C + G+ L L +A Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDT----ELFSSHRMAPCEQCAVGGNILEALAPTLGRA 116 Query: 115 LNAFFDVLTQYSI 127 A D L + ++ Sbjct: 117 RTALEDELAKVTV 129 >gi|332765883|gb|EGJ96094.1| iscR transcriptional regulator IscR transcriptional dual regulator [Shigella flexneri 2930-71] Length = 149 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I+E IS +L ++ L K G+V +VRG GG L + A I + +V+ A + Sbjct: 12 PVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVD 71 Query: 84 ES 85 ES Sbjct: 72 ES 73 >gi|312973225|ref|ZP_07787397.1| rrf2 family protein [Escherichia coli 1827-70] gi|310331820|gb|EFP99055.1| rrf2 family protein [Escherichia coli 1827-70] Length = 149 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I+E IS +L ++ L K G+V +VRG GG L + A I + +V+ A + Sbjct: 12 PVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVD 71 Query: 84 ES 85 ES Sbjct: 72 ES 73 >gi|149202529|ref|ZP_01879501.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius sp. TM1035] gi|149143811|gb|EDM31845.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius sp. TM1035] Length = 149 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T +T Y ++ LM A RI IA + FL IL L +AG++ + RG Sbjct: 2 ITHKTKYALKALMVLADEKAGEGVALRIEDIAARSGAPKRFLEHILLDLKRAGLIGSRRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 R GG + + ++++ +V++ + C + Sbjct: 62 RNGGYEMIKEPRRVSLAEVLRLIDGPMAPLPCLS 95 >gi|256421070|ref|YP_003121723.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035978|gb|ACU59522.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis DSM 2588] Length = 142 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 6/139 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y L++ A + D P IS+IA+ IS FL IL L AGI+ + +G+ Sbjct: 2 LSKKTQYAFHALIHLAENADKGPILISEIAQEKSISIKFLENILLELKNAGILGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKALNA 117 GG L + +I + +++ + + + C + + + C CGL V+ K +A Sbjct: 62 GGYYLLKTPKEIPLAKIIRLLDGAIALLPCVSLNYYEKCENCRDEAVCGLNDVMGKVRDA 121 Query: 118 FFDVLTQYSI-ECLVRNRS 135 +L ++ + L RN S Sbjct: 122 TLKILETKTLKDILTRNVS 140 >gi|320175095|gb|EFW50208.1| Iron-sulfur cluster regulator IscR [Shigella dysenteriae CDC 74-1112] Length = 152 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I+E IS +L ++ L K G+V +VRG GG L + A I + +V+ A + Sbjct: 15 PVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVD 74 Query: 84 ES 85 ES Sbjct: 75 ES 76 >gi|206603887|gb|EDZ40367.1| Putative transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 159 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 39/74 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + +AE+ + + +IL L KAG+V + +G+ GGV L + + I++L++ +A E Sbjct: 50 AHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIFRAVGEESV 109 Query: 88 VAECFASHKIDCPL 101 A CP+ Sbjct: 110 FAFNPNPPNPKCPV 123 >gi|329895576|ref|ZP_08271072.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088] gi|328922255|gb|EGG29605.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088] Length = 149 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 6/129 (4%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H ++ P ++ I+ IS +L ++ L K G+V++VRG GG L + + Sbjct: 4 MLDLALHREHGPIPLAGISARQDISLSYLEQLFAQLRKHGLVKSVRGPGGGYYLGKSLEV 63 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAFFDVLTQYSIECLV 131 I++ DV++A E C + C +C LT L L + D L S+ LV Sbjct: 64 ISVADVIEAVNEDTDATRCRG--RGSCQKGATC-LTHHLWSGLSDQIRDFLRNISLADLV 120 Query: 132 RNRSSIKKI 140 R I++I Sbjct: 121 -VREEIREI 128 >gi|255326646|ref|ZP_05367722.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296] gi|255295863|gb|EET75204.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296] Length = 164 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 9/93 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A + + ++ KI+ L KA I+ + RG+ G +L RP + I++LD+ A +ES + Sbjct: 47 LARSVGTNASYIRKIITLLKKADILSSQRGK-PGYQLTRPVENISLLDIYLAVQESRSIN 105 Query: 90 ECFASHKI--DCPLVGSCGLTSVLRKALNAFFD 120 H +CP VG+ L +A+N F+ Sbjct: 106 LFHTHHNANEECP-VGAHIL-----QAVNPIFE 132 >gi|292488270|ref|YP_003531152.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|292899465|ref|YP_003538834.1| transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291199313|emb|CBJ46430.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291553699|emb|CBA20744.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|312172409|emb|CBX80666.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC BAA-2158] Length = 152 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G +RL RPA IT+ D+ Sbjct: 41 FVRKMMVPLTRDGIIISTLGRSGSIRLGRPAQLITLCDI 79 >gi|124514978|gb|EAY56489.1| putative transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] Length = 159 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 39/74 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + +AE+ + + +IL L KAG+V + +G+ GGV L + + I++L++ +A E Sbjct: 50 AHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIFRAVGEESV 109 Query: 88 VAECFASHKIDCPL 101 A CP+ Sbjct: 110 FAFNPNPPNPKCPV 123 >gi|307313736|ref|ZP_07593354.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|306899226|gb|EFN29863.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 135 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 14/117 (11%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA+ + + + + + L + GIV + GR GG R+ + AD+IT+ V A + + Sbjct: 28 IAKMLNTNPVVVRRTMAALKEKGIVTSAGGRSGGWRIAKGADEITVEQVHDALQTGSAFS 87 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR---SSIKKIFNA 143 + CP+ G A+N F D E +R R ++I+ + NA Sbjct: 88 IALSRDHSTCPVEG----------AVNTFLD-QAMADAERALRTRFAGTTIQDLANA 133 >gi|322417915|ref|YP_004197138.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320124302|gb|ADW11862.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 149 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + + + ++ A IA+ IS L KI++ LV G+V+ VRG Sbjct: 1 MKLNKASLFALIAVLELASDPKQQKSTLDIADKYGISTHHLAKIMRNLVHHGLVQAVRGV 60 Query: 61 RGGVRLCRPADQITILDVV 79 GG A + T+LDVV Sbjct: 61 GGGYTFSGNAKRTTLLDVV 79 >gi|254437797|ref|ZP_05051291.1| rrf2 family protein (putative transcriptional regulator) [Octadecabacter antarcticus 307] gi|198253243|gb|EDY77557.1| rrf2 family protein (putative transcriptional regulator) [Octadecabacter antarcticus 307] Length = 157 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 37/59 (62%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + +++ +S +L ++ L +AG+VE+VRG GG RL + A I +++++ A +E+ Sbjct: 28 LGELSRRQGLSLPYLEQLFVKLRRAGLVESVRGPGGGYRLAKGASDIRVVEILAAVDET 86 >gi|304397746|ref|ZP_07379623.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] gi|304354918|gb|EFM19288.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] Length = 164 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPA +IT+ D+ Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDI 79 >gi|297561597|ref|YP_003680571.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846045|gb|ADH68065.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 150 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 14/113 (12%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L KAG+ ++ RG G L R IT+LDV +A E Sbjct: 39 QIATSVNTNPVVIRRLLAKLNKAGLADSRRGAGAGWMLARDLAAITLLDVYQAIEPGPVF 98 Query: 89 A--------ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 A EC H I +T+V A L + ++E ++R+ Sbjct: 99 ALHRATPDPECVVGHGI------GPAMTAVYDGVEAALRGELAKTTLEDVLRD 145 >gi|261855901|ref|YP_003263184.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261836370|gb|ACX96137.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 150 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT + + + L++ A ++ +S +I+ +S +L ++ + +A +V R Sbjct: 1 MRLTTKCRHAVTALIHLANRSNEQTTVSLAEISTIQGVSISYLEQLFSKMRQADLVIGTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEE 84 G GG RL RP +QIT+ + A ++ Sbjct: 61 GPGGGYRLNRPPEQITVAHIADAIDD 86 >gi|225028923|ref|ZP_03718115.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353] gi|224953762|gb|EEG34971.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353] Length = 140 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 1/126 (0%) Query: 9 YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 Y +RV++ A H N+ + IA+ IS+ +L IL+ LVK +++ +RG+ GG +L Sbjct: 8 YALRVMLDLAEHGNEGYIPLKDIAKRQAISDKYLESILKSLVKQKMLKGLRGKGGGYQLT 67 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 R + ++ ++++ E + C DCP C + +K + D ++ Sbjct: 68 RTPAEYSVGEILEVAEGTLAPVACLMDDAEDCPRANQCRTLPMWKKFDSLVHDFFYNITL 127 Query: 128 ECLVRN 133 E ++ + Sbjct: 128 EQILED 133 >gi|259908456|ref|YP_002648812.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96] gi|224964078|emb|CAX55584.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96] Length = 143 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G +RL RPA IT+ D+ Sbjct: 32 FVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCDI 70 >gi|21221109|ref|NP_626888.1| hypothetical protein SCO2652 [Streptomyces coelicolor A3(2)] gi|6900951|emb|CAB71827.1| hypothetical protein SC8E4A.22 [Streptomyces coelicolor A3(2)] Length = 144 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L ++G+VE+ RG G L R +T+LDV +A E Sbjct: 32 QIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSLARELGSMTLLDVYEAVEPGPL- 90 Query: 89 AECFASHKI--DCPLVGSCGLTSVLRKALNAFFDV----LTQYSIECLVRN 133 FA H+ D V G+ +R + L + ++E ++RN Sbjct: 91 ---FAMHRTTPDQGCVVGHGIQPAMRDVYEGIEETVRHELARVTLEDVLRN 138 >gi|283478404|emb|CAY74320.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM 12163] gi|310767659|gb|ADP12609.1| HTH-type transcriptional regulator iscR [Erwinia sp. Ejp617] Length = 152 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 26/39 (66%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G +RL RPA IT+ D+ Sbjct: 41 FVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCDI 79 >gi|315185408|gb|EFU19180.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6578] Length = 145 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 ++A + + E L KILQ L +AG++ V+G GG L R ++TI +V +A +E Sbjct: 39 ELASSTGLPEARLRKILQRLGRAGVLRAVQGAHGGYVLERSLSELTIGEVARALDE 94 >gi|297163402|gb|ADI13114.1| hypothetical protein SBI_09996 [Streptomyces bingchenggensis BCW-1] Length = 144 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L +AG+VE+ RG G L R +T+LDV +A E Sbjct: 32 QIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSLARELGSMTLLDVYEAVEPGPL- 90 Query: 89 AECFASHK 96 FA H+ Sbjct: 91 ---FAMHR 95 >gi|170736329|ref|YP_001777589.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818517|gb|ACA93099.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia MC0-3] Length = 137 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%) Query: 14 LMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++ IH D P IA C + + + ++L L G V++ +G GG L Sbjct: 1 MLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGGGWALSVAL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128 D IT+LDV +A E ++ + +C + + L++ L++A + + ++ Sbjct: 61 DDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLARFGEVTLG 120 Query: 129 CLVRN 133 L R+ Sbjct: 121 MLSRD 125 >gi|1381739|gb|AAB09668.1| HI0379 homolog [Neisseria meningitidis] Length = 150 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++S I+E IS +L ++ L +AG+VE++RG GG L PA +I I ++ A E+ Sbjct: 27 KLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDR 86 Query: 86 FFVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSI 127 +C + K +C C L L K +N + +T SI Sbjct: 87 LDATQCGS--KANCHHGAPCLTHDLWENLNKTINDYLGSVTLQSI 129 >gi|329926661|ref|ZP_08281072.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] gi|328939070|gb|EGG35435.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] Length = 160 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56 MH+ + + L+ + N P+R I++ S + K+L+ LV A ++ + Sbjct: 1 MHMKTGVEQSVYALV---LLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTS-VLRK 113 V G +GG RL + + I + DV A E +S + + +D SC L S ++ + Sbjct: 58 VPGIKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESCCLLSDLMEE 117 Query: 114 ALNAFFDVLTQYSIECL 130 A +++ VL + +I L Sbjct: 118 AESSWKAVLKRETIASL 134 >gi|310815010|ref|YP_003962974.1| Putative HTH-type transcriptional regulator rrf2-like protein [Ketogulonicigenium vulgare Y25] gi|308753745|gb|ADO41674.1| Putative HTH-type transcriptional regulator rrf2-like protein [Ketogulonicigenium vulgare Y25] Length = 153 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/146 (19%), Positives = 61/146 (41%), Gaps = 7/146 (4%) Query: 3 LTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A RI +IA + FL IL L AG++ ++RG Sbjct: 2 ITQKMKYALKALMVLADAKAEGIAAMRIEEIARRSDTPKRFLEHILLELRNAGVIASIRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + + + + +++ + C + DC +C L + Sbjct: 62 RAGGYTLIKEPEAVQLSQMLRLIDGPIAPLPCLSRSAYQRCEDCSDEATCRLRRAFSEVF 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141 ++ ++ ++ L+ + + ++ Sbjct: 122 WSYLVIIDSLTLADLIAQPAVVAQVI 147 >gi|312891725|ref|ZP_07751234.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] gi|311295808|gb|EFQ72968.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] Length = 136 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 12/115 (10%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A + I+ + + K L L K +V + G+ GG L +PA +I + DV +A ++S + Sbjct: 29 LAGSININPVLVRKELINLRKHNLVGSKEGKNGGAYLLKPATEIRLSDVYEAVKQSPLLG 88 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142 + + CP VG + +N D L + LV+ N +++++ N Sbjct: 89 QAKNTPNPACP-VG---------RQINQHLDSLHADAERALVKQLNTTTLQQFVN 133 >gi|210617663|ref|ZP_03291694.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787] gi|210149210|gb|EEA80219.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787] Length = 147 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +A + ++ + + KIL L AG+V+ RG GG + +P D+IT D+ +A E Sbjct: 31 LAASINVNPVIIRKILSQLKAAGLVKVQRGS-GGASIAKPLDEITFFDIYQAVE 83 >gi|146300166|ref|YP_001194757.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154584|gb|ABQ05438.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium johnsoniae UW101] Length = 149 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR ++ A + R I +A+ E F KI+Q L K GI+ + +G Sbjct: 2 FSKACEYGIRASIFIATKSSKGIRVGIKDVAKEIDSPEPFTAKIMQILTKNGIIHSAKGV 61 Query: 61 RGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + A I ++ +V A + C K +C C + +K Sbjct: 62 GGGFEVSKEALKSIKLIQIVDAIDGDKIYRGCGIGLK-ECSEEHPCPVHFEFKKIRGLLL 120 Query: 120 DVLTQYSIECL 130 +L+ ++E L Sbjct: 121 QMLSTTTLEQL 131 >gi|218515594|ref|ZP_03512434.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 76 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITI 75 GG L RPA +I I Sbjct: 62 GGYSLSRPASEIRI 75 >gi|291617389|ref|YP_003520131.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103] gi|291152419|gb|ADD77003.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103] Length = 183 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPA IT+ D+ Sbjct: 60 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAADITLRDI 98 >gi|124002311|ref|ZP_01687164.1| RRF2 family protein [Microscilla marina ATCC 23134] gi|123992140|gb|EAY31508.1| RRF2 family protein [Microscilla marina ATCC 23134] Length = 148 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M R I + ++ I D SQ+ A++ + + + +I+ L I+ +V G Sbjct: 1 MQANGRFTTAIHICIFMQIKGDEKLISSQVLADSVKTNPVVIRRIVARLRDNDIIGSVAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 +GG L RPA+QI++ D+ +A E+ Sbjct: 61 AKGGFFLKRPANQISLWDIYQAVRET 86 >gi|42526313|ref|NP_971411.1| hypothetical protein TDE0801 [Treponema denticola ATCC 35405] gi|41816425|gb|AAS11292.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gi|325473257|gb|EGC76452.1| hypothetical protein HMPREF9353_02247 [Treponema denticola F0402] Length = 144 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 20/114 (17%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 C + +D+ +AE+ + + + K++ L AG++E +G GG+ L + A QI+ L Sbjct: 24 CKVTSDF------LAESVKTNPVVIRKLMSALKNAGLIEITQGT-GGIALKKKAAQISFL 76 Query: 77 DVVKATEESFFVAECFASHKI---DCPLVGSCGL---------TSVLRKALNAF 118 D+ A ES + F H +CP+ + L K LN+F Sbjct: 77 DIFNAV-ESIKDGKLFKIHDTPPNECPVAQKINFLLDGYFLDAQTTLEKKLNSF 129 >gi|148555080|ref|YP_001262662.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148500270|gb|ABQ68524.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 152 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D P +A+A + + +++ L + G+V + +G GG + RP Sbjct: 11 LHVLLHMA-EQDGPVTSEVLAKAMDTHPVVVRRVMAGLREQGLVRSEKGHGGGWTIARPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AFFDV 121 D IT+ D+ A +A H+ + P C + + AL AF D Sbjct: 70 DGITLRDIYGALGGPSLLA---MGHRTEAP---GCLVEQAVNAALGRAFHDA 115 >gi|332654223|ref|ZP_08419967.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] gi|332517309|gb|EGJ46914.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] Length = 139 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A + IA+ +SE +L I++ L + G + VRG Sbjct: 3 MMVSTKGRYALRVMIDLAQQGGAGYIPLKDIAQRQGLSEKYLESIVKLLARNGDLAGVRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 + GG RL R ++ +++ TE C A Sbjct: 63 KGGGYRLTRAPKDYSVGAILRLTEGKLAPVNCQA 96 >gi|121607635|ref|YP_995442.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552275|gb|ABM56424.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter eiseniae EF01-2] Length = 174 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L + H IA+ ++ + +I+ LV+AG++ + RG GGV + R Sbjct: 12 ILSFVTYHGPDMIPTQTIAKWVNVNASRVRQIVARLVRAGLLASTRGGEGGVVIGRAPSD 71 Query: 73 ITILDVVKATEES----FFVAECFASHKIDC 99 IT+LDV A E F V F+ K C Sbjct: 72 ITLLDVFDAVAEQDTALFCVDNPFSDWKDRC 102 >gi|312868812|ref|ZP_07729001.1| transcriptional regulator [Lactobacillus oris PB013-T2-3] gi|311095655|gb|EFQ53910.1| transcriptional regulator [Lactobacillus oris PB013-T2-3] Length = 143 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L+Y I N S IA+ + + +++ +VKAGI++ G Sbjct: 1 MKYSHRLSDAVHILVYLEILGS--NSSSAIADNVNSNPSLIRRLVASMVKAGILQR-SGH 57 Query: 61 RG--GVRLCRPADQITILDVVKATE 83 G ++L RPA Q+++LD+ +A E Sbjct: 58 HGEITIKLTRPAAQVSLLDIYQAVE 82 >gi|325958233|ref|YP_004289699.1| phosphate uptake regulator PhoU [Methanobacterium sp. AL-21] gi|325329665|gb|ADZ08727.1| phosphate uptake regulator, PhoU [Methanobacterium sp. AL-21] Length = 299 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 21/115 (18%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 KR+D ++ ++ +H D P +IAE ++ ++ K+LQP+VK G+V RR Sbjct: 2 KRSDSTLKAILDVILH-DNPATQDEIAEKLGLTRRYVTKLLQPMVKRGVV-----RRA-- 53 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ILD+ K E +E F K G+ + +L+ + F Sbjct: 54 ---------YILDLKKFDE----FSEMFDEEKTSREYAGAYLIKDMLKNMVGHVF 95 >gi|300866831|ref|ZP_07111509.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300335181|emb|CBN56669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 146 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P +I IA I + +L ++L L + G++ + RG +GG L R +IT+L+++ E Sbjct: 27 PLQIRSIASQQNIPDRYLEQLLATLRRGGVIRSQRGAKGGYLLAREPWKITLLEILNCLE 86 >gi|291522993|emb|CBK81286.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus GD/7] Length = 145 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D I +L++ A+ +D ++IAE+ + ++ +++ L AGIV +G Sbjct: 5 TKLSD-TIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG-HAN 62 Query: 64 VRLCRPADQITILDVVKATE 83 L + AD+I + D+ +A E Sbjct: 63 AALAKSADKINMYDIYRAVE 82 >gi|169335460|ref|ZP_02862653.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM 17244] gi|169258198|gb|EDS72164.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM 17244] Length = 141 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGR-RGGVRLCRPADQITILDVVKA 81 +I+E CI+ KIL L KAG+V+T G +GG A IT+LDV +A Sbjct: 27 EISENICINPARARKILSKLKKAGLVKTREGSVKGGYSFVLNAANITLLDVYEA 80 >gi|308186770|ref|YP_003930901.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] gi|308057280|gb|ADO09452.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] Length = 164 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 F+ K++ PL + GI+ + GR G + L RPA IT+ D+ Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAADITLRDI 79 >gi|167769781|ref|ZP_02441834.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM 17241] gi|167668142|gb|EDS12272.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM 17241] Length = 121 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 +Q+ + I + F +KI++ L KA V RG GG RL + T+ D++ A + F Sbjct: 10 AQLCQRELIPQPFAYKIMRKLSKASFVSITRGADGGCRLAVDLREKTLYDLLFAMDSVEF 69 Query: 88 VAECFAS-----HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 V C A + C G CG+ + L A L +S+ ++ + Sbjct: 70 VNACMAPGYQCLWRERCG--GKCGIHAQLESIQQAVDRELQSHSLASILSGK 119 >gi|89894263|ref|YP_517750.1| hypothetical protein DSY1517 [Desulfitobacterium hafniense Y51] gi|219668676|ref|YP_002459111.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|89333711|dbj|BAE83306.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538936|gb|ACL20675.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 151 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 16/143 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVET 56 M L+ R +++L+ A P + +EA +S + + +I+ L KAG++ Sbjct: 1 MQLSSRFPVAVQILIIIAW---CPEDVKVTSEALAVSVNTNPVLIRRIMGYLKKAGLIAI 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 G GG +L R ++IT+L V +A E + + A CP+ C + VLR Sbjct: 58 SSGT-GGAKLTRSTEEITLLAVYRAVELTDQHALFGLHAHPNAYCPI--GCRINDVLRPP 114 Query: 115 L----NAFFDVLTQYSIECLVRN 133 L NA L + +I+ L+ + Sbjct: 115 LEEARNALEGSLAKVTIQELLSS 137 >gi|225027880|ref|ZP_03717072.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353] gi|224954827|gb|EEG36036.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353] Length = 145 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D I +L++ A+ +D ++IAE+ + ++ +++ L AGIV +G Sbjct: 5 TKLSD-TIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG-HAN 62 Query: 64 VRLCRPADQITILDVVKATE 83 L + AD+I + D+ +A E Sbjct: 63 AALAKSADKINMYDIYRAVE 82 >gi|311745248|ref|ZP_07719033.1| Rrf2 family protein [Algoriphagus sp. PR1] gi|126577775|gb|EAZ81995.1| Rrf2 family protein [Algoriphagus sp. PR1] Length = 136 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + I+ + + K + L KAG+VE+ +G+ GG +L + + I + ++ A + S + Sbjct: 29 IAGSININPVMVRKEIGVLTKAGLVESRKGKVGGSKLAKRSSDIRLDEIYLAVKNSDVLG 88 Query: 90 ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132 + + CP+ + L S+ + N+ D L ++E V+ Sbjct: 89 KKNLKPNVLCPIGKNINQKLGSLFSEIDNSVIDELHGKTLENFVK 133 >gi|229823777|ref|ZP_04449846.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271] gi|229786816|gb|EEP22930.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271] Length = 150 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I L + D+ S ++E+ ++ + + +L L AGI+E+ +G Sbjct: 1 MQISSRFTIAIHSLAVIYLRQDHQRVTSNFLSESIQVNPVVVRSVLSGLKAAGIIESRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG RL +P D IT D+ T +S F H DCP+ Sbjct: 61 S-GGSRLAKPLDAITFYDIY-VTVDSVDKEGLFNFHPNPHQDCPV 103 >gi|227871937|ref|ZP_03990329.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268] gi|227842231|gb|EEJ52469.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268] Length = 118 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 5/59 (8%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRG--GVRLCRPADQITILDVVKATEE 84 QIA + + ++ K+ L KAGI+E GR+G G RL +PA +I++L++ K+ E Sbjct: 1 EQIANSVGTNASYIRKLTTRLSKAGIIE---GRKGISGFRLLKPAREISLLEIYKSIME 56 >gi|154174545|ref|YP_001408025.1| BadM/Rrf2 family transcriptional regulator [Campylobacter curvus 525.92] gi|112803332|gb|EAU00676.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter curvus 525.92] Length = 134 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 3/101 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+ + P + I+ IS+ FL KILQ L K I+++ + Sbjct: 1 MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKEQILKSYKVA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP 100 GG L I+I +++ E+ V EC S CP Sbjct: 60 NGGFALQADPQNISIKTIIECAEKREVSVFECSTSAD-GCP 99 >gi|328958167|ref|YP_004375553.1| putative transcriptional regulator [Carnobacterium sp. 17-4] gi|328674491|gb|AEB30537.1| putative transcriptional regulator [Carnobacterium sp. 17-4] Length = 156 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVR 58 M LTK + I +L + ++Y S + + S ++ KI++ LV +G+ ++ Sbjct: 1 MKLTKGLEQAICILAMLSTQDNYIPITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE 83 G GG L + ++I +L++V+A E Sbjct: 61 GSNGGFILAKKPEKINLLEIVEALE 85 >gi|154684993|ref|YP_001420154.1| YwnA1 [Bacillus amyloliquefaciens FZB42] gi|154350844|gb|ABS72923.1| YwnA1 [Bacillus amyloliquefaciens FZB42] Length = 147 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 13/150 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R GI +L I+ D + +A + + F+ KI+ L KAG+V+ VR Sbjct: 1 MSISSRFAVGIHILALIEINEDGISTSEFLAGSVNTNPAFIRKIVGMLKKAGLVK-VRPG 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 G L + +IT+LDV +A E F+ H+ P C + ++ + F+ Sbjct: 60 IAGAELAKDLTEITLLDVYRAV-NVVQDKELFSIHENPNP---QCPVGRNIQSTIGPIFE 115 Query: 121 V--------LTQYSIECLVRNRSSIKKIFN 142 + L +IE +V++ +K+ N Sbjct: 116 IAQSALEKALGHITIEDVVKDIIEKEKLTN 145 >gi|331003016|ref|ZP_08326528.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413060|gb|EGG92435.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon 107 str. F0167] Length = 139 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 38/64 (59%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + IA+ +SE +L I++ LVK ++ +RG+ GG +L + IT+ +V++ EE+ Sbjct: 28 LHDIAKRQELSEKYLESIIKLLVKNKLLVGLRGKGGGYKLTKSPSDITVGEVLRIAEENI 87 Query: 87 FVAE 90 + + Sbjct: 88 MMDD 91 >gi|254387868|ref|ZP_05003106.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064] gi|326446779|ref|ZP_08221513.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces clavuligerus ATCC 27064] gi|197701593|gb|EDY47405.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064] Length = 146 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L + G+V++ RG G L R IT+LDV +A E Sbjct: 35 QIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWMLSRDLPTITLLDVYEAVETGPVF 94 Query: 89 A--------ECFASHKIDCPLVGSC--GLTSVLRKAL--NAFFDVL 122 A EC I P++G+ G+ + LR L DVL Sbjct: 95 ALHPAAPDPECVVGRGI-APVLGAAYDGVEAALRAELARTTLEDVL 139 >gi|254454314|ref|ZP_05067751.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter antarcticus 238] gi|198268720|gb|EDY92990.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter antarcticus 238] Length = 142 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 +S +L ++ L +AG+VE+VRG GG RL R I +++++ A +E+ Sbjct: 27 VSLPYLEQLFVKLRRAGLVESVRGPGGGYRLARRTSDIRVVEILSAVDET 76 >gi|119505399|ref|ZP_01627473.1| rrf2 family protein [marine gamma proteobacterium HTCC2080] gi|119458854|gb|EAW39955.1| rrf2 family protein [marine gamma proteobacterium HTCC2080] Length = 138 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++ I+ IS +L ++ L + +V +VRG GG RL R + + +++ A + Sbjct: 12 PVSLADISGRQEISLSYLEQLFAKLRREALVTSVRGPGGGYRLARDRATLFVAEIIDAVD 71 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 ES V C + K +C C + + + L+ S+ LV NR+ ++ Sbjct: 72 ESVDVTNC--NGKGNCHHGEVCLTHDLWQDLSDRIHSFLSGISLADLVDNRAGKARL 126 >gi|152994406|ref|YP_001339241.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835330|gb|ABR69306.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1] Length = 152 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M R D + +++ IH D P +IA + + + + + L G V +V Sbjct: 1 MRFLMRKDSRLSRMLHVLIHMNQLDAPATSEKIASMLNTNPVVVRRTMAGLRDKGYVSSV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 +G GG L IT+LD+ A ES + CP+ Sbjct: 61 KGHGGGWSLAISLSDITLLDIHNAIGESSVFTIGLSDEHTSCPI 104 >gi|294818112|ref|ZP_06776754.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces clavuligerus ATCC 27064] gi|294322927|gb|EFG05062.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces clavuligerus ATCC 27064] Length = 143 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 QIA + + + + ++L L + G+V++ RG G L R IT+LDV +A E Sbjct: 32 QIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWMLSRDLPTITLLDVYEAVETGPVF 91 Query: 89 A--------ECFASHKIDCPLVGSC--GLTSVLRKAL--NAFFDVL 122 A EC I P++G+ G+ + LR L DVL Sbjct: 92 ALHPAAPDPECVVGRGI-APVLGAAYDGVEAALRAELARTTLEDVL 136 >gi|83269916|ref|YP_419207.1| hypothetical protein BAB2_1077 [Brucella melitensis biovar Abortus 2308] gi|256015879|ref|YP_003105888.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915] gi|82940190|emb|CAJ13243.1| Protein of unknown function UPF0074 [Brucella melitensis biovar Abortus 2308] gi|255998539|gb|ACU50226.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915] Length = 131 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 S+IAE I FL I L AG V + +G+ GG L PA +I I ++++A + + Sbjct: 16 SEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLAHPASEIAIGNIIRALDGALA 75 Query: 88 VAEC 91 C Sbjct: 76 PIAC 79 >gi|88658169|ref|YP_507438.1| rrf2/aminotransferase, class V family protein [Ehrlichia chaffeensis str. Arkansas] gi|88599626|gb|ABD45095.1| rrf2/aminotransferase, class V family protein [Ehrlichia chaffeensis str. Arkansas] Length = 492 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +S IA + +SE +L +I+ L K G++ + +G GG L + + IT+ ++++ E+ Sbjct: 1 MSHIANSQSLSEGYLEQIIVKLKKQGLINSTKGPGGGYSLNKSPNSITLNLILESIGENI 60 Query: 87 FVAECFASHKIDC 99 + C +H I C Sbjct: 61 KITRC-KNHLIGC 72 >gi|296116889|ref|ZP_06835494.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC 23769] gi|295976582|gb|EFG83355.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC 23769] Length = 143 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD+ ++ L+ C + P + +I+ C +S + +LQ L G++E Sbjct: 1 MQLSLHTDHAVKFLI-CMTQSGMPACVQEISGRCGLSTREVAGVLQDLHHCGLIEHATTG 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 G +RL + ++ I DV+++ E + P G+ + A AF D Sbjct: 60 EGFLRLRKDPARVRIGDVIRSIEAV----------RPMTPKEGA--FAPMFDMAHAAFVD 107 Query: 121 VLTQYSIECL 130 L YS+ L Sbjct: 108 ALNDYSLSDL 117 >gi|116255261|ref|YP_771094.1| hypothetical protein pRL110061 [Rhizobium leguminosarum bv. viciae 3841] gi|115259909|emb|CAK03003.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 151 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH D + IA+ + + + + + L + G V + +G G Sbjct: 2 RNDSRLSRMLHVLIHMDKHQHSATSDMIAKMLNTNPVVVRRTMAGLREQGYVRSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G L RP IT+LDV A E A A + C Sbjct: 62 GWTLVRPLSDITLLDVYNAIGEPHLFAIGPADDQPQC 98 >gi|261406785|ref|YP_003243026.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283248|gb|ACX65219.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 160 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56 MH+ + + L+ + N P+R I++ S + K+L+ LV A ++ + Sbjct: 1 MHMKTGVEQSVYALV---LLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTS-VLRK 113 V G +GG RL + + I + DV A E +S + + +D SC L S ++ + Sbjct: 58 VPGIKGGFRLRKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESCCLLSDLMEE 117 Query: 114 ALNAFFDVLTQYSIECL 130 A ++ VL + +I L Sbjct: 118 AETSWKAVLKRETIASL 134 >gi|307718275|ref|YP_003873807.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM 6192] gi|306532000|gb|ADN01534.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM 6192] Length = 145 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 ++A + + E L KILQ L +AG++ V+G GG L R ++TI +V +A +E Sbjct: 39 ELASSTGLPEARLRKILQRLGRAGVLRAVQGVHGGYVLERSLSELTIGEVARALDE 94 >gi|117164456|emb|CAJ88001.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 145 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 17/144 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETV 57 M R + VL + A +H + ++ QIA + + + + + L L KAG+V Sbjct: 1 MSANSRMTIAVHVLTWIALVHGRGRDVVTSDQIATSVATNPVVIRRSLADLRKAGLVTVR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLR- 112 +G G L R + I +LDV +A + FA H+ + CP+ G+ LR Sbjct: 61 QGAGAGYTLARAPESIALLDVFQAVHDE----PLFALHRSEPNQVCPV--GRGIQPALRH 114 Query: 113 ---KALNAFFDVLTQYSIECLVRN 133 A AF L SI ++R+ Sbjct: 115 VYTDAEEAFRRELAGVSIADVLRD 138 >gi|171317789|ref|ZP_02906970.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] gi|171097073|gb|EDT41928.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] Length = 146 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ IH D P IA + + + ++L L G V++ +G G Sbjct: 2 RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDCGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G L D IT+LDV +A E ++ + +C Sbjct: 62 GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPEC 98 >gi|145589828|ref|YP_001156425.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048234|gb|ABP34861.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 195 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58 M +TK + L+ A H++ ++ +IA+ +S + +L+PL ++G+V ++ Sbjct: 1 MEVTKAVKVALNTLVDIASHSNKGQLVTVPEIAQRLNMSISRIELLLRPLRESGLVIGIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKA 81 GR GG +L + ITI D+V A Sbjct: 61 GRTGGYQLSKDPRIITIKDIVLA 83 >gi|284048055|ref|YP_003398394.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] gi|283952276|gb|ADB47079.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] Length = 144 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%) Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103 ++ L KAG++ RG GGV + RP DQIT DV A E F H+ PL Sbjct: 45 LMMDLKKAGLISVRRGP-GGVEVTRPLDQITFRDVYDAVETR--KDRLFNFHENPNPL-- 99 Query: 104 SCGLTSVLRKALNA-FFDVLTQYS 126 C + + +AL+ D+ Q+ Sbjct: 100 -CPVGRNIHQALDGKLLDIQKQFQ 122 >gi|229096463|ref|ZP_04227435.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] gi|229115387|ref|ZP_04244795.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228668107|gb|EEL23541.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228687025|gb|EEL40931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] Length = 145 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT----EES 85 +AE+ + + + KI+ L +AG V RG GG L + +IT+LDV A E+ Sbjct: 32 MAESVNTNPVVIRKIMSYLKQAGFVYVNRGP-GGAGLLKDLHEITLLDVYHAVNVVEEDK 90 Query: 86 FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 F DCP+ + L +L +A +A +VL S+E L S+++ NA Sbjct: 91 LF--HIHEQPNPDCPIGANIQVVLEVILIQAQSAMEEVLKNISMEQLFE---SLQEKMNA 145 >gi|238784222|ref|ZP_04628235.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC 43970] gi|238714931|gb|EEQ06930.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC 43970] Length = 164 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H +D P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHDGPVPLADISDRQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L + A I + V+ A ++S C Sbjct: 61 PGGGYLLGKDAAAIAVGAVIIAVDDSVDATRC 92 >gi|291518758|emb|CBK73979.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio fibrisolvens 16/4] Length = 133 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%) Query: 9 YGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 Y +RV++ + N P + IAE IS+ +L I++ LV G V+ V G+ GG + Sbjct: 8 YALRVMIDLSQQN--PEEYIPLKDIAERQDISKKYLEIIVKELVHGGFVKGVSGKGGGYQ 65 Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 L R ++ ++ ++++ E S C A ++CP G C Sbjct: 66 LTRKPEEYSVGEIIELMEGSLSPVACLADENMECPREGIC 105 >gi|309777458|ref|ZP_07672413.1| transcriptional regulator superfamily [Erysipelotrichaceae bacterium 3_1_53] gi|308914772|gb|EFP60557.1| transcriptional regulator superfamily [Erysipelotrichaceae bacterium 3_1_53] Length = 150 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 ++A++ C + + K++ L KAG++ T G GG L PA I + D+ +A ++ Sbjct: 30 ELAKSICTNPARIRKVMAKLKKAGLLITREGNSGGYELSAPASAIRLSDLAQALQQPLL 88 >gi|187780034|ref|ZP_02996507.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC 15579] gi|187773659|gb|EDU37461.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC 15579] Length = 141 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ DY +RV++Y + Y R+ I+E + FL K+L+ L K+GIV + R Sbjct: 1 MKITQEADYALRVILYLS-KLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNA 117 G +GG L + I + DV++A + + C + + G+C + L K Sbjct: 60 GVKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRK 119 Query: 118 FFDVLTQYSIECLVRNRSSI 137 L + + ++ + SI Sbjct: 120 LVSELEAVNFQEILDQKGSI 139 >gi|254254969|ref|ZP_04948286.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158] gi|124899614|gb|EAY71457.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158] Length = 146 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 6 RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R D + +++ IH D P IA + + + ++L L G V++ +G G Sbjct: 2 RADSRLSRMLHALIHMDQADGPLTSETIATMLGTNAVVVRRLLGGLRDCGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 G L D IT+LDV +A E ++ + +C + + L++VL+ A A Sbjct: 62 GWALGVALDDITLLDVYRAVGEPPLFSDLVSEDTPECLVEQAVNAHLSAVLKDAEAALLA 121 Query: 121 VLTQYSIECLVRN 133 + ++ L R Sbjct: 122 RFGEVTLGMLSRE 134 >gi|23500834|ref|NP_700274.1| RrF2 family protein [Brucella suis 1330] Length = 131 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 S+IAE I FL I L AG V + +G+ GG L PA +I I ++++A + + Sbjct: 16 SEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLTHPASEIAIGNIIRALDGALA 75 Query: 88 VAEC 91 C Sbjct: 76 PIAC 79 >gi|220925187|ref|YP_002500489.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949794|gb|ACL60186.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium nodulans ORS 2060] Length = 167 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEAC--CISELFLFKILQPLVKAGIVETVRGRR 61 R + ++ A+H P +S A A + L +LQ LV+ G+++ +RG Sbjct: 26 PPRLALAVAAVIDIALHA-RPQPVSAKALAARHGLPPRHLETVLQALVRHGLLKGLRGPH 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R +I+ DV +A + D P V + + +L A AF Sbjct: 85 GGYELARERRRISAGDVARAV-------LSLEGPEPDKPAVAAALVDPLLAAAGQAFLAT 137 Query: 122 LTQYSIECLVRNRSSIKKIF 141 L ++E L R + +IF Sbjct: 138 LDAVTVEDLCRQ-AEAARIF 156 >gi|49478477|ref|YP_037503.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330033|gb|AAT60679.1| possible transcriptional regulator (rrf2 family protein) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 137 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 7/120 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLGLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 D++ + + + T E +C S+ C + S +RK L F +Y E L Sbjct: 69 DEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIFLGAEEYLGEYL 121 >gi|30263359|ref|NP_845736.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47528737|ref|YP_020086.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186205|ref|YP_029457.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|65320688|ref|ZP_00393647.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] gi|165868327|ref|ZP_02212987.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167632500|ref|ZP_02390827.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167637112|ref|ZP_02395392.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170685042|ref|ZP_02876267.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|170704922|ref|ZP_02895387.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|177649964|ref|ZP_02932965.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190564684|ref|ZP_03017605.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196035535|ref|ZP_03102939.1| rrf2 family protein [Bacillus cereus W] gi|196038146|ref|ZP_03105456.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206975367|ref|ZP_03236280.1| rrf2 family protein [Bacillus cereus H3081.97] gi|218904535|ref|YP_002452369.1| rrf2 family protein [Bacillus cereus AH820] gi|222096863|ref|YP_002530920.1| rrf2 family protein [Bacillus cereus Q1] gi|227813772|ref|YP_002813781.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229604113|ref|YP_002867615.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254685971|ref|ZP_05149830.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254723374|ref|ZP_05185162.1| rrf2 family protein [Bacillus anthracis str. A1055] gi|254738442|ref|ZP_05196145.1| rrf2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254742392|ref|ZP_05200077.1| rrf2 family protein [Bacillus anthracis str. Kruger B] gi|254752758|ref|ZP_05204794.1| rrf2 family protein [Bacillus anthracis str. Vollum] gi|254761271|ref|ZP_05213295.1| rrf2 family protein [Bacillus anthracis str. Australia 94] gi|301054901|ref|YP_003793112.1| putative Rrf2 family transcriptional regulator [Bacillus anthracis CI] gi|30257993|gb|AAP27222.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47503885|gb|AAT32561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180132|gb|AAT55508.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|164715053|gb|EDR20570.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167514619|gb|EDR89985.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167532798|gb|EDR95434.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170129777|gb|EDS98639.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|170671302|gb|EDT22040.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172083916|gb|EDT68975.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190564001|gb|EDV17965.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|195991836|gb|EDX55800.1| rrf2 family protein [Bacillus cereus W] gi|196031416|gb|EDX70013.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206746269|gb|EDZ57663.1| rrf2 family protein [Bacillus cereus H3081.97] gi|218539133|gb|ACK91531.1| rrf2 family protein [Bacillus cereus AH820] gi|221240921|gb|ACM13631.1| rrf2 family protein [Bacillus cereus Q1] gi|227005217|gb|ACP14960.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229268521|gb|ACQ50158.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|300377070|gb|ADK05974.1| putative transcriptional regulator, Rrf2 family [Bacillus cereus biovar anthracis str. CI] Length = 137 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 D++ + + + T E +C S+ C + S +RK L F Sbjct: 69 DEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110 >gi|315497324|ref|YP_004086128.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis excentricus CB 48] gi|315415336|gb|ADU11977.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis excentricus CB 48] Length = 163 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D ++A+ + + + +++ L G+V++ +G GG RL RP Sbjct: 11 LHVLLHLA-DTDKAVTSERLAQMMSTNPVVIRRVMAGLRAQGLVQSEKGHGGGWRLGRPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 ++T+ +V +A E A + +C ++ +A+NA D Sbjct: 70 KEVTLAEVYRAVGEPELFAMGNRTENPEC----------LVEQAVNAAID 109 >gi|329769741|ref|ZP_08261142.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325] gi|328838103|gb|EGF87721.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325] Length = 138 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A + + + KI+ L K G++E+ +G+ G+ L + IT+ DV + + + Sbjct: 27 LANSVNTNSSHIRKIIALLKKGGLIESQQGKT-GMALAKSTKDITLADVYQIVYPNKHLV 85 Query: 90 ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132 +CP+ + L V +A +AF++ L ++E L++ Sbjct: 86 NIHEGANKECPVGNNIENLLQPVFNEAQDAFYNKLASKTLEQLIK 130 >gi|228472954|ref|ZP_04057711.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624] gi|228275536|gb|EEK14313.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624] Length = 143 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AI++ D + +I+E I FL K+LQ L K + + +G Sbjct: 2 LSNSSKYAINAVLYLAINSSVDRKKGVKEISEVLHIPTAFLAKLLQILAKKKAICSAKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + + D+V+ + + C + C C + ++ + F Sbjct: 62 GGGFYITPENLKAPLADIVRYIDGGDKFSICLLGIR-SCSEETPCPMHYAVKPFRDEFLQ 120 Query: 121 VLTQYSIE 128 L +++IE Sbjct: 121 ELERHNIE 128 >gi|119476390|ref|ZP_01616741.1| iron-sulfur cluster assembly transcription factor IscR [marine gamma proteobacterium HTCC2143] gi|119450254|gb|EAW31489.1| iron-sulfur cluster assembly transcription factor IscR [marine gamma proteobacterium HTCC2143] Length = 174 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH P ++ I+ IS +L ++ L + +V +VRG Sbjct: 17 MRLTTKGRYAVTAMLDLAIHVGAGPISLADISSRQGISLSYLEQLFAKLRRGELVSSVRG 76 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L R I + +V A E Sbjct: 77 PGGGYLLSRGGADIFVSQIVDAVNE 101 >gi|313676819|ref|YP_004054815.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa DSM 4126] gi|312943517|gb|ADR22707.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa DSM 4126] Length = 144 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR +Y A + + IA+ E F KILQ LVK +V +++G Sbjct: 2 FSKTCEYAIRATIYIANKSKEGTNVGLKDIAKNIDSPEAFTAKILQKLVKDDLVSSIKGP 61 Query: 61 RGGVRL-CRPADQITILDVVKATEES 85 GG L ++ ++DVV+ + S Sbjct: 62 NGGFSLSATQQKEVYLIDVVRCIDGS 87 >gi|217978393|ref|YP_002362540.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] gi|217503769|gb|ACK51178.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] Length = 148 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 18 AIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 AIH+ P +A + L +LQ LV+A I++ +RG RGG L R +IT Sbjct: 19 AIHSRPLPVAAKALAARLELPPRHLETLLQALVRANILKGLRGPRGGYELARERRKITAG 78 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 V++A D LV + ++ KA AF L +IE + R Sbjct: 79 AVLRA----VLSDAAGPGEPADSKLVAKV-IAPMVEKAGAAFLAELDNITIEDICRRADE 133 Query: 137 IKKIFNAG 144 + +AG Sbjct: 134 LNLYRDAG 141 >gi|257064536|ref|YP_003144208.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792189|gb|ACV22859.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 152 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 P +QIAE+ + ++ ++ L AGI+ + GR G V L PAD++T+LDV +A Sbjct: 22 PMSSAQIAESIGTNPSWVRRLATALRGAGIIASRPGRTGFV-LAVPADELTLLDVYRA 78 >gi|153811085|ref|ZP_01963753.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174] gi|149832973|gb|EDM88056.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174] Length = 145 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D I +L++ A+ +D ++IAE+ + ++ +++ L AGI+ +G Sbjct: 5 TKLSD-TIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIIVNTQG-HAN 62 Query: 64 VRLCRPADQITILDVVKATE 83 L + AD+I + D+ +A E Sbjct: 63 AALAKSADKINMYDIYRAVE 82 >gi|110679918|ref|YP_682925.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109456034|gb|ABG32239.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 157 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIAMQPQDKLVSLGDIATRQAISLAYLEQLFVKLRRAELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 GG RL R I +++++ A +E+ Sbjct: 61 PGGGYRLTRSPSDIRVVEILSAVDET 86 >gi|330720575|gb|EGG98846.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC2047] Length = 130 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 8/111 (7%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 +S I+ IS +L ++ L + +V +VRG GG +L R +QI + ++V A ES Sbjct: 1 MSDISSRQDISLSYLEQLFSKLRRRELVTSVRGPGGGYQLARELEQICVAEIVDAVNESV 60 Query: 87 FVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSIECLVRNR 134 C + +C +C L L K +++F L+ S+ LV R Sbjct: 61 DATLCNGDN--NCQHGHACLTHNLWDDLSKQIHSF---LSSISLRDLVDRR 106 >gi|291010047|ref|ZP_06568020.1| transcriptional regulator Rrf2 family protein, putative [Saccharopolyspora erythraea NRRL 2338] Length = 147 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ R+ I L A + ++IA++ + + + +IL L A +V + GR G Sbjct: 4 LSSRSAVAIHALAMLAHRREGSLTSAEIADSLGSNPVLVRRILGRLRNAELVWSTEGRGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 G L R IT+ D A EE + F+ H P G C Sbjct: 64 GWSLARAPRDITLYDAYAAVEE----GQIFSRHT--HPPSGVC 100 >gi|284039030|ref|YP_003388960.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM 74] gi|283818323|gb|ADB40161.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM 74] Length = 142 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++K+ Y I+ L A+ Y P I+ IA+ I FL IL + GI+++ +G Sbjct: 2 ISKKAKYAIKALK--ALTESYGSGPILITDIAKRENIPHKFLEGILLEMRNHGILQSQKG 59 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKAL 115 + GG L ++I + V++ + C F DC +C + ++ + Sbjct: 60 KGGGYLLRVDPERINLAQVIRIIDGPIAPTPCVSLNFYVRCDDCADEETCSIRPIMLRVR 119 Query: 116 NAFFDVLTQYSIECLV-RNRSSI 137 +A V + +I+ LV +N+ I Sbjct: 120 DANLAVYEKTTIQMLVDKNKQPI 142 >gi|15672540|ref|NP_266714.1| hypothetical protein L153086 [Lactococcus lactis subsp. lactis Il1403] gi|13432280|sp|Q48660|YFFB_LACLA RecName: Full=Putative HTH-type transcriptional regulator yffB gi|12723445|gb|AAK04656.1|AE006290_1 hypothetical protein L153086 [Lactococcus lactis subsp. lactis Il1403] Length = 156 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A +S +L KI++ LV G++ + G+ GG L + I+ DV A E Sbjct: 31 LANRLKVSPSYLKKIIKSLVDEGLLRSTPGKNGGFSLNKELHDISFYDVFLAIEGR---G 87 Query: 90 ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127 F S + +GS C +TS L + N L+ S+ Sbjct: 88 RIFQSQGLLQNFIGSESGKAKRCAITSALDEIENTLVRTLSNVSL 132 >gi|291287446|ref|YP_003504262.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290884606|gb|ADD68306.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 141 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + + DY IR+++Y A + I ++ +S + KI+ L G + T G+ G Sbjct: 5 ILREEDYAIRIIIYLATEGKMV-KTKDICKSLYLSRPIVVKIINKLKSCGFLITKTGKEG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+ + ++ D+++ + + +C +HK C L+ C + + + + L Sbjct: 64 GLTIAEKIYDASLYDILQCMGFNSRMNQC-TTHKATCKLMPICSVNVLFCEIQQDIENRL 122 Query: 123 TQYSI-ECLVRNRS 135 Q I E L NR Sbjct: 123 KQAKIKEFLFENRD 136 >gi|315612720|ref|ZP_07887631.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315314830|gb|EFU62871.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 145 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 14/140 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R +++ A+ D ++++ +A + ++ + + K L L KAG++ R Sbjct: 1 MQISSRFTIATHMMIIIALQ-DTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115 G GG + + I++LDV +A E + F+ H +CP+ + +VL + L Sbjct: 60 G-TGGTEIIKDLKDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHAVLDQKL 116 Query: 116 NAFFDVLTQYSIECLVRNRS 135 FDV Q ++E +R S Sbjct: 117 ---FDV--QAAMENQLRQTS 131 >gi|306829070|ref|ZP_07462260.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|322374754|ref|ZP_08049268.1| Rrf2 family protein [Streptococcus sp. C300] gi|304428156|gb|EFM31246.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|321280254|gb|EFX57293.1| Rrf2 family protein [Streptococcus sp. C300] Length = 145 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 14/140 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R +++ A+ D ++++ +A + ++ + + K L L KAG++ R Sbjct: 1 MQISSRFTIATHMMISIAMQ-DTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115 G GG + + I++LDV +A E + F+ H +CP+ + +VL + L Sbjct: 60 G-TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHAVLDQKL 116 Query: 116 NAFFDVLTQYSIECLVRNRS 135 FDV Q ++E +R S Sbjct: 117 ---FDV--QAAMENQLRQTS 131 >gi|254421022|ref|ZP_05034746.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] gi|196187199|gb|EDX82175.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] Length = 162 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 11 IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + L++ A H P Q+A + + + + + L + G+V + +G GG RL Sbjct: 11 LHALLHMAEHEARTGAPMTSDQLAVCLSTNPVVVRRTMAGLREQGLVASEKGHGGGWRLA 70 Query: 68 RPADQITILDVVKATEESFFVAEC 91 RP DQ+T+ V A E E Sbjct: 71 RPLDQVTLGQVNTALGEPGLFPEA 94 >gi|220911591|ref|YP_002486900.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Arthrobacter chlorophenolicus A6] gi|219858469|gb|ACL38811.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] Length = 161 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R LM A +Q IA++ + K + L G+++ RG Sbjct: 1 MKINAFADVSLRALMVLAAAPGNQLLTTQNIADSVGTPYNHVSKAMARLRTMGLIDVERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL T+ +++ + A+C A+ +CPL+ C L + L +A AF+ Sbjct: 61 RTGGSRLSSAGRTATVGQILRELDTRTDPADCMAATG-NCPLINECKLRAALARAREAFY 119 Query: 120 DVLTQYSIECLVRNR 134 L I L +R Sbjct: 120 RELDPVVIANLPGSR 134 >gi|326406059|gb|ADZ63130.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 156 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A +S +L KI++ LV G++ + G+ GG L + I+ DV A E Sbjct: 31 LANRLKVSPSYLKKIIKSLVDEGLLRSTPGKNGGFSLNKDLHDISFYDVFLAIEGR---G 87 Query: 90 ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127 F S + +GS C +TS L + N L+ S+ Sbjct: 88 RIFQSQGLLQNFIGSESGKAKRCAITSALDEIENTLVRTLSNVSL 132 >gi|281491024|ref|YP_003353004.1| Rrf2 family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374782|gb|ADA64302.1| Transcriptional regulator, Rrf2 family [Lactococcus lactis subsp. lactis KF147] Length = 156 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A +S +L KI++ LV G++ + G+ GG L + I+ DV A E Sbjct: 31 LANRLKVSPSYLKKIIKSLVDEGLLRSTPGKNGGFSLNKDLHDISFYDVFLAIEGR---G 87 Query: 90 ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127 F S + +GS C +TS L + N L+ S+ Sbjct: 88 RIFQSQGLLQNFIGSESGKATRCAITSALDEIENTLVRTLSNVSL 132 >gi|311030960|ref|ZP_07709050.1| transcriptional regulator, BadM/Rrf2 family protein [Bacillus sp. m3-13] Length = 137 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF- 87 ++AE +FL KIL+ LVK +++ GR GG L + +I + +V A + F Sbjct: 32 ELAEKLNSKSVFLRKILRHLVKTELIQAKEGRDGGYFLVKDPSEIKLSEVYDAMKAETFP 91 Query: 88 -------VAECFAS 94 ECFAS Sbjct: 92 KGFFNVESKECFAS 105 >gi|290579608|ref|YP_003484000.1| hypothetical protein SmuNN2025_0082 [Streptococcus mutans NN2025] gi|254996507|dbj|BAH87108.1| hypothetical protein [Streptococcus mutans NN2025] Length = 157 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ + D SQ ++ S +L KI++ LV G++ ++ G Sbjct: 1 MKLSSGWEQSVYVLLILSQLPDSKTINSQSLSLRLGTSHSYLKKIIKLLVNEGLITSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103 + GG L + + IT DV A E + FAS ++ +G Sbjct: 61 KYGGFSLAKSLEDITFYDVFIAVEGR---GKIFASQQLLKKFLG 101 >gi|226952787|ref|ZP_03823251.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226836490|gb|EEH68873.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 139 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%) Query: 14 LMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++ +H N+I +IA + + + + + L AG +++V+G +GG L Sbjct: 1 MLHVLLHMARQNKIFTSEEIAHMLSTNAVVVRRTMAGLKNAGFIQSVKGPKGGWHLIADL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 ++ T+LD+ A E A ++ + P CG+ V+ +AL Sbjct: 61 EKTTLLDIYNAVGEPTIFA---IGNERENP---ECGVERVVNEAL 99 >gi|331266849|ref|YP_004326479.1| Rrf2 family protein; transcriptional regulator,putative [Streptococcus oralis Uo5] gi|326683521|emb|CBZ01139.1| Rrf2 family protein; transcriptional regulator,putative [Streptococcus oralis Uo5] Length = 145 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R +++ A+ D ++++ +A + ++ + + K L L KAG++ R Sbjct: 1 MQISSRFTIATHMMIIIAMQ-DTESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115 G GG + + I++LDV +A E + F+ H +CP+ + VL + L Sbjct: 60 G-TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHGVLDQKL 116 Query: 116 NAFFDVLTQYSIECLVRNRS 135 FDV Q ++E +R S Sbjct: 117 ---FDV--QAAMENQLRQTS 131 >gi|294650114|ref|ZP_06727497.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|292824021|gb|EFF82841.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 139 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%) Query: 14 LMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++ +H N+I +IA + + + + + L AG++++V+G +GG L Sbjct: 1 MLHVLLHMARQNKIFTSEEIAHMLSTNAVVVRRTMAGLKNAGLIQSVKGPKGGWHLIADL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 ++ T+LD+ A E A ++ + P CG+ V+ AL Sbjct: 61 EKTTLLDIYNAVGEPTIFA---IGNERENP---ECGVERVVNAAL 99 >gi|317406169|gb|EFV86423.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 148 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 11/110 (10%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R+D + +++ +H D P I + + + + +++ L + G V++ +G G Sbjct: 2 RSDNRLSRMLHVLLHMAEQDAPLTSETIGKMLNTNPVVVRRMMSGLRERGYVQSEKGHGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVA--------ECFASHKIDCPLVGS 104 G L RP ++T+LDV +A E A +C ++ L G+ Sbjct: 62 GWVLTRPLAELTLLDVYQALGEPPIFALGLDQSEPKCLVEQAVNAGLEGA 111 >gi|154244034|ref|YP_001414992.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158119|gb|ABS65335.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 146 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 28/43 (65%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 L +LQ LV AG+++ VRG RGG L R ++++ ++V+ E Sbjct: 43 LEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRVVE 85 >gi|311745462|ref|ZP_07719247.1| Rrf2 family protein [Algoriphagus sp. PR1] gi|126578014|gb|EAZ82234.1| Rrf2 family protein [Algoriphagus sp. PR1] Length = 138 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y + L Y H D I +IAE IS FL IL L KAG++ + +G+ Sbjct: 2 LSKKTKYALHALTYLGKHKDEKTVLIHEIAEEHGISHKFLENILLELKKAGLLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + I + V++ + + C + + +C CG+ VL K + Sbjct: 62 GGYYLIKEPKDIPLSKVIRLLDGPIALLPCVSLNYYEPCDECKNEAQCGINKVLIKVRDE 121 Query: 118 FFDVLTQYSIECLVR 132 +L ++E +++ Sbjct: 122 TLKILENKTLEDILK 136 >gi|294791271|ref|ZP_06756428.1| Rrf2 family protein [Scardovia inopinata F0304] gi|294457742|gb|EFG26096.1| Rrf2 family protein [Scardovia inopinata F0304] Length = 150 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 11 IRVLMYCAI-HNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +++Y AI HN P++++ IA++ + + KI+ L KAG++ + RG+ V + Sbjct: 15 VHIMLYLAIKHN--PDQLTSEAIAQSVNTNPSAVRKIMSNLKKAGLISSHRGKADPV-II 71 Query: 68 RPADQITILDV 78 RP IT+LD+ Sbjct: 72 RPLKDITLLDI 82 >gi|228990968|ref|ZP_04150931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228997055|ref|ZP_04156686.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|229004710|ref|ZP_04162447.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228756598|gb|EEM05906.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228762680|gb|EEM11596.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|228768748|gb|EEM17348.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] Length = 144 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87 IAE+ + + + KI+ L +A V RG GG L + ++IT+LDV A E+ Sbjct: 31 IAESVNTNPVVIRKIMSDLKRAEFVYVNRGP-GGAELLKDLNEITLLDVYHAVNVVEADK 89 Query: 88 VAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130 + DCP+ + L VL +A +A +VL ++E L Sbjct: 90 LFHIHEQPNPDCPIGANIQAVLEVVLVQAQSAMEEVLKNITMENL 134 >gi|163785917|ref|ZP_02180365.1| transcriptional regulator, BadM/Rrf2 family protein [Flavobacteriales bacterium ALC-1] gi|159877777|gb|EDP71833.1| transcriptional regulator, BadM/Rrf2 family protein [Flavobacteriales bacterium ALC-1] Length = 144 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGI+ +Y A ++ R+S +IA+ F KILQ LV+ I+ +V+G Sbjct: 2 FSKACEYGIKATIYIATNSYEKKRVSLKEIAKEIDSPVAFTAKILQDLVRHQIINSVQGA 61 Query: 61 RGGVRL 66 GG + Sbjct: 62 YGGFEI 67 >gi|225018040|ref|ZP_03707232.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum DSM 5476] gi|224949186|gb|EEG30395.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum DSM 5476] Length = 153 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + L++ + ++ ++A + + + + K+L L KAG++E G Sbjct: 1 MKISSRFTVAVHCLLFISCSDEKITS-EKLAASVNTNPVVIRKVLGKLKKAGLIEVYSGT 59 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GG L +PA IT+LD+ A + Sbjct: 60 -GGAALLKPASSITLLDIFHAAD 81 >gi|254524248|ref|ZP_05136303.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp. SKA14] gi|219721839|gb|EED40364.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp. SKA14] Length = 151 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 37/88 (42%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 +M + P Q+A + + ++L L KAG+V + RG GG +L R A I Sbjct: 13 VMAHLVGQSAPRTSEQLASCLPTHPVVIRRLLAQLHKAGLVHSARGHGGGSQLARDAATI 72 Query: 74 TILDVVKATEESFFVAECFASHKIDCPL 101 T+ D+ A V CP+ Sbjct: 73 TLHDIYLAVGAPPLVQVGTRGSGGGCPI 100 >gi|167755523|ref|ZP_02427650.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402] gi|167704462|gb|EDS19041.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402] Length = 167 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + L TDY IR+++Y AI D +++E I + +FKI + L I+ G Sbjct: 37 VQLKVSTDYAIRIVLYIAIKKDIVQS-KELSETLGIPQSTVFKIGKKLSDNEIISIATGI 95 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 +GG +L + I+I ++ E + + C K Sbjct: 96 QGGFKLKKHPKDISIFSIIDIFEPTIRINSCLEEDK 131 >gi|83952084|ref|ZP_00960816.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius nubinhibens ISM] gi|83837090|gb|EAP76387.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius nubinhibens ISM] Length = 143 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 IS +L ++ L +A +V +VRG GG RL RP +I + +++ A +E+ Sbjct: 27 ISLPYLEQLFVKLRRAELVASVRGPGGGYRLARPPSEIRVAEILAAVDET 76 >gi|226322283|ref|ZP_03797801.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758] gi|225209313|gb|EEG91667.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758] Length = 152 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 ++A+ C + + + +++ L KAG++ET G GG R+ + IT+ + A E + Sbjct: 26 ELADNVCTNPVCIRRVMGKLKKAGLIETREGMGGGYRIAKVNSDITLRQISDALENTLVK 85 Query: 89 AECFASHKIDCPLVGSCGLTSV-------LRKALNAFFDVLTQYSIE 128 A + + LV S G++ V + ++ N + + +T +E Sbjct: 86 ASWRSGNPDKKCLVAS-GMSVVMDELVTGMNRSCNDYLERITIQKVE 131 >gi|295689542|ref|YP_003593235.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431445|gb|ADG10617.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis ATCC 21756] Length = 158 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ + Y + + A D +++IA IS +L ++ L + G+V + Sbjct: 1 MRLSTKGRYAVMAMTDLAKRQDEGEGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 RG GG RL + + + I D+V A +E C Sbjct: 61 ARGPGGGYRLAKASTETFIADIVLAVDEPLRATRC 95 >gi|237748113|ref|ZP_04578593.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229379475|gb|EEO29566.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 146 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + Y +++++ A+ + D I+ I+ IS L + + L AG++ET G Sbjct: 6 MRIATKERYALKLMVDLALQDKDEYISINSISTRQGISIASLRAVARALTAAGLIETNTG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 RL R A QI I ++++AT+ F C Sbjct: 66 HLYHYRLNRDAAQIPIPEILRATDGKFACTAC 97 >gi|75760212|ref|ZP_00740268.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492298|gb|EAO55458.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 149 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 4 TKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 T +D+ I L Y A+ D + + I+E+ + + + K+L L K +++ G Sbjct: 12 TMNSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTG 71 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R ++ + + + T E +C S+ C + S +RK L A F Sbjct: 72 GGFIFARDLGEVNLWHIYQITSEGALQPKCPESND-------QCVVGSNMRKVLFAIF 122 >gi|158422332|ref|YP_001523624.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329221|dbj|BAF86706.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 146 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 28/43 (65%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 L +LQ LV AG+++ VRG RGG L R ++++ ++V+ E Sbjct: 43 LEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRVVE 85 >gi|58579092|ref|YP_197304.1| hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str. Welgevonden] gi|58417718|emb|CAI26922.1| Hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str. Welgevonden] Length = 160 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 47/111 (42%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R+S IA +SE +L +++ L K G++ +G GG L IT+ ++++ Sbjct: 34 PVRMSYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESIG 93 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 E+ + C + C + N D L S+E +V N Sbjct: 94 ENIKITRCENNSPGCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNN 144 >gi|325263527|ref|ZP_08130261.1| transcriptional regulator superfamily [Clostridium sp. D5] gi|324031236|gb|EGB92517.1| transcriptional regulator superfamily [Clostridium sp. D5] Length = 137 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE C + + KI+ L KAG+VET G GG + +++ + + A E S FV+ Sbjct: 27 LAENICTNAARIRKIMVKLKKAGLVETKEGIEGGYLFVKNSEETDLCTIADALEFS-FVS 85 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALN 116 + S + + + G+ V+ N Sbjct: 86 SGWKSGSSELKCLIASGMAGVMEDVYN 112 >gi|182413404|ref|YP_001818470.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1] gi|177840618|gb|ACB74870.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae PB90-1] Length = 151 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 ++IA + + + + ++L L KAG+V +G GG + + IT+LDV +A E + Sbjct: 28 AEIARSVDTNPVVIRRLLSALAKAGLVTAHKGATGGFAIAAAPEAITLLDVYRAVEPA 85 >gi|270290058|ref|ZP_06196284.1| transcription regulator [Pediococcus acidilactici 7_4] gi|270281595|gb|EFA27427.1| transcription regulator [Pediococcus acidilactici 7_4] Length = 168 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R I VL Y AI H+ P IA + + + +I+ L KAG+++T G Sbjct: 11 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 + L R +QI++LD+ + +E+ Sbjct: 71 KPQPA-LTRAPEQISLLDIFNSLDEA 95 >gi|325519578|gb|EGC98937.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. TJI49] Length = 105 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 72 QITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 ++T+ +VV+ATE F + CFA+ C + C L VL A +AFF L ++++ Sbjct: 9 RLTVGEVVRATEADFALVGCFAADAGSRGCVIEPQCRLKGVLAAARDAFFAELDRHTLGE 68 Query: 130 LVRNRSSIKKIFN 142 L SS+ + Sbjct: 69 LAAPASSLVSLLG 81 >gi|304385691|ref|ZP_07368035.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328195|gb|EFL95417.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 160 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R I VL Y AI H+ P IA + + + +I+ L KAG+++T G Sbjct: 3 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEES 85 + L R +QI++LD+ + +E+ Sbjct: 63 KPQPA-LTRAPEQISLLDIFNSLDEA 87 >gi|126731918|ref|ZP_01747722.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37] gi|126707745|gb|EBA06807.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37] Length = 115 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 D P +IA + + + L L +AG++ + +G GG L RP +I++LD+ A Sbjct: 2 DRPATSEEIAAMLGTNATVVRRTLAGLREAGLLSSTKGHGGGWSLSRPLTEISLLDLYSA 61 Query: 82 --TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + E F +A A + L A F + L ++ +VR Sbjct: 62 LGSPELFAIAPDEAQPACLLARAANAATNDALHAAREVFEERLKALTVAEIVR 114 >gi|42782474|ref|NP_979721.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|42738400|gb|AAS42329.1| rrf2 family protein [Bacillus cereus ATCC 10987] Length = 137 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++ + + + T E +C S+ C + S +RK L A F Sbjct: 69 SEVNLWHIYQITSEGALQPKCPESNN-------QCIVGSNMRKVLFAIF 110 >gi|315651088|ref|ZP_07904122.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486678|gb|EFU77026.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 144 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 N+Y +A + + + + KIL L AG++ RG GGV + RP ++IT DV + Sbjct: 22 NEYKITSDFLAGSINTNPVIIRKILSQLKNAGLIMVARGT-GGVEITRPLNEITFYDVYE 80 Query: 81 ATE 83 A + Sbjct: 81 AID 83 >gi|57239141|ref|YP_180277.1| hypothetical protein Erum4120 [Ehrlichia ruminantium str. Welgevonden] gi|57161220|emb|CAH58136.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 156 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 47/111 (42%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R+S IA +SE +L +++ L K G++ +G GG L IT+ ++++ Sbjct: 30 PVRMSYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESIG 89 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 E+ + C + C + N D L S+E +V N Sbjct: 90 ENIKITRCENNSPGCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNN 140 >gi|218898464|ref|YP_002446875.1| rrf2 family protein [Bacillus cereus G9842] gi|218543993|gb|ACK96387.1| rrf2 family protein [Bacillus cereus G9842] Length = 137 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++ + + + T E +C S+ C + S +RK L A F Sbjct: 69 GEVNLWHIYQITSEGALQPKCPESND-------QCVVGSNMRKVLFAIF 110 >gi|114768830|ref|ZP_01446456.1| Rrf2 family transcriptional regulator [alpha proteobacterium HTCC2255] gi|114549747|gb|EAU52628.1| Rrf2 family transcriptional regulator [alpha proteobacterium HTCC2255] Length = 153 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ AI + + +I++ IS +L ++ L + I+ +VRG Sbjct: 1 MKLSTKGRYAMIALVDLAIEGEKGLVSLGEISDRQNISLNYLEQLFLKLRRKEIITSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 GG +L + A+ I + D++ A +E Sbjct: 61 PGGGYKLAKSAEAIRVSDILTAVDEDM 87 >gi|86131704|ref|ZP_01050301.1| transcriptional regulator [Dokdonia donghaensis MED134] gi|85817526|gb|EAQ38700.1| transcriptional regulator [Dokdonia donghaensis MED134] Length = 135 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T YG++ L + A + I +IA++ IS+ FL IL + KAG + + +G+ Sbjct: 2 LSRKTKYGLKALTFLAKKPENTTVLIQEIADSENISKKFLESILLSMRKAGYLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + I I V++ E + C F H DCP C L ++ + + Sbjct: 62 GGYYLIKSPEDIKISSVIRTLEGPIALLPCVSLNFYEHCDDCPKEEECSLHILMIEVRDQ 121 Query: 118 FFDVLTQYSI 127 VL S+ Sbjct: 122 TLKVLENKSL 131 >gi|86138298|ref|ZP_01056872.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. MED193] gi|85824823|gb|EAQ45024.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. MED193] Length = 153 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + I++ IS +L ++ L +A +V +VRG GG RL R +I ++D++ A +E+ Sbjct: 28 LGDISKRQNISLPYLEQLFVKLRRAELVASVRGPGGGYRLARRPSEIRVVDILSAVDET- 86 Query: 87 FVAECFASHKIDCPLVGSCGLTS 109 A HK G+ G TS Sbjct: 87 ----VDAMHKG----AGASGATS 101 >gi|304407124|ref|ZP_07388778.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304344111|gb|EFM09951.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 139 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + + + + +I+ L KAG++E+ R G++L RP + IT LDV +A E V Sbjct: 28 IAGSVNTNPVVIRRIMSLLSKAGLIES-RPGVTGMKLVRPLESITFLDVYRAVE----VP 82 Query: 90 E---CFASHKIDCP 100 E FA H+ P Sbjct: 83 ENDVLFAIHQNSNP 96 >gi|251798939|ref|YP_003013670.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247546565|gb|ACT03584.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 166 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 15/113 (13%) Query: 27 ISQIAEACCISEL---------FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 +S+ AC +EL L ++L L + ++ET GR GG RL R + IT+ D Sbjct: 38 LSRKPNACTSAELAGHMKSEATMLRRVLAKLAREQLLETREGRDGGYRLKRAPETITLAD 97 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 V A V E S +D + G +R A D + + ++E L Sbjct: 98 VYLA----LRVGEPLCSGMLDTTGIHDFG--QEMRVAFMEITDEVERRTLEVL 144 >gi|159185735|ref|NP_357183.2| hypothetical protein Atu3423 [Agrobacterium tumefaciens str. C58] gi|159140869|gb|AAK89968.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 149 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 5/147 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + +++IA I + FL IL L +GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSKLPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 +L ++ V ++ AG Sbjct: 122 IATILDNMTLAQFVAKDGQDQRSIPAG 148 >gi|322419199|ref|YP_004198422.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320125586|gb|ADW13146.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 153 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A I + FL IL L +GI+++ +G+ Sbjct: 2 ISKKTKYGLKALIYLARKYDKGPILIADLARDENIPKKFLEAILLSLKNSGILQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L R IT ++ + C + +C SCG+ V++ +A Sbjct: 62 GGYYLGRNPKDITFGQAIRVMDGPLAPVPCVSESAYAECRECHDEFSCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSI 127 +L + S+ Sbjct: 122 MASILDRTSL 131 >gi|172056218|ref|YP_001812678.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171988739|gb|ACB59661.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 160 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 4/131 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +++ Y + +L + P I++ S + K+L+ LV A ++ +V G +GG Sbjct: 8 EQSVYAMLLLTFLPEKGVLPGEF--ISQQLGASPTYFQKLLRKLVSADLLISVPGAKGGF 65 Query: 65 RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 RL + I + D+ +A E +S + + + C L+ ++ +A ++ +L Sbjct: 66 RLKASPETIRVFDIYEAIEGKQSLYASSGVFEDLMGIQDQNICLLSDLMAEAEQSWQSIL 125 Query: 123 TQYSIECLVRN 133 + +I+ + R Sbjct: 126 KRETIDSIRRE 136 >gi|238926642|ref|ZP_04658402.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238885588|gb|EEQ49226.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 156 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 +IL L +AG++ RGR GG + + IT+ D+ +A ES F+ H+ P Sbjct: 55 RILGQLRRAGLITVARGREGGAHIAKELTDITLADIFRAV-ESISGQSLFSFHENPNP 111 >gi|242372820|ref|ZP_04818394.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349472|gb|EES41073.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 143 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I VL + H D ++AE C++ + L +++ L + TVRG+ GG + + Sbjct: 8 AIHVLTFLTKHKDEKFNSKELAELTCLNPVQLRRVVSVLSDQHYITTVRGKGGGYQSNQH 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIE 128 + + AT FV + H+I S C ++ + ++ ++D Q I Sbjct: 68 TASVNL-----ATLYQQFVLNKESKHRIYTGDTSSHCDISKHIAHTMSDYYDEEIQL-IL 121 Query: 129 CLVRNRSSIKKIFN 142 RN+ +I+ + N Sbjct: 122 NFYRNK-TIQDVLN 134 >gi|308071262|ref|YP_003872867.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305860541|gb|ADM72329.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 157 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 ++L LV+A ++ GR GG L R AD IT+ D+ A E Sbjct: 50 RVLTRLVQADLIAAREGREGGYVLTRSADHITLADIYHAIE 90 >gi|295401043|ref|ZP_06811017.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312112181|ref|YP_003990497.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294976836|gb|EFG52440.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311217282|gb|ADP75886.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 146 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L A+ + IA + + + + +++ L KAG V+ VR Sbjct: 1 MKISSRFTVAVHILALLALEKNAHCTSEWIAGSVNTNPVVVRRVIGQLKKAGFVQ-VRPG 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115 GG L + +IT+LD+ +A E E F H+ CP+ + L +L +A Sbjct: 60 TGGAFLTKDTQEITLLDIYRAV-EVVEEGELFQIHEHPNPQCPVGANIQAVLEVILHRAQ 118 Query: 116 NAFFDVLTQYSIECLV 131 A +VL + + +V Sbjct: 119 AAMENVLQEIRLHDIV 134 >gi|310644495|ref|YP_003949254.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249446|gb|ADO59013.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 165 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 ++L LV+A ++ GR GG L R AD IT+ D+ A E Sbjct: 50 RVLTRLVQADLIAAREGREGGYVLTRSADHITLADIYHAIE 90 >gi|224541787|ref|ZP_03682326.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM 15897] gi|224525284|gb|EEF94389.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM 15897] Length = 140 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 7 TDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +D+ I V L+Y + D + ++A+ C + + +++ L +AG+++ G GG Sbjct: 8 SDFSIAVHALVYLGKNQDLISS-DELAKHICTHPVRVRRVMIKLREAGLIKAKAGVDGGY 66 Query: 65 RLCRPADQITILDVVKATEESFF 87 RL + AD IT+ ++ K+ + Sbjct: 67 RLDKEADDITLSEIAKSVSNDYI 89 >gi|57239143|ref|YP_180279.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden] gi|57161222|emb|CAH58138.1| hypothetical protein Erum4140 [Ehrlichia ruminantium str. Welgevonden] Length = 522 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 1 MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ C N P R+S IA +SE +L +++ L K G++ Sbjct: 1 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +G GG L IT+ ++++ E+ + C Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 97 >gi|262066052|ref|ZP_06025664.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693] gi|291380302|gb|EFE87820.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693] Length = 144 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 NDY +A + + + + KIL L AG++ RG GG+ RP +I+ DV + Sbjct: 22 NDYKITSDFLARSINTNPVIIRKILTQLKNAGLITVARG-TGGISPTRPLKEISFYDVYQ 80 Query: 81 ATE 83 A E Sbjct: 81 AIE 83 >gi|15919268|gb|AAL10759.1|AF338108_1 hypothetical iron-sulfur cofactor synthesis protein 1 [Ehrlichia ruminantium] Length = 522 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 1 MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ C N P R+S IA +SE +L +++ L K G++ Sbjct: 1 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +G GG L IT+ ++++ E+ + C Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 97 >gi|58579094|ref|YP_197306.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden] gi|58417720|emb|CAI26924.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia ruminantium str. Welgevonden] Length = 526 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 1 MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ C N P R+S IA +SE +L +++ L K G++ Sbjct: 5 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +G GG L IT+ ++++ E+ + C Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 101 >gi|332716226|ref|YP_004443692.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325062911|gb|ADY66601.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 149 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 5/147 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + +++IA I + FL IL L +GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSKMPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 +L ++ V + AG Sbjct: 122 IATILDNMTLAQFVAKGGQDAQFIPAG 148 >gi|163789536|ref|ZP_02183974.1| Rrf2 family protein [Carnobacterium sp. AT7] gi|159875068|gb|EDP69134.1| Rrf2 family protein [Carnobacterium sp. AT7] Length = 156 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 12/141 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVR 58 M LTK + + +L + +++ S + + S ++ KI++ LV +G+ ++ Sbjct: 1 MKLTKGLEQAVCILAMLSTQDNHILITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE-------ESFFVAECFASHKIDCPLV-GSCGLTSV 110 G GG L + ++I +L++V+A E S + + F+ I P G LT+ Sbjct: 61 GSNGGFMLAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSD--IGEPASNGEKMLTTT 118 Query: 111 LRKALNAFFDVLTQYSIECLV 131 +A + L Q ++ L+ Sbjct: 119 FGEADKRYTSFLEQQTLNQLI 139 >gi|147677388|ref|YP_001211603.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146273485|dbj|BAF59234.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 123 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 KAG+V +VRG +GG L R +IT+ DV++A E C + Sbjct: 20 KAGLVRSVRGAQGGYILAREPAEITVGDVIRALEGPIAPVSCVSEE 65 >gi|317056951|ref|YP_004105418.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315449220|gb|ADU22784.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 145 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT----EESFFVAEC 91 ++ + + +L L AGIVET +G GG L + D+IT+ D+ KA +E F Sbjct: 37 VNAVIVRNVLGQLRTAGIVETRQGS-GGAHLAKALDEITLYDIYKAVDCVDDEGLF--HF 93 Query: 92 FASHKIDCPL 101 + DCP+ Sbjct: 94 HENPNADCPV 103 >gi|312112835|ref|YP_004010431.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311217964|gb|ADP69332.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 149 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 IAE IS L K+L+ L + GIV+ RG GG R ++T+ D++ Sbjct: 30 IAEKYAISPNHLAKVLRTLGREGIVDASRGVGGGYRFVGNPKRLTLFDII 79 >gi|58617151|ref|YP_196350.1| cysteine desulfurase [Ehrlichia ruminantium str. Gardel] gi|58416763|emb|CAI27876.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia ruminantium str. Gardel] Length = 526 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 1 MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ C N P R+S IA +SE +L +++ L K G++ Sbjct: 5 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 +G GG L IT+ ++++ E+ + C Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 101 >gi|184155425|ref|YP_001843765.1| transcription regulator [Lactobacillus fermentum IFO 3956] gi|183226769|dbj|BAG27285.1| transcription regulator [Lactobacillus fermentum IFO 3956] Length = 149 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R GI +L + ++ + ++ + IS + + +++ L +AG+V+T +G Sbjct: 1 MRASTRFSDGIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEES 85 RL R +IT+ DV A EES Sbjct: 60 TAQPRLARDLQKITLYDVYLAVEES 84 >gi|78046202|ref|YP_362377.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034632|emb|CAJ22277.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 157 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ +H + P QIA + + + + + L AG V++ RG G Sbjct: 2 RTDSRLSRMLHVLLHMARSPQPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHNG 61 Query: 63 GVRLCRPADQITILDVVKA 81 G ++ Q+T+LDV +A Sbjct: 62 GWQIGCDLAQVTLLDVHRA 80 >gi|325928913|ref|ZP_08190075.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] gi|325540709|gb|EGD12289.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] Length = 157 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RTD + +++ +H + P QIA + + + + + L AG V++ RG G Sbjct: 2 RTDSRLSRMLHVLLHMARSPQPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHNG 61 Query: 63 GVRLCRPADQITILDVVKA 81 G ++ Q+T+LDV +A Sbjct: 62 GWQIGCDLAQVTLLDVHRA 80 >gi|228475630|ref|ZP_04060348.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis SK119] gi|228270412|gb|EEK11847.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis SK119] Length = 160 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC----ISELFLFKILQPLVKAGIVET 56 M L+ + I VL+ I N P + + A +S+ +L KI++ LVK +V + Sbjct: 1 MKLSTGWEQAIYVLL---ILNQLPRQSVMTSTALSKRLKVSDSYLKKIVKALVKENLVYS 57 Query: 57 VRGRRGGVRLCRPADQITILDVVKATE 83 G+ GG L + IT DV A E Sbjct: 58 TTGKNGGFTLRKKLKDITFYDVFLAIE 84 >gi|293364946|ref|ZP_06611663.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307703197|ref|ZP_07640143.1| transcriptional regulator family protein [Streptococcus oralis ATCC 35037] gi|291316396|gb|EFE56832.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307623272|gb|EFO02263.1| transcriptional regulator family protein [Streptococcus oralis ATCC 35037] Length = 145 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 12/126 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R +++ A+ D ++++ +A + ++ + + K L L KAG++ R Sbjct: 1 MQISSRFTIATHMMIIIAMQ-DTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115 G GG + + +I++LDV +A E + F+ H +CP+ + VL + L Sbjct: 60 G-TGGTEIIKDLQEISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHGVLDQKL 116 Query: 116 NAFFDV 121 FDV Sbjct: 117 ---FDV 119 >gi|194335315|ref|YP_002017109.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] gi|194307792|gb|ACF42492.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] Length = 154 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 45/95 (47%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LTK TDY IR L+ A IA I FL +LQ +++ ++ + G +G Sbjct: 4 LTKNTDYAIRALLALAARKGSYVSARSIATEHDIPYQFLRGLLQEMIRHDLIVSKEGVQG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 G + + D I++ +++ + ++EC +I Sbjct: 64 GFMMKKDPDTISVTQLIEIFQGKVQMSECMFRKQI 98 >gi|218462085|ref|ZP_03502176.1| putative transcriptional regulator protein [Rhizobium etli Kim 5] Length = 117 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 25/33 (75%) Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 AGI++TV G RGG +L + ++I++LD++ A E Sbjct: 3 AGILDTVPGPRGGYKLAKAPEEISLLDILLAVE 35 >gi|225569272|ref|ZP_03778297.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM 15053] gi|225571816|ref|ZP_03780686.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM 15053] gi|225159528|gb|EEG72147.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM 15053] gi|225162071|gb|EEG74690.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM 15053] Length = 143 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H D ++AE C + + K++ L K +V T G +GG + A +T+ V Sbjct: 17 HKDTVVSSEELAENICTNPARVRKVMAKLKKKALVGTKEGIKGGYHMAADASAVTLRCVC 76 Query: 80 KATEESFFVAEC-FASHKIDCPLV-GSCGLTSVLRKALNAF-FDVLTQYSIE 128 A EE A S +DC + G G+ + +NA D L +IE Sbjct: 77 DALEEEVIKASWKSGSIDMDCMIASGMAGMMDGIYSEMNAQCKDYLETVTIE 128 >gi|322387140|ref|ZP_08060750.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321141669|gb|EFX37164.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 143 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S +A + ++ + + K L L KA ++ RG Sbjct: 1 MQISSRFTIATHMLVIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKADLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKA 114 GG + + + I++LD+ +A E + F+ H DCP+ + L L K Sbjct: 61 T-GGAEIIKELEDISLLDIYQAVECLGKTGQLFSFHDNPNPDCPVGANIHGVLDEKLDKI 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A + L+Q S+ +V + Sbjct: 120 QEAMEEELSQTSLARVVAD 138 >gi|52142135|ref|YP_084695.1| transcriptional regulator [Bacillus cereus E33L] gi|51975604|gb|AAU17154.1| possible transcriptional regulator (rrf2 family protein) [Bacillus cereus E33L] Length = 137 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +++ + + + T E +C S+ C + S +RK L F Sbjct: 69 EEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110 >gi|170754322|ref|YP_001780964.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169119534|gb|ACA43370.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] Length = 137 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ DY +RV+++ + Y R+ I+E + FL K+L+ L K+GIV + R Sbjct: 1 MKITQEADYALRVILHLS-KLGYGERVEARIISEQEVLPLRFLLKLLRKLTKSGIVVSFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 G +GG L + I + DV++A + + C Sbjct: 60 GVKGGYALNKQPKDINLKDVIEAIDGPICINRCI 93 >gi|15893411|ref|NP_346760.1| hypothetical protein CA_C0115 [Clostridium acetobutylicum ATCC 824] gi|15022941|gb|AAK78100.1|AE007524_5 Uncharacterized protein, Yje/RRF2 family [Clostridium acetobutylicum ATCC 824] gi|325507523|gb|ADZ19159.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 137 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ DY +RV++Y + Y +I + IAE + FL K+L+ L+K+GIV++ R Sbjct: 1 MRITQEADYSMRVVLYLSKLG-YEQKIDAATIAEHEKLPLRFLLKLLRKLIKSGIVKSYR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 G +GG L + I + +V++A + V C Sbjct: 60 GVKGGYALNKYPKDINLREVIEAIDGPICVNRCLTD 95 >gi|313899650|ref|ZP_07833153.1| transcriptional regulator [Clostridium sp. HGF2] gi|312955265|gb|EFR36930.1| transcriptional regulator [Clostridium sp. HGF2] Length = 145 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H + ++A++ C + + K++ L KAG++ET G GG L A I + D+ Sbjct: 17 HRNTKVSSEELAKSICTNPARIRKVMAKLKKAGLLETREGNSGGYELHGDAAAIRLSDLA 76 Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNAF-FDVLTQYSIE 128 +A ++ + S ++ + + G+ +V L +LN L+Q +IE Sbjct: 77 QALQQP-LTKSGWRSGTLNTYCMIATGMGTVVDTLEASLNEVCMQSLSQITIE 128 >gi|229140014|ref|ZP_04268577.1| Rrf2 [Bacillus cereus BDRD-ST26] gi|228643420|gb|EEK99688.1| Rrf2 [Bacillus cereus BDRD-ST26] Length = 116 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 I+E+ C+ + + K+L L K +++ G GG R D++ + + + T E Sbjct: 7 ISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSEGALQP 66 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +C S+ C + S +RK L F Sbjct: 67 KCPESND-------QCIVGSNMRKVLFTIF 89 >gi|319795510|ref|YP_004157150.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus EPS] gi|315597973|gb|ADU39039.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus EPS] Length = 181 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H P ++ I+ +S +L + L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDIALHGRSGPVTLASISLRQRVSLSYLELLFAKLRRNDLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 GG L R A I++ D+V + E+ Sbjct: 61 PGGGYSLSRKAALISVADIVLSIED 85 >gi|56962182|ref|YP_173905.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908417|dbj|BAD62944.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 303 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLC----RPADQITILDVVK 80 I ++AE+ +S + K +Q L KAG+++T VRG+ G ++C R A QI + Sbjct: 37 IKELAESQQVSSAIMTKHVQKLEKAGLIDTTHVRGKAGVQKMCSLRVRHA-QIAFPNKEN 95 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTS 109 +F + H D + +CGL + Sbjct: 96 GPTRAFHESHVSVGHFTDFYVEPTCGLAT 124 >gi|167646548|ref|YP_001684211.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167348978|gb|ABZ71713.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 159 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-----RISQIAEACCISELFLFKILQPLVKAGIVE 55 M L+ + Y + + A D +++IA IS +L ++ L + G+V Sbjct: 1 MRLSTKGRYAVMAMTDLARRQDEAEGGRAVALAEIAARQQISLSYLEQLFARLRRKGLVV 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 + RG GG RL Q I D+V A +E C S Sbjct: 61 SARGPGGGYRLALDPAQTRISDIVLAVDEPLRATRCGLS 99 >gi|302875321|ref|YP_003843954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307688174|ref|ZP_07630620.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302578178|gb|ADL52190.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 143 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ ++ A ++ + I I E +SE +L +I L K GI+ +G Sbjct: 1 MKISTKGIYGLKAIVDLACYSVNEVVTIKSICERQGLSERYLEQIFSLLRKNGIIVGRKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE 83 +GG L + ++T+ +++ A E Sbjct: 61 SQGGYTLAKKPKELTVYEILTALE 84 >gi|125623396|ref|YP_001031879.1| putative transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|806485|gb|AAC41452.1| ORF156 [Lactococcus lactis subsp. cremoris] gi|124492204|emb|CAL97133.1| putative transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300070144|gb|ADJ59544.1| putative transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 156 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 10/105 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A +S +L KI++ LV G++ + G+ GG L + I+ DV A E Sbjct: 31 LANRLKVSPSYLKKIIKSLVDEGLLRSTTGKNGGFSLNKDLHDISFYDVFLAIEGR---G 87 Query: 90 ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127 F S + +G+ C +T+ L + N L+ S+ Sbjct: 88 RIFQSQGLLQNFIGAESGKAQHCAITTALDEIENTLVRTLSNVSL 132 >gi|28379895|ref|NP_786787.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254558035|ref|YP_003064452.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300769029|ref|ZP_07078919.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308182109|ref|YP_003926237.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272736|emb|CAD65665.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|83778489|gb|ABC47132.1| putative transcriptional regulator [Lactobacillus plantarum] gi|254046962|gb|ACT63755.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300493441|gb|EFK28619.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047600|gb|ADO00144.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 141 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 11/112 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ Y A+H D + IA + + +++ L KAG++ +VRG C P Sbjct: 9 ATHIMAYIALHTDDQLKSEHIASSLNTDPTMVRRMMSKLRKAGLLTSVRGVARPTLACSP 68 Query: 70 ADQITILDVVKA--TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 D IT+ D+ A + +F +D +C + SV+ + + ++ Sbjct: 69 ND-ITLKDIYVAVVAKRNFL--------NVDHNTSETCPVGSVIPRVMEKYY 111 >gi|163731797|ref|ZP_02139244.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161395251|gb|EDQ19573.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 147 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + IA IS +L ++ L +A +V +VRG GG RL R I +++++ A +E+ Sbjct: 18 LGDIATRQAISLAYLEQLFVKLRRADLVTSVRGPGGGYRLKRSPSDIRVVEILSAVDET 76 >gi|254480074|ref|ZP_05093322.1| rrf2 family protein (putative transcriptional regulator) [marine gamma proteobacterium HTCC2148] gi|214039636|gb|EEB80295.1| rrf2 family protein (putative transcriptional regulator) [marine gamma proteobacterium HTCC2148] Length = 144 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H P ++ I+ IS +L ++ L + +V +VRG GG RL R + Sbjct: 1 MLDLALHGSSGPVSLADISGRQDISLSYLEQLFAKLRRNDLVTSVRGPGGGYRLSRHTGE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + +V A E+ C + DC C + + L+Q S+ LV Sbjct: 61 IFVAQIVDAVNEAVDATGCGGTS--DCQQGEVCLTHHLWCDLSDQIHGFLSQISLANLVE 118 Query: 133 NRSSIKKI 140 R +K I Sbjct: 119 -RKEVKHI 125 >gi|169350557|ref|ZP_02867495.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552] gi|169292877|gb|EDS75010.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552] Length = 146 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +DY +A + ++ + + KIL L AG+VE RG GG + + +QI D+ Sbjct: 22 DDYKITSDFLAASVNVNPVIIRKILSQLKNAGLVEVKRG-SGGATIAKELEQINFYDIYS 80 Query: 81 ATE 83 A E Sbjct: 81 AVE 83 >gi|325289388|ref|YP_004265569.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] gi|324964789|gb|ADY55568.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] Length = 155 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R + +LM A D Y S ++++ ++ + + I L KA I++ G Sbjct: 1 MRASTRFAIAVHILMLTAAFQDKYKITSSMLSDSTGVNAVIIRNIFSKLKKAKIIQVSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G++L + +QI++ D+ EE V + DCP+ +T +L K Sbjct: 61 T-SGIKLIKKPEQISLFDIYATVEIEEPINVLSIHQNIPCDCPI--GISVTDILMK 113 >gi|148379309|ref|YP_001253850.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|153932711|ref|YP_001383685.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 19397] gi|153936293|ref|YP_001387233.1| putative transcriptional regulator [Clostridium botulinum A str. Hall] gi|153940905|ref|YP_001390690.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|168179993|ref|ZP_02614657.1| putative transcriptional regulator [Clostridium botulinum NCTC 2916] gi|148288793|emb|CAL82877.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928755|gb|ABS34255.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 19397] gi|152932207|gb|ABS37706.1| putative transcriptional regulator [Clostridium botulinum A str. Hall] gi|152936801|gb|ABS42299.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|182669084|gb|EDT81060.1| putative transcriptional regulator [Clostridium botulinum NCTC 2916] gi|295318764|gb|ADF99141.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] gi|322805649|emb|CBZ03214.1| rrf2 family transcriptional regulator [Clostridium botulinum H04402 065] Length = 137 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ DY +RV+++ + Y R+ I+E + FL K+L+ L K+GIV + R Sbjct: 1 MKITQEADYALRVILHLSKLG-YGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 G +GG L + I + DV++A + + C Sbjct: 60 GVKGGYALNKQPKDINLKDVIEAIDGPICINRCI 93 >gi|241889351|ref|ZP_04776652.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans ATCC 10379] gi|241863894|gb|EER68275.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans ATCC 10379] Length = 167 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 1 MHLTKRTDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MHLTK T+ I V++Y + + N +I++ IS +L KI++ LV +V+ Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHVFLNS-KEISQRLNISPTYLKKIMRKLVVNDLVKANT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 G GG + + ++T+ DV A + E FA Sbjct: 60 GIGGGYK-YKSNKKVTLYDVYVALNDE---VEIFA 90 >gi|237794684|ref|YP_002862236.1| putative transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|229261414|gb|ACQ52447.1| putative transcriptional regulator [Clostridium botulinum Ba4 str. 657] Length = 137 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ DY +RV+++ + Y R+ I+E + FL K+L+ L K+GIV + R Sbjct: 1 MKITQEADYALRVILHLS-KLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 G +GG L + I + DV++A + + C Sbjct: 60 GVKGGYALNKQPKDINLRDVIEAIDGPICINRCI 93 >gi|325125820|gb|ADY85150.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 149 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + K + I VL+ A+ D P + ++ +S+ +L KIL L K G++ Sbjct: 1 MKINKSVEQAIYVLLILALQKDGEPLKSRVLSTHLKVSDSYLKKILMKLKKGGLIAASAS 60 Query: 60 RRGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 + GG +L P I+I DV A T++ ++ D V ++ +A Sbjct: 61 KNGGYQLAWPIGAISIKDVFTALQLTDDQLELSHLAQYIFPDPNHVAQSEQEISQAFHQA 120 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 AF+D L Q+ ++ L+++ + Sbjct: 121 FAAFYDQLGQFKLDRLLKDDA 141 >gi|116747793|ref|YP_844480.1| hypothetical protein Sfum_0345 [Syntrophobacter fumaroxidans MPOB] gi|116696857|gb|ABK16045.1| protein of unknown function DUF402 [Syntrophobacter fumaroxidans MPOB] Length = 319 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%) Query: 38 ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--- 94 +LFL IL PL KAG+V R G + RP + + +V AT ES F+ Sbjct: 156 DLFLQAILAPLEKAGVVRVEHVRPSG-KSMRPREGV----LVNATPESILFRRSFSKGGT 210 Query: 95 -HKIDCPL-VGSCGLTSV 110 +D P+ G GLT++ Sbjct: 211 YDGLDVPIQAGDYGLTTI 228 >gi|168184147|ref|ZP_02618811.1| putative transcriptional regulator [Clostridium botulinum Bf] gi|182672686|gb|EDT84647.1| putative transcriptional regulator [Clostridium botulinum Bf] Length = 137 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ DY +RV+++ + Y R+ I+E + FL K+L+ L K+GIV + R Sbjct: 1 MKITQEADYALRVILHLSKLG-YGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 G +GG L + I + DV++A + + C Sbjct: 60 GVKGGYALNKQPKDINLRDVIEAIDGPICINRCI 93 >gi|319938822|ref|ZP_08013186.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV] gi|319811872|gb|EFW08138.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV] Length = 145 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +A++ ++ + + KIL L A ++ RG RGG + + IT+LDV +A E Sbjct: 31 LADSVGVNPVIIRKILSQLKSADLISVARG-RGGAIIRKDLKDITLLDVYQAVESLGKSG 89 Query: 90 ECFASHKIDCP 100 + F+ H+ P Sbjct: 90 QLFSFHEHPNP 100 >gi|170760233|ref|YP_001786721.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407222|gb|ACA55633.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 137 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58 M +T+ DY +RV+++ + Y R+ I+E + FL K+L+ L K+GIV + R Sbjct: 1 MKITQEADYALRVILHLSKLG-YGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 G +GG L + I + DV++A + + C Sbjct: 60 GVKGGYALNKQPKDINLRDVIEAIDGPICINRC 92 >gi|324991473|gb|EGC23406.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK353] Length = 164 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 15 MQISSRFTIATHMLIVLALEGKKQKLTSDILASSVGVNPVIIRKTLSQLKNAGMITVARG 74 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 75 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 118 >gi|148244681|ref|YP_001219375.1| Fe-S cluster-containing transcription factor [Candidatus Vesicomyosocius okutanii HA] gi|146326508|dbj|BAF61651.1| Fe-S cluster-containing transcription factor [Candidatus Vesicomyosocius okutanii HA] Length = 139 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A ++ P + I++ IS +L ++ L +A +V++VRG Sbjct: 1 MQLTTKGRYAVTAILDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L A I + +++A +E+ + C Sbjct: 61 PGGGYLLDAKACDINLTQIIEAVDENIDLRRC 92 >gi|116328585|ref|YP_798305.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331314|ref|YP_801032.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121329|gb|ABJ79372.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125003|gb|ABJ76274.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 139 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 13/137 (9%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T R I +L ++ ++AE+ + + + KIL L GIV G G Sbjct: 1 MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNRGIVRNQMGPNG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPLVGSCGLTSVLRKAL 115 G L + I + ++ A +E F +C H I P+ L+ V KA Sbjct: 61 GYVLAKTPSAINLKEIYVAIDEKIFQMHSKSPNKKCICGHAIQ-PI-----LSKVYEKAQ 114 Query: 116 NAFFDVLTQYSIECLVR 132 D L +++ + R Sbjct: 115 KVLEDELGSTNLDLIAR 131 >gi|190576325|ref|YP_001974170.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190014247|emb|CAQ47891.1| putative transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 138 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 33/78 (42%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P Q+A + + ++L L KAG+V + RG GG L R A IT+ D+ A Sbjct: 10 PRTSEQLASCLPTHPVVIRRLLAQLHKAGLVRSTRGHGGGSLLARDAAAITLHDIYLAVG 69 Query: 84 ESFFVAECFASHKIDCPL 101 V CP+ Sbjct: 70 APPLVQVGARDSGGGCPI 87 >gi|331082894|ref|ZP_08332015.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400035|gb|EGG79688.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium 6_1_63FAA] Length = 311 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102 +I+ L K VE V+G+ GG RL + I D+++ TE C + C Sbjct: 213 RIMPVLSKNHYVEGVQGKGGGYRLTKEPKDYRIGDILRLTEGQLVPVACLECNAETCKRA 272 Query: 103 GSCGLTSVLRK---ALNAFFDVLT 123 C + ++ +N +FD +T Sbjct: 273 NICKTLPMWKEFHHMVNNYFDNIT 296 >gi|324327310|gb|ADY22570.1| rrf2 family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 137 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++ + + + T E +C S+ C + S +RK L F Sbjct: 69 SEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110 >gi|167621798|ref|YP_001676583.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167351539|gb|ABZ74269.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 142 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57 M ++R + L+Y A P++ + E C S + + ++ LVKAG++ + Sbjct: 1 MSESQRFPTAVHALVYLAHSKATPHQPVRSVELACSVNASHVGVRRVTARLVKAGLIGSQ 60 Query: 58 RGRRGGVRLCRPADQITILDVVKA 81 GR+GG L ++IT+ V++A Sbjct: 61 DGRKGGAWLRADPERITLDQVLEA 84 >gi|288956989|ref|YP_003447330.1| transcriptional regulator [Azospirillum sp. B510] gi|288909297|dbj|BAI70786.1| transcriptional regulator [Azospirillum sp. B510] Length = 312 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%) Query: 6 RTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R DYG R V+ Y A H D P + ++AE C S ++ + + ET+R Sbjct: 30 RLDYGDRTERVVAYIADHLDDPLDLERLAEVACFSPYHFHRVYRAITGETAAETLR---- 85 Query: 63 GVRLCRPA-----DQITILDVVK 80 +RL R A D I I D+ + Sbjct: 86 RLRLHRAAGDLVRDSIAIPDIAR 108 >gi|196042814|ref|ZP_03110053.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225865368|ref|YP_002750746.1| rrf2 family protein [Bacillus cereus 03BB102] gi|196026298|gb|EDX64966.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225790074|gb|ACO30291.1| rrf2 family protein [Bacillus cereus 03BB102] Length = 137 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++ + + + T E +C S+ C + S +RK L F Sbjct: 69 SEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110 >gi|292654129|ref|YP_003534027.1| Uncharacterized protein family UPF0074 superfamily [Haloferax volcanii DS2] gi|291369713|gb|ADE01941.1| Uncharacterized protein family UPF0074 superfamily [Haloferax volcanii DS2] Length = 147 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 10/124 (8%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 VL A+ +D ++A + + + + ++L L +A +V++ RG GG L Sbjct: 10 ATHVLTNLAVRSDERLSSDRLAWSVNTNPVVIRQLLCSLREADLVDSKRGPTGGFTLAHE 69 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------LTSVLRKALNAFFDVLT 123 D IT+ D+ +A E+ AE F H + + G L +L A+ A D L Sbjct: 70 PDAITLRDIYEAVED----AEPFCFHTNEPNDECTVGEHIQPVLGELLEPAIQAMLDELD 125 Query: 124 QYSI 127 ++ Sbjct: 126 SVTV 129 >gi|224370917|ref|YP_002605081.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum HRM2] gi|223693634|gb|ACN16917.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum HRM2] Length = 143 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 41/84 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + ++ L + A H+ P + I+ I+ L + L L KAGI+ T++G Sbjct: 1 MSASSKLSNSVKALCFLAKHHPVPQNSACISMDTGINASKLRRHLSALAKAGILRTIQGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEE 84 GG L + + I + ++ A E+ Sbjct: 61 AGGFVLKKAPEDIHLQEIYCALED 84 >gi|268610344|ref|ZP_06144071.1| hypothetical protein RflaF_12696 [Ruminococcus flavefaciens FD-1] Length = 145 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT----EES 85 ++ + ++ + + +L L GIVET +G GG L + D+IT+ D+ KA +E Sbjct: 31 LSGSTGVNAVIVRNVLGQLRNTGIVETRQGS-GGAHLAKALDEITLYDIYKAVDCVDDEG 89 Query: 86 FFVAECFASHKIDCPL 101 F + DCP+ Sbjct: 90 LF--HFHENPNADCPV 103 >gi|318041251|ref|ZP_07973207.1| transcriptional regulator, BadM/Rrf2 family protein [Synechococcus sp. CB0101] Length = 148 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 1 MHLTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +R+ ++ L+ A ++ IA A + L ++L L +AG+VE RG Sbjct: 1 MSLLRRSGQQALQALLELAEAPQQWRSVNDIAAAQALPAPMLEQLLLQLRRAGLVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL R I + +V+ A + E A D L S+ R+ A Sbjct: 61 RLGGYRLQRQPAAIPVAEVLAAVGADIQLVEPDAP---DSNQAEEQVLRSMARRLQRAME 117 Query: 120 DVLTQYSIECLV 131 L Q+++E L+ Sbjct: 118 RELMQFNLEELL 129 >gi|224008993|ref|XP_002293455.1| vacuolar proton pump alpha subunit [Thalassiosira pseudonana CCMP1335] gi|220970855|gb|EED89191.1| vacuolar proton pump alpha subunit [Thalassiosira pseudonana CCMP1335] Length = 621 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 DQ +++V K E F F H CPL + G+ SV+ Sbjct: 508 DQKVVMEVAKLIREDFLAQNAFTEHDFTCPLPKTVGMLSVI 548 >gi|90420066|ref|ZP_01227974.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335400|gb|EAS49150.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 155 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D P Q+A+A + + + +I+ L G+V + +G GG + + Sbjct: 11 LHVLLHMA-ETDGPVTSEQLAKAMQTNPVVIRRIMAGLRNQGLVRSTKGHGGGWTIAKEL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +T+ D+ +A F A ++ + P C ++ +A+NA D Sbjct: 70 STVTLRDIYEALGSPEFFA---MGNRTEAP---GC----LVEEAVNAAMD 109 >gi|257065288|ref|YP_003144960.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] gi|256792941|gb|ACV23611.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] Length = 146 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ +++ + +A + ++ + + +L L AGIV TV Sbjct: 1 MRFSSRLPVATHILLCIALLGHEHKTTSTFLAGSVGVNPVIVRNVLGQLKAAGIV-TVEP 59 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 GG L R ++IT+ DV++A E+ V +CP+ Sbjct: 60 GVGGASLARAPEEITLRDVLEAVEDDAGVFRMHEHPSPECPV 101 >gi|325687289|gb|EGD29311.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK72] Length = 160 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 71 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 114 >gi|118602585|ref|YP_903800.1| BadM/Rrf2 family transcriptional regulator [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567524|gb|ABL02329.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 139 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT + Y + ++ A ND P + I++ IS +L ++ L +A +V++VR Sbjct: 1 MQLTTKGRYAVIAMLDLA-SNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91 G GG L I + +++A +E+ + C Sbjct: 60 GPGGGYLLDAKVSDINLTQIIEAVDENIDLRRC 92 >gi|296535176|ref|ZP_06897398.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas cervicalis ATCC 49957] gi|296264504|gb|EFH10907.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas cervicalis ATCC 49957] Length = 154 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 +LQ L +AGI+ + RG +GG RL R A IT+ ++ A Sbjct: 47 VLQALSRAGILGSTRGPKGGYRLGRAARDITLAELAAA 84 >gi|304407788|ref|ZP_07389439.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304343271|gb|EFM09114.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 142 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPL 101 K++ L K+G V T G GG RL +++++ D+ + + S + C ++DC + Sbjct: 41 KVMSVLRKSGYVATREGAGGGYRLTAEPNEVSLGDIYRVMAQGSLMPSWCSGDPEMDC-V 99 Query: 102 VGSC------GLTSVLRKALNAFFDVLT 123 VGS G+ K L F+ +T Sbjct: 100 VGSNMKQVMFGIFCTAEKRLETHFNAIT 127 >gi|325696155|gb|EGD38046.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK160] Length = 149 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 61 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104 >gi|24215428|ref|NP_712909.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657165|ref|YP_001251.1| hypothetical protein LIC11283 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196551|gb|AAN49927.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600403|gb|AAS69888.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 139 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 21/135 (15%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T R I +L ++ ++AE+ + + + KIL L GIV G G Sbjct: 1 MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNQGIVRNQMGPNG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPL-------------- 101 G L + I + ++ +A +E F +C H I L Sbjct: 61 GYVLAKTPASINLKEIYEAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEEE 120 Query: 102 VGSCGLTSVLRKALN 116 +GS L S+ ++ LN Sbjct: 121 LGSTDLDSITKEILN 135 >gi|332367121|gb|EGJ44857.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 170 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 81 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124 >gi|325690774|gb|EGD32775.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK115] gi|332358975|gb|EGJ36796.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK49] Length = 169 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 81 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124 >gi|332358706|gb|EGJ36529.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK355] Length = 150 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 61 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104 >gi|282925438|ref|ZP_06333093.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus aureus A9765] gi|282592532|gb|EFB97543.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus aureus A9765] Length = 116 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61 >gi|313905671|ref|ZP_07839032.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469495|gb|EFR64836.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 146 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 +A + + + + KIL L AG++ +RG GG+ L R IT DV +A E Sbjct: 31 LAASINTNPVIIRKILTQLKNAGLINVIRG-TGGIELTRDLKDITFYDVYQAIE 83 >gi|322385029|ref|ZP_08058679.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270939|gb|EFX53849.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 149 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 61 T-GGAEITKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104 >gi|327460982|gb|EGF07315.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 170 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 81 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124 >gi|228922119|ref|ZP_04085429.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940467|ref|ZP_04103036.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953676|ref|ZP_04115716.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959598|ref|ZP_04121279.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228979946|ref|ZP_04140265.1| Rrf2 [Bacillus thuringiensis Bt407] gi|229047069|ref|ZP_04192691.1| Rrf2 [Bacillus cereus AH676] gi|229070848|ref|ZP_04204076.1| Rrf2 [Bacillus cereus F65185] gi|229080611|ref|ZP_04213131.1| Rrf2 [Bacillus cereus Rock4-2] gi|229110826|ref|ZP_04240389.1| Rrf2 [Bacillus cereus Rock1-15] gi|229128677|ref|ZP_04257655.1| Rrf2 [Bacillus cereus BDRD-Cer4] gi|229145982|ref|ZP_04274361.1| Rrf2 [Bacillus cereus BDRD-ST24] gi|229151583|ref|ZP_04279785.1| Rrf2 [Bacillus cereus m1550] gi|229179684|ref|ZP_04307034.1| Rrf2 [Bacillus cereus 172560W] gi|229191500|ref|ZP_04318483.1| Rrf2 [Bacillus cereus ATCC 10876] gi|228591980|gb|EEK49816.1| Rrf2 [Bacillus cereus ATCC 10876] gi|228603790|gb|EEK61261.1| Rrf2 [Bacillus cereus 172560W] gi|228631827|gb|EEK88454.1| Rrf2 [Bacillus cereus m1550] gi|228637590|gb|EEK94041.1| Rrf2 [Bacillus cereus BDRD-ST24] gi|228654870|gb|EEL10730.1| Rrf2 [Bacillus cereus BDRD-Cer4] gi|228672705|gb|EEL27986.1| Rrf2 [Bacillus cereus Rock1-15] gi|228702712|gb|EEL55178.1| Rrf2 [Bacillus cereus Rock4-2] gi|228712238|gb|EEL64185.1| Rrf2 [Bacillus cereus F65185] gi|228724258|gb|EEL75593.1| Rrf2 [Bacillus cereus AH676] gi|228779785|gb|EEM28033.1| Rrf2 [Bacillus thuringiensis Bt407] gi|228800090|gb|EEM47026.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805910|gb|EEM52489.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228819232|gb|EEM65288.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837535|gb|EEM82866.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 116 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 I+E+ + + + K+L L K +++ G GG R D+I + + + T E Sbjct: 7 ISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITSEGALQP 66 Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +C S+ C + S +RK L A F Sbjct: 67 KCPESNN-------QCVVGSNMRKVLFAIF 89 >gi|323525697|ref|YP_004227850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382699|gb|ADX54790.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1001] Length = 151 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSDMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L R +QI++LDV +A ++ A+ FA H+ Sbjct: 61 GGGALLARAPEQISLLDVYRAVDD----AQLFALHR 92 >gi|170696438|ref|ZP_02887565.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] gi|170138643|gb|EDT06844.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] Length = 151 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L R +QI++LDV +A ++ A+ FA H+ Sbjct: 61 GGGALLARAPEQISLLDVYRAVDD----AQLFALHR 92 >gi|88801410|ref|ZP_01116938.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter irgensii 23-P] gi|88782068|gb|EAR13245.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter irgensii 23-P] Length = 137 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L + N P I+ I+++ IS FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALTFLGKQENRLPVSIATISKSENISLKFLESILLTLRKNGILGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGL 107 GG L + +I + +++ E + C F DCP +C + Sbjct: 62 GGYYLLKEPSEIPMASIMRILEGPISMVPCVSLNFYEKCDDCPDENACSV 111 >gi|172057569|ref|YP_001814029.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990090|gb|ACB61012.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 138 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R + +L A H D IA + + + + +++ L +AG++ TV G+ G Sbjct: 2 INSRLAVSVHILALIATHPDQALSSDYIAGSVNTNPVVIRRLIGSLRQAGLLSTVAGKSG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 P D IT+L + +A E F+ H+ P +C + ++ LN F Sbjct: 62 ATLTKDPQD-ITLLMIYRAVEPK---ETLFSMHEQPNP---ACPVGRDIQSTLNQSF 111 >gi|258422782|ref|ZP_05685685.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257847013|gb|EEV71024.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|283469886|emb|CAQ49097.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ST398] Length = 146 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61 >gi|327470615|gb|EGF16071.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK330] Length = 149 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 61 T-GGAEIVKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104 >gi|324993824|gb|EGC25743.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994855|gb|EGC26768.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK678] gi|327474699|gb|EGF20104.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK408] gi|328946722|gb|EGG40860.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 159 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 71 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 114 >gi|323351192|ref|ZP_08086848.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322122416|gb|EFX94127.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 169 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 81 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124 >gi|302332307|gb|ADL22500.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus JKD6159] Length = 146 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61 >gi|15923585|ref|NP_371119.1| hypothetical protein SAV0595 [Staphylococcus aureus subsp. aureus Mu50] gi|15926273|ref|NP_373806.1| hypothetical protein SA0552 [Staphylococcus aureus subsp. aureus N315] gi|148267055|ref|YP_001245998.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393103|ref|YP_001315778.1| hypothetical protein SaurJH1_0633 [Staphylococcus aureus subsp. aureus JH1] gi|156978924|ref|YP_001441183.1| hypothetical protein SAHV_0593 [Staphylococcus aureus subsp. aureus Mu3] gi|253316612|ref|ZP_04839825.1| hypothetical protein SauraC_10785 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731206|ref|ZP_04865371.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005388|ref|ZP_05143989.2| hypothetical protein SauraM_02935 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258420350|ref|ZP_05683295.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258436521|ref|ZP_05689179.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258442345|ref|ZP_05691108.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446283|ref|ZP_05694441.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258450058|ref|ZP_05698155.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455097|ref|ZP_05703059.1| transcriptional regulator [Staphylococcus aureus A5937] gi|269202216|ref|YP_003281485.1| hypothetical protein SAAV_0558 [Staphylococcus aureus subsp. aureus ED98] gi|282895034|ref|ZP_06303256.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117] gi|295406974|ref|ZP_06816777.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819] gi|297246135|ref|ZP_06929990.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796] gi|13700487|dbj|BAB41784.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246363|dbj|BAB56757.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740124|gb|ABQ48422.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus JH9] gi|149945555|gb|ABR51491.1| protein of unknown function UPF0074 [Staphylococcus aureus subsp. aureus JH1] gi|156721059|dbj|BAF77476.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724947|gb|EES93676.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257843664|gb|EEV68068.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257848792|gb|EEV72778.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257852074|gb|EEV76006.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854877|gb|EEV77822.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257856677|gb|EEV79581.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257862737|gb|EEV85503.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262074506|gb|ACY10479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED98] gi|282762617|gb|EFC02755.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117] gi|285816296|gb|ADC36783.1| hypothetical protein SA2981_0572 [Staphylococcus aureus 04-02981] gi|294968205|gb|EFG44231.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819] gi|297176981|gb|EFH36237.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796] gi|312829090|emb|CBX33932.1| transcriptional regulator family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128897|gb|EFT84895.1| hypothetical protein CGSSa03_00785 [Staphylococcus aureus subsp. aureus CGS03] gi|329724366|gb|EGG60877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 21172] Length = 146 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61 >gi|325694827|gb|EGD36732.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK150] Length = 160 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 71 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 114 >gi|327490256|gb|EGF22044.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 149 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 61 T-GGAEIAKDLKGISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104 >gi|57650052|ref|YP_185526.1| hypothetical protein SACOL0641 [Staphylococcus aureus subsp. aureus COL] gi|151220770|ref|YP_001331592.1| hypothetical protein NWMN_0558 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508834|ref|YP_001574493.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141885|ref|ZP_03566378.1| hypothetical protein SauraJ_09680 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732966|ref|ZP_04867131.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|258450951|ref|ZP_05699003.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|284023610|ref|ZP_06378008.1| hypothetical protein Saura13_03432 [Staphylococcus aureus subsp. aureus 132] gi|304381805|ref|ZP_07364452.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284238|gb|AAW36332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|150373570|dbj|BAF66830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367643|gb|ABX28614.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729146|gb|EES97875.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|257861371|gb|EEV84180.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|269940167|emb|CBI48543.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|302750485|gb|ADL64662.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339591|gb|EFM05538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196522|gb|EFU26871.1| hypothetical protein CGSSa01_02231 [Staphylococcus aureus subsp. aureus CGS01] gi|320139838|gb|EFW31700.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MRSA131] gi|329313316|gb|AEB87729.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus T0131] gi|329729739|gb|EGG66140.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 21193] gi|329729854|gb|EGG66246.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 21189] Length = 146 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61 >gi|329847412|ref|ZP_08262440.1| transcriptional regulator family protein [Asticcacaulis biprosthecum C19] gi|328842475|gb|EGF92044.1| transcriptional regulator family protein [Asticcacaulis biprosthecum C19] Length = 151 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 13/135 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56 M ++R L Y A N Y S +A + + + + ++ L KAG+V T Sbjct: 1 MSDSQRFPVAAHTLAYLAHRNAYSREAAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVAT 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKAL 115 G GG L + + I + +V++A V C +H P+ C ++ + KA+ Sbjct: 61 CSGVAGGAWLLKRPEDIRLDEVLRA------VNGC--AHLGSAPIGAEGCPVSQAIPKAV 112 Query: 116 NAFFDVLTQYSIECL 130 N+ + Q + E L Sbjct: 113 NSAMQLANQAASEAL 127 >gi|294849241|ref|ZP_06789984.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754] gi|294823773|gb|EFG40199.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754] Length = 146 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61 >gi|296275510|ref|ZP_06858017.1| hypothetical protein SauraMR_04160 [Staphylococcus aureus subsp. aureus MR1] Length = 146 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61 >gi|291519431|emb|CBK74652.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio fibrisolvens 16/4] Length = 144 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETV 57 M ++ R + VL+ ND N+I+ +A + ++ + ++LQ L KA IV Sbjct: 1 MQISSRFTIAVHVLIAIETFKND--NKITSEFLASSANVNPTVIRRLLQQLKKAEIVTVK 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATE 83 RG GG + + +IT+LDV A E Sbjct: 59 RGS-GGADIEKSLTEITLLDVYNAVE 83 >gi|255534651|ref|YP_003095022.1| rrf2 family protein (putative transcriptional regulator) [Flavobacteriaceae bacterium 3519-10] gi|255340847|gb|ACU06960.1| rrf2 family protein (putative transcriptional regulator) [Flavobacteriaceae bacterium 3519-10] Length = 144 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +K +YGI+ +Y A + NR + +A + F KILQ L + I+++VRG Sbjct: 2 FSKACEYGIKAAIYIAQQSQL-NRTVNVKDVALSIDAPVAFTAKILQLLCREEILQSVRG 60 Query: 60 RRGGVRLCRPAD-QITILDVVKATEESFFVAEC 91 ++GG Q I D+V + +C Sbjct: 61 KQGGFFFSEEKQRQFRIYDLVTRIDGDGLFTQC 93 >gi|300775786|ref|ZP_07085647.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300505813|gb|EFK36950.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 136 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 35/56 (62%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 +A + ++ + + K + L +AG++ + +G+ GG +L + AD ITI ++ KA + + Sbjct: 29 MAGSINVNPVIVRKEISVLREAGLIISRQGKEGGSQLAKNADMITISEIYKAVKNT 84 >gi|149180394|ref|ZP_01858899.1| possible transcriptional regulator (rrf2 family protein) [Bacillus sp. SG-1] gi|148852586|gb|EDL66731.1| possible transcriptional regulator (rrf2 family protein) [Bacillus sp. SG-1] Length = 141 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++ + L+Y A D+ IA+ + + + KI+ L G V+T G Sbjct: 1 MYVNSEFTIAVHSLVYLAYLPDHMASSQAIAQNVATNPVRVRKIMSCLRDTGFVKTKEGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L IT+ V ++ + + SC +++ +++ +N F Sbjct: 61 GGGYTLTAEPGDITLGQVYRSVSYGAIKPTWCKGEREE-----SCLISTNIQEVVNGIFT 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 QY E L ++++I+ + N Sbjct: 116 EADQYFAEYL--DKTTIESVLN 135 >gi|121606333|ref|YP_983662.1| BadM/Rrf2 family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595302|gb|ABM38741.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas naphthalenivorans CJ2] Length = 179 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ + + ++ A+ N P ++ I IS +L ++ L ++G+VE+ RG Sbjct: 1 MRLSTKSRFAVTAMIDIALQGNAGPISLADIGMRHKISVSYLEQLFSRLRQSGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKAL 115 GG L R ++ I++ D++ A E A K + G G +T L AL Sbjct: 61 PGGGYSLSRSSESISVADIIGAIE-----VHPHAPGKGEKAFPGQAGSGEWMTQELWAAL 115 Query: 116 NA 117 NA Sbjct: 116 NA 117 >gi|42522704|ref|NP_968084.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39573900|emb|CAE79077.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100] Length = 137 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 29/47 (61%) Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +++ LV AG++ + +G+ GGV+L + +I++ DV A + +A Sbjct: 42 RLISKLVDAGLLTSFKGKAGGVKLAKAPKEISLRDVYVAITDKKLIA 88 >gi|125718392|ref|YP_001035525.1| hypothetical protein SSA_1586 [Streptococcus sanguinis SK36] gi|125498309|gb|ABN44975.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 150 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGRKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101 GG + + I++LDV A E + F+ H DCP+ Sbjct: 61 T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104 >gi|118478673|ref|YP_895824.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118417898|gb|ABK86317.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] Length = 137 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 9 IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGGGFIFARDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++ + + + T E +C S+ C + S +RK L F Sbjct: 69 SEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110 >gi|298290312|ref|YP_003692251.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296926823|gb|ADH87632.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 147 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ ++ I ++ A+H P +A + L +LQ LV AG+++ VRG R Sbjct: 4 LSDKSLLAIAAVVDVALHARGMPVAAKALAARHDLPPRHLEPVLQALVHAGVLKGVRGPR 63 Query: 62 GGVRLCRPADQIT 74 GG L R +IT Sbjct: 64 GGYELARERRRIT 76 >gi|268609517|ref|ZP_06143244.1| hypothetical protein RflaF_08475 [Ruminococcus flavefaciens FD-1] Length = 145 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 ++ + ++ + + +L L GIVET +G GG L + D+IT+ D+ KA + Sbjct: 31 LSGSTGVNAVIVRNVLGQLRNTGIVETRQGS-GGAHLAKALDEITLYDIYKAVD 83 >gi|15891278|ref|NP_356950.1| hypothetical protein Atu3666 [Agrobacterium tumefaciens str. C58] gi|15159653|gb|AAK89735.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 152 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/83 (21%), Positives = 46/83 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ ++ I +L + + ++A +++ +++ LV+ G++++ RGR Sbjct: 1 MYLTRESEIAIGILTNFVHEAEEAHTTGKLAHRLGVTKDHAARVVAILVRNGLLQSRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATE 83 GGV L + +++ +++AT+ Sbjct: 61 TGGVVLNVDPESLSVGMILRATQ 83 >gi|194367667|ref|YP_002030277.1| BadM/Rrf2 family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350471|gb|ACF53594.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas maltophilia R551-3] Length = 151 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 P Q+A + + ++L L +AG+V + RG GG L R A IT+ D+ Sbjct: 23 PRTSEQLASCLPTHPVVIRRLLAQLHRAGLVRSTRGHGGGSVLARDAAAITLHDI 77 >gi|330684769|gb|EGG96463.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis VCU121] Length = 142 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L I ++ IA + + + + +I+ L +A +V+ RG Sbjct: 1 MKISSRFTVAVHILSLIQIESNQELSSKYIAGSVNTNPVVIRRIIGYLKRAQLVDMYRGN 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGS---CGLTSVLRKAL 115 GG+ L +P IT+LDV A + E + + ++C +VG+ L +L +A Sbjct: 61 -GGLYLLKPLSDITLLDVYHAVDVVEEGQLFQIHEDTNVNC-VVGANIQGVLEIILMQAQ 118 Query: 116 NAFFDVLTQYSIECLVR 132 +A VL + ++ +V Sbjct: 119 DAMEGVLAKVTMNDIVN 135 >gi|322382580|ref|ZP_08056458.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae B-3650] gi|321153435|gb|EFX45842.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae B-3650] Length = 148 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILDVVKATEE-S 85 +IA C + KI+ L KAG V+T G GG L C P D +T+ D+ + T S Sbjct: 31 GEIAANVCTHAARIRKIMGMLRKAGYVKTKEGFGGGFLLNCDP-DAVTLADIYRVTSAGS 89 Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 C CP ++S ++ +N F Sbjct: 90 LKPYWCTGDKSQSCP------VSSNMQDVMNRLF 117 >gi|307730053|ref|YP_003907277.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584588|gb|ADN57986.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1003] Length = 151 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L R +QI++LDV +A ++ A+ FA H+ Sbjct: 61 GGGALLARAPEQISLLDVYRAVDD----AQLFALHR 92 >gi|309799014|ref|ZP_07693270.1| Rrf2 family protein [Streptococcus infantis SK1302] gi|308117364|gb|EFO54784.1| Rrf2 family protein [Streptococcus infantis SK1302] Length = 145 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S +A + ++ + + K L L KA ++ RG Sbjct: 1 MQISSRFTIATHMLIIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGS---CGLTSVLRKA 114 GG + + + I++LDV +A E + F+ H P VGS L L+K Sbjct: 61 T-GGAEIIKDLEDISLLDVYQAVECLGKTGQLFSFHDNPNPACPVGSNIHGVLDEKLQKI 119 Query: 115 LNAFFDVLTQYSIECLVRNRSS 136 A L+Q S+ +V + S Sbjct: 120 QLAMEQELSQTSLAQVVADAES 141 >gi|253700358|ref|YP_003021547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251775208|gb|ACT17789.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 153 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A + + FL IL L GI+++ +G+ Sbjct: 2 ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117 GG L R +IT V+ E C + +C +CG+ V++ +A Sbjct: 62 GGYYLGRHPSKITFGQAVRVMEGPLAPVPCVSETAYAKCTECENEVTCGIRLVMKDVRDA 121 Query: 118 FFDVL 122 +L Sbjct: 122 MAVIL 126 >gi|260662062|ref|ZP_05862958.1| transcription regulator [Lactobacillus fermentum 28-3-CHN] gi|260553445|gb|EEX26337.1| transcription regulator [Lactobacillus fermentum 28-3-CHN] Length = 149 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L + ++ + ++ + IS + + +++ L +AG+V+T +G Sbjct: 1 MRASTRFSDAIHILCFLQVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEES 85 RL R +IT+ DV A EES Sbjct: 60 TAQPRLARDLQKITLYDVYLAVEES 84 >gi|187923598|ref|YP_001895240.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Burkholderia phytofirmans PsJN] gi|187714792|gb|ACD16016.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phytofirmans PsJN] Length = 151 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGAPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96 GG L R +QIT+L+V +A ++ A+ FA H+ Sbjct: 61 GGGALLARAPEQITLLEVYRAVDD----AQLFALHR 92 >gi|312129124|ref|YP_003996464.1| transcriptional regulator, badm/rrf2 family [Leadbetterella byssophila DSM 17132] gi|311905670|gb|ADQ16111.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella byssophila DSM 17132] Length = 144 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR +Y A + ++S +A+A + KILQ L K I+++ +G Sbjct: 2 FSKACEYGIRAAIYIAQQSLVDRKVSLKDVAKAIESPTAYTSKILQKLSKNSIIKSDKGP 61 Query: 61 RGGVRL 66 GG + Sbjct: 62 TGGFSM 67 Searching..................................................done Results from round 2 >gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040297|gb|ACT57093.1| iron-responsive transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 144 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR Sbjct: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD Sbjct: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VLTQYSIECLVRNRSSIKKIFNAG Sbjct: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 >gi|315121821|ref|YP_004062310.1| iron-responsive transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495223|gb|ADR51822.1| iron-responsive transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 144 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 114/143 (79%), Positives = 128/143 (89%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLTKRTDYGIRVLMYCA++ D PNRI+QIAEACCISE FLFKILQPL KAGI+ETVRGR Sbjct: 1 MHLTKRTDYGIRVLMYCALNQDCPNRIAQIAEACCISEFFLFKILQPLGKAGIIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRLCRPADQIT+LDVVKATEESF++AECF HKI CPLVG+C L+SV +KALNAFFD Sbjct: 61 NGGVRLCRPADQITVLDVVKATEESFYMAECFGKHKISCPLVGNCNLSSVFQKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL +YSIECLV++RS KK+ A Sbjct: 121 VLKRYSIECLVQDRSLYKKLLKA 143 >gi|222084938|ref|YP_002543467.1| rhizobial iron transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722386|gb|ACM25542.1| rhizobial iron transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 162 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 87/142 (61%), Positives = 109/142 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + Y +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGYLSRIPEIAKAYGVSELFLFKILQPLTKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +P I++ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFFD Sbjct: 61 NGGVRLGKPPTDISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VLT+YSI+ LV+ R I + Sbjct: 121 VLTEYSIDDLVKARPQINFLLG 142 >gi|227820925|ref|YP_002824895.1| iron-responsive transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339924|gb|ACP24142.1| putative transcriptional regulator, Rrf2 family [Sinorhizobium fredii NGR234] Length = 154 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 86/142 (60%), Positives = 111/142 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA+A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAKAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA +I++ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFFD Sbjct: 61 NGGVRLPKPASEISLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y+I+ LV+ R I + Sbjct: 121 VLKGYTIDDLVKARPQINFLLG 142 >gi|15887554|ref|NP_353235.1| iron-responsive transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155087|gb|AAK86020.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 156 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 86/142 (60%), Positives = 109/142 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA++I++ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFFD Sbjct: 61 NGGVRLGKPAEKISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI+ LV+ R I + Sbjct: 121 VLAEYSIDDLVKARPQINFLLG 142 >gi|6224919|gb|AAF06014.1|AF193764_1 Aau3 protein [Sinorhizobium meliloti] Length = 154 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 87/142 (61%), Positives = 110/142 (77%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAGAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+ Sbjct: 61 NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y+I+ LV+ R I + Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142 >gi|15964483|ref|NP_384836.1| iron-responsive transcriptional regulator [Sinorhizobium meliloti 1021] gi|307308426|ref|ZP_07588130.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|307318989|ref|ZP_07598420.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|8469098|sp|Q9R9M8|AAU3_RHIME RecName: Full=Protein aau3 gi|15073660|emb|CAC45302.1| Transcriptional regulator of the iron limitation response [Sinorhizobium meliloti 1021] gi|306895403|gb|EFN26158.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306901029|gb|EFN31637.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 154 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 87/142 (61%), Positives = 110/142 (77%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+ Sbjct: 61 NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y+I+ LV+ R I + Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142 >gi|327190570|gb|EGE57662.1| iron-responsive transcriptional regulator [Rhizobium etli CNPAF512] Length = 160 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL RPA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGRPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL++Y+I+ LV+ R I + Sbjct: 121 AVLSEYTIDDLVKARPQINFLLG 143 >gi|325291641|ref|YP_004277505.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3] gi|325059494|gb|ADY63185.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3] Length = 156 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 87/142 (61%), Positives = 109/142 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA++I++ DVVK TE+SF +AECF ++CPLV SCGL S LRKALNAFFD Sbjct: 61 NGGVRLGKPAEKISLFDVVKVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI+ LV+ R I + Sbjct: 121 VLAEYSIDDLVKARPQINFLLG 142 >gi|218663399|ref|ZP_03519329.1| iron-responsive transcriptional regulator [Rhizobium etli IE4771] Length = 160 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 85/143 (59%), Positives = 108/143 (75%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL+ Y+I+ LV+ R I + Sbjct: 121 AVLSDYTIDDLVKARPQINFLLG 143 >gi|86356384|ref|YP_468276.1| iron-responsive transcriptional regulator [Rhizobium etli CFN 42] gi|190890437|ref|YP_001976979.1| rhizobial iron transcriptional regulator protein [Rhizobium etli CIAT 652] gi|86280486|gb|ABC89549.1| rhizobial iron transcriptional regulator protein [Rhizobium etli CFN 42] gi|190695716|gb|ACE89801.1| rhizobial iron transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 160 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 85/143 (59%), Positives = 108/143 (75%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL++Y+I+ LV+ R I + Sbjct: 121 AVLSEYTIDDLVKARPQINFLLG 143 >gi|299065123|emb|CBJ36287.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum CMR15] Length = 192 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 62/144 (43%), Positives = 87/144 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 21 MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 80 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DVV+ATE F + ECF + C + CGL VL AL A+F+ Sbjct: 81 AGGITLGRPAAEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 140 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 141 VLDTYTLQDLIERPAALNRVLAEG 164 >gi|241203174|ref|YP_002974270.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857064|gb|ACS54731.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 86/143 (60%), Positives = 110/143 (76%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA I++ DVV+ TE+SF +AECF ++DCPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVDCPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL++YSI+ LV+ R I + Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143 >gi|150395554|ref|YP_001326021.1| iron-responsive transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027069|gb|ABR59186.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 154 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 87/142 (61%), Positives = 109/142 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL +AG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+ Sbjct: 61 NGGVRLPRPAAEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y+I+ LV+ R I + Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142 >gi|13516334|emb|CAC35510.1| rhizobial iron regulator [Rhizobium leguminosarum bv. viciae] Length = 160 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 85/143 (59%), Positives = 111/143 (77%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA I++ DVV+ TE+SF +AECF +++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL++YSI+ LV+ R I + Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143 >gi|300689754|ref|YP_003750749.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum PSI07] gi|299076814|emb|CBJ49424.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum PSI07] Length = 172 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 62/144 (43%), Positives = 86/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQQLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGIALGRPAAEINIGDVVRATEPDFSLVECFHGDDNHCVITRVCGLRGVLTAALRAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDAYTLQDLIDRPAALNRVLAEG 144 >gi|209547997|ref|YP_002279914.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533753|gb|ACI53688.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 86/143 (60%), Positives = 109/143 (76%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL++YSI+ LV+ R I + Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143 >gi|83590489|ref|YP_430498.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573403|gb|ABC19955.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica ATCC 39073] Length = 150 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R +YG+R + A H + P I +AE ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTRGEYGLRAMFDLAQHYGEGPIPIKSVAERQDISEHYLEQLIAVLRKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L R ++IT+ D+++ E EC + C +C + K ++ Sbjct: 61 AQGGYVLSREPEEITVGDIIRVLEGPIAPVECLNTAEGESCERAETCVTRGIWEKVRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 DVL +++ +V + +++ Sbjct: 121 SDVLDSFTLADMVAKANQMRQ 141 >gi|239833919|ref|ZP_04682247.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] gi|239821982|gb|EEQ93551.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] Length = 211 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 106/142 (74%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 59 MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 118 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I++ DVV+ TEE+F +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 119 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 178 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 179 VLMKYSIADLVKARPNVRHLLG 200 >gi|116250549|ref|YP_766387.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255197|emb|CAK06271.1| Rhizobium iron regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 160 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 85/143 (59%), Positives = 110/143 (76%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL +PA I++ DVV+ TE+SF +AECF +++CPLV SCGL S LRKALNAFF Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL++YSI+ LV+ R I + Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143 >gi|300702436|ref|YP_003744036.1| hth-type transcriptional regulator nsrr [Ralstonia solanacearum CFBP2957] gi|299070097|emb|CBJ41384.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum CFBP2957] Length = 170 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/144 (43%), Positives = 85/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA I I DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAADINIGDVVRATEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144 >gi|17548114|ref|NP_521516.1| hypothetical protein RSc3397 [Ralstonia solanacearum GMI1000] gi|17430421|emb|CAD16894.1| putative of unknown function upf0074; transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 172 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/144 (43%), Positives = 87/144 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQNGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DVV+ATE F + ECF + C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAVEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDTYTLQDLIERPAALNRVLAEG 144 >gi|89096423|ref|ZP_01169316.1| YhdE [Bacillus sp. NRRL B-14911] gi|89089277|gb|EAR68385.1| YhdE [Bacillus sp. NRRL B-14911] Length = 158 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +DY IRVL+Y A H ND I +IAEA IS+ L KI+ L K G + TVRG Sbjct: 1 MRLTTYSDYSIRVLIYLASHQNDKLVNIKEIAEAYDISKNHLMKIIYNLGKMGYIRTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG +L + +I I ++V+ TEE F++ ECF HK C + C L +L AL +F Sbjct: 61 RNGGFKLAKLPAEINIGEIVRKTEEDFYLVECF-DHKNKCVITPVCSLKHILNHALESFL 119 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY++E +V N++ +K+ F Sbjct: 120 KVLDQYTLEDIVENKAMLKEYF 141 >gi|222147641|ref|YP_002548598.1| iron-responsive transcriptional regulator [Agrobacterium vitis S4] gi|221734629|gb|ACM35592.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 156 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 86/143 (60%), Positives = 110/143 (76%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + D+ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRILMYCAANKDHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL R ++I++ DVVK TE+SF +AECF ++DCPL+ SCGL S LRKALNAFF Sbjct: 61 NGGVRLGRAPEKISLFDVVKVTEDSFAMAECFEDDGEVDCPLIDSCGLNSALRKALNAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL +YSI+ LV+ R I + Sbjct: 121 AVLAEYSIDDLVKARPQINFLLG 143 >gi|241664864|ref|YP_002983224.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12D] gi|309780331|ref|ZP_07675082.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA] gi|240866891|gb|ACS64552.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12D] gi|308921034|gb|EFP66680.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA] Length = 159 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 60/143 (41%), Positives = 84/143 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I +IA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I + DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL Y+++ LV +++ + Sbjct: 121 VLDGYTLQDLVDKPNAVSRALGE 143 >gi|207722055|ref|YP_002252493.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] gi|207741831|ref|YP_002258223.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] gi|206587229|emb|CAQ17813.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] gi|206593215|emb|CAQ60142.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] Length = 172 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/144 (42%), Positives = 85/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA I I DVV++TE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144 >gi|52079417|ref|YP_078208.1| hypothetical protein BL02858 [Bacillus licheniformis ATCC 14580] gi|52784777|ref|YP_090606.1| YhdE [Bacillus licheniformis ATCC 14580] gi|319646802|ref|ZP_08001031.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2] gi|81386129|sp|Q65M01|NSRR_BACLD RecName: Full=HTH-type transcriptional regulator nsrR gi|52002628|gb|AAU22570.1| conserved hypothetical protein YhdE [Bacillus licheniformis ATCC 14580] gi|52347279|gb|AAU39913.1| YhdE [Bacillus licheniformis ATCC 14580] gi|317391390|gb|EFV72188.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2] Length = 143 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 59/143 (41%), Positives = 90/143 (62%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A +++ I IA++ IS+ L K++ L K G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + + I I +V++ TE+ F + ECF K C L CGL VL KAL+A+ Sbjct: 61 RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 DVL QY+++ ++ N+ I+K+ + Sbjct: 121 DVLDQYTLQDIIMNQDHIRKLLS 143 >gi|83746141|ref|ZP_00943195.1| AAU3 protein precursor [Ralstonia solanacearum UW551] gi|83727107|gb|EAP74231.1| AAU3 protein precursor [Ralstonia solanacearum UW551] Length = 189 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 61/144 (42%), Positives = 85/144 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR Sbjct: 18 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 77 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA I I DVV++TE F + ECF C + CGL VL AL A+F+ Sbjct: 78 AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 137 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 VL Y+++ L+ +++ ++ G Sbjct: 138 VLDTYTLQDLIDKPAALNRVLAEG 161 >gi|295702551|ref|YP_003595626.1| nitric oxide sensitive transcriptional regulator [Bacillus megaterium DSM 319] gi|294800210|gb|ADF37276.1| transcriptional regulator, nitric oxide sensitive [Bacillus megaterium DSM 319] Length = 149 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +RVL+Y + ++ I +IAEA IS+ L KI+ L K G++ET+RG Sbjct: 1 MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I VV+ TEE F + ECF C + C L +VL +A+ AF Sbjct: 61 RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDREGNFCVISPVCKLKNVLHEAMQAFI 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY++E L++N+ + + Sbjct: 121 KVLDQYTLEDLIQNKDELNLLL 142 >gi|92118952|ref|YP_578681.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801846|gb|ABE64221.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter hamburgensis X14] Length = 150 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 82/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A+ +D + I++IA + ISE L K++ L AG +ETVRGR Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDISEAHLMKVVHQLGVAGYIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P + I++ +V++ TE + CF C + SC L L +A AF + Sbjct: 61 GGGLRLAKPVEAISLAEVIRTTEPDMAIVTCFKPVNAPCMINPSCVLKRALERAREAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ LV R+ + + Sbjct: 121 VLEGYTLADLVAPRARLASLLG 142 >gi|187930672|ref|YP_001901159.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12J] gi|187727562|gb|ACD28727.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12J] Length = 159 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 59/143 (41%), Positives = 83/143 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H D I +IA+A I + L KI+Q L + G + TVRGR Sbjct: 1 MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I + DVV+ATE F + ECF C + CGL VL AL A+F+ Sbjct: 61 AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL Y+++ L +++ + Sbjct: 121 VLDGYTLQDLADKPNAVSRALGE 143 >gi|294497180|ref|YP_003560880.1| nitric oxide sensitive transcriptional regulator [Bacillus megaterium QM B1551] gi|294347117|gb|ADE67446.1| transcriptional regulator, nitric oxide sensitive [Bacillus megaterium QM B1551] Length = 149 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +RVL+Y + ++ I +IAEA IS+ L KI+ L K G++ET+RG Sbjct: 1 MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I VV+ TEE F + ECF C + C L SVL +A+ AF Sbjct: 61 RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDCEGNFCIISPVCKLKSVLHEAMQAFI 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY++E L++N+ + + Sbjct: 121 KVLDQYTLEDLIQNKDELNLLL 142 >gi|153010938|ref|YP_001372152.1| iron-responsive transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562826|gb|ABS16323.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi ATCC 49188] Length = 153 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 106/142 (74%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I++ DVV+ TEE+F +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRHLLG 142 >gi|110633798|ref|YP_674006.1| iron-responsive transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284782|gb|ABG62841.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp. BNC1] Length = 153 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 78/142 (54%), Positives = 105/142 (73%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA + +RI IA+A +S+LFLFKILQPLV+AG V+TVRGR Sbjct: 1 MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA+ IT+ DV++ TEESF +AECF + +CPLV CGL LRKAL AFF+ Sbjct: 61 NGGVKLGKPAEDITLFDVIRVTEESFAMAECFEND-TECPLVDGCGLNEALRKALGAFFE 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y+I+ LV R +++ + Sbjct: 120 VLASYTIQDLVDARPNMRDVLG 141 >gi|225629057|ref|ZP_03787090.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] gi|225615553|gb|EEH12602.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] Length = 180 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 28 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 88 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 148 VLMKYSIADLVKARPNVRLLLG 169 >gi|237817129|ref|ZP_04596121.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] gi|237787942|gb|EEP62158.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] Length = 180 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 28 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 88 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 148 VLMKYSIADLVKARPNVRLLLG 169 >gi|260459730|ref|ZP_05807984.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259034532|gb|EEW35789.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 153 Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 81/142 (57%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA +ND +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAMRILMYCAANNDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y+I +V R +++ + Sbjct: 121 VLERYTIADMVAARPNVRSLLG 142 >gi|295401854|ref|ZP_06811818.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312111004|ref|YP_003989320.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294976108|gb|EFG51722.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311216105|gb|ADP74709.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 156 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ A+ I +I++ ISE L KI+ L K G +ET+RG Sbjct: 1 MQLTNYTEYALRVLLFLGALEPGEKTNIKEISQTFSISENHLSKIVYELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I I VV+ TEE+ + ECFASH C L C L SVL +AL AF Sbjct: 61 RNGGIRLAKQPEEINIGAVVRKTEENLSLVECFASHGNHCVLTPVCQLKSVLHEALEAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L+ N+ S++ IF+ Sbjct: 121 RVLDAYALSDLLANKQSLQAIFS 143 >gi|300115490|ref|YP_003762065.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299541427|gb|ADJ29744.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 153 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 82/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y ++N IS+IA++ IS L K++ L G ++T RG+ Sbjct: 1 MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + I I VV+ TE F +AECF + C + C L +V +A AF Sbjct: 61 GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCQLKNVFWEARCAFIA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ +V+N+S ++ Sbjct: 121 VLDRYTLADIVKNKSQLRSSLQ 142 >gi|13471232|ref|NP_102801.1| iron-responsive transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14021976|dbj|BAB48587.1| Aau3 protein [Mesorhizobium loti MAFF303099] Length = 153 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 81/142 (57%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA +ND +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y+I +V R +++ + Sbjct: 121 VLARYTIADMVAARPNVRNLLG 142 >gi|163758625|ref|ZP_02165712.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43] gi|162283915|gb|EDQ34199.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43] Length = 149 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 84/142 (59%), Positives = 108/142 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++ +RI IA+A +SELFLFKILQPL KAG+VE+VRGR Sbjct: 1 MRLTRQTNYAVRMLMYCAANDGNLSRIGDIAKAYSVSELFLFKILQPLTKAGLVESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R AD+IT+LDVV TE+SF +AECF + +CPLV SCGL + LRKAL AFF+ Sbjct: 61 NGGIRLGRAADKITLLDVVSVTEDSFAMAECFENDATECPLVDSCGLNTALRKALGAFFE 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL YSI+ LV+ R SI + Sbjct: 121 VLATYSIDDLVKARPSINFLLG 142 >gi|77166414|ref|YP_344939.1| hypothetical protein Noc_2967 [Nitrosococcus oceani ATCC 19707] gi|254435367|ref|ZP_05048874.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27] gi|76884728|gb|ABA59409.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207088478|gb|EDZ65750.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27] Length = 153 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 82/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y ++N IS+IA++ IS L K++ L G ++T RG+ Sbjct: 1 MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + I I VV+ TE F +AECF + C + C L +V +A AF Sbjct: 61 GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCELKNVFWEARCAFIA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ +V+N+S ++ Sbjct: 121 VLDRYTLADIVKNKSQLRSSLQ 142 >gi|121535959|ref|ZP_01667753.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] gi|121305451|gb|EAX46399.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] Length = 148 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + A+H P + +A+ ISE +L +++ L KAG V++VRG Sbjct: 1 MKLSTKGRYGVAAMYDLALHYGQGPISLKNVAKRQGISEHYLEQLMGILRKAGYVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +IT+ D+++ E +C + C C V K ++ Sbjct: 61 SQGGYTLTKDPAEITVGDIIRIMEGPIAPVDCLLTDNNSCKRADICVTRGVWAKVRDSIS 120 Query: 120 DVLTQYSIECLVRNRSS 136 VL S+ L R Sbjct: 121 QVLDSISLADLCREEKD 137 >gi|319783139|ref|YP_004142615.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169027|gb|ADV12565.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 154 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 79/142 (55%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R+LMYCA ++D +RI +IA A +SELFLFKILQPLV+ G+V+TVRGR Sbjct: 1 MRLTRQTNYAMRILMYCAANDDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF Sbjct: 61 NGGVKLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y+I LV R +++ + Sbjct: 121 VLARYTIADLVAARPNVRNLLG 142 >gi|256015338|ref|YP_003105347.1| RrF2 family protein [Brucella microti CCM 4915] gi|255997998|gb|ACU49685.1| RrF2 family protein [Brucella microti CCM 4915] Length = 153 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 79/142 (55%), Positives = 106/142 (74%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F + ECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMTECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142 >gi|307947490|ref|ZP_07662823.1| protein Aau3 [Roseibium sp. TrichSKD4] gi|307769308|gb|EFO28536.1| protein Aau3 [Roseibium sp. TrichSKD4] Length = 153 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 66/141 (46%), Positives = 100/141 (70%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R LMYCA++ D P+R++ IA + +SE LFKI++ LV A +++T+RGR Sbjct: 1 MRLTQQTNYAVRALMYCAVNPDKPSRVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L +PA+ I++ +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF + Sbjct: 61 NGGVMLAKPAETISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL SI L +R ++++ Sbjct: 121 VLDTKSIADLSEDRFGMRELL 141 >gi|23500306|ref|NP_699746.1| iron-responsive transcriptional regulator [Brucella suis 1330] gi|161620624|ref|YP_001594510.1| iron-responsive transcriptional regulator [Brucella canis ATCC 23365] gi|254702937|ref|ZP_05164765.1| iron-responsive transcriptional regulator [Brucella suis bv. 3 str. 686] gi|260568151|ref|ZP_05838620.1| RrF2 family protein [Brucella suis bv. 4 str. 40] gi|261753543|ref|ZP_05997252.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|23463917|gb|AAN33751.1| RrF2 family protein [Brucella suis 1330] gi|161337435|gb|ABX63739.1| rrf2 family protein [Brucella canis ATCC 23365] gi|260154816|gb|EEW89897.1| RrF2 family protein [Brucella suis bv. 4 str. 40] gi|261743296|gb|EEY31222.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 153 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 81/142 (57%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLVK G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVKHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142 >gi|118589790|ref|ZP_01547195.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614] gi|118437876|gb|EAV44512.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614] Length = 154 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 66/141 (46%), Positives = 100/141 (70%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y +R LMYCA++ D P++++ IA + +SE LFKI++ LV A +++T+RGR Sbjct: 1 MRLTQQTNYAVRALMYCAVNPDKPSKVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L RPA++I++ +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF + Sbjct: 61 NGGVMLARPAEKISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL SI L +R ++ + Sbjct: 121 VLDGKSIADLSEDRFGMRDLL 141 >gi|17989052|ref|NP_541685.1| iron-responsive transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|148557978|ref|YP_001257553.1| iron-responsive transcriptional regulator [Brucella ovis ATCC 25840] gi|225686349|ref|YP_002734321.1| iron-responsive transcriptional regulator [Brucella melitensis ATCC 23457] gi|254699801|ref|ZP_05161629.1| iron-responsive transcriptional regulator [Brucella suis bv. 5 str. 513] gi|254705944|ref|ZP_05167772.1| iron-responsive transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|254711169|ref|ZP_05172980.1| iron-responsive transcriptional regulator [Brucella pinnipedialis B2/94] gi|254720448|ref|ZP_05182259.1| iron-responsive transcriptional regulator [Brucella sp. 83/13] gi|256029550|ref|ZP_05443164.1| iron-responsive transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|256043455|ref|ZP_05446384.1| iron-responsive transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256059242|ref|ZP_05449448.1| iron-responsive transcriptional regulator [Brucella neotomae 5K33] gi|256111523|ref|ZP_05452537.1| iron-responsive transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|256157745|ref|ZP_05455663.1| iron-responsive transcriptional regulator [Brucella ceti M490/95/1] gi|256253285|ref|ZP_05458821.1| iron-responsive transcriptional regulator [Brucella ceti B1/94] gi|256262513|ref|ZP_05465045.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|260167360|ref|ZP_05754171.1| iron-responsive transcriptional regulator [Brucella sp. F5/99] gi|260564653|ref|ZP_05835138.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|261220398|ref|ZP_05934679.1| transcriptional regulator [Brucella ceti B1/94] gi|261313373|ref|ZP_05952570.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261318761|ref|ZP_05957958.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261323195|ref|ZP_05962392.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750271|ref|ZP_05993980.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261756768|ref|ZP_06000477.1| RrF2 family protein [Brucella sp. F5/99] gi|265985470|ref|ZP_06098205.1| transcriptional regulator [Brucella sp. 83/13] gi|265986559|ref|ZP_06099116.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265989875|ref|ZP_06102432.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993019|ref|ZP_06105576.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265996251|ref|ZP_06108808.1| transcriptional regulator [Brucella ceti M490/95/1] gi|294853640|ref|ZP_06794312.1| rirA [Brucella sp. NVSL 07-0026] gi|306839690|ref|ZP_07472493.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] gi|306841790|ref|ZP_07474476.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] gi|306845894|ref|ZP_07478462.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] gi|17984895|gb|AAL53949.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M] gi|148369263|gb|ABQ62135.1| RrF2 family protein [Brucella ovis ATCC 25840] gi|225642454|gb|ACO02367.1| Transcriptional regulator, Rrf2 family protein [Brucella melitensis ATCC 23457] gi|260152296|gb|EEW87389.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|260918982|gb|EEX85635.1| transcriptional regulator [Brucella ceti B1/94] gi|261297984|gb|EEY01481.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261299175|gb|EEY02672.1| transcriptional regulator [Brucella neotomae 5K33] gi|261302399|gb|EEY05896.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261736752|gb|EEY24748.1| RrF2 family protein [Brucella sp. F5/99] gi|261740024|gb|EEY27950.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262550548|gb|EEZ06709.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262763889|gb|EEZ09921.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263000544|gb|EEZ13234.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092248|gb|EEZ16545.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|264658756|gb|EEZ29017.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264664062|gb|EEZ34323.1| transcriptional regulator [Brucella sp. 83/13] gi|294819295|gb|EFG36295.1| rirA [Brucella sp. NVSL 07-0026] gi|306273786|gb|EFM55624.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] gi|306288195|gb|EFM59582.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] gi|306405270|gb|EFM61546.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] gi|326410717|gb|ADZ67781.1| iron-responsive transcriptional regulator [Brucella melitensis M28] gi|326554010|gb|ADZ88649.1| iron-responsive transcriptional regulator [Brucella melitensis M5-90] Length = 153 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142 >gi|85714888|ref|ZP_01045874.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A] gi|85698374|gb|EAQ36245.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A] Length = 150 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 80/142 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A+ +D + I++IA + +SE L K++ L AG +ETVRGR Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDVSEAHLMKVVHQLGVAGYIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA+ I + +V++ TE + C C + SC L L +A AF + Sbjct: 61 GGGLRLAKPAEAIRLAEVIRTTEPDMAIVSCLKPLNAPCMINPSCVLKRALERAQQAFME 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L R+ + + Sbjct: 121 VLEGYTLADLTAPRARLSSLLG 142 >gi|292490559|ref|YP_003525998.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291579154|gb|ADE13611.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus Nc4] Length = 153 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 83/141 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y ++H++ IS+IA + IS L K++ L G ++T RG+ Sbjct: 1 MQLTQYTDYSLRVLIYLSLHDEQLATISEIASSYNISRNHLGKVVHNLANLGYIDTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + ++I + +V+ TE F VAECF + C + C L V +A AF Sbjct: 61 GGGMRLSQAPEKINLGRIVQQTEGRFDVAECFNTTHNTCSISSCCQLKDVFWEARCAFLA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++ +++N++ ++ Sbjct: 121 VLNRYTLADVIKNKNELRSSL 141 >gi|62317580|ref|YP_223433.1| iron-responsive transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269562|ref|YP_418853.1| iron-responsive transcriptional regulator [Brucella melitensis biovar Abortus 2308] gi|189022834|ref|YP_001932575.1| iron-responsive transcriptional regulator [Brucella abortus S19] gi|254691079|ref|ZP_05154333.1| iron-responsive transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|254695615|ref|ZP_05157443.1| iron-responsive transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|254698864|ref|ZP_05160692.1| iron-responsive transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254732311|ref|ZP_05190889.1| iron-responsive transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|256256264|ref|ZP_05461800.1| iron-responsive transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260544818|ref|ZP_05820639.1| RrF2 family protein [Brucella abortus NCTC 8038] gi|260756675|ref|ZP_05869023.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260760106|ref|ZP_05872454.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260763344|ref|ZP_05875676.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882492|ref|ZP_05894106.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261216014|ref|ZP_05930295.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|297249620|ref|ZP_06933321.1| rirA, iron-responsive transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|62197773|gb|AAX76072.1| RrF2 family protein [Brucella abortus bv. 1 str. 9-941] gi|82939836|emb|CAJ12844.1| Protein of unknown function UPF0074 [Brucella melitensis biovar Abortus 2308] gi|189021408|gb|ACD74129.1| RrF2 family protein [Brucella abortus S19] gi|260098089|gb|EEW81963.1| RrF2 family protein [Brucella abortus NCTC 8038] gi|260670424|gb|EEX57364.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673765|gb|EEX60586.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676783|gb|EEX63604.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872020|gb|EEX79089.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260917621|gb|EEX84482.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|297173489|gb|EFH32853.1| rirA, iron-responsive transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 153 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142 >gi|298247883|ref|ZP_06971688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297550542|gb|EFH84408.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 152 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 60/143 (41%), Positives = 83/143 (58%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MHLT TDY +RVL+Y A + D I IA+ IS L KI+ L K G +ET+RG Sbjct: 1 MHLTYHTDYALRVLLYLAAYPDTQLANIQDIADTYTISSNHLMKIVHKLGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL R I I +VV+ TEE FF+ ECF S C + C L + L++AL AF Sbjct: 61 RNGGMRLARKPADIRIGEVVRQTEEDFFLVECFDSEHNCCVITPVCNLRTALQEALTAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ L N++ +++ Sbjct: 121 SVLDKYTLADLTSNKALYQRLIT 143 >gi|49475376|ref|YP_033417.1| iron-responsive transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238182|emb|CAF27391.1| hypothetical protein BH05830 [Bartonella henselae str. Houston-1] Length = 155 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 78/140 (55%), Positives = 107/140 (76%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA+A +SELFLFKILQPLV+AG V+TVRGR Sbjct: 1 MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DVVK TE++F +AECF + K +CPL+ C L + L+KALNAFFD Sbjct: 61 NGGVKLAKPAAEISVADVVKVTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFD 120 Query: 121 VLTQYSIECLVRN--RSSIK 138 VL+ S+ L R R+ +K Sbjct: 121 VLSVISLADLQRPSFRNQLK 140 >gi|254443774|ref|ZP_05057250.1| rrf2 family protein (putative transcriptional regulator) [Verrucomicrobiae bacterium DG1235] gi|198258082|gb|EDY82390.1| rrf2 family protein (putative transcriptional regulator) [Verrucomicrobiae bacterium DG1235] Length = 144 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 83/141 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TDY +R+L+Y ++ + +++IA+A IS+ L KI L + GIV RG+ Sbjct: 1 MELTKFTDYSLRMLLYLGLNEERLVSLTEIADAYSISKNHLVKISAHLSQNGIVAATRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + +I I VV++TE + ECF C + +C L SVL+KA AF+ Sbjct: 61 GGGIRLAKQPHEINIGTVVRSTEGHTPLVECFDPENNRCCITKNCTLKSVLKKAEKAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Q++++ L++NR + F Sbjct: 121 ELDQHTLQDLLKNRKGLAATF 141 >gi|163844714|ref|YP_001622369.1| iron-responsive transcriptional regulator [Brucella suis ATCC 23445] gi|163675437|gb|ABY39547.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC 23445] Length = 153 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142 >gi|239827060|ref|YP_002949684.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. WCH70] gi|239807353|gb|ACS24418.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70] Length = 147 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ + + I +I++ ISE L KI+ L K G +ET+RG Sbjct: 1 MQLTNYTEYALRVLLFLGTLDPEEKTNIKEISKTFSISENHLSKIVYELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL R ++I I VV+ TEE+ + ECFA H C L C L VL +AL +F Sbjct: 61 RNGGIRLARKPEEIRIGSVVRNTEENLSLVECFAGHGNHCVLTPVCQLKRVLHEALGSFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ L+ N+ ++ IF Sbjct: 121 QVLDSYTLADLLSNKQHLQMIF 142 >gi|312135466|ref|YP_004002804.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311775517|gb|ADQ05004.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor owensensis OL] Length = 150 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +ITI ++++A E S +EC K+DCP C V K A Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIE 122 Query: 120 DVLTQYSIECLVRNRSSI 137 +V+ +++ LV + + Sbjct: 123 NVVDSVTLQDLVDDYKKM 140 >gi|75674940|ref|YP_317361.1| hypothetical protein Nwi_0743 [Nitrobacter winogradskyi Nb-255] gi|74419810|gb|ABA04009.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter winogradskyi Nb-255] Length = 150 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 77/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A+ +D + I++IA + +SE L K++ L AG +ETVRGR Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYNVSEAHLMKVVHQLGVAGYIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP + I + +V++ TE V C C + C L + +A AF D Sbjct: 61 GGGLRLARPVEAIGLAEVIRMTEPDMAVVSCLKPLNAPCKINPCCVLKRAMERAQQAFMD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ LV + + Sbjct: 121 VLEGYTLADLVVPSGRLSNLLG 142 >gi|146297253|ref|YP_001181024.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410829|gb|ABP67833.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 150 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIATLKKAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +ITI ++++A E S AEC K+DCP C V K A Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPAECIDDIEKVDCPRADFCVTKKVWEKVKKAIE 122 Query: 120 DVLTQYSIECLVRNRSSI 137 V+ +++ LV + + Sbjct: 123 SVVDSITLQDLVDDYKKM 140 >gi|91790549|ref|YP_551501.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666] gi|91699774|gb|ABE46603.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666] Length = 156 Score = 178 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 55/141 (39%), Positives = 79/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A I++IA A +SE L K++ L K G + VRG+ Sbjct: 1 MKLTAFTDYSLRVLIYLAAQPQQRATIAEIATAFDVSENHLSKVVHCLGKNGWLANVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L P + I + VV+ TE VAECF+ C + C L VL +A+ AF Sbjct: 61 GGGLELAMPPELIGVGAVVRQTEGVAVVAECFSDKGNHCSITRVCRLRGVLGEAVEAFHA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++ LV+NR S+ ++ Sbjct: 121 VLDRYTLADLVQNRQSLARVL 141 >gi|311031562|ref|ZP_07709652.1| nitric oxide sensitive transcriptional regulator [Bacillus sp. m3-13] Length = 158 Score = 178 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT TDY +RVL+Y A + +I +IAEA IS+ L K+ L K G VET+R Sbjct: 1 MKLTLYTDYSLRVLLYLASAPENNKLIQIKEIAEAYGISKNHLMKVTFHLGKLGYVETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L + ++ I ++V+ TEE F + ECF H C + C L VL +A AF Sbjct: 61 GRNGGLLLAKEPKELNIGELVRQTEEDFHIVECFQDH-ASCVISPHCKLKGVLYQATQAF 119 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL QY++ L+ N+ + + Sbjct: 120 ISVLDQYTLADLITNKEQLTTLL 142 >gi|225388530|ref|ZP_03758254.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme DSM 15981] gi|225045409|gb|EEG55655.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme DSM 15981] Length = 144 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ A+H D P +I IA+ IS +L +I+ L +AG V ++RG Sbjct: 1 MLISTKGRYALRTMVDLALHADGEPVKIKDIAKRQEISGKYLEQIISILSRAGYVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RPA T+ +++ TE S +C C C + ++ A Sbjct: 61 NQGGYYLARPAKDYTVGMILRVTEGSLAPVDCLTGDDNPCARQQECVTLKLWKELDGAIR 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 DV+ Y+++ LV+ + +++ + Sbjct: 121 DVVDGYTLDDLVQWQRAMQDNY 142 >gi|239626143|ref|ZP_04669174.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520373|gb|EEQ60239.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 144 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ AIH D P +I IA IS +L +I+ L +AG V ++RG Sbjct: 1 MLVSTKGRYALRTMVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGYVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L +PA + T+ +++ TE S +C + + C C + R+ A Sbjct: 61 NQGGYYLAKPAAEYTVGMILRVTEGSLAPVDCLSGGENPCTRQMDCVTLRLWRELDEAIS 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 V+ +Y++E LV+ R ++K + Sbjct: 121 GVVDRYTLEDLVQWRRNMKDNY 142 >gi|49474135|ref|YP_032177.1| iron-responsive transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239639|emb|CAF25998.1| aau3 protein [Bartonella quintana str. Toulouse] Length = 148 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 77/140 (55%), Positives = 105/140 (75%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI IA+A ISE FLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCADNQGSLSRIPDIAKAYAISEFFLFKILQPLVEAGFIQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L +PA +I++ DVVK TE++F +AECF + K +CPL+ CGL + L+KALNAFFD Sbjct: 61 NGGIKLAKPAAEISVADVVKVTEDNFSMAECFNTAKSNCPLIDFCGLNTALQKALNAFFD 120 Query: 121 VLTQYSIECLVRN--RSSIK 138 VL+ S+ L R R+ +K Sbjct: 121 VLSMISLADLQRRSFRNQLK 140 >gi|312127257|ref|YP_003992131.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777276|gb|ADQ06762.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor hydrothermalis 108] Length = 150 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +ITI ++++A E S +EC ++DCP C V K A Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIE 122 Query: 120 DVLTQYSIECLVRNRSSI 137 +V+ +++ LV + + Sbjct: 123 NVVDSVTLQDLVDDYKKM 140 >gi|319408357|emb|CBI82010.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 137 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 74/130 (56%), Positives = 99/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + D + I +IA+ ISELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKKTNYALRILMYCASNQDSLSSIPEIAKTYAISELFLFKILQPLVEAGFLQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L +PA +I++ DVVK E++F +AECF +++CPLV SC L VL+ ALNAFFD Sbjct: 61 NGGIKLAKPATEISVADVVKIIEDNFSMAECFDKTEVNCPLVNSCNLNIVLKNALNAFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSTTSISDL 130 >gi|312793908|ref|YP_004026831.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877395|ref|ZP_07737360.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|311795869|gb|EFR12233.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|312181048|gb|ADQ41218.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 150 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKNIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +ITI ++++A E S +EC ++DCP C V K A Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIE 122 Query: 120 DVLTQYSIECLVRNRSSI 137 +V+ +++ LV + + Sbjct: 123 NVVDSVTLQDLVDDYKKM 140 >gi|240850269|ref|YP_002971662.1| iron-responsive transcriptional regulator [Bartonella grahamii as4aup] gi|240267392|gb|ACS50980.1| iron-responsive transcriptional regulator [Bartonella grahamii as4aup] Length = 147 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 71/130 (54%), Positives = 99/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +R+ +IA+A +SELFLFKILQ LV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCADNQGTLSRVPEIAKAYAVSELFLFKILQLLVQAGFIQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA +I++ DVVK TE++F +AECF + + CPL+ C L + L+KALNAFF+ Sbjct: 61 NGGVRLAKPAAEISVADVVKVTEDNFSLAECFDTAEPTCPLIDFCSLNTALQKALNAFFE 120 Query: 121 VLTQYSIECL 130 VL+ S+ L Sbjct: 121 VLSVISLADL 130 >gi|254712372|ref|ZP_05174183.1| iron-responsive transcriptional regulator [Brucella ceti M644/93/1] gi|254715444|ref|ZP_05177255.1| iron-responsive transcriptional regulator [Brucella ceti M13/05/1] gi|261217178|ref|ZP_05931459.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261320049|ref|ZP_05959246.1| transcriptional regulator [Brucella ceti M644/93/1] gi|260922267|gb|EEX88835.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261292739|gb|EEX96235.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 153 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 80/142 (56%), Positives = 107/142 (75%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR Sbjct: 1 MRLTRQTNYTIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +YSI LV+ R +++ + Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142 >gi|296133417|ref|YP_003640664.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR] gi|296031995|gb|ADG82763.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR] Length = 149 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ + A H + P + IAE +SE +L +++ L KAG+V++VRG Sbjct: 1 MKVSTKGHYGVQAMFDLAQHFGEGPVSLKSIAERQGLSEPYLEQLIAVLRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R I + D+++ E EC + + C C SV K + Sbjct: 61 AQGGYILAREPRDIKVGDIIRVLEGPIAPVECVSQDDPEHCLKFDFCVTKSVWEKVKKSI 120 Query: 119 FDVLTQYSIECLVRNRSS 136 +VL ++ ++++ Sbjct: 121 EEVLDSITLADMLKDAEE 138 >gi|222529700|ref|YP_002573582.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312622077|ref|YP_004023690.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|222456547|gb|ACM60809.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor bescii DSM 6725] gi|312202544|gb|ADQ45871.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor kronotskyensis 2002] Length = 150 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 2/138 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +ITI ++++A E S +EC ++DCP C V K A Sbjct: 63 QGGYMLSRDPSKITIGEILRALEGSLSPSECIDDLDRVDCPRAEFCVTRKVWEKVKEAIE 122 Query: 120 DVLTQYSIECLVRNRSSI 137 V+ +++ LV + + Sbjct: 123 KVVDSVTLQDLVDDYKKM 140 >gi|138895291|ref|YP_001125744.1| hypothetical protein GTNG_1635 [Geobacillus thermodenitrificans NG80-2] gi|196250928|ref|ZP_03149612.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] gi|134266804|gb|ABO66999.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196209569|gb|EDY04344.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] Length = 148 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 86/142 (60%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ + I +I+ +SE L KI+ L K G +ET+RG Sbjct: 1 MQLTSYTEYALRVLLFLGTLDEGEKTNIKEISTIFSLSEHHLSKIVHELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I + VV+ TE++ + ECFASH +C L +C L VLR+AL AF Sbjct: 61 RNGGIRLAKRPEEIIVGAVVRETEDNLSLVECFASHGNECILTPACRLRFVLREALEAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ L+ NR+S++ + Sbjct: 121 RVLDTYTLADLLENRTSLRALL 142 >gi|197106638|ref|YP_002132015.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196480058|gb|ACG79586.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 148 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+ +RVLMY A+H D I++IA IS+ L K++ L +AG +ETVRG+ Sbjct: 1 MRLTGYTDFALRVLMYIAVHPDRRPTIAEIAAGYGISKNHLMKVVFDLGRAGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA+ I + ++V+ TE +A C C + +C L VL +A AF D Sbjct: 61 NGGLRLARPAESIGVGELVRRTEGDMALAPCLGRADG-CVITPACRLKGVLVEARTAFMD 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y+I L R S++ + Sbjct: 120 VLDRYTIADLARQPESLRALLG 141 >gi|255505326|ref|ZP_05345447.3| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] gi|255268340|gb|EET61545.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] Length = 153 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+ P R+ IA+ IS ++ +I+ L KAG ++++RG Sbjct: 10 MKISTKGRYALRIMLDIAVMGGSEPVRVKDIAKRQEISVKYMEQIVTILSKAGYLKSIRG 69 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R T+ +++ TE S C CP C + R+ A Sbjct: 70 PQGGYRLARQPKDYTVGMILRLTEGSLAPVACLEDEPNLCPRQEQCVTLRLWRELDEAIR 129 Query: 120 DVLTQYSIECLVRNRSSI 137 V+ +Y++E L + + + Sbjct: 130 GVVDKYTLEDLAQWQQEM 147 >gi|323489216|ref|ZP_08094448.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323397103|gb|EGA89917.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 144 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+ +RVL+Y D I +I+EA IS+ L K+ L KAG ++TVRG Sbjct: 1 MRLTMYTDFSLRVLIYLGTKKPDKLTTIQEISEAYNISKNHLTKVTFELGKAGFIQTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL I + VV+ E+ F + ECF CP+ CGL VL KAL+A+ Sbjct: 61 RGGGIRLADLPQNINVGTVVRKMEDDFHLVECFDPATNRCPISPVCGLRGVLGKALHAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++E L+ N+ +++I Sbjct: 121 TVLDEYTLEDLLFNKEGLREIL 142 >gi|157827027|ref|YP_001496091.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389] gi|157802331|gb|ABV79054.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 149 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 69/134 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A I +IAE IS L K++ L + G + + +G+ Sbjct: 14 MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 73 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P I + D+++ E + + ECF C + SC +++A NAF Sbjct: 74 GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 133 Query: 121 VLTQYSIECLVRNR 134 L Y++E + N+ Sbjct: 134 TLNNYTLEDAINNK 147 >gi|167629932|ref|YP_001680431.1| transcriptional regulator, rrf2 family [Heliobacterium modesticaldum Ice1] gi|167592672|gb|ABZ84420.1| transcriptional regulator, rrf2 family [Heliobacterium modesticaldum Ice1] Length = 150 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A+ P + +AE ISE +L +I+ L KAG+V ++RG Sbjct: 1 MKLSTKGQYGVRAMFELAMQYGQGPVSLKLVAERQDISEHYLEQIIAGLRKAGLVNSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L R +IT+ D+++ E +C C C V K ++ Sbjct: 61 AQGGYVLARDPAEITVGDIIRVLEGPVAPVDCVNDDIPERCTRASQCISKRVWAKVRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V+ ++ + ++ +K Sbjct: 121 EQVIDSITLADMCKDAEKMK 140 >gi|56420273|ref|YP_147591.1| hypothetical protein GK1738 [Geobacillus kaustophilus HTA426] gi|261419938|ref|YP_003253620.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC61] gi|297530100|ref|YP_003671375.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. C56-T3] gi|319766752|ref|YP_004132253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC52] gi|81347283|sp|Q5KZ63|NSRR_GEOKA RecName: Full=HTH-type transcriptional regulator nsrR gi|56380115|dbj|BAD76023.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261376395|gb|ACX79138.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC61] gi|297253352|gb|ADI26798.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. C56-T3] gi|317111618|gb|ADU94110.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC52] Length = 147 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT T+Y +RVL++ A+ + I IA A ISE L KI+ L K G +ET+RG Sbjct: 1 MQLTNYTEYALRVLLFLGALDEEEKTNIKDIAAAFSISEHHLSKIVYELGKLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + +I I VV+ TEE+ + ECFA+H +C L C L L +AL AF Sbjct: 61 RNGGIRLAKRPAEIVIGAVVRETEENLSLVECFAAHGNECVLTPVCRLRFALHEALEAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ L+ +R+S++ + Sbjct: 121 RVLDAYTLADLLEDRASLRSLL 142 >gi|157691675|ref|YP_001486137.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680433|gb|ABV61577.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 143 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+ +RVL+Y A N+ + I QIA+ IS+ L K++ L K G VET+RG Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYDISKNHLTKVIYHLGKRGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + + I I +VV+ TE+ + ECF K C + C L VL +AL+A+ Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALSAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY+++ L +N+ +++++ Sbjct: 121 RVLDQYTLKDLTQNKDALRELL 142 >gi|134094873|ref|YP_001099948.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133738776|emb|CAL61823.1| HTH-type transcriptional regulator nsrR [Herminiimonas arsenicoxydans] Length = 159 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 75/136 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R LMY ++ D I IA+ IS+ L K++ L +G+VETVRGR Sbjct: 1 MRLTSYTDYALRTLMYLGMNRDNLVTIQDIADLHGISKNHLMKVVHQLGLSGMVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L I I +VV+ TE FF+AECF C SC L VL A+ A+ Sbjct: 61 NGGLKLGHEPADINIGEVVRNTETDFFMAECFDPASNACVYAPSCILKGVLNDAIEAYLA 120 Query: 121 VLTQYSIECLVRNRSS 136 VL ++ L+ +++ Sbjct: 121 VLNNVTLADLIAQKNA 136 >gi|332981928|ref|YP_004463369.1| BadM/Rrf2 family transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699606|gb|AEE96547.1| transcriptional regulator, BadM/Rrf2 family [Mahella australiensis 50-1 BON] Length = 149 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ ++ A++ + P + +AE ISE +L +++ L KAG+V++VRG Sbjct: 1 MKLSTKGRYGLTAMLDLALNYGEEPVALKNVAERQGISEPYLEQLIAGLRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E +C + + C C + K ++ Sbjct: 61 AQGGYILAYPPDKITVGDVMRVLEGPLAPVDCVIENEPVSCEKADHCVTRIIWEKIRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V+ +++ +V + I Sbjct: 121 NQVVDSITLQDMVDEYNRIN 140 >gi|313905467|ref|ZP_07838831.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469651|gb|EFR64989.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 144 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+H++ P RI I+ IS +L +I+ LV+A +++VRG Sbjct: 1 MKISTKGRYALRMMLDIALHDNGVPVRIKDISARQEISLKYLEQIVSALVRAKYLKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + A + T+ D+++ TE S EC A DCP GSC + + A Sbjct: 61 PQGGYLLAKKASEYTVGDILRVTEGSLSPVECLAGDVNDCPRRGSCVTLRLWEELDEAIS 120 Query: 120 DVLTQYSIECL 130 V+ Y+IE L Sbjct: 121 KVVDSYTIEDL 131 >gi|298290421|ref|YP_003692360.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296926932|gb|ADH87741.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 151 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +RV++Y A D P IS++A A IS+ L K++ L +AG V + RGR Sbjct: 1 MRLTRYSDYAMRVMLYLAARGDRPCSISEMAAAYGISQNHLMKVMNDLGRAGYVASTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA++I + D+++ TE+ + +C C L CGL+SVL +AL AF Sbjct: 61 NGGFRLARPANEIVVGDLLRHTEDDLDLVDC-----PRCVLSRGCGLSSVLDEALMAFLA 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++ L+ R + + Sbjct: 116 VLDRYTLADLIDRRQGFQSLL 136 >gi|119944403|ref|YP_942083.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas ingrahamii 37] gi|119863007|gb|ABM02484.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas ingrahamii 37] Length = 147 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 88/144 (61%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +R+L+Y AI+ND + I++IA++ IS+ L KI+Q L G + +RG+ Sbjct: 1 MHITRYTDYSLRILIYLAINNDQLSTINEIAQSYHISKNHLMKIVQQLNVKGYLLAIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L R I I +V+ E+S + ECF+ + C + SC L + +A +FF+ Sbjct: 61 NGGIKLNRDPGDINIGSLVREMEDSNKLVECFSDNN-HCVISPSCQLKGIFAEAQESFFN 119 Query: 121 VLTQYSIECL--VRNRSSIKKIFN 142 L +Y++ L V+ ++ + ++ + Sbjct: 120 TLDKYTLADLVAVKRQTELGELLD 143 >gi|163868066|ref|YP_001609270.1| iron-responsive transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161017717|emb|CAK01275.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 144 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 72/132 (54%), Positives = 101/132 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +R+S+IA+A +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCADNQGSLSRVSEIAKAYAVSELFLFKILQPLVQAGFIQTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + + CPL+ C L L+KAL+AFFD Sbjct: 61 NGGVKLAKPATEISVADVLKVTEDNFSLAECFDNAEPTCPLIDFCSLNIALQKALSAFFD 120 Query: 121 VLTQYSIECLVR 132 VL+ S+ L R Sbjct: 121 VLSVISLADLQR 132 >gi|302871528|ref|YP_003840164.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor obsidiansis OB47] gi|302574387|gb|ADL42178.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor obsidiansis OB47] Length = 150 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +ITI ++++A E S +EC K+DCP C V K A Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIE 122 Query: 120 DVLTQYSIECLVRNRSSI 137 +V+ +++ LV + + Sbjct: 123 NVVDSVTLQNLVDDYKKM 140 >gi|260438134|ref|ZP_05791950.1| iron-sulfur cluster assembly transcription factor IscR [Butyrivibrio crossotus DSM 2876] gi|292809459|gb|EFF68664.1| iron-sulfur cluster assembly transcription factor IscR [Butyrivibrio crossotus DSM 2876] Length = 144 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A++ ND P I +IA ISE +L +I+ L AG V ++RG Sbjct: 1 MKVSTKGRYALRLMIDIAVNSNDKPVSIKEIARRQGISEKYLEQIISILNSAGFVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + T+ +++ TE S C + + C V +C V R+ +A Sbjct: 61 AQGGYVLRKEPSEYTVGMILRLTEGSLAPVACIEDNVVQCDRVENCATIEVWRRLNDAIN 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 V+ ++ LV +++ K+ + Sbjct: 121 GVVDNITLADLVEWQNNNKENYT 143 >gi|194014188|ref|ZP_03052805.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC 7061] gi|194013214|gb|EDW22779.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC 7061] Length = 143 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+ +RVL+Y A N+ + I QIA+ IS+ L K++ L K G VET+RG Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYGISKNHLTKVIYHLGKRGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + + I I +VV+ TE+ + ECF K C + C L VL +AL A+ Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALTAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y+++ L +N+ +++++ Sbjct: 121 RVLDKYTLKDLTQNKDALRELL 142 >gi|218134234|ref|ZP_03463038.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC 43243] gi|217991609|gb|EEC57615.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC 43243] Length = 144 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A++N P R+ I++ IS+ +L +I+ L KAG V ++RG Sbjct: 1 MKISTRGRYALRMMLDLAVNNNGEPIRLKDISKRQGISDKYLEQIISILNKAGFVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + T+ +++ TE S C DC C + K +A Sbjct: 61 PQGGYMLNREPKEYTVGMILRLTEGSLAPVACLDYEPNDCERRNECVTLILWEKLNDAIK 120 Query: 120 DVLTQYSIECLVR 132 V+ +++ LV+ Sbjct: 121 SVVDNITLQDLVQ 133 >gi|304393239|ref|ZP_07375167.1| protein Aau3 [Ahrensia sp. R2A130] gi|303294246|gb|EFL88618.1| protein Aau3 [Ahrensia sp. R2A130] Length = 158 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK+T+Y +R+LMYCA H R+S +A +S+ F+ K+LQ KAG V+T+RGR Sbjct: 1 MQITKQTNYALRMLMYCAAHEGS-VRLSDVATFYGLSQSFMHKVLQTTSKAGFVKTMRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP ++IT+ +VV+A E+ F +AECF CPL SCGL +AL+AF Sbjct: 60 SGGLMLARPPEEITVGEVVRAVEDRFEMAECF-REDTTCPLEQSCGLNGAFHEALDAFLT 118 Query: 121 VLTQYSIECLVRNRSSIKKI 140 VL +++I + R++I + Sbjct: 119 VLDKHTIADITNERANINVL 138 >gi|299538188|ref|ZP_07051473.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726390|gb|EFI66980.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 145 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + + I +I++A IS+ L K+ L G +ET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+ Sbjct: 61 RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 +VL QY+++ + ++ + + Sbjct: 121 NVLDQYTLDDFLHSKEKLMALL 142 >gi|171915867|ref|ZP_02931337.1| HTH-type transcriptional regulator [Verrucomicrobium spinosum DSM 4136] Length = 160 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 78/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +DY +RVLMY A +S++ +A +S L KI+ L K G + RGR Sbjct: 1 MELSRFSDYSLRVLMYAAAREHEKVTLSELTQAYRVSHHHLVKIVHFLGKQGYLSNRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I + DV++ TE F + ECF C L +C L V R+A +AF D Sbjct: 61 SGGIRLGRAPRDIKVGDVIRHTETHFNLVECFDPANDLCKLSPTCRLRGVFREARDAFLD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++E LV + + ++ + Sbjct: 121 VLDHYTLEDLVVDGKPLLRLLS 142 >gi|91205424|ref|YP_537779.1| putative transcriptional regulator [Rickettsia bellii RML369-C] gi|91068968|gb|ABE04690.1| Putative transcriptional regulator [Rickettsia bellii RML369-C] Length = 136 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 69/134 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A I +IAE IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P I + D+++ E + + ECF C + SC +++A NAF Sbjct: 61 GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 120 Query: 121 VLTQYSIECLVRNR 134 L Y++E + N+ Sbjct: 121 TLNNYTLEDAINNK 134 >gi|311695841|gb|ADP98714.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15] Length = 145 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A+ D I +IA++ IS+ L K++ L K G +ET+RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAVQGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL R I+I +V+ TE+ + ECF+S K C + CGL S+ +AL AF + Sbjct: 61 KGGMRLHRSPSDISIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119 Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142 VL +Y++ ++ ++R + ++ Sbjct: 120 VLDKYTLADVIQEQHRPQLLRLLQ 143 >gi|241765268|ref|ZP_04763249.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] gi|241365059|gb|EER59951.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] Length = 162 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 79/136 (58%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA P IS++AE+ IS L KI+Q L G++ET R Sbjct: 1 MRLTQWTDYTLRVLMYCAASEGRVQPVTISEVAESYGISRSHLTKIVQELSAQGLLETTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA I I VV+ATE F + ECF + C L C L VL +A+ AF Sbjct: 61 GRGGGMRLMKPAGDINIGAVVRATETDFNLVECFDAEHNQCRLSAHCYLKGVLGQAMQAF 120 Query: 119 FDVLTQYSIECLVRNR 134 VL + ++ L+ Sbjct: 121 IAVLDKVTLADLLTQP 136 >gi|325265021|ref|ZP_08131748.1| Rrf2 family protein [Clostridium sp. D5] gi|324029711|gb|EGB90999.1| Rrf2 family protein [Clostridium sp. D5] Length = 152 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A H++ P I+ I++ ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQHSEADPVSITSISDRQGISERYLEQLMSMLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L + ++I++ DV++A E S EC H + C SC V ++ + Sbjct: 61 AGGGYVLAKDLEEISVGDVLRALEGSLEPVECSGLHPEEGCKAADSCVTKYVWQRINESI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 + + + LV + Sbjct: 121 NQTVDEMKLAQLVEESKKM 139 >gi|123440766|ref|YP_001004758.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|189030891|sp|A1JIS1|NSRR_YERE8 RecName: Full=HTH-type transcriptional repressor nsrR gi|122087727|emb|CAL10512.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 141 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138 >gi|225175552|ref|ZP_03729546.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] gi|225168881|gb|EEG77681.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] Length = 149 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A+H + + +A+ ISE +L + L KAG++ +VRG Sbjct: 1 MRLSTKGRYGVRAMFDLALHSGEGAIALKSVAQREHISEKYLEHLFASLKKAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA 117 +GG RL RP ++IT+ D+++ E EC C C + S+ + Sbjct: 61 AQGGYRLARPPEEITLGDIIRVLEGPIAPTECVIDDDGHESCERSTDCVMRSIWGNVRDQ 120 Query: 118 FFDVLTQYSIECLVRNRSSI 137 ++L ++ +V + + Sbjct: 121 INEILDGITLAQIVEEQRKM 140 >gi|163743993|ref|ZP_02151362.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10] gi|161382753|gb|EDQ07153.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10] Length = 154 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 81/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D S+IA C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA +I I DV + E + + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++E L+ + ++ +F Sbjct: 121 SLDGITLEALICDNDALFALFQ 142 >gi|302392704|ref|YP_003828524.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302204781|gb|ADL13459.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium arabaticum DSM 5501] Length = 149 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A+ + P + +IAE IS+ +L +++ L +VE+VRG Sbjct: 1 MQLSTKGRYGVRAMFDLALQQKEGPIPLKEIAERQKISDNYLEQLIAVLKNNRLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P ++I+I D+++A E +A+C C +C + + +K Sbjct: 61 AYGGYLLAKPPEEISIGDIIRALEGPIDLADCVGGR--SCEFEDNCIVELIWQKVKKEID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D+L ++E L++ ++ ++ Sbjct: 119 DILDSITLEDLLQEAANAQQ 138 >gi|332527665|ref|ZP_08403710.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112067|gb|EGJ12043.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 155 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A I +IA SE L K++ L G++ TVRG+ Sbjct: 1 MKLTSFTDYSLRVLIYLATRPGRRATIGEIAAKFSASENHLTKVVHFLGTEGVLATVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP I + D+V+ TE AECF S C + C L VL +A+ AF+ Sbjct: 61 GGGLGLARPPQDIVVGDIVRRTEGEAMPAECFGSGGG-CAIAPCCRLRGVLGEAVEAFYA 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++E LV NR + I Sbjct: 120 VLDRYTLEDLVANRDQLDAIL 140 >gi|238755908|ref|ZP_04617236.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC 29473] gi|238705867|gb|EEP98256.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC 29473] Length = 141 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPPGQMTSISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C + C + +C L VL +A+ F Sbjct: 61 KNGGIRLGKPAENIRIGDVVRELE-PLSLVNCCSDF---CHITPACRLKQVLHQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ + + K+ Sbjct: 117 KELDNYTLADMVKDNAPLYKLL 138 >gi|291523269|emb|CBK81562.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus GD/7] Length = 143 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A ++ P RI IA IS +L +I+ L KAG V+++RG Sbjct: 1 MKISTRGRYALRMMLDIATNDHGEPVRIKDIAARQDISVKYLEQIVSVLTKAGYVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R T+ +++ TE C + DCP + C + ++ A Sbjct: 61 PQGGYRLARLPKDYTVGMILRLTEGDLSPVSC-TDNNYDCPKMQDCVTIRIWKELDEAIN 119 Query: 120 DVLTQYSIECLVRNRSS 136 V+ +Y++E L+ + + Sbjct: 120 SVIDKYTLEDLLDWQDA 136 >gi|270265005|ref|ZP_06193268.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270040939|gb|EFA14040.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 141 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I + DVV+A E + C + C + +C L VL + + F Sbjct: 61 KNGGIRLGKPAETIRLGDVVRALE-PLSLVNCNSDF---CHITPACRLKQVLHQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +++ +V + + K+ Sbjct: 117 EELDSHTLADMVEDNPPLYKLL 138 >gi|74318032|ref|YP_315772.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057527|gb|AAZ97967.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans ATCC 25259] Length = 156 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 58/139 (41%), Positives = 79/139 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R LMY A H D IS+IAE IS+ L K++ L +G+V+T+RGR Sbjct: 1 MRLTTYTDYALRTLMYLATHRDRLVTISEIAEVHGISKNHLMKVVYQLGLSGLVDTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R +IT+ +VV++TE F +AECF C +C L VL A A+ Sbjct: 61 NGGLRLKREPTEITVGEVVRSTETDFDMAECFDPSGDRCLYSPACVLKDVLSSATLAYLG 120 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL + ++ LV KK Sbjct: 121 VLDKVTLGDLVGGGRGRKK 139 >gi|169829842|ref|YP_001700000.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168994330|gb|ACA41870.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 145 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + + I +I+EA IS+ L K+ L G +ET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISEAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+ Sbjct: 61 RGGGIRLAIDPKSITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y+++ + ++ + + Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142 >gi|260431455|ref|ZP_05785426.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260415283|gb|EEX08542.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 148 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 59/142 (41%), Positives = 80/142 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D S+IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHPDRLVTKSEIAEVCNISENHLAQVINQLSQLGYLSTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPADQI I V + E +AECFA CPL +C L L+ A FF Sbjct: 61 NGGMELGRPADQIRIGSVFRHVEGDLPIAECFADADNTCPLTDACRLRLALQDAAEVFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L + +++ LV + + KI Sbjct: 121 SLDEITLDALVCDNDPLLKILQ 142 >gi|163736848|ref|ZP_02144266.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] gi|161389452|gb|EDQ13803.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] Length = 154 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 81/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D S+IA C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA +I I DV + E + + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++E L+ + ++ +F Sbjct: 121 SLDGITLEALICDNDALFALFQ 142 >gi|325678776|ref|ZP_08158374.1| putative HTH-type transcriptional regulator IscR [Ruminococcus albus 8] gi|324109280|gb|EGC03498.1| putative HTH-type transcriptional regulator IscR [Ruminococcus albus 8] Length = 144 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++ A H D I IAE IS+ +L +I+ L +AG V ++RG Sbjct: 1 MKISTKGRYALRLMTDLAEHHQDGYVPIKVIAERQNISDKYLEQIISILSRAGYVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P + T+ +++ TE S C + + C +C + K A Sbjct: 61 AGGGYMLAYPPENYTVGMILRLTEGSLAPVACLETDENLCERAENCPTLFIWEKLYAAIN 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 DV+ ++ +V +++ +N Sbjct: 121 DVVDNITVADIVARKTNAGDFYN 143 >gi|266623212|ref|ZP_06116147.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] gi|288865011|gb|EFC97309.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] Length = 144 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 68/137 (49%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ A+H +I+Q+AE IS+ +L +I+ L +AG V+++RG Sbjct: 1 MKISTKGRYALRMMLEFALHPGECTKINQVAERQQISDKYLEQIVTILSRAGYVKSMRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L + T+ +++ TE S C C G C +V ++ A Sbjct: 61 QGGYYLTKEPSDYTVGMILRLTEGSLAPVACMEDELNQCIRSGHCATLTVWKQLDQAING 120 Query: 121 VLTQYSIECLVRNRSSI 137 V+ ++ LV + + Sbjct: 121 VVDNITLADLVEEQKKL 137 >gi|157368684|ref|YP_001476673.1| transcriptional repressor NsrR [Serratia proteamaculans 568] gi|189030889|sp|A8G8V5|NSRR_SERP5 RecName: Full=HTH-type transcriptional repressor nsrR gi|157320448|gb|ABV39545.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 141 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I + DVV+A E + C + C + +C L VL++ + F Sbjct: 61 KNGGIRLGKPAETIRLGDVVRALE-PLSLVNC---NSTFCHITPACRLKQVLQQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +++ +V + S+ K+ Sbjct: 117 EELDSHTLADMVEDNPSLYKLL 138 >gi|148652572|ref|YP_001279665.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571656|gb|ABQ93715.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp. PRwf-1] Length = 175 Score = 173 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 20/161 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT +DY +R LMY A+ D I+ IA + IS L KI+ L + G +E++R Sbjct: 1 MRLTNYSDYALRTLMYLAVIPDRNTLATITDIANSYQISRSHLTKIIHQLAQIGYIESIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------------CP 100 G+ GG+RL + A I + +V++ TE F V CF + D C Sbjct: 61 GKNGGIRLAKAAQDINLGEVIRQTEPDFHVVPCFPAPGCDAQSRSNSKSKAQPKPADYCA 120 Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 + C L SV +A AF V+ Y++ +V N ++ +I Sbjct: 121 ITPVCKLKSVFAEATGAFLKVMDNYTLADIVANEEALWQIL 161 >gi|319407107|emb|CBI80744.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 151 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 100/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCASNQEALSRIPEIASTYAVSELFLFKILQPLVEAGFIKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + +CPL+ CGL VL+KAL++FFD Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSLTSIADL 130 >gi|254467326|ref|ZP_05080737.1| Rrf2 family protein [Rhodobacterales bacterium Y4I] gi|206688234|gb|EDZ48716.1| Rrf2 family protein [Rhodobacterales bacterium Y4I] Length = 149 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 80/142 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA H D ++IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAAHEDRLVTKAEIAECCNISENHLAQVINQLSQLGYLTTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I DV + E + + ECFA CPL G+C L L A AF+ Sbjct: 61 NGGMNLGRPAAEIRIGDVFRDVEGNLPMVECFADADNTCPLAGACRLKVALADAAQAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L S+E LV + + +I Sbjct: 121 SLDDISLEALVCDNHDLLRILQ 142 >gi|126650509|ref|ZP_01722732.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905] gi|126592665|gb|EAZ86664.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905] Length = 145 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + + I +I++A IS+ L K+ L G +ET+RG Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+ Sbjct: 61 RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y+++ + ++ + + Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142 >gi|332160028|ref|YP_004296605.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664258|gb|ADZ40902.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862089|emb|CBX72255.1| HTH-type transcriptional repressor nsrR [Yersinia enterocolitica W22703] Length = 141 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138 >gi|238764698|ref|ZP_04625642.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC 33638] gi|238697094|gb|EEP89867.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC 33638] Length = 141 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138 >gi|238797601|ref|ZP_04641098.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC 43969] gi|238718598|gb|EEQ10417.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC 43969] Length = 141 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+QI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPAEQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138 >gi|238795296|ref|ZP_04638875.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC 29909] gi|238725381|gb|EEQ16956.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC 29909] Length = 141 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+QI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPANQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ S + K+ Sbjct: 117 NELDNYTLADMVKDNSPLYKLL 138 >gi|121999179|ref|YP_001003966.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121590584|gb|ABM63164.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 152 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 83/142 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +RVL++ I IAE IS L K++ L G VETVRG+ Sbjct: 1 MRLTRHSDYALRVLLFLGAAQGELVTIGAIAERFEISRNHLMKVVNRLAAHGFVETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL +P + I + ++++ TEE F + ECF C + G+C + +VL +AL+AF Sbjct: 61 RGGIRLAQPPETIPLGELLRRTEEDFTLVECFREEDQRCRIEGTCAVRAVLDEALHAFLA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ L+ NR ++ N Sbjct: 121 VLDRYTLADLLHNRGALAVDLN 142 >gi|238787545|ref|ZP_04631343.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii ATCC 33641] gi|238724332|gb|EEQ15974.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii ATCC 33641] Length = 141 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138 >gi|89895173|ref|YP_518660.1| hypothetical protein DSY2427 [Desulfitobacterium hafniense Y51] gi|219669600|ref|YP_002460035.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|89334621|dbj|BAE84216.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539860|gb|ACL21599.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 146 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 2/146 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ ++ A++ + P + IA+ +SE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLTAMVDLALNSGEGPISLKSIADRQGLSEHYLEQLISGLRKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L + A++I I D+++ E EC A+ + C C S+ K + Sbjct: 61 AQGGYVLGKKAEKIRIGDIIRVLEGPIAPVECEANGDPECCQKSDYCVTRSIREKVRDPI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144 DVL S+ LVR+ ++ I + G Sbjct: 121 EDVLDSISLADLVRDPQTMCTIADPG 146 >gi|237703845|ref|ZP_04534326.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 3_2_53FAA] gi|332280962|ref|ZP_08393375.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp. D9] gi|226901757|gb|EEH88016.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 3_2_53FAA] gi|332103314|gb|EGJ06660.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp. D9] Length = 161 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG+ Sbjct: 22 QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGK 81 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 82 NGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 137 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 138 ELDNYTLADLVEENQPLYKLL 158 >gi|322831162|ref|YP_004211189.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602] gi|321166363|gb|ADW72062.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602] Length = 141 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + +D ISQ+ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDDQMTNISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG++L +PA+ I I DVV+ E + C + C + +C L VL A+ F Sbjct: 61 KNGGIKLGKPAETIRIGDVVRELE-PLSLVNCASDF---CHITPACRLKQVLHTAVEHFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D L QY++ +V++ S++ K+ Sbjct: 117 DELNQYTLADMVKDNSTLYKLL 138 >gi|119899391|ref|YP_934604.1| AAU3 protein [Azoarcus sp. BH72] gi|119671804|emb|CAL95718.1| AAU3 protein precursor [Azoarcus sp. BH72] Length = 153 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +DY +RVLMY H D + +++IA A ISE L K++ L ++G V+T+RG+ Sbjct: 1 MRLSTFSDYCLRVLMYLGEHADRLSTVAEIARAHDISESHLTKVVHQLGRSGYVDTLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R +I + +V++ TE F + ECF C + G+C L +VL +AL A F Sbjct: 61 GGGMRLARAPREIVLGEVLRQTETDFALVECFGDE-PHCYMEGACQLQAVLGEALGAMFR 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL Y++ L++ ++ Sbjct: 120 VLDGYTLADLLQRPDGSTRVL 140 >gi|238786347|ref|ZP_04630282.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC 43970] gi|238712746|gb|EEQ04823.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC 43970] Length = 141 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + I+Q+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTNITQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+QI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPAEQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L Y++ +V++ + + K+ Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138 >gi|238750077|ref|ZP_04611580.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC 43380] gi|238711621|gb|EEQ03836.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC 43380] Length = 141 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA++I I DVV+ E + C + C + +C L S L +A+ +F Sbjct: 61 KNGGIRLGKPANEIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKSALNQAVKSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D L Y++ +V++ + + K+ Sbjct: 117 DELDNYTLADMVQDNTPLYKLL 138 >gi|194445441|ref|YP_002043622.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873714|ref|ZP_02698652.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265870|ref|ZP_03165944.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243076|ref|YP_002218251.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205358148|ref|ZP_02576074.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205360093|ref|ZP_02834507.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224586207|ref|YP_002640006.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62130446|gb|AAX68149.1| putative negative regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404104|gb|ACF64326.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632977|gb|EDX51431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244125|gb|EDY26745.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937592|gb|ACH74925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327229|gb|EDZ13993.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341100|gb|EDZ27864.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470735|gb|ACN48565.1| putative negative regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312915465|dbj|BAJ39439.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222667|gb|EFX47739.1| Nitrite-sensitive transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322717315|gb|EFZ08886.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132705|gb|ADX20135.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 162 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG+ Sbjct: 23 QLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGK 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 83 NGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLK 138 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 139 ELDNYTLADLVEENQPLYKLL 159 >gi|253689808|ref|YP_003018998.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259514610|sp|C6DE26|NSRR_PECCP RecName: Full=HTH-type transcriptional repressor nsrR gi|251756386|gb|ACT14462.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 141 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 QELDQYTLADMVKENPPLYKLL 138 >gi|319898771|ref|YP_004158864.1| hypothetical protein BARCL_0601 [Bartonella clarridgeiae 73] gi|319402735|emb|CBI76282.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 159 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 74/130 (56%), Positives = 102/130 (78%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPLV+AG ++TVRGR Sbjct: 9 MRLTKQTNYALRMLMYCASNQGALSRIPEIAKAHAVSELFLFKILQPLVEAGFMQTVRGR 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + DCPL+ CGL +VL+KAL++FFD Sbjct: 69 NGGVKLAKPAKEISVADVIKITEDNFSMAECFDNKLSDCPLINFCGLNTVLKKALDSFFD 128 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 129 VLSMTSIADL 138 >gi|297616499|ref|YP_003701658.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] gi|297144336|gb|ADI01093.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] Length = 144 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A+H N+ P + +AE +SE +L +++ PL KAG+V++VRG Sbjct: 1 MKVSTKGRYGLRAMLDMALHQNEGPMAVHIVAERQGLSERYLEQLMVPLKKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + IT+ ++++A E +C + +C C + K ++ Sbjct: 61 PQGGYVLTKKPRDITVGEIIRALEGPIAPVDCVSEQTPEECERAEFCVTRLIWSKMRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 +VL S+E L++ I Sbjct: 121 AEVLDSLSLEDLIQESRKI 139 >gi|158320700|ref|YP_001513207.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140899|gb|ABW19211.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus oremlandii OhILAs] Length = 179 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H D P + +AE IS+ +L +++ L KAG+V++VRG Sbjct: 29 MRLSTKGRYGLKAMFDLALHYGDGPISLKSVAERQSISDHYLEQLIAGLRKAGLVKSVRG 88 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L +IT+ D+++ E ++C C C +V K + Sbjct: 89 AQGGYMLAENPSKITVGDIIRVLEGPLGPSDCVLEDEPTTCNNAECCVTRTVWEKIRVSI 148 Query: 119 FDVLTQYSIECLVRNRSSIK 138 +V+ +++ ++ + I Sbjct: 149 SEVIDSITLQNMLDDYEKIN 168 >gi|319404095|emb|CBI77683.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 151 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 100/130 (76%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + + +RI +IA +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCASNQEALSRIPEIANTYAVSELFLFKILQPLVEAGFMKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F +AECF + +CPL+ CGL VL+KAL++FFD Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSLTSIADL 130 >gi|90419071|ref|ZP_01226982.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337151|gb|EAS50856.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 160 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 78/142 (54%), Positives = 103/142 (72%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMYCA + +RI IA A SELFLFKILQPLV+AG+VETVRGR Sbjct: 7 MRLTRQTNYAIRILMYCASNGGQLSRIKDIAAAYSASELFLFKILQPLVEAGMVETVRGR 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPA I + +VV+ TEE+F +AECF + +DCPL+ SC L S LR+ALNAF Sbjct: 67 NGGVRLARPAAAINLRNVVEVTEENFALAECFETGAVDCPLIESCELNSALREALNAFLG 126 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L Y+I+ L+ N++ +++ Sbjct: 127 ALGNYTIDDLLGNKAFMRRRLG 148 >gi|16767613|ref|NP_463228.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56416158|ref|YP_153233.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161617637|ref|YP_001591602.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139505|ref|YP_219230.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167553785|ref|ZP_02347531.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168231405|ref|ZP_02656463.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239662|ref|ZP_02664720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245155|ref|ZP_02670087.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263280|ref|ZP_02685253.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449946|ref|YP_002048410.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470152|ref|ZP_03076136.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735133|ref|YP_002117308.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247528|ref|YP_002149281.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197365083|ref|YP_002144720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387819|ref|ZP_03214431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927167|ref|ZP_03218369.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205355124|ref|YP_002228925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859512|ref|YP_002246163.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238910525|ref|ZP_04654362.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81361477|sp|Q5PL57|NSRR_SALPA RecName: Full=HTH-type transcriptional repressor nsrR gi|81520811|sp|Q8ZKA3|NSRR_SALTY RecName: Full=HTH-type transcriptional repressor nsrR gi|119372261|sp|Q57GL3|NSRR_SALCH RecName: Full=HTH-type transcriptional repressor nsrR gi|189030888|sp|A9N4Z2|NSRR_SALPB RecName: Full=HTH-type transcriptional repressor nsrR gi|226737674|sp|B5F393|NSRR_SALA4 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737675|sp|B5R0P4|NSRR_SALEP RecName: Full=HTH-type transcriptional repressor nsrR gi|226737676|sp|B5R9C4|NSRR_SALG2 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737677|sp|B4TFB2|NSRR_SALHS RecName: Full=HTH-type transcriptional repressor nsrR gi|226737678|sp|B5BKI6|NSRR_SALPK RecName: Full=HTH-type transcriptional repressor nsrR gi|226737679|sp|B4TSF8|NSRR_SALSV RecName: Full=HTH-type transcriptional repressor nsrR gi|16422928|gb|AAL23187.1| putative negative regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130415|gb|AAV79921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161367001|gb|ABX70769.1| hypothetical protein SPAB_05500 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408250|gb|ACF68469.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456516|gb|EDX45355.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710635|gb|ACF89856.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096560|emb|CAR62170.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211231|gb|ACH48628.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197287648|gb|EDY27039.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604917|gb|EDZ03462.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323832|gb|EDZ09027.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274905|emb|CAR39972.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321871|gb|EDZ09710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334382|gb|EDZ21146.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336063|gb|EDZ22827.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348036|gb|EDZ34667.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711315|emb|CAR35693.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249457|emb|CBG27322.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996699|gb|ACY91584.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160855|emb|CBW20386.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320088794|emb|CBY98552.1| HTH-type transcriptional repressor nsrR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322615529|gb|EFY12449.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618589|gb|EFY15478.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621998|gb|EFY18848.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627722|gb|EFY24513.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631029|gb|EFY27793.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637752|gb|EFY34453.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642416|gb|EFY39020.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644015|gb|EFY40563.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650483|gb|EFY46891.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653553|gb|EFY49881.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659738|gb|EFY55981.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662051|gb|EFY58267.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666200|gb|EFY62378.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672620|gb|EFY68731.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676050|gb|EFY72121.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680534|gb|EFY76572.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684572|gb|EFY80576.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192887|gb|EFZ78113.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197237|gb|EFZ82377.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201646|gb|EFZ86710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206160|gb|EFZ91122.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213168|gb|EFZ97970.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215542|gb|EGA00286.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323227830|gb|EGA11984.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229000|gb|EGA13129.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236388|gb|EGA20464.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238707|gb|EGA22759.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241842|gb|EGA25871.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248009|gb|EGA31946.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254660|gb|EGA38471.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258281|gb|EGA41958.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263573|gb|EGA47094.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265831|gb|EGA49327.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270275|gb|EGA53723.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326630282|gb|EGE36625.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991178|gb|AEF10161.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 141 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138 >gi|220931730|ref|YP_002508638.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii H 168] gi|219993040|gb|ACL69643.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii H 168] Length = 151 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 2/146 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YG+R ++ AIH D + +IAE ISE +L ++ L KAG+V++VRG Sbjct: 1 MKISTRGRYGLRAMVDLAIHQDSGAIPLREIAERQQISEQYLEQLFANLRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L R AD+IT DV++ E +C + D C L+ C + K Sbjct: 61 AHGGYLLNRDADEITAGDVLRTLEGPIAPTDCVLDNDEDVCSLIDKCVTHELWVKLQKQV 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144 ++L ++ L + + N G Sbjct: 121 SEILDSVTLRDLQERAKELIRNKNKG 146 >gi|237729111|ref|ZP_04559592.1| transcriptional repressor NsrR [Citrobacter sp. 30_2] gi|226908840|gb|EEH94758.1| transcriptional repressor NsrR [Citrobacter sp. 30_2] Length = 141 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPAKDIGIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEKNQPLYKLL 138 >gi|51594783|ref|YP_068974.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis IP 32953] gi|150260577|ref|ZP_01917305.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125] gi|153947883|ref|YP_001402601.1| NsrR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|161484881|ref|NP_667973.2| transcriptional repressor NsrR [Yersinia pestis KIM 10] gi|161511445|ref|NP_991928.2| transcriptional repressor NsrR [Yersinia pestis biovar Microtus str. 91001] gi|162100152|ref|YP_653811.2| transcriptional repressor NsrR [Yersinia pestis Antiqua] gi|162139427|ref|YP_649219.2| transcriptional repressor NsrR [Yersinia pestis Nepal516] gi|167470114|ref|ZP_02334818.1| nitrite-sensitive repressor NsrR [Yersinia pestis FV-1] gi|218927582|ref|YP_002345457.1| transcriptional repressor NsrR [Yersinia pestis CO92] gi|229836639|ref|ZP_04456805.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A] gi|229840251|ref|ZP_04460410.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842329|ref|ZP_04462484.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903932|ref|ZP_04519045.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516] gi|270489081|ref|ZP_06206155.1| Rrf2 family protein [Yersinia pestis KIM D27] gi|81640568|sp|Q66FA9|NSRR_YERPS RecName: Full=HTH-type transcriptional repressor nsrR gi|119372265|sp|Q1C106|NSRR_YERPA RecName: Full=HTH-type transcriptional repressor nsrR gi|119372266|sp|Q0WJT1|NSRR_YERPE RecName: Full=HTH-type transcriptional repressor nsrR gi|119372267|sp|Q1CEG1|NSRR_YERPN RecName: Full=HTH-type transcriptional repressor nsrR gi|189030892|sp|A7FMX3|NSRR_YERP3 RecName: Full=HTH-type transcriptional repressor nsrR gi|51588065|emb|CAH19671.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|115346193|emb|CAL19061.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149289985|gb|EDM40062.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125] gi|152959378|gb|ABS46839.1| nitrite-sensitive repressor NsrR [Yersinia pseudotuberculosis IP 31758] gi|229679702|gb|EEO75805.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516] gi|229690639|gb|EEO82693.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696617|gb|EEO86664.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706323|gb|EEO92331.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A] gi|270337585|gb|EFA48362.1| Rrf2 family protein [Yersinia pestis KIM D27] gi|320013755|gb|ADV97326.1| DNA-binding transcriptional regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 141 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 61 KNGGIRLGKPADQILIGDVVRQME-PLTLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ S + K+ Sbjct: 117 KELDNYTLADMVKDNSPLYKLL 138 >gi|259416348|ref|ZP_05740268.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B] gi|259347787|gb|EEW59564.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B] Length = 155 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 81/141 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA++ S+IA+ C ISE L +++ L + G ++T RGR Sbjct: 1 MRITKRTNIAVRLLMYCALNEGRLVTKSEIAQRCNISENHLAQVVNQLSQLGFLKTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R AD+I I DV + E + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGLNLSRSADEICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALSRAGEAFYS 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++E L + +++I Sbjct: 121 ALDGVTLESLTCDNFDLQRIL 141 >gi|253580123|ref|ZP_04857390.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848642|gb|EES76605.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 144 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+HN +I I+ ISE +L +I+ L KAG V+++RG Sbjct: 1 MQISTKGRYALRLMLDLAVHNTGELVKIKDISARENISEKYLEQIISSLKKAGYVKSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + T+ +++ TE S C C G C + + A Sbjct: 61 AQGGYMLAREPETYTVGTILRLTEGSMKPVACLEDEPNQCSRAGECVTLRLWKMLDEAIE 120 Query: 120 DVLTQYSIECL 130 VL + +++ L Sbjct: 121 GVLDKVTLQDL 131 >gi|227112379|ref|ZP_03826035.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227325972|ref|ZP_03829996.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 141 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138 >gi|210622565|ref|ZP_03293247.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275] gi|210154148|gb|EEA85154.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275] Length = 155 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A++ + P I I+E +SE +L +I L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLKAMFELALNYGEEPISIKYISEKQNVSERYLEQIFSKLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R D+I++ D++ E +++C + C C V +K NA Sbjct: 61 SQGGYFLARKPDEISVGDILTVLEGPITISDCLKEEGV-CSNSDKCATRLVWKKMKNAID 119 Query: 120 DVLTQYSIECLVRNR 134 DV+ ++ +V +R Sbjct: 120 DVVNTTFLQDMVDDR 134 >gi|120555981|ref|YP_960332.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325830|gb|ABM20145.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei VT8] Length = 145 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A D I +IA++ IS+ L K++ L K G +ET+RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAAEGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL I I +V+ TE+ + ECF+S K C + CGL S+ +AL AF + Sbjct: 61 KGGMRLHMAPQDINIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119 Query: 121 VLTQYSIECLVRN--RSSIKKIFN 142 VL +Y++ ++++ R + ++ Sbjct: 120 VLDRYTLADVIQDHHRPQLLRLLQ 143 >gi|258515490|ref|YP_003191712.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] gi|257779195|gb|ACV63089.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] Length = 142 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ + + A+H P + +AE +SE +L +++ L K+G+V++VRG Sbjct: 1 MRMSTKGHYGLKAMFFLALHYGPDPIPLKNVAERQGLSENYLEQLIATLRKSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R +I + D+++ E EC + C C +V K ++ Sbjct: 61 AQGGYILARDPSEIKVGDIIRVLEGPIAPLECVSEGVPSVCDQFDFCITRTVWEKVRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 DVL S+ + ++ +K Sbjct: 121 ADVLDSISLADMCQDAEKARK 141 >gi|302389692|ref|YP_003825513.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] gi|302200320|gb|ADL07890.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] Length = 150 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + AI+ + P + IA+ ISE +L +++ L KAG+V++VRG Sbjct: 1 MKLSTKGRYGLKAMFDLAINYGEGPIPLKSIADRQNISEHYLEQLIMILRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L + +IT+ DV++ E + +C ++C +C + V K ++ Sbjct: 61 AQGGYMLAKKPAEITVGDVLRVLEGPIGLVDCVLEQDPLECDKAENCIMRIVWEKIRDSM 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + +++ + K Sbjct: 121 IAAMDSITLQDMCNEAEKRK 140 >gi|261822840|ref|YP_003260946.1| transcriptional repressor NsrR [Pectobacterium wasabiae WPP163] gi|261606853|gb|ACX89339.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium wasabiae WPP163] Length = 141 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138 >gi|302391513|ref|YP_003827333.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203590|gb|ADL12268.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium arabaticum DSM 5501] Length = 153 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG+R ++ A+H D ++ IAE ISE +L +++ L KAG+V +VR Sbjct: 1 MKLSTKGRYGVRAMVDLALHYDDQGATPLNSIAERQNISEHYLEQLIATLRKAGLVNSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNA 117 G GG L R +IT+ D+++ E +EC A + C + SC + +K N+ Sbjct: 61 GAYGGYLLARKPAEITVKDIIQELEGPIAPSECVAKESESSCENIESCITRLIWKKLRNS 120 Query: 118 FFDVLTQYSIECL 130 +VL ++E L Sbjct: 121 INEVLNSITLEDL 133 >gi|16763186|ref|NP_458803.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144665|ref|NP_808007.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052276|ref|ZP_03345154.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418156|ref|ZP_03351222.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428666|ref|ZP_03361416.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582913|ref|ZP_03364739.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648975|ref|ZP_03379028.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852964|ref|ZP_03382496.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811153|ref|ZP_06541782.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829975|ref|ZP_06547426.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81512227|sp|Q8Z183|NSRR_SALTI RecName: Full=HTH-type transcriptional repressor nsrR gi|25303603|pir||AG1049 conserved hypothetical protein yjeB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505494|emb|CAD06844.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29140304|gb|AAO71867.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 141 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138 >gi|58039326|ref|YP_191290.1| CDG1D protein [Gluconobacter oxydans 621H] gi|58001740|gb|AAW60634.1| CDG1D protein [Gluconobacter oxydans 621H] Length = 149 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ +H + I +IA+A ISE L K++ L + G V TVRGR Sbjct: 1 MRLTLHTDYALRVLIHLGVHTSHRVSIREIAQAYRISENHLVKVVHRLGQGGFVTTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+ L RPA +I + VV+ TE+ + +C + D C L +C L VL AL A Sbjct: 61 GGGLELARPASEINVGAVVRFTEDDMTLVDCEGRNSTDGTPCVLSPACVLRGVLGDALGA 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 F VL +Y++ L+ R + Sbjct: 121 FLTVLDRYTLADLLTGREA 139 >gi|15804767|ref|NP_290808.1| transcriptional repressor NsrR [Escherichia coli O157:H7 EDL933] gi|15834408|ref|NP_313181.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. Sakai] gi|16132000|ref|NP_418599.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli str. K-12 substr. MG1655] gi|24115533|ref|NP_710043.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 301] gi|26251070|ref|NP_757110.1| transcriptional repressor NsrR [Escherichia coli CFT073] gi|30065550|ref|NP_839721.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 2457T] gi|74314663|ref|YP_313082.1| transcriptional repressor NsrR [Shigella sonnei Ss046] gi|82546581|ref|YP_410528.1| transcriptional repressor NsrR [Shigella boydii Sb227] gi|82779440|ref|YP_405789.1| transcriptional repressor NsrR [Shigella dysenteriae Sd197] gi|89110898|ref|AP_004678.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|91213727|ref|YP_543713.1| transcriptional repressor NsrR [Escherichia coli UTI89] gi|110644535|ref|YP_672265.1| transcriptional repressor NsrR [Escherichia coli 536] gi|110808096|ref|YP_691616.1| transcriptional repressor NsrR [Shigella flexneri 5 str. 8401] gi|117626524|ref|YP_859847.1| transcriptional repressor NsrR [Escherichia coli APEC O1] gi|168760419|ref|ZP_02785426.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4501] gi|168784814|ref|ZP_02809821.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC869] gi|168801832|ref|ZP_02826839.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC508] gi|170083624|ref|YP_001732944.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170680746|ref|YP_001746573.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5] gi|191165643|ref|ZP_03027483.1| transcriptional repressor NsrR [Escherichia coli B7A] gi|191170792|ref|ZP_03032344.1| transcriptional repressor NsrR [Escherichia coli F11] gi|191174524|ref|ZP_03036022.1| transcriptional repressor NsrR [Escherichia coli F11] gi|193066007|ref|ZP_03047065.1| transcriptional repressor NsrR [Escherichia coli E22] gi|193070883|ref|ZP_03051815.1| transcriptional repressor NsrR [Escherichia coli E110019] gi|194426693|ref|ZP_03059247.1| transcriptional repressor NsrR [Escherichia coli B171] gi|194434604|ref|ZP_03066861.1| transcriptional repressor NsrR [Shigella dysenteriae 1012] gi|215489522|ref|YP_002331953.1| transcriptional repressor NsrR [Escherichia coli O127:H6 str. E2348/69] gi|217325196|ref|ZP_03441280.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. TW14588] gi|218561337|ref|YP_002394250.1| transcriptional repressor NsrR [Escherichia coli S88] gi|218692512|ref|YP_002400724.1| transcriptional repressor NsrR [Escherichia coli ED1a] gi|218697927|ref|YP_002405594.1| transcriptional repressor NsrR [Escherichia coli 55989] gi|218702875|ref|YP_002410504.1| transcriptional repressor NsrR [Escherichia coli IAI39] gi|218707789|ref|YP_002415308.1| transcriptional repressor NsrR [Escherichia coli UMN026] gi|227886779|ref|ZP_04004584.1| transcriptional repressor NsrR [Escherichia coli 83972] gi|238903285|ref|YP_002929081.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|256019823|ref|ZP_05433688.1| transcriptional repressor NsrR [Shigella sp. D9] gi|256025113|ref|ZP_05438978.1| transcriptional repressor NsrR [Escherichia sp. 4_1_40B] gi|260847008|ref|YP_003224786.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|260858331|ref|YP_003232222.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|260870914|ref|YP_003237316.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|261225298|ref|ZP_05939579.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. FRIK2000] gi|261255450|ref|ZP_05947983.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. FRIK966] gi|291285590|ref|YP_003502408.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. CB9615] gi|293402805|ref|ZP_06646902.1| transcriptional repressor NsrR [Escherichia coli FVEC1412] gi|293407905|ref|ZP_06651745.1| transcriptional repressor NsrR [Escherichia coli B354] gi|293417681|ref|ZP_06660303.1| transcriptional repressor NsrR [Escherichia coli B185] gi|293476489|ref|ZP_06664897.1| transcriptional repressor NsrR [Escherichia coli B088] gi|298378335|ref|ZP_06988219.1| transcriptional repressor NsrR [Escherichia coli FVEC1302] gi|301028000|ref|ZP_07191284.1| Rrf2 family protein [Escherichia coli MS 196-1] gi|306815607|ref|ZP_07449756.1| transcriptional repressor NsrR [Escherichia coli NC101] gi|307140872|ref|ZP_07500228.1| transcriptional repressor NsrR [Escherichia coli H736] gi|309787682|ref|ZP_07682293.1| rrf2 family protein [Shigella dysenteriae 1617] gi|312974014|ref|ZP_07788185.1| rrf2 family protein [Escherichia coli 1827-70] gi|331644925|ref|ZP_08346042.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736] gi|331650303|ref|ZP_08351375.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605] gi|331656006|ref|ZP_08356994.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718] gi|331660753|ref|ZP_08361685.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206] gi|331665842|ref|ZP_08366736.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143] gi|331671083|ref|ZP_08371916.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271] gi|331671327|ref|ZP_08372125.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280] gi|331680308|ref|ZP_08380967.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591] gi|331681197|ref|ZP_08381834.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299] gi|84028053|sp|P0AF65|NSRR_ECO57 RecName: Full=HTH-type transcriptional repressor nsrR gi|84028054|sp|P0AF64|NSRR_ECOL6 RecName: Full=HTH-type transcriptional repressor nsrR gi|84028055|sp|P0AF63|NSRR_ECOLI RecName: Full=HTH-type transcriptional repressor nsrR gi|84028056|sp|P0AF66|NSRR_SHIFL RecName: Full=HTH-type transcriptional repressor nsrR gi|119372258|sp|Q0T9L5|NSRR_ECOL5 RecName: Full=HTH-type transcriptional repressor nsrR gi|119372259|sp|Q1R382|NSRR_ECOUT RecName: Full=HTH-type transcriptional repressor nsrR gi|119372262|sp|Q31TA8|NSRR_SHIBS RecName: Full=HTH-type transcriptional repressor nsrR gi|119372263|sp|Q328F7|NSRR_SHIDS RecName: Full=HTH-type transcriptional repressor nsrR gi|119372264|sp|Q3YUG5|NSRR_SHISS RecName: Full=HTH-type transcriptional repressor nsrR gi|122956960|sp|Q0SXA4|NSRR_SHIF8 RecName: Full=HTH-type transcriptional repressor nsrR gi|189030884|sp|A1AJ83|NSRR_ECOK1 RecName: Full=HTH-type transcriptional repressor nsrR gi|226736213|sp|B7MLI3|NSRR_ECO45 RecName: Full=HTH-type transcriptional repressor nsrR gi|226736215|sp|B7NTN4|NSRR_ECO7I RecName: Full=HTH-type transcriptional repressor nsrR gi|226736775|sp|B1XDS9|NSRR_ECODH RecName: Full=HTH-type transcriptional repressor nsrR gi|226737668|sp|B7NGB2|NSRR_ECOLU RecName: Full=HTH-type transcriptional repressor nsrR gi|226737670|sp|B1LQJ8|NSRR_ECOSM RecName: Full=HTH-type transcriptional repressor nsrR gi|254768044|sp|B7UQI7|NSRR_ECO27 RecName: Full=HTH-type transcriptional repressor nsrR gi|254768045|sp|B7LC37|NSRR_ECO55 RecName: Full=HTH-type transcriptional repressor nsrR gi|254768046|sp|B7MSJ6|NSRR_ECO81 RecName: Full=HTH-type transcriptional repressor nsrR gi|259514607|sp|C4ZR55|NSRR_ECOBW RecName: Full=HTH-type transcriptional repressor nsrR gi|12519166|gb|AAG59374.1|AE005651_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26111502|gb|AAN83684.1|AE016771_195 Hypothetical protein yjeB [Escherichia coli CFT073] gi|537019|gb|AAA97074.1| yjeB [Escherichia coli str. K-12 substr. MG1655] gi|912442|dbj|BAA01776.1| ORF-1 [Shigella flexneri] gi|1790621|gb|AAC77135.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli str. K-12 substr. MG1655] gi|13364631|dbj|BAB38577.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24054861|gb|AAN45750.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043814|gb|AAP19533.1| hypothetical protein S4601 [Shigella flexneri 2a str. 2457T] gi|73858140|gb|AAZ90847.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81243588|gb|ABB64298.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81247992|gb|ABB68700.1| conserved hypothetical protein [Shigella boydii Sb227] gi|85676929|dbj|BAE78179.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|91075301|gb|ABE10182.1| hypothetical protein UTI89_C4778 [Escherichia coli UTI89] gi|110346127|gb|ABG72364.1| putative transcriptional regulator YjeB [Escherichia coli 536] gi|110617644|gb|ABF06311.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115515648|gb|ABJ03723.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|169891459|gb|ACB05166.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170518464|gb|ACB16642.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5] gi|189368884|gb|EDU87300.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4501] gi|189374986|gb|EDU93402.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC869] gi|189376056|gb|EDU94472.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC508] gi|190904338|gb|EDV64047.1| transcriptional repressor NsrR [Escherichia coli B7A] gi|190905204|gb|EDV64845.1| transcriptional repressor NsrR [Escherichia coli F11] gi|190909016|gb|EDV68603.1| transcriptional repressor NsrR [Escherichia coli F11] gi|192926330|gb|EDV80966.1| transcriptional repressor NsrR [Escherichia coli E22] gi|192955829|gb|EDV86300.1| transcriptional repressor NsrR [Escherichia coli E110019] gi|194415432|gb|EDX31700.1| transcriptional repressor NsrR [Escherichia coli B171] gi|194417189|gb|EDX33301.1| transcriptional repressor NsrR [Shigella dysenteriae 1012] gi|209750218|gb|ACI73416.1| hypothetical protein ECs5154 [Escherichia coli] gi|209750220|gb|ACI73417.1| hypothetical protein ECs5154 [Escherichia coli] gi|209750222|gb|ACI73418.1| hypothetical protein ECs5154 [Escherichia coli] gi|209750224|gb|ACI73419.1| hypothetical protein ECs5154 [Escherichia coli] gi|215267594|emb|CAS12049.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|217321417|gb|EEC29841.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. TW14588] gi|218354659|emb|CAV01655.1| DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218368106|emb|CAR05913.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|218372861|emb|CAR20741.1| DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218430076|emb|CAR10921.1| DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218434886|emb|CAR15824.1| DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|222035948|emb|CAP78693.1| HTH-type transcriptional repressor nsrR [Escherichia coli LF82] gi|227836352|gb|EEJ46818.1| transcriptional repressor NsrR [Escherichia coli 83972] gi|238862328|gb|ACR64326.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|257756980|dbj|BAI28482.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257762155|dbj|BAI33652.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257767270|dbj|BAI38765.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|260450995|gb|ACX41417.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1] gi|281181274|dbj|BAI57604.1| conserved hypothetical protein [Escherichia coli SE15] gi|281603640|gb|ADA76624.1| HTH-type transcriptional repressor nsrR [Shigella flexneri 2002017] gi|284924360|emb|CBG37476.1| transcriptional repressor [Escherichia coli 042] gi|290765463|gb|ADD59424.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. CB9615] gi|291320942|gb|EFE60384.1| transcriptional repressor NsrR [Escherichia coli B088] gi|291429720|gb|EFF02734.1| transcriptional repressor NsrR [Escherichia coli FVEC1412] gi|291430399|gb|EFF03397.1| transcriptional repressor NsrR [Escherichia coli B185] gi|291472156|gb|EFF14638.1| transcriptional repressor NsrR [Escherichia coli B354] gi|294490746|gb|ADE89502.1| transcriptional repressor NsrR [Escherichia coli IHE3034] gi|298280669|gb|EFI22170.1| transcriptional repressor NsrR [Escherichia coli FVEC1302] gi|299878910|gb|EFI87121.1| Rrf2 family protein [Escherichia coli MS 196-1] gi|305851269|gb|EFM51724.1| transcriptional repressor NsrR [Escherichia coli NC101] gi|307556345|gb|ADN49120.1| putative transcriptional regulator YjeB [Escherichia coli ABU 83972] gi|307629250|gb|ADN73554.1| transcriptional repressor NsrR [Escherichia coli UM146] gi|308924432|gb|EFP69928.1| rrf2 family protein [Shigella dysenteriae 1617] gi|310331548|gb|EFP98804.1| rrf2 family protein [Escherichia coli 1827-70] gi|312948827|gb|ADR29654.1| transcriptional repressor NsrR [Escherichia coli O83:H1 str. NRG 857C] gi|313646347|gb|EFS10809.1| rrf2 family protein [Shigella flexneri 2a str. 2457T] gi|315138732|dbj|BAJ45891.1| transcriptional repressor NsrR [Escherichia coli DH1] gi|315617591|gb|EFU98197.1| rrf2 family protein [Escherichia coli 3431] gi|320180691|gb|EFW55618.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella boydii ATCC 9905] gi|320187056|gb|EFW61767.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella flexneri CDC 796-83] gi|320190690|gb|EFW65340.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC1212] gi|320193558|gb|EFW68195.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli WV_060327] gi|320200692|gb|EFW75278.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli EC4100B] gi|320638936|gb|EFX08582.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. G5101] gi|320644305|gb|EFX13370.1| transcriptional repressor NsrR [Escherichia coli O157:H- str. 493-89] gi|320649623|gb|EFX18147.1| transcriptional repressor NsrR [Escherichia coli O157:H- str. H 2687] gi|320655019|gb|EFX22980.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660526|gb|EFX27987.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. USDA 5905] gi|320665795|gb|EFX32832.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. LSU-61] gi|323156005|gb|EFZ42167.1| rrf2 family protein [Escherichia coli EPECa14] gi|323161967|gb|EFZ47839.1| rrf2 family protein family protein [Escherichia coli E128010] gi|323166661|gb|EFZ52419.1| rrf2 family protein [Shigella sonnei 53G] gi|323176063|gb|EFZ61655.1| rrf2 family protein family protein [Escherichia coli 1180] gi|323189943|gb|EFZ75221.1| rrf2 family protein family protein [Escherichia coli RN587/1] gi|323935408|gb|EGB31752.1| transcriptional regulator [Escherichia coli E1520] gi|323940097|gb|EGB36291.1| transcriptional regulator [Escherichia coli E482] gi|323950753|gb|EGB46631.1| transcriptional regulator [Escherichia coli H252] gi|323955465|gb|EGB51229.1| transcriptional regulator [Escherichia coli H263] gi|323965564|gb|EGB61018.1| transcriptional regulator [Escherichia coli M863] gi|323975481|gb|EGB70582.1| transcriptional regulator [Escherichia coli TW10509] gi|326345490|gb|EGD69233.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli O157:H7 str. 1125] gi|326346653|gb|EGD70387.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli O157:H7 str. 1044] gi|327250118|gb|EGE61837.1| rrf2 family protein family protein [Escherichia coli STEC_7v] gi|330908520|gb|EGH37039.1| nitrite-sensitive transcriptional repressor NsrR [Escherichia coli AA86] gi|331035900|gb|EGI08138.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736] gi|331040697|gb|EGI12855.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605] gi|331046360|gb|EGI18450.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718] gi|331051795|gb|EGI23834.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206] gi|331056893|gb|EGI28887.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143] gi|331061672|gb|EGI33598.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271] gi|331071172|gb|EGI42529.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280] gi|331071771|gb|EGI43107.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591] gi|331081418|gb|EGI52579.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299] gi|332083175|gb|EGI88406.1| rrf2 family protein family protein [Shigella boydii 5216-82] gi|332083816|gb|EGI89034.1| rrf2 family protein family protein [Shigella dysenteriae 155-74] gi|332087072|gb|EGI92206.1| rrf2 family protein family protein [Shigella boydii 3594-74] gi|332346255|gb|AEE59589.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749054|gb|EGJ79477.1| rrf2 family protein family protein [Shigella flexneri K-671] gi|332749323|gb|EGJ79744.1| rrf2 family protein family protein [Shigella flexneri 4343-70] gi|332761860|gb|EGJ92134.1| rrf2 family protein family protein [Shigella flexneri 2747-71] gi|332763226|gb|EGJ93469.1| nsrR [Shigella flexneri 2930-71] gi|333009143|gb|EGK28599.1| rrf2 family protein family protein [Shigella flexneri K-218] gi|333011981|gb|EGK31366.1| rrf2 family protein family protein [Shigella flexneri K-304] Length = 141 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|56477058|ref|YP_158647.1| transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56313101|emb|CAI07746.1| predicted transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 153 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 57/139 (41%), Positives = 80/139 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L++ +H + I QIA+ IS+ L KI+ L G+VET RGR Sbjct: 1 MKLTDYTDYTLRTLIFLGLHRNEQVTIQQIADGYDISKNHLMKIIHRLSLDGLVETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +P D+I I VV+A E+ F + ECF+ C L C L + R AL AFF Sbjct: 61 SGGVRLRKPPDEINIGQVVRAAEQEFALVECFSRVNNRCVLSPVCELQATFRDALEAFFA 120 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL + ++ ++RN ++ Sbjct: 121 VLDKRTLADILRNAEEVRP 139 >gi|187731546|ref|YP_001882869.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94] gi|226737680|sp|B2TY53|NSRR_SHIB3 RecName: Full=HTH-type transcriptional repressor nsrR gi|187428538|gb|ACD07812.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94] Length = 141 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTNFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|56695347|ref|YP_165695.1| rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56677084|gb|AAV93750.1| rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 148 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 80/142 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LM+CA H S+IAE C +SE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMFCAAHPGRLVTKSEIAEVCNVSENHLAQVINQLSQLGFLTTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L AD I I +V + E + + ECFA CPL +C L LR A AF+ Sbjct: 61 NGGMCLGMAADAIRIGEVFRHVEGNLPMVECFADADNSCPLTDACRLRLALRDAAQAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L + +++ LV + + + KI N Sbjct: 121 SLDEITLDALVCDNTDLLKILN 142 >gi|192359950|ref|YP_001982031.1| rrf2 family protein [Cellvibrio japonicus Ueda107] gi|190686115|gb|ACE83793.1| rrf2 family protein [Cellvibrio japonicus Ueda107] Length = 160 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +RVL+Y A+ + + I +IA++ IS+ L K++Q L G ++ VRG+ Sbjct: 16 MRITRYTDYSLRVLIYVALKGEAISTIREIADSYGISKNHLMKVVQELNNKGYLQAVRGK 75 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I I +V+ TEE F + ECF+ + C L +C L VL KAL AFF Sbjct: 76 HGGLRLNGRPEDINIGRLVRHTEEDFALVECFSGGE--CSLTPACRLKGVLVKALEAFFQ 133 Query: 121 VLTQYSIECL--VRNRSSIKKIFN 142 VL Y++ L + +R + ++ + Sbjct: 134 VLDGYTLADLLPLSSRRELVRLLS 157 >gi|327440415|dbj|BAK16780.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 153 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDY +R LMY + + I +IA+A IS+ L K+ L K G +ET+RGR Sbjct: 6 RLTVYTDYSLRTLMYLGVRGRENLVTIQEIADAYQISKNHLMKVTHDLGKIGYIETIRGR 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +QI I +VV+ TE+ F + ECF C + C L L++AL A+ Sbjct: 66 GGGIRLAVEPEQINIGEVVRKTEDDFHLVECFNPEGNLCKISPECRLKFALQEALKAYLA 125 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ ++ ++ + ++F Sbjct: 126 VLDTYTLADVLVSKDILSELFG 147 >gi|283852245|ref|ZP_06369517.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283572327|gb|EFC20315.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 146 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A+++ P RI IA +S +L K+++ L +AG V + RG Sbjct: 1 MKLTTRSRYGTRMILDMALNDQAGPVRIKDIAARQGVSVKYLEKLVRELKQAGFVRSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L RP ++I++ +V+A E F + EC CP C V +A A Sbjct: 61 PRGGHELARPLEEISVGAIVRALEGEFTLVECDGEAGTPCPRQADCLTREVWAEASRAMH 120 Query: 120 DVLTQYSIECLV 131 + L ++ LV Sbjct: 121 EKLDAITLADLV 132 >gi|51893529|ref|YP_076220.1| putative transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857218|dbj|BAD41376.1| putative transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 146 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ L A+H P + IAE +SE +L ++ PL +AGI+ VRG Sbjct: 1 MKLSTKGKYGVKALFELAMHEGSGPVSLRTIAERQGLSEHYLEQLAAPLRRAGIITAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RPA+QIT+ D+++ E +C + D +C + V + Sbjct: 61 AQGGYMLARPANQITVGDIIRVLEGPIGYTDCATEGEPDPECASTCPVHGVWERVTQQII 120 Query: 120 DVLTQYSIECLVRN 133 V+ +++ LV Sbjct: 121 AVIDSITLQDLVDQ 134 >gi|229541297|ref|ZP_04430357.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] gi|229325717|gb|EEN91392.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] Length = 144 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +DY +R L+Y A + I +IA+A IS+ L KI L + G+V+TVRG Sbjct: 1 MRLTHYSDYALRELIYLASLEEGKLASIKEIADAYNISKNHLMKITYELSQLGLVKTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + +I + +++ TE+ F + EC C + CGL VL +AL A+ Sbjct: 61 RGGGICLNKHPREINVGKLIRITEDDFKLVECMEDGASACIISPVCGLKHVLNEALVAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++E LV++ S +++ Sbjct: 121 RVLDKYTLEDLVKDPLSYRQLL 142 >gi|302879674|ref|YP_003848238.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302582463|gb|ADL56474.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 161 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 57/141 (40%), Positives = 87/141 (61%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +D G+R+LMY A+ I + ++ IS+ L KI L K G++ ++RGR Sbjct: 1 MKLTQYSDLGLRLLMYLALREGESVTIQEASDRFAISKNHLVKISHQLTKQGLIVSIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RP ++I + +V++ATEE+F + ECF + + C + G C L++VL AL AFF Sbjct: 61 NGGVRLARPPERINVEEVLRATEENFDLVECFNAAQNRCVISGECKLSAVLDAALAAFFK 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL+ S+ LV N +I + Sbjct: 121 VLSATSLADLVTNSQAIDQNL 141 >gi|329888279|ref|ZP_08266877.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] gi|328846835|gb|EGF96397.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] Length = 141 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y D I++IA+A IS+ L K++ LV AG + +VRGR Sbjct: 1 MRLTRYTDYAMRVLLYLGARQDRLCSIAEIAQAYGISQNHLMKVVSDLVNAGYLVSVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RP DQI + VV+ TE+ F + +C C + +CGLT L +AL AF Sbjct: 61 FGGVRLARPPDQINVGAVVRHTEDGFDLVDC-----GSCIIAPACGLTGALHQALAAFMK 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++E L+ R + +F Sbjct: 116 VLDGYTLEGLLSRRVDMAGLFE 137 >gi|78045031|ref|YP_361013.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997146|gb|ABB16045.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 148 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ + A+H + P IS+IA ISE +L ++ L KAG++++VRG Sbjct: 1 MRLSTRGHYGLKAIYDLALHYGEGPVPISEIARRQMISEPYLEQLFSVLRKAGLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L R ++IT+ +VV+ E EC + + K C +C V K +A Sbjct: 61 AQGGYLLNRLPEEITVGEVVRVLEGPIAPVECVSENVKEACDQADACISRVVWAKVRDAL 120 Query: 119 FDVLTQYSIECLVRNRSS 136 VL +++ ++ Sbjct: 121 NKVLDSITLKDMIEEAKK 138 >gi|126739737|ref|ZP_01755428.1| rrf2 family protein [Roseobacter sp. SK209-2-6] gi|126718969|gb|EBA15680.1| rrf2 family protein [Roseobacter sp. SK209-2-6] Length = 149 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 78/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LM+CA ++D S+IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMFCAANSDRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R +I + D+ + E + + ECFA CPL +C L L A AF+ Sbjct: 61 NGGMSLGRDPQEILMGDIFRHVEGNLPMVECFADADNSCPLTDACRLRVALSDAAQAFYS 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L +++ LV + + ++ Sbjct: 121 SLDDITLDSLVCDNHDLMRLLQ 142 >gi|331091033|ref|ZP_08339875.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405255|gb|EGG84791.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium 2_1_46FAA] Length = 152 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A +++ P I+ I+ ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEVEPVSINSISARQGISERYLEQLMALLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG L + + I++ DV++A E EC S + C G C V ++ + Sbjct: 61 AGGGYVLAKEKEDISVGDVLRALEGKLEPVECSGFSAEESCEAAGGCVTKYVWQRINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 + + + ++ LVR ++ I Sbjct: 121 NNTVDEIKLDQLVRESKAMNSI 142 >gi|146310026|ref|YP_001175100.1| transcriptional repressor NsrR [Enterobacter sp. 638] gi|189030886|sp|A4W5R9|NSRR_ENT38 RecName: Full=HTH-type transcriptional repressor nsrR gi|145316902|gb|ABP59049.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638] Length = 141 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + ISQ+ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I + DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPAQSIRVGDVVRELE-PLSLVNCSSDF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|170766851|ref|ZP_02901304.1| transcriptional repressor NsrR [Escherichia albertii TW07627] gi|170124289|gb|EDS93220.1| transcriptional repressor NsrR [Escherichia albertii TW07627] Length = 162 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG+ Sbjct: 23 QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYDVSRNHMVKIINQLSRAGYVTAVRGK 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 83 NGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 138 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 139 ELDNYTLADLVEENQPLYKLL 159 >gi|162146319|ref|YP_001600778.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209543678|ref|YP_002275907.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161784894|emb|CAP54437.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531355|gb|ACI51292.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 146 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y D I +IA+A ISE L KI+ L + G +ETVRGR Sbjct: 1 MRLTLHTDYALRTLIYLGTRTDRLVSIHEIAQAYGISENHLMKIIHRLGRGGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKA 114 GG+RL R AD I I DVV+ TEE + C C L +C L VL +A Sbjct: 61 GGGLRLARAADAIRIGDVVRYTEEDMALVGCMQGDDPSAPDARPCVLADACRLKGVLGEA 120 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 L AF VL +Y++ ++ R+ Sbjct: 121 LGAFTAVLDRYTLADMITERT 141 >gi|251788403|ref|YP_003003124.1| transcriptional repressor NsrR [Dickeya zeae Ech1591] gi|247537024|gb|ACT05645.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591] Length = 141 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E + C C + +C L VL++A+ F Sbjct: 61 KNGGIRLGRDPSTIRIGDVVRELE-PLSLVNCSKEF---CHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + K+ Sbjct: 117 TELDNYTLADMVEENPPLYKLL 138 >gi|311281270|ref|YP_003943501.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] gi|308750465|gb|ADO50217.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] Length = 141 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRVGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C + C + +C L L A+ +F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSNAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138 >gi|320173668|gb|EFW48858.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella dysenteriae CDC 74-1112] Length = 141 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELE-PLSLVSCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|333010327|gb|EGK29760.1| rrf2 family protein family protein [Shigella flexneri VA-6] Length = 141 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|300854396|ref|YP_003779380.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434511|gb|ADK14278.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 148 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH +D P+ I I+E ISE +L ++ L K+ +V+++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYSDEPSSIKSISERQNISEYYLEQLFSNLRKSNLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R IT+ D++K E +++C + + C + C + + + Sbjct: 61 AQGGYILNREPKDITVADIMKVLEGPIEISDCVDENNENSCSNMDCCATRLLWSRIKESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V+ +++ +V + +K+ Sbjct: 121 EQVMKSTTLQDMVDDYIQMKQ 141 >gi|332978237|gb|EGK14968.1| transcriptional repressor NsrR [Psychrobacter sp. 1501(2011)] Length = 171 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 22/163 (13%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT +DY +R LMY A+ D I+ IA + IS L K++ L + G +E++R Sbjct: 1 MRLTNYSDYALRTLMYLAVIPDRDTLATITDIANSYQISRSHLTKVIHQLAQIGYIESIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA--------------------SHKID 98 G+ GG+RL +PA I + +V++ TE F V CFA + Sbjct: 61 GKNGGIRLAKPAADIILGEVIRQTEPDFHVVPCFALLPSRTKPKENQVESLNTPMKYSES 120 Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 C + C L SV +A AF V+ Y++ +V N + +I Sbjct: 121 CAITPVCKLKSVFAEATQAFLKVMDDYTLADIVNNEEELWQIL 163 >gi|331085024|ref|ZP_08334111.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408724|gb|EGG88189.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 152 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A +++ P IS IA ISE +L +++ L KAG+++++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L R + I++ DV++A E + EC H + C G C V +K + Sbjct: 61 AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + + ++ LV ++K Sbjct: 121 NQTVDEIKLDRLVEESKAMK 140 >gi|254037192|ref|ZP_04871269.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 1_1_43] gi|226840298|gb|EEH72300.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia sp. 1_1_43] Length = 161 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG+ Sbjct: 22 QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGK 81 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + A I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 82 NGGIRLGKSASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 137 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 138 ELDNYTLADLVEENQPLYKLL 158 >gi|260588146|ref|ZP_05854059.1| iron-sulfur cluster assembly transcription factor IscR [Blautia hansenii DSM 20583] gi|331082288|ref|ZP_08331414.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541673|gb|EEX22242.1| iron-sulfur cluster assembly transcription factor IscR [Blautia hansenii DSM 20583] gi|330400774|gb|EGG80375.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium 6_1_63FAA] Length = 150 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A+++D I I+ IS+ +L ++++ L KAG+V + RG Sbjct: 1 MKLSTKGRYGLRALIDLALYSDEEAVSIQSISNRQNISDSYLEQLMRKLKKAGLVVSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL +PAD+I++ DV++A E S C A + C C V ++ + Sbjct: 61 AQGGYRLAKPADEISVGDVLRALEGSLEAVSCGAGNNEHCQGEDLCVTRYVWQEINKSIQ 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + + I LV ++ Sbjct: 121 ETVDSIKISQLVEESRKARE 140 >gi|333011161|gb|EGK30575.1| rrf2 family protein family protein [Shigella flexneri K-272] gi|333012645|gb|EGK32025.1| rrf2 family protein family protein [Shigella flexneri K-227] Length = 141 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A+ IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMALLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|242238239|ref|YP_002986420.1| transcriptional repressor NsrR [Dickeya dadantii Ech703] gi|242130296|gb|ACS84598.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech703] Length = 141 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + I+++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGKMTSITEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E + C + C + +C L VLR+A+ F Sbjct: 61 KNGGIRLGRDPATIRIGDVVRELE-PLALVNC---NHEFCHITSACRLKQVLRQAVEQFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V+ + ++ Sbjct: 117 QELDNYTLADMVKENPPLYQLL 138 >gi|114319388|ref|YP_741071.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114225782|gb|ABI55581.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola ehrlichii MLHE-1] Length = 162 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY RVL+Y I IA+ IS L K++ L G +ETVRG+ Sbjct: 1 MRLTVYSDYAFRVLVYLGTRPGERATIRGIADCYGISRNHLTKVVHQLGSQGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL R + I + +V++ TEE F + EC S + C + G C L VL +A AF Sbjct: 61 GGGLRLTRDPEGIGVGEVLRDTEEGFGLVECMRPSGRGMCRIEGGCRLRGVLGEATRAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 VL +Y++ L+ NR + ++ Sbjct: 121 AVLDRYTLADLLENRDELAQLLAG 144 >gi|149376004|ref|ZP_01893770.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893] gi|149359641|gb|EDM48099.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893] Length = 145 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A+ D I QIA++ IS L K++ L K G +ETVRG+ Sbjct: 1 MHITRYTDYSLRVLVYLAVQGDELATIQQIADSYEISRNHLMKVVHQLNKKGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL + I + +V+ TE+ V ECF+S C + CGL S+ +AL AF + Sbjct: 61 KGGMRLHMAPEDINVGILVRETEQDLSVVECFSSGDA-CRITPVCGLKSMFGEALAAFLE 119 Query: 121 VLTQYSIECLVRN--RSSIKKIFN 142 VL +Y++ ++ + R + ++ Sbjct: 120 VLDRYTLADIIHDQHRPQLLRLLQ 143 >gi|303241873|ref|ZP_07328367.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] gi|302590547|gb|EFL60301.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] Length = 149 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+H + P + IAE ISE +L ++ L KAG V++VRG Sbjct: 1 MKLSTKGRYGVKSMLDLALHNGEGPVALKSIAERQDISENYLEQLFATLRKAGHVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L + ITI +++A E S EC I C C + K + Sbjct: 61 SQGGYILANSPENITIGAILRALEGSLAPVECVVEDDPIKCTKSDQCVTRIIWEKIRDKV 120 Query: 119 FDVLTQYSIECLV----RNRSSIKKIFN 142 +V+ ++ L+ +N S IFN Sbjct: 121 NEVVDSITLYDLIEEYTKNNESKGYIFN 148 >gi|229917143|ref|YP_002885789.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468572|gb|ACQ70344.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp. AT1b] Length = 146 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY +R LMY A + I ++A+ IS+ + K++ L K G +E+VRGR Sbjct: 1 MRLTQTCDYALRTLMYSATFSHRLVTIQEVADQYNISKNHVMKVVYELGKHGYLESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RP D I + +VV+ E F + ECF + C + +C L VL +A+ AF Sbjct: 61 GGGFRLARPMDDINVGEVVRTME-PFELVECFGEGR--CVIAPACDLRGVLNEAMLAFLH 117 Query: 121 VLTQYSIECLVRNRS-SIKKIFN 142 VL +Y+I LV NR+ + + Sbjct: 118 VLDRYTIADLVVNRTNELAMLLG 140 >gi|188026362|ref|ZP_02961812.2| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827] gi|188020109|gb|EDU58149.1| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827] Length = 165 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + I+++ E +S + KI+ L G V+ RG+ Sbjct: 27 QLTSFTDYGLRALIYLASLPEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYVKATRGK 86 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA+ I + DVV+A E + C C + +C L VL +A+ F Sbjct: 87 NGGITLGQPAETIRVGDVVRALE-PLTLVNCSGEF---CHITPACRLKGVLHQAIQQFLK 142 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++++ +V++ S + ++ Sbjct: 143 ELDKHTLADMVKDNSPLYQLL 163 >gi|317500549|ref|ZP_07958771.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089351|ref|ZP_08338251.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898059|gb|EFV20108.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|330405414|gb|EGG84949.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium 3_1_46FAA] Length = 142 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A + + P I+ I+ ISE +L +++ L KAGIV +VRG Sbjct: 1 MKLSTKGRYGLRALIDLAQNGGEQPVSITSISTRQDISERYLEQLMSMLKKAGIVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG L + + I++ DV++A E S +C C + SC V +K ++ Sbjct: 61 AGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSCVTKYVWKKINDSI 120 Query: 119 FDVLTQYSIECLVRNR 134 + + ++ LV+ Sbjct: 121 NQTVDEIKLDQLVKEN 136 >gi|90019750|ref|YP_525577.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus degradans 2-40] gi|89949350|gb|ABD79365.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus degradans 2-40] Length = 146 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 89/143 (62%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVLMY + + I +IA++ IS+ L K++Q L G ++ +RG+ Sbjct: 1 MHITRFTDYSLRVLMYAGLRDGELCTIQEIADSYNISKNHLMKVVQELNIKGYLKAIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA++I + +V+ TE+ F + ECF+ C + +C L S+L +ALNAF Sbjct: 61 NGGLTLGRPANEINLGSLVRDTEQDFNIVECFSEADT-CTITPNCKLKSILAQALNAFLG 119 Query: 121 VLTQYSIECLV--RNRSSIKKIF 141 VL Y++E L+ R ++ + K+ Sbjct: 120 VLDDYTLEDLLAPRTKAPLMKLL 142 >gi|167644820|ref|YP_001682483.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167347250|gb|ABZ69985.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 151 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL++ A +D I +IA IS+ L K++Q L KAG V TVRGR Sbjct: 1 MRLTRYTDYAMRVLLHLAARDDGLASIGEIAALYDISQNHLMKVVQDLGKAGFVRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L RPADQI + VV+ TEE F + +C C + +C L VL +A AF Sbjct: 61 GGGVALARPADQIVVGQVVRQTEEGFQLVDC-----SQCLIAPACTLPRVLNEATAAFIG 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++E L+ R ++ +F Sbjct: 116 VLEKYTLEDLLDRRHQMRALFG 137 >gi|149923899|ref|ZP_01912287.1| Rrf2 family protein [Plesiocystis pacifica SIR-1] gi|149815242|gb|EDM74789.1| Rrf2 family protein [Plesiocystis pacifica SIR-1] Length = 145 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 75/132 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TDY +RVL+Y A + +I+EA IS L K++ L +AG + RGR Sbjct: 1 MRLTKHTDYALRVLIYVAAADGRQVSTDEISEAYGISGHHLVKVVGTLGRAGFLAVKRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L R +++ + +V++ATE F + EC +CPL G+C L S L +A AF Sbjct: 61 GGGVTLARDPEELRLGEVLEATEPDFAMVECMQEGNTECPLTGACSLVSPLYEAQRAFIA 120 Query: 121 VLTQYSIECLVR 132 L QY++ ++ Sbjct: 121 SLDQYTLADVLN 132 >gi|50122544|ref|YP_051711.1| transcriptional repressor NsrR [Pectobacterium atrosepticum SCRI1043] gi|81644039|sp|Q6D125|NSRR_ERWCT RecName: Full=HTH-type transcriptional repressor nsrR gi|49613070|emb|CAG76521.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 141 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F Sbjct: 61 KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITAACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ +V+ + K+ Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138 >gi|307132423|ref|YP_003884439.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937] gi|306529952|gb|ADM99882.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937] Length = 141 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E + C C + +C L VL++A+ F Sbjct: 61 KNGGIRLGRDPSTIRIGDVVRELE-PLSLVNCSKEF---CHITSACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + K+ Sbjct: 117 KELDNYTLADMVEENPPLYKLL 138 >gi|302386870|ref|YP_003822692.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197498|gb|ADL05069.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 146 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 66/137 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + Y +R+++ A+H +I+Q+AE IS+ +L +I+ L +AG V++ RG Sbjct: 1 MKFSTKGRYALRMMLEFALHPGECTKINQVAERQEISDKYLEQIVTILSRAGYVKSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L + + T+ +++ E S C C +C V ++ +A Sbjct: 61 QGGYYLTKDPSEYTVGMILRLAEGSLVPVTCLEDEVNPCSRSQNCATLMVWKELDHAISH 120 Query: 121 VLTQYSIECLVRNRSSI 137 V+ ++ LV + + Sbjct: 121 VVDGITLADLVEEQKRL 137 >gi|124515741|gb|EAY57250.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] gi|206602245|gb|EDZ38727.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 77/141 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY IRVL+Y + D P IS++AE+ IS L K++ L ++G + T RG+ Sbjct: 1 MQLTLYSDYSIRVLLYLSAKTDGPATISEVAESYGISRNHLVKVVHNLSQSGYIRTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+ L R +I+I +++ TE F + EC CP+ C L +V R AL AF Sbjct: 61 KGGMVLGRDPKEISIGGLLRQTEPDFRLVECLQEESSGCPIDQVCSLKAVFRTALYAFLK 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ + N +K I Sbjct: 121 TLDGYTLADITGNVGLLKPIL 141 >gi|271501898|ref|YP_003334924.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii Ech586] gi|270345453|gb|ACZ78218.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech586] Length = 141 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R I I DVV+ E + C K C + +C L VL++A+ F Sbjct: 61 KNGGIRLGRDPSTIRIGDVVRELE-PLSLVNCS---KAFCHITPACRLKQVLQQAVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + K+ Sbjct: 117 KELDNYTLADMVEQNPHLYKLL 138 >gi|225174416|ref|ZP_03728415.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] gi|225170201|gb|EEG78996.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter alkaliphilus AHT 1] Length = 140 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R + A+ P + +IA+ IS FL +I PL +AG++++VRG Sbjct: 1 MKVSAKGEYGVRAMAILALEFRAGPIPLREIAKREGISYQFLEQIFLPLRRAGLIDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L RP D+I + D+++A E EC D C +C + K + Sbjct: 61 AKGGYVLARPPDEIKVGDILRALEGPIAPVECVGEGNTDACGRSAACLTRGIWEKLRDTM 120 Query: 119 FDVLTQYSIECLVR 132 +VL ++ +++ Sbjct: 121 SEVLNDITLADVIK 134 >gi|168751471|ref|ZP_02776493.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4113] gi|168754748|ref|ZP_02779755.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4401] gi|168766456|ref|ZP_02791463.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4486] gi|168774110|ref|ZP_02799117.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4196] gi|168780609|ref|ZP_02805616.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4076] gi|195935968|ref|ZP_03081350.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4024] gi|208808424|ref|ZP_03250761.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4206] gi|208812580|ref|ZP_03253909.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4045] gi|208819958|ref|ZP_03260278.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4042] gi|209397401|ref|YP_002273720.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4115] gi|254796197|ref|YP_003081034.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. TW14359] gi|226736214|sp|B5Z2I4|NSRR_ECO5E RecName: Full=HTH-type transcriptional repressor nsrR gi|187770187|gb|EDU34031.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4196] gi|188014508|gb|EDU52630.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4113] gi|189001762|gb|EDU70748.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4076] gi|189357816|gb|EDU76235.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4401] gi|189363933|gb|EDU82352.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4486] gi|208728225|gb|EDZ77826.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4206] gi|208733857|gb|EDZ82544.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4045] gi|208740081|gb|EDZ87763.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4042] gi|209158801|gb|ACI36234.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4115] gi|209750226|gb|ACI73420.1| hypothetical protein ECs5154 [Escherichia coli] gi|254595597|gb|ACT74958.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] Length = 141 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGLMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|20807692|ref|NP_622863.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20516241|gb|AAM24467.1| predicted transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 149 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YGI+ + A++ + P + IAE +SE +L +++ L KA +V++VRG Sbjct: 1 MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLMAILRKADLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E S A+C +C G C V+ + ++ Sbjct: 61 AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVVEDTPFECSRAGGCPTKLVMERIRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V+ +++ +V + + + Sbjct: 121 NKVIDSITLQDMVEDYRRLNQ 141 >gi|160878171|ref|YP_001557139.1| BadM/Rrf2 family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426837|gb|ABX40400.1| transcriptional regulator, BadM/Rrf2 family [Clostridium phytofermentans ISDg] Length = 145 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI+N I IA IS+ +L +I+ L +AG V++ RG Sbjct: 1 MKISTKGRYALRLMLDLAINNTGEFITIKSIAGRQEISDKYLEQIITLLSRAGYVKSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + + T+ ++K E S C DC GSC V +K A Sbjct: 61 AQGGYRLTKEPKEYTVGMILKLIEGSLAPVSCVEEEDNDCNRYGSCATLFVYQKINEAVN 120 Query: 120 DVLTQYSIECLVRNRSSI 137 +V+ ++E LV + Sbjct: 121 NVVDNITLEDLVERHREL 138 >gi|319405537|emb|CBI79156.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 151 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 73/130 (56%), Positives = 101/130 (77%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPLV+AG ++TVRGR Sbjct: 1 MRLTKQTNYALRMLMYCASNQGALSRIPEIARAYAVSELFLFKILQPLVEAGFMKTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L +PA +I++ DV+K TE++F++AECF + +CPL+ CGL VL+KAL++FFD Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFYMAECFDNKLSNCPLINFCGLNIVLKKALDSFFD 120 Query: 121 VLTQYSIECL 130 VL+ SI L Sbjct: 121 VLSLTSIADL 130 >gi|21957349|gb|AAM84224.1|AE013666_4 hypothetical protein y0636 [Yersinia pestis KIM 10] gi|45435245|gb|AAS60805.1| Predicted transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] Length = 158 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG+ Sbjct: 19 QLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGK 78 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 79 NGGIRLGKPADQILIGDVVRQME-PLTLVNCSSDF---CHITPACRLKQVLNQAVQSFLK 134 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ S + K+ Sbjct: 135 ELDNYTLADMVKDNSPLYKLL 155 >gi|210615813|ref|ZP_03290794.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787] gi|210150149|gb|EEA81158.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787] Length = 151 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A +++ P IS I+ ISE +L +++ L +AG+++++RG Sbjct: 1 MKISTKGRYGLRALIDIAQYSEIEPVPISSISARQDISERYLEQLMALLKRAGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L + +I++ DV++A E + EC A H+ + C G C V +K + Sbjct: 61 AGGGYVLAKDVSEISVGDVLRALEGNLEPVECAAFHEEESCEAAGGCVTKYVWKKINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 + + ++ LV I++ Sbjct: 121 NRTVDEIDLKQLVEESKQIQQNLT 144 >gi|108758209|ref|YP_635032.1| Rrf2 family protein [Myxococcus xanthus DK 1622] gi|108462089|gb|ABF87274.1| Rrf2 family protein [Myxococcus xanthus DK 1622] Length = 148 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT DY +RVL+Y A P ++A+A IS+ L +++Q L G+V+ GR Sbjct: 1 MHLTLHADYSLRVLLYLATRTGRPVSTQEMADAYGISKHHLVRVVQTLAGQGVVDARAGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L R I + V++A E F + ECF + CP+ +CGL VL +A AF Sbjct: 61 SGGVVLARAPADIQVGSVLRAAEPDFHLVECFDRERNACPIAPACGLKGVLDEAREAFLA 120 Query: 121 VLTQYSIECLVRN-RSSIKKIF 141 VL +Y++ L+R R +++ F Sbjct: 121 VLDRYTLADLLRRSRPNLQDYF 142 >gi|163749814|ref|ZP_02157059.1| Rrf2 family protein [Shewanella benthica KT99] gi|161330328|gb|EDQ01307.1| Rrf2 family protein [Shewanella benthica KT99] Length = 152 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYGIR LMY AI + RIS+I + +S + KI+ L K G ++T+R Sbjct: 1 MQLTRYTDYGIRTLMYLAIQPERETLFRISEITQVFDLSPNHVSKIVHHLGKLGYLKTIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL + +I I +V+ E S +C K C L SC L VL +A+ A+ Sbjct: 61 GKSGGFRLGKSPKEINIGQLVRVLENSLTPIDCS---KPYCRLTPSCQLWGVLAEAVTAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL QYS+ +V N + K+ Sbjct: 118 LTVLDQYSLADIVSNNHELVKLL 140 >gi|323699033|ref|ZP_08110945.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. ND132] gi|323458965|gb|EGB14830.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans ND132] Length = 150 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A H D P RI IA+ +S +L K+++ L G V++ RG Sbjct: 1 MKLTTRSRYGTRMMLDIAQHGKDGPVRIQDIADRQGVSAKYLEKLIRKLKDVGFVKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L +PA +I I +VV A E + EC + K C + C + ++A +A + Sbjct: 61 PRGGHSLAKPAAEIPIGEVVHALEGDGSLVECRSGDKG-CSRMKECLTRRLWQEAADAMY 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 + L +++ L+ + + Sbjct: 120 ERLNTFTLADLINDAEQCR 138 >gi|157964032|ref|YP_001504066.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157849032|gb|ABV89531.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana ATCC 700345] Length = 149 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYG+R LMY A+H++ + RI++I E +S + K++ L K G ++TVR Sbjct: 1 MQLTRYTDYGLRTLMYLALHSERESLFRIAEITEVFDLSANHISKVVHHLGKLGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L +PA +I I VV+A E S +C K C +C L L A+NA+ Sbjct: 61 GKSGGFKLAKPASEINIGQVVRALENSLAPIDCS---KPYCLFTPACKLRGALADAVNAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL Y+++ +V N+ +K + Sbjct: 118 LAVLDGYTLDMIVTNKQELKSLL 140 >gi|30248932|ref|NP_841002.1| hypothetical protein NE0928 [Nitrosomonas europaea ATCC 19718] gi|30138549|emb|CAD84839.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC 19718] Length = 151 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L Y + + + I++IA+ IS + KI+ L + G V+T+RG+ Sbjct: 1 MRLTNYSDYALRILTYLGLKREELSTITEIADCYGISRNHVVKIVHHLGQLGYVDTLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I +V++ TE S + ECF S++ C + SC L + + +AL+AF Sbjct: 61 NGGIRLAHAPEKINIGEVIRHTETSMDIVECF-SNQNSCIIGCSCVLRTAISEALSAFMA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L+ R + + + Sbjct: 120 VLDDYTLADLIAPRRQLSRKLH 141 >gi|293393207|ref|ZP_06637522.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582] gi|291424353|gb|EFE97567.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582] Length = 141 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPKDKMTSISEVTEVYGVSRNHMVKIINQLSRIGLVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+A E + C C + +C L VL++ + F Sbjct: 61 KNGGIRLGQPAASIRIGDVVRALE-PLSLVNCSGDF---CHITPACRLKQVLQQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ +V + + + K+ Sbjct: 117 AELDNYTLADMVEDNAPLYKLL 138 >gi|117918506|ref|YP_867698.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3] gi|117610838|gb|ABK46292.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3] Length = 151 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRKTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +++A E S +C K C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCS---KPYCRFTPACQLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +VL QYS++ +V NR+ + + Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140 >gi|172057713|ref|YP_001814173.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990234|gb|ACB61156.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 148 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDYG+RVL+Y +H D + IA IS L K+ Q L K G VE+ RGR Sbjct: 1 MRITQYTDYGLRVLIYLGLHRDEVTPMPAIANHYGISSNHLMKVTQQLTKLGYVESTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R ++I I VV+ E + ECFA+ C + C L +L +AL AF Sbjct: 61 TGGLRLIRDPEEINIGKVVREME-PMDIVECFAADG-HCVIEPQCQLKGILARALRAFIR 118 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Q+++ L++N + +F Sbjct: 119 ELEQHTLAELLKNPYELNLLF 139 >gi|218551448|ref|YP_002385240.1| transcriptional repressor NsrR [Escherichia fergusonii ATCC 35469] gi|226737671|sp|B7LLW0|NSRR_ESCF3 RecName: Full=HTH-type transcriptional repressor nsrR gi|218358990|emb|CAQ91650.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|324112225|gb|EGC06203.1| transcriptional regulator [Escherichia fergusonii B253] gi|325499713|gb|EGC97572.1| transcriptional repressor NsrR [Escherichia fergusonii ECD227] Length = 141 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|114777146|ref|ZP_01452166.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1] gi|114552667|gb|EAU55127.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1] Length = 153 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 77/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y ++ + I++I++A I+ L K++ L + G + T RG+ Sbjct: 1 MQLTQYTDYSLRVLIYLGLYPERRCTITEISDAYDINRNHLVKVVHSLSQDGWITTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L QI I V++ TE + ECF + CP+ +C L L +A AF + Sbjct: 61 SGGMVLSFNPKQINIGAVIQGTEPHMNLLECFDNKYNTCPITSACVLKHALYQARKAFMN 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL+ Y++E ++ + + Sbjct: 121 VLSNYTLEDVLVQPEILISLLG 142 >gi|152973049|ref|YP_001338195.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580843|ref|YP_002240865.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342] gi|238892663|ref|YP_002917397.1| transcriptional repressor NsrR [Klebsiella pneumoniae NTUH-K2044] gi|288937522|ref|YP_003441581.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Klebsiella variicola At-22] gi|290512260|ref|ZP_06551627.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55] gi|189030887|sp|A6TH94|NSRR_KLEP7 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737672|sp|B5Y324|NSRR_KLEP3 RecName: Full=HTH-type transcriptional repressor nsrR gi|150957898|gb|ABR79928.1| conserved protein, Winged helix domain [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569901|gb|ACI11677.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342] gi|238544979|dbj|BAH61330.1| putative HTH-type transcriptional repressor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288892231|gb|ADC60549.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola At-22] gi|289775255|gb|EFD83256.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55] Length = 141 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA QI + DVV+ E + C + C + +C L L +A +F Sbjct: 61 KNGGIRLGKPAGQIRVGDVVRDLE-PLSLVNCSSEF---CHITPACRLKQALAEAAQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138 >gi|284049281|ref|YP_003399620.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] gi|283953502|gb|ADB48305.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] Length = 140 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI+ + I +++ ISE +L +I+ L +A +V++ RG Sbjct: 1 MKISTKGRYALRLMIDLAINGTESYVPIKSVSQRQEISEKYLEQIITQLSRAKLVKSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R T ++++A E S C C C + ++ +A Sbjct: 61 AQGGYKLVRDPKDYTAGEILRAVEGSLAPVACLEPGHAICDRAAHCVTLDLWKEIQDAID 120 Query: 120 DVLTQYSIECLVRNRSS 136 +++ ++E LV+ + Sbjct: 121 NIVDNTTLEDLVKKQEK 137 >gi|283786857|ref|YP_003366722.1| transcriptional repressor [Citrobacter rodentium ICC168] gi|282950311|emb|CBG89958.1| transcriptional repressor [Citrobacter rodentium ICC168] Length = 141 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG + +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFITAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKAANTIRIGDVVRELE-PLSLVNCNSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEQNQPLYKLL 138 >gi|114045552|ref|YP_736102.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7] gi|113886994|gb|ABI41045.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7] Length = 151 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +++A E S +C K C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCS---KPYCRFTPACQLKGVLAQAVQAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +VL QYS++ +V NR+ + + Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140 >gi|289208246|ref|YP_003460312.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thioalkalivibrio sp. K90mix] gi|288943877|gb|ADC71576.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. K90mix] Length = 143 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD+ +RVLMY + D ++ I+E I L KI+ L + G + T RG Sbjct: 1 MQLTRFTDFSLRVLMYLTVQPDDQRVTVTDISERFGIPRNHLVKIVHQLGQKGYLITRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L R + I I VV+ E + V +C CP++ C L VL A +AF Sbjct: 61 KGGGISLARAPESINIGAVVRDMEPNLKVVDC---ESPMCPILPGCQLRGVLDDARDAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY++ + ++ ++ + Sbjct: 118 AVLDQYTVRDVTQSPEHLRSLL 139 >gi|197303190|ref|ZP_03168232.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC 29176] gi|197297730|gb|EDY32288.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC 29176] Length = 151 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A +++ P I+ I++ ISE +L +++ L KAGIV+++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEETPVSITSISKRQDISERYLEQLMSMLKKAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R A +I++ +V++A E S EC + C SC V ++ ++ Sbjct: 61 ANGGYILARDAKEISVGEVLRALEGSLEPVECAGLDPRGGCQASESCVTKYVWKRINDSI 120 Query: 119 FDVLTQYSIECLVRN 133 + + LV Sbjct: 121 NRTVDDIWLSQLVEE 135 >gi|113968387|ref|YP_732180.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4] gi|113883071|gb|ABI37123.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4] Length = 151 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +++A E S +C K C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCS---KPYCRFTPACQLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +VL QYS++ +V NR+ + + Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140 >gi|147676569|ref|YP_001210784.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146272666|dbj|BAF58415.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 151 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R YG+R ++ A + ++ P + Q+AE ISE +L +++ L K G+V +VR Sbjct: 1 MKFSTRARYGLRAMVDLAQNYASNEPIPLFQVAERQGISEGYLEQLMTYLRKGGLVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117 G +GG L R +IT ++++ E +C + + C +C + + + Sbjct: 61 GAQGGYLLAREPSRITAGEIIRCLEGPLSPTDCVSEDDPEFCDRADACVTRLLWERVRES 120 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 VL S+E L +N I+ Sbjct: 121 VASVLDNTSLEDLCKNADKIR 141 >gi|119384427|ref|YP_915483.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374194|gb|ABL69787.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 147 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y + I +IA+A IS+ L K++ LV AG + ++RGR Sbjct: 1 MRLTRYTDYAMRVLLYLGREPERLCPIGEIAQAYGISQNHLMKVINDLVNAGFLASLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP +I I +V+ TE+ F + C +C + +CGLTSVL +A+ F Sbjct: 61 NGGIRLARPPAEINIGALVRHTEDDFDLVGC-----GNCIIAPACGLTSVLDEAMAGFMA 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL YS+ ++ R + N Sbjct: 116 VLDGYSLADVLARRPDFSYLLN 137 >gi|145600842|ref|YP_001164918.1| transcriptional repressor NsrR [Yersinia pestis Pestoides F] gi|162419331|ref|YP_001605273.1| transcriptional repressor NsrR [Yersinia pestis Angola] gi|165926673|ref|ZP_02222505.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. F1991016] gi|165936529|ref|ZP_02225097.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. IP275] gi|166011855|ref|ZP_02232753.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. E1979001] gi|166214016|ref|ZP_02240051.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. B42003004] gi|167400661|ref|ZP_02306170.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418774|ref|ZP_02310527.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423241|ref|ZP_02314994.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170026007|ref|YP_001722512.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis YPIII] gi|186893791|ref|YP_001870903.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis PB1/+] gi|294502487|ref|YP_003566549.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003] gi|108777100|gb|ABG19619.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Nepal516] gi|108781808|gb|ABG15866.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Antiqua] gi|145212538|gb|ABP41945.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Pestoides F] gi|162352146|gb|ABX86094.1| nitrite-sensitive repressor NsrR [Yersinia pestis Angola] gi|165915645|gb|EDR34254.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. IP275] gi|165921296|gb|EDR38520.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. F1991016] gi|165989214|gb|EDR41515.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. E1979001] gi|166204811|gb|EDR49291.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962768|gb|EDR58789.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050029|gb|EDR61437.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057411|gb|EDR67157.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752541|gb|ACA70059.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis YPIII] gi|186696817|gb|ACC87446.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis PB1/+] gi|262360517|gb|ACY57238.1| hypothetical protein YPD4_0329 [Yersinia pestis D106004] gi|262364465|gb|ACY61022.1| hypothetical protein YPD8_0332 [Yersinia pestis D182038] gi|294352946|gb|ADE63287.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003] Length = 154 Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG+ Sbjct: 15 QLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGK 74 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F Sbjct: 75 NGGIRLGKPADQILIGDVVRQME-PLTLVNCSSDF---CHITPACRLKQVLNQAVQSFLK 130 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ +V++ S + K+ Sbjct: 131 ELDNYTLADMVKDNSPLYKLL 151 >gi|90418251|ref|ZP_01226163.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90337923|gb|EAS51574.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 151 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RV++Y A D + ++ I+EA IS L K++ L KAG V T+RGR Sbjct: 1 MRLTRYTDYALRVVIYLAARPDGLSSVADISEAYGISRNHLTKVVHELGKAGYVTTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA QI + ++V+ TE+ F +A+C C + +CG++ VL +A+ AF Sbjct: 61 SGGIRLARPASQIFVGELVRTTEDGFDLADC-----NRCIIQPACGMSGVLAEAVTAFLA 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +YS L + I +F Sbjct: 116 VLDRYSFADLPKREIDILSLF 136 >gi|326201925|ref|ZP_08191795.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] gi|325987720|gb|EGD48546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] Length = 148 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A H ++ + +AE +SE +L ++ L K+G+V+++RG Sbjct: 1 MKVSTKGRYGLRAIVDLAAHESEGQVSLKSVAERQKLSENYLEQLFSSLKKSGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L RPAD+IT+ D++++ E + EC C C V K + Sbjct: 61 AQGGYLLSRPADKITVGDILRSLEGTLCPVECIDPDLPGSCDRADECVTADVWAKIRDKI 120 Query: 119 FDVLTQYSIECLVRN 133 +V+ ++ LV Sbjct: 121 NEVVDSITLADLVSE 135 >gi|150390216|ref|YP_001320265.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950078|gb|ABR48606.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus metalliredigens QYMF] Length = 149 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + AIH + P + IAE IS+ +L +++ L KAG+V++VRG Sbjct: 1 MKLSTKGRYGLKAMFDLAIHQGEGPIPLKHIAERQKISDHYLEQLIASLRKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L D++ + ++++ E +EC C C + K + Sbjct: 61 AQGGYMLANSPDKVVVGEIIRVLEGPLGPSECVLEEDPTACARADYCVTRVIWEKIRVSI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 DV+ +++ +V + + Sbjct: 121 SDVIDNITLQDMVDDYHKLN 140 >gi|85714309|ref|ZP_01045297.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A] gi|85698756|gb|EAQ36625.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A] Length = 165 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT DY +R+LMY A H D I + A IS L K+ L +AG ++ VRGR Sbjct: 24 MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 83 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++I + DV+ ATE F + ECF+S+ CP+ SC L + LR+ALNAF Sbjct: 84 SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 142 Query: 121 VLTQYSIECLVRNRSS 136 L +Y++ L+ N Sbjct: 143 TLDRYTLADLILNPKD 158 >gi|77361335|ref|YP_340910.1| hypothetical protein PSHAa2419 [Pseudoalteromonas haloplanktis TAC125] gi|76876246|emb|CAI87468.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 149 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 5/145 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M++++ TDY +RVL+Y AI+ + I +IAE +S+ L K++Q L G + + R Sbjct: 1 MNISRFTDYSLRVLIYLAINKNTNEIKTIKEIAECYGVSKNHLMKVVQQLSAQGYINSTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG++L A+QI I +V++ E + ECF + C + +C L VL A+ +F Sbjct: 61 GKNGGIKLNHAAEQINIGQLVRSFEGKSALVECFGENNF-CIITPACQLKKVLSHAIESF 119 Query: 119 FDVLTQYSIECLVR--NRSSIKKIF 141 F+ L QY++ L+ N++ + KI Sbjct: 120 FNCLDQYTLADLINGPNKAVLSKIL 144 >gi|125973237|ref|YP_001037147.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003715|ref|ZP_05428703.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281417437|ref|ZP_06248457.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|125713462|gb|ABN51954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|255992276|gb|EEU02370.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281408839|gb|EFB39097.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|316940532|gb|ADU74566.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 143 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+H + P + IAE + E +L ++ L KAG + +VRG Sbjct: 1 MWLSTKGRYGLKAMLDLALHNGEGPVALKSIAERQNLPENYLEQLFATLKKAGHITSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L + D ITI ++++ E S +C C +C V K ++ Sbjct: 61 AQGGYLLSKDPDSITIGSILRSLEGSLAPVDCVVEDSSPKCDRFDNCVTKIVWEKIRDSV 120 Query: 119 FDVLTQYSIECLVRN 133 + + ++ LV+ Sbjct: 121 NEAVDSITLGDLVKE 135 >gi|218887677|ref|YP_002436998.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758631|gb|ACL09530.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 150 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+L+ A+H D P I IA+ IS +L K+++ L KAG + + G Sbjct: 1 MKLTTRSRYGTRMLLDIAMHGTDAPVSIRDIAKRQGISVKYLEKLIRVLRKAGYIRSTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +PA +I + DVV A EES C CP + C ++ +A A + Sbjct: 61 AHGGYQLTQPASEIPVGDVVFALEESLAPYTC-DEENPCCPRMAVCLTRTIWDEASRAMY 119 Query: 120 DVLTQYSIECLVRNRS 135 L +++ L+R+ S Sbjct: 120 KKLNSFTLADLMRDAS 135 >gi|148554707|ref|YP_001262289.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499897|gb|ABQ68151.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 147 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL++ AI++D I +I+ +S L K++ L + G +ETVRGR Sbjct: 1 MRLTRYTDYSLRVLIHLAINDDRLCSIGEISRTYDVSHNHLMKVVNALSRDGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA++IT+ +VV+ TEE F +A+C C L CGLT VL +A+ A Sbjct: 61 TGGMRLARPANEITVGEVVRRTEEGFQLADCSG-----CALSPVCGLTGVLAEAMQAMMT 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 V Y + L+ +R +++++ N Sbjct: 116 VFDSYKVSDLLTDREAMRRLMN 137 >gi|157155926|ref|YP_001465677.1| transcriptional repressor NsrR [Escherichia coli E24377A] gi|157163642|ref|YP_001460960.1| transcriptional repressor NsrR [Escherichia coli HS] gi|170021812|ref|YP_001726766.1| transcriptional repressor NsrR [Escherichia coli ATCC 8739] gi|194439542|ref|ZP_03071616.1| transcriptional repressor NsrR [Escherichia coli 101-1] gi|209921666|ref|YP_002295750.1| transcriptional repressor NsrR [Escherichia coli SE11] gi|218556730|ref|YP_002389644.1| transcriptional repressor NsrR [Escherichia coli IAI1] gi|253775197|ref|YP_003038028.1| transcriptional repressor NsrR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164107|ref|YP_003047215.1| transcriptional repressor NsrR [Escherichia coli B str. REL606] gi|297517580|ref|ZP_06935966.1| transcriptional repressor NsrR [Escherichia coli OP50] gi|307314874|ref|ZP_07594466.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|312965852|ref|ZP_07780078.1| rrf2 family protein [Escherichia coli 2362-75] gi|189030882|sp|A7ZV48|NSRR_ECO24 RecName: Full=HTH-type transcriptional repressor nsrR gi|189030883|sp|A8A7S3|NSRR_ECOHS RecName: Full=HTH-type transcriptional repressor nsrR gi|189030885|sp|B1IT28|NSRR_ECOLC RecName: Full=HTH-type transcriptional repressor nsrR gi|226736216|sp|B7M8T8|NSRR_ECO8A RecName: Full=HTH-type transcriptional repressor nsrR gi|226737669|sp|B6I282|NSRR_ECOSE RecName: Full=HTH-type transcriptional repressor nsrR gi|157069322|gb|ABV08577.1| transcriptional repressor NsrR [Escherichia coli HS] gi|157077956|gb|ABV17664.1| transcriptional repressor NsrR [Escherichia coli E24377A] gi|169756740|gb|ACA79439.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC 8739] gi|194421541|gb|EDX37554.1| transcriptional repressor NsrR [Escherichia coli 101-1] gi|209914925|dbj|BAG79999.1| conserved hypothetical protein [Escherichia coli SE11] gi|218363499|emb|CAR01153.1| DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|242379700|emb|CAQ34524.1| NsrR transcriptional repressor [Escherichia coli BL21(DE3)] gi|253326241|gb|ACT30843.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976008|gb|ACT41679.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253980164|gb|ACT45834.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|306905677|gb|EFN36206.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|309704683|emb|CBJ04033.1| transcriptional repressor [Escherichia coli ETEC H10407] gi|312289095|gb|EFR16989.1| rrf2 family protein [Escherichia coli 2362-75] gi|315063492|gb|ADT77819.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|323182284|gb|EFZ67694.1| rrf2 family protein family protein [Escherichia coli 1357] gi|323380429|gb|ADX52697.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11] gi|323946026|gb|EGB42063.1| transcriptional regulator [Escherichia coli H120] gi|323960327|gb|EGB55967.1| transcriptional regulator [Escherichia coli H489] gi|323970567|gb|EGB65826.1| transcriptional regulator [Escherichia coli TA007] gi|324118743|gb|EGC12635.1| transcriptional regulator [Escherichia coli E1167] Length = 141 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKSASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138 >gi|325661219|ref|ZP_08149846.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472726|gb|EGC75937.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium 4_1_37FAA] Length = 180 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 2/139 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R L+ A +++ P IS IA ISE +L +++ L KAG+++++RG Sbjct: 30 KLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRGA 89 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GG L R + I++ DV++A E + EC H + C G C V +K + Sbjct: 90 GGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESIN 149 Query: 120 DVLTQYSIECLVRNRSSIK 138 + + ++ LV ++K Sbjct: 150 QTVDEIKLDRLVEESKAMK 168 >gi|167037461|ref|YP_001665039.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040123|ref|YP_001663108.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp. X514] gi|256752922|ref|ZP_05493755.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus CCSD1] gi|289578240|ref|YP_003476867.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermoanaerobacter italicus Ab9] gi|297544520|ref|YP_003676822.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914207|ref|ZP_07131523.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X561] gi|307265215|ref|ZP_07546774.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter wiegelii Rt8.B1] gi|307724558|ref|YP_003904309.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115875|ref|YP_004186034.1| Rrf2 family transcriptional regulator [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390150|ref|ZP_08211711.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus JW 200] gi|166854363|gb|ABY92772.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X514] gi|166856295|gb|ABY94703.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748202|gb|EEU61273.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus CCSD1] gi|289527953|gb|ADD02305.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter italicus Ab9] gi|296842295|gb|ADH60811.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889142|gb|EFK84288.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X561] gi|306919837|gb|EFN50052.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter wiegelii Rt8.B1] gi|307581619|gb|ADN55018.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp. X513] gi|319928966|gb|ADV79651.1| transcriptional regulator, Rrf2 family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993798|gb|EGD52229.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter ethanolicus JW 200] Length = 149 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YGI+ + A++ + P + IAE +SE +L +++ L KA +V++VRG Sbjct: 1 MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLIAILRKADLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E S A+C +C G C V+ + ++ Sbjct: 61 AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVLEDTPFECSRAGGCPTKLVMERIRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V+ +++ +V + + + Sbjct: 121 NKVIDSITLQDMVDDYRRLNQ 141 >gi|86139275|ref|ZP_01057845.1| rrf2 family protein [Roseobacter sp. MED193] gi|85824119|gb|EAQ44324.1| rrf2 family protein [Roseobacter sp. MED193] Length = 157 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 78/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA + D S+IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAVRLLMYCAANADRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R ++I I +V + E + + ECFA CPL +C L L A AF+ Sbjct: 61 NGGMALGRRPEEIQIGNVFRDVEGALPMVECFADADNTCPLASACRLKVALSDAAQAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++E LV + + +I Sbjct: 121 SLDDITLEALVCDNHDLMRILQ 142 >gi|260887774|ref|ZP_05899037.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas sputigena ATCC 35185] gi|330838672|ref|YP_004413252.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] gi|260862450|gb|EEX76950.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas sputigena ATCC 35185] gi|329746436|gb|AEB99792.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] Length = 143 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R++M A++ + P RI IA ISE +L +I+ L KAG V++ RG Sbjct: 1 MKISTRGRYALRLMMDIAMNGQNEPVRIKDIARRQEISEKYLEQIVSVLNKAGFVKSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R + T ++ E S C + DCP C + +K A Sbjct: 61 PQGGYRLMRAPQEYTAGSILCLIEGSLAPVACMDMEENDCPRHERCATLFLWQKLHEAMK 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 DV+ S+ L+ + + + Sbjct: 121 DVIENVSLSDLIEMQRELDE 140 >gi|149203563|ref|ZP_01880532.1| rrf2 family protein [Roseovarius sp. TM1035] gi|149142680|gb|EDM30722.1| rrf2 family protein [Roseovarius sp. TM1035] Length = 150 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 60/142 (42%), Positives = 86/142 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IR+LM+CA ++D ++IAE C ISE L +++ L + G + T RGR Sbjct: 1 MRITKRTNIAIRLLMFCAANSDRLVTKAEIAERCNISESHLAQVINRLSQLGFLYTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RP QIT+ DV + E+ VAECFA CPL +C L L A+ AF+ Sbjct: 61 TGGVRLGRPMSQITVGDVFRQLEQHTPVAECFADVDNTCPLTKACRLRVALVDAVEAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L + +++ LV N ++ IF+ Sbjct: 121 HLDEVTLDALVCNNDALFAIFS 142 >gi|268609758|ref|ZP_06143485.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 145 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H D + +IAE IS+ +L +I+ L K+ ++ T RG Sbjct: 1 MKISTKGRYALRMLFDLASHYDEGFISLKEIAERQNISKKYLEQIVPLLNKSNLLRTNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R A++IT+ DV++ATE S C +CP G C V ++ Sbjct: 61 NKGGYMLARKANEITVADVLEATEGSLAPVACLEFEPNECPRAGECSTLFVWEGLYSSIK 120 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ ++ + S + Sbjct: 121 KYLSSISLQDIIDHSSDL 138 >gi|121604234|ref|YP_981563.1| BadM/Rrf2 family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593203|gb|ABM36642.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas naphthalenivorans CJ2] Length = 168 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 77/132 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R LMY A + + I IA+A I++ L K++ L G+VE++RGR Sbjct: 1 MRLTTYTDYALRTLMYLAANRERLVTIQDIADAHGIAKNHLTKVVHQLGILGVVESLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R QI I VV++TE F++AECF K C + +C L VL A A+ Sbjct: 61 NGGLRLGREPGQINIGAVVRSTEPDFYMAECFDPGKSHCIMSAACSLKDVLNDATMAYLA 120 Query: 121 VLTQYSIECLVR 132 VL +++ L++ Sbjct: 121 VLDGVTLDYLMK 132 >gi|325290921|ref|YP_004267102.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] gi|324966322|gb|ADY57101.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] Length = 149 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A++ + P I+ IA+ ISE +L ++L + + G+++++RG Sbjct: 1 MKISTKGRYGLRAILDVALNEKEGPVTINSIAKRQEISERYLEQLLIVMKQRGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L + +I++ DV++A E +C + C C V + Sbjct: 61 FQGGYLLNKEPREISVGDVIRALEGPIAPVDCVNDDDTEQCSRSNYCVTKIVWEDLKQSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 VL YS+ L+ ++ I Sbjct: 121 TKVLDSYSLRDLMEEEEKVRSI 142 >gi|164688544|ref|ZP_02212572.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM 16795] gi|164602957|gb|EDQ96422.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM 16795] Length = 157 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + ++ H+ P I IA I E +L +I L KA ++++VRG Sbjct: 1 MKLSTKGRYGLKAMFELSLTHSKGPVSIKTIAAKQNIPEQYLEQIFSKLKKANLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R A +IT+ DV+ E +++C K C SC V K +A Sbjct: 61 AQGGYLLSRKASEITVYDVLTVLEGPVSISDCLLD-KDSCENSDSCVTKLVWEKMRDAMD 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 +V+ ++ +V N + I Sbjct: 120 NVMKSITLCDMVNNYNETHNI 140 >gi|78066618|ref|YP_369387.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|77967363|gb|ABB08743.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] Length = 171 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118 GG+RL + Q+T+ VV+ATE F + CF++ C + C L VL A +AF Sbjct: 61 NGGLRLFPESLQLTVGQVVRATESDFALVGCFSAEGESRGCVIEPQCRLKGVLAAARDAF 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 F L ++++ LV + + + Sbjct: 121 FAELDRHTLGELVEPAAPLVALLG 144 >gi|225573521|ref|ZP_03782276.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM 10507] gi|225039118|gb|EEG49364.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM 10507] Length = 142 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A+H++ P I IA IS +L +++ + +AG+V +VRG Sbjct: 1 MKLSTKGRYGLRAMVDLAVHSETGPVSIQSIANRQDISVSYLEQLVGKMRRAGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 GG RL + +I++ DV++A E + +C + C C V +K + Sbjct: 61 ATGGYRLAKSPSEISVGDVLRALEGTLDAVDCPGNLEVSTCKASQKCVTKYVWKKINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 + IE LV+ + + Sbjct: 121 SQAVDTIMIEQLVQESKKVNGL 142 >gi|164686973|ref|ZP_02211001.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM 16795] gi|164603858|gb|EDQ97323.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM 16795] Length = 147 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + Y +R+++ AI++D RI IA+ IS+ +L +I+ L +AG +++VRG Sbjct: 5 KISTKGRYALRLMIDLAINDDGKCIRIRDIAKRQEISDKYLEQIISILNRAGYIKSVRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL + + T+ +++ TE S C C C + +K A D Sbjct: 65 QGGHRLAKHPSEYTVGMILRLTEGSLSPVACLDDEVNQCTRQAQCATLELWKKLDKAISD 124 Query: 121 VLTQYSIECLVR 132 V+ ++E LV+ Sbjct: 125 VVDNVTLEDLVQ 136 >gi|319763901|ref|YP_004127838.1| transcriptional regulator, rrf2 family [Alicycliphilus denitrificans BC] gi|330823835|ref|YP_004387138.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118462|gb|ADV00951.1| transcriptional regulator, Rrf2 family [Alicycliphilus denitrificans BC] gi|329309207|gb|AEB83622.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus denitrificans K601] Length = 163 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYALRVLMYCAASQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA +I + +V+ TE F + ECF + C + C L SVL A A+ Sbjct: 61 GRGGGMRLMKPAHEINLGAIVRMTETDFDMVECFNAELNQCRMSSHCRLQSVLSNATRAY 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 VL S+ LV + + + Sbjct: 121 LAVLDGLSVADLVAPQPAASQ 141 >gi|46578944|ref|YP_009752.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603455|ref|YP_967855.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|464693|sp|P33395|RRF2_DESVH RecName: Full=Protein rrf2 gi|290384|gb|AAA72001.1| rrf2 [Desulfovibrio vulgaris str. Hildenborough] gi|46448357|gb|AAS95011.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563684|gb|ABM29428.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] gi|311232802|gb|ADP85656.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 150 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+L+ A+H + P I IA+ IS +L K+++ L KAG + + G Sbjct: 1 MKLTTRSRYGTRMLLDIAMHGSEQPVSIKDIAQRQGISVKYLEKLIRVLRKAGYITSTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L A+ I + DVV A EE EC CP + C ++ +A A + Sbjct: 61 AHGGYQLAHKAEDIPVGDVVYALEEMEAPVEC-DEENPCCPRMAVCLTRTIWGEAAKAMY 119 Query: 120 DVLTQYSIECLVRNRS 135 L +++ L+R+ S Sbjct: 120 RKLNTFTLADLMRDAS 135 >gi|298291178|ref|YP_003693117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296927689|gb|ADH88498.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 146 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RV+++ H+D I +IA +S L K++Q L AG VETVRGR Sbjct: 1 MKLTRYTDYAMRVMIHLGTHDDRLASIPEIARIYDLSHSNLMKVVQDLGHAGYVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL RPADQI + ++V+ TE F + +C C + +CGL +L +A AF Sbjct: 61 HGGVRLARPADQINLGELVRHTEAGFDLVDCQG-----CLIAPACGLPGILAEATRAFLS 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL +Y++ L+ RS+++++F Sbjct: 116 VLDKYTVADLLGRRSALRQLF 136 >gi|156932409|ref|YP_001436325.1| transcriptional repressor NsrR [Cronobacter sakazakii ATCC BAA-894] gi|156530663|gb|ABU75489.1| hypothetical protein ESA_00188 [Cronobacter sakazakii ATCC BAA-894] Length = 166 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TD+G+R L+Y A + IS++ E +S + KI+ L +AG V VRG+ Sbjct: 27 QLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGK 86 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA I I DVV+ E + C ++ C + +C L VL A+ F Sbjct: 87 NGGIRLGKPAATIRIGDVVRELE-PLSIVNCSSAF---CHITPACRLKQVLGDAVARFLQ 142 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV+ + K+ Sbjct: 143 ELDNYTLADLVQENQPLYKLL 163 >gi|296116983|ref|ZP_06835584.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976465|gb|EFG83242.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 167 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y D I IA+ ISE L K++ L + G + T RGR Sbjct: 1 MRLTLYTDYALRTLLYLGAKPDTRVAIHDIAQTYDISENHLVKVVHKLGRGGFIVTKRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R I I D+V+ TEE + C K C L G C L ++ +ALNAF Sbjct: 61 NGGLLLARAPQDIRIGDIVRYTEEDMGIVAC-NQEKGSCRLAGVCRLQGLMGEALNAFMS 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL + ++ ++ + ++ Sbjct: 120 VLDRRTLADVMTHPHLLQ 137 >gi|67459267|ref|YP_246891.1| putative transcriptional regulator [Rickettsia felis URRWXCal2] gi|67004800|gb|AAY61726.1| Putative transcriptional regulator [Rickettsia felis URRWXCal2] Length = 142 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 66/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERVCSVKEISEYYNISLNHLVKVIHKLAQLGYINSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + + D+++ E + + ECF + C + SC +++A AF Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120 Query: 121 VLTQYSIEC 129 L Y++E Sbjct: 121 TLNNYTLED 129 >gi|260599473|ref|YP_003212044.1| transcriptional repressor NsrR [Cronobacter turicensis z3032] gi|260218650|emb|CBA33971.1| HTH-type transcriptional repressor nsrR [Cronobacter turicensis z3032] Length = 141 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+ E + C ++ C + +C L VL A+ F Sbjct: 61 KNGGIRLGKPAATIRIGDVVRELE-PLSIVNCSSAF---CHITPACRLKQVLGDAVARFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV+ + K+ Sbjct: 117 QELDNYTLADLVQENQPLYKLL 138 >gi|261342839|ref|ZP_05970697.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC 35316] gi|288314881|gb|EFC53819.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC 35316] Length = 141 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPAGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I + DVV+ E + C ++ C + +C L L +A+ +F Sbjct: 61 KNGGIRLGKPAQSIRVGDVVRELE-PLSLVNCSSAF---CHITPACRLKQALSQAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|288940602|ref|YP_003442842.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895974|gb|ADC61810.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum DSM 180] Length = 160 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH P ++ IA+ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHQGQGPIALADIAQRQGISLSYLEQLFAKLRKRGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I + +V+ A +ES C +H +C G C + + + Sbjct: 61 PGGGYNLARKPVEIHVAEVIAAVDESVDTTRCGGAH--NCQNNGPCLTHDLWHDLSDRIY 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L Q ++ LV R S+ + Sbjct: 119 DYLNQIDLQTLVDQRDSLGQ 138 >gi|170733208|ref|YP_001765155.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254248038|ref|ZP_04941359.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184] gi|124872814|gb|EAY64530.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184] gi|169816450|gb|ACA91033.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia MC0-3] Length = 171 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + Q+T+ +VV+ATE F + CF++ + C + C L VL A +A Sbjct: 61 NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L ++++ L S + + Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145 >gi|237749286|ref|ZP_04579766.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229380648|gb|EEO30739.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 139 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 82/140 (58%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++TDY +R+LMY A H + I++IAE IS L KI+ L + +E++RG Sbjct: 1 MQLTQQTDYALRILMYAAAHPERLVNITEIAELYGISRSHLTKIVANLASSQYLESIRGN 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG+RL +PA +I I ++++ E + +C + + C + +C L V +A +AF Sbjct: 61 KGGIRLNKPASEINIGEIIRRFE-PLAIVDCMSKTR-SCVITPNCKLKHVFFEATDAFLK 118 Query: 121 VLTQYSIECLVRNRSSIKKI 140 QY++ ++ N + I+++ Sbjct: 119 TFDQYTLADML-NPTLIRQL 137 >gi|323702187|ref|ZP_08113854.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] gi|323532874|gb|EGB22746.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] Length = 147 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H P + +AE +SE +L +++ L KAG+V+++RG Sbjct: 1 MRLSTKGHYGLKAMFDLAMHYGAEPIPLKLVAERQSLSEHYLEQLIAVLRKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L RP +I + DV++A E +C + + C V C + K ++ Sbjct: 61 AQGGYILARPPAEIKVGDVIRALEGPIAPLDCVSEQEPTLCEKVDYCISRDIWAKVRDSI 120 Query: 119 FDVLTQYSIECLVRNRSS 136 +VL ++E + R Sbjct: 121 AEVLDSITLEDMCREAEK 138 >gi|182418878|ref|ZP_02950135.1| Rrf2 family protein [Clostridium butyricum 5521] gi|237667382|ref|ZP_04527366.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377161|gb|EDT74729.1| Rrf2 family protein [Clostridium butyricum 5521] gi|237655730|gb|EEP53286.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 150 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R + A H P I I++ +SE +L ++ PL +A I+ ++RG Sbjct: 1 MKLSTKGRYGVRAMAELAAHYGGAPISIKTISKEQNLSEYYLEQLFSPLRRANIIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG LC+ +IT+ D++ E +A+C C SC V K N+ Sbjct: 61 AQGGYVLCKAPSEITVGDIMTILEGPIEIADCIDG--YACDSEHSCATKFVWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 DV+ S++ +V N IKK Sbjct: 119 DVMNSISLQDIVDNYEKIKK 138 >gi|188580176|ref|YP_001923621.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi BJ001] gi|179343674|gb|ACB79086.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium populi BJ001] Length = 160 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + + I++IA A ISE L K++ L + G+++T+RGR Sbjct: 1 MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + VV+ TE+ + ECF++ C + C L L +AL AF Sbjct: 61 GGGLRLAKPPGEIVVGAVVRETEDDLALVECFSAG--SCAITAPCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142 VL +Y++ L+ I ++ Sbjct: 119 VLDRYTLADLLGGSEGDEIARLLG 142 >gi|330993730|ref|ZP_08317664.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329759304|gb|EGG75814.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 151 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y IH D I ++A+A ISE L KI+ L + G +ET+RGR Sbjct: 1 MRLTLHTDYALRTLLYLGIHTDRLTSIREVAQAYGISENHLVKIIHRLGQGGFIETIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKA 114 GG+RL RPA I I DVV+ TEE + C C L +C L VL +A Sbjct: 61 NGGLRLGRPAASILIGDVVRYTEEDMALVNCMQPADPERPDMKPCILADACRLRGVLGEA 120 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 L +F VL +Y++ ++ +R Sbjct: 121 LGSFIAVLDRYTLADVITDRE 141 >gi|134298630|ref|YP_001112126.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051330|gb|ABO49301.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum reducens MI-1] Length = 149 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H P + +AE ISE +L +++ L K G+V+++RG Sbjct: 1 MRLSTKGHYGLKAMFDLAMHYGSEPIPLKVVAERQNISEHYLEQLIAVLRKVGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 +GG L +P I + DVV+A E +C + C V C + + ++ Sbjct: 61 AQGGYILAKPPSDIKVGDVVRALEGPIAPLDCVSELEPTVCEKVDYCISRDIWARVRDSI 120 Query: 119 FDVLTQYSIECLV 131 +VL ++E + Sbjct: 121 AEVLDSITLEDMC 133 >gi|154503925|ref|ZP_02040985.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149] gi|153795524|gb|EDN77944.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149] Length = 156 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A H + P I+ IAE ISE +L +++ L KAGI++++RG Sbjct: 1 MKLSTKGRYGLRALIDLAQHGGEGPVSITSIAERQEISERYLEQLMSKLKKAGIIQSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 +GG L + +++++ +V++A E EC + C +C V ++ ++ Sbjct: 61 AQGGYVLAKELEEVSVGEVLRALEGDLNPVECSGFLLEGGCQAADNCVTKYVWQRINDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + + +++ LV ++K+ Sbjct: 121 NQTVDEMNLKALVEVGENLKE 141 >gi|295676448|ref|YP_003604972.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] gi|295436291|gb|ADG15461.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] Length = 176 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ D + I I+EA IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYALRVLLYLAVRGDGLSTIQDISEAYGISKNHLMKVVQQLGEFGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ DVV+ TE F + C + C + C L L+ A A Sbjct: 61 NGGLRLSAQSLSLTVGDVVRVTESDFALVGCLPDRQGQQRPCVITSQCRLRGALQAANLA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 F L +++I + + +S + + G Sbjct: 121 FLAELDRFTIGDVAQPKSPLAALLGLG 147 >gi|332285364|ref|YP_004417275.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] gi|330429317|gb|AEC20651.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] Length = 151 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LMY H D I+++A+A ISE L KI L + G +ET+RG+ Sbjct: 1 MRLTTMTDYAMRLLMYVGRHPDRLCTIAEVAQAYGISEPHLMKITHRLAQRGWLETIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I + VV+ TE + ECF ++ C L G C LT+++ AL F Sbjct: 61 NGGMRLAHPPEEINLGAVVRDTENDLALVECFVANNA-CTLSGQCNLTAIIDGALQQFMQ 119 Query: 121 VLTQYSIECLV 131 L +Y++ ++ Sbjct: 120 HLDRYTLADII 130 >gi|167621980|ref|YP_001672274.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352002|gb|ABZ74615.1| transcriptional regulator, BadM/Rrf2 family [Shewanella halifaxensis HAW-EB4] Length = 149 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYG+R LMY A++++ + RIS+I E +S + K++ L K G ++TVR Sbjct: 1 MQLTRYTDYGLRTLMYLAVNSERESLFRISEITEVFDLSANHISKVVHHLGKLGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L +PA +I I VV+A E S +C K C +C L L A+NA+ Sbjct: 61 GKSGGFKLAKPAAEINIGQVVRALENSLAPIDCS---KPYCLFTPACKLKGALGDAVNAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL Y+++ +V N+ +K + Sbjct: 118 LAVLDAYTLDMIVTNKQELKSLL 140 >gi|254485469|ref|ZP_05098674.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101] gi|214042338|gb|EEB82976.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101] Length = 152 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 73/137 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT T+Y +R L AI R+ +A+ +S + KI+ L KAG +ETVRGR Sbjct: 1 MKLTSYTNYAMRSLQLAAIKAPDLVRVDDVAKIHNLSRPHIMKIVHELGKAGYLETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R I + DVV+ TE V ECF K CPL+G C L+ +++A AF Sbjct: 61 GGGFRLARDPADIIVGDVVRITEGPLDVVECFNPEKNTCPLIGICILSRKMQEATAAFMA 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL +I + NR + Sbjct: 121 VLDDLTIADITANRGQL 137 >gi|296100945|ref|YP_003611091.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055404|gb|ADF60142.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG+ Sbjct: 19 QLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRGK 78 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA I I DVV+ E + C + C + +C L L A+ +F Sbjct: 79 NGGIRLGKPAQSIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSLAVQSFLK 134 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 135 ELDNYTLADLVEENQPLYKLL 155 >gi|294634461|ref|ZP_06712997.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685] gi|291092171|gb|EFE24732.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685] Length = 140 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + ISQ+ E +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDFGLRALVYMAALPEGQMTSISQVTEVYGVSRNHMVKIINQLSRAGFVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL RPA +I I DVV+ E + C S C + +C L VL++A AF Sbjct: 61 KNGGIRLGRPASEIRIGDVVRELE-PLTLVNCSQSF---CHITPACRLKPVLQRATEAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L + ++ L+ + S + K+ Sbjct: 117 AELDKCTLADLIEHNSPLYKLL 138 >gi|220929352|ref|YP_002506261.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium cellulolyticum H10] gi|219999680|gb|ACL76281.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulolyticum H10] Length = 148 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A H ++ + IAE +SE +L ++ L K+G+V+++RG Sbjct: 1 MKVSTKGRYGLRAIVDLAAHESEGQVSLKSIAERQNLSENYLEQLFSSLKKSGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L R AD++T+ D++++ E + +C +C C V K + Sbjct: 61 AQGGYLLARTADKMTVGDILRSLEGTLCPVDCIDPDVPSNCDRADECVTVDVWAKIRDKV 120 Query: 119 FDVLTQYSIECLVRN 133 +V+ ++ LV Sbjct: 121 NEVVDSITLADLVSE 135 >gi|121595468|ref|YP_987364.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|120607548|gb|ABM43288.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] Length = 166 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA +I + +V+ TE F + ECF + C + C L +VL A A+ Sbjct: 61 GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120 Query: 119 FDVLTQYSIECLV 131 VL +++ LV Sbjct: 121 LAVLDSFTVADLV 133 >gi|300721495|ref|YP_003710770.1| hypothetical protein XNC1_0462 [Xenorhabdus nematophila ATCC 19061] gi|297627987|emb|CBJ88536.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 139 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSHLGLVNAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA +I I DVV++ E + C A C + +C L SVL +A+ F Sbjct: 61 KNGGISLGKPAREIRIGDVVRSLE-PLALVNCSA-----CQITSACRLKSVLNQAVENFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L ++++ +V++ S + ++ Sbjct: 115 EELDKHTLADMVKDNSPLYQLL 136 >gi|154498777|ref|ZP_02037155.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC 29799] gi|150272167|gb|EDM99371.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC 29799] Length = 144 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI D + +AE IS+ +L +I+ L + G+V +VRG Sbjct: 1 MKISTKGRYALRLMLDLAIQPGDSAVPLRDVAERQEISDKYLEQIVTQLARGGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ++ T+ ++++ E + C + C C V ++ +A Sbjct: 61 AGGGYLLTRTPEEYTVGEILRQLEGNLAPVSCVSGGSC-CGRADRCVTLEVWQQIQDAVD 119 Query: 120 DVLTQYSIECLVRNRSS 136 V+ ++ LV+ Sbjct: 120 GVVDNITLADLVKRYHE 136 >gi|187933794|ref|YP_001885366.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B] gi|188588800|ref|YP_001920513.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43] gi|251778728|ref|ZP_04821648.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187721947|gb|ACD23168.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B] gi|188499081|gb|ACD52217.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43] gi|243083043|gb|EES48933.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 147 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A + P I I++ +SE +L ++ PL KA I+ ++RG Sbjct: 1 MKLSTKGRYGVRAMVDLAFNYGGPPTSIKTISKRQNLSEYYLEQLFSPLRKANIIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG LC+P +IT+ D++ E +A+C ++C V SC + +K ++ Sbjct: 61 AQGGYVLCKPPSEITVGDIMHVLEGPVEIADCIDG--VECSNVDSCATKLLWQKIKDSID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 DV+ +++ ++ + + Sbjct: 119 DVMNSITLKDIIDDYEGAR 137 >gi|78355694|ref|YP_387143.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218099|gb|ABB37448.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 146 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R+ YG R+L+ A+H +D P I +IA+ IS +L K+++ L AG + + Sbjct: 1 MKLTTRSRYGTRMLLDIAMHTHGDDQPVSIKEIADRQGISMKYLEKLIRVLKGAGYISSR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L RP + I + DVV A EE+ EC CP + C ++ +A A Sbjct: 61 LGSKGGYMLARPPESILLGDVVFALEETVPTFECVDPEPC-CPRMDYCLTRTIWNEAAKA 119 Query: 118 FFDVLTQYSIECLVRNRS 135 ++ L +++ L+ + Sbjct: 120 MYEKLNSFTLADLINDAE 137 >gi|107028973|ref|YP_626068.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689869|ref|YP_835492.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105898137|gb|ABF81095.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia AU 1054] gi|116647958|gb|ABK08599.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia HI2424] Length = 171 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + Q+T+ +VV+ATE F + CF++ ++ C + C L VL A +A Sbjct: 61 NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGVESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L ++++ L S + + Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145 >gi|284006631|emb|CBA71892.1| transcriptional regulator [Arsenophonus nasoniae] Length = 140 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D I+++ +S + KI+ L + G+V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPKDKMTNITEVTNVYGVSRNHMVKIINQLSRVGLVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PADQI I +VV+ E + C + + C + +C L +L +A++ F Sbjct: 61 KNGGIYLGKPADQIRIGEVVRLLE-PLALVNCGSDY---CHITSACRLKQILNQAIDHFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +Y++ L++N + K+ Sbjct: 117 NELDKYTLADLIKNNEPLYKLL 138 >gi|99082112|ref|YP_614266.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040] gi|99038392|gb|ABF65004.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040] Length = 154 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 79/142 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +R+LMYCA++ S+IA C ISE L +++ L + G ++T RGR Sbjct: 1 MRITKRTNIAVRLLMYCALNEGRLVTKSEIAARCNISENHLAQVVNQLSQLGFLKTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R A I I DV + E + ECFA CPLV +C L L +A AF+ Sbjct: 61 NGGLALGRAAADICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALTRAGEAFYG 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L S+E L + +++I + Sbjct: 121 ALDGISLESLTCDNIDLQRILS 142 >gi|323526163|ref|YP_004228316.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323383165|gb|ADX55256.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1001] Length = 166 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I+EA IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISEAYGISKNHLMKVVQRLSELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ ++V+ATE F + C C + C L +VL A +A Sbjct: 61 NGGLRLAERSRTLTVGEIVRATENDFALVACLPDQDGQRRPCVITPQCRLRNVLEAARHA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++IE + + + + Sbjct: 121 FLAELDRHTIEEVSGPQGPLAALLG 145 >gi|75676837|ref|YP_319258.1| hypothetical protein Nwi_2653 [Nitrobacter winogradskyi Nb-255] gi|74421707|gb|ABA05906.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter winogradskyi Nb-255] Length = 142 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT DY +R+LMY A H D I + A IS L K+ L +AG ++ VRGR Sbjct: 1 MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++I + DV+ ATE F + ECF+S+ CP+ SC L + LR+ALNAF Sbjct: 61 SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 119 Query: 121 VLTQYSIECLV 131 L +Y++ L+ Sbjct: 120 TLDRYTLADLI 130 >gi|209884294|ref|YP_002288151.1| putative transcriptional regulator [Oligotropha carboxidovorans OM5] gi|209872490|gb|ACI92286.1| putative transcriptional regulator [Oligotropha carboxidovorans OM5] Length = 149 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 3/146 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+LMY A ND I + AEA IS L K+ L +AG ++ RGR Sbjct: 1 MRLTNFSDYALRILMYAAAQNDRLITIEETAEAYGISRAHLMKVANQLTRAGYLKATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + D+I + DV++ATE F + EC ++ + C + C L L +AL AF + Sbjct: 61 SGGLALAKRPDRIRLSDVLRATEPDFSLVECLTTNNL-CVISPRCRLRGALNEALAAFLE 119 Query: 121 VLTQYSIECLVRNRSS--IKKIFNAG 144 L Y+++ L+ ++ + AG Sbjct: 120 TLDGYTLDDLILKPKDFGVRPVATAG 145 >gi|114331398|ref|YP_747620.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas eutropha C91] gi|114308412|gb|ABI59655.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha C91] Length = 154 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L+Y + + + I++I++ IS + KI+ L + G +ET+RG+ Sbjct: 1 MKLTNYSDYALRILIYLGLKREKLSTITEISDCYRISRNHVVKIVHHLGQLGYLETLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R + I I +V++ TE S + ECF+ C + SC L S++ +AL AF Sbjct: 61 HGGIRLARAPEMINIGEVMRHTETSMDLVECFSDQNA-CIICDSCVLRSIIAEALAAFMT 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L+ + +KK Sbjct: 120 VLDSYTLADLMVPKRQLKKQLQ 141 >gi|239908516|ref|YP_002955258.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239798383|dbj|BAH77372.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 148 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A+H + P RI IA +S +L K+++ L +AG V + RG Sbjct: 1 MKLTTRSRYGTRMILDMALHGQNGPVRIKDIAARQGVSVKYLEKLVRDLKEAGFVRSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L +P D I++ D+V+A E + EC CP C V +A A Sbjct: 61 PRGGHELDKPLDAISVGDIVRALEGDLSLVEC-GDETGPCPRQADCLTRGVWMEAARAMH 119 Query: 120 DVLTQYSIECLVR 132 + L ++ LV Sbjct: 120 EKLDSITLADLVA 132 >gi|182678939|ref|YP_001833085.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634822|gb|ACB95596.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 150 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 5/147 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK-AGIVETVRG 59 M LT TDY +R L++ +H + I +IA+A ISE L K++Q L + G +ET RG Sbjct: 1 MRLTLHTDYALRTLIFLGLHQERRVSIHEIADAYGISENHLMKVIQKLGRPDGFIETTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA 117 R GG+RL R D+I + DVV+ TEE + CF A C L G CGL S+L +AL A Sbjct: 61 RGGGLRLARAPDKIRLDDVVRYTEEDMAIVACFQQAKDHEACVLTGYCGLQSILGEALAA 120 Query: 118 FFDVLTQYSIECLVR--NRSSIKKIFN 142 F VL +Y++ L+ +R+ I ++ Sbjct: 121 FLAVLQRYTLADLLSSPDRAQIMRLLT 147 >gi|320539671|ref|ZP_08039335.1| putative DNA-binding transcriptional regulator [Serratia symbiotica str. Tucson] gi|320030283|gb|EFW12298.1| putative DNA-binding transcriptional regulator [Serratia symbiotica str. Tucson] Length = 141 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + D ISQ+ E +S + KI+ L + G V +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISQVTEVYGVSRNHMVKIINQLSRVGFVTAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +P + I + DVV+A E + C + C + +C L VL + + F Sbjct: 61 KNGGIRLSKPGETIRLGDVVRALE-PLSLVNCHSDF---CHISPACRLNQVLHQGVQNFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L +++ +V S + K+ Sbjct: 117 EELNNHTLADMVEGNSLLYKLL 138 >gi|188491831|ref|ZP_02999101.1| transcriptional repressor NsrR [Escherichia coli 53638] gi|188487030|gb|EDU62133.1| transcriptional repressor NsrR [Escherichia coli 53638] Length = 141 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 61 KNGGIRLGKSASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138 >gi|330003373|ref|ZP_08304594.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3] gi|328537001|gb|EGF63292.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3] Length = 156 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG+ Sbjct: 17 QLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRGK 76 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA QI + DVV+ E + C + C + +C L L +A +F Sbjct: 77 NGGIRLGKPAGQIRVGDVVRDLE-PLSLVNCSSEF---CHITPACRLKQALAEAAQSFLK 132 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 133 ELDNYTLADLVEKNQPLYKLL 153 >gi|304316708|ref|YP_003851853.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778210|gb|ADL68769.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 149 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A++ + P + IAE +SE +L +++ L KA +V+++RG Sbjct: 1 MKLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E S ++C +C G C V+ K +A Sbjct: 61 AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDMPFECSRSGGCPTKLVMEKIRDAI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 V+ +++ +V + + Sbjct: 121 NKVIDSITLQDMVDDYKKM 139 >gi|52842742|ref|YP_096541.1| hypothetical protein lpg2534 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629853|gb|AAU28594.1| hypothetical protein lpg2534 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 143 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + +C L SVL +A AF Sbjct: 60 NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 +L QY++ ++ N S + + Sbjct: 120 ILEQYTLADVLHNPSELSALL 140 >gi|212632981|ref|YP_002309506.1| hypothetical protein swp_0072 [Shewanella piezotolerans WP3] gi|212554465|gb|ACJ26919.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 149 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+H + + RIS+I + +S + K++ L K G ++TVR Sbjct: 1 MQLTRYTDFGLRTLMYLALHPERESLFRISEITDVFDLSANHISKVVHHLGKLGYLKTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L PA +I + DVV+A E S +C K C +C L VL +A+NA+ Sbjct: 61 GKSGGFKLAMPASEINVGDVVRALENSLSSIDCS---KPYCLFTPACKLKGVLAEAVNAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL Y++E +V N+ +K + Sbjct: 118 LAVLDGYTLEMIVTNKKELKSLL 140 >gi|85860337|ref|YP_462539.1| rrf2 family protein [Syntrophus aciditrophicus SB] gi|85723428|gb|ABC78371.1| rrf2 family protein [Syntrophus aciditrophicus SB] Length = 184 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R ++ A+H N+ P + IA+ ISE +L++++ PL AG++ + RG Sbjct: 43 MKLSTRGRYGLRFMLDLAVHYNEGPIFLKDIAQRQGISEKYLWQLIHPLKTAGLINSTRG 102 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + + IT+ D+++ E + +C + I C +C +V ++A Sbjct: 103 AHGGYQLAKNPEDITLKDIMQVVEGPLCLVDCVDNASI-CERASTCITRNVWQEATRVIL 161 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L ++E +V+ ++ +K Sbjct: 162 KTLESLTLETMVKRQTEKEK 181 >gi|255283408|ref|ZP_05347963.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] gi|255266056|gb|EET59261.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella formatexigens DSM 14469] Length = 152 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A++ + IS +A ISE +L ++ L KAG++ + RG Sbjct: 1 MKLSTKGRYGLRALIDLAVYCGEEAVPISSVAARQGISESYLEQLFAKLRKAGLIISERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 +GG RL +PA++I++ D+++A E + EC + C C V ++ + Sbjct: 61 AQGGYRLAKPAEEISVGDILRALEGNLDAVECPGLKEEAGCENADFCVTKYVWQRINESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + + + ++ LVR + Sbjct: 121 TEAVDEIRLDQLVRESREAQD 141 >gi|317055144|ref|YP_004103611.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315447413|gb|ADU20977.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 144 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++ A H +D I IAE IS+ +L +I+ L ++G V +VRG Sbjct: 1 MKISTKGRYALRLMTDLAEHKDDGYIPIKVIAERQNISDKYLEQIISILSRSGYVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P ++ T+ +++ TE S C + + CP +C + K +A Sbjct: 61 AGGGYTLAYPPEKYTVGMILRLTEGSLAPVACLETDENLCPRAKACPTLFIWEKLYSAIN 120 Query: 120 DVLTQYSIECLVRN 133 V+ +I +V Sbjct: 121 YVVDGITIADIVAR 134 >gi|225018254|ref|ZP_03707446.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum DSM 5476] gi|224948951|gb|EEG30160.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum DSM 5476] Length = 145 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R++ A H N + +IA+ IS+ +L +I+ L AG+V++VRG Sbjct: 1 MKISTKGRYGLRLMFELAYHYNKGLVPLKEIAKRQEISDKYLEQIIMRLNHAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L P ++ T+ +V+ E S V EC ++ ++C + SC + K A Sbjct: 61 AQGGYMLAAPPEETTVEEVLTVLEGSLCVVECIGANGVECKNINSCPTYGIWSKINQAIQ 120 Query: 120 DVLTQYSIECLVRN 133 V++ ++ +V + Sbjct: 121 QVVSNITLADMVED 134 >gi|304311681|ref|YP_003811279.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] gi|301797414|emb|CBL45634.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] Length = 166 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-----------YPNRISQIAEACCISELFLFKILQPLV 49 M +T TDY +RVLMY A+ I +IA A IS L K++ L Sbjct: 1 MRITTFTDYTLRVLMYLALKEKPNEPSESRESVALATIPEIAAAYGISSNHLMKVVHHLA 60 Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 + G +E++RG+ GG+RL DQI + V++A+E + + EC C + C L + Sbjct: 61 RTGTIESIRGKGGGIRLAAAPDQIRLGQVIRASESNGPIVECLGEEPGVCKIAPVCRLAN 120 Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 +L A A + L QY++ L R ++ + Sbjct: 121 ILGTAFEALYASLDQYTLADLTRQSKPLQGLL 152 >gi|206560284|ref|YP_002231048.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036325|emb|CAR52221.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 172 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + Q+T+ VV+ATE F + CF+ + C + C L VL A +A Sbjct: 61 NGGLRLFADSLQLTVGQVVRATENDFALVGCFSPDDSESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L S + + Sbjct: 121 FFAELDRHTIGELAEPASPLVALLG 145 >gi|256823249|ref|YP_003147212.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796788|gb|ACV27444.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis DSM 16069] Length = 148 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL++ A+ D + I +I+++ IS L K++ L K G +ETVRG+ Sbjct: 1 MHITRYTDYSLRVLLFLALEKDRLSTIQEISDSYNISSNHLMKVVHALNKKGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I I +V+ E + ECF+ C + CGL +VL +AL F Sbjct: 61 NGGMRLRMDPEDIRIGVLVREMEPDMSLVECFSPDN-KCVITPVCGLKAVLGEALKNFLA 119 Query: 121 VLTQYSIECLVRN--RSSIKKIF 141 L +Y++ ++ + + ++ Sbjct: 120 TLDKYTLADMLPQEYKPQLARLL 142 >gi|153855264|ref|ZP_01996430.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814] gi|149752263|gb|EDM62194.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814] Length = 154 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A +++ P I +A ISE +L +++ L KAG+V+++RG Sbjct: 1 MKLSTKGRYGLRAMIDLARYSEKEPVSIGSVAARQEISERYLEQLVALLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALN 116 GG L + +I++ D+++A E S +C A C C V +K + Sbjct: 61 ASGGYVLAKKPSEISVGDILRALEGSLEPVKCAAFDTTTGEGCMASDGCVTKYVWQKIND 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + D + Q ++ L++ SI Sbjct: 121 SINDTVNQIMLDELIQESKSINP 143 >gi|159044209|ref|YP_001533003.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911969|gb|ABV93402.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 150 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 82/142 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LMYCA+H R S++A+A SE L +++ L + G +ETVRGR Sbjct: 1 MRLTTRTNLAMRTLMYCAVHTGRNIRTSEVAKATNASENHLGQVINMLGQTGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A IT+ V + E AECF + + CPL+ C L L +AL AF+ Sbjct: 61 GGGIRLARNAQDITVGGVFRVFEAGTPFAECFDAKECTCPLISVCRLKGALGEALMAFYR 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++E LV++ + +K + Sbjct: 121 SLDAITLESLVKDNTGLKDLLG 142 >gi|331002201|ref|ZP_08325720.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411295|gb|EGG90711.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon 107 str. F0167] Length = 154 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 81/139 (58%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R Y +++++ AI+++ P +I+Q++++ ISE +L +I+ L KA +V+++RG Sbjct: 1 MKISTRGRYALKMMVEFAINSNSPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L +P ++ T+ ++++ TE S +C C C ++ +K +A + Sbjct: 61 QGGYLLVKPVEEYTVGEILRLTEGSLSPVDCL-DGNGSCVHSDFCVTQNLFKKVEDAINN 119 Query: 121 VLTQYSIECLVRNRSSIKK 139 V+ S++ LV + I+K Sbjct: 120 VVDNISLQDLVDDELDIRK 138 >gi|197287183|ref|YP_002153055.1| transcriptional repressor NsrR [Proteus mirabilis HI4320] gi|226737673|sp|B4F272|NSRR_PROMH RecName: Full=HTH-type transcriptional repressor nsrR gi|194684670|emb|CAR46611.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 142 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ + +S + KI+ L G VE +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I + +VV+A E + C A C + +C L VL +A+ F Sbjct: 61 KNGGIRLGKPAADIIVGEVVRALE-PLSLVNCSAEF---CHITPACRLKLVLNQAIEQFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L ++++ LV N S + K+ Sbjct: 117 KELDRHTLAELVENNSPLYKLL 138 >gi|302874700|ref|YP_003843333.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307690687|ref|ZP_07633133.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302577557|gb|ADL51569.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 140 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+H P I I++ ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMFDLAVHYGSEPISIKSISDRQGISENYLEQLFSTLRKAELIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +IT+ D+ E V++C + C +GSCG + K N+F Sbjct: 61 AQGGYMLNKLPAEITVADIFDVLEGPIEVSDCIDENC--CSKIGSCGTRGLWIKIKNSFD 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V +++ +V + + K Sbjct: 119 EVTQSVTLQDMVDDYNKNK 137 >gi|188584942|ref|YP_001916487.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349629|gb|ACB83899.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 155 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + +YG+R L++ A + N+ P + +I++ IS +L +I L + +V +VRG Sbjct: 6 KLSTKGEYGVRALVHLACNYNEGPISLREISKIEDISYQYLEQIFLDLRRNSLVLSVRGA 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 +GG L +IT+ DV++A E C A S +C +C V + + Sbjct: 66 KGGYTLASHPKEITVGDVIRAVEGPIAPVSCVAKSTNSENTECDRSSTCAPRGVWLELRD 125 Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140 +VL +++++ L + I+K+ Sbjct: 126 RISEVLDEFTLQDLAVTDNDIEKL 149 >gi|170750041|ref|YP_001756301.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656563|gb|ACB25618.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium radiotolerans JCM 2831] Length = 163 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y +H + I+ IA A ISE L K++ L + G++ T+RGR Sbjct: 1 MRLTRYTDYALRTLIYVGLHEPEQSSIAAIARAYGISENHLTKVVHQLGRLGLIRTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P +I + VV+ TE+ + ECF C + C L VL +AL AF Sbjct: 61 GGGLRLAMPPGEIVVGAVVRQTEDDLALVECFGGGA--CAITAPCRLRRVLGEALAAFLA 118 Query: 121 VLTQYSIECLV 131 VL +Y++ L+ Sbjct: 119 VLDRYTLADLL 129 >gi|78485131|ref|YP_391056.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363417|gb|ABB41382.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira crunogena XCL-2] Length = 156 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TDY +RVLMY A+ D +I I+E I + L K++ L K +++TVR Sbjct: 12 MQLTKYTDYALRVLMYLAMQDEPDTKVQIKTISEKFGIPKNHLMKVVHQLGKENMIKTVR 71 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+ LC+P I + V++ E + C K C + C L L KA+ AF Sbjct: 72 GKHGGIMLCQPPSDIIVGHVIRKFEMTLSPVNC---EKPLCQIQEICLLKPALFKAMEAF 128 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 L QY++ + +N+ +K Sbjct: 129 LSTLDQYTLADITKNQPCLKDCL 151 >gi|323704140|ref|ZP_08115719.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536206|gb|EGB25978.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium xylanolyticum LX-11] Length = 149 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A++ + P + IAE +SE +L +++ L KA +V+++RG Sbjct: 1 MRLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 +GG L P D+IT+ DV++ E S ++C +C G C VL K +A Sbjct: 61 AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDIPFECSRSGGCPTKVVLEKIRDAI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 V+ +++ +V + + Sbjct: 121 NKVIDSITLQDMVDDYKKM 139 >gi|222111682|ref|YP_002553946.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY] gi|221731126|gb|ACM33946.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus TPSY] Length = 166 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL +PA +I + +V+ TE F + ECF + C + C L +VL A A+ Sbjct: 61 GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120 Query: 119 FDVLTQYSIECLV 131 VL ++ LV Sbjct: 121 LAVLDSLTVADLV 133 >gi|226322609|ref|ZP_03798127.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758] gi|225208946|gb|EEG91300.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758] Length = 147 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R + A + + P IS I+ ISE +L +++ L KAG+V+++RG Sbjct: 1 MKISTKGRYGLRAFIDLACYGAEEPVSISSISARQEISERYLEQLMAKLKKAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG RL + A ++++ DV++A E A C A H D C + GSC V +K + Sbjct: 61 AGGGYRLAKDAAEVSVGDVLRALEGDLEPATCAALHSEDSCEIQGSCITKYVWKKVNESM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + I LV +KK Sbjct: 121 AQTVDSIMINTLVEMNKEVKK 141 >gi|254492393|ref|ZP_05105565.1| Transcriptional regulator superfamily [Methylophaga thiooxidans DMS010] gi|224462285|gb|EEF78562.1| Transcriptional regulator superfamily [Methylophaga thiooxydans DMS010] Length = 143 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +DY +R+L+Y AIH D P + AE +S L K+ Q LV+ +V + RG Sbjct: 1 MQLTTHSDYALRLLIYLAIHPGDKPATVKDAAERYGVSTNHLAKVAQRLVQEKLVISQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L + I I +++ TE + + ECF CP+ C L S LRKA AFF Sbjct: 61 RGGGLKLATTPESINIGQLIRKTE-NLELLECFGDDCA-CPIESVCILFSALRKAQKAFF 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 DVL Y++ +V+N+ + + N Sbjct: 119 DVLDGYTLADVVKNKHRLMQSLN 141 >gi|328950902|ref|YP_004368237.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus hydrothermalis DSM 14884] gi|328451226|gb|AEB12127.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus hydrothermalis DSM 14884] Length = 155 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + P + +AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRGPGPVPLKDVAEAQEISQHYLEQIAAALRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL R + IT L+VV+A E S C + C VG C ++ ++ A + Sbjct: 61 KGGYRLARSPENITALEVVEAMEGSLAPVSCLEDPE-SCWQVGHCSTENLWKRVDAAMRE 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL + ++ L+ R I+ Sbjct: 120 VLGKTTLRDLIEERRLIE 137 >gi|300715046|ref|YP_003739849.1| transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661] gi|299060882|emb|CAX57989.1| Transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661] Length = 145 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ EA +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDYGLRALIYLAALPAGQMASITEVTEAYGVSRNHMVKIINQLSRAGYVAAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +I I VV+ E + C C + +C L L A+ +F Sbjct: 61 KNGGIRLGKPASEIVIGQVVREME-PLQLVNC-----QPCLISPACRLKKALYDAVQSFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ L+ + + K+ Sbjct: 115 AVLDGYTLADLLEDNHPLYKLL 136 >gi|54295371|ref|YP_127786.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens] gi|53755203|emb|CAH16696.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens] Length = 143 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + C L SVL +A AF Sbjct: 60 HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 +L QY++ ++ N S + + Sbjct: 120 ILEQYTLADVLHNPSELSALL 140 >gi|212709958|ref|ZP_03318086.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM 30120] gi|212687367|gb|EEB46895.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM 30120] Length = 142 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + I+Q+ E +S + KI+ L G V+ RG+ Sbjct: 4 QLTSFTDYGLRALIYLAALEKGQMTSITQVTEVYGVSRNHMVKIINQLSHLGYVKATRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA+ I I DVV+A E + C C + +C L L+KA+ F Sbjct: 64 NGGIALGQPAESIRIGDVVRALE-PLTLVNCSGEF---CHITPACRLKGALQKAIQQFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L QY++ +V++ S + ++ Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140 >gi|110800338|ref|YP_696471.1| rrf2 family protein [Clostridium perfringens ATCC 13124] gi|169343592|ref|ZP_02864591.1| rrf2 family protein [Clostridium perfringens C str. JGS1495] gi|182625647|ref|ZP_02953416.1| rrf2 family protein [Clostridium perfringens D str. JGS1721] gi|110674985|gb|ABG83972.1| rrf2 family protein [Clostridium perfringens ATCC 13124] gi|169298152|gb|EDS80242.1| rrf2 family protein [Clostridium perfringens C str. JGS1495] gi|177909049|gb|EDT71524.1| rrf2 family protein [Clostridium perfringens D str. JGS1721] Length = 153 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH P I I++ ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+ D+++ E +++C + C V C + +K + Sbjct: 61 AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +V +++ +V + ++K+ Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138 >gi|291559054|emb|CBL37854.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SSC/2] Length = 152 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A++ D P IS IAE IS +L ++L L KAGI++++RG Sbjct: 1 MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117 +GG L + I+ D+++ E +C F C C +V ++ ++ Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAAFTGDTSTCSGTKFCVTKTVWQRINDS 120 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 + +++ L+ I Sbjct: 121 VQQAVDSITLQELMEESIEIH 141 >gi|54298536|ref|YP_124905.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris] gi|148360004|ref|YP_001251211.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby] gi|296108175|ref|YP_003619876.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99 Alcoy] gi|53752321|emb|CAH13753.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris] gi|148281777|gb|ABQ55865.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby] gi|295650077|gb|ADG25924.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99 Alcoy] Length = 143 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + +C L SVL +A AF Sbjct: 60 NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 +L QY++ ++ N S + + Sbjct: 120 ILEQYTLADVLHNPSELSVLL 140 >gi|126698875|ref|YP_001087772.1| transcriptional regulator [Clostridium difficile 630] gi|254974823|ref|ZP_05271295.1| transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092211|ref|ZP_05321689.1| transcriptional regulator [Clostridium difficile CIP 107932] gi|255100296|ref|ZP_05329273.1| transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306235|ref|ZP_05350407.1| transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313950|ref|ZP_05355533.1| transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516630|ref|ZP_05384306.1| transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649729|ref|ZP_05396631.1| transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655290|ref|ZP_05400699.1| transcriptional regulator [Clostridium difficile QCD-23m63] gi|260682885|ref|YP_003214170.1| RRF2 family transcriptional regulator [Clostridium difficile CD196] gi|260686483|ref|YP_003217616.1| RRF2 family transcriptional regulator [Clostridium difficile R20291] gi|296451274|ref|ZP_06893014.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08] gi|296880374|ref|ZP_06904337.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07] gi|306519839|ref|ZP_07406186.1| RRF2-family transcriptional regulator [Clostridium difficile QCD-32g58] gi|115250312|emb|CAJ68134.1| Transcriptional regulator, Rrf2 family (Transcriptional regulator of cysteine biosynthesis) [Clostridium difficile] gi|260209048|emb|CBA62167.1| RRF2-family transcriptional regulator [Clostridium difficile CD196] gi|260212499|emb|CBE03426.1| RRF2-family transcriptional regulator [Clostridium difficile R20291] gi|296259880|gb|EFH06735.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08] gi|296428615|gb|EFH14499.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07] Length = 148 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A++ D P + IA+ IS+ +L +I L K+G+V++VRG Sbjct: 1 MKLSTKGRYGLKAMFELALNQDNGPVSLKFIAKKQKISDQYLEQIFSSLKKSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + A+ IT+ D++ E +++C + C C V K Sbjct: 61 AQGGYLLSKNAEDITVGDILVVLEGPVALSDCVLDEDV-CENSNMCVTKIVWEKMKKGIE 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 DV+ +++ ++ + + K Sbjct: 120 DVIDSITLKDMINDYNKNK 138 >gi|188535079|ref|YP_001908876.1| transcriptional repressor NsrR [Erwinia tasmaniensis Et1/99] gi|188030121|emb|CAO98007.1| Putative negative regulator [Erwinia tasmaniensis Et1/99] Length = 141 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V +RG Sbjct: 1 MQLTSFTDYGLRALIYLASLPAGRMTSISEVTEIYGVSRHHMVKIINQLSRAGYVSALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA +I I VV+ E + C + C + +C L + L +A+ +F Sbjct: 61 KNGGILLGKPAAEIVIGQVVRTLE-PLQLVNCSSEF---CHITAACRLKTALHEAVQSFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ LV + + KI Sbjct: 117 RELDQYTLADLVEDNHPLYKIL 138 >gi|291327130|ref|ZP_06127096.2| transcriptional repressor NsrR [Providencia rettgeri DSM 1131] gi|291311664|gb|EFE52117.1| transcriptional repressor NsrR [Providencia rettgeri DSM 1131] Length = 142 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + I+++ E +S + KI+ L G ++ RG+ Sbjct: 4 QLTSFTDYGLRALIYLASLGEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYIKATRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA+ I I DVV+A E + C C + +C L VL +A+ F Sbjct: 64 NGGITLGQPAESIRIGDVVRALE-PLTLVNCSGEF---CHITPACRLKGVLHQAIQQFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L QY++ +V++ S + ++ Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140 >gi|225026850|ref|ZP_03716042.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353] gi|224955857|gb|EEG37066.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353] Length = 152 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++ A+++ P R+ IA+ +S +L +I+ L KAG + ++R Sbjct: 7 MRISTKGRYALRLMLDIAMNDAEGKPVRVKDIAKRQEVSGKYLEQIVSVLTKAGYLRSIR 66 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L + D+ T+ +++ TE S C C + C + RK A Sbjct: 67 GPQGGYLLTKRPDEYTVGMILRITEGSMEPVPCLEEGSEVCERMEECITIPLWRKLSEAI 126 Query: 119 FDVLTQYSIECLVR 132 VL +++ L+ Sbjct: 127 SGVLDHTTLDDLIE 140 >gi|148260795|ref|YP_001234922.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402476|gb|ABQ31003.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum JF-5] Length = 150 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT TDYG+R L++ A+ + I++IA + IS+ L K++ L +AG+VET+RGR Sbjct: 1 MHLTMFTDYGLRTLIFLALRPERQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA I + +V++A E + C + C + G C L +V+ +A +AF Sbjct: 61 HGGMRLARPAANIGLGEVIRAMEPGLALVPCQEGGR--CAIGGCCDLQAVMNEARDAFLG 118 Query: 121 VLTQYSIECLVR--NRSSIKKI 140 V +Y++ +V N ++++ Sbjct: 119 VFDRYTLADVVSPGNPRLMRRL 140 >gi|220934620|ref|YP_002513519.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995930|gb|ACL72532.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7] Length = 143 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y A++ D +RI+ IAEA IS L K++ L G + T RG+ Sbjct: 1 MQLTRHTDYALRVLIYLAVNPDRLSRITDIAEAYDISRHHLVKVVHELAGHGHILTYRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP +I I DVV+ EE+ + C A C ++ C L VL A +AF Sbjct: 61 HGGMRLARPPAEIRIGDVVRDMEENLEIINCSA---PMCIILPDCRLKGVLNDARDAFMA 117 Query: 121 VLTQYSIECLVRNRSS 136 L + ++ LV + Sbjct: 118 TLDRVTLAELVVKKEK 133 >gi|163850401|ref|YP_001638444.1| rrf2 family transcriptional regulator [Methylobacterium extorquens PA1] gi|218528961|ref|YP_002419777.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Methylobacterium chloromethanicum CM4] gi|240137477|ref|YP_002961948.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254559655|ref|YP_003066750.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens DM4] gi|163662006|gb|ABY29373.1| transcriptional regulator, Rrf2 family [Methylobacterium extorquens PA1] gi|218521264|gb|ACK81849.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium chloromethanicum CM4] gi|240007445|gb|ACS38671.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254266933|emb|CAX22732.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens DM4] Length = 157 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + + I++IA A ISE L K++ L + G+++T+RGR Sbjct: 1 MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + VV+ TE+ + ECF++ C + C L L +AL AF Sbjct: 61 GGGLRLAKPPAEIVVGAVVRETEDDLALVECFSAG--SCAITAPCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142 VL +Y++ L+ I ++ Sbjct: 119 VLDRYTLADLLGGAEGDEIARLLG 142 >gi|172060807|ref|YP_001808459.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993324|gb|ACB64243.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MC40-6] Length = 172 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + ++T+ VV+ATE F + CF++ + C + C L VL A +A Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++ L S + + Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145 >gi|158522270|ref|YP_001530140.1| BadM/Rrf2 family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511096|gb|ABW68063.1| transcriptional regulator, BadM/Rrf2 family [Desulfococcus oleovorans Hxd3] Length = 154 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ YG R+++ A++ + P R+S++++ IS +L K+++ + +AG+VE+ RG Sbjct: 1 MRLTTKSRYGTRLILDLALYGKEEPVRLSEVSKRQGISLKYLEKLIRRMRRAGLVESSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117 GG +L + + I++ D+V+ E + +C + C G C + + A Sbjct: 61 PYGGYKLAKAPEDISVGDIVRVMEGGTSITDCSERESVCGVCNRAGECLSRHIWVETSKA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 F+ L ++ I L+ N ++I K Sbjct: 121 MFNALDEFRIGDLIENSTTILK 142 >gi|209519545|ref|ZP_03268338.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] gi|209500024|gb|EEA00087.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] Length = 176 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 3/147 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYALRVLLYLAVRGEGLSTIHDISQAYGISKNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ DVV+ATE F + C + C + C L L+ A A Sbjct: 61 NGGLRLGAQSPALTVGDVVRATESDFALVGCLPDRQGVQRHCVITTQCRLRGALQAANQA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 F L +++I + + S + + G Sbjct: 121 FLAELDRHTIGEVAQPHSPLAALLGLG 147 >gi|114328337|ref|YP_745494.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] gi|114316511|gb|ABI62571.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] Length = 141 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ TDY IRV++Y +++ D +I++IA IS L K++Q LV AG+V +VRGR Sbjct: 1 MKFTRYTDYAIRVMIYLSVNQDRVVQIAEIARVYDISHNHLMKVVQGLVSAGLVSSVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPADQIT+ ++V+ TE+ F + EC DC C S+L +A AF Sbjct: 61 SGGLLLGRPADQITVGELVRRTEDGFHLVEC-----ADCAARPGCQAPSILAEATKAFLA 115 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ +VR++S FN Sbjct: 116 VLDRYTLSDVVRDKSIAHAAFN 137 >gi|167587014|ref|ZP_02379402.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia ubonensis Bu] Length = 165 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118 GG+RL + ++T+ VV+ TE F + CFA + C + C L VL A +AF Sbjct: 61 NGGLRLFPHSTRLTVGQVVRETENDFALVGCFAGGESQRACVIEPHCRLKGVLAAARDAF 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 F L ++++ L + S + + Sbjct: 121 FAELDRHTLGELAQPASPLAALLG 144 >gi|238922731|ref|YP_002936244.1| hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656] gi|238874403|gb|ACR74110.1| Hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656] gi|291526518|emb|CBK92105.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale DSM 17629] gi|291527007|emb|CBK92593.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale M104/1] Length = 144 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++M A +N P + +A+ IS+ +L +I+ L KAG V +VRG Sbjct: 1 MKISTKGRYALRLMMDLAENNTGSPISLKDVAKRQDISDKYLEQIISILNKAGYVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L T+ +++ TE S C +I C C + V +K +A Sbjct: 61 AQGGYMLKMEPQNYTVGMILRQTEGSLAPVACIEDDEIVCDRQQQCVTSIVYKKINDAIS 120 Query: 120 DVLTQYSIECLVRNRSS 136 V+ +++ LV ++ Sbjct: 121 GVVDNITLQDLVDWQNE 137 >gi|282600062|ref|ZP_05972854.2| transcriptional repressor NsrR [Providencia rustigianii DSM 4541] gi|282566903|gb|EFB72438.1| transcriptional repressor NsrR [Providencia rustigianii DSM 4541] Length = 142 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + I+++ + +S + KI+ L G ++ VRG+ Sbjct: 4 QLTSFTDYGLRALIYLAALEKGKMTSITEVTDVYGVSRNHMVKIINQLSHLGYIKAVRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L +PA+ I I DVV+A E + C C + +C L L KA+ F Sbjct: 64 NGGISLGQPAESIRIGDVVRALE-PLTLVNCSGEF---CHITPACRLKGALNKAIQQFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L QY++ +V++ S + ++ Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140 >gi|239946889|ref|ZP_04698642.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of Ixodes scapularis] gi|239921165|gb|EER21189.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of Ixodes scapularis] Length = 142 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 66/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERICSVKEISEYYNISLNHLVKVIHRLAQLGYINSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + + D+++ E + + ECF + C + SC +++A AF Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120 Query: 121 VLTQYSIEC 129 L Y++E Sbjct: 121 TLNNYTLED 129 >gi|254510320|ref|ZP_05122387.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11] gi|221534031|gb|EEE37019.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11] Length = 148 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 78/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ +RVLMYCA H D ++IAE C ISE L +++ L + + T RGR Sbjct: 1 MRITKRTNIAVRVLMYCAAHPDRLVTKAEIAEVCNISENHLAQVINQLSQLDYLSTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R ADQI I V + E + +AECFA CPL +C L L+ A F+ Sbjct: 61 NGGTVLARAADQIRIGSVFRHVEGALPIAECFADADNTCPLTDACRLRLALQDAAEVFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L +++ L+ + ++ +I Sbjct: 121 SLDDITLDALICDNDNLLRILQ 142 >gi|126176517|ref|YP_001052666.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS155] gi|152998594|ref|YP_001364275.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS185] gi|160873169|ref|YP_001552485.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS195] gi|217971259|ref|YP_002356010.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS223] gi|304412444|ref|ZP_07394051.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|307305788|ref|ZP_07585534.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] gi|125999722|gb|ABN63797.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS155] gi|151363212|gb|ABS06212.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS185] gi|160858691|gb|ABX47225.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS195] gi|217496394|gb|ACK44587.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS223] gi|304349279|gb|EFM13690.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|306911281|gb|EFN41707.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] gi|315265394|gb|ADT92247.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS678] Length = 151 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I + +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKMGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +V+ E S +C K C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPASEINLGQLVRVLENSLAPIDCS---KPYCRFTPACKLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +VL QY++ +V NR + + Sbjct: 118 LNVLDQYTLLDIVSNRDELLALL 140 >gi|94498334|ref|ZP_01304893.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58] gi|94422214|gb|EAT07256.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58] Length = 141 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL+Y I+ IA A IS+ L K++ LV AG +E+VRGR Sbjct: 1 MRLTRYTDYAMRVLLYLGRQPGELASIAVIARAFAISQNHLMKVVNDLVNAGYLESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP +I + +V+ TE+ F + C A C + +CGLTSVL +AL AF Sbjct: 61 NGGIRLARPPHEINVGALVRQTEDDFDLVGCGA-----CVIAPACGLTSVLDEALLAFLK 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL YS+ ++ + + Sbjct: 116 VLDGYSLADVLARKGDFSHLL 136 >gi|220934658|ref|YP_002513557.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. HL-EbGR7] gi|219995968|gb|ACL72570.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. HL-EbGR7] Length = 158 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + +M AIH+ P ++ I++ IS +L ++ L K G+VE VRG Sbjct: 1 MKLSTKGRYAVTAMMDLAIHDRIGPVTLADISQCQGISLSYLEQLFAKLRKHGLVEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PAD+IT+ +++ A +E+ V C + DC C + + + Sbjct: 61 PGGGYRLAKPADRITVANIITAVDENVDVTRCQGNE--DCQQGDRCLTHELWKDLSQQLY 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L ++ NR ++ + Sbjct: 119 GFLDGITLAQFA-NRPEVQAV 138 >gi|307243658|ref|ZP_07525799.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis DSM 17678] gi|306492968|gb|EFM64980.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis DSM 17678] Length = 154 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG++ + A+ + + P + IA IS+ +L +I L KAG+V++VR Sbjct: 1 MKLSTKGKYGLKAMFELAVSGNENEPVPLKYIANRQEISDQYLEQIFSALKKAGLVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L +PA +IT+ D+++ E EC C SC V + A Sbjct: 61 GAQGGYFLSKPASEITVADILRVLEGDMAFTECLLDEDA-CKNFDSCSTRYVWARIKQAI 119 Query: 119 FDVLTQYSIECLVRNRSS 136 DV S++ + + +S Sbjct: 120 EDVTMSISLQDMADDYNS 137 >gi|115351837|ref|YP_773676.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170703406|ref|ZP_02894182.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|115281825|gb|ABI87342.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria AMMD] gi|170131682|gb|EDT00234.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] Length = 172 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + ++T+ VV+ATE F + CF++ + C + C L VL A +A Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++ L S + + Sbjct: 121 FFAELDGHTLGELAEPASPLATLLG 145 >gi|170692319|ref|ZP_02883482.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] gi|170142749|gb|EDT10914.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] Length = 169 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y AI + + I I++A +S+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAIRGEGLSTIQDISDAYGVSKNHLMKVVQQLSELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL ++T+ ++V+ATE F + C C + C L +VL A NA Sbjct: 61 NGGLRLAERTRKLTVGEIVRATESDFALVACLPDQNGERRPCVITPQCRLRNVLEAARNA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++I+ + + + + Sbjct: 121 FLAELDRHTIDEVAGPQGPLAALLG 145 >gi|126665836|ref|ZP_01736817.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17] gi|126629770|gb|EBA00387.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17] Length = 145 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y A D I +A+A IS+ L K++ L G +ETVRG+ Sbjct: 1 MHITRYTDYSLRVLVYLAACGDRLVTIQDVADAYDISKNHLMKVVHQLNLKGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I I +V+ TE + ECF+++ C + C L S+LR+AL AF Sbjct: 61 NGGMRLRRQPSSINIGALVRDTEPDLNLVECFSANN-QCCITPVCSLQSMLREALQAFLA 119 Query: 121 VLTQYSIECLVR 132 L Y++ +VR Sbjct: 120 TLDTYTLADVVR 131 >gi|167765593|ref|ZP_02437657.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1] gi|317498547|ref|ZP_07956841.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] gi|167712778|gb|EDS23357.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1] gi|316894240|gb|EFV16428.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] Length = 149 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A++ D P IS IAE IS +L ++L L KAGI++++RG Sbjct: 1 MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117 +GG L + I+ D+++ E +C F C C +V ++ ++ Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAAFTGDTSTCSGTKFCVTKTVWKRINDS 120 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 + +++ L+ I Sbjct: 121 VQQAVDSITLQELMEESIEIH 141 >gi|167825083|ref|ZP_02456554.1| putative transcriptional regulator [Burkholderia pseudomallei 9] gi|217420382|ref|ZP_03451887.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|226199936|ref|ZP_03795486.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] gi|217395794|gb|EEC35811.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|225927992|gb|EEH24029.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] Length = 162 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|307611397|emb|CBX01061.1| hypothetical protein LPW_27621 [Legionella pneumophila 130b] Length = 143 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYTISNNHLIKIIHNLSKMGLIKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E +F + CF K +C + C L SVL +A AF Sbjct: 60 HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 +L QY++ ++ N S + + Sbjct: 120 ILEQYTLADVLHNPSELSALL 140 >gi|53725252|ref|YP_102394.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|52428675|gb|AAU49268.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] Length = 165 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 4 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 64 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 124 ELDGATLADLV 134 >gi|187923802|ref|YP_001895444.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Burkholderia phytofirmans PsJN] gi|187714996|gb|ACD16220.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phytofirmans PsJN] Length = 166 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + I I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGGGLSTIQDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ ++V+ATE F + CF + C + C L L A NA Sbjct: 61 NGGLRLAEQTNALTVGEIVRATESDFALVGCFPDQHGERRGCVITAQCRLRGALEAARNA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++I + + + + Sbjct: 121 FLTELDRHTIGEVAQPHGPLAALLG 145 >gi|326403994|ref|YP_004284076.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050856|dbj|BAJ81194.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 150 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT TDYG+R L++ A+ D I++IA + IS+ L K++ L +AG+VET+RGR Sbjct: 1 MHLTMFTDYGLRTLIFLALRPDRQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA I + +V++A E + C + C + G C L +V+ +A +AF Sbjct: 61 HGGMRLARPAANIGLGEVIRAMEPGLALVACQEGGR--CAIGGCCDLQAVMNEARDAFLG 118 Query: 121 VLTQYSIECLV 131 V +Y++ +V Sbjct: 119 VFDRYTLADVV 129 >gi|253991548|ref|YP_003042904.1| transcriptional repressor NsrR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638426|emb|CAR67048.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782998|emb|CAQ86163.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 141 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L G+V+ VRG Sbjct: 1 MQLTSFTDYGLRALIYMAALPQSQMTSISEVTDVYGVSRNHMVKIINQLSHLGLVDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+A E + C C + +C L VL +A F Sbjct: 61 KNGGIRLGKPAKDIRIGDVVRALE-PLSLVNCSQE---SCHITSACRLKVVLNQAAEKFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L ++++ +V + + K+ Sbjct: 117 EELDKHTLADMVEDNIPLYKLL 138 >gi|67641803|ref|ZP_00440570.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|121599140|ref|YP_993712.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|167001110|ref|ZP_02266911.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|167895170|ref|ZP_02482572.1| Rrf2 family protein [Burkholderia pseudomallei 7894] gi|167919806|ref|ZP_02506897.1| Rrf2 family protein [Burkholderia pseudomallei BCC215] gi|254178664|ref|ZP_04885319.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|254199293|ref|ZP_04905659.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|254205604|ref|ZP_04911956.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|254296933|ref|ZP_04964386.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|121227950|gb|ABM50468.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|147748889|gb|EDK55963.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|147753047|gb|EDK60112.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|157807290|gb|EDO84460.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|160699703|gb|EDP89673.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|238522791|gb|EEP86233.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|243063060|gb|EES45246.1| putative transcriptional regulator [Burkholderia mallei PRL-20] Length = 162 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|170729199|ref|YP_001763225.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814546|gb|ACA89130.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC 51908] Length = 152 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L K G +ETVR Sbjct: 1 MQLTRYTDFGIRTLMYLALQPERETLFRIAEITEVFELSPNHVSKIVHHLGKLGYLETVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL PA +I I +V+ E S +C +K C +C L VL +A++A+ Sbjct: 61 GKSGGFRLGMPASEINIGQLVRVLENSLAPIDC---NKPYCLFTPACKLRGVLAEAVSAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL ++S+E +V NR + K+ Sbjct: 118 LAVLDKHSLEDVVSNRQQLLKLL 140 >gi|153852839|ref|ZP_01994276.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814] gi|149754481|gb|EDM64412.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814] Length = 144 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A + N R+ I+ I+ ++ +I+ L KAG V + RG Sbjct: 1 MKISTKGRYALRIMIDLAENANGEYIRLKDISARQGITLKYMEQIMPMLTKAGYVRSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++ T D+++ TE S C C C Sbjct: 61 NNGGYMLAKEPEEYTAGDIIRTTEGSLAPIACLDDVPNRCERQDQCSTLEFWEGLKKVID 120 Query: 120 DVLTQYSIECLVRNRSS 136 + ++ LV+N Sbjct: 121 QYVDGVTLADLVKNHEE 137 >gi|167837274|ref|ZP_02464157.1| Rrf2 family protein [Burkholderia thailandensis MSMB43] Length = 161 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 77/131 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCAANPDRLITIAELAERHAVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P +I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLAMPPARIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|153953942|ref|YP_001394707.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854556|ref|YP_002471678.1| hypothetical protein CKR_1213 [Clostridium kluyveri NBRC 12016] gi|146346823|gb|EDK33359.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568280|dbj|BAH06264.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 148 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH D P I I+E ISE +L ++ L K+ ++ ++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGDEPLSIKTISERQGISEYYLEQLFSNLRKSNLIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L R IT+ D++ E +++C + C + C + + + Sbjct: 61 SQGGYILNREPKNITVWDIMGVLEGPIEISDCVDDNNESSCDNIDCCATRLLWSRIKDGI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 +++ +++ +V + +S+K+ Sbjct: 121 DEIMKSTTLQDMVDDYNSMKQ 141 >gi|307729564|ref|YP_003906788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584099|gb|ADN57497.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1003] Length = 169 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + I I+EA +S+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGQGLSTIQDISEAYGVSKNHLMKVVQQLSELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL +T+ ++V+ATE F + C + C + C L +VL A +A Sbjct: 61 NGGLRLAERTRSLTVGEIVRATESDFALVACLPDQNGERRACVITPQCRLRNVLEAARHA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++I+ + + + + Sbjct: 121 FLAELDRHTIDEVAGPQGPLAALLG 145 >gi|166033539|ref|ZP_02236368.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC 27755] gi|166026724|gb|EDR45481.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC 27755] Length = 145 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 1/145 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A HN R+ I++ I+ ++ +I+ L K+G V++ RG Sbjct: 1 MKVSTKGRYALRIMIDLAEHNTGGYIRLKDISKRQGITLKYMEQIMPILTKSGYVKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++ T ++++A E S C C C + Sbjct: 61 NNGGYMLAKKPEEYTAGEILRAAEGSLAPVSCIEDEPNACGHYEQCRTVKFWEGLWDVII 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 + ++++ L++N I G Sbjct: 121 EYTDRFTLADLMKNEDIENPICKEG 145 >gi|301155741|emb|CBW15209.1| DNA-binding transcriptional repressor [Haemophilus parainfluenzae T3T1] Length = 151 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHAGTDPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL P DQI+I V+ A E+ V C K +C C S+ + + Sbjct: 61 PGGGYRLALPTDQISIGMVISAVNENINVTRCLG--KGNCQGGVECLTHSLWQDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV +S K Sbjct: 119 DFLDEITLAELVEKKSGKHK 138 >gi|71908531|ref|YP_286118.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica RCB] gi|71848152|gb|AAZ47648.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas aromatica RCB] Length = 159 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +DY +RVLMY D I++IA A IS+ L K+ L + G +ETVRG+ Sbjct: 1 MRLSAFSDYSLRVLMYLGAQTDRLATIAEIAAAHDISKSHLMKVAYQLGRGGYIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +I + +V++ TE F +AECFA K C + G+C L ++L +AL A F Sbjct: 61 GGGLRLAHEPQEIVVGEVIRQTESDFTLAECFAD-KSTCRIQGACCLPAILNEALKAMFL 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL Y++ L+R + + Sbjct: 120 VLDGYTLADLLRTPGKLMPLAG 141 >gi|53719983|ref|YP_108969.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|76809787|ref|YP_334214.1| Rrf2 family protein [Burkholderia pseudomallei 1710b] gi|126442125|ref|YP_001059734.1| putative transcriptional regulator [Burkholderia pseudomallei 668] gi|126454292|ref|YP_001067019.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134277895|ref|ZP_01764610.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|167720485|ref|ZP_02403721.1| putative transcriptional regulator [Burkholderia pseudomallei DM98] gi|167739474|ref|ZP_02412248.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167816678|ref|ZP_02448358.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167846586|ref|ZP_02472094.1| putative transcriptional regulator [Burkholderia pseudomallei B7210] gi|167903554|ref|ZP_02490759.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC 13177] gi|167911804|ref|ZP_02498895.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|237813128|ref|YP_002897579.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|242315306|ref|ZP_04814322.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254184271|ref|ZP_04890861.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|254191305|ref|ZP_04897809.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|254195724|ref|ZP_04902150.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|254261403|ref|ZP_04952457.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] gi|52210397|emb|CAH36378.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|76579240|gb|ABA48715.1| Rrf2 family protein [Burkholderia pseudomallei 1710b] gi|126221618|gb|ABN85124.1| putative transcriptional regulator [Burkholderia pseudomallei 668] gi|126227934|gb|ABN91474.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134251545|gb|EBA51624.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|157938977|gb|EDO94647.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|169652469|gb|EDS85162.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|184214802|gb|EDU11845.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|237506106|gb|ACQ98424.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|242138545|gb|EES24947.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254220092|gb|EET09476.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] Length = 162 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|330445010|ref|ZP_08308664.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493128|dbj|GAA03161.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 143 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 5/144 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G VETVRG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELASITKVTETYNVSRNHMVKIINKLGQLGYVETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL PA I + DVV+A E + C A C + +C L +L A AF Sbjct: 61 KNGGIRLGMPASTIIVGDVVRAIE-PLQIVNCSADF---CHITPACRLKGILANAREAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L +++ LV + + + + N+ Sbjct: 117 AELDNHTLLSLVEDNAPLLDLLNS 140 >gi|253698991|ref|YP_003020180.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251773841|gb|ACT16422.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 152 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + D+IT+ VV+ATE + +C K +C GSC +V ++ N Sbjct: 61 PQGGYCLAKSPDEITVRAVVEATEGDTLIVDCAGRKKGECSFDGSCVTQTVWEESNNRLN 120 Query: 120 DVLTQYSIECLVRNRSSI 137 + +++ L ++ Sbjct: 121 EFFESITLKTLCDRGETL 138 >gi|110802830|ref|YP_699071.1| hypothetical protein CPR_1756 [Clostridium perfringens SM101] gi|110683331|gb|ABG86701.1| rrf2 family protein [Clostridium perfringens SM101] Length = 153 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI+ P I I++ ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+ D+++ E +++C + C V C + +K + Sbjct: 61 AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +V +++ +V + ++K+ Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138 >gi|313895892|ref|ZP_07829446.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp. oral taxon 137 str. F0430] gi|320530715|ref|ZP_08031759.1| Rrf2 family protein [Selenomonas artemidis F0399] gi|312975317|gb|EFR40778.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137002|gb|EFW28940.1| Rrf2 family protein [Selenomonas artemidis F0399] Length = 147 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+H + I IA++ ISE +L +++ PL +AG+VE+VRG Sbjct: 1 MKLSTKGRYSVTALYELALHYGEGVVPIKTIAKSQGISENYLEQLMLPLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115 +GG L RP ++TI +++ A E + +C + C G+C + + Sbjct: 61 AQGGYTLSRPPAEVTIGEIITAVEGPIALVDCLLTDVDAGDQSCVHAGACATRQIWEEVC 120 Query: 116 NAFFDVLTQYSIECLVR 132 A VL S+ L+R Sbjct: 121 AAINSVLNNISLAHLLR 137 >gi|238750360|ref|ZP_04611861.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC 43380] gi|238711291|gb|EEQ03508.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC 43380] Length = 185 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R Sbjct: 82 PGGGYLLGKDASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 140 SFLNNITLAELVNNQDILE 158 >gi|331269734|ref|YP_004396226.1| BadM/Rrf2 family transcriptional regulator [Clostridium botulinum BKT015925] gi|329126284|gb|AEB76229.1| transcriptional regulator, BadM/Rrf2 family [Clostridium botulinum BKT015925] Length = 144 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ AI+ + P I IA ISEL+L ++ PL KA ++++VRG Sbjct: 1 MKLSTKGRYGVRAMVDLAINYGESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ D++ E ++ C S + C + C + K N+ Sbjct: 61 AQGGYVLNKHPKEISVSDIIDVLEGPIEISSCIDSGE--CNNMEVCPTRLLWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V +++ + + +K Sbjct: 119 EVTQSITLQDMANDYKRLK 137 >gi|308048583|ref|YP_003912149.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307630773|gb|ADN75075.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica DSM 9799] Length = 144 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D+ R L+Y + + IS++ E +S + K++ L AG V TVRG Sbjct: 1 MQLTSFSDFAFRALIYLGTLPKEELTSISRVTEVYGVSRNHMVKVINKLGHAGFVTTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG+RL + +I + DVV+A E + +C + C +V +C L VL +A NAF Sbjct: 61 KKGGIRLAKAPAEIGLGDVVRALE-PLKLVDCGSPF---CHIVPACRLKGVLEEATNAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L QY++ ++ N + + Sbjct: 117 AALDQYTLADMLSNNPHLVTLLQ 139 >gi|255067242|ref|ZP_05319097.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256] gi|255048610|gb|EET44074.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256] Length = 154 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAEA IS+ L K++ LVK G + ++RG+ Sbjct: 1 MYLTQHTDYGLRVLIYAAINDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL D+I + VV+ E V EC +C + SC LT +L A+ AFF Sbjct: 61 GGGLRLADTPDKINVGAVVRHLE-PMQVVECMG-ENNECLITPSCRLTGILGGAIKAFFA 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 HLDGFTLQDLLNKPT 133 >gi|310658799|ref|YP_003936520.1| DNA-binding transcriptional repressor [Clostridium sticklandii DSM 519] gi|308825577|emb|CBH21615.1| DNA-binding transcriptional repressor [Clostridium sticklandii] Length = 148 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG++ + A+ + P + IA+ +SE +L +I L K+G+V++VR Sbjct: 1 MKLSTKGRYGLKAIFELALKEEENLPLSLKYIADKNGLSEQYLEQIFAILKKSGLVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L +P+ QIT+ V++A E ++C DC C V ++ ++ Sbjct: 61 GAQGGYYLSKPSSQITVGQVLRALEGPMAPSDCVLEEDADCENSDFCVTKVVWQRIKDSV 120 Query: 119 FDVLTQYSIECLVRNRS 135 V+ +++ +V + Sbjct: 121 DSVIDSVTLKDMVLDHK 137 >gi|163797341|ref|ZP_02191294.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] gi|159177432|gb|EDP61988.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] Length = 158 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +R L+ A++ I +IA IS+ L K++ L + I+ + RG+ Sbjct: 1 MQLSQFTDYALRTLILVALNGSRRTTIDEIATRYGISKEHLRKVVHLLSRLSILHSTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL PA I I D+V+ATE F +AEC A CP+ G C L+ +LR A AF Sbjct: 61 GGGLRLNIPAKAIRIGDIVRATEGGFAMAECLRADRAGHCPIDGVCRLSGILRGATAAFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L ++++ L+ +R S+ + Sbjct: 121 TELDRHTLADLIADRDSLLQRL 142 >gi|197116760|ref|YP_002137187.1| BadM/Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197086120|gb|ACH37391.1| transcriptional regulator, BadM/Rrf2 family [Geobacter bemidjiensis Bem] Length = 152 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + ++IT+ V++ATE + +C + K +C GSC +V ++ N Sbjct: 61 PQGGYCLAKSPEEITVRAVIEATEGDTLIVDCASRKKGECNFDGSCVTQTVWEESNNRLN 120 Query: 120 DVLTQYSIECLVRNRSSI 137 + +++ L ++ Sbjct: 121 EFFESITLKTLCDRGETL 138 >gi|317049750|ref|YP_004117398.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b] gi|316951367|gb|ADU70842.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] Length = 147 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ + +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDYGLRALIYMATLPEGTQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL ++I I DVV+ E + C +C + +C L L A+ F Sbjct: 61 KNGGIRLGMDPEKIVIGDVVRKME-PLQLVNC-----NECSITPACRLRKALNDAVQLFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV+ S+ +I Sbjct: 115 RELDNYTLADLVKGNDSLYQIL 136 >gi|225375164|ref|ZP_03752385.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM 16841] gi|225212990|gb|EEG95344.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM 16841] Length = 163 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A++N P + IA IS+ +L +I+ L KA V+++RG Sbjct: 21 MKVSTKGRYALRLMLDLAVNNTGEPISLKDIARRQGISDKYLEQIISVLNKAKYVKSIRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + ++ TI +++ TE S C C + C V +K A Sbjct: 81 AQGGYILTKKPEEYTIGMILRLTEGSLAPVACVEEENT-CEKIHDCATILVWQKMNEAIN 139 Query: 120 DVLTQYSIECLVR 132 DV+ +++ LV Sbjct: 140 DVVDHMTLQDLVD 152 >gi|37528395|ref|NP_931740.1| transcriptional repressor NsrR [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418099|sp|Q7MYU4|NSRR_PHOLL RecName: Full=HTH-type transcriptional repressor nsrR gi|36787833|emb|CAE16948.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 141 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ + +S + KI+ L G+V+ VRG Sbjct: 1 MQLTSFTDYGLRALIYMASLPQSRMTSISEVTDIYGVSRNHMVKIINQLSHLGLVDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA I I DVV+A E + C C + +C L VL +A+ F Sbjct: 61 KNGGIRLGKPAKDIRIGDVVRALE-PLSLVNCSQE---SCHITSACRLKVVLNQAIERFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + L ++++ ++ + + K+ Sbjct: 117 EELDKHTLADMIEDNIPLYKLL 138 >gi|238022039|ref|ZP_04602465.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147] gi|237866653|gb|EEP67695.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147] Length = 152 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL+Y A+++ I IAE IS+ L K++ LVK G + ++RG+ Sbjct: 1 MYLTQQTDYALRVLIYAAVNDQSLVNIGTIAETYNISKSHLMKVVTALVKGGFLTSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L +P ++I + VV+ TE +AECF + C + +C L+ +L L AF + Sbjct: 61 GGGLKLAQPPEKIRVGTVVRVTE-PLQLAECFGDNN-QCLITPTCRLSQILNSGLIAFIN 118 Query: 121 VLTQYSIECLVRNRS 135 L Y++ LV + Sbjct: 119 HLDGYTLADLVNAPT 133 >gi|229586877|ref|YP_002845378.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|228021927|gb|ACP53635.1| Putative transcriptional regulator [Rickettsia africae ESF-5] Length = 142 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 66/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + + D+++ E + + ECF + C + SC +++A AF Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEAFIK 120 Query: 121 VLTQYSIEC 129 L Y++E Sbjct: 121 TLNNYTLED 129 >gi|167563455|ref|ZP_02356371.1| Rrf2 family protein [Burkholderia oklahomensis EO147] gi|167570625|ref|ZP_02363499.1| Rrf2 family protein [Burkholderia oklahomensis C6786] Length = 161 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 56/131 (42%), Positives = 77/131 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHNVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P +I I DV++A+E F + ECF H C L C L +L AL A+F Sbjct: 61 GGGVRLALPPGRIGIGDVIRASETDFRLVECFDRHTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|157377604|ref|YP_001476204.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319978|gb|ABV39076.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis HAW-EB3] Length = 151 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY AI D RIS+I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGIRTLMYLAIQPDREELFRISEITEVFELSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL I + +V+ E S +C K C SC L VL A+ A+ Sbjct: 61 GKSGGFRLGMSPKDINVGKLVRVLENSLAPIDCS---KPYCRFTPSCQLKGVLADAVAAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 V+ Y++E +V N+ +K++ Sbjct: 118 LAVIDAYTLEDIVSNKDELKQLL 140 >gi|291166173|gb|EFE28219.1| Rrf2 family protein [Filifactor alocis ATCC 35896] Length = 147 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + YG++ + A++ D P + IA +SE +L +I L K+G+V +VR Sbjct: 1 MKLSTKGRYGLKAMYDLAVYEDLHEPISLKAIASNNNLSEQYLEQIFSKLKKSGLVNSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R + +IT+ D+++ + + C C C +V +K ++ Sbjct: 61 GAQGGYVLSRSSKEITVGDIIRVLDGPIAPSMCLLEEVGPCISGKDCPTRAVWKKIKDSV 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 DV+ ++ +V IK Sbjct: 121 DDVIDNITLYDMVIEHKLIK 140 >gi|52425782|ref|YP_088919.1| hypothetical protein MS1727 [Mannheimia succiniciproducens MBEL55E] gi|52307834|gb|AAU38334.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 150 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI+ D P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIAINAEDGPVTLSDISERQNISLSYLEQLFAKLRRHGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +P+ QI+I ++ A E+ V +C +C C + + + Sbjct: 61 PGGGYQLGQPSGQISIGMIIAAVNENISVTKCLGQG--NCQGGKVCLTHHLWAELSDRIE 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 + L + ++E LV + S K Sbjct: 119 NFLNEITLEELVSKQHSQK 137 >gi|294143081|ref|YP_003559059.1| Rrf2 family protein [Shewanella violacea DSS12] gi|293329550|dbj|BAJ04281.1| Rrf2 family protein [Shewanella violacea DSS12] Length = 152 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 76/143 (53%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT TD+GIR LMY AI D RI++I + +S + KI+ L K G +ET+R Sbjct: 1 MQLTHYTDFGIRTLMYLAIQPDRETLFRIAEITQVFDLSPNHVSKIVHRLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL + I I +V+ E S +C K C L SC L VL +A+ A+ Sbjct: 61 GKSGGFRLGKSPQDINIGQLVRVLENSLAPIDCS---KPYCRLTPSCQLRGVLAEAVTAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL QYS+ +V N + K+ Sbjct: 118 LTVLDQYSLADIVSNNRELIKLL 140 >gi|114705699|ref|ZP_01438602.1| Aau3 protein [Fulvimarina pelagi HTCC2506] gi|114538545|gb|EAU41666.1| Aau3 protein [Fulvimarina pelagi HTCC2506] Length = 149 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++T+Y IR+LMY A++ D +R+ +IA+A E F+FKIL PLV AG+VETVRGR Sbjct: 1 MRLTRQTNYAIRILMYLAVNKDRLSRLGEIAKAYSAPEPFMFKILNPLVSAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A +I + +VV+ TEESF +AECF + DCPL+ SC L + LR+AL AF Sbjct: 61 NGGIRLAREATRINLREVVELTEESFQMAECFETG-ADCPLIFSCELNAALRQALEAFLS 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L +YS+E L +N+ + + Sbjct: 120 TLGRYSLEDLTKNKGYLHRTLG 141 >gi|15892744|ref|NP_360458.1| hypothetical protein RC0821 [Rickettsia conorii str. Malish 7] gi|15619921|gb|AAL03359.1| unknown [Rickettsia conorii str. Malish 7] Length = 142 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 66/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + + D+++ E + + ECF + C + SC +++A AF Sbjct: 61 GGGIKLAFNPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120 Query: 121 VLTQYSIEC 129 L Y++E Sbjct: 121 TLNNYTLED 129 >gi|322806906|emb|CBZ04476.1| iron-sulfur cluster regulator IscR [Clostridium botulinum H04402 065] Length = 148 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+ D+++ E ++ C C + C + K + Sbjct: 61 AQGGYILNRHPEDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 +++ +++ +V + I Sbjct: 120 NIMESTTLQDMVEDYKKIN 138 >gi|169333997|ref|ZP_02861190.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM 17244] gi|169258714|gb|EDS72680.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A + D + ++++ IS +L +I L K G + +VRG Sbjct: 1 MKISTKGRYALRLMIDLAKNYDGKYITLKEVSKRQDISIKYLEQITTQLCKVGYLNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + + T D+++ TE S C + + C GSC + N Sbjct: 61 PKGGYKLAKEPREYTAGDILRVTEGSLAPIACLEAEENACTRSGSCATLPFWKGLYNVIE 120 Query: 120 DVLTQYSIECLVRNRSS 136 + + ++E L+ + Sbjct: 121 NYVNNVTLEDLLDDEKD 137 >gi|157371863|ref|YP_001479852.1| DNA-binding transcriptional regulator IscR [Serratia proteamaculans 568] gi|189044752|sp|A8GHY4|ISCR_SERP5 RecName: Full=HTH-type transcriptional regulator iscR gi|157323627|gb|ABV42724.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 164 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKDASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLAELVNNQDVL 136 >gi|303245724|ref|ZP_07332007.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302492987|gb|EFL52852.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 147 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A+H D P RI +A +S +L K+++ L +AG V + RG Sbjct: 1 MKLTTRSRYGTRMILDMALHAVDGPVRIKDVAARQGVSIKYLEKLVRELKQAGFVRSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 RGG L +P +IT+ +V+A E + EC CP + C V +A A Sbjct: 61 PRGGHELAKPLSEITVGAIVRALEGDISLVECDGEGSGQSCPRLADCLTREVWAEAARAM 120 Query: 119 FDVLTQYSIECLVRNRSS 136 + L ++ LV + Sbjct: 121 HERLDAITLADLVAKADA 138 >gi|226356822|ref|YP_002786562.1| Rff2 family transcriptional regulator [Deinococcus deserti VCD115] gi|226318812|gb|ACO46808.1| putative transcriptional regulator, Rff2 family [Deinococcus deserti VCD115] Length = 151 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++E IS+ +L +I L +AG ++++RG Sbjct: 1 MWVSTKAQYGLRALIEIGRRDGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA I+ DVV A E S C C CG ++ + A D Sbjct: 61 HGGYRLSRPAADISAYDVVTAMEGSLAPVSCVEDDHT-CDHQNVCGTQNLWHRVDAALKD 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL ++ L+ ++ Sbjct: 120 VLGSTTLADLIVESEQLQ 137 >gi|312143964|ref|YP_003995410.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] gi|311904615|gb|ADQ15056.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] Length = 150 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A H + I +I+E ISE +L ++ L KA +V++VRG Sbjct: 1 MKISTKGRYGLRALVDLAEHEEGKAIPIRKISERQDISEQYLEQLFATLRKAKLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I++ +++ A E +C C V C + + + +A Sbjct: 61 AHGGYMLNHEPEDISVAEILTALEGPLVPVDCVVEENF-CNYVDRCVMHGLWEEMADAIN 119 Query: 120 DVLTQYSIECLVRN 133 +++ ++ L+ Sbjct: 120 EIIENTTLADLLER 133 >gi|295109801|emb|CBL23754.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum A2-162] Length = 143 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ A HN + IA+ ISE +L I+ L K V+ +RG Sbjct: 1 MKISTRGRYALRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + TI +++ TE S C H C SC + + Sbjct: 61 KGGGYRLAKTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEEFYKLIN 120 Query: 120 DVLTQYSIECLVRNRSSI 137 + ++E L+ +S + Sbjct: 121 EYFDGITLEDLLEQKSDV 138 >gi|92118751|ref|YP_578480.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801645|gb|ABE64020.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter hamburgensis X14] Length = 142 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT DY +R+LMY A H+D I + A IS L K+ L +AG ++ VRGR Sbjct: 1 MRLTSFFDYTLRLLMYAATHSDRLITIEETAGVYGISRTHLMKVANQLTRAGYLKAVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++I + DV+ ATE F + ECF+++ CP+ SC L + LR+AL AF Sbjct: 61 SGGLALAKRPNRIKLGDVLCATEPDFALVECFSANN-HCPISSSCRLRAPLREALAAFTA 119 Query: 121 VLTQYSIECLV 131 L +Y++ L+ Sbjct: 120 TLDRYTLADLI 130 >gi|217968854|ref|YP_002354088.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thauera sp. MZ1T] gi|217506181|gb|ACK53192.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T] Length = 163 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T+ TDY +R+LMY + I ++AE IS L K++ LV G V+ RG+ Sbjct: 1 MNITQHTDYALRLLMYLGTCTERRVTIKEVAERFDISRSHLMKVVTGLVAKGFVDGARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A QI + DVV+ E SF + ECF S C L +C L L AL AFF Sbjct: 61 GGGLRLARAATQIGLGDVVRGMEPSFELVECFGSGS-HCLLDPACRLKGALAGALQAFFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L + ++ L+ + + + Sbjct: 120 ALDRLTLADLIGDDGQLHAVLG 141 >gi|255528018|ref|ZP_05394855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296185461|ref|ZP_06853871.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] gi|255508287|gb|EET84690.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296050295|gb|EFG89719.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] Length = 151 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+H + P+ I IAE ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGQYGVKAMVDLAVHYGEGPSSIKSIAERQNISEYYLEQLFSPLRKANLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L R +T+ ++++ E +++C H + C + C + + + Sbjct: 61 AQGGYVLEREPKDMTVFEIMEVLEGPVEISKCIDEHNENSCGNMDCCATRLLWSRIKESI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V+ ++E +V + +K Sbjct: 121 DSVMKATTLEDMVEDYKKMK 140 >gi|163761538|ref|ZP_02168610.1| iron-responsive transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162281252|gb|EDQ31551.1| iron-responsive transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 155 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +T+Y +R+LM+C D ++ +IA + E FLF ILQ L G++ET RGR Sbjct: 1 MKLTSQTNYAVRMLMFCHSKGDR-AKVKEIAAFYGLPERFLFNILQRLTAVGLMETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA+QI + DVV+ EE+F +AECF + DCPL+ +CGL L +AL +FFD Sbjct: 60 GGGIRLARPAEQIMLGDVVRLVEENFEMAECFEAGGTDCPLINTCGLNKALSEALRSFFD 119 Query: 121 VLTQYSIECL 130 L +YSI L Sbjct: 120 SLNRYSIADL 129 >gi|89072688|ref|ZP_01159253.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89051508|gb|EAR56962.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 183 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 13 MKLTSKGRYAVTAMLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I + V+ A +ES +C K DC C ++ + Sbjct: 73 PGGGYRLGEEASDIAVGMVIAAVDESVDATKCHG--KGDCQGGARCLTHTLWHDLSDRIS 130 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+++ Sbjct: 131 GFLNNITLGELMKDND 146 >gi|330831194|ref|YP_004394146.1| Rrf2 family protein [Aeromonas veronii B565] gi|328806330|gb|AEB51529.1| Rrf2 family protein [Aeromonas veronii B565] Length = 156 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 80/144 (55%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG Sbjct: 1 MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYGVSRNHMVKVVNQLVKLGYLQSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+R+ I I V++A E + +C C +V C L S L++A++AF Sbjct: 61 KNGGIRMACDPATINIGQVIRALEGNLDGIDC---GSPACHIVSVCLLKSALKEAMDAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 V+ Y+++ L+ NR ++++F Sbjct: 118 AVMDSYTLQDLLANRDELQRVFGE 141 >gi|50122160|ref|YP_051327.1| DNA-binding transcriptional regulator IscR [Pectobacterium atrosepticum SCRI1043] gi|81644317|sp|Q6D258|ISCR_ERWCT RecName: Full=HTH-type transcriptional regulator iscR gi|49612686|emb|CAG76136.1| putative transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 164 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGRE--SCQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L +++ LV N+ + Sbjct: 119 DFLNNITLDELVNNKEVLN 137 >gi|161524598|ref|YP_001579610.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350646|ref|YP_001946274.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198118|ref|ZP_03571164.1| putative transcriptional regulator [Burkholderia multivorans CGD2M] gi|221208391|ref|ZP_03581394.1| putative transcriptional regulator [Burkholderia multivorans CGD2] gi|221215143|ref|ZP_03588110.1| putative transcriptional regulator [Burkholderia multivorans CGD1] gi|160342027|gb|ABX15113.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans ATCC 17616] gi|189334668|dbj|BAG43738.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221165079|gb|EED97558.1| putative transcriptional regulator [Burkholderia multivorans CGD1] gi|221171804|gb|EEE04248.1| putative transcriptional regulator [Burkholderia multivorans CGD2] gi|221182050|gb|EEE14451.1| putative transcriptional regulator [Burkholderia multivorans CGD2M] Length = 161 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG+RL + ++T+ +VV+ATE F + CF C + C L VL A +AF Sbjct: 61 NGGLRLFPASLKLTVGEVVRATETDFALVGCFVAGDDTRGCVIEPQCRLKGVLAAARDAF 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 F L ++++ L ++ + Sbjct: 121 FAELERHTLAELAEPAPALVSLLG 144 >gi|24371645|ref|NP_715687.1| Rrf2 family protein [Shewanella oneidensis MR-1] gi|24345407|gb|AAN53132.1|AE015456_2 Rrf2 family protein [Shewanella oneidensis MR-1] Length = 151 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RIS+I E +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRISEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + ++++ E S +C K C +C L VL +A+ A+ Sbjct: 61 GKMGGFRLGKPAGEINLGQLIRSLENSLAPIDCS---KPYCRFTPACQLKGVLAQAVEAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +VL QYS+ +V NR+ + + Sbjct: 118 LNVLDQYSLLDIVSNRNELLALL 140 >gi|186475702|ref|YP_001857172.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815] gi|184192161|gb|ACC70126.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815] Length = 175 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 5/147 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ ++ I I++A IS+ L K++Q L + G VETVRGR Sbjct: 11 MRLTDYTDYSLRVLLYLAVRSEGLATIQDISDAYGISKNHLMKVVQRLAELGWVETVRGR 70 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKAL 115 GG+RL + +T+ +VV+ATE F + C + +C + C L S+L A Sbjct: 71 NGGLRLYEHSSSLTVGEVVRATESDFALVSCLNVADASGAHRECVIQSHCRLKSILESAR 130 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142 +AFF L Y+I + S + + Sbjct: 131 DAFFRELDNYTIRDIAEPASPLISLLG 157 >gi|289208504|ref|YP_003460570.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thioalkalivibrio sp. K90mix] gi|288944135|gb|ADC71834.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. K90mix] Length = 159 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + +M AIH+ P ++ I++ IS +L ++ L KA +VE VRG Sbjct: 1 MKLSTKGRYAVTAMMDLAIHDRVGPVTLADISQCQGISLSYLEQLFAKLRKADLVEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + ADQI+I +++ A +ES V C DC C + + Sbjct: 61 PGGGYRLAKRADQISIANIITAVDESVDVTRC--KGHKDCQDGERCLTHELWDDLSQQLY 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L ++ NR ++K+ Sbjct: 119 DFLDGITLAQFA-NRPEVQKV 138 >gi|325579030|ref|ZP_08148986.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus parainfluenzae ATCC 33392] gi|325159265|gb|EGC71399.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus parainfluenzae ATCC 33392] Length = 151 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHAGTNPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL ADQI+I V+ A E+ V C K +C C S+ + + Sbjct: 61 PGGGYRLALSADQISIGMVISAVNENIDVTRCLG--KGNCKGGVECLTHSLWQDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV ++ K Sbjct: 119 DFLDEITLAELVEKKTGKHK 138 >gi|261379265|ref|ZP_05983838.1| transcriptional repressor NsrR [Neisseria subflava NJ9703] gi|284797696|gb|EFC53043.1| transcriptional repressor NsrR [Neisseria subflava NJ9703] Length = 152 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I I VV+ E V EC + +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADNPENINIGAVVRHLE-PMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLVRNRS 135 L QYS++ L+ + Sbjct: 119 HLDQYSLQDLLDKPT 133 >gi|22125232|ref|NP_668655.1| DNA-binding transcriptional regulator IscR [Yersinia pestis KIM 10] gi|45442337|ref|NP_993876.1| DNA-binding transcriptional regulator IscR [Yersinia pestis biovar Microtus str. 91001] gi|170023521|ref|YP_001720026.1| DNA-binding transcriptional regulator IscR [Yersinia pseudotuberculosis YPIII] gi|186896270|ref|YP_001873382.1| DNA-binding transcriptional regulator IscR [Yersinia pseudotuberculosis PB1/+] gi|21958101|gb|AAM84906.1|AE013736_2 hypothetical protein y1333 [Yersinia pestis KIM 10] gi|45437201|gb|AAS62753.1| Predicted transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|169750055|gb|ACA67573.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis YPIII] gi|186699296|gb|ACC89925.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pseudotuberculosis PB1/+] Length = 185 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES C K C C ++ R Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRCLTHTLWRDLSERIS 139 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 140 SFLNNITLAELVNNQDILE 158 >gi|242280449|ref|YP_002992578.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123343|gb|ACS81039.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio salexigens DSM 2638] Length = 143 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+++ A H P RIS IA +S +L K+++ L KAG + + RG Sbjct: 1 MRLTTRSRYGTRMILDIATHCTAGPVRISDIASRQGLSTKYLEKLIRELKKAGFIASKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + IT+ VV++ E + EC + + C + +C V KA A + Sbjct: 61 PGGGHSLAMAPEDITVGAVVRSLEGDAGLVECLDNDDL-CKRIDNCPTREVWIKASKAMY 119 Query: 120 DVLTQYSIECLVRNRS 135 L + SI L++ S Sbjct: 120 AALDEISIADLLKEGS 135 >gi|308050471|ref|YP_003914037.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632661|gb|ADN76963.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica DSM 9799] Length = 153 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAILDVALHSPEGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA +I + VV A +ES C K +C C S+ + Sbjct: 61 PGGGYLLGRPAAEIAVGMVVHAVDESVDATRCHG--KSNCQGGARCLTHSLWGDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L S+ L+ NR Sbjct: 119 SFLNGISLADLMANRD 134 >gi|270264746|ref|ZP_06193011.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041429|gb|EFA14528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 164 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKEASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLAELVNNQEVL 136 >gi|167581217|ref|ZP_02374091.1| Rrf2 family protein [Burkholderia thailandensis TXDOH] gi|167619304|ref|ZP_02387935.1| Rrf2 family protein [Burkholderia thailandensis Bt4] gi|257138520|ref|ZP_05586782.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 161 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++++E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLADLV 131 >gi|83720448|ref|YP_442322.1| Rrf2 family protein [Burkholderia thailandensis E264] gi|83654273|gb|ABC38336.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 164 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 4 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++++E F + ECF + C L C L +L AL A+F Sbjct: 64 GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 124 ELDGATLADLV 134 >gi|325290069|ref|YP_004266250.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] gi|324965470|gb|ADY56249.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] Length = 165 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R YG+++++ A+H N+ P + +A+ +SE +L +++ L KAG+V+++RG Sbjct: 1 MRFSTRGRYGVQLMVDLALHSNNEPISLKSVADRQKLSEHYLEQLVPDLRKAGMVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 +GG L + + I + D+++A E EC + C C V + ++ Sbjct: 61 AQGGYILAKKTEDIIVGDIIRALEGPIAPVECSGQKTENCCEKTNFCLTREVWVRVSDSI 120 Query: 119 FDVLTQYSIECLVRNRSS 136 D++ S+ LV+ Sbjct: 121 NDLVDSISLADLVQEAEK 138 >gi|148380524|ref|YP_001255065.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|153931906|ref|YP_001384811.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397] gi|153936580|ref|YP_001388282.1| rrF2 family protein [Clostridium botulinum A str. Hall] gi|153940007|ref|YP_001391866.1| rrF2 family protein [Clostridium botulinum F str. Langeland] gi|168180542|ref|ZP_02615206.1| rrF2 family protein [Clostridium botulinum NCTC 2916] gi|170756317|ref|YP_001782184.1| rrF2 family protein [Clostridium botulinum B1 str. Okra] gi|170760847|ref|YP_001787887.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|226949924|ref|YP_002805015.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto] gi|148290008|emb|CAL84127.1| RRF2 family regulatory protein [Clostridium botulinum A str. ATCC 3502] gi|152927950|gb|ABS33450.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397] gi|152932494|gb|ABS37993.1| rrF2 family protein [Clostridium botulinum A str. Hall] gi|152935903|gb|ABS41401.1| rrF2 family protein [Clostridium botulinum F str. Langeland] gi|169121529|gb|ACA45365.1| rrF2 family protein [Clostridium botulinum B1 str. Okra] gi|169407836|gb|ACA56247.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|182668574|gb|EDT80553.1| rrF2 family protein [Clostridium botulinum NCTC 2916] gi|226841762|gb|ACO84428.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto] gi|295319890|gb|ADG00268.1| rrF2 family protein [Clostridium botulinum F str. 230613] Length = 148 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R IT+ D+++ E ++ C C + C + K + Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 +++ +++ +V + I Sbjct: 120 NIMESTTLQDMVEDYKKIN 138 >gi|315633897|ref|ZP_07889186.1| iron-sulfur cluster assembly transcription regulator IscR [Aggregatibacter segnis ATCC 33393] gi|315477147|gb|EFU67890.1| iron-sulfur cluster assembly transcription regulator IscR [Aggregatibacter segnis ATCC 33393] Length = 160 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH D P +S I+E IS +L ++ L + +V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIAIHADNGPVSLSDISERQHISLSYLEQLFAKLRRNNLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + I+I ++ A E+ +C K +C C ++ K Sbjct: 61 PGGGYKLGHMPEDISIGMIIAAVNENIDTTKCLG--KGNCQNGQECLTHTLWDKLSQRIA 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV K Sbjct: 119 DFLNEITLAELVSQHKQKKP 138 >gi|171317873|ref|ZP_02907050.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] gi|171096942|gb|EDT41812.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] Length = 172 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + ++T+ VV+ATE F + CF++ C + C L VL A +A Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATESDFALVGCFSADGGASRGCVIEPQCRLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++ L S + + Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145 >gi|317490853|ref|ZP_07949289.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920400|gb|EFV41723.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacteriaceae bacterium 9_2_54FAA] Length = 165 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKDAAEIAVGTVITAVDESVDATRC--QGKEGCQGGTRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLAELVNNQEVL 136 >gi|323499942|ref|ZP_08104901.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326] gi|323315183|gb|EGA68235.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326] Length = 168 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C + K DC C ++ R + Sbjct: 61 PGGGYRLGEDAYTIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+++ ++ Sbjct: 119 DFLNNITLGELMKDNEVLE 137 >gi|238795105|ref|ZP_04638696.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC 29909] gi|238725553|gb|EEQ17116.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC 29909] Length = 185 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES C K C C ++ R Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 140 SFLNNITLAELVNNQDILE 158 >gi|123441401|ref|YP_001005388.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238788188|ref|ZP_04631983.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii ATCC 33641] gi|332162656|ref|YP_004299233.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|189044754|sp|A1JKQ1|ISCR_YERE8 RecName: Full=HTH-type transcriptional regulator iscR gi|122088362|emb|CAL11153.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238723775|gb|EEQ15420.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii ATCC 33641] gi|318606762|emb|CBY28260.1| iron-sulfur cluster regulator IscR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666886|gb|ADZ43530.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859250|emb|CBX69600.1| HTH-type transcriptional regulator iscR [Yersinia enterocolitica W22703] Length = 164 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 119 SFLNNITLAELVNNQDILE 137 >gi|254519288|ref|ZP_05131344.1| rrf2 family protein [Clostridium sp. 7_2_43FAA] gi|226913037|gb|EEH98238.1| rrf2 family protein [Clostridium sp. 7_2_43FAA] Length = 150 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ A+H D P I I++ ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAMHYGDAPVSIKTISQRQNISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L IT+ DV+ E +AEC +C + C + K N+ Sbjct: 61 AQGGYVLNYAPKDITVADVMNVLEGPVEIAECI--EGTECDNIDFCATRLLWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +V+ +++ +V + +K Sbjct: 119 EVMKNITLQDIVDDYVRMKD 138 >gi|238765525|ref|ZP_04626441.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC 33638] gi|238796770|ref|ZP_04640276.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC 43969] gi|238696264|gb|EEP89065.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC 33638] gi|238719501|gb|EEQ11311.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC 43969] Length = 164 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 119 SFLNNITLAELVNNQDILE 137 >gi|260429411|ref|ZP_05783388.1| putative transcriptional regulator [Citreicella sp. SE45] gi|260420034|gb|EEX13287.1| putative transcriptional regulator [Citreicella sp. SE45] Length = 159 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 57/141 (40%), Positives = 80/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IRVLM+CA ++ ++IA C SE L +++ L + G + T RGR Sbjct: 1 MRVTKRTNIAIRVLMHCAANSGRLVTKAEIARRCNASENHLAQVINQLAQLGYLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPADQI I DV +A E +AECFA CPL +C L L A +AF+ Sbjct: 61 HGGLELGRPADQIRIGDVFRALEAPVPLAECFADVDNTCPLTNACRLKIALTDAASAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L S++ LV + + + I Sbjct: 121 TLDPISLDTLVCDNAPLMDIL 141 >gi|124385754|ref|YP_001028829.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126450911|ref|YP_001081260.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|254357765|ref|ZP_04974038.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|124293774|gb|ABN03043.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126243781|gb|ABO06874.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|148026892|gb|EDK84913.1| putative transcriptional regulator [Burkholderia mallei 2002721280] Length = 162 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 78/131 (59%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120 Query: 121 VLTQYSIECLV 131 L ++ LV Sbjct: 121 ELDGATLTDLV 131 >gi|317493575|ref|ZP_07951996.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918518|gb|EFV39856.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] Length = 141 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + D I+Q+ + +S + KI+ L +AG V VRG Sbjct: 1 MQLTSFTDFGLRALIYMASLPADQMTNITQVTDVYGVSRNHMVKIINQLSRAGFVTAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I I DVV+ E + C C + +C L VL+KA AF Sbjct: 61 KNGGIRLGRAAKDIRIGDVVRELE-PLTLVNCSHEF---CHITTACRLKQVLQKATQAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Q ++ L+ S + K+ Sbjct: 117 AELDQCTLADLIEENSPLYKLL 138 >gi|261365670|ref|ZP_05978553.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996] gi|288565837|gb|EFC87397.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996] Length = 154 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y A+++D I IAEA IS+ L K++ LVK G + + RG+ Sbjct: 1 MYLTQHTDYGLRVLIYAAVNDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL D+I + VV+ E + EC +C + SC L +L A+ AFF Sbjct: 61 GGGLRLADTPDKINVGAVVRHLE-PMQIVECMG-ENNECLITPSCRLAGILGGAIKAFFA 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 HLDGFTLQDLLNKPT 133 >gi|51597176|ref|YP_071367.1| DNA-binding transcriptional regulator IscR [Yersinia pseudotuberculosis IP 32953] gi|108808332|ref|YP_652248.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Antiqua] gi|108811403|ref|YP_647170.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Nepal516] gi|145599514|ref|YP_001163590.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Pestoides F] gi|149365356|ref|ZP_01887391.1| Fe-S cluster-containing transcription factor [Yersinia pestis CA88-4125] gi|153947579|ref|YP_001400148.1| IscR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162418343|ref|YP_001605041.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Angola] gi|165928257|ref|ZP_02224089.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. F1991016] gi|166008265|ref|ZP_02229163.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166212578|ref|ZP_02238613.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398867|ref|ZP_02304391.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421227|ref|ZP_02312980.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423261|ref|ZP_02315014.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929956|ref|YP_002347831.1| DNA-binding transcriptional regulator IscR [Yersinia pestis CO92] gi|229838481|ref|ZP_04458640.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895486|ref|ZP_04510657.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A] gi|229899050|ref|ZP_04514194.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. India 195] gi|229901657|ref|ZP_04516779.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516] gi|270489849|ref|ZP_06206923.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis KIM D27] gi|294504543|ref|YP_003568605.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003] gi|81638849|sp|Q667Y0|ISCR_YERPS RecName: Full=HTH-type transcriptional regulator iscR gi|119371156|sp|Q1C5G9|ISCR_YERPA RecName: Full=HTH-type transcriptional regulator iscR gi|119371157|sp|Q0WD07|ISCR_YERPE RecName: Full=HTH-type transcriptional regulator iscR gi|119371158|sp|Q1CKB0|ISCR_YERPN RecName: Full=HTH-type transcriptional regulator iscR gi|189044755|sp|A7FFX0|ISCR_YERP3 RecName: Full=HTH-type transcriptional regulator iscR gi|189044756|sp|A4TMV5|ISCR_YERPP RecName: Full=HTH-type transcriptional regulator iscR gi|226711630|sp|A9R819|ISCR_YERPG RecName: Full=HTH-type transcriptional regulator iscR gi|51590458|emb|CAH22098.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775051|gb|ABG17570.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Nepal516] gi|108780245|gb|ABG14303.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Antiqua] gi|115348567|emb|CAL21508.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211210|gb|ABP40617.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis Pestoides F] gi|149291769|gb|EDM41843.1| Fe-S cluster-containing transcription factor [Yersinia pestis CA88-4125] gi|152959074|gb|ABS46535.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pseudotuberculosis IP 31758] gi|162351158|gb|ABX85106.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis Angola] gi|165919764|gb|EDR37097.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. F1991016] gi|165992647|gb|EDR44948.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166206509|gb|EDR50989.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. B42003004] gi|166960716|gb|EDR56737.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051371|gb|EDR62779.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057431|gb|EDR67177.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681586|gb|EEO77680.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516] gi|229687995|gb|EEO80067.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. India 195] gi|229694847|gb|EEO84894.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701292|gb|EEO89320.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A] gi|262362464|gb|ACY59185.1| hypothetical protein YPD4_2278 [Yersinia pestis D106004] gi|270338353|gb|EFA49130.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia pestis KIM D27] gi|294355002|gb|ADE65343.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003] gi|320016040|gb|ADV99611.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 164 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 119 SFLNNITLAELVNNQDILE 137 >gi|296157751|ref|ZP_06840585.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] gi|295891997|gb|EFG71781.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] Length = 166 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIRDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL +T+ ++V+ATE F + CF + + C + C L L A +A Sbjct: 61 NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++I + + + + Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145 >gi|114321038|ref|YP_742721.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114227432|gb|ABI57231.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola ehrlichii MLHE-1] Length = 158 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + +M A+H P ++ I+E+ IS +L ++ L K +V VRG Sbjct: 1 MKLSTKGRYAVTAMMDLALHEGQGPVTLADISESQGISLSYLEQLFARLRKHSLVSGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PADQITI D++ A +E+ C DC C + + Sbjct: 61 PGGGYRLAQPADQITIADIITAVDENVDATRCKGRG--DCQEGERCLTHDLWMDLSRQIY 118 Query: 120 DVLTQYSIECLVRNRS 135 D L ++ L + + Sbjct: 119 DFLNGITLAQLAQEPA 134 >gi|290473406|ref|YP_003466272.1| hypothetical protein XBJ1_0326 [Xenorhabdus bovienii SS-2004] gi|289172705|emb|CBJ79476.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 139 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L G+V +RG Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSNLGLVNAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA +I I DVV++ E + C A C + +C L VL +A+ F Sbjct: 61 KNGGISLGKPASEIKIGDVVRSLE-PLSLVNCSA-----CYITPACRLKLVLNQAVENFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L ++++ +V++ + ++ A Sbjct: 115 QELDKHTLADMVKDNRPLYQLLLA 138 >gi|238753892|ref|ZP_04615252.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC 29473] gi|238707880|gb|EEQ00238.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC 29473] Length = 164 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQNGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A QI + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKDAAQIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 119 SFLNNITLAELVNNQDILE 137 >gi|167771918|ref|ZP_02443971.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM 17241] gi|167665716|gb|EDS09846.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM 17241] Length = 143 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + + +IA+ ISE +L IL+ LV+ + VRG Sbjct: 1 MMISTKGRYALRVMVDLAEHQGEGYIPLKEIAQRQEISEKYLEAILKVLVREHFLIGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R +Q T +++ TE S C H + CP C + +K Sbjct: 61 KGGGYRLSRAPEQYTAGSIIRLTEGSLAPVACLEPHALACPRAAHCRTLPMWKKFDQVVN 120 Query: 120 DVLTQYSIECLVRNRSS 136 D Y++ L+ + + Sbjct: 121 DFFDSYTLADLMEHSEN 137 >gi|227112705|ref|ZP_03826361.1| DNA-binding transcriptional regulator IscR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329514|ref|ZP_03833538.1| DNA-binding transcriptional regulator IscR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 164 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 D L +++ LV N+ + Sbjct: 119 DFLNNITLDELVNNKEVL 136 >gi|163814282|ref|ZP_02205671.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759] gi|158449917|gb|EDP26912.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759] Length = 144 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ A D P I +A ISE +L +I L G+V++ RG Sbjct: 1 MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSMLNSGGLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT+ V++ TE C + + C C + R+ A Sbjct: 61 PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCDREARCSTIGLWRRLDKAIR 120 Query: 120 DVLTQYSIECLVRNRSS 136 DV+ +I LV R Sbjct: 121 DVVDTTTIADLVAERPE 137 >gi|238758817|ref|ZP_04619990.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC 35236] gi|238702925|gb|EEP95469.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC 35236] Length = 185 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES C K C C ++ R Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 140 SFLNNITLAELVNNQDILE 158 >gi|118444398|ref|YP_878357.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium novyi NT] gi|118134854|gb|ABK61898.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium novyi NT] Length = 144 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ AI+ + P I IA+ ISEL+L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVRAMVDLAINYGESPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I++ D++ E ++ C + + C + C + +K + Sbjct: 61 AQGGYVLNKHPKDISVSDIINVLEGPIEISSCVDTGE--CDNMNVCPTRLLWKKIKKSID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 V +++ + + +K Sbjct: 119 KVTESVTLQDMANDYKRLK 137 >gi|91783441|ref|YP_558647.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687395|gb|ABE30595.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia xenovorans LB400] Length = 166 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + + I I++A IS L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISDAYGISRNHLMKVVQQLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL +T+ ++V+ATE F + CF + + C + C L L A +A Sbjct: 61 NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L +++I + + + + Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145 >gi|291543838|emb|CBL16947.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. 18P13] Length = 142 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A HN ++ IAE ISE +L I+ L K G+V+ +RG Sbjct: 1 MMISTKGRYALRVMIDLAEHNSGGYVPLADIAERQEISEKYLESIVSMLSKKGLVDALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ D++ TE S C C C + ++ Sbjct: 61 KGGGYRLNRAPDQYTVADILYVTEGSMAPVACLEPGAKTCDRAAYCRTLDMWKRLYELIT 120 Query: 120 DVLTQYSIECLVRNRSS 136 + +I L+ ++S Sbjct: 121 QFFSGITIADLIADKSG 137 >gi|261820558|ref|YP_003258664.1| IscR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604571|gb|ACX87057.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium wasabiae WPP163] Length = 164 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L +++ LV N+ + Sbjct: 119 DFLNNITLDELVNNKEVLN 137 >gi|89075977|ref|ZP_01162349.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34] gi|89048326|gb|EAR53905.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34] Length = 144 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G +ETVRG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I + DVV+A E + C C + +C L VL A AF Sbjct: 61 KNGGIRLGKSAESIIVGDVVRAIE-PLQIVNCSVDF---CHITPACRLKGVLADAREAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L +Y++ LV + + + + + Sbjct: 117 AELDKYTLLNLVEDNAPLLNLLS 139 >gi|296313550|ref|ZP_06863491.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768] gi|296839891|gb|EFH23829.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768] Length = 148 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|218290218|ref|ZP_03494372.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|218239693|gb|EED06884.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] Length = 140 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT TDY +RVL+Y A D ++ +IA IS L K + L + G +ETVRG Sbjct: 1 MNLTLFTDYALRVLIYTANQPDGKLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL PA I + DVV+A E+ F V CFA+ C L+ C L L +A++AF Sbjct: 61 RGGGMRLALPARDIRVGDVVRAVEDDFAVVGCFAND--SCVLLPGCRLKRALGEAVDAFL 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L +Y++ + + + + Sbjct: 119 ETLNRYTLADIAASAAPV 136 >gi|212634528|ref|YP_002311053.1| hypothetical protein swp_1693 [Shewanella piezotolerans WP3] gi|212556012|gb|ACJ28466.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 153 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTDGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A +I++ VV+A +ES C +C C S+ + Sbjct: 61 PGGGYRLGTDACEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSSQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+R R Sbjct: 119 DFLNGISLAGLMRKRD 134 >gi|168182647|ref|ZP_02617311.1| rrF2 family protein [Clostridium botulinum Bf] gi|237796007|ref|YP_002863559.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657] gi|182674079|gb|EDT86040.1| rrF2 family protein [Clostridium botulinum Bf] gi|229263788|gb|ACQ54821.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657] Length = 148 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R IT+ D+++ E ++ C C V C + K + Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNVDCCATRLLWAKIKKSLD 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 +++ +++ +V + I Sbjct: 120 NIMESTTLQDMVEDYKKIN 138 >gi|298370162|ref|ZP_06981478.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str. F0314] gi|298281622|gb|EFI23111.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str. F0314] Length = 150 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAETYNISKSHLMKVVTALVKGGFLTSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L P ++I I VV+ E + EC +C + SC L +L + AF + Sbjct: 61 GGGLKLAEPPEKINIGSVVRHLE-PMQLVECMGRDN-NCLITPSCRLADILSGGIKAFLN 118 Query: 121 VLTQYSIECLVRNRS 135 L +++ L+ + Sbjct: 119 YLDGFTLSDLLNKPT 133 >gi|261401746|ref|ZP_05987871.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970] gi|313667825|ref|YP_004048109.1| transcriptional regulator [Neisseria lactamica ST-640] gi|269208119|gb|EEZ74574.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970] gi|309379076|emb|CBX22378.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005287|emb|CBN86720.1| transcriptional regulator [Neisseria lactamica 020-06] Length = 148 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y A+++D I+ IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I I VV+ E + EC +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLASPPERINIGAVVRHLE-PMQLVECMG-PNNECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|117620851|ref|YP_855204.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562258|gb|ABK39206.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 155 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 81/144 (56%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG Sbjct: 1 MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+R+ + + I V++A E + +C C +V C L + L++A+NAF Sbjct: 61 KNGGIRMACAPETVNIGQVIRALEGNLDGIDC---GSPACHIVSVCLLKNALKEAMNAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 V+ Y+++ L+ NR ++K+F Sbjct: 118 AVMDSYTLQDLLANRDELQKVFGE 141 >gi|120600824|ref|YP_965398.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1] gi|146291147|ref|YP_001181571.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560917|gb|ABM26844.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. W3-18-1] gi|145562837|gb|ABP73772.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens CN-32] gi|319428504|gb|ADV56578.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens 200] Length = 151 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+R LMY A+ D RI++I + +S + KI+ L K G +ET+R Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKLGYLETIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +V+ E S +C K C +C L VL A++A+ Sbjct: 61 GKMGGFRLGKPACEINLGQLVRVLENSLAPIDCS---KPYCRFTPACKLKGVLAHAVDAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +VL QYS++ +V NR + + Sbjct: 118 LNVLDQYSLQDIVSNRDELLVLL 140 >gi|146277178|ref|YP_001167337.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555419|gb|ABP70032.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 144 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 82/141 (58%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CAI+ R +++A AC SE L +++ L + G + TVRGR Sbjct: 1 MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA+ I + DV + E + ECF+ + CPL SC L L AL+AF+ Sbjct: 61 CGGLALGRPAENIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALSAFYG 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L + S+ +V+ + ++++ Sbjct: 121 SLDKLSLRDMVQENTELEELL 141 >gi|238027044|ref|YP_002911275.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia glumae BGR1] gi|237876238|gb|ACR28571.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia glumae BGR1] Length = 156 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 5/147 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G VETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKAL 115 GG+R+ + +T+ +VV+A E F + CF C + C L VL A Sbjct: 61 NGGLRMNPASATLTVGEVVRAGESDFALVGCFGGEGEAIAHRGCVIEPHCRLKGVLAAAR 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142 +AFF L +++I L + + + Sbjct: 121 DAFFAELDRHTIADLTHPGAQLARALG 147 >gi|262045389|ref|ZP_06018413.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037307|gb|EEW38554.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 156 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG+ Sbjct: 17 QLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRGK 76 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA QI + DVV+ E + C + C + +C L L +A +F Sbjct: 77 NGGIRLGKPAGQIRVGDVVRDLE-PLSLVNCSSEF---CHITPACRLKQALAEAAQSFLK 132 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y + LV + K+ Sbjct: 133 ELDNYMLADLVEKNQPLYKLL 153 >gi|322417974|ref|YP_004197197.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320124361|gb|ADW11921.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 152 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT+ V++ATE + +C K +C GSC +V ++ + Sbjct: 61 PQGGYCLAKSPEDITVRAVIEATEGDTLIVDCSGRRKGECGFDGSCVTQTVWEESNSRLN 120 Query: 120 DVLTQYSIECLVRNRSSI 137 + +++ L S+ Sbjct: 121 EFFESITLKTLCDRGESL 138 >gi|308188263|ref|YP_003932394.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1] gi|308058773|gb|ADO10945.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1] Length = 147 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDYGLRALIYLAALPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL P QI I DVV+ E + +C C + +C L L A+ F Sbjct: 61 KNGGIRLGMPPRQIVIGDVVRKME-PLQLVDC-----ASCSITPACRLKQALHDAVQRFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + + +I Sbjct: 115 QELDSYTLADLVEGNTPLYEII 136 >gi|291545181|emb|CBL18290.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. 18P13] Length = 165 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++ A H D I IA+ ISE +L +I+ L + G V + RG Sbjct: 24 MKISTKGRYALRLMYELACHADEGYLNIRAIAQRQQISEKYLEQIIAMLSRGGCVISSRG 83 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL +P + T+ +++ TE C C C V NA Sbjct: 84 AQGGYRLAKPPEAYTVGMILRLTEGCLAPVPCMQEGCAPCERAECCPTQFVWEALDNAIS 143 Query: 120 DVLTQYSIECLVRN 133 V+ + ++ +V + Sbjct: 144 GVIDRITLADIVAH 157 >gi|291534433|emb|CBL07545.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis M50/1] gi|291541272|emb|CBL14383.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis XB6B4] Length = 143 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A++N P + IA IS+ +L +I+ L KA V+++RG Sbjct: 1 MRISTKGRYALRLMLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + ++ T+ +++ TE S C C + C V +K A Sbjct: 61 AQGGYILTKRPEEYTVGMILRLTEGSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAIN 119 Query: 120 DVLTQYSIECLVR 132 V+ ++ LV Sbjct: 120 QVVDSITLADLVD 132 >gi|223935874|ref|ZP_03627789.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] gi|223895475|gb|EEF61921.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] Length = 153 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R +Y +R L+ ++ D RI I++ I + FL +IL L AGIV++ RG Sbjct: 1 MKLSLRGEYALRALIVLGLNYDQSVVRIQTISDQQNIPKRFLEQILNDLKTAGIVDSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116 GG RL + DQIT+ V++ E C + K CP CG+ S++++ + Sbjct: 61 VSGGYRLGKAPDQITLATVIRYIEGPLAPVSCVSEKFYEKCSCPDESKCGIRSIMKEVRD 120 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 A +L ++ L ++ Sbjct: 121 AIVKILDGVTVAELCDRVKQLQ 142 >gi|261378411|ref|ZP_05982984.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685] gi|269145183|gb|EEZ71601.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685] Length = 148 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYAAINDDMLVNIGTIAETYGISKSHLMKVVTSLVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D I I VV+ E + EC +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDCINIGAVVRHLE-PMQLVECMG-PNNECLITPSCRLTGILGGAIKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLDKPT 133 >gi|145297732|ref|YP_001140573.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850504|gb|ABO88825.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida subsp. salmonicida A449] Length = 157 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 82/144 (56%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG Sbjct: 1 MRLTSYTDFGLRALLYLATLPQGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+R+ + + I V++A E + +C + C +V C L S L++A+NAF Sbjct: 61 KNGGIRMACTPETVNIGQVIRALEGNLDGIDC---NSPVCHIVSVCLLKSALKEAMNAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 V+ Y+++ L+ NR ++K+F Sbjct: 118 AVMDSYTLQDLLANRDELQKVFGE 141 >gi|167623502|ref|YP_001673796.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167353524|gb|ABZ76137.1| transcriptional regulator, BadM/Rrf2 family [Shewanella halifaxensis HAW-EB4] Length = 153 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES C +C C S+ N Sbjct: 61 PGGGYRLGTDACDISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSNQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ R Sbjct: 119 DFLNGISLAGLMHKRD 134 >gi|253689401|ref|YP_003018591.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259493875|sp|C6DBJ2|ISCR_PECCP RecName: Full=HTH-type transcriptional regulator iscR gi|251755979|gb|ACT14055.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 164 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++I + V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 D L +++ LV N+ + Sbjct: 119 DFLNNITLDELVNNKEVL 136 >gi|295093897|emb|CBK82988.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp. ART55/1] Length = 144 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ A D P I +A ISE +L +I L G+V++ RG Sbjct: 1 MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSVLNSGGLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT+ V++ TE C + + C C + R+ A Sbjct: 61 PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCEREARCSTIGLWRRLDKAIR 120 Query: 120 DVLTQYSIECLVRNRSS 136 DV+ +I LV R Sbjct: 121 DVVDTTTIADLVAERPE 137 >gi|332288684|ref|YP_004419536.1| iron-responsive transcriptional regulator [Gallibacterium anatis UMN179] gi|330431580|gb|AEC16639.1| iron-responsive transcriptional regulator [Gallibacterium anatis UMN179] Length = 148 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TDY +RVL+Y A H D + I +IA A ISE L K++ L K ++ ++RG+ Sbjct: 1 MKLSTFTDYNLRVLLYLAAHQDRLSTIQEIALAYNISENHLMKVIHHLAKNDLILSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R ++ + +V+ E+ + EC K C + SC L L A N+F++ Sbjct: 61 GGGIRLHRAPSELNLGKIVRLAEQKGPIVECLGD-KNKCCIAPSCRLPLALNDAFNSFYE 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L++Y++ ++ + ++++ + Sbjct: 120 TLSKYTLADVMIDGATMQPLL 140 >gi|304398596|ref|ZP_07380468.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] gi|304353807|gb|EFM18182.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] Length = 165 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++ I++ +V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKESNTISVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L ++ LV N+ + Sbjct: 119 EFLNNITLAELVNNQEIL 136 >gi|40063649|gb|AAR38438.1| rrf2 family protein [uncultured marine bacterium 582] Length = 147 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 75/141 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+K TDY +R+LM+ A+ + + QIAE L K+ Q LV+ G V +VRGR Sbjct: 1 MQLSKFTDYALRILMHLAVADKHMLTTRQIAEIHDAKYNHLAKVTQWLVRKGYVASVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + + + VV+ E + +C C L SCGLTS LR A AFF Sbjct: 61 SGGLRLAKETNDVNVGLVVRDLEGQSELVDCLRPSGGSCILAPSCGLTSALRAAQEAFFQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++ L +N + I ++ Sbjct: 121 SLDTLTLADLTKNDAPISRLL 141 >gi|154246969|ref|YP_001417927.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161054|gb|ABS68270.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 149 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +TDY +R LM+ A+ + + + I++IA A IS+ L K+ Q L G VE VRGR Sbjct: 1 MRLSVQTDYALRTLMFLAVKDGH-HSIAEIAHAYGISKNHLMKVAQRLAAEGFVEGVRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L RPA+ + + +++ E++ ECF + C + +CGL L AL AF Sbjct: 60 SGGLKLARPANALNVGSIMRIMEDTGTFVECFDAATNSCVVTPACGLRHALAGALEAFAR 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L Q++I LV + S +A Sbjct: 120 HLDQFTIADLVPDSKSYGWQLDA 142 >gi|292669568|ref|ZP_06602994.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] gi|292648777|gb|EFF66749.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] Length = 162 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+H + + IA+ ISE +L +++ PL +AG+VE+VRG Sbjct: 16 MKLSTKGRYSVTALYELALHYGEGVVPLKTIAKTQGISENYLEQLMAPLRRAGLVESVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115 +GG L P +++TI ++ A E + +C + C G+C + + Sbjct: 76 AQGGYTLALPPEEVTIGQIITAVEGPIALVDCLLTSAEAVDQSCVRAGNCVTRQIWEEVC 135 Query: 116 NAFFDVLTQYSIECLVRN 133 + +VL ++ L+R Sbjct: 136 DNINNVLNNIALSDLMRR 153 >gi|310829310|ref|YP_003961667.1| RRF2 family protein [Eubacterium limosum KIST612] gi|308741044|gb|ADO38704.1| RRF2 family protein [Eubacterium limosum KIST612] Length = 135 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + A + + P I +IAE S+ ++ ++ L KAG++ ++RG Sbjct: 1 MRLSTKGRYGVLAMYELACRYGNGPVSIKEIAEKQNFSDSYMEQLFSTLKKAGLIVSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118 +GG L R I++ ++++A E +A+C + C G C + + ++ Sbjct: 61 AKGGYILSREPRDISVGEIIRALEGPIELADCVGGPEGYVCRKSGECVTRGLWMEIRDSI 120 Query: 119 FDVLTQYSIECLVRN 133 +++ S++ L+ N Sbjct: 121 NNIIDNRSLQDLMDN 135 >gi|222150933|ref|YP_002560086.1| hypothetical protein MCCL_0683 [Macrococcus caseolyticus JCSC5402] gi|222120055|dbj|BAH17390.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 138 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY A ++ +I +IA IS+ L K++ L G +ET RGR Sbjct: 1 MKLTLYSDYSLRVLMYIARQ-EHRVQIDEIANFYGISKNHLTKVVNNLATLGYIETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ ++I I +++ TEE F + ECF CP+ G CGL VL +AL A+ Sbjct: 60 GGGIRIKMAPEEINIGALIRKTEEHFNLVECFDRETNTCPIAGICGLQGVLSEALGAYLS 119 Query: 121 VLTQYSIECLVRNRS 135 VL Y++ ++ N+ Sbjct: 120 VLDSYTLNDILHNKR 134 >gi|307132078|ref|YP_003884094.1| Fe-S cluster-containing transcription factor [Dickeya dadantii 3937] gi|306529607|gb|ADM99537.1| Fe-S cluster-containing transcription factor [Dickeya dadantii 3937] Length = 164 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDAAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L +++ LV N+ + Sbjct: 119 EFLNNITLDELVNNKEIL 136 >gi|161870639|ref|YP_001599812.1| hypothetical protein NMCC_1709 [Neisseria meningitidis 053442] gi|161596192|gb|ABX73852.1| nitric oxide-sensitive repressor [Neisseria meningitidis 053442] Length = 147 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|225075994|ref|ZP_03719193.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens NRL30031/H210] gi|224952709|gb|EEG33918.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens NRL30031/H210] Length = 152 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNISTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I VV+ E V EC +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADVPEKINIGAVVRHLE-PMQVVECMG-ENNECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLVRNRS 135 L QYS++ L+ + Sbjct: 119 HLDQYSLQDLLDKPT 133 >gi|242240170|ref|YP_002988351.1| DNA-binding transcriptional regulator IscR [Dickeya dadantii Ech703] gi|242132227|gb|ACS86529.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech703] Length = 164 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDASEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L +++ LV N+ + Sbjct: 119 EFLNNITLDELVNNKEIL 136 >gi|15640766|ref|NP_230396.1| hypothetical protein VC0747 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591450|ref|ZP_01678726.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121729724|ref|ZP_01682165.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147673230|ref|YP_001216232.1| hypothetical protein VC0395_A0276 [Vibrio cholerae O395] gi|153216250|ref|ZP_01950350.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153800571|ref|ZP_01955157.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153817260|ref|ZP_01969927.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822734|ref|ZP_01975401.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153824617|ref|ZP_01977284.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153829399|ref|ZP_01982066.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080926|ref|YP_002809477.1| hypothetical protein VCM66_0705 [Vibrio cholerae M66-2] gi|254225012|ref|ZP_04918626.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254285465|ref|ZP_04960429.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254847884|ref|ZP_05237234.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744554|ref|ZP_05418505.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101] gi|262161312|ref|ZP_06030423.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1] gi|262168805|ref|ZP_06036500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27] gi|262190470|ref|ZP_06048721.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93] gi|262402868|ref|ZP_06079429.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586] gi|297581146|ref|ZP_06943070.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499120|ref|ZP_07008927.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655192|gb|AAF93912.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546701|gb|EAX56880.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121628541|gb|EAX61024.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114395|gb|EAY33215.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124123860|gb|EAY42603.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125622399|gb|EAZ50719.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126512176|gb|EAZ74770.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519765|gb|EAZ76988.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146315113|gb|ABQ19652.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148875119|gb|EDL73254.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149741835|gb|EDM55864.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150424327|gb|EDN16264.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008814|gb|ACP05026.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012571|gb|ACP08781.1| conserved hypothetical protein [Vibrio cholerae O395] gi|254843589|gb|EET22003.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737585|gb|EET92979.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101] gi|262022923|gb|EEY41629.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27] gi|262029062|gb|EEY47715.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1] gi|262033642|gb|EEY52131.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93] gi|262351650|gb|EEZ00783.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586] gi|297534462|gb|EFH73299.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297543453|gb|EFH79503.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 188 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 16 MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + I+I V+ A +ES +C + K DC C ++ R + Sbjct: 76 PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRIT 133 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 134 DFLNNITLGELMMDNEVLE 152 >gi|291547327|emb|CBL20435.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. SR1/5] Length = 144 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A + P R+ +A+ IS+ +L +I+ L KAG V +VRG Sbjct: 1 MRISTRGRYALRLMLDLATNYTGKPIRLKDVAKRQEISDKYLEQIISILNKAGFVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + D+ TI +++ TE S EC + C +C + +K +A Sbjct: 61 PQGGYALQQTPDKYTIGMILRLTEGSLSPVECLDDNGAICDREENCVTQILWKKLDDAIK 120 Query: 120 DVLTQYSIECLVRNRS 135 V+ ++E L+ ++ Sbjct: 121 GVVDHITLEDLMNWQA 136 >gi|152978539|ref|YP_001344168.1| BadM/Rrf2 family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150840262|gb|ABR74233.1| transcriptional regulator, BadM/Rrf2 family [Actinobacillus succinogenes 130Z] Length = 154 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+ + P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALFGTNGPVTLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L D+I+I ++ A E+ V +C K +C C S+ + + Sbjct: 61 PGGGYQLGHSMDKISIGMIIAAVNENIAVTKCLG--KGNCQNGTECLTHSLWAELSHRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV+ S +K Sbjct: 119 DFLDKITLAELVKKHHSKQK 138 >gi|90581369|ref|ZP_01237165.1| hypothetical protein VAS14_18794 [Vibrio angustum S14] gi|90437479|gb|EAS62674.1| hypothetical protein VAS14_18794 [Vibrio angustum S14] Length = 144 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G +ETVRG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I + DVV+A E + C C + +C L VL A AF Sbjct: 61 KNGGIRLGKSAESIIVGDVVRAIE-PLQIVNCSLDF---CHITPACRLKGVLADAREAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L +Y++ LV + + + + + Sbjct: 117 AELDKYTLLTLVEDNAPLLNLLS 139 >gi|157376007|ref|YP_001474607.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318381|gb|ABV37479.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis HAW-EB3] Length = 153 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A +I++ VV+A +ES C +C C S+ Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ R Sbjct: 119 DFLNGISLAGLMNKRD 134 >gi|187778845|ref|ZP_02995318.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC 15579] gi|187772470|gb|EDU36272.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC 15579] Length = 148 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R IT+ D+++ E ++ C C V C + K + Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCGNVDCCATRLLWAKIKKSLD 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +++ +++ +V + I Sbjct: 120 NIMESTTLQDMVEDYRKINP 139 >gi|154243891|ref|YP_001409464.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154163013|gb|ABS70228.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 145 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 67/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R LM+ A + +IA+A IS L K+++ L AG+V T RG Sbjct: 1 MRLTSFTDFGLRALMWLAGDPERVFTTDEIAQAFGISRNHLTKVIRELAAAGVVTTQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R AD IT+ ++V+ E + ECF + C L C L L+ A AF Sbjct: 61 GGGFRLARSADDITLGEIVRLLEARSALVECFRADGGACALTPGCRLKGKLKAAREAFLC 120 Query: 121 VLTQYSIEC 129 L + ++ Sbjct: 121 ELDRTTLAE 129 >gi|163749695|ref|ZP_02156941.1| Rrf2 family protein [Shewanella benthica KT99] gi|161330508|gb|EDQ01466.1| Rrf2 family protein [Shewanella benthica KT99] Length = 167 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 15 MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRHGLVSSVRG 74 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES V C DC C S+ Sbjct: 75 PGGGYRLGADAVDISVGMVVRAVDESVDVTRCKGQG--DCQNGTRCLTHSLWGDLSKQIS 132 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ R Sbjct: 133 DFLNGISLAGLMNKRD 148 >gi|59801857|ref|YP_208569.1| hypothetical protein NGO1519 [Neisseria gonorrhoeae FA 1090] gi|194099329|ref|YP_002002430.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945] gi|239999588|ref|ZP_04719512.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02] gi|240014762|ref|ZP_04721675.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI18] gi|240017211|ref|ZP_04723751.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA6140] gi|240081152|ref|ZP_04725695.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19] gi|240113364|ref|ZP_04727854.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11] gi|240116288|ref|ZP_04730350.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18] gi|240118576|ref|ZP_04732638.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1] gi|240121285|ref|ZP_04734247.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID24-1] gi|240124119|ref|ZP_04737075.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332] gi|240126265|ref|ZP_04739151.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679] gi|240128788|ref|ZP_04741449.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035] gi|254494301|ref|ZP_05107472.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291] gi|260439895|ref|ZP_05793711.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2] gi|268595398|ref|ZP_06129565.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02] gi|268597263|ref|ZP_06131430.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19] gi|268599439|ref|ZP_06133606.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11] gi|268601953|ref|ZP_06136120.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18] gi|268604283|ref|ZP_06138450.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1] gi|268682742|ref|ZP_06149604.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332] gi|268684848|ref|ZP_06151710.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679] gi|268687169|ref|ZP_06154031.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035] gi|291043171|ref|ZP_06568894.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2] gi|293398504|ref|ZP_06642682.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62] gi|59718752|gb|AAW90157.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934619|gb|ACF30443.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945] gi|226513341|gb|EEH62686.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291] gi|268548787|gb|EEZ44205.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02] gi|268551051|gb|EEZ46070.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19] gi|268583570|gb|EEZ48246.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11] gi|268586084|gb|EEZ50760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18] gi|268588414|gb|EEZ53090.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1] gi|268623026|gb|EEZ55426.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332] gi|268625132|gb|EEZ57532.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679] gi|268627453|gb|EEZ59853.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035] gi|291012777|gb|EFE04760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2] gi|291610975|gb|EFF40072.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62] gi|317164836|gb|ADV08377.1| hypothetical protein NGTW08_1415 [Neisseria gonorrhoeae TCDC-NG08107] Length = 147 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y A+++D I+ IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I I VV+ E + EC +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPERINIGAVVRHLE-PMQLVECMG-PNNECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|215512187|gb|ACJ68081.1| NsrR [Moraxella catarrhalis O35E] gi|215512191|gb|ACJ68084.1| NsrR [Moraxella catarrhalis 7169] gi|215512196|gb|ACJ68088.1| NsrR [Moraxella catarrhalis] gi|326561869|gb|EGE12204.1| transcriptional regulator NsrR [Moraxella catarrhalis 7169] gi|326563304|gb|EGE13571.1| transcriptional regulator NsrR [Moraxella catarrhalis 46P47B1] gi|326563419|gb|EGE13684.1| transcriptional regulator NsrR [Moraxella catarrhalis 12P80B1] gi|326565958|gb|EGE16119.1| transcriptional regulator NsrR [Moraxella catarrhalis 103P14B1] gi|326569208|gb|EGE19269.1| transcriptional regulator NsrR [Moraxella catarrhalis BC7] gi|326571881|gb|EGE21886.1| transcriptional regulator NsrR [Moraxella catarrhalis BC8] gi|326575393|gb|EGE25318.1| transcriptional regulator NsrR [Moraxella catarrhalis 101P30B1] gi|326577989|gb|EGE27853.1| transcriptional regulator NsrR [Moraxella catarrhalis O35E] Length = 177 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--------------------- 97 G+ GG+RL I + ++V+ TE FFV CFA Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120 Query: 98 --------DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 C + +C L V +A AF VL Y++ ++ N ++ + Sbjct: 121 LSVGQPAMSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELRHCLS 173 >gi|90410859|ref|ZP_01218873.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90328072|gb|EAS44383.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 172 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A+ I + V+ A +ES +C K DC C ++ + Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADCQGGVRCLTHTLWHDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+++ + Sbjct: 119 GFLNNITLGELMKDNN 134 >gi|291562648|emb|CBL41464.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SS3/4] Length = 143 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RVL+ A H D + A ISE +L I++ LVKA ++E VRG Sbjct: 1 MMVSTKGRYALRVLIDLAEHQTDGYIPLKDTAARQEISEKYLEGIIKILVKAKLLEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + +Q T+ +++ TE S C DCP +GSC + + Sbjct: 61 KGGGYRLTKAPEQYTVGSILRLTENSMAPVACLEPGSTDCPRMGSCKTLPLWQGLDKVVN 120 Query: 120 DVLTQYSIECLVRN 133 + L +I LV+N Sbjct: 121 EYLDGVTIADLVQN 134 >gi|262275147|ref|ZP_06052958.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia hollisae CIP 101886] gi|262221710|gb|EEY73024.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia hollisae CIP 101886] Length = 144 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R LMY A + I+ + E +S + KI+ + +AG VE VRG Sbjct: 1 MQLTSFTDYGLRALMYLAMLPPGELTSITVVTEKYGVSRNHMVKIIHRMSQAGFVEAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA+ I I DV+++ E + C +C + +C L + + KAL AF Sbjct: 61 KNGGIRLGKPAELIVIGDVIRSLE-PLQLVNCA---PQNCHITPACRLKTAIAKALTAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + +Y++ +V ++ + Sbjct: 117 AEMDKYTLHDMVSGNDDLQHLL 138 >gi|134295879|ref|YP_001119614.1| BadM/Rrf2 family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139036|gb|ABO54779.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia vietnamiensis G4] Length = 171 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A +S+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYALRVMLYLAVRGDGLATIQEISDAYGVSKNHLMKVVQQLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 GG+RL + ++TI VV+ATE F + CFA + C + C L VL A +A Sbjct: 61 NGGLRLFPASLKLTIGQVVRATENDFALVGCFAPDGGESRGCVIQPQCQLKGVLAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L S + + Sbjct: 121 FFAELDRHTIGELSVPASPLVALLG 145 >gi|54307944|ref|YP_128964.1| transcriptional regulator [Photobacterium profundum SS9] gi|81615497|sp|Q6LU63|ISCR_PHOPR RecName: Full=HTH-type transcriptional regulator iscR gi|46912370|emb|CAG19162.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 172 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A+ I + V+ A +ES +C K DC C ++ + Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADCQGGVRCLTHTLWHDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+R+ + Sbjct: 119 GFLNNITLGELMRDNN 134 >gi|253682230|ref|ZP_04863027.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum D str. 1873] gi|253561942|gb|EES91394.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum D str. 1873] Length = 144 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ AI+ ++ P I IA ISEL+L ++ PL KA ++++VRG Sbjct: 1 MKLSTKGRYGVRAMVDLAINYSESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ D++ E ++ C S + C + C + K N+ Sbjct: 61 AQGGYVLSKHPKEISVSDIIDVLEGPIEISSCIDSGE--CNNMEVCPSRLLWEKIKNSID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V +++ + + +K Sbjct: 119 EVTKSITLQDMANDYKRLK 137 >gi|171058160|ref|YP_001790509.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775605|gb|ACB33744.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii SP-6] Length = 165 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LMY + I+++A+A ISE L KI L AG +ETVRG+ Sbjct: 1 MRLTTMTDYALRLLMYVGQRPERLCTIAEVAQAYGISEAHLMKITHQLGLAGWIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL QI + ++V++ E F + EC AS C L G C LT + AL AF + Sbjct: 61 GGGMRLALEPAQINLGELVRSVEPDFALVECLASGNA-CSLTGRCRLTGIFDDALAAFME 119 Query: 121 VLTQYSIECLV 131 L ++ ++ Sbjct: 120 KLDARTLAEVL 130 >gi|127514738|ref|YP_001095935.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica PV-4] gi|126640033|gb|ABO25676.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica PV-4] Length = 150 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L K G ++TVR Sbjct: 1 MQLTRYTDFGIRTLMYLALSPERETLFRIAEITEVFDLSANHVSKIVHHLGKEGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L +PADQI I +V+ E S +C K C +C L VL +A++A+ Sbjct: 61 GKAGGFKLGKPADQINIGVLVRTLENSLSPIDCS---KPYCRFSPACQLKGVLAEAVDAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL +YS+ +V NR ++ + Sbjct: 118 LAVLDKYSLADVVSNRDELRALL 140 >gi|160895037|ref|ZP_02075811.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50] gi|156863468|gb|EDO56899.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50] Length = 156 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 1/136 (0%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + Y +R+++Y A + N P I +A+ IS+ +L +I+ L G+V +VRG Sbjct: 14 KISTKGRYALRLMIYIAANSNGKPVSIKDVAKNEDISDKYLEQIISILNSGGLVRSVRGP 73 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L + + IT+ V++ TE + C +C C ++ ++ +A Sbjct: 74 QGGYLLRKAPEDITVGAVLRLTEGTLAPVACVEEDAPECERESICSTYNLWKQLYSAICS 133 Query: 121 VLTQYSIECLVRNRSS 136 V+ +I L +R Sbjct: 134 VVDTTTIADLCNSRPE 149 >gi|319639116|ref|ZP_07993872.1| nitric oxide-sensitive repressor [Neisseria mucosa C102] gi|317399593|gb|EFV80258.1| nitric oxide-sensitive repressor [Neisseria mucosa C102] Length = 152 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I VV+ E V EC + +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADVPEKINIGAVVRHLE-PMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLVRNRS 135 L QYS++ L+ + Sbjct: 119 HLDQYSLQDLLDKPT 133 >gi|241760757|ref|ZP_04758848.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens SK114] gi|241318654|gb|EER55206.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens SK114] Length = 152 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA+ IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDSLVNISTIAKTYNISKSHLMKVVTSLVKGGFLVSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I I VV+ E V EC + +C + SC LT ++ A+ AFF+ Sbjct: 61 GGGLRLADVPEKINIGAVVRHLE-PMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118 Query: 121 VLTQYSIECLVRNRS 135 L QYS++ L+ + Sbjct: 119 HLDQYSLQDLLDKPT 133 >gi|326576519|gb|EGE26427.1| transcriptional regulator NsrR [Moraxella catarrhalis CO72] Length = 177 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--------------------- 97 G+ GG+RL I + ++V+ TE FFV CFA Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDDVMADNLIKIKTLD 120 Query: 98 --------DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 C + +C L V +A AF VL Y++ ++ N ++ + Sbjct: 121 LSVGQPALSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELRHCLS 173 >gi|91774995|ref|YP_544751.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708982|gb|ABE48910.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus flagellatus KT] Length = 149 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD G+RVLMY + H + P IS+IA I L K++ L K G ++T RG Sbjct: 1 MQLTKFTDLGLRVLMYVSQHERNKPITISEIATQFNIPRNHLIKVVTFLNKTGWIQTTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL + + V++ E S + C + CPL G CGL L LNAF+ Sbjct: 61 PNGGLRLGTDPASLHLGHVIRVLEGSASLVNC---QEPPCPLAGQCGLKHALDLGLNAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 D + Y+++ ++RNR++ Sbjct: 118 DYMDTYTLQDVIRNRTA 134 >gi|77463446|ref|YP_352950.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462302|ref|YP_001043416.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639304|ref|YP_002525566.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558324|ref|ZP_08412646.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] gi|77387864|gb|ABA79049.1| transcriptional regulator / transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126103966|gb|ABN76644.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|221160085|gb|ACM01065.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] gi|332276036|gb|EGJ21351.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] Length = 144 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 81/141 (57%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CAI+ R +++A AC SE L +++ L + G + TVRGR Sbjct: 1 MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA++I + DV + E + ECF+ + CPL SC L L AL AF+ Sbjct: 61 CGGLALGRPAEKIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALAAFYG 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L + S+ +V+ + ++ + Sbjct: 121 TLDKLSLRDMVQENTELEDLL 141 >gi|270158902|ref|ZP_06187558.1| rrf2 family protein [Legionella longbeachae D-4968] gi|289166311|ref|YP_003456449.1| DNA-binding transcriptional regulator [Legionella longbeachae NSW150] gi|269987241|gb|EEZ93496.1| rrf2 family protein [Legionella longbeachae D-4968] gi|288859484|emb|CBJ13439.1| DNA-binding transcriptional regulator [Legionella longbeachae NSW150] Length = 148 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + + I I +A IS + KI+ L K G+++T RG+ Sbjct: 1 MQLTQFTDYSLRALIYITLRKES-CTIKDITDAYTISNNHMVKIIHNLAKLGLIKTSRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + I + ++ E F + CF K +C + C L +L +A AF Sbjct: 60 GGGILIAVQPETINLGKLIAQLEPHFDLVPCFNKEKANCCIAPVCRLKGILHEAQTAFMK 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ ++ N + + N Sbjct: 120 VLERYTLADVLHNPKELSVLLN 141 >gi|23097747|ref|NP_691213.1| hypothetical protein OB0292 [Oceanobacillus iheyensis HTE831] gi|81747143|sp|Q8ETG9|NSRR_OCEIH RecName: Full=HTH-type transcriptional regulator nsrR gi|22775971|dbj|BAC12248.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 147 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+L K TDY +RVL++ + +D I +IAE IS+ L K++ L K +V T+RG Sbjct: 1 MNLKKYTDYALRVLIFTGLKSDQELANIKEIAEVYQISQEHLRKVVHELTKMELVVTIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L +PA +I I +++ E F + ECF C + C L V+ KAL AFF Sbjct: 61 RNGGIKLAKPASEINIGLLIRQLENDFVLLECFDKGTNHCVISPGCTLKHVINKALVAFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL +Y++E L++N + + Sbjct: 121 KVLEEYTLEDLIKNEEELLALMG 143 >gi|89900652|ref|YP_523123.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345389|gb|ABD69592.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 154 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+LMY H + IS++A A ISE L KI L AG +ETVRG+ Sbjct: 1 MRLTTMSDYAMRLLMYVGQHPERLCTISEVARAYEISEAHLTKITHQLALAGWLETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL I + VV++ E F + EC S C L SC LT ++ AL +F Sbjct: 61 GGGMRLAAAPQDIGLGAVVRSMEPDFTIVECLTSDTT-CQLTSSCHLTGIINGALQSFMQ 119 Query: 121 VLTQYSIECLVRNRSS 136 L +Y++ L+ + Sbjct: 120 YLDRYTLADLLAPGTE 135 >gi|302672152|ref|YP_003832112.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396625|gb|ADL35530.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus B316] Length = 135 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+RV+ A H N + IA I+ +L +I+ L KAG +E++RG Sbjct: 1 MRISTKGRYGLRVMTDLAAHYNGEYISLKDIAVRLGITVKYLEQIVTALNKAGYLESMRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + + + D+++ E +F EC A +CPL SC + + + Sbjct: 61 TNGGHRLAKDPSEYVVGDILRVMEGNFSPVECAAEGMSECPLSDSCASLNFWKGLDDVVN 120 Query: 120 DVLTQYSIECLVRNR 134 + Y+++ LV+ + Sbjct: 121 QYIDSYTLDQLVKQK 135 >gi|28210751|ref|NP_781695.1| RRF2 family protein [Clostridium tetani E88] gi|28203189|gb|AAO35632.1| RRF2 protein family [Clostridium tetani E88] Length = 144 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A++ D P I I+E ISE +L ++ L KA +++++RG Sbjct: 1 MKLSTKGRYGVRAMIDLALNYGDIPISIKSISERQNISEYYLEQLFATLRKADLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R I+I ++++ E ++ C + + C + SC + + + Sbjct: 61 AQGGYLLSREPKDISIAEIIETLEGPVELSNCVSQGE--CENMDSCSTRLLWVRIKESID 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 +V +++ +V + + G Sbjct: 119 NVTKTTTLQDMVDDYYKLNSCKGKG 143 >gi|229814919|ref|ZP_04445257.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM 13280] gi|229809406|gb|EEP45170.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM 13280] Length = 146 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H +D + +IA ISE +L IL LV+ G++ +RG Sbjct: 1 MLVSTKGRYALRVMIDLAEHRSDGRTPLRKIAARQGISEKYLENILTTLVRHGLLSGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L R + TI +V++ TE S C C C V R+ + Sbjct: 61 KGGGYCLTREPEDFTIGEVLRLTEGSLCPVACLEHGHDGCDRAEHCRTVRVWRELDSLIE 120 Query: 120 DVLTQYSIECLVRNRS 135 + L ++ LVR+ S Sbjct: 121 NYLNGVTLADLVRDES 136 >gi|37678938|ref|NP_933547.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|326423712|ref|NP_759435.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio vulnificus CMCP6] gi|37197680|dbj|BAC93518.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] gi|319999071|gb|AAO08962.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio vulnificus CMCP6] Length = 183 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 16 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I+I V+ A +ES +C K DC C ++ R + Sbjct: 76 PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 133 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + I+ Sbjct: 134 DFLNNITLGELMSDNEVIE 152 >gi|224825697|ref|ZP_03698801.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224601921|gb|EEG08100.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 150 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 77/142 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+MY A+ + I++IA+A IS L K++ L + G + TVRG+ Sbjct: 1 MRLTAFTDYCLRVMMYSALAGERLVTINEIAQAYGISASHLTKVVFFLGQHGYLTTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL Q+ + +V+A E + ECF C + +C L +VL A AF+ Sbjct: 61 GGGMRLADDPQQVNLGKLVRAAETDNVLVECFDPQHSQCRIASACRLMNVLHAAQEAFYG 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L+++++ L+ + + + Sbjct: 121 ELSRHTLADLLVQPAGLGRALG 142 >gi|323486700|ref|ZP_08092021.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323692161|ref|ZP_08106404.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323400081|gb|EGA92458.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323503735|gb|EGB19554.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 145 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ A+ D RI I+ ISE +L +I+ L KAG V +VRG Sbjct: 1 MKVSTKGRYALRMMLDLALQGDEVVRIKDISLRQEISEKYLEQIVSVLKKAGYVNSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116 +GG L + T+ +++ TE S C C C + + Sbjct: 61 QGGYCLAGKPQEYTVGMILRLTEGSMAPVACVDTRMDGRGNTCSRAPGCTALKLWTMVDD 120 Query: 117 AFFDVLTQYSIECLVRNRSS 136 A V+ + ++ +V+ Sbjct: 121 AVNGVIDKVTLADMVQWERE 140 >gi|121635429|ref|YP_975674.1| hypothetical protein NMC1725 [Neisseria meningitidis FAM18] gi|120867135|emb|CAM10902.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|254672733|emb|CBA06710.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|325198879|gb|ADY94335.1| transcriptional repressor nsrR [Neisseria meningitidis G2136] Length = 147 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E + EC S+ +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLATPPDRINIGSVVRHLE-PMQLVECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|110834981|ref|YP_693840.1| transcriptional regulator [Alcanivorax borkumensis SK2] gi|110648092|emb|CAL17568.1| Transcriptional regulator, putative [Alcanivorax borkumensis SK2] Length = 143 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y ++ +D P I +IA+A IS + K+ Q LV+ G V+++RG Sbjct: 1 MQLTTHTDYALRTLIYLSLRHDKLPTTIQEIADAYHISNNHVAKVAQTLVQLGYVQSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + +PA++I + ++++ TE + + +CF + CP+ +C L + L KA AF Sbjct: 61 RSGGLVMAKPANEINVGELIRQTE-NLKLLDCFGTES-SCPIDPACKLKNALGKAQAAFL 118 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L QY++ N ++ + Sbjct: 119 QTLDQYNLADFTDNSDELRILL 140 >gi|160879964|ref|YP_001558932.1| BadM/Rrf2 family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428630|gb|ABX42193.1| transcriptional regulator, BadM/Rrf2 family [Clostridium phytofermentans ISDg] Length = 143 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y IRVL+ A HN+ + IA ISE +L I+ L K ++ ++RG Sbjct: 1 MKISTKGRYAIRVLIDLAEHNNGEFITLMDIAGRQEISEKYLEAIVSILSKNDLLISLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + +Q T+ +++ TE S C +C C + + Sbjct: 61 KGGGYKLAKAPEQYTVGSILRLTEGSLAPVSCLEKTPNNCTRATECRTLHMWEEFYKLTN 120 Query: 120 DVLTQYSIECLVRNRSS 136 D +I LV+ S Sbjct: 121 DYFDGITIADLVKKNDS 137 >gi|218768796|ref|YP_002343308.1| hypothetical protein NMA2048 [Neisseria meningitidis Z2491] gi|121052804|emb|CAM09151.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|319411035|emb|CBY91435.1| putative HTH-type transcriptional regulator [Neisseria meningitidis WUE 2594] Length = 147 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P ++I I VV+ E + EC +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLASPPERINIGAVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|290476020|ref|YP_003468917.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus bovienii SS-2004] gi|289175350|emb|CBJ82153.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus bovienii SS-2004] Length = 164 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I + +V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGRNAGNIFVAEVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S+E LV+N+ + Sbjct: 119 SFLSSISLEELVKNQEVL 136 >gi|289423544|ref|ZP_06425345.1| RRF2-family transcriptional regulator [Peptostreptococcus anaerobius 653-L] gi|289156046|gb|EFD04710.1| RRF2-family transcriptional regulator [Peptostreptococcus anaerobius 653-L] Length = 152 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ + A+ P + IA+ IS+ +L +I L KA +V++VRG Sbjct: 1 MKLSTKGKYGLKAMFELALSKTGEPVSLKHIAKQQNISDQYLEQIFSSLKKAKLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +IT+ D++K E +C K C SC V K ++ Sbjct: 61 AQGGYMLSKDPKEITVADILKVLEGDMAFTDCLLD-KDACENFNSCATKYVWAKIKDSIE 119 Query: 120 DVLTQYSIECLVRNRSS 136 V S++ +V + S Sbjct: 120 QVTMAISLQDMVDDYES 136 >gi|313905754|ref|ZP_07839113.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469360|gb|EFR64703.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 173 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R YG+R L+ A + D IA+ ISE +L ++++ L K+G+V +VRG Sbjct: 1 MKLTTRGRYGLRALIDLAENQDGGAVSTQSIAQRQDISESYLEQLIRMLKKSGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD+I++ DV+++ E S EC A DC C V ++ + Sbjct: 61 AGGGYRLSRAADEISVGDVLRSLEGSLEAVECPAIVGDDCSSADECVTKIVWKRINDGIA 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 + I LV +K Sbjct: 121 QAVDSIMISELVDESMRLK 139 >gi|187736491|ref|YP_001878603.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia muciniphila ATCC BAA-835] gi|187426543|gb|ACD05822.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia muciniphila ATCC BAA-835] Length = 147 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A H D + +I+ ++ +L +I+ L+KAG V++ RG Sbjct: 2 MKVSTRGRYALRLMIDLAQHRDEGYISLKEISARQDVTVRYLEQIIAILLKAGFVQSFRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R + T D++K TE S C ASH+ CP C R Sbjct: 62 KAGGYRLSRHPREYTTEDILKLTEGSLLPLSCTASHENPCPRAAGCATLPFWRGLQQVIE 121 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 + L + ++E L + I + AG Sbjct: 122 NYLRRVTLEDLAEQQKEIGCDYGAG 146 >gi|320157286|ref|YP_004189665.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O] gi|81844780|sp|Q8DEY6|ISCR_VIBVU RecName: Full=HTH-type transcriptional regulator iscR gi|119371155|sp|Q7MNG3|ISCR_VIBVY RecName: Full=HTH-type transcriptional regulator iscR gi|319932598|gb|ADV87462.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O] Length = 168 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I+I V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + I+ Sbjct: 119 DFLNNITLGELMSDNEVIE 137 >gi|328545191|ref|YP_004305300.1| transcriptional regulator superfamily [polymorphum gilvum SL003B-26A1] gi|326414933|gb|ADZ71996.1| Transcriptional regulator superfamily [Polymorphum gilvum SL003B-26A1] Length = 137 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 59/128 (46%), Positives = 91/128 (71%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA + + P++++ IA + +SE LFKI++ LV G+++T+RGR GG+ L RPA++IT Sbjct: 1 MYCAANPERPSKVADIAASFAMSETHLFKIMKVLVDGGLIKTIRGRNGGIVLARPANKIT 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I +VV+ EESF++AECF S + DCP++ +CG VL +AL AF DVL +IE + NR Sbjct: 61 IGEVVRVAEESFYLAECFNSGRKDCPILTTCGFNGVLHEALEAFMDVLDSKTIEDIAENR 120 Query: 135 SSIKKIFN 142 ++K+ + Sbjct: 121 KDLRKLLH 128 >gi|304396949|ref|ZP_07378829.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] gi|304355745|gb|EFM20112.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] Length = 147 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + I+++ +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL PA QI I DVV+ E + +C C + +C L L A+ F Sbjct: 61 KNGGIRLGMPARQIVIGDVVRKME-PLQLVDC-----ASCSITPACRLKQALHDAVQRFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + + +I Sbjct: 115 QELDNYTLADLVEGNTPLYEII 136 >gi|15676349|ref|NP_273485.1| hypothetical protein NMB0437 [Neisseria meningitidis MC58] gi|254805531|ref|YP_003083752.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|7225662|gb|AAF40875.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|254669073|emb|CBA07596.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|308388639|gb|ADO30959.1| hypothetical protein NMBB_0481 [Neisseria meningitidis alpha710] gi|316984950|gb|EFV63906.1| rrf2 family protein [Neisseria meningitidis H44/76] gi|325128852|gb|EGC51711.1| transcriptional repressor nsrR [Neisseria meningitidis N1568] gi|325130805|gb|EGC53539.1| transcriptional repressor nsrR [Neisseria meningitidis OX99.30304] gi|325132983|gb|EGC55660.1| transcriptional repressor nsrR [Neisseria meningitidis M6190] gi|325134903|gb|EGC57536.1| transcriptional repressor nsrR [Neisseria meningitidis M13399] gi|325137004|gb|EGC59601.1| transcriptional repressor nsrR [Neisseria meningitidis M0579] gi|325138971|gb|EGC61521.1| transcriptional repressor nsrR [Neisseria meningitidis ES14902] gi|325140951|gb|EGC63458.1| transcriptional repressor nsrR [Neisseria meningitidis CU385] gi|325142952|gb|EGC65310.1| transcriptional repressor nsrR [Neisseria meningitidis 961-5945] gi|325144975|gb|EGC67258.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240013] gi|325199624|gb|ADY95079.1| transcriptional repressor nsrR [Neisseria meningitidis H44/76] gi|325202752|gb|ADY98206.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240149] gi|325203544|gb|ADY98997.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240355] gi|325205505|gb|ADZ00958.1| transcriptional repressor nsrR [Neisseria meningitidis M04-240196] gi|325208748|gb|ADZ04200.1| transcriptional repressor nsrR [Neisseria meningitidis NZ-05/33] Length = 147 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|260881734|ref|ZP_05405118.2| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella multacida DSM 20544] gi|260848283|gb|EEX68290.1| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella multacida DSM 20544] Length = 154 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 5/144 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + L A+ + + IA + +SE +L +++ PL +AGIV++VRG Sbjct: 5 MKISTKGRYSVTALYELALRYGEGAVSLKSIATSQGLSENYLEQLMAPLRRAGIVKSVRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115 +GG L R +ITI +++ E + +C S + C +C V K Sbjct: 65 AQGGYMLARDPKEITIGEIITTVEGPIALVDCLLTSAESAEQPCDRACACVTRGVWEKVC 124 Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139 ++ +VL ++ L + K Sbjct: 125 DSISNVLNHITLYDLCTDHPEQAK 148 >gi|304386705|ref|ZP_07368978.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091] gi|261391951|emb|CAX49413.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] gi|304339220|gb|EFM05301.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091] Length = 147 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D+I I VV+ E + EC S+ +C + SC LT +L A+ +FF Sbjct: 61 GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 YLDGFTLQDLLNKPT 133 >gi|37527164|ref|NP_930508.1| DNA-binding transcriptional regulator IscR [Photorhabdus luminescens subsp. laumondii TTO1] gi|81833923|sp|Q7N223|ISCR_PHOLL RecName: Full=HTH-type transcriptional regulator iscR gi|36786598|emb|CAE15658.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 164 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I + +V+ A +ES C C C ++ R + Sbjct: 61 PGGGYLLGKDASEIVVAEVIFAVDESVDATRCQGREG--CQGGDRCLTHALWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S+E LV N+ + Sbjct: 119 GFLSSISLEELVNNQEVL 136 >gi|74317181|ref|YP_314921.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056676|gb|AAZ97116.1| Iron-sulphur cluster assembly transcription factor IscR [Thiobacillus denitrificans ATCC 25259] Length = 153 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I+E IS +L ++ L + +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMLDLALRGGKNPVTLAGISERQDISLSYLEQLFSRLRRHALVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +++ D+++A +E +C K +C C + + + Sbjct: 61 PGGGYYLAKPLADVSVADIIRAVDEPIDATQC--GGKENCHDEHRCLTHDLWVGLNSHIY 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L ++ LV + K+ Sbjct: 119 DYLDNVTLASLVAKQDECKE 138 >gi|296112360|ref|YP_003626298.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4] gi|295920054|gb|ADG60405.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4] gi|326568908|gb|EGE18977.1| transcriptional regulator NsrR [Moraxella catarrhalis BC1] Length = 177 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--------------------- 97 G+ GG+RL I + ++V+ TE FFV CFA Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120 Query: 98 --------DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 C + +C L V +A AF VL Y++ ++ N ++ + Sbjct: 121 LSVGQPAMSCVISPACHLKQVFAEAAKAFLQVLDSYTLADIISNADELRHCLS 173 >gi|292489066|ref|YP_003531953.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|292900194|ref|YP_003539563.1| transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291200042|emb|CBJ47167.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291554500|emb|CBA22046.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|312173222|emb|CBX81477.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC BAA-2158] Length = 165 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + AD I + V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 D L ++ LV N+ + Sbjct: 119 DFLNNITLAELVNNQEIL 136 >gi|209694305|ref|YP_002262233.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] gi|226711609|sp|B6EGX4|ISCR_ALISL RecName: Full=HTH-type transcriptional regulator iscR gi|208008256|emb|CAQ78401.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 168 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 11/153 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL D+I + V+ A +ES +C K C C ++ R + Sbjct: 61 PGGGYRLGLKPDEIAVGMVISAVDESVDATKCHG--KEGCQGGTRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECL--------VRNRSSIKKIFNAG 144 L S+ L V +R +I N G Sbjct: 119 SFLDGISLGELMVDNEVQQVSDRQNIDAALNNG 151 >gi|225408021|ref|ZP_03761210.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme DSM 15981] gi|225042454|gb|EEG52700.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme DSM 15981] Length = 135 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ A H D + +IA ISE +L +L+ LV+ ++ +RG Sbjct: 1 MMISTRGRYALRVMLDLAEHCADGYIPLKEIAHRQDISEKYLEIVLKVLVRNNLLTGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R + T+ ++++ TE S C +CP +C V +K Sbjct: 61 KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACADEGNTECPRRETCPSRPVWQKLDTLIN 120 Query: 120 DVLTQYSIECLVRNR 134 D L ++E L+++ Sbjct: 121 DYLDGITLEDLLKSP 135 >gi|323140322|ref|ZP_08075254.1| putative HTH-type transcriptional regulator IscR [Phascolarctobacterium sp. YIT 12067] gi|322415180|gb|EFY05967.1| putative HTH-type transcriptional regulator IscR [Phascolarctobacterium sp. YIT 12067] Length = 144 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AI H + +A+ IS+ +L +I+ L KAG V++ RG Sbjct: 1 MKISTKGRYALRLMLDLAINHTGSYIPLKTVAQRQNISDKYLEQIIHQLSKAGFVQSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL D+ T+ ++++ E S C K C SC + +K A Sbjct: 61 AQGGYRLAHTPDEYTVGEILRTVEGSLAPVSCLDC-KTPCDQFDSCITIGLYKKIQQAID 119 Query: 120 DVLTQYSIECLVRN 133 V+ ++ ++ + Sbjct: 120 GVVDHTTLHDMISD 133 >gi|259907700|ref|YP_002648056.1| DNA-binding transcriptional regulator IscR [Erwinia pyrifoliae Ep1/96] gi|224963322|emb|CAX54807.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283477554|emb|CAY73470.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM 12163] gi|310764792|gb|ADP09742.1| DNA-binding transcriptional regulator IscR [Erwinia sp. Ejp617] Length = 165 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + AD I + V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 D L ++ LV N+ + Sbjct: 119 DFLNNITLAELVNNQEIL 136 >gi|156973367|ref|YP_001444274.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116] gi|189044753|sp|A7MU47|ISCR_VIBHB RecName: Full=HTH-type transcriptional regulator iscR gi|156524961|gb|ABU70047.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116] Length = 168 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+++ ++ Sbjct: 119 DFLNNITLGELMKDNEVLE 137 >gi|34581534|ref|ZP_00143014.1| hypothetical protein [Rickettsia sibirica 246] gi|28262919|gb|EAA26423.1| unknown [Rickettsia sibirica 246] Length = 142 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 66/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+ Sbjct: 1 MQLTSVTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + + D+++ E + + ECF + C + SC +++A AF Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEAFIK 120 Query: 121 VLTQYSIEC 129 L Y++E Sbjct: 121 TLNNYTLED 129 >gi|260550152|ref|ZP_05824366.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406907|gb|EEX00386.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 157 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + ++ L+ Sbjct: 119 DYLAKITLADLI 130 >gi|126728159|ref|ZP_01743975.1| Transcriptional regulator [Sagittula stellata E-37] gi|126711124|gb|EBA10174.1| Transcriptional regulator [Sagittula stellata E-37] Length = 171 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 76/141 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ RVLM+CA + R +QIA AC S + +++Q L G + T RGR Sbjct: 1 MRLTTRTNLAARVLMFCAANPGTQVRSAQIAAACNASANHVARVVQQLQSEGFLSTRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L RP I+I V + E AECF CPL G+C L L +AL+AF+ Sbjct: 61 TGGLQLARPPSAISIGTVFRLFETEIPFAECFDPVANTCPLTGTCRLKRYLTRALDAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L + +++ L + + ++ Sbjct: 121 ELDRVTLDDLTQGNCGLDRLL 141 >gi|301167694|emb|CBW27277.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 143 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IRVLMY I+++ ++I+ A IS L KI+ L K +++ +G Sbjct: 1 MKLTTYTDYSIRVLMYLGINSERLCTSTEISAAYGISRNHLSKIIHQLSKLKYIQSYKGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119 GG+ L I + +++ E F + ECF + C + SC L S+L +L F Sbjct: 61 SGGITLLEKPKNINLRKLIEQVEPDFDIVECFNQDSVFPCKITPSCKLKSILNSSLIEFL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L +Y++ ++ N+ +K Sbjct: 121 KNLEKYTLADIIENKDELKSNL 142 >gi|260912948|ref|ZP_05919433.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella dagmatis ATCC 43325] gi|260632938|gb|EEX51104.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella dagmatis ATCC 43325] Length = 154 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHSKRGPVSLSDISERQHISLSYLEQLFAKLRRYGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P ++I++ V+ A E+ V C DC C S+ ++ Sbjct: 61 PGGGYQLGLPTNEISVGMVINAVNENIDVTRCHGRG--DCQEGIECLTHSLWKELSQRIE 118 Query: 120 DVLTQYSIECLVRN 133 D L + ++ LV Sbjct: 119 DFLNEITLAELVDK 132 >gi|271501586|ref|YP_003334612.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii Ech586] gi|270345141|gb|ACZ77906.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii Ech586] Length = 164 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDSAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L +++ LV N+ + Sbjct: 119 EFLNNITLDELVNNKEIL 136 >gi|332296703|ref|YP_004438625.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] gi|332179806|gb|AEE15494.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] Length = 152 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R ++ A+ N D + I+ IS +L +I L K G++ +VRG Sbjct: 1 MKISTRGRYALRFMIDLALQNSDQFIALKDISGRQEISVKYLEQITSLLGKYGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG +L +PA Q TI ++++ TE + C + +CP C Sbjct: 61 QQGGYKLAKPASQYTIGEILRITEGNLAPVACLDTAVNECPRCNQCKTLPFWEGLAATIN 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L ++ L S++ + Sbjct: 121 SYLDSVTLADLAAQESAVAPV 141 >gi|188533165|ref|YP_001906962.1| DNA-binding transcriptional regulator IscR [Erwinia tasmaniensis Et1/99] gi|226711618|sp|B2VI31|ISCR_ERWT9 RecName: Full=HTH-type transcriptional regulator iscR gi|188028207|emb|CAO96065.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 165 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + AD I + V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 D L ++ LV N+ + Sbjct: 119 DFLNNITLAELVNNQEIL 136 >gi|268593201|ref|ZP_06127422.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rettgeri DSM 1131] gi|291311249|gb|EFE51702.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rettgeri DSM 1131] Length = 165 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQSGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ADQI + +V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ LV+N+ + Sbjct: 120 SFLSSISLDELVKNQEVM 137 >gi|294140361|ref|YP_003556339.1| Rrf2 family protein [Shewanella violacea DSS12] gi|293326830|dbj|BAJ01561.1| Rrf2 family protein [Shewanella violacea DSS12] Length = 167 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 15 MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRNGLVSSVRG 74 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES C K +C C S+ Sbjct: 75 PGGGYRLGADAVDISVGMVVRAVDESVDATRC--QGKGNCQNGTRCLTHSLWGDLSKQIS 132 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ R Sbjct: 133 DFLNGISLAGLMSKRD 148 >gi|148265924|ref|YP_001232630.1| BadM/Rrf2 family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399424|gb|ABQ28057.1| transcriptional regulator, BadM/Rrf2 family [Geobacter uraniireducens Rf4] Length = 154 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A ++ P +I I+ IS +L +I Q L + GI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQEISPRYLEQIFQSLKRKGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNA 117 +GG L + ++IT+ D+++ATE + +C S K +C GSC +V +A Sbjct: 61 PQGGYCLAKNPEEITVKDIIQATEGDTMLVDCAGSKKKKGECAFDGSCVTQTVWEEANAK 120 Query: 118 FFDVLTQYSIECLVRNRSSI 137 ++ +++ L ++ Sbjct: 121 LNELFASITLKTLCERGQAM 140 >gi|167836361|ref|ZP_02463244.1| Rrf2 family protein [Burkholderia thailandensis MSMB43] Length = 165 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ +VV+ TE F + CFA +C + C L V A A Sbjct: 61 NGGLRLNAQSATLTVGEVVRKTENDFALVGCFAGEAESHRNCVIQSVCRLKGVFVAAREA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L + S + + Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145 >gi|127513246|ref|YP_001094443.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica PV-4] gi|126638541|gb|ABO24184.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica PV-4] Length = 153 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES C +C C S+ Sbjct: 61 PGGGYRLGFDASDISVGMVVRAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ R Sbjct: 119 DFLNGISLAGLMNKRD 134 >gi|167750161|ref|ZP_02422288.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702] gi|167656904|gb|EDS01034.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702] gi|291531912|emb|CBK97497.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum 70/3] gi|291556686|emb|CBL33803.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum V10Sc8a] Length = 145 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L+ A H D + +IA+ +S+ +L +I+ L K+ I+ T RG Sbjct: 1 MKISTKGRYVLRMLIDLAEHQGDGYIPLKEIAQRQGVSKKYLEQIVPMLNKSDILRTNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + D+ T+ D+++ TE S C S ++C C S+ + Sbjct: 61 FQGGYRLAKAPDKYTVGDILRLTEGSLAPVACLESGVVECDRSEHCATLSLWQGLYKVIN 120 Query: 120 DVLTQYSIECLVRN 133 + L +++ L+ + Sbjct: 121 EYLDSVTLQDLIDS 134 >gi|119774429|ref|YP_927169.1| Rrf2 family protein [Shewanella amazonensis SB2B] gi|119766929|gb|ABL99499.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis SB2B] Length = 153 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSAQGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL AD I++ VV A +ES C + +C C S+ Sbjct: 61 PGGGYRLGLEADDISVGMVVHAVDESVDATRCQGAG--NCQSGSRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L++ R Sbjct: 119 DFLNGISLAALMQKRD 134 >gi|255318956|ref|ZP_05360181.1| putative transcriptional regulator [Acinetobacter radioresistens SK82] gi|262378308|ref|ZP_06071465.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter radioresistens SH164] gi|255303973|gb|EET83165.1| putative transcriptional regulator [Acinetobacter radioresistens SK82] gi|262299593|gb|EEY87505.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter radioresistens SH164] Length = 157 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARTADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRN 133 D L + ++ LV Sbjct: 119 DYLAKITLADLVAR 132 >gi|217970609|ref|YP_002355843.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thauera sp. MZ1T] gi|217507936|gb|ACK54947.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T] Length = 160 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A D P ++ IAE IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAARQGDGPVTLAGIAERQSISLSYLEQLFGKLRRHKLVNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R D+IT+ D++ A +E +C K +C C + + Sbjct: 61 PGGGYRLARAMDEITVADIIIAVDEPMDATQC--GGKENCHDDHVCMTHHLWSNLNQRIY 118 Query: 120 DVLTQYSIECLVRNR 134 L S+E LV+++ Sbjct: 119 AYLDSVSLEALVKHQ 133 >gi|167759052|ref|ZP_02431179.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704] gi|167663459|gb|EDS07589.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704] Length = 173 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A +++ P I+ I+ ISE +L +++ L KAG+V+++RG Sbjct: 22 MKLSTKGRYGLRAIIDLARYSEEEPVSINNISIRQDISERYLEQLVALLKKAGLVKSIRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 GG L + A++I++ DV++A E S +C A C C V +K ++ Sbjct: 82 ATGGYVLAKRAEEISVGDVLRALEGSLEPVKCAAFYSDEGCMASDGCVTKYVWQKINDSI 141 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + + ++ LVR I Sbjct: 142 NKTVDEIMLDELVRESKMINP 162 >gi|119371154|sp|Q9KTY3|ISCR_VIBCH RecName: Full=HTH-type transcriptional regulator iscR Length = 173 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + I+I V+ A +ES +C + K DC C ++ R + Sbjct: 61 PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRIT 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 119 DFLNNITLGELMMDNEVLE 137 >gi|322831758|ref|YP_004211785.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602] gi|321166959|gb|ADW72658.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602] Length = 164 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + I + V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKDSGDIAVGAVITAVDESVDATRC--QGKEGCQNGERCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 119 GFLNNITLAELVNNQEILE 137 >gi|308187781|ref|YP_003931912.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] gi|308058291|gb|ADO10463.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] Length = 165 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +D I++ +V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKASDTISVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 D L ++ LV N+ + Sbjct: 119 DFLNNITLAELVNNQEIL 136 >gi|117926344|ref|YP_866961.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1] gi|117610100|gb|ABK45555.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp. MC-1] Length = 157 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A H + P +++I+ IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTAMLDLAQHANRGPVTLAEISNRQQISLSYLEQLFAKLRRGGLVGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A+QI++ +++A +E C C C + + + Sbjct: 61 PGGGYQLDRGAEQISVAAIIRAVDEPIHATSCKDKGTEGCRRDTRCITHDLWARLGEHIY 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L S+ L+R+ S++ + A Sbjct: 121 HYLESVSLAQLMRDGSALAMLGEA 144 >gi|294788820|ref|ZP_06754061.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453] gi|294483302|gb|EFG30988.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453] Length = 152 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL++ AI++D I+ IA+A IS+ L K++ LVK G + +VRG+ Sbjct: 1 MYLTQQTDYALRVLIFAAINDDSLVNIATIADAYQISKSHLMKVVTALVKGGFLHSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA +I + VV+ E V ECF C L C L +L + AF Sbjct: 61 GGGLRLARPAVEICVGAVVRHME-HLTVVECFG-ENNQCILTPCCRLMDILHGGMKAFLS 118 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L Y++ L+ NR + + ++ Sbjct: 119 HLDGYTLADLIGNRQAHELLYQ 140 >gi|326791918|ref|YP_004309739.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium lentocellum DSM 5427] gi|326542682|gb|ADZ84541.1| transcriptional regulator, BadM/Rrf2 family [Clostridium lentocellum DSM 5427] Length = 149 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ +++ + IAE +SE +L +++ L K +V + RG Sbjct: 1 MKLSTKGRYGLQAMVDLGVYSKEKHISLKSIAERLSMSENYLEQLMALLKKNKLVISQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L +P ++ITI +V++A E S +C C L G C SV K ++ Sbjct: 61 AQGGYALAKPPEEITIGEVLRALEGSLAPTDCTCKDGDTHCFLDGKCVTKSVWEKIRDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V+ +++ L+ + I + Sbjct: 121 DRVVDNITLDQLMADYEKINE 141 >gi|281355615|ref|ZP_06242109.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] gi|281318495|gb|EFB02515.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] Length = 148 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R+L+ A++ D P I +IA ISE ++ +++ L KAG V +VR Sbjct: 1 MKISTKGRYGLRILLDIALYRVGDKPRMIREIASNQEISEKYISRLIIELRKAGFVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R + I++LDV++ E + +C S C C + + Sbjct: 61 GVNGGYTLTRKPEDISVLDVLETMEGPVAIVDCMNSSGEVCRRKSQCPTQRMWTEINQKI 120 Query: 119 FDVLTQYSIECLVR 132 Y+++ LV Sbjct: 121 RSAFAAYTLKDLVE 134 >gi|56475710|ref|YP_157299.1| rf2 family transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56311753|emb|CAI06398.1| predicted transcriptional regulator,rf2 family [Aromatoleum aromaticum EbN1] Length = 211 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY R L++ + IS ++E I L KI+ L + G +E +RG Sbjct: 57 MQLTRYTDYAFRTLIFLGLQKPAELVTISIVSEHFDIPRNHLVKIVNHLARLGYIEALRG 116 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL RPA +I + VV+A EE+ C H+ C ++ SC L ++ +A AF Sbjct: 117 KGGGIRLNRPATKINLRTVVEAVEETLTPINC---HEPTCRILPSCRLVGIMDEAQEAFL 173 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +YS+ L ++ ++K+ Sbjct: 174 AVLGKYSLSDLQQDPQRLEKLL 195 >gi|229826314|ref|ZP_04452383.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC 49176] gi|229789184|gb|EEP25298.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC 49176] Length = 153 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R ++ A+H D +S IA ISE +L +++ L KAGIV ++RG Sbjct: 1 MKISTKGRYGLRAVLDIAMH-DEAASVSSIAARQFISENYLERLIAMLKKAGIVNSLRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L RPA++I++ +V++A E +C C +C V ++ ++ Sbjct: 60 QGGYVLARPAEEISVGEVLRALEGDLNPVDCSEIDGSLCEGSDTCVTKFVWKRISDSIKQ 119 Query: 121 VLTQYSIECLVRNRSSI 137 + I L + Sbjct: 120 AVDNLMISELANEGKHL 136 >gi|59711223|ref|YP_203999.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding transcriptional repressor [Vibrio fischeri ES114] gi|59479324|gb|AAW85111.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding transcriptional repressor [Vibrio fischeri ES114] Length = 168 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A+QI + V+ A +ES +C K C C ++ R + Sbjct: 61 PGGGYRLGLKAEQIAVGMVISAVDESVDATKCHG--KEGCQGGTRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+++ Sbjct: 119 TFLDGITLGELMQDNE 134 >gi|303249012|ref|ZP_07335257.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302489598|gb|EFL49538.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 145 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG+R+L+ A+H + P RI IA+ IS +L ++++ L KAG + + RG Sbjct: 1 MQLTTRSRYGLRMLLDIALHGGERPVRIQDIAKRRNISVKYLEQLIRALKKAGFINSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L P ++I + DVV+A E + EC + + C + G C + +A + F Sbjct: 61 PRGGHVLAMPPEEIRVGDVVRALESRPELTECVGNPET-CLIAGDCVTRRIWARATESLF 119 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L I ++ +++ +I Sbjct: 120 RELDAIRIADML-DQAQKAEILG 141 >gi|189425987|ref|YP_001953164.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter lovleyi SZ] gi|189422246|gb|ACD96644.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ] Length = 158 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A H P +I I+ IS +L +I Q L KAGI+++ RG Sbjct: 1 MRLSTKSRYGLRALFDIAYHTGTAPAQIQDISRRQLISPRYLEQIFQNLKKAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH------KIDCPLVGSCGLTSVLRK 113 +GG L R DQIT+L+V++ATE+ + +C K +CP G+C +V + Sbjct: 61 PQGGYTLARTPDQITVLEVIRATEQDALLVDCAGQGKKTRRRKNECPFEGNCVTQTVWKD 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A + ++ + ++E L + + Sbjct: 121 ANDLLAELFGKLTLETLCQRGQEM 144 >gi|119385748|ref|YP_916803.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376343|gb|ABL71107.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 145 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 67/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDYG+RVLM A + P QIA IS+ L K++ L G V + RGR Sbjct: 1 MRLATFTDYGLRVLMRLAGAPEKPISTGQIAREFAISQHHLAKVVSDLGLGGFVRSERGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA +IT+ VV+ E F + ECF + +C L C L L A AF Sbjct: 61 SGGLRLMRPAHEITLGQVVRHLERKFAIVECFRADGGECVLRPRCRLRPQLSAAREAFMA 120 Query: 121 VLTQYSIEC 129 L + ++E Sbjct: 121 ELDRTTLED 129 >gi|39997666|ref|NP_953617.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39984558|gb|AAR35944.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|307635053|gb|ADI85329.2| transcriptional regulator, IscR family [Geobacter sulfurreducens KN400] Length = 145 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ ++H++ P + IA+ I +L ++ L + IVE+VRG Sbjct: 1 MRLSTRAQYAVRAMVDLSLHSEGKPVALRDIAQREDIPLNYLEQLFNRLRRGSIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + I + ++V EE C K C +C SV Sbjct: 61 PGGGYLLARESSAILVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHSVWEMLGERIR 120 Query: 120 DVLTQYSIECLVRN 133 L ++E LVR+ Sbjct: 121 TFLDSITLEDLVRD 134 >gi|157961313|ref|YP_001501347.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846313|gb|ABV86812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana ATCC 700345] Length = 153 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV+A +ES C +C C S+ + Sbjct: 61 PGGGYRLGTDACDISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSSQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ R Sbjct: 119 DFLNGISLAGLMHKRD 134 >gi|150015981|ref|YP_001308235.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902446|gb|ABR33279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 150 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A + P I I++ +SE +L ++ PL +A ++ ++RG Sbjct: 1 MKLSTKGRYGVRAMVDLASNYGGAPVSIKTISKRENLSEYYLEQLFSPLRRANMIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG LC+ IT+ D++ E +A+C ++C C +V K + Sbjct: 61 AQGGYVLCKAPKDITVGDIMTILEGPVEIADCIDG--VECDSSDCCATKAVWEKIKRSID 118 Query: 120 DVLTQYSIECLVRNRS 135 DV+ +++ ++ + Sbjct: 119 DVMNSITLQDILDDYE 134 >gi|281355327|ref|ZP_06241821.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] gi|281318207|gb|EFB02227.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] Length = 148 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 79/137 (57%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R+L+ A+++ + P I I+E+ ISE ++ +++ L KAG+V+++RG Sbjct: 1 MKISTKGRYGLRILLDLALNDSEKPRMIRDISESQHISEKYISRLIIELRKAGMVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG R+ R +IT+LDVV+ E + +C ++ CP + SC + + N Sbjct: 61 SKGGYRISREPKEITLLDVVEVMEGPVSIVDCVSARDC-CPRIASCVTREIWTELNNQIR 119 Query: 120 DVLTQYSIECLVRNRSS 136 + L + +++ ++ + Sbjct: 120 EALQKITLQEIIDRYRA 136 >gi|257465488|ref|ZP_05629859.1| putative HTH-type transcriptional regulator [Actinobacillus minor 202] gi|257451148|gb|EEV25191.1| putative HTH-type transcriptional regulator [Actinobacillus minor 202] Length = 150 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ AIH + P ++ IA+ IS +L ++ L + GIV +VRG Sbjct: 1 MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + +I++ ++ A ES V +C S +C +C ++ + Sbjct: 61 PGGGYKLEKSPKEISVGMIIAAVNESVDVTKCKGSG--NCRKDSTCLTHTLWERLEEQIG 118 Query: 120 DVLTQYSIECLVRNRSS 136 L S+E LV+ S Sbjct: 119 VFLNTVSLEDLVKENSD 135 >gi|56461141|ref|YP_156422.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180151|gb|AAV82873.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina loihiensis L2TR] Length = 159 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+ + P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALFTANGPVPLADISERQGISLSYLEQLFSRLRKHGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A+ I++ V+ A +ES C K +C C S+ + Sbjct: 61 PGGGYRLGCAANDISVGAVIHAVDESIDATRC--QGKANCQGGERCLTHSLWEGLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 D L ++ L++ + + + N Sbjct: 119 DFLDGITLAELMK-KEDVGDVLN 140 >gi|315651843|ref|ZP_07904846.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium saburreum DSM 3986] gi|315485845|gb|EFU76224.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium saburreum DSM 3986] Length = 146 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 81/139 (58%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R Y +++++ AI+ + P +I+Q++++ ISE +L +I+ L KA +V+++RG Sbjct: 1 MKISTRGRYALKMMVEFAINMETPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L +P ++ T+ ++++ TE S +C +C C ++ +K +A + Sbjct: 61 QGGYLLVKPVEEYTVGEILRLTEGSLAPVDCL-DGNGNCVHSDFCVTQNLFKKVEDAINN 119 Query: 121 VLTQYSIECLVRNRSSIKK 139 V+ S++ LV + I++ Sbjct: 120 VVDNISLKDLVTDELDIRR 138 >gi|212710633|ref|ZP_03318761.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM 30120] gi|212686714|gb|EEB46242.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM 30120] Length = 165 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ADQI + +V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ LV+N+ + Sbjct: 120 SFLSSISLDELVKNQEVM 137 >gi|330817194|ref|YP_004360899.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia gladioli BSR3] gi|327369587|gb|AEA60943.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia gladioli BSR3] Length = 156 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 5/147 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ ++ + I +I++A IS+ L K++Q L + G V+TVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRSEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKAL 115 GG+R+ + ++TI +VV+ATE F + CF C + C L VL A Sbjct: 61 NGGLRINANSGRLTIGEVVRATESDFALVGCFGGEGQGVEHRSCVIEPHCRLKGVLYAAR 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142 AFF L +++I L R S + Sbjct: 121 EAFFSELDRHTIAELSRPASPLAAALG 147 >gi|302387033|ref|YP_003822855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197661|gb|ADL05232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 143 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y IR+++ A HN + IA+ ISE +L I+ L K ++ ++RG Sbjct: 1 MKISTRGRYAIRLMIDLAEHNNGEYITLMDIAKRQEISEKYLEAIVSILSKNNLLVSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + + TI +++ TE S C +C C + Sbjct: 61 KGGGYKLAKDPESYTIGSILRLTEGSLAPVACLDGENNNCSRSPECQTIDLWEGLNKLIN 120 Query: 120 DVLTQYSIECLVRN 133 + L +I L++ Sbjct: 121 EYLDGVTIADLMKK 134 >gi|308446118|ref|XP_003087101.1| hypothetical protein CRE_03606 [Caenorhabditis remanei] gi|308262503|gb|EFP06456.1| hypothetical protein CRE_03606 [Caenorhabditis remanei] Length = 271 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A D P I++IAE +SE L KI+ + K G + T RG+ Sbjct: 1 MQLNKFTDYALRILMYIAPPKDVPYTIAEIAEDLHVSENHLVKIVHFMGKQGWLITTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + +V+ + + EC + C L CGL +L +A+ F+ Sbjct: 61 GGGLRLNPDILEFRLGHIVRILQRDAQIVEC---NTPPCVLRPRCGLKGILDQAVEQFYQ 117 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L Y++ ++ KI N+ Sbjct: 118 SLDHYTVADVLNAPPQHPKIVNS 140 >gi|253997038|ref|YP_003049102.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983717|gb|ACT48575.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis JLW8] Length = 168 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M LT + + + ++ AI+ P ++ I+E IS +L ++ L + G+V Sbjct: 1 MRLTTKGRFAVTAMLDLAINETKDALEAKPVTLAGISERQDISLSYLEQLFSRLRRQGLV 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +++RG GG L + +I++ +++ A +E +C +C G C + Sbjct: 61 KSIRGPGGGYNLAKSHSEISVAEIIHAVDEQIDATQC--GGHENCRDEGRCMTHDLWSAL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIF 141 + L ++ +V ++ S +KI Sbjct: 119 NTKILEYLDGITLADMVASQKSGQKIL 145 >gi|226953086|ref|ZP_03823550.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294650675|ref|ZP_06728029.1| HTH-type transcriptional regulator IscR family protein [Acinetobacter haemolyticus ATCC 19194] gi|226836178|gb|EEH68561.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292823466|gb|EFF82315.1| HTH-type transcriptional regulator IscR family protein [Acinetobacter haemolyticus ATCC 19194] Length = 157 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +IT+L++++A E+ C HK +C C + + + Sbjct: 61 ANGGYHLARNASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQDLSHHIA 118 Query: 120 DVLTQYSIECLVRN 133 D L + ++ L+ Sbjct: 119 DYLAKITLADLIAR 132 >gi|322514681|ref|ZP_08067709.1| iron-sulfur cluster assembly transcription regulator IscR [Actinobacillus ureae ATCC 25976] gi|322119379|gb|EFX91488.1| iron-sulfur cluster assembly transcription regulator IscR [Actinobacillus ureae ATCC 25976] Length = 150 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV++VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLTDISERQAISLSYLEQLFAQLRREGIVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + ++I++ ++ A E+ V +C S +C C + + + Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEDQIG 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV S Sbjct: 119 VFLNTITLAELVEEHSD 135 >gi|300724150|ref|YP_003713467.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus nematophila ATCC 19061] gi|81322241|sp|Q8GLE9|ISCR_XENNA RecName: Full=HTH-type transcriptional regulator iscR gi|23345066|gb|AAN17744.1| putative iron-sulfur cluster regulator protein IscR [Xenorhabdus nematophila] gi|297630684|emb|CBJ91349.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Xenorhabdus nematophila ATCC 19061] Length = 164 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I + +V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGRDAGRIFVAEVISAVDESVDATRC--QGKEGCQGGDRCLTHALWRDLSERIT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L S+E LV+N+ + Sbjct: 119 SFLGSISLEELVKNQEVL 136 >gi|261855536|ref|YP_003262819.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261836005|gb|ACX95772.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 150 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L ++TD+ +R LM A ++ I +I+E IS + K++ LV+ VE Sbjct: 1 MQLNQQTDFALRALMLLAQEEKNNSPRLLTIREISEFHRISRNHMMKVINTLVEQNFVEA 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG+ GG++L RP+++I + DVV+A E ++ + ECF+ + +C L+ SC L + +ALN Sbjct: 61 KRGQNGGLKLNRPSNEIRVGDVVRALENNWNLVECFSPERQNCQLLPSCQLKYLFHRALN 120 Query: 117 AFFDVLTQYSIECL 130 AFF+ L Q ++ + Sbjct: 121 AFFEELDQCTLADI 134 >gi|237748047|ref|ZP_04578527.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229379409|gb|EEO29500.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 144 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ + D + + IS +L +I L K+G++ +VRG Sbjct: 1 MKISTKGRYALRFMIDLVQNGGDSYTSLKDVTRRQTISPKYLEQIATSLSKSGLILSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R ++ T+ D+++ E +F C CP SC Sbjct: 61 PQGGYKLARSPEKYTVADILRPIEGTFACVACLEQTPNACPRYESCSTVHFWEGLHEVMT 120 Query: 120 DVLTQYSIECLV 131 + L ++ L Sbjct: 121 NYLNGTTLADLA 132 >gi|218708628|ref|YP_002416249.1| putative transcriptional regulator [Vibrio splendidus LGP32] gi|254806057|sp|B7VJS5|ISCR_VIBSL RecName: Full=HTH-type transcriptional regulator iscR gi|218321647|emb|CAV17599.1| Predicted transcriptional regulator [Vibrio splendidus LGP32] Length = 173 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I + V+ A +ES +C DC C ++ R + Sbjct: 61 PGGGYRLGAEASDIAVGTVIAAVDESVDATKCHGR--ADCQGGTRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ L+++ ++ Sbjct: 119 SFLNDITLGELMKDNEVLE 137 >gi|302344575|ref|YP_003809104.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641188|gb|ADK86510.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii DSM 2075] Length = 151 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R ++ A+HND P + +A IS +L ++L PL AG+V++VRG Sbjct: 1 MKLSTRGRYGVRAMLELAMHNDDGPVPLRNLALRQEISAKYLEQLLIPLKGAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L I++ D+V++ E EC + C VG C + V + Sbjct: 61 ARGGYQLAADPKDISLYDIVRSLEGPLAPVECVQDAEY-CQRVGGCTVHLVWGEMGQLLV 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L++ S+ +V + +I Sbjct: 120 DFLSKMSLADMVVRQREKDQI 140 >gi|119773198|ref|YP_925938.1| Rrf2 family protein [Shewanella amazonensis SB2B] gi|119765698|gb|ABL98268.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis SB2B] Length = 151 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L KAG ++TVR Sbjct: 1 MQLTRYTDFGIRTLMYMAVQPERTALFRIAEITEVFDLSPNHVSKIIHHLGKAGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL +PA +I + +V+ E S C K C L+ +C L VL A+ A+ Sbjct: 61 GKAGGFRLAKPAAEINLGALVRELEHSLAPINCS---KPVCRLLPACQLKGVLANAVQAY 117 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 VL QY + +V NR + + Sbjct: 118 LAVLDQYQLADIVTNRDELLALL 140 >gi|254473748|ref|ZP_05087143.1| protein Aau3 [Pseudovibrio sp. JE062] gi|211957134|gb|EEA92339.1| protein Aau3 [Pseudovibrio sp. JE062] Length = 142 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 64/128 (50%), Positives = 91/128 (71%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA + D P+++++IA + +SE LFKI++ LV A +++T+RGR GG+ L RPA+QI+ Sbjct: 1 MYCAANPDKPSKVAEIAASFSMSETHLFKIMKVLVDADLMKTIRGRNGGIVLPRPAEQIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + VV+ATEESF +AECF S + DCPLV CG SVL +AL AF VL + +I L NR Sbjct: 61 VGQVVRATEESFLLAECFDSGRQDCPLVNHCGFNSVLHEALEAFLGVLDKCTIADLADNR 120 Query: 135 SSIKKIFN 142 +SI+ + Sbjct: 121 ASIRHLLQ 128 >gi|294677259|ref|YP_003577874.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294476079|gb|ADE85467.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus SB 1003] Length = 168 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 80/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CA++ D R +IAEAC SE L +++ L + G +ET RGR Sbjct: 1 MRLTTRTNLAMRTLMFCAVNGDRIVRKHEIAEACNASENHLAQVVNTLAQRGFIETQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RP DQI + +V++ E EC CPL +C + AL AF+ Sbjct: 61 SGGLRLARPMDQIGVGEVLRTFEAVLPFVECLDGDNNTCPLCDACRFRDAIEAALEAFYT 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 + ++S+ LVR+ +++ + Sbjct: 121 AMDRHSVGDLVRDNDALEHLL 141 >gi|160895967|ref|YP_001561549.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361551|gb|ABX33164.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans SPH-1] Length = 146 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LM+ A H I++IA+A ISE L K+ L G + TVRG+ Sbjct: 1 MRLTLMTDYALRLLMHVARHPGRLCTIAEIAQAHAISEAHLMKVTHQLALRGWIVTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL I + DVV+ E + ECF + C L C L VL AL++F Sbjct: 61 GGGMRLAHAPADIGLGDVVRGMEPDLAIVECFTGTSPPACTLAQDCRLAGVLGGALDSFM 120 Query: 120 DVLTQYSIECLVRNRSSI 137 L +++ L+ +S+ Sbjct: 121 AHLDGFTLADLLPAPASL 138 >gi|269103288|ref|ZP_06155985.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163186|gb|EEZ41682.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp. damselae CIP 102761] Length = 173 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A++I + V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGDDANKIAVGMVIAAVDESVDATKC--QGKGDCQGGARCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+ + Sbjct: 119 GFLNNITLGELMEDND 134 >gi|170726128|ref|YP_001760154.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169811475|gb|ACA86059.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC 51908] Length = 153 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTAGPVPLADISERQGISLSYLEQLFAKLRKQGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A +I++ VV+A +ES C +C C S+ Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ R Sbjct: 119 DFLNGISLAGLMTKRD 134 >gi|94501139|ref|ZP_01307662.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter sp. RED65] gi|94426715|gb|EAT11700.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter sp. RED65] Length = 160 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH + P ++ I+ IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHGQHKPVSLNDISGRQGISLSYLEQLFAKLRRCDLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R +I+I VV A ES C K DC C + + Sbjct: 61 PGGGYRLSREGSEISIAQVVDAVNESMDATRC--RGKGDCQEGDQCLTHHLWQDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ SI LV + + Sbjct: 119 AFLSDISIADLVSRKEIL 136 >gi|307256986|ref|ZP_07538762.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261420|ref|ZP_07543093.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306864470|gb|EFM96377.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306868877|gb|EFN00681.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 150 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + ++I++ ++ A E+ V +C S +C C + + Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEEQIG 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV S Sbjct: 119 VFLNTITLAELVEEHSD 135 >gi|262274800|ref|ZP_06052611.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886] gi|262221363|gb|EEY72677.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886] Length = 174 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H++ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSEAGPVPLADISERQGISLSYLEQLFSRLRKAGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A++I + V+ A +ES +C K DC C ++ R Sbjct: 61 PGGGYRLGVSANEIAVGMVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSARIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+++ Sbjct: 119 SFLNDITLGELMQDNE 134 >gi|315925094|ref|ZP_07921311.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] gi|315621993|gb|EFV01957.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] Length = 145 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H D + IA IS+ +L +I+ + I+ T RG Sbjct: 1 MKISTKGRYALRMMLDLAYHQDEGYIALKDIARRQNISKKYLEQIVSLMRGPDILATSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG RL RP T+ ++++ TE S C CP C V + Sbjct: 61 YRGGYRLARPPRDYTVGEILRLTEGSLAPVACLEEGADKCPRAAGCETLPVWQGLYTRIT 120 Query: 120 DVLTQYSIECLVRN 133 D L +++ ++ + Sbjct: 121 DYLDSLTLQDIIDH 134 >gi|32034036|ref|ZP_00134280.1| COG1959: Predicted transcriptional regulator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208408|ref|YP_001053633.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae L20] gi|165976351|ref|YP_001651944.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150259|ref|YP_001968784.1| HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251397|ref|ZP_07337574.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252975|ref|ZP_07339130.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245844|ref|ZP_07527929.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247920|ref|ZP_07529954.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250175|ref|ZP_07532134.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252558|ref|ZP_07534453.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254817|ref|ZP_07536643.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259259|ref|ZP_07540988.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263598|ref|ZP_07545212.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097200|gb|ABN74028.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876452|gb|ABY69500.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915390|gb|ACE61642.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648166|gb|EFL78367.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649751|gb|EFL79930.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853204|gb|EFM85424.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855570|gb|EFM87739.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857806|gb|EFM89903.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859963|gb|EFM91981.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862188|gb|EFM94156.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866626|gb|EFM98485.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871061|gb|EFN02791.1| HTH-type transcriptional regulator iscR [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 150 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + ++I++ ++ A E+ V +C S +C C + + Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEEQIG 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV S Sbjct: 119 VFLNTITLAELVEEHSD 135 >gi|325122066|gb|ADY81589.1| hypothetical protein BDGL_001003 [Acinetobacter calcoaceticus PHEA-2] Length = 157 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + S+ L+ Sbjct: 119 DYLAKISLADLI 130 >gi|327394815|dbj|BAK12237.1| Rrf2 family protein YfhP [Pantoea ananatis AJ13355] Length = 165 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A+ I + +V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKEANAIAVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L ++ LV N+ + Sbjct: 119 EFLNNITLAELVNNQEIL 136 >gi|126738163|ref|ZP_01753884.1| Rrf2 family protein [Roseobacter sp. SK209-2-6] gi|126720660|gb|EBA17365.1| Rrf2 family protein [Roseobacter sp. SK209-2-6] Length = 151 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 73/143 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K +DY +R+L++ A H D +IA+ + L KI Q L G VE++RGR Sbjct: 1 MQISKFSDYALRILIHLATHEDGLMSTREIAQMQKLPFNHLAKISQWLTHEGYVESLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P + I+I +++ +E + EC C + +CGL +L +A FF Sbjct: 61 NGGMRLALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILNEAQEMFFT 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L ++ ++ ++ + A Sbjct: 121 TLDSKTLHDVLSGNGGMRNLLRA 143 >gi|91225151|ref|ZP_01260373.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01] gi|91190094|gb|EAS76365.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01] Length = 168 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 119 DFLNNITLGELMTDNEVLE 137 >gi|226226792|ref|YP_002760898.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226089983|dbj|BAH38428.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 152 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 76/143 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +D +R LM + D + IA +S L KI+Q L + G VETVRGR Sbjct: 1 MRLTRFSDNALRCLMVLGLEPDALIPVHSIAVRMNMSHEHLVKIVQRLAELGYVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R IT+ +V+ TE++ + ECF CP+ +C L +L +AL+AF Sbjct: 61 NGGVRLVRSPQHITLGALVRETEDNLALVECFEPESNTCPIAPACVLARMLDEALSAFLA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL Y++ ++ + + A Sbjct: 121 VLDGYTLADALKPGRKLTTLMRA 143 >gi|221066727|ref|ZP_03542832.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] gi|220711750|gb|EED67118.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] Length = 154 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LM+ A + IS+I++A ISE + K+ L + G ++TVRG+ Sbjct: 1 MRLTLMTDYALRLLMHVAQRPERLCTISEISQAYGISEAHMMKVTHQLAQQGWIKTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL QI + VV+ E F + ECF + C L G C LT +L+ AL++F Sbjct: 61 GGGMRLAHEPQQINLGAVVRGMEPDFALVECFTNDN-RCMLAGDCRLTGLLQGALHSFMA 119 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L +++ L+ ++S ++ Sbjct: 120 HLDGFTLATLLIPQASANEL 139 >gi|309388970|gb|ADO76850.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium praevalens DSM 2228] Length = 148 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A H + I +I+E ISE +L ++ L KA +V++VRG Sbjct: 1 MRVSTKGRYGLRAMVDLAEHEEGEAIPIRKISERQDISEQYLEQLFATLRKAELVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I++ D++ E +C C + C + + + +A Sbjct: 61 AHGGYMLNHEPEDISVADIITTLEGPIAPVDCVIESDF-CNYIDKCVIHGLWEELADAIN 119 Query: 120 DVLTQYSIECL 130 V+ ++ L Sbjct: 120 GVIENMTLSDL 130 >gi|331005918|ref|ZP_08329266.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989] gi|330420274|gb|EGG94592.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989] Length = 173 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+D P +S+I++ IS +L ++ L KA +V ++RG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHSDKGPVSLSEISKRQEISLSYLEQLFSKLRKADLVASIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R D I I +V A ES C K +C C + + Sbjct: 61 PGGGYQLGRTLDTIYIAQIVDAVNESIDATNC--GGKGNCQQGEVCLTHHLWSDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 L S+ LV R Sbjct: 119 QFLNSISLAKLVERRD 134 >gi|28897369|ref|NP_796974.1| hypothetical protein VP0595 [Vibrio parahaemolyticus RIMD 2210633] gi|81839883|sp|Q87S29|ISCR_VIBPA RecName: Full=HTH-type transcriptional regulator iscR gi|28805581|dbj|BAC58858.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|328472608|gb|EGF43471.1| hypothetical protein VP10329_12296 [Vibrio parahaemolyticus 10329] Length = 168 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 119 DFLNNITLGELMTDNEVLE 137 >gi|262278963|ref|ZP_06056748.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259314|gb|EEY78047.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 157 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKANCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + S+ L+ Sbjct: 119 DYLAKISLADLI 130 >gi|261867572|ref|YP_003255494.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390585|ref|ZP_06634919.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412904|gb|ACX82275.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951119|gb|EFE01238.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter actinomycetemcomitans D7S-1] Length = 157 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ ND P +S I+E IS +L ++ L + +V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALYANDGPVSLSDISERQHISLSYLEQLFAKLRRHNVVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +I+I ++ A E+ C +C C S+ K Sbjct: 61 PGGGYKLGFAPSEISIAMIITAVNENIETTACLG--HGNCSNGSECLTHSLWEKLSQRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L++ ++E LV + ++ Sbjct: 119 DFLSEITLEELVLQQKGRQQ 138 >gi|56461491|ref|YP_156772.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180501|gb|AAV83223.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina loihiensis L2TR] Length = 150 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K TDYG+RVLMY A D I +++ + L K++ L K G++ET RG Sbjct: 1 MQLKKYTDYGLRVLMYLAAKEDTKRATIDELSGIFNVPRNHLNKVVHQLGKEGLIETRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L I + V++ E + +C HK +C + C L V+ + F+ Sbjct: 61 KNGGFLLAIEPADIRLDKVIRRLEGDEYWVDC---HKPECAIFPVCELKHVINQGKETFY 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 D L Y++ LV N + I++ + Sbjct: 118 DFLAGYTLASLVSNDAQIREFWG 140 >gi|153835382|ref|ZP_01988049.1| Rrf2 family protein [Vibrio harveyi HY01] gi|308126079|ref|ZP_05907695.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AQ4037] gi|148868104|gb|EDL67270.1| Rrf2 family protein [Vibrio harveyi HY01] gi|308106690|gb|EFO44230.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AQ4037] Length = 174 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 7 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C K DC C ++ R + Sbjct: 67 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 124 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 125 DFLNNITLGELMTDNEVLE 143 >gi|153838057|ref|ZP_01990724.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810] gi|308094348|ref|ZP_05888684.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AN-5034] gi|308095615|ref|ZP_05907096.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus Peru-466] gi|308125639|ref|ZP_05776393.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus K5030] gi|149748524|gb|EDM59383.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810] gi|308086941|gb|EFO36636.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus Peru-466] gi|308092986|gb|EFO42681.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus AN-5034] gi|308113048|gb|EFO50588.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus K5030] Length = 174 Score = 158 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 7 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C K DC C ++ R + Sbjct: 67 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 124 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 125 DFLNNITLGELMTDNEVLE 143 >gi|289208014|ref|YP_003460080.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thioalkalivibrio sp. K90mix] gi|288943645|gb|ADC71344.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp. K90mix] Length = 164 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++++A +S +L ++ L + G+V + RG Sbjct: 1 MKLTTKGRYAVTAMLDVAMHTENSPVSLAEVARRQKLSLSYLEQLFSRLRRQGLVNSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + I++ D++ A +E V C K +C C + + Sbjct: 61 PGGGYALSREPEGISVADIIVAVDEPVDVTRC--GGKANCNSESRCLTHDLWTDLSQQLY 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L+ ++ ++ + Sbjct: 119 DFLSSRTLADVLERHQA 135 >gi|224823937|ref|ZP_03697046.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224604392|gb|EEG10566.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 160 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ H + P ++ I+E IS +L ++ L +A +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMLDLALRHGNGPVTLAGISERQSISLSYLEQLFGKLRRAELVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A+QI++ D++ A +E +C +C C + F Sbjct: 61 PGGGYTLAKSAEQISVADIITAVDEPVDATQCGGRE--NCHDNHRCMTHDLWTNLNATIF 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L++ ++ LV + + Sbjct: 119 DYLSKVTLFSLVAEQHA 135 >gi|77361587|ref|YP_341162.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas haloplanktis TAC125] gi|76876498|emb|CAI87720.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas haloplanktis TAC125] Length = 163 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD I++ DV+ A +ES C S I C C ++ + Sbjct: 61 PGGGYLLGRKADAISVGDVINAVDESVDATRCQKSD-IGCQSGMRCLTHNLWSELSARIE 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L ++ LV +S +K+I Sbjct: 120 EFLDNITLAELVE-KSDVKEI 139 >gi|222054501|ref|YP_002536863.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221563790|gb|ACM19762.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 154 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A ++ P +I I+ IS +L +I Q L K GI+ + RG Sbjct: 1 MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQNISPRYLEQIFQALKKKGILNSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117 +GG L R D+IT+ D+V+ATE + +C K C G C +V +A Sbjct: 61 PQGGYCLARNPDEITVRDIVQATEGDTLLVDCSGGKKNKQHCGFDGGCVTQTVWDEASRE 120 Query: 118 FFDVLTQYSIECLVRNRSSI 137 + +++ L ++ Sbjct: 121 LNRLFGSITLKTLCDRGHAM 140 >gi|294084466|ref|YP_003551224.1| BadM/Rrf2 family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664039|gb|ADE39140.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Puniceispirillum marinum IMCC1322] Length = 149 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 75/141 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R LM A++ + IS+IAE IS+ L K++ L G + + GR Sbjct: 1 MRLRLQTDYALRALMCLAVNTERRVMISEIAEQQSISKNHLIKVIHRLTGLGFINSQPGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA QI I D+++ E +CF C L+ C L +VL AL+AF+ Sbjct: 61 SGGLWLSRPAAQINIGDLIRQLEADSVFLDCFEGGAGRCRLIPQCQLKAVLADALDAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL ++++ + ++ + Sbjct: 121 VLDRFTLAQVTSRPDELRALL 141 >gi|293608203|ref|ZP_06690506.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828776|gb|EFF87138.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 161 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 5 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 65 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 122 Query: 120 DVLTQYSIECLV 131 D L + S+ L+ Sbjct: 123 DYLAKISLADLI 134 >gi|299770352|ref|YP_003732378.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter sp. DR1] gi|298700440|gb|ADI91005.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter sp. DR1] Length = 157 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + S+ L+ Sbjct: 119 DYLAKISLADLI 130 >gi|262370470|ref|ZP_06063796.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046] gi|262314812|gb|EEY95853.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046] Length = 157 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V ++RG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L V++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARRADEITVLAVIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + ++ LV R +++K+ Sbjct: 119 DYLAKITLADLVA-RDNVQKV 138 >gi|251788733|ref|YP_003003454.1| DNA-binding transcriptional regulator IscR [Dickeya zeae Ech1591] gi|247537354|gb|ACT05975.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591] Length = 164 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + +I + V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGKDSAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L +++ LV N+ + Sbjct: 119 GFLNNITLDELVNNKEIL 136 >gi|46201636|ref|ZP_00054636.2| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 140 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ N I++IAE IS+ L K++ L ++G +ETVRG+ Sbjct: 1 MRLTLHTDYALRVLVHVGRQNGDLVTINEIAERYGISKNHLTKVVHQLGRSGYLETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GGVRL R + + + ++ TE+ F + C D C L C L L+AFF Sbjct: 61 YGGVRLLRQPEDVKLGQFIRETEDDFALVRCMRCDSPDECRLNAGCIARDALSSGLSAFF 120 Query: 120 DVLTQYSIECLVRNRSS 136 VL Y++ ++ N Sbjct: 121 KVLDGYTLADMLDNERQ 137 >gi|229828909|ref|ZP_04454978.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM 14600] gi|229792072|gb|EEP28186.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM 14600] Length = 144 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A +N P I IA ISE +L +I+ L +AG V +VRG Sbjct: 1 MKISTKGRYALRLMLDLAAYNTGEPISIKDIARRQAISEKYLEQIISVLNRAGYVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + T+ + + TE S E K D V RK A Sbjct: 61 AGGGYLLTRDPKEYTVGMIFRLTEGSLAPVEGLEDGKPDLADHPELVTYDVYRKIYEAVN 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 V+ ++ LV ++ + + Sbjct: 121 QVVDHITLADLVDHQRQLADNY 142 >gi|149190102|ref|ZP_01868379.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1] gi|148836132|gb|EDL53092.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1] Length = 168 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGAEASDIAIGTVIAAVDESVDATKCAG--KGDCQGGTRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 119 DFLNNITLGELMVDNEVLE 137 >gi|240949678|ref|ZP_04754013.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] gi|240295936|gb|EER46612.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] Length = 150 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ AIH + P ++ IA+ IS +L ++ L + GIV +VRG Sbjct: 1 MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + I++ ++ A E+ V +C S +C C ++ + Sbjct: 61 PGGGYKLEKSPKDISVGMIIAAVNENVDVTKCKGSG--NCRKDSKCLTHTLWERLEEQIG 118 Query: 120 DVLTQYSIECLVRNRSS 136 L S+E LV+ S Sbjct: 119 VFLNTVSLEDLVKENSD 135 >gi|299131984|ref|ZP_07025179.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2] gi|298592121|gb|EFI52321.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2] Length = 149 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 3/146 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +DY +R+LMY A+ + I + AEA IS L K+ L +AG ++ VRG Sbjct: 1 MRLTNFSDYALRILMYAAVVPDGRLITIEETAEAYGISRAHLMKVANQLTRAGYMKAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + D+I + DV++ATE F + EC + C + C L L +AL AF Sbjct: 61 RSGGLTLAKRPDRIRLSDVLRATEPDFALVECMTADN-RCMISPRCRLRGALNEALAAFL 119 Query: 120 DVLTQYSIECLV-RNRSSIKKIFNAG 144 + L Y++ L+ + S + + G Sbjct: 120 ETLDGYTLADLILSPKDSARPLLAIG 145 >gi|15807088|ref|NP_295817.1| rrf2 protein [Deinococcus radiodurans R1] gi|6459891|gb|AAF11645.1|AE002045_5 rrf2 protein [Deinococcus radiodurans R1] Length = 197 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + +AE +S+ +L +I L +AG ++++RG Sbjct: 46 MWVSTKAQYGLRALVEIGRRGGEAVPLKDVAERQGLSQHYLEQIASNLRRAGFIKSIRGA 105 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA+ I DVV A E S C + C CG ++ + A D Sbjct: 106 HGGYRLARPAEAINAYDVVTALEGSIAPVSCVEDDHV-CDSRNVCGTQNLWFRVDAALRD 164 Query: 121 VLTQYSIECLVRN 133 VL ++ L+ Sbjct: 165 VLGNTTLADLIAE 177 >gi|167745701|ref|ZP_02417828.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662] gi|317472704|ref|ZP_07932019.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|167655013|gb|EDR99142.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662] gi|316899881|gb|EFV21880.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 165 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A+ + P +S I+E IS +L ++L L KAG+V+++RG Sbjct: 14 MKLSTKGRYGLRAIVDIAVFGEKEPAAVSAISERQDISIRYLEQLLSKLKKAGLVKSIRG 73 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117 +GG L A+ I++ DV++A E +C + C C +V ++ ++ Sbjct: 74 AQGGYVLAGNAEDISVGDVLRALEGDLTPVDCTELTDTEETCSGSKYCVTKTVWKRINDS 133 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 + ++ L ++++ Sbjct: 134 IAKTVDSIYLDELADEARAVQQ 155 >gi|292491985|ref|YP_003527424.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus halophilus Nc4] gi|291580580|gb|ADE15037.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus halophilus Nc4] Length = 166 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+ IS +L ++ L K G+V++ RG Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPITLADISRRQGISLSYLEQLFARLRKKGLVDSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A++I+++DV+ A +ES C +C C + + Sbjct: 61 PGGGYRLSREAEKISVIDVISAVDESVDATRCRGLK--NCQGDQRCLTHELWEDLSRQIY 118 Query: 120 DVLTQYSIECLVRNRS 135 + L++ ++ LV+ R Sbjct: 119 EFLSRITLGELVQRRD 134 >gi|114563595|ref|YP_751108.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella frigidimarina NCIMB 400] gi|114334888|gb|ABI72270.1| transcriptional regulator, BadM/Rrf2 family [Shewanella frigidimarina NCIMB 400] Length = 153 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSATGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I++ VV A +ES C K +C C S+ Sbjct: 61 PGGGYRLGLEAVDISVGMVVHAVDESVDATRC--QGKGNCQSGTRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L++ R Sbjct: 119 DFLDGISLAGLMQKRD 134 >gi|295102114|emb|CBK99659.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii L2-6] Length = 149 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQQLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + T ++++A E S C S +CP+ C + Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSDQCFTLPFWAGLDDVIN 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + ++E L ++ ++K+ Sbjct: 121 QYIDSVTLEQLAQSLPAVKE 140 >gi|221133857|ref|ZP_03560162.1| transcriptional regulator, BadM/Rrf2 family protein [Glaciecola sp. HTCC2999] Length = 160 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P + I+ IS +L ++ L K +VE++RG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQGPVSLYDISMRQEISLSYLEQLFSKLRKQHLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PA++I + +V+ A ES +C + K DC C ++ + + Sbjct: 61 PGGGYRLGKPANEIAVGEVIAAVNESIDATKC--NGKADCQGGEKCLTHNLWQDLSDRIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+ + Sbjct: 119 KFLDNITLGELMAKQD 134 >gi|88858497|ref|ZP_01133139.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas tunicata D2] gi|88820114|gb|EAR29927.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas tunicata D2] Length = 162 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + L+ A+H + P +++I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTALLDVALHTNVGPVCLAEISERQEISLSYLEQLFARLRKQGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I++ DV+ A +ES C C C S+ Sbjct: 61 PGGGYLLGKEASEISVGDVISAVDESVDATRCHGEGG--CQKGVRCLTHSLWSDLSIRIE 118 Query: 120 DVLTQYSIECLVRNRS 135 D L ++ LV R Sbjct: 119 DFLNNITLAELVAKRD 134 >gi|148825338|ref|YP_001290091.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE] gi|260582529|ref|ZP_05850319.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae NT127] gi|148715498|gb|ABQ97708.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE] gi|260094340|gb|EEW78238.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae NT127] Length = 150 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P++QI++ ++ A E+ V +C +C C + + Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + ++ LV R+ ++ Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138 >gi|253988842|ref|YP_003040198.1| DNA-binding transcriptional regulator IscR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780292|emb|CAQ83453.1| hth-type transcriptional regulator iscr [Photorhabdus asymbiotica] Length = 164 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I + +V+ A +ES C K C C ++ R + Sbjct: 61 PGGGYLLGRDAGKIVVAEVIFAVDESVDATRC--QGKEGCQGGDRCLTHALWRDLSDRIT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ LV N+ + Sbjct: 119 SFLSSISLKELVNNQEVL 136 >gi|113970076|ref|YP_733869.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4] gi|114047317|ref|YP_737867.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7] gi|117920724|ref|YP_869916.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3] gi|126174611|ref|YP_001050760.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS155] gi|153000907|ref|YP_001366588.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS185] gi|160875615|ref|YP_001554931.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS195] gi|217973136|ref|YP_002357887.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica OS223] gi|304408985|ref|ZP_07390606.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|307302988|ref|ZP_07582743.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] gi|113884760|gb|ABI38812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4] gi|113888759|gb|ABI42810.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7] gi|117613056|gb|ABK48510.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3] gi|125997816|gb|ABN61891.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS155] gi|151365525|gb|ABS08525.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS185] gi|160861137|gb|ABX49671.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS195] gi|217498271|gb|ACK46464.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS223] gi|304352806|gb|EFM17203.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS183] gi|306913348|gb|EFN43770.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica BA175] Length = 153 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A+ I++ VV A +ES C +C C S+ Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L++ R Sbjct: 119 DFLDGISLAGLMQKRD 134 >gi|315267803|gb|ADT94656.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica OS678] Length = 173 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 21 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A+ I++ VV A +ES C +C C S+ Sbjct: 81 PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 138 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L++ R Sbjct: 139 DFLDGISLAGLMQKRD 154 >gi|227498969|ref|ZP_03929106.1| transcriptional regulator [Acidaminococcus sp. D21] gi|226904418|gb|EEH90336.1| transcriptional regulator [Acidaminococcus sp. D21] Length = 141 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A++ + I ++E ISE +L +I+ L +A +V++ RG Sbjct: 1 MKISTKGRYALRLMLDLAMNGKENFVPIRSVSERQEISEKYLEQIITALSRAKLVKSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + ++ T ++++A E S C C C ++ ++ A Sbjct: 61 AQGGYKLVKAPEEYTTGEILRAVEGSLAPVACLEPGHTVCARAKKCITLNLYKEIQEAVD 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 V+ + ++ LV + + K Sbjct: 121 SVVDRTTLADLVAQQEAQDK 140 >gi|117621543|ref|YP_856282.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562950|gb|ABK39898.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 167 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + I++ V+ A +ES +C K C C S+ R Sbjct: 61 PGGGYRLGLAPNAISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L ++ LV +++ +++I Sbjct: 119 SFLGDITLAELV-DQADVRRIAG 140 >gi|291618422|ref|YP_003521164.1| YfhP [Pantoea ananatis LMG 20103] gi|291153452|gb|ADD78036.1| YfhP [Pantoea ananatis LMG 20103] Length = 170 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 6 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A+ I + +V+ A +ES +C K C C + R Sbjct: 66 PGGGYLLGKEANAIAVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 123 Query: 120 DVLTQYSIECLVRNRSSI 137 + L ++ LV N+ + Sbjct: 124 EFLNNITLAELVNNQEIL 141 >gi|94984606|ref|YP_603970.1| BadM/Rrf2 family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554887|gb|ABF44801.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus geothermalis DSM 11300] Length = 153 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + ++E IS+ +L +I L +AG +++VRG Sbjct: 1 MWVSTKAQYGLRALIEIGRRGGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA I +VV A E S C + C CG + + A D Sbjct: 61 HGGYRLARPASAINAYEVVTAMEGSIAPVSCVEEDHV-CDKGNVCGTLELWHRVDTALRD 119 Query: 121 VLTQYSIECLVRN--RSSIKKIFN 142 VL ++ L+ + R ++ Sbjct: 120 VLGATTLADLIADSERQEHARLLQ 143 >gi|145638712|ref|ZP_01794321.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII] gi|145272307|gb|EDK12215.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII] gi|309750202|gb|ADO80186.1| transcriptional regulator IscR [Haemophilus influenzae R2866] Length = 150 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNTDGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P++QI++ ++ A E+ V +C +C C + + Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + ++ LV R+ ++ Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138 >gi|149908844|ref|ZP_01897504.1| Rrf2 family protein [Moritella sp. PE36] gi|149808118|gb|EDM68059.1| Rrf2 family protein [Moritella sp. PE36] Length = 157 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P +++I+E IS +L ++ L + +V + RG Sbjct: 1 MRLTSKGRYAVTAMIDLALHADMKPVPLAEISERQSISLSYLEQLFSRLRRKNLVASARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L I++ ++ A +E+ +C +S C C S+ Sbjct: 61 PGGGYKLGMLPGDISVGMIIDAVDENVKATKCDSSGG--CNDGKRCLTHSLWDDLSKRIS 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 D L S+ L+ N IK+I N Sbjct: 119 DFLDNISLADLMTNN-EIKQIVN 140 >gi|56708970|ref|YP_165015.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56680655|gb|AAV97320.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 160 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 73/143 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K +DY +R+L++ A +IA+ + L KI Q L G VE+VRGR Sbjct: 1 MQISKFSDYALRILIHLATSEGGLMSTREIADLQQLPFNHLAKISQWLTHEGYVESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL P D I+I +++ +E + EC C + +CGL +L +A AFF Sbjct: 61 HGGMRLALPPDAISIGGLLRKSERGTPLVECMKEGGGCCVMTPACGLLPILIEAQEAFFH 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L +++ ++ ++ + A Sbjct: 121 SLDGSTLQDVLSGNRGMQNLIRA 143 >gi|87118505|ref|ZP_01074404.1| rrf2 family protein [Marinomonas sp. MED121] gi|86166139|gb|EAQ67405.1| rrf2 family protein [Marinomonas sp. MED121] Length = 165 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 11/153 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P ++ I+ IS +L ++ L K +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDNGPVSLADISLRQGISLSYLEQLFAKLRKQTLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R DQI + +V A ES C K DC +C + + Sbjct: 61 PGGGYRLSRANDQIFVAQIVDAVNESVDATGC--KGKNDCQSGTTCLTHHLWCDLSDQIH 118 Query: 120 DVLTQYSIEC--------LVRNRSSIKKIFNAG 144 D L+Q S+ LV R +++ +AG Sbjct: 119 DFLSQISLAQLVSRKDVRLVAQRQENEQLVHAG 151 >gi|225570685|ref|ZP_03779708.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM 15053] gi|225160512|gb|EEG73131.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM 15053] Length = 181 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R ++ A + + P IS IA ISE +L +++ + KAG+V+++RG Sbjct: 30 MKLSTKGRYGLRAIIDLARYAETEPVSISSIAARQEISERYLEQLVGLMKKAGLVKSIRG 89 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 GG L R I++ DV++A E S +C A + C C V +K + Sbjct: 90 AGGGYVLARDMKDISVGDVLRALEGSLEPVKCAAFYAEEGCMASDGCVTKYVWQKINDNI 149 Query: 119 FDVLTQYSIECLV 131 + + ++ LV Sbjct: 150 NHTVDEIKLDELV 162 >gi|160941172|ref|ZP_02088509.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC BAA-613] gi|158435733|gb|EDP13500.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC BAA-613] Length = 131 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ AIH D P +I IA IS +L +I+ L +AG V ++RG +GG L RP+ Sbjct: 1 MVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGFVRSIRGNQGGYYLARPSSD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 T+ +++ TE S +C + K C C + R+ A V+ +Y++E LV+ Sbjct: 61 YTVGSILRITEGSLAPVDCLSGDKNPCTRQMDCVTLRLWRELDEAISGVVDKYTLEDLVQ 120 Query: 133 NRSSIKKIF 141 + S+K + Sbjct: 121 WQKSMKDNY 129 >gi|120554049|ref|YP_958400.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120323898|gb|ABM18213.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei VT8] Length = 165 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+ IS +L ++ L + +V +VRG Sbjct: 1 MKLTTKGRYAVTAMLDLALHAGQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD++ + +VV A ES C +K DC C + + Sbjct: 61 PGGGYRLSRSADEVFVAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L++ S+ L+R + I+++ + Sbjct: 119 QFLSEISLGDLMR-KHEIRQVAD 140 >gi|15602182|ref|NP_245254.1| hypothetical protein PM0317 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720554|gb|AAK02401.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 154 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P +S I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA++I++ V+ A E+ V C DC C S+ ++ Sbjct: 61 PGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRG--DCQEGTECLTHSLWKELSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L + ++E LV + Sbjct: 119 AFLNEITLEELVEKNRQKR 137 >gi|257439947|ref|ZP_05615702.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] gi|257197554|gb|EEU95838.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] Length = 149 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + T ++++A E S C S +CP+ C Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSEQCFTLPFWAGLDEVIN 120 Query: 120 DVLTQYSIECLVRN 133 + ++E L ++ Sbjct: 121 QYIDSVTLEQLAQS 134 >gi|269140159|ref|YP_003296860.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda EIB202] gi|267985820|gb|ACY85649.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda EIB202] gi|304559993|gb|ADM42657.1| Iron-sulfur cluster regulator IscR [Edwardsiella tarda FL6-60] Length = 165 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I I V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKEASEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHALWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L S+ LV N+ + Sbjct: 119 GFLNNISLAELVNNQEVM 136 >gi|222055077|ref|YP_002537439.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221564366|gb|ACM20338.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 141 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ A+++ P + +IA+ I +L ++ L GIV ++RG Sbjct: 1 MRLSTRAQYAVRAMVDLALYSTSKPVSLKEIAQREEIPLSYLEQLFFRLKNGGIVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + I + ++V EE C C + C ++ + Sbjct: 61 PGGGYILARESSLIKVGEIVVTVEEPLSPVACMDEGSTGCSRISQCVTHNIWKGLGEKIR 120 Query: 120 DVLTQYSIECLVRN 133 L ++E L + Sbjct: 121 GFLDGITLEDLAQE 134 >gi|218289783|ref|ZP_03493983.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|258510985|ref|YP_003184419.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240074|gb|EED07259.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|257477711|gb|ACV58030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 144 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ RT+YG+R ++ A ++ P + IAEA I E FL +I+ L +A +V +VR Sbjct: 1 MKISSRTEYGLRAMVALARMAGHERPVPLRAIAEAEAIPEPFLDQIMAKLRRANLVTSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKAL 115 G GG L RPA++I++ ++V+ E S C D C L C SV + Sbjct: 61 GVNGGYHLSRPAEEISVGELVRVLEGSLAPIACVDDADPDSASCDLYAGCHARSVWVRVT 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138 A L Q S+ ++ + ++ Sbjct: 121 KAIARALDQLSLADVMHDDVPLQ 143 >gi|258512207|ref|YP_003185641.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478933|gb|ACV59252.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 140 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT TDY +RVL+Y A D ++ +IA IS L K + L + G +ETVRG Sbjct: 1 MNLTLFTDYALRVLIYTANQPDGRLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL P + I I DVV+A E+ F V CFA+ C L+ C L L +A++AF Sbjct: 61 RGGGMRLAMPPNDIRIGDVVRAMEDDFAVVGCFAND--SCVLLPGCKLRRALGEAVDAFL 118 Query: 120 DVLTQYSI 127 + L QY++ Sbjct: 119 ETLNQYTL 126 >gi|262372258|ref|ZP_06065537.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter junii SH205] gi|262312283|gb|EEY93368.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter junii SH205] Length = 157 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARIASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRN 133 D L + ++ L+ Sbjct: 119 DYLAKITLADLIAR 132 >gi|24373816|ref|NP_717859.1| Rrf2 family protein [Shewanella oneidensis MR-1] gi|120598676|ref|YP_963250.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1] gi|146293246|ref|YP_001183670.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens CN-32] gi|24348214|gb|AAN55303.1|AE015668_4 Rrf2 family protein [Shewanella oneidensis MR-1] gi|120558769|gb|ABM24696.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. W3-18-1] gi|145564936|gb|ABP75871.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens CN-32] gi|319426240|gb|ADV54314.1| transcriptional regulator, BadM/Rrf2 family [Shewanella putrefaciens 200] Length = 153 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A+ I++ VV A +ES C +C C S+ Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L++ R Sbjct: 119 DFLDGISLAGLMQKRD 134 >gi|46198394|ref|YP_004061.1| rrf2 family protein [Thermus thermophilus HB27] gi|55980424|ref|YP_143721.1| rrf2 family protein, transcriptional regulator [Thermus thermophilus HB8] gi|46196016|gb|AAS80434.1| rrf2 family protein [Thermus thermophilus HB27] gi|55771837|dbj|BAD70278.1| rrf2 family protein, transcriptional regulator [Thermus thermophilus HB8] Length = 149 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++AEA IS+ +L +I L AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRAPRAVPLKEVAEAQGISQHYLEQIAAQLRNAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL RP +++T L+VV+A E S C + C VG C + R+ A Sbjct: 61 KGGYRLARPPEKVTALEVVEALEGSLAPVSCLEDPE-SCDKVGRCSTELLWRRVDLAMRQ 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R ++ Sbjct: 120 VLGGTTLKDLIEERRLLE 137 >gi|110678148|ref|YP_681155.1| hypothetical protein RD1_0790 [Roseobacter denitrificans OCh 114] gi|109454264|gb|ABG30469.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 156 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 73/137 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT T++ +R L A+ + R+ + ++ + KI+ L AG V T RGR Sbjct: 1 MKLTSYTNFALRSLQLAALKSPELIRVDDVVRVHGLARPHIVKIVHELGVAGYVVTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL +PA +I I DVV+ TE + ECF K CPL+G C L+ L+KA AF D Sbjct: 61 NGGFRLGKPAKEIVIGDVVRLTEGPLDLVECFNPEKNTCPLIGICKLSRALQKATRAFMD 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL ++ + NR + Sbjct: 121 VLDDLTLADIAANRDDL 137 >gi|90414467|ref|ZP_01222443.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK] gi|161936286|ref|YP_131442.2| transcriptional repressor NsrR [Photobacterium profundum SS9] gi|119372260|sp|Q6LM38|NSRR_PHOPR RecName: Full=HTH-type transcriptional repressor nsrR gi|90324472|gb|EAS41031.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK] Length = 144 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V+TVRG Sbjct: 1 MQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL PA++I + DVV+ATE + C C + +C L +L A +AF Sbjct: 61 KNGGIRLGMPANRIILGDVVRATE-PLQIVNCSEDF---CHITPACQLKGILASARSAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L ++++ L+ N + + + Sbjct: 117 AELDKHTLLSLIDNNPPLLVLLD 139 >gi|300717962|ref|YP_003742765.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299063798|emb|CAX60918.1| Transcriptional regulator [Erwinia billingiae Eb661] Length = 165 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +D I + V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKSSDAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L S+ LV N+ ++ Sbjct: 119 DFLNNISLAELVNNQEILE 137 >gi|83310417|ref|YP_420681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945258|dbj|BAE50122.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 140 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ H+ I++IAE IS+ L K++ L ++G +ETVRG+ Sbjct: 1 MRLTLHTDYALRVLVHVGRHDGDLVTINEIAECYGISKNHLTKVVHQLGRSGYLETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GGVRL R + + + + ++ TEE F + C D C L C L L+AFF Sbjct: 61 YGGVRLLRQPEDVKLGEFIRETEEDFALVRCMRCDTPDECRLNAGCIARDALSSGLSAFF 120 Query: 120 DVLTQYSIECLVRNRSS 136 VL Y++ ++ + Sbjct: 121 KVLDGYTLADMLEHERQ 137 >gi|269836430|ref|YP_003318658.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter thermophilus DSM 20745] gi|269785693|gb|ACZ37836.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter thermophilus DSM 20745] Length = 143 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +YG+R ++ A ++ P ++ IA + +L +++ PL +AG+V + RG Sbjct: 1 MKVSTRGEYGMRAMVSLARMYGQGPVPLAAIASDSAVPAAYLEQLMGPLRRAGLVTSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116 GG L RP ++ + +V + E C + D CP++ C +V K + Sbjct: 61 AHGGYELARPPAEVRVGEVYRVMEGPIAPMACVSEDSGDEDLCPIIDGCATRAVWIKVRD 120 Query: 117 AFFDVLTQYSIECLVRNRSS 136 + L ++ L+ ++ Sbjct: 121 SIAAALDSTTLADLLDQHAA 140 >gi|126668574|ref|ZP_01739528.1| rrf2 family protein [Marinobacter sp. ELB17] gi|126626979|gb|EAZ97622.1| rrf2 family protein [Marinobacter sp. ELB17] Length = 165 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+ IS +L ++ L + +V ++RG Sbjct: 1 MKLTTKGRYAVTAMLDLALHGDHGPVTLADISARQEISLSYLEQLFSRLRRRHLVASIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A+ I I +VV+A ES C +K DC C + Sbjct: 61 PGGGYRLSRGANAIFISEVVEAVSESLDTTRC--GNKGDCQSGEKCLTHHLWSDLSEQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L S+ L+ R I+++ + Sbjct: 119 QFLDNISLNDLMEKR-EIRQVAD 140 >gi|326385353|ref|ZP_08206998.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326210159|gb|EGD60931.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 141 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +RV++Y H D I++IA A IS+ L K++ L G V+ +RGR Sbjct: 1 MRLTRFSDYAVRVIIYLGAHTDRLCSIAEIARAYDISQNHLMKVVSDLAAHGYVQALRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA +I I +++ TE + + C DC L G+C L L +ALNAFF Sbjct: 61 NGGIRLGRPAGEINIGKLIRHTEGTIDLVGC-----EDCKLAGACDLPDPLNEALNAFFA 115 Query: 121 VLTQYSIECLV 131 VL +Y++ ++ Sbjct: 116 VLERYTLADVL 126 >gi|88706864|ref|ZP_01104564.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71] gi|88698914|gb|EAQ96033.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71] Length = 147 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 80/141 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT ++Y +R+LMYCA+H RI +A A IS+ L K + L + G + TVRGR Sbjct: 1 MRLTAYSNYSMRILMYCAMHPGQLVRIQDVATAFDISKAHLLKAARHLGQLGYLSTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L A++I I V++A E+S ECF S CP+ G+C LT + R+ L AF+ Sbjct: 61 SGGIQLGMAAERIDIGAVIRAVEDSGEFVECFNSSTNSCPIAGTCKLTGLFRRGLEAFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L ++ LV + ++ Sbjct: 121 ELDGVTLADLVGTGTELRSRL 141 >gi|77165125|ref|YP_343650.1| Iron-sulphur cluster assembly transcription factor IscR [Nitrosococcus oceani ATCC 19707] gi|254434832|ref|ZP_05048340.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus oceani AFC27] gi|76883439|gb|ABA58120.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207091165|gb|EDZ68436.1| iron-sulfur cluster assembly transcription factor IscR [Nitrosococcus oceani AFC27] Length = 166 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A +I+I+DV+ A +E+ C +C C + + Sbjct: 61 PGGGYRLSREAGKISIIDVITAVDENMDATRCGGLK--NCQENQRCLTHDLWEDLSRQIY 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L + ++ LV+ R IKK+ Sbjct: 119 EFLARITLGELVQ-RDDIKKV 138 >gi|88800419|ref|ZP_01115984.1| hypothetical protein MED297_07531 [Reinekea sp. MED297] gi|88776866|gb|EAR08076.1| hypothetical protein MED297_07531 [Reinekea sp. MED297] Length = 155 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T+ TDY +RVL+Y + ++P RI +AE+ IS+ L K++Q L G V+ RGR Sbjct: 1 MNITRFTDYALRVLVYLNVDTEHPARIQDVAESYDISKNHLMKVVQVLNAQGYVKATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RPA +I I ++V+ EE + ECF + C + +C + + A+ FF Sbjct: 61 NGGIALSRPASEINIGELVRYFEEGSKLVECFGADN-QCVITPACQIKQMFTGAMEQFFC 119 Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142 L Q+++ + + + ++ + Sbjct: 120 HLDQFTLADMTVPSQQKLLAELLH 143 >gi|303238938|ref|ZP_07325469.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] gi|302593571|gb|EFL63288.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] Length = 150 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++ AIH+ + + I+E C +SE ++ +I L +AGIV+++RG Sbjct: 1 MKISTKGRYGLEAIVDLAIHSAEGHVNLKSISERCGMSEAYILQIFLILRRAGIVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG L + +IT+ DV+ A E C + C GSC ++A Sbjct: 61 AQGGYVLAKEPSEITVGDVLTALEGPLAPVACVVTEAEHTCERYGSCATRGFWESIMSAL 120 Query: 119 FDVLTQYSIECLVR 132 DV +I LV Sbjct: 121 NDVANSITIADLVE 134 >gi|329297952|ref|ZP_08255288.1| transcriptional repressor NsrR [Plautia stali symbiont] Length = 147 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + I+++ + +S + KI+ L +AG V RG Sbjct: 1 MQLTSFTDFGLRALIYMATLPQGQQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL ++I I DVV+ E + C +C + +C L S L A+ F Sbjct: 61 KNGGIRLGMDPEKIVIGDVVRKME-PLQLVNC-----KECAINPACRLRSALNNAVQLFL 114 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 +Y++ LV+N S+ I Sbjct: 115 QEQDKYTLADLVQNNDSLYHIL 136 >gi|254427452|ref|ZP_05041159.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax sp. DG881] gi|196193621|gb|EDX88580.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax sp. DG881] Length = 156 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 3 MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R ++QI + V+ A +ES C DC +C + + Sbjct: 63 PGGGYQLSRESEQIDVAAVIAAVDESVDATRC--GGHGDCQEGDTCLTHHLWCDLSDQIQ 120 Query: 120 DVLTQYSIECLVRNRS 135 D L+ ++ LV + Sbjct: 121 DFLSGITLGELVARQE 136 >gi|163734089|ref|ZP_02141530.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161392625|gb|EDQ16953.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 149 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+L+ + S+IA +SE L K+ LV+ G V + RGR Sbjct: 1 MQLDKFTDYALRILITLVVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP ++I + +VV+ V ECF ++K C ++ +CGL L +A AFF Sbjct: 61 NGGLTLARPPERILVGEVVRTMTRKEHVVECFGTNK-SCLILPACGLRQPLAEAQEAFFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L Y++ + ++R S+ + N+ Sbjct: 120 TLDHYTLADVTQSRHSLGALLNS 142 >gi|183599755|ref|ZP_02961248.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827] gi|188022016|gb|EDU60056.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827] Length = 165 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFARLRKNELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ADQI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDADQIFVAQVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ LV+N+ I Sbjct: 120 SFLSSISLDELVKNQEVI 137 >gi|78222091|ref|YP_383838.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193346|gb|ABB31113.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 142 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ ++H++ P + IA I +L ++ L + IVE+VRG Sbjct: 1 MRLSTRAQYAVRAMVDLSLHSEGRPVSLKDIALREDIPLNYLEQLFNRLRRGAIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + I + ++V EE C K C +C +V Sbjct: 61 PGGGYLLARESSAIRVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHNVWEMLGERIR 120 Query: 120 DVLTQYSIECLV 131 L ++E LV Sbjct: 121 TFLDSITLEDLV 132 >gi|139438966|ref|ZP_01772426.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC 25986] gi|133775677|gb|EBA39497.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC 25986] Length = 142 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + +IA ISE +L IL LV+A ++ +RG Sbjct: 1 MLVSTKGRYALRVMVDLAEHQAAGRIPLKEIAARQGISEKYLENILATLVRANMLSGMRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L RP +Q T+ ++++ TE S C C C V + Sbjct: 61 KGGGYVLTRPPEQYTVGEILRLTEGSLAPVACLDGDCKGCSRSDECPTLDVWKNLDKLIN 120 Query: 120 DVLTQYSIECLVR 132 D L +++ LV Sbjct: 121 DYLDGVTLDQLVA 133 >gi|39995641|ref|NP_951592.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39982404|gb|AAR33865.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|298504663|gb|ADI83386.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sulfurreducens KN400] Length = 154 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R + A ++ P ++ I+ IS +L +I Q L +AGI+++ RG Sbjct: 1 MKLSTKSRYGLRAIFDIAYNSGSLPAQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNA 117 +GG L + ++IT+ DV+ ATE + EC + K +C G+C + +A Sbjct: 61 PQGGYCLAKKPEEITVADVLLATERDINLVECTSKRKKKGECTFDGTCVTQELWCEAGAK 120 Query: 118 FFDVLTQYSIECLVRNRSSI 137 D + ++++ L + Sbjct: 121 LLDFFSGFTVKDLCDRGQQM 140 >gi|145628736|ref|ZP_01784536.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae 22.1-21] gi|144979206|gb|EDJ88892.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae 22.1-21] Length = 150 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P++QI++ ++ A E+ V +C +C C + Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + ++ LV R+ ++ Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138 >gi|329297589|ref|ZP_08254925.1| DNA-binding transcriptional regulator IscR [Plautia stali symbiont] Length = 165 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKDAGAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 YFLNNITLAELVNNQEIL 136 >gi|145299544|ref|YP_001142385.1| ISC operon transcriptional regulator IscR [Aeromonas salmonicida subsp. salmonicida A449] gi|142852316|gb|ABO90637.1| isc operon transcriptional regulator IscR [Aeromonas salmonicida subsp. salmonicida A449] Length = 167 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL D I++ V+ A +ES +C K C C S+ R Sbjct: 61 PGGGYRLGLTPDAISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L ++ LV ++ +++I Sbjct: 119 SFLGDITLAELV-GQADVRRIAG 140 >gi|89095323|ref|ZP_01168241.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanospirillum sp. MED92] gi|89080398|gb|EAR59652.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanospirillum sp. MED92] Length = 164 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHEGKGPISLADISERQGISLSYLEQLFAKLRRNELVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R +I + +V+ A ES C + + DC +C + + Sbjct: 61 PGGGYQLNREQPEINVAEVIDAVNESVDATGC--NRQGDCQGGETCLTHHLWCDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 L+ S+ LV + Sbjct: 119 GFLSGISLADLVARKD 134 >gi|16272327|ref|NP_438540.1| hypothetical protein HI0379 [Haemophilus influenzae Rd KW20] gi|145634625|ref|ZP_01790334.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA] gi|260580558|ref|ZP_05848386.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae RdAW] gi|1175234|sp|P44675|Y379_HAEIN RecName: Full=Putative HTH-type transcriptional regulator HI_0379 gi|1573349|gb|AAC22037.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|145268170|gb|EDK08165.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA] gi|260092900|gb|EEW76835.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus influenzae RdAW] Length = 150 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P++QI++ ++ A E+ V +C +C C + Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + ++ LV R+ ++ Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138 >gi|184157980|ref|YP_001846319.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|213157174|ref|YP_002319219.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057] gi|215483548|ref|YP_002325767.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|239501899|ref|ZP_04661209.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB900] gi|260555142|ref|ZP_05827363.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter baumannii ATCC 19606] gi|301345048|ref|ZP_07225789.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB056] gi|301510365|ref|ZP_07235602.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB058] gi|301595498|ref|ZP_07240506.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB059] gi|332851744|ref|ZP_08433669.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013150] gi|332865881|ref|ZP_08436661.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013113] gi|332874439|ref|ZP_08442342.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6014059] gi|183209574|gb|ACC56972.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|193077275|gb|ABO12061.2| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978] gi|213056334|gb|ACJ41236.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057] gi|213987411|gb|ACJ57710.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|260411684|gb|EEX04981.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter baumannii ATCC 19606] gi|322508298|gb|ADX03752.1| iscR [Acinetobacter baumannii 1656-2] gi|323517924|gb|ADX92305.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332729751|gb|EGJ61086.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013150] gi|332734931|gb|EGJ66017.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6013113] gi|332737283|gb|EGJ68207.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii 6014059] Length = 157 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L++++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLV 131 D L + ++ L+ Sbjct: 119 DYLAKITLANLI 130 >gi|145636353|ref|ZP_01792022.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH] gi|148827518|ref|YP_001292271.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG] gi|319775754|ref|YP_004138242.1| transcriptional regulator [Haemophilus influenzae F3047] gi|329123595|ref|ZP_08252155.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus aegyptius ATCC 11116] gi|145270518|gb|EDK10452.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH] gi|148718760|gb|ABQ99887.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG] gi|301169081|emb|CBW28678.1| DNA-binding transcriptional repressor [Haemophilus influenzae 10810] gi|317450345|emb|CBY86561.1| predicted transcriptional regulator [Haemophilus influenzae F3047] gi|327469794|gb|EGF15259.1| iron-sulfur cluster assembly transcription regulator IscR [Haemophilus aegyptius ATCC 11116] Length = 150 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P++QI++ ++ A E+ V +C +C C + Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHKLWEDLSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + ++ LV R+ ++ Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138 >gi|93006349|ref|YP_580786.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394027|gb|ABE75302.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter cryohalolentis K5] Length = 181 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 39/181 (21%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT +DY +R L+Y A + IS IA + IS+ L KI+Q L + G +++VR Sbjct: 1 MRLTNYSDYALRSLIYLATKPEPTLLANISDIANSYHISKSHLTKIIQQLGQLGYIDSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-------------------- 98 G+ GG+RL I + +++K E F + ECF+++ +D Sbjct: 61 GKNGGIRLAHAPKDINLGELIKKIEPDFALVECFSTNSLDSSIADINSAVINDEKNASAN 120 Query: 99 -----------------CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 C + C L VL +AL AF VL +Y++ ++ N+ + + Sbjct: 121 DMSLKLIDETVSHIASGCIISPVCQLKQVLAEALTAFIAVLERYTLADIIENKDELAALL 180 Query: 142 N 142 + Sbjct: 181 S 181 >gi|332141977|ref|YP_004427715.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551999|gb|AEA98717.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 161 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I I +V++A +ES C + DC C S+ + + Sbjct: 61 PGGGYLLGREASEIAIGEVIRAVDESIDATRC--QGQADCQGGDRCLTHSLWQDLSDRIA 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+ R Sbjct: 119 AFLNSITLGELMAKRD 134 >gi|171914811|ref|ZP_02930281.1| Putative transcriptional regulator [Verrucomicrobium spinosum DSM 4136] Length = 151 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+L+Y H D ++AE +S L K+ + L + G + + RG Sbjct: 1 MQLTYHTDYALRLLIYLLSHPDRNVSTREMAEFYGVSVNHLVKVAKSLTQGGWLVSSRGI 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L + + + D+V+ TE + + ECF CP+ SC L +L +A AFFD Sbjct: 61 GGGVMLAKHTPEAKVGDIVRYTE-NTDIVECFQPKTNTCPIHRSCDLKPILFQARRAFFD 119 Query: 121 VLTQYSIECLVRNRSSIKKI 140 VL +++ L R+ + + + Sbjct: 120 VLDSFTVRDLARHPNELLAL 139 >gi|269798676|ref|YP_003312576.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Veillonella parvula DSM 2008] gi|294792648|ref|ZP_06757795.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] gi|269095305|gb|ACZ25296.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula DSM 2008] gi|294456547|gb|EFG24910.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] Length = 139 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + + +++ A E+S + C CP+ C + + + F Sbjct: 61 KYGGYRLVKDPSEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120 Query: 120 DVLTQYSIECLVRNR 134 V+ S++ ++ ++ Sbjct: 121 HVMEHVSLQDVMDHK 135 >gi|149375017|ref|ZP_01892790.1| rrf2 family protein [Marinobacter algicola DG893] gi|149360906|gb|EDM49357.1| rrf2 family protein [Marinobacter algicola DG893] Length = 165 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I+ IS +L ++ L + +V ++RG Sbjct: 1 MRLTTKGRYAVTAMLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRHKLVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD + I +VV A ES C +K DC C + + Sbjct: 61 PGGGYRLSREADSVFIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 L+ S+ L+R R Sbjct: 119 QFLSDISLGDLMRKRE 134 >gi|85712744|ref|ZP_01043789.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] gi|85693476|gb|EAQ31429.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] Length = 155 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+ P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVAMFAKQAPVPLADISDRQGISLSYLEQLFARLRKRGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD I++ V+ A +ES +C K +C C S+ + Sbjct: 61 PGGGYRLGRDADSISVGAVIDAVDESIDATKC--QGKGNCHNGEQCLTHSLWEGLSDRIA 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+ + Sbjct: 119 QFLDGITLAELMATKE 134 >gi|257093603|ref|YP_003167244.1| BadM/Rrf2 family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046127|gb|ACV35315.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 164 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ ++ P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRCSEGPVTLAGISERQKISLSYLEQLFGKLRRYGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RP Q+T+ D+++A +E +C +C C + F Sbjct: 61 PGGGYCLARPTSQMTVTDIIRAVDEPLDATQCGGRE--NCHDDERCMTHELWTTLNEKMF 118 Query: 120 DVLTQYSIECLVRNR 134 D L+ ++ LV + Sbjct: 119 DYLSSVTLNELVDQQ 133 >gi|163802461|ref|ZP_02196354.1| hypothetical protein 1103602000590_AND4_19427 [Vibrio sp. AND4] gi|159173762|gb|EDP58577.1| hypothetical protein AND4_19427 [Vibrio sp. AND4] Length = 168 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL A I I V+ A +ES +C K DC C ++ R + Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESIDATKC--QGKGDCQGGIRCLTHTLWRDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+ + ++ Sbjct: 119 DFLNNITLGELMTDNEVLE 137 >gi|218295733|ref|ZP_03496529.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus Y51MC23] gi|218243892|gb|EED10419.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus Y51MC23] Length = 148 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRAPEAVPLKEVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL RP +++T L+VV+A E S C + C VG C + R+ A Sbjct: 61 KGGYRLARPPEKVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWRRVDLAMRQ 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R ++ Sbjct: 120 VLGGTTLKDLIEERRLLE 137 >gi|254361062|ref|ZP_04977207.1| possible transcriptional regulator [Mannheimia haemolytica PHL213] gi|261493610|ref|ZP_05990130.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495448|ref|ZP_05991896.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092548|gb|EDN73603.1| possible transcriptional regulator [Mannheimia haemolytica PHL213] gi|261308953|gb|EEY10208.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310792|gb|EEY11975.1| putative transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 150 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L + GIV++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQLFAQLRRDGIVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + ++I++ ++ A E+ V +C S +C C S+ + + Sbjct: 61 PGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSG--NCRKDSQCLTHSLWERLEDQIE 118 Query: 120 DVLTQYSIECLVRNRSS 136 L S+ L + Sbjct: 119 QFLGTISVADLAAEHAD 135 >gi|89094369|ref|ZP_01167310.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92] gi|89081428|gb|EAR60659.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92] Length = 143 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY +RVL Y A ++ +S+IA+ IS L K++ L KAG + T RG+ Sbjct: 1 MQLSRFTDYTLRVLFYVATNDKRLVTLSEIAKCYDISVEHLRKVVHALSKAGHLATFRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L + +I I +V+ E + C + C L G C L SVL +A AF Sbjct: 61 NGGIKLAKHPSEINIGEVIAEAEGRQPLINC---GQQMCRLTGFCTLQSVLGEAQTAFMR 117 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL QY++ ++ + + + N Sbjct: 118 VLDQYTLADMLESTDMRESLIN 139 >gi|148263560|ref|YP_001230266.1| BadM/Rrf2 family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397060|gb|ABQ25693.1| transcriptional regulator, BadM/Rrf2 family [Geobacter uraniireducens Rf4] Length = 141 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y +R ++ +++ D P + +IA+ I +L ++ L GIV ++RG Sbjct: 1 MRLSTRAQYAVRAMVDLSLYATDKPVSLKEIAQREDIPLSYLEQLFFRLKNGGIVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + I + ++V EE C C V C ++ + Sbjct: 61 PGGGYILARNSALIKVGEIVVTVEEPLSPVACMDEGSTGCSRVSRCVTHNIWKDLGERIR 120 Query: 120 DVLTQYSIECLVRNRSS 136 L ++E L Sbjct: 121 GFLDAITLEDLTHEARE 137 >gi|319779386|ref|YP_004130299.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9] gi|317109410|gb|ADU92156.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9] Length = 178 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 9/142 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + + P +S I+ IS +L ++ L + +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRSHSGPVTLSAISSRQNISLSYLEQLFSKLRRHELVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC------PLVGSCGLTSVLRK 113 GG L R A IT+ D+V A +E C +K+ C G C + Sbjct: 61 PGGGYTLARNAKDITVADIVFAVDEPLDATGC--GNKLPCNNGRDGRDHGHCMTHDLWSS 118 Query: 114 ALNAFFDVLTQYSIECLVRNRS 135 D L S++ LV ++ Sbjct: 119 LNAHMVDYLDSVSLQDLVDHQR 140 >gi|303228671|ref|ZP_07315496.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-134-V-Col7a] gi|303231408|ref|ZP_07318141.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-049-V-Sch6] gi|302513916|gb|EFL55925.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-049-V-Sch6] gi|302516651|gb|EFL58568.1| putative HTH-type transcriptional regulator IscR [Veillonella atypica ACS-134-V-Col7a] Length = 139 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGTEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + + +++ A E+S + C CP+ C + + + F Sbjct: 61 KYGGYRLVKDPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 V+ + S++ ++ ++ ++ Sbjct: 121 HVMERVSLQDVMDHKFPVE 139 >gi|149202404|ref|ZP_01879377.1| Rrf2 family protein [Roseovarius sp. TM1035] gi|149144502|gb|EDM32533.1| Rrf2 family protein [Roseovarius sp. TM1035] Length = 148 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 72/136 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R+LM A D +++A +S L KI+Q L +AG+++T RG Sbjct: 1 MRLTSFTDFGLRMLMRMASAPDRAFSSAELAAEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +I + DV++ E + CF + +C L G C L + L+ A AF D Sbjct: 61 GGGAILARPPSEIRLGDVIRHLESGQALVVCFGADAGECSLDGRCRLKARLKAAERAFLD 120 Query: 121 VLTQYSIECLVRNRSS 136 L + ++ + ++ Sbjct: 121 DLDRSTLADIALDQRP 136 >gi|160932651|ref|ZP_02080041.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753] gi|156868610|gb|EDO61982.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753] Length = 145 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A + + +IAE ISE +L I++ LVK G+V +RG Sbjct: 1 MMVSTKGRYALRVMVELAARGLEEFVPLKEIAEHQEISEKYLEAIMKSLVKEGLVTGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL +P Q T+ ++K TE S C + CP C + ++ Sbjct: 61 KGGGYRLSKPPAQYTVGSILKVTEGSLAPVACLGQNAAPCPRAERCATYPMWKRLSQLID 120 Query: 120 DVLTQYSIECLV 131 D ++E L Sbjct: 121 DFFEGITLEQLA 132 >gi|167856166|ref|ZP_02478905.1| putative HTH-type transcriptional regulator [Haemophilus parasuis 29755] gi|219870330|ref|YP_002474705.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus parasuis SH0165] gi|167852724|gb|EDS23999.1| putative HTH-type transcriptional regulator [Haemophilus parasuis 29755] gi|219690534|gb|ACL31757.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus parasuis SH0165] Length = 148 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H D P + I++ IS +L ++ L + G+V +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKDMPVSLVDISDRQAISLSYLEQLFAQLRREGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + ++I + ++ A ES V++C +C C S+ + N Sbjct: 61 PGGGYQLAKTPEEINVSLIIAAVNESVDVSKC--KGNGNCSNNSRCLTHSLWERLENQIE 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV S Sbjct: 119 QYLHTITLAELVEENSD 135 >gi|68248982|ref|YP_248094.1| hypothetical protein NTHI0499 [Haemophilus influenzae 86-028NP] gi|145631834|ref|ZP_01787593.1| predicted transcriptional regulator [Haemophilus influenzae R3021] gi|145632626|ref|ZP_01788360.1| predicted transcriptional regulator [Haemophilus influenzae 3655] gi|145640331|ref|ZP_01795915.1| predicted transcriptional regulator [Haemophilus influenzae R3021] gi|229844533|ref|ZP_04464673.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1] gi|229846466|ref|ZP_04466574.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1] gi|68057181|gb|AAX87434.1| predicted transcriptional regulator [Haemophilus influenzae 86-028NP] gi|144982553|gb|EDJ90107.1| predicted transcriptional regulator [Haemophilus influenzae R3021] gi|144986821|gb|EDJ93373.1| predicted transcriptional regulator [Haemophilus influenzae 3655] gi|145274917|gb|EDK14779.1| predicted transcriptional regulator [Haemophilus influenzae 22.4-21] gi|229810559|gb|EEP46277.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1] gi|229812782|gb|EEP48471.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1] gi|309972462|gb|ADO95663.1| transcriptional regulator IscR [Haemophilus influenzae R2846] Length = 150 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P++QI++ ++ A E+ V +C +C C + Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + ++ LV R+ ++ Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138 >gi|302387262|ref|YP_003823084.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197890|gb|ADL05461.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 143 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +R+++ A H ND + I++ IS+ +L +I+ L ++ ++ T RG Sbjct: 1 MKISTRGRYSLRMMIDLAEHYNDEFIALKDISKRQNISKKYLEQIVPFLNRSNLLTTYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R QITI D++ ++E S C + C C + + Sbjct: 61 HMGGYKLARHPSQITIGDILLSSEGSLNPVSCMDNDPSICARQEDCLTLPIWQGLSEVIA 120 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ R Sbjct: 121 DYLNGITLQDILDRRPD 137 >gi|323141801|ref|ZP_08076668.1| putative HTH-type transcriptional regulator CymR [Phascolarctobacterium sp. YIT 12067] gi|322413724|gb|EFY04576.1| putative HTH-type transcriptional regulator CymR [Phascolarctobacterium sp. YIT 12067] Length = 145 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H D + IA IS+ +L +I+ L K+ ++ RG Sbjct: 1 MKISTKGRYALRMMLDLAEHQQDGFVALKDIAARQNISKKYLEQIVPILNKSNFLQANRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + T+ +++ TE + C + + C C + + Sbjct: 61 FQGGYRLVNAPREYTVGSILRLTEGNLTPVACLDFNPVGCERRNECITLPLWQGLNKVIA 120 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ N + Sbjct: 121 DYLDNITLQDILDNYKA 137 >gi|256822724|ref|YP_003146687.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796263|gb|ACV26919.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis DSM 16069] Length = 155 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A+H+ P +++++ IS +L ++ L KA +V++VRG Sbjct: 1 MKLSTKGRYAVTAMLDLALHSGNGPITLAEVSSRQDISLSYLEQLFSKLRKASLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RP+ QI+I +VV A E +C + K C C + + + + Sbjct: 61 PGGGYELKRPSSQISIAEVVLAVNEPISATKC--NGKGGCQDGDLCLSHQLWTELSDQIY 118 Query: 120 DVLTQYSIECLVRNR 134 L+ ++E +++ + Sbjct: 119 QFLSGITLEQVIQRQ 133 >gi|91792814|ref|YP_562465.1| iron-sulfur cluster assembly transcription factor IscR [Shewanella denitrificans OS217] gi|91714816|gb|ABE54742.1| transcriptional regulator, BadM/Rrf2 family [Shewanella denitrificans OS217] Length = 153 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSTTGPVPLADISERQGISLSYLEQLFAKLRKEGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A I+I VV A +ES V C K +C C S+ Sbjct: 61 PGGGYHLGLEAKDISISMVVHAVDESVDVTRC--QGKGNCQSGTRCLTHSLWGDLSKQIA 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L++ R Sbjct: 119 DFLDGISLAGLMQKRD 134 >gi|109897562|ref|YP_660817.1| BadM/Rrf2 family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|332307518|ref|YP_004435369.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109699843|gb|ABG39763.1| transcriptional regulator, BadM/Rrf2 family [Pseudoalteromonas atlantica T6c] gi|332174847|gb|AEE24101.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 161 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQRGPVSLADISERQEISLSYLEQLFSRLRREKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I I +V++A +ES C + DC C S+ + Sbjct: 61 PGGGYKLGRQPSDIPIGEVIRAVDESVDATRC--QGQSDCQGGERCLTHSLWQDLSERIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+ Sbjct: 119 LFLDGITLGELMAQHD 134 >gi|238921054|ref|YP_002934569.1| iron-sulfur cluster assembly transcription factor IscR, [Edwardsiella ictaluri 93-146] gi|259493874|sp|C5BEU6|ISCR_EDWI9 RecName: Full=HTH-type transcriptional regulator iscR gi|238870623|gb|ACR70334.1| iron-sulfur cluster assembly transcription factor IscR, putative [Edwardsiella ictaluri 93-146] Length = 165 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +I I V+ A +ES C K C C ++ R Sbjct: 61 PGGGYLLGKETSEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHTLWRDLSERIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L S+ LV N+ + Sbjct: 119 GFLNNISLAELVNNQEVM 136 >gi|149915740|ref|ZP_01904265.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. AzwK-3b] gi|149810322|gb|EDM70167.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. AzwK-3b] Length = 150 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 80/144 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IRVLM+C + D S+IA C SE L +++ L + + T RGR Sbjct: 1 MRITKRTNIAIRVLMFCGANIDRLVTKSEIAARCNTSESHLAQVINRLAQLDFLHTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP D+I I DV + E + +AECFA CPLV +C L + A AF+ Sbjct: 61 SGGIALARPMDEIIIGDVFRQLESNVPIAECFADVDNTCPLVTACRLRHAIADAAEAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 L + +++ LV + ++ IF G Sbjct: 121 HLDKITLDVLVCDNVALLDIFMPG 144 >gi|28868629|ref|NP_791248.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971530|ref|ZP_03399641.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1] gi|301386135|ref|ZP_07234553.1| rrf2 family protein [Pseudomonas syringae pv. tomato Max13] gi|302060165|ref|ZP_07251706.1| rrf2 family protein [Pseudomonas syringae pv. tomato K40] gi|302135108|ref|ZP_07261098.1| rrf2 family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851867|gb|AAO54943.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923722|gb|EEB57306.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1] gi|330872891|gb|EGH07040.1| rrf2 family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965903|gb|EGH66163.1| rrf2 family protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331019392|gb|EGH99448.1| rrf2 family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 163 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + VV A ES C DC +C + Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVTRRE 134 >gi|152995372|ref|YP_001340207.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836296|gb|ABR70272.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1] Length = 162 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P +S I+ IS +L ++ L K +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDQGPVSLSDISSRQGISLSYLEQLFSKLRKKSLVNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R +I + +V A ES C + DC +C + + Sbjct: 61 PGGGYRLSRLNSEIFVAQIVDAVNESVDATGC--KGRSDCQSGNTCLTHHLWCDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L Q S++ LVR R+ ++++ Sbjct: 119 DFLNQISLDQLVR-RNDVRQV 138 >gi|295104009|emb|CBL01553.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii SL3/3] Length = 157 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + T ++++A E S C S +CP+ C Sbjct: 61 SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 120 Query: 120 DVLTQYSIECLVRN 133 + ++E L Sbjct: 121 QYIDSVTLEQLASQ 134 >gi|254498832|ref|ZP_05111541.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351940|gb|EET10766.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 143 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y + I++I+ A IS L KI+ L + GIV+T+RG+ Sbjct: 1 MQLTQFTDYSLRALIYIGVRQ-KICTINEISIAYSISRNHLIKIIHRLSQIGIVKTIRGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + D+I + ++ E +F + CF +K C + +C L ++L +A AF Sbjct: 60 NGGIEMAISPDKINLKQLILKLEPNFDLVPCFNQNKEPCRIASACKLQTILYEAQKAFLT 119 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL ++++ ++ N++++ ++ Sbjct: 120 VLEKFTLADIMHNQAALHQLL 140 >gi|83954868|ref|ZP_00963546.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1] gi|83840594|gb|EAP79766.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1] Length = 156 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 72/137 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT T++ +R L A+ R+ + ++ + KI+ L +AG V T RGR Sbjct: 1 MKLTSYTNFALRSLQLAALKEPDLIRVDDVVRVHGLARPHIVKIVHELGRAGYVATQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA+ I I DVV+ TE + ECF + CPL+G C L+ L++A AF Sbjct: 61 NGGFRLARPAEDIVIGDVVRLTEGPLDLVECFNPERNTCPLIGICKLSRALQEATGAFMA 120 Query: 121 VLTQYSIECLVRNRSSI 137 VL ++ + NR + Sbjct: 121 VLDNLTLSDIASNRGDL 137 >gi|254515564|ref|ZP_05127624.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR5-3] gi|219675286|gb|EED31652.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR5-3] Length = 160 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P R++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQNLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A+ I++ +V+ A E C K DC +C + + Sbjct: 61 PGGGYRLKRGAEDISVAEVISAVNEDTDATRC--RGKGDCQEGDTCLTHHLWMDLSDRIR 118 Query: 120 DVLTQYSIECLVRNRS 135 D LT S+ LV R Sbjct: 119 DFLTDISLADLVARRE 134 >gi|88800857|ref|ZP_01116412.1| hypothetical protein MED297_17612 [Reinekea sp. MED297] gi|88776430|gb|EAR07650.1| hypothetical protein MED297_17612 [Reinekea sp. MED297] Length = 154 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 69/142 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+Y R+L+ + +S+IA A IS L K+ L++ +V+TVRGR Sbjct: 1 MKINSFTNYSFRILIMLGANPGRTIPLSEIASAYGISINHLKKVAARLIEQSLVDTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + + I + ++ + ++ EC + C + C L + +KAL F D Sbjct: 61 SGGLVLKKAPEDIRLGEIFRISQTDTAFVECMDASSEGCVISPVCRLQGIFQKALAQFID 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 + Y++ LV N+ I N Sbjct: 121 TMDGYTLADLVENKDDINVHLN 142 >gi|317049145|ref|YP_004116793.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b] gi|316950762|gb|ADU70237.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] Length = 165 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES +C K C C + R Sbjct: 61 PGGGYLLGKDAGAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L ++ LV N+ + Sbjct: 119 EFLNNITLAELVNNQEIL 136 >gi|256830950|ref|YP_003159678.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256580126|gb|ACU91262.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium baculatum DSM 4028] Length = 153 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 74/132 (56%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ Y R+L+ A+HN+ P+R++ I+E I+ F+ +I++PL AG+V + RG Sbjct: 1 MKLSAKSRYASRILLDLALHNEGVPHRVNDISERTGITVPFIEQIIKPLKHAGMVTSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + IT+ D+V+ E S ++ C ++ ++ C C + ++A +A Sbjct: 61 AAGGHQLGRSPENITLGDIVRIMEGSVELSACLSAPEL-CERTAVCPTRAAWQRATDAML 119 Query: 120 DVLTQYSIECLV 131 L ++ L Sbjct: 120 RELDTITLAGLA 131 >gi|261345349|ref|ZP_05972993.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rustigianii DSM 4541] gi|282566392|gb|EFB71927.1| iron-sulfur cluster assembly transcription factor IscR [Providencia rustigianii DSM 4541] Length = 165 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +DQI + +V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRGSDQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S++ LV+N+ + Sbjct: 120 SFLSSISLDELVKNQEVL 137 >gi|56965514|ref|YP_177247.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911759|dbj|BAD66286.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 153 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 2 HLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDY +R L+Y ++ + ++ IA IS L K++ L + G++ T+RG+ Sbjct: 4 QLTTYTDYALRALLYVGSLPDGERTQVKDIASVYNISLNHLQKVIHDLGRKGVLHTIRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L I I +V+ E + ECF +C + SC L L KA +AFF Sbjct: 64 HGGIALAHKPVDINIGKLVRELE-DVQLVECF-RDNNNCLISNSCKLKEALAKAQHAFFQ 121 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL QYS+ + N++ + +F Sbjct: 122 VLDQYSLADFLENKADLYALF 142 >gi|312796716|ref|YP_004029638.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454] gi|312168491|emb|CBW75494.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454] Length = 180 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 5 MRLTTKGRFAVTAMIDLALRQEKGPVTLAAISQRQQISLSYLEQLFGKLRRHEIVESVRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R AD++T+ D++ A +E +C K C G C + Sbjct: 65 PGGGYNLARRADEVTVADIIIAVDEPLDATQC--GGKGTCEGTKQPGGHCMTHELWSTLN 122 Query: 116 NAFFDVLTQYSIECLVRNRS 135 + L S++ LV + Sbjct: 123 QKMVEYLDSVSLQDLVDQQR 142 >gi|227872831|ref|ZP_03991143.1| possible transcription regulator [Oribacterium sinus F0268] gi|227841326|gb|EEJ51644.1| possible transcription regulator [Oribacterium sinus F0268] Length = 174 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + L+ A P I ++AE IS +L +I+ +VK G +++VR Sbjct: 28 MMISTKGRYALSTLIDIAEQEKKGNPVSIKEVAERQGISVKYLEQIIALMVKGGFLKSVR 87 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L + A I++ D++ A E + +C +C SC + ++ A Sbjct: 88 GAKGGYLLLKEAKDISVGDILDAAEGTLSPVDCVKEGS-NCERSASCPTFPLYKEIDEAI 146 Query: 119 FDVLTQYSIECLVR 132 + V+ +YS+E L++ Sbjct: 147 YAVVNRYSLEDLLQ 160 >gi|51102912|gb|AAT96061.1| rrf2 family protein [Pseudomonas viridiflava] Length = 163 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + VV A ES C DC +C + Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVTRRE 134 >gi|330957514|gb|EGH57774.1| rrf2 family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 163 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + VV A ES C DC +C + Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVTRRE 134 >gi|313112815|ref|ZP_07798462.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624885|gb|EFQ08193.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 152 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + T ++++A E S C S +CP+ C Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMWEQCFTLPFWTGLDEVIN 120 Query: 120 DVLTQYSIECL 130 + ++E L Sbjct: 121 QYIDSVTLEQL 131 >gi|221633611|ref|YP_002522837.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM 5159] gi|221156767|gb|ACM05894.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM 5159] Length = 146 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +YG+R ++ A ++ P +S IA+ + +L +++ PL +AG+V + RG Sbjct: 1 MKVSTRGEYGLRAMVSLARMYGRGPMPLSVIAQDSAVPLAYLEQLMLPLRRAGLVVSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117 GG L RP +Q+ + ++ + E +C + CP++ C V K ++ Sbjct: 61 AHGGYELARPPEQVKVGEIYRVMEGPIAPMDCVREDADEDICPMIDGCATRIVWLKLRDS 120 Query: 118 FFDVLTQYSIECLVRN 133 +VL ++ L+ + Sbjct: 121 IVEVLDSTTLADLISH 136 >gi|160893212|ref|ZP_02074000.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50] gi|156865295|gb|EDO58726.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50] Length = 145 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y I++++ A + N P +I IA IS+ +L +I+ L KA +V++VRG Sbjct: 1 MKISTKGRYAIKLMLDLATYYNGEPVKIKDIARRQHISDKYLEQIVAILNKASLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L + T+ +++ E S A+C ++ C C + K A Sbjct: 61 ARGGYMLYASPENYTVRQILETVEGSLAPADCVGANAAYCENRSMCVSVLIWEKLDQAIQ 120 Query: 120 DVLTQYSIECLVRNRSSI 137 DVL ++ LV ++++ Sbjct: 121 DVLEGITLADLVDWQNNL 138 >gi|319896708|ref|YP_004134901.1| transcriptional regulator [Haemophilus influenzae F3031] gi|317432210|emb|CBY80562.1| predicted transcriptional regulator [Haemophilus influenzae F3031] Length = 150 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ D P ++ I+E IS +L ++ L K G+V++VRG Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P++QI++ ++ A E+ V +C +C C + + Sbjct: 61 SGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + ++ LV R+ ++ Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138 >gi|66044484|ref|YP_234325.1| transcription factor IscR [Pseudomonas syringae pv. syringae B728a] gi|71736670|ref|YP_273566.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487211|ref|ZP_05641252.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626165|ref|ZP_06459119.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649071|ref|ZP_06480414.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aesculi str. 2250] gi|289677962|ref|ZP_06498852.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. syringae FF5] gi|298486011|ref|ZP_07004085.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185757|ref|ZP_07262430.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. syringae 642] gi|63255191|gb|AAY36287.1| Protein of unknown function UPF0074:Iron-sulphur cluster assembly transcription factor IscR [Pseudomonas syringae pv. syringae B728a] gi|71557223|gb|AAZ36434.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159488|gb|EFI00535.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322933|gb|EFW79023.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. glycinea str. B076] gi|320329944|gb|EFW85932.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. glycinea str. race 4] gi|330869589|gb|EGH04298.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874670|gb|EGH08819.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. glycinea str. race 4] gi|330894481|gb|EGH27142.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. mori str. 301020] gi|330895877|gb|EGH28162.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936997|gb|EGH41093.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. pisi str. 1704B] gi|330950800|gb|EGH51060.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae Cit 7] gi|330969082|gb|EGH69148.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975891|gb|EGH75957.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330985002|gb|EGH83105.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009174|gb|EGH89230.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 163 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + VV A ES C DC +C + Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVTRRE 134 >gi|262376138|ref|ZP_06069368.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter lwoffii SH145] gi|262308739|gb|EEY89872.1| iron-sulfur cluster assembly transcription factor IscR [Acinetobacter lwoffii SH145] Length = 157 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTRGRYAVTALLDLALQPSEKTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+L +++A E+ C HK +C C + ++ + Sbjct: 61 ANGGYHLARNADEITVLAIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118 Query: 120 DVLTQYSIECLVRN 133 D L + S+ LV Sbjct: 119 DYLEKISLADLVAR 132 >gi|229827945|ref|ZP_04454014.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC 49176] gi|229787880|gb|EEP23994.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC 49176] Length = 144 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H + + IA+ +S+ +L +I+ L AG++ T RG Sbjct: 1 MKISTKGRYALRLMVDLAEHKESGFIALKDIAKRQNVSKKYLEQIVPVLNGAGLLTTNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L + + T+ D+++ TE S C + C C V + Sbjct: 61 NRGGYKLSKEPSEYTVGDILRTTEGSVAPVSCLETEVNYCERKDCCQTLFVWKGLYKVVN 120 Query: 120 DVLTQYSIECLVRNRSS 136 + L +++ ++ S+ Sbjct: 121 EYLDSITVQDILDRSSA 137 >gi|238018454|ref|ZP_04598880.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748] gi|237864925|gb|EEP66215.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748] Length = 139 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + + +++ A E+S + C CP+ C + + + F Sbjct: 61 KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120 Query: 120 DVLTQYSIECLVRNR 134 V+ + S++ ++ ++ Sbjct: 121 HVMERVSLQDVMDHK 135 >gi|238927889|ref|ZP_04659649.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238884222|gb|EEQ47860.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 149 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+H + IA + ISE +L +++ PL +AG+VE+VRG Sbjct: 3 MKLSTKGRYSVTALYELALHYGKGVVPLHAIAASQGISEHYLEQLMVPLRRAGLVESVRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115 +GG L P Q+TI ++ A E + +C + C G+C + + Sbjct: 63 AQGGYTLALPPGQVTIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 122 Query: 116 NAFFDVLTQYSIECLVRN 133 + VL ++ LV+ Sbjct: 123 ESINSVLNNIALSDLVQR 140 >gi|77465342|ref|YP_354845.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126464803|ref|YP_001045916.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221369349|ref|YP_002520445.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] gi|77389760|gb|ABA80944.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126106614|gb|ABN79144.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|221162401|gb|ACM03372.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] Length = 145 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK +DY +RVL+Y A I + I + A IS+ L K++ L+ AG ++ RG Sbjct: 1 MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL RPA +I + +V++ATE F + ECF C + C L +L KA+++F Sbjct: 61 RTGGFRLARPASEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPILAKAVSSFM 119 Query: 120 DVLTQYSIECLV 131 D L +++I ++ Sbjct: 120 DTLDEFTIADVM 131 >gi|300312445|ref|YP_003776537.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075230|gb|ADJ64629.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 8/142 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P +S I+E IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-----PLVGSCGLTSVLRKA 114 GG L R A +++ D++ A +E +C K +C P C + Sbjct: 61 PGGGYNLARKAADVSVADIIIAVDEPLDATQC--GGKENCHSASHPGGARCMTHDLWSTL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + Sbjct: 119 NEKMVEYLDSVSLQDLVDQQKE 140 >gi|237800030|ref|ZP_04588491.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022885|gb|EGI02942.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 163 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + VV A ES C DC +C + Sbjct: 61 PGGGYQLSRDMKVIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVTRRE 134 >gi|160943772|ref|ZP_02091003.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii M21/2] gi|158444946|gb|EDP21949.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii M21/2] Length = 189 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG Sbjct: 33 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 92 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + T ++++A E S C S +CP+ C Sbjct: 93 SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 152 Query: 120 DVLTQYSIECLVRN 133 + ++E L Sbjct: 153 QYIDSVTLEQLASQ 166 >gi|15894952|ref|NP_348301.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024637|gb|AAK79641.1|AE007677_3 Predicted transcriptional regulator (HTH winged helix type) [Clostridium acetobutylicum ATCC 824] gi|325509089|gb|ADZ20725.1| transcriptional regulator (HTH winged helix type) [Clostridium acetobutylicum EA 2018] Length = 139 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG++ ++ AIH P I I+E ISE +L ++ PL K+G+++++RG Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGAEPVSIKSISERQKISEAYLEQLFVPLRKSGLIKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I I ++ E +++C S C C + K + Sbjct: 61 SQGGYVLSKDPKDIHISNIFDVLEGPIEISDCVESD--SCDNSDYCVTRLLWVKIKESID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +V +++ +V + +SIK Sbjct: 119 NVTKTITLKDMVDDYNSIK 137 >gi|125974348|ref|YP_001038258.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005573|ref|ZP_05430533.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281418895|ref|ZP_06249913.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|125714573|gb|ABN53065.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|255990481|gb|EEU00603.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|281407352|gb|EFB37612.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|316941506|gb|ADU75540.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 153 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++ AIH+ + + IAE C +SE ++ +I L +AGIVE++RG Sbjct: 1 MKISTKGRYGLEAIVDLAIHSSEGRVSLKSIAERCGMSEAYILQIFLILRRAGIVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKAL 115 +GG L R QIT+ +++ E C A K C +C S K + Sbjct: 61 AQGGYVLARDPSQITVGEILTVLEGPLAPVPCIAEKTKRSKSSCERYENCTARSFWEKIM 120 Query: 116 NAFFDVLTQYSIECLVR 132 N DV ++E LV+ Sbjct: 121 NTLNDVANSITVEDLVK 137 >gi|146308527|ref|YP_001188992.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576728|gb|ABP86260.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas mendocina ymp] Length = 165 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVARRE 134 >gi|88706198|ref|ZP_01103905.1| rrf2 family protein [Congregibacter litoralis KT71] gi|88699592|gb|EAQ96704.1| rrf2 family protein [Congregibacter litoralis KT71] Length = 160 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P R++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQDLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A+ I++ DV+ A E C K DC +C + + Sbjct: 61 PGGGYRLKRGAEDISVADVISAVNEDTDATRC--RGKGDCQDGDTCLTHHLWMDLSDRIK 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSDISLADLVARRE 134 >gi|307824416|ref|ZP_07654641.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] gi|307734400|gb|EFO05252.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] Length = 157 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A H+ P ++ IA IS +L ++ L +AG+V+ VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAFHSQIKPVTLTDIAARQTISLSYLEQLFARLRRAGMVKGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +LCR I I D++ A E +C + +C +C + Sbjct: 61 PGGGYKLCRKTSDINIADIIAAVNEPLDSTKC--GGEANCQKDQACLTHDLWMGLSEQIR 118 Query: 120 DVLTQYSIECLVRNRS 135 D L S+ L+ Sbjct: 119 DYLKGISLADLLEKNQ 134 >gi|78224182|ref|YP_385929.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195437|gb|ABB33204.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 154 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R + A ++ P+++ I+ IS +L +I Q L +AGI+++ RG Sbjct: 1 MKLSTKSRYGLRAIFDIAYNSGNLPSQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNA 117 +GG L + ++IT+ DV+ ATE + EC K++C G+C + +A + Sbjct: 61 PQGGYCLAKKPEEITVADVLLATERDMNLVECTNKRKKKVECGFDGTCVTQELWCEASSR 120 Query: 118 FFDVLTQYSIECLVRNRSSI 137 + + +++ L S+ Sbjct: 121 LVEYFSAITVKDLCDRGQSM 140 >gi|146279260|ref|YP_001169418.1| hypothetical protein Rsph17025_3229 [Rhodobacter sphaeroides ATCC 17025] gi|145557501|gb|ABP72113.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 144 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK +DY +RVL+Y A I + I + A IS+ L K++ L+ AG ++ RG Sbjct: 1 MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMSLIHAGFLQGTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL RPA++I + +V++ATE F + ECF C + C L + KA+ +F Sbjct: 61 RTGGFRLARPANEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPIFAKAVKSFM 119 Query: 120 DVLTQYSIECLV 131 D L Q++I ++ Sbjct: 120 DTLDQFTIADVM 131 >gi|153813655|ref|ZP_01966323.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174] gi|149830271|gb|EDM85364.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174] Length = 143 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y IRV++ A HN + IA+ ISE +L I+ L K V+ +RG Sbjct: 1 MKISTRGRYAIRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R + TI +++ TE S C H C SC + Sbjct: 61 KGGGYRLVRTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEGFYKLLN 120 Query: 120 DVLTQYSIECLVRNRSS 136 + ++E L+ + Sbjct: 121 EYFDGITLEDLLEQSTD 137 >gi|307543983|ref|YP_003896462.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halomonas elongata DSM 2581] gi|307216007|emb|CBV41277.1| transcriptional regulator, BadM/Rrf2 family [Halomonas elongata DSM 2581] Length = 183 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ IA+ IS +L ++ L + G+V++VRG Sbjct: 29 MRLTTKGRYAVTAMLDLAMHADEGPICLADIAKRQEISLSYLEQLFARLRRRGLVDSVRG 88 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I++ V+ A +ES C DC +C + + Sbjct: 89 PGGGYLLTLSPEAISVAQVIDAVDESVDATRC--GGMSDCQQGDTCLTHHLWNELSEQIH 146 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L ++ L R R + I Sbjct: 147 GFLDGVTLGQLAR-RDEFRAI 166 >gi|282849760|ref|ZP_06259144.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|294794427|ref|ZP_06759563.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] gi|282580697|gb|EFB86096.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|294454757|gb|EFG23130.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] Length = 139 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + + +++ A E+S + C CP+ C + + + F Sbjct: 61 KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120 Query: 120 DVLTQYSIECLVRNR 134 V+ S++ ++ ++ Sbjct: 121 HVMEHVSLQDVMDHK 135 >gi|329119509|ref|ZP_08248194.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC BAA-1200] gi|327464442|gb|EGF10742.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC BAA-1200] Length = 153 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL Y A++++ I+ IAE IS+ L K++ LVK G +++VRG+ Sbjct: 1 MYLTQQTDYALRVLAYAAVNSEELVNIATIAEVYGISKSHLMKVVTALVKGGFLDSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A+ I + DVV+ E + EC + C L C L SVL A AF + Sbjct: 61 GGGLRLRRQAELIRLGDVVRHME-PMKLVECMGAGN-QCLLTSCCLLASVLNDAGKAFLE 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 HLDKFTLADLINKPT 133 >gi|294101175|ref|YP_003553033.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] gi|293616155|gb|ADE56309.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] Length = 138 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +T YG+R L+ D P I+ IA ISE +L ++ L + G++E+VR Sbjct: 1 MKLSTKTRYGLRALLELVRQYDGRTPLSITDIASKENISERYLEQLFLKLRRDGLIESVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R +IT+ +VV+ E + +A+C +C +C + + ++ Sbjct: 61 GPQGGYLLSRAPMEITVAEVVEVLEGNIQIADCL--EGPECMRESACPARKLWLRLRDSI 118 Query: 119 FDVLTQYSIECLVRNRS 135 +VL +++ L+ + Sbjct: 119 DNVLVSTTLKDLIEDHD 135 >gi|239994262|ref|ZP_04714786.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas macleodii ATCC 27126] Length = 161 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I I +V++A +ES C + DC C S+ + + Sbjct: 61 PGGGYLLGREASKIAIGEVIRAVDESIDATRC--QGQADCQGGDRCLTHSLWQDLSDRIA 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+ R Sbjct: 119 AFLNSITLGELMAKRD 134 >gi|330991657|ref|ZP_08315608.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329761676|gb|EGG78169.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 153 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 TDY +R L+Y +H D I +IA+A ISE L K++ L + G+++ RGR GG+ Sbjct: 2 HTDYALRTLLYMGLHADRRVSIHEIADAYDISENHLVKVIHRLSRLGLIDARRGRGGGLV 61 Query: 66 LCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 L + I I DVV+ TE+ + C C L C L L +AL+AF VL Sbjct: 62 LAHAPEDIRIGDVVRKTEDDMRLVSCEPANPEGAGCILSDMCKLRGALAQALDAFMKVLD 121 Query: 124 QYSIECLVRNRS 135 + ++ L+ + Sbjct: 122 ETTLADLLPDHD 133 >gi|320450975|ref|YP_004203071.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus SA-01] gi|320151144|gb|ADW22522.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus SA-01] Length = 154 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + ++AEA IS+ +L +I L ++G + +VRG Sbjct: 7 MWVSTKAQYGLRALVEIGLKAPEAVPLKEVAEAQGISQHYLEQIAAQLRRSGFIRSVRGA 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP +++T L+VV+A E S C + C VG C + ++ A Sbjct: 67 RGGYRLARPPERVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWKRVDLAMRQ 125 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R I+ Sbjct: 126 VLGSTTLKDLIEERKLIE 143 >gi|146283373|ref|YP_001173526.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas stutzeri A1501] gi|145571578|gb|ABP80684.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas stutzeri A1501] Length = 183 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 21 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES C C +C + Sbjct: 81 PGGGYQLSRDMAGIQVAQVIDAVNESVDATRCQGLGG--CHSGDTCLTHHLWCDLSQQIH 138 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L+ S+ LV NR ++++ Sbjct: 139 EFLSGISLADLV-NRQDVQQV 158 >gi|254671066|emb|CBA07956.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 145 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ G Sbjct: 1 MTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGKGG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF L Sbjct: 61 GLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFTYL 118 Query: 123 TQYSIECLVRNRS 135 ++++ L+ + Sbjct: 119 DGFTLQDLLNKPT 131 >gi|169350929|ref|ZP_02867867.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552] gi|169291991|gb|EDS74124.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552] Length = 148 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ AIH+D + IA+ ++ +L +I+ L KAG ++++RG Sbjct: 1 MKISTKGRYALRIMLDIAIHDDGKYIPLKDIAKRQNLTVKYLEQIISLLNKAGYLQSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + D+ + D+++ TE C C C R Sbjct: 61 NTGGYRLAKNLDEYVVGDILRVTEGDLAPVACLKKCGDFCQREDICNTVLFWRGLDRVIN 120 Query: 120 DVLTQYSIECLV---RNRSSIKKI 140 + + Y+++ L+ +++ + KK+ Sbjct: 121 EYVDSYTLKDLLEQSQDKDNNKKL 144 >gi|239908355|ref|YP_002955096.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239798221|dbj|BAH77210.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 155 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A + R IA I + FL IL L + G V++ RG Sbjct: 7 MWVTQKCQYALRALFELAKRQGEGAVRSVDIAANQAIPKRFLEVILHQLRQGGFVDSQRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L RP IT+ D+++ + +C DC L GSC + +A A Sbjct: 67 KEGGFFLSRPPANITVGDIIRFIDGPMTPVDCQLDRPHFDCALKGSCVFLGLWDEAREAL 126 Query: 119 FDVLTQYSIECLVRNRSSI 137 V +++ LV S++ Sbjct: 127 ERVYDTKTLQELVDKESAM 145 >gi|85059748|ref|YP_455450.1| DNA-binding transcriptional regulator IscR [Sodalis glossinidius str. 'morsitans'] gi|119371153|sp|Q2NS30|ISCR_SODGM RecName: Full=HTH-type transcriptional regulator iscR gi|84780268|dbj|BAE75045.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 165 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P +++I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSGKGPVPLAEISERQGISLSYLEQLFSRLRKHELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +DQI + V+ A +ES C K C C + R Sbjct: 61 PGGGYLLGRDSDQIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHVLWRDLSVRIS 118 Query: 120 DVLTQYSIECLVRNRSSI 137 + L ++ LV N + Sbjct: 119 EFLNNITLAELVSNEEIL 136 >gi|295102090|emb|CBK99635.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii L2-6] Length = 143 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H ++ + ++A ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLAEHRSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ +++ TE S C CP + C ++ + + Sbjct: 61 KGGGYRLTREPDQYTVGEILTLTEGSLAPVSCLVQGAAPCPRMSGCRTYNMWKGLDDLIE 120 Query: 120 DVLTQYSIECLVRNRSS 136 D + ++ L + Sbjct: 121 DYFGKITLADLAAPDEA 137 >gi|226328026|ref|ZP_03803544.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198] gi|225203730|gb|EEG86084.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198] Length = 164 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A QI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGRDAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S+E LV N + Sbjct: 120 SFLSSISLEELVNNEEVM 137 >gi|254450707|ref|ZP_05064144.1| rhizobial iron transcriptional regulator protein [Octadecabacter antarcticus 238] gi|198265113|gb|EDY89383.1| rhizobial iron transcriptional regulator protein [Octadecabacter antarcticus 238] Length = 143 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL K +DY +R+L+ ++ S IA++ +S+ + K+ LV+ G V + RGR Sbjct: 1 MHLDKFSDYAVRILIALSVSKAGRVPASSIAQSYGLSQHHIAKVATELVRGGFVTSDRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L RPA I+I V+++ VAECF S +C ++ +CGL + L +A +AFF Sbjct: 61 GGGLQLARPATDISIGAVLRSIMADDPVAECFGS-APNCAILPACGLRTPLTQAKDAFFS 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL Y+++ + + +S++ + +A Sbjct: 120 VLDGYTLDDVTQRKSALADLLSA 142 >gi|33152205|ref|NP_873558.1| hypothetical protein HD1080 [Haemophilus ducreyi 35000HP] gi|33148427|gb|AAP95947.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 150 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV +VRG Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + +I++ V+ A ES V +C +C C + + + Sbjct: 61 PGGGYQLGKSPAEISVGMVISAVSESLDVTKC--KGNGNCSKNSQCLTHHLWERLEDQIG 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ L + Sbjct: 119 VFLNTITLAELAEEHAG 135 >gi|218133327|ref|ZP_03462131.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC 43243] gi|217992200|gb|EEC58204.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC 43243] Length = 147 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV+ A H + +I+ IS +L I+ L K +V + G Sbjct: 1 MMISTKGRYALRVMTDLAQHGTGDFIPLKEISARQGISLKYLESIMTILSKGHMVRSASG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L + ++ + D+++ TE C A C L C + +A Sbjct: 61 KGGGYCLIKSPEEYRVGDILRLTEGDLAPVACLAPDTKKCDLTNECYTLPFWKGLGDAIN 120 Query: 120 DVLTQYSIECLV 131 + L +++ LV Sbjct: 121 EYLDGHTLADLV 132 >gi|298243979|ref|ZP_06967786.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297557033|gb|EFH90897.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 145 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + DYG+R ++ A + P S IA I E +L +IL L K G+V++VRG Sbjct: 1 MKLTMKGDYGLRAMLDMAAYYGQGPIESSDIASRQYIPEQYLDQILMVLRKEGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + QIT+ V++A E EC + C L C L V +K A Sbjct: 61 PKGGHMLAKAPGQITMAQVMQALEGYVPPMECLPNPDF-CKLSPGCALREVWQKIDAATQ 119 Query: 120 DVLTQYSIECLVRNRS 135 ++L +IE L + Sbjct: 120 EILNSTTIEELAQRHR 135 >gi|59712922|ref|YP_205698.1| transcriptional repressor NsrR [Vibrio fischeri ES114] gi|197336033|ref|YP_002157111.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11] gi|75353317|sp|Q5E2D6|NSRR_VIBF1 RecName: Full=HTH-type transcriptional repressor nsrR gi|226737681|sp|B5FBQ6|NSRR_VIBFM RecName: Full=HTH-type transcriptional repressor nsrR gi|59481023|gb|AAW86810.1| nitrite-responsive HTH-type transcriptional repressor NsrR [Vibrio fischeri ES114] gi|197317523|gb|ACH66970.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11] Length = 141 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y ++ I+ + E +S + KI+ L + G V+T+RG Sbjct: 1 MQLTNFTDFGLRALIYLGSLPEGELTSITVVTETFDVSRNHMVKIINKLGQEGYVKTIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PADQI I DV++A E V C C + +C L L KA AF Sbjct: 61 KNGGICLGKPADQIIIGDVIRAIE-PLQVVNCAPEF---CHITPACRLKGALAKAKQAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D L +++I+ ++ + S + + Sbjct: 117 DELDKHTIQDMLTDNSELLILL 138 >gi|294679131|ref|YP_003579741.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477947|gb|ADE87334.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus SB 1003] Length = 166 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+L+Y A + I ++AE IS + K++ L + G + + +GR Sbjct: 1 MRLTTFTDYALRLLIYTAGKPESRVTIDEVAEWFAISRAHVKKVVLTLSRGGFLLSSKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +I + +V+ ATE F + EC+ + +C + C L +V +AL AF Sbjct: 61 NGGFTLARPPGEINLSEVILATEPDFGLFECYLTGN-ECRISRPCRLPNVANEALAAFLA 119 Query: 121 VLTQYSIEC 129 VL +Y++ Sbjct: 120 VLGKYTLAD 128 >gi|209696175|ref|YP_002264105.1| transcriptional repressor NsrR [Aliivibrio salmonicida LFI1238] gi|226736212|sp|B6EMP9|NSRR_ALISL RecName: Full=HTH-type transcriptional repressor nsrR gi|208010128|emb|CAQ80453.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 141 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R L+Y A + I+ + E +S + KI+ L + G ++TVRG Sbjct: 1 MQLTNFTDFGLRALIYLASLPKGELTSITVVTETFDVSRNHMVKIINKLGQEGFIKTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L RPADQI I +V+++ E F + C C + +C L + L KA AF Sbjct: 61 KNGGICLGRPADQIIIGEVIRSIE-PFNIVNCAPEF---CHITPACRLKTALAKAKQAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D L Q++I+ ++ + + + Sbjct: 117 DELDQHTIQDMLTENNELLILL 138 >gi|307729210|ref|YP_003906434.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526617|ref|YP_004228770.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1001] gi|307583745|gb|ADN57143.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1003] gi|323383619|gb|ADX55710.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1001] Length = 176 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R + +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRPEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|227356227|ref|ZP_03840616.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163691|gb|EEI48607.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 164 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A QI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGREAGQIFVAQVISAVDESIDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S+E LV N + Sbjct: 120 SFLSSISLEELVNNEEVM 137 >gi|312880924|ref|ZP_07740724.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] gi|310784215|gb|EFQ24613.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] Length = 164 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A + P RI +AEA I FL IL L G VE+ RG Sbjct: 1 MAITQKCQYALRALFELACREGEGPVRIGTVAEAQNIPPRFLEGILNTLKAGGFVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG RL RPA I++ DV++ + S +C S + C L G C + +A A Sbjct: 61 KEGGYRLLRPARDISVGDVIRYLQGSLSQVDCDPGSSREPCGLYGDCVFRPLWERAQKAL 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V +I+ V ++ ++ Sbjct: 121 ESVYDSTTIQDFVDRQAERER 141 >gi|254503973|ref|ZP_05116124.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] gi|222440044|gb|EEE46723.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] Length = 140 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 61/128 (47%), Positives = 88/128 (68%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA++ D P+R++ IA + +SE LFKI++ LV A ++ T+RGR GGV L RPA+ I+ Sbjct: 1 MYCAVNPDKPSRVADIAASFEMSETHLFKIMKVLVDANLIRTIRGRNGGVMLARPAEAIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF +VL SI L +R Sbjct: 61 VGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFMEVLDAKSIADLSEDR 120 Query: 135 SSIKKIFN 142 ++ + N Sbjct: 121 FGMRTLLN 128 >gi|295108297|emb|CBL22250.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum A2-162] Length = 144 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ +H + I IA IS+ +L +++ L KAG+VE+ RG Sbjct: 1 MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG RL RPA +I++ DV++ E S A+C + C C V ++ ++ Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQCSGMEDESTCENHDICVTKYVWKRINDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + ++ L+ +K Sbjct: 121 TQAVDTMMLDQLIEESRKKQK 141 >gi|110678994|ref|YP_682001.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109455110|gb|ABG31315.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 147 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LM A+ S+IA +SE L K+ LV+ G V + RGR Sbjct: 1 MQLDKFTDYALRILMTLAVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R ++I + VV+ V ECF + K C ++ SCGL L +A AFF Sbjct: 61 NGGLTLARAPERILVGAVVRTMTRKAHVVECFGTDK-SCLILPSCGLRQPLAEAQEAFFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L Y++ + R+R + + N Sbjct: 120 TLDHYTLADVTRSRHGLGALLN 141 >gi|77919328|ref|YP_357143.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545411|gb|ABA88973.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 155 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L A + P +I I+ IS +L +I Q KAGI+++ +G Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGNQPAQIKDISRRQDISPRYLEQIFQSFKKAGILKSKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 +GG L R DQIT+ +V+A E + C K C + G C +V +A Sbjct: 61 PQGGYFLTRKPDQITVRQIVEAAEGDTLLVACACETPKGKGCCTMNGQCVTQTVWFEATE 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 L +++ L + Sbjct: 121 HLNTFLDSLTLQTLCERGQDM 141 >gi|284006761|emb|CBA72019.1| iron-sulfur cluster transcriptional regulator [Arsenophonus nasoniae] Length = 164 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKTGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I I V+ A +ES C + C C ++ R + Sbjct: 61 PGGGYLLGRDAKTIFIAQVISAVDESVDATRCHGRREG-CQGGERCLTHALWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRS 135 L+ S+E LV N+ Sbjct: 120 SFLSNISLEELVNNQE 135 >gi|220935228|ref|YP_002514127.1| iron-sulphur cluster assembly transcription factor IscR [Thioalkalivibrio sp. HL-EbGR7] gi|219996538|gb|ACL73140.1| iron-sulphur cluster assembly transcription factor IscR [Thioalkalivibrio sp. HL-EbGR7] Length = 162 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIHN+ P ++ I+ IS +L ++ L K G+V + RG Sbjct: 1 MRLTTKGRYAVTAMLDLAIHNEQGPISLADISHRQGISLSYLEQLFARLRKQGLVVSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPAD+ I DV+ A +E C DC C + + Sbjct: 61 PGGGYSLSRPADKTAIADVIAAVDEKVDTTRC--GGAADCQNNQRCLTHDLWSDLSDQIR 118 Query: 120 DVLTQYSIECLVRNR 134 LT ++ ++ Sbjct: 119 QFLTNITLADVMARN 133 >gi|325282545|ref|YP_004255086.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] gi|324314354|gb|ADY25469.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] Length = 163 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M ++ + YG+R L+ + +AE +S+ +L +I L +AG ++ Sbjct: 1 MWVSTKAQYGLRALIEIGRGGGTPGEGRAVPLKDVAERQDLSQHYLEQIASNLRRAGFIK 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 +VRG GG RL RPADQI+ DVV A E S EC + + C CG + ++ Sbjct: 61 SVRGAYGGYRLARPADQISAYDVVTALEGSIAPVECVEENHV-CDGKNVCGTLDLWQRVD 119 Query: 116 NAFFDVLTQYSIECLVRN 133 A DVL ++ L+ + Sbjct: 120 QALRDVLGSTTLADLIED 137 >gi|239906274|ref|YP_002953014.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239796139|dbj|BAH75128.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 145 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG+R+L+ A+H D P RI IA+ IS +L ++++ L KAG + + RG Sbjct: 1 MQLTTRSRYGLRMLLDIALHGDEGPVRIQDIAKRRGISVKYLEQLIRALKKAGFINSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L PA+ I + DVV+A E + EC + ++ C + C + +A + F Sbjct: 61 PKGGHVLATPAEAIRVGDVVRALESRPELTECVGNPEV-CMISTDCVTRQIWARATESIF 119 Query: 120 DVLTQYSIECLV 131 L + L+ Sbjct: 120 RELDAIHLSDLL 131 >gi|83312129|ref|YP_422393.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946970|dbj|BAE51834.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 157 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A H++ P ++ IAE IS +L ++ L K G+V++VRG Sbjct: 1 MKLSTKGRYAVMAMVDLASHSEGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R Q I D++ A +E C C G C + + N Sbjct: 61 PGGGYLLSRIPQQTRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCLTHDLWEELGNQI 120 Query: 119 FDVLTQYSIECLVRNR 134 + L+ S+ + R Sbjct: 121 YLYLSSVSLADVCERR 136 >gi|296446526|ref|ZP_06888469.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296256022|gb|EFH03106.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 144 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 67/129 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R L+ A D + IA+ +S + K+LQ L +G VE +RG Sbjct: 1 MKLTTFTDFGLRALILLASRKDEVLSAAAIADYFSVSRHHMAKVLQELAASGYVEGIRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GGVRL + I + DVV++ ++ + +CF DC L+ C L +L A F Sbjct: 61 QGGVRLAKDPRDIRVGDVVRSLDKEQALVDCFRDGWNDCALLPRCRLKGMLANAQQGFLR 120 Query: 121 VLTQYSIEC 129 L +++I Sbjct: 121 ELDRFTISD 129 >gi|291551296|emb|CBL27558.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus torques L2-14] Length = 142 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 1/130 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ + D + +IA ISE +L IL+ LV G + +RG Sbjct: 1 MIISTRGRYALRVMIDLSQQDPDSYTPLKEIAARQEISEKYLENILKSLVTQGFILGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + T+ ++ ATE S C H +C G C + K N Sbjct: 61 KGGGYRLTKSPGEYTLASILHATEGSLAAVACLEDHAPECARAGQCPTRPIWEKLDNLIE 120 Query: 120 DVLTQYSIEC 129 D L ++ Sbjct: 121 DYLGSITLAD 130 >gi|332526731|ref|ZP_08402833.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111134|gb|EGJ11166.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 177 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRSHSGPVALAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD+IT+ D++ A +E C G C + N Sbjct: 61 PGGGYSLGRGADEITVADIIVAVDEPIDATGCGGKENCHGDDGGRCMTHDLWASLNNKMI 120 Query: 120 DVLTQYSIECLVRNR 134 + L S++ LV + Sbjct: 121 EYLDSISLKKLVDEQ 135 >gi|317154436|ref|YP_004122484.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis Aspo-2] gi|316944687|gb|ADU63738.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis Aspo-2] Length = 148 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+ + A H P RI IAE +S +L K+++ L G V + RG Sbjct: 1 MRLTTRSRYGTRMALDIAQHCGPGPVRIQDIAERQGVSTKYLEKLIRRLKDGGYVVSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L RPA +I I ++V+ E + EC K DC C + + +A A + Sbjct: 61 PRGGHTLARPASEILIGELVRVLEGDDSLVECRTGKK-DCQRRSVCLTSRLWVEAAEAMY 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L +++ ++ + K Sbjct: 120 QRLNSFTLADMLADAEQCSK 139 >gi|225165991|ref|ZP_03727744.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium TAV2] gi|224799763|gb|EEG18239.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium TAV2] Length = 200 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+K+ +Y +R L+ I + +++++A+ I FL +I+Q L +G+V + Sbjct: 1 MKLSKKGEYALRALIDLGIAAEVDRDLVQVAELADKELIPIKFLEQIMQELKTSGLVISQ 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKA 114 RG+ GG RL RPA +I+I V++ + C + K CP CGL ++ Sbjct: 61 RGKFGGYRLSRPASEISIGSVIRFIDGPLAPIGCVSQTAYEKCSCPDETHCGLRMLMLDV 120 Query: 115 LNAFFDVLTQYSIECLVR 132 NA +L +YS+ +V Sbjct: 121 RNAIAGILDRYSLADVVD 138 >gi|330504691|ref|YP_004381560.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918977|gb|AEB59808.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 165 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVVRRE 134 >gi|197285716|ref|YP_002151588.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis HI4320] gi|194683203|emb|CAR43856.1| putative iron-sulfur cluster transcriptional regulator [Proteus mirabilis HI4320] Length = 164 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L K +V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A QI + V+ A +ES C +K C C ++ R + Sbjct: 61 PGGGYLLGREAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L+ S+E LV N + Sbjct: 120 SFLSSISLEELVNNEEVM 137 >gi|307292739|ref|ZP_07572585.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] gi|306880805|gb|EFN12021.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] Length = 150 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +RVL++ + I +IA+A +S L K++ L + G+++T RGR Sbjct: 1 MQLTRHTDYALRVLIHLTVAPSGRATIPEIADAYSLSRNHLMKVVHHLGQGGLLDTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP + I+I +VV+ +E +A+C C L +CGL+++L+ A AF Sbjct: 61 GGGFTLARPPEAISIGEVVRHSEPDMNMADC-----GSCALRTACGLSAILKAATAAFLA 115 Query: 121 VLTQYSIECLVRNR 134 VL ++S+ R++ Sbjct: 116 VLDRHSLADAARDK 129 >gi|110347078|ref|YP_665896.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283189|gb|ABG61249.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp. BNC1] Length = 153 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+LMY A D I + A A +S+ L K+ L + G ++ VRGR Sbjct: 1 MRLTSFSDYALRMLMYAATAGDRLITIEEAARAFSVSKTHLNKVANTLTRGGYLKAVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R + I I DV++ TE F + ECFA+ C L SC L+ +L +A+ +F + Sbjct: 61 SGGLMLDRRPETIRIGDVIRMTEPDFALVECFATGN-QCILTNSCKLSGMLGEAMASFHE 119 Query: 121 VLTQYSIECL 130 L +Y++ + Sbjct: 120 TLDRYTLADI 129 >gi|313679818|ref|YP_004057557.1| BadM/Rrf2 family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152533|gb|ADR36384.1| transcriptional regulator, BadM/Rrf2 family [Oceanithermus profundus DSM 14977] Length = 147 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + P + ++AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRGPDPVPLKEVAEAQGISQHYLEQIAAALRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP ++I L+VV+ E S C C G C + R+ A + Sbjct: 61 RGGYRLARPPEEINALEVVETMEGSLSPVGCIEDPG-SCEHEGQCSTELLWRRVDLAIRE 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R I+ Sbjct: 120 VLGSTNLQHLIDERRLIE 137 >gi|56962129|ref|YP_173852.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|81367334|sp|Q5WL64|NSRR_BACSK RecName: Full=HTH-type transcriptional regulator nsrR gi|56908364|dbj|BAD62891.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 149 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R+L+Y A+ + + + Q+A+ IS L K+ L K G++ET++G Sbjct: 1 MQLTSYTDYSLRLLLYLALQPKHKLSSVKQVADIYRISYNHLTKVTHELGKLGLIETIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I I +VVK TE++ + ECF C L +C L VL +AL A+ Sbjct: 61 RNGGIRLAKEPEEINIGEVVKQTEDNLELVECFNRETNTCILNPACRLKGVLHEALAAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL QY+++ LV N ++ + Sbjct: 121 QVLEQYTVKDLVLNEDDLRALLQ 143 >gi|295695737|ref|YP_003588975.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] gi|295411339|gb|ADG05831.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] Length = 136 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 12/133 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YGI +++ AI+ D P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKLSTRGRYGITLMVDLAINSGDQPVSLKSIAERQNLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +PA +IT D+V+ E V E GL + + +A Sbjct: 61 AYGGYVLAKPAQEITAGDIVRVLEGPITVVE-----------DEPTGLRRLWDEVRDAIN 109 Query: 120 DVLTQYSIECLVR 132 VL + ++ L Sbjct: 110 AVLDRTTLADLAE 122 >gi|207725261|ref|YP_002255657.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] gi|206590495|emb|CAQ37457.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2] Length = 193 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116 GG L R AD +T+ D++ A +E +C K +C G C + Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQ 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 119 KMVEYLDSVSLQDLVDQQRERQP 141 >gi|119469041|ref|ZP_01612025.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Alteromonadales bacterium TW-7] gi|119447293|gb|EAW28561.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Alteromonadales bacterium TW-7] Length = 163 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I++ D++ A +ES C + C C ++ Sbjct: 61 PGGGYLLGREAGVISVGDIITAVDESVDATRCQGA-NTGCQSGMRCLTHNLWSDLSARIE 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L ++ LV +S +K+I Sbjct: 120 EFLNSITLAELVE-KSDVKEI 139 >gi|315125526|ref|YP_004067529.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913] gi|315014039|gb|ADT67377.1| transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913] Length = 163 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHANIGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD I++ DV+ A +ES C C C ++ Sbjct: 61 PGGGYLLGREADVISVGDVINAVDESVDATRC-QRSNTGCQSGMRCLTHTLWSDLSARIE 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L ++ LV +S +K + Sbjct: 120 EFLNNITLAELVE-KSDVKAV 139 >gi|238916580|ref|YP_002930097.1| cysteine desulfurase [Eubacterium eligens ATCC 27750] gi|238871940|gb|ACR71650.1| cysteine desulfurase [Eubacterium eligens ATCC 27750] Length = 143 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A HN + IA ISE +L I+ L K + ++RG Sbjct: 1 MKISTKGRYALRVMIDLAEHNTGEYIPLMDIARRQDISEKYLEAIVATLSKNDFLISLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L R + ++L ++ TE S C CP V C + Sbjct: 61 KGGGYKLARNPEDYSVLSILLVTEGSLAPVACLEKKPNRCPKVAECKTLQMWENFEKLVN 120 Query: 120 DVLTQYSIECLVRNRSSI 137 D + +I LV + I Sbjct: 121 DYFSNITIADLVNSNVGI 138 >gi|149927875|ref|ZP_01916126.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105] gi|149823497|gb|EDM82728.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105] Length = 163 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALQQDTGPVSLAGISQRQNISLSYLEQLFSKLRRHELVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + R ++++ DV+ A +E +C K +C G C + Sbjct: 61 PGGGYHIARALKEVSVADVILAVDEPLDATQC--GGKENCTDEGQCMTHDLWSSLNTKML 118 Query: 120 DVLTQYSIECLVRNRSS 136 + L +++CLV Sbjct: 119 EYLGSVTLQCLVEKHKQ 135 >gi|294670388|ref|ZP_06735270.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307852|gb|EFE49095.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 149 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT++TDY +RVL Y A +++ I+ IAE IS L K+ LVK G +++VRG+ Sbjct: 1 MYLTQQTDYALRVLTYAAANSEGLVNIATIAEVYGISRSHLMKVATALVKGGFLDSVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R ++I I DVV+ E + EC + C L C L+++L +A AF Sbjct: 61 GGGLRLSRSEEEIVIGDVVRHME-PMKLVECMGADN-RCLLTSCCRLSNILNEAGQAFLA 118 Query: 121 VLTQYSIECLVRNRS 135 L ++++ L+ + Sbjct: 119 HLDKFTLSDLINQPT 133 >gi|332283993|ref|YP_004415904.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7] gi|330427946|gb|AEC19280.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7] Length = 171 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 5/147 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ IA+ IS +L ++ L + +V+++RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQHSGPVTLAAIAQRQNISLSYLEQLFGKLRRHKLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALN 116 GG L R A IT+ D++ A +E C + GS C + Sbjct: 61 PGGGYSLARLARNITVADIIFAVDEPLDATSCGGKENCNVGRNGSTGKCMTHELWSNLNR 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143 D L S++ LV ++ ++++ A Sbjct: 121 KMVDYLDSVSLQDLV-DQQRMRQLHEA 146 >gi|148546115|ref|YP_001266217.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida F1] gi|148510173|gb|ABQ77033.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida F1] Length = 182 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 20 MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + I + V+ A ES C DC +C + Sbjct: 80 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 137 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV+ R Sbjct: 138 EFLSGISLADLVKRRD 153 >gi|261367832|ref|ZP_05980715.1| iron-sulfur cluster assembly transcription factor IscR [Subdoligranulum variabile DSM 15176] gi|282570636|gb|EFB76171.1| iron-sulfur cluster assembly transcription factor IscR [Subdoligranulum variabile DSM 15176] Length = 138 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R Y +R+++ A H D + +I++ IS +L +I+ PL KAG+V +VRG Sbjct: 1 MKFSTRDRYALRLMVELANHGDGLVPLKEISDTQQISLKYLEQIITPLAKAGLVTSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL RP ++IT ++++A E C + ++CP C + Sbjct: 61 QGGYRLARPEEEITAGEILRAVEGELTAIPCLGA-NMECPRRDQCQTIGFWCGLNDLINQ 119 Query: 121 VLTQYSIECL 130 + ++ L Sbjct: 120 YVDGVTLAAL 129 >gi|134095421|ref|YP_001100496.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Herminiimonas arsenicoxydans] gi|133739324|emb|CAL62374.1| Iron-sulfur cluster assembly transcription factor IscR [Herminiimonas arsenicoxydans] Length = 157 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116 GG L R A+ +T+ D++ A +E +C P G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120 Query: 117 AFFDVLTQYSIECLVRNRSS 136 D L S++ LV + Sbjct: 121 KMVDYLDSVSLKDLVDQQKQ 140 >gi|319943706|ref|ZP_08017987.1| iron-sulfur cluster assembly transcription regulator IscR [Lautropia mirabilis ATCC 51599] gi|319742939|gb|EFV95345.1| iron-sulfur cluster assembly transcription regulator IscR [Lautropia mirabilis ATCC 51599] Length = 172 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALREHNGPVTLAGISQRQKISLSYLEQLFGKLRRHQLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RP+ I + ++ A +E +C K DC G C + Sbjct: 61 PGGGYSLARPSQDINVSSIIFAVDEPLDATQC--GGKQDCFEDGPCMTHELWTSLNKRMI 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L S++ LV + ++ Sbjct: 119 DYLDSVSLQDLVEQQRMREQ 138 >gi|332992276|gb|AEF02331.1| BadM/Rrf2 family transcriptional regulator [Alteromonas sp. SN2] Length = 161 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHSTRGPVPLADISERQAISLSYLEQLFSRLRKNQLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I+I +V++A +ES C + DC C S+ + + Sbjct: 61 PGGGYLLGRDAANISIGEVIRAVDESVDATRC--QGQADCQSGDRCLTHSLWQYLSDRIS 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++ L+ R Sbjct: 119 SFLNDITLGELMAKRD 134 >gi|207743635|ref|YP_002260027.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] gi|206595034|emb|CAQ61961.1| protein of unknown function upf0074 [Ralstonia solanacearum IPO1609] Length = 193 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116 GG L R AD +T+ D++ A +E +C K +C G C + Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQ 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 119 KMVEYLDSVSLQDLVDQQRERQP 141 >gi|169632345|ref|YP_001706081.1| hypothetical protein ABSDF0414 [Acinetobacter baumannii SDF] gi|169151137|emb|CAO99806.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 148 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K G + T+RG Sbjct: 4 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQGWIITIRGN 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 121 SLDQYTLGEVLQQPKS 136 >gi|154484576|ref|ZP_02027024.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC 27560] gi|149734424|gb|EDM50341.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC 27560] Length = 151 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A ++ + +AE IS +L I+ L K +V++ RG Sbjct: 16 MMISTKGRYALRVMIDLAQNDGESFVSLKDVAERQGISMKYLEMIVSLLHKGHMVKSQRG 75 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + + TI ++K TE + C C C + +K + Sbjct: 76 KAGGYKLVKKPAEYTIGSILKLTEGTLAPVGCLEEGAEKCDRATECITLPLWKKLDDQID 135 Query: 120 DVLTQYSIECLVRNR 134 + L ++E LV R Sbjct: 136 EYLESVTLEDLVEGR 150 >gi|327481765|gb|AEA85075.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas stutzeri DSM 4166] Length = 163 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES C C +C + Sbjct: 61 PGGGYQLSRDMAGIQVAQVIDAVNESVDATRCQGLGG--CHSGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L+ S+ LV NR ++++ Sbjct: 119 EFLSGISLADLV-NRQDVQQV 138 >gi|320334616|ref|YP_004171327.1| BadM/Rrf2 family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755905|gb|ADV67662.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus maricopensis DSM 21211] Length = 156 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + +A +S+ +L +I L +AG + +VRG Sbjct: 1 MWISTKAQYGLRALVEIGRRPGEAVPLKDVAANQGLSQHYLEQIASNLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L R D I DVV A E S C C G C + ++ A Sbjct: 61 HGGYKLTRTPDLINTWDVVVAMEGSLAPVACVEEGH-SCEREGVCATQDLWQRVEGAVRG 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL ++ L+R I+ Sbjct: 120 VLGGTTLADLIRENERIE 137 >gi|283852450|ref|ZP_06369719.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283572188|gb|EFC20179.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 150 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A P IA++ I + FL IL L + G V++ RG Sbjct: 1 MAVTQKCQYALRALFELARRKGQGPVPAGGIADSQAIPKRFLEVILHQLRQGGFVDSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L RPA +T+ +V++ + +C DCPL G C + A A Sbjct: 61 KEGGFYLARPAASVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGRCVFRGLWDDARAAL 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 V ++E LV ++ Sbjct: 121 VQVYDTRTLEDLVEEERRLE 140 >gi|193078481|gb|ABO13483.2| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978] Length = 158 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 118 SLDQYTLGEVLQQPKS 133 >gi|332532350|ref|ZP_08408230.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis ANT/505] gi|332038217|gb|EGI74663.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis ANT/505] Length = 163 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I++ D++ A +ES C + C C ++ Sbjct: 61 PGGGYLLGREAGVISVGDIISAVDESVDATRCQGAD-TGCQSGMRCLTHNLWSDLSARIE 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L ++ LV +S +K+I Sbjct: 120 EFLNNITLAELVE-KSDVKEI 139 >gi|330721810|gb|EGG99788.1| Nitrite-sensitive transcriptional repressor NsrR [gamma proteobacterium IMCC2047] Length = 142 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY RVL+Y + + + + +IAE + L K++Q L KAG + T+RG Sbjct: 1 MQLTRHTDYAFRVLIYLSSVEEGKLSTVGEIAEIFQVPINHLTKVVQQLGKAGFIITLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + I + VV+A E + C + C L +C L +L +A+ +F Sbjct: 61 KNGGIRLAHDPESILLGSVVRAMEATLDPVNCS---QPLCRLKINCRLKPILNRAIQSFI 117 Query: 120 DVLTQYSIECLVRNRS 135 + L +Y++ + +N+ Sbjct: 118 ETLDEYTLADISQNKE 133 >gi|312962917|ref|ZP_07777404.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens WH6] gi|311282944|gb|EFQ61538.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens WH6] Length = 225 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 63 MRLTTKGRYAVTAMLDLALHAQAGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES +C DC +C + Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 180 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 181 EFLSGISLADLVTRRE 196 >gi|26987577|ref|NP_743002.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida KT2440] gi|24982253|gb|AAN66466.1|AE016276_1 rrf2 family protein [Pseudomonas putida KT2440] Length = 163 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV+ R Sbjct: 119 EFLSGISLADLVKRRD 134 >gi|91775163|ref|YP_544919.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus flagellatus KT] gi|91709150|gb|ABE49078.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus flagellatus KT] Length = 156 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MRLTTKGRFAVTAMLDLALNEEEKPVTLAGISERQGISLSYLEQLFSRLRRNGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + +I++ D++ A +E +C K +C C + Sbjct: 61 PGGGYRLTKNHHEISVSDIITAVDELIDATQC--GGKENCHEGKPCMTHDLWSSLNAKIL 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L+ ++ LV ++ K+I Sbjct: 119 EYLSGVALSDLVASQREGKEI 139 >gi|295695250|ref|YP_003588488.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] gi|295410852|gb|ADG05344.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM 2912] Length = 155 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ RT+YG+R L+ A + P QIAE I E FL +I+ L +AGIV++VRG Sbjct: 1 MKLSNRTEYGLRALVTLAERSGGAPMSTRQIAEIEGIPEPFLDQIMVLLRRAGIVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117 GG L + D++++ +VV+ E S + C D C C V K Sbjct: 61 VNGGFLLAQSPDRVSVGEVVRVLEGSLLLIGCVDEENGDMWCERTPICHTRKVWVKLNEG 120 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 L ++ +V + Sbjct: 121 ITKALGSLTLAEVVETEEPTSQ 142 >gi|91784249|ref|YP_559455.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688203|gb|ABE31403.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia xenovorans LB400] Length = 176 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A+ +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|53803005|ref|YP_115276.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] gi|53756766|gb|AAU91057.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] Length = 162 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A H++ P ++ IA+ IS +L ++ L +AG+VE VRG Sbjct: 1 MRLTTKGRYAVTAMLDLAYHSETNPVTLTDIAKRQNISLSYLEQLFARLRRAGMVEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A +I I +++ A +E C K +C C + Sbjct: 61 PGGGYQLSRCASEINIAEIIAAVDEPIDSTRC--GGKANCQNNQPCLTHDLWMGLSEQIR 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L S+ ++ R ++++ Sbjct: 119 EYLASISLGEVLT-RQPVRQV 138 >gi|297566014|ref|YP_003684986.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850463|gb|ADH63478.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus DSM 9946] Length = 151 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ ++ YG+R L+ + + +AEA IS+ +L +I L +AG + +VRG Sbjct: 1 MWVSTKSQYGLRALVEIGLRAPEAVPLKDVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG +L +P +++T L+VV+A E S C + C G C ++ ++ A Sbjct: 61 KGGYKLGKPPEKLTALEVVEALEGSLAPVTCLDDPE-SCYHTGHCSTEALWKRVDLAMRG 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL S++ L+ R I+ Sbjct: 120 VLGSTSLKDLIEQRRIIE 137 >gi|304437228|ref|ZP_07397188.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369720|gb|EFM23385.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 147 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + IA ISE +L +++ PL +AG+VE+VRG Sbjct: 1 MKLSTKGRYSVTALYELALRYGKGVIPLHAIAATQGISEHYLEQLMVPLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115 +GG L P ++ITI ++ A E + +C + C G+C + + Sbjct: 61 AQGGYTLALPPEKITIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 120 Query: 116 NAFFDVLTQYSIECLVRN 133 ++ VL ++ LV+ Sbjct: 121 DSINSVLNNIALSDLVQR 138 >gi|152981590|ref|YP_001352941.1| iron-sulfur cluster assembly transcription factor [Janthinobacterium sp. Marseille] gi|151281667|gb|ABR90077.1| iron-sulfur cluster assembly transcription factor [Janthinobacterium sp. Marseille] Length = 157 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116 GG L R A+ +T+ D++ A +E +C P G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120 Query: 117 AFFDVLTQYSIECLVRNRSS 136 D L S++ LV + Sbjct: 121 KMVDYLDSVSLKDLVDQQKQ 140 >gi|313114322|ref|ZP_07799857.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623377|gb|EFQ06797.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 143 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ + H + + +IA ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLSEHQSEKYVPLKEIAARQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ +++ TE S C + C + +C + + + Sbjct: 61 KGGGYRLTRSPDQYTVGEILMLTEGSLAPVSCLTPNATPCSRMANCRTYEMWKGLDDLIS 120 Query: 120 DVLTQYSIECLVRNRSS 136 + ++ L R + Sbjct: 121 NYFGNITLADLARPDQA 137 >gi|254476056|ref|ZP_05089442.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] gi|214030299|gb|EEB71134.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] Length = 137 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 71/129 (55%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYCA ++D S+IAE C ISE L +++ L + G + T RGR GG+ L RPA +I Sbjct: 1 MYCAANSDRLVTKSEIAERCNISENHLAQVINQLAQLGYLRTQRGRNGGMSLGRPAGKIG 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I DV + E + + ECFA CPLV +C L L A AF+ L ++E LV + Sbjct: 61 IGDVFRDVEGTVPMVECFADADNTCPLVSACRLRVALADAAQAFYRSLDGITLEALVCDN 120 Query: 135 SSIKKIFNA 143 + +F A Sbjct: 121 DELFALFQA 129 >gi|144899516|emb|CAM76380.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 154 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ + H P ++ IAE IS +L ++ L K G+V++VRG Sbjct: 1 MKLSTKGRYAVMAMVDLSSHSQGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L RPA Q+ I D++ A +E C C G C + + N Sbjct: 61 PGGGYLLSRPAVQMRISDIILAVDEPIQTTRCSPGSPAGCHHNKGRCLTHDLWEELGNQI 120 Query: 119 FDVLTQYSIECLVRNR 134 + L+ S+ + R Sbjct: 121 YLYLSAVSLADVCERR 136 >gi|330831524|ref|YP_004394476.1| Rrf2 family protein [Aeromonas veronii B565] gi|328806660|gb|AEB51859.1| Rrf2 family protein [Aeromonas veronii B565] Length = 150 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFGISRNHVVKIVHQLGIKGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + DVV E +C + +C L G C + +LR+A+NAF Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 +VL +Y++ VR+ + + + Sbjct: 118 EVLGEYTLADAVRDPNRLCHLLG 140 >gi|251792922|ref|YP_003007648.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter aphrophilus NJ8700] gi|247534315|gb|ACS97561.1| iron-sulfur cluster assembly transcription factor IscR [Aggregatibacter aphrophilus NJ8700] Length = 156 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI+ ND P +S I+E IS +L ++ L + IV++VRG Sbjct: 1 MKLTSKGRYAVTAILDIAIYANDGPVSLSDISERQHISLSYLEQLFAKLRRNNIVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L ++I+I V+ A E+ +C K +C C ++ K Sbjct: 61 PGGGYKLGYTPNEISIGMVIAAVNENIETTKCLG--KGNCQNGAECLTHTLWEKLSLRIA 118 Query: 120 DVLTQYSIECLVRN 133 D L + ++ LV Sbjct: 119 DFLNEITLAELVSQ 132 >gi|197117656|ref|YP_002138083.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197087016|gb|ACH38287.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 137 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K G+V + RG Sbjct: 2 MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSSRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA QIT+ +VV+A E C C G C + V ++ Sbjct: 62 TGGGFVLARPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTEVV 119 Query: 120 DVLTQYSIECLVRNRSS 136 +L +I+ L R+ Sbjct: 120 RILDGVTIDSLARSPEQ 136 >gi|163742862|ref|ZP_02150246.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10] gi|161383826|gb|EDQ08211.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10] Length = 151 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 74/143 (51%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K +DY +R+L++ + H + +IAE + L KI Q L G VE+VRGR Sbjct: 1 MQISKFSDYALRILIHLSTHEEGLMSTREIAEMQKLPFNHLAKISQWLTHEGYVESVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ P + I+I +++ +E + EC C + +CGL +L +A FF Sbjct: 61 NGGMRMALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILTEAQEVFFA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L +++ ++ +K + A Sbjct: 121 ALDSKTLQNVLEGNRGMKNLIRA 143 >gi|229592453|ref|YP_002874572.1| hypothetical protein PFLU5069 [Pseudomonas fluorescens SBW25] gi|229364319|emb|CAY52066.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 225 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 63 MRLTTKGRYAVTAMLDLALHAQTGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES +C DC +C + Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 180 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 181 EFLSGISLADLVTRRE 196 >gi|254518111|ref|ZP_05130167.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911860|gb|EEH97061.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 132 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+L+K TDY R L+Y A + D + ++A+ ISE L KI+ L K +V +++GR Sbjct: 1 MYLSKFTDYSFRALVYLAENRDKLCTVEELAKKLEISEHHLKKIIHKLAKTDLVISMKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAFF 119 GG++L I + +VV+ TE++ +A+CF+ CP + C L ++ ++L+AF Sbjct: 61 TGGLKLGLEPQDINLGEVVRITEDNLNIAQCFSKEDC-CPFITSGCKLKGIMNESLSAFL 119 Query: 120 DVLTQYSIECLV 131 ++Y+++ L+ Sbjct: 120 HEFSRYTLQDLL 131 >gi|296158336|ref|ZP_06841167.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] gi|295891280|gb|EFG71067.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] Length = 176 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A+ +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|262373529|ref|ZP_06066807.1| transcriptional regulator [Acinetobacter junii SH205] gi|262311282|gb|EEY92368.1| transcriptional regulator [Acinetobacter junii SH205] Length = 150 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A ++ P I+ IA+ +S+ L KI+ + K + T RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSEIPYTIADIAKDLHVSQNHLVKIVHFMGKQQWIVTTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + ++V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPSARTLRLGEIVRVLQGHQQIVEC---NTPPCVLRSQCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRN 133 L QY++ +V++ Sbjct: 118 SLDQYTLGEVVQH 130 >gi|153810455|ref|ZP_01963123.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174] gi|149833634|gb|EDM88715.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174] Length = 144 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ +H + I IA IS+ +L +++ L KAG+V++ RG Sbjct: 1 MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG RL RPA +I++ DV++ E S A+C + C C V ++ ++ Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQCSGMEDESTCENHDICVTKYVWKRINDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + ++ L+ ++ Sbjct: 121 TQAVDTMMLDQLIEESRKKQQ 141 >gi|83647156|ref|YP_435591.1| iron-sulfur cluster assembly transcription factor IscR [Hahella chejuensis KCTC 2396] gi|83635199|gb|ABC31166.1| iron-sulfur cluster assembly transcription factor IscR [Hahella chejuensis KCTC 2396] Length = 159 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+ IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHGNSGPVSLADISARQGISLSYLEQLFAKLRRSRLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L RP + + ++++A ES C K DC C + + Sbjct: 61 PGGGYKLARPLGETAVAEIIEAVNESIDATRC--GRKGDCQGGEICLTHHLWQDLSERIH 118 Query: 120 DVLTQYSIECLVRNRS 135 D L+ S+E LV +R+ Sbjct: 119 DYLSSISLEELVASRA 134 >gi|187924557|ref|YP_001896199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Burkholderia phytofirmans PsJN] gi|187715751|gb|ACD16975.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phytofirmans PsJN] Length = 176 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A+ +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|33596274|ref|NP_883917.1| putative DNA-binding protein [Bordetella parapertussis 12822] gi|33602066|ref|NP_889626.1| putative DNA-binding protein [Bordetella bronchiseptica RB50] gi|33566043|emb|CAE36939.1| putative conserved DNA-binding protein [Bordetella parapertussis] gi|33576504|emb|CAE33582.1| putative conserved DNA-binding protein [Bordetella bronchiseptica RB50] Length = 156 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TD+G+RV+MY D P I +IA IS L K++ L + G + R Sbjct: 12 MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 71 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + I ++V+ E+ + C + C L G+C L+ L ++L AF Sbjct: 72 GKGGGLRLARDAVEYRIGELVRVLEDQGALVNCA---QPPCVLNGACRLSGALAESLQAF 128 Query: 119 FDVLTQYSIECLVRNRSSI 137 + L Y+++ LVR +++ Sbjct: 129 YRTLDGYTLDDLVRAPTAL 147 >gi|295676942|ref|YP_003605466.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] gi|295436785|gb|ADG15955.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] Length = 176 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A+++T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAEEVTVADIIIAVDEPLDATQC--GGKGTCEGTKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|255066423|ref|ZP_05318278.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sicca ATCC 29256] gi|255049303|gb|EET44767.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sicca ATCC 29256] Length = 148 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P QI I ++ A E+ +C S K +C C + Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L+ +++ ++ ++S Sbjct: 119 DYLSSVTLQSIIEQKNS 135 >gi|148264218|ref|YP_001230924.1| BadM/Rrf2 family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397718|gb|ABQ26351.1| transcriptional regulator, BadM/Rrf2 family [Geobacter uraniireducens Rf4] Length = 137 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K GIV + RG Sbjct: 2 MELTRKGEYAIRGIIYLAQQQPGKVSLISEIAHASDVPQTFLAKIFQSFAKLGIVNSSRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA IT+ +VV+A E C C G C + V R + Sbjct: 62 TGGGFTLGRPAASITLREVVEAVEGPIIPNRCLMGTGY-CDRGGHCNVHQVWRTVQSQVV 120 Query: 120 DVLTQYSIECLVRNRS 135 ++L +IE L + + Sbjct: 121 NILDSVTIEELAKQKQ 136 >gi|299768660|ref|YP_003730686.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1] gi|298698748|gb|ADI89313.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1] Length = 145 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPDALNCNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 118 SLDQYTLGEVLQQSKS 133 >gi|291619084|ref|YP_003521826.1| YjeB [Pantoea ananatis LMG 20103] gi|291154114|gb|ADD78698.1| YjeB [Pantoea ananatis LMG 20103] gi|327395416|dbj|BAK12838.1| transcriptional regulator YjeB [Pantoea ananatis AJ13355] Length = 152 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + I+++ + +S + KI+ L +AG V +RG+ Sbjct: 7 QLTSFTDYGLRALIYMATLPEGRLTNITEVTDTYGVSRNHMVKIINQLSRAGFVSAIRGK 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A I I +VV+ E + +C +C + +C L L A+ F Sbjct: 67 NGGIRLGMSARDIVIGEVVRKME-PLQLVDC-----SNCSIAPACRLKKALHDAVQLFLQ 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + + +I Sbjct: 121 ELDGYTLADLVEGNTPLYEII 141 >gi|209519995|ref|ZP_03268774.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] gi|209499592|gb|EDZ99668.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] Length = 176 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A+ +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGTCEGTKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|84393609|ref|ZP_00992361.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01] gi|84375750|gb|EAP92645.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01] Length = 147 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y AI+N + I IA + IS+ L KI+Q L G + RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L QI I +V+ E+ + ECF C + +C L ++ +A F+ Sbjct: 61 NGGLKLSCHPSQINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFYK 119 Query: 121 VLTQYSIECLVRNRSSIK 138 L YS++ L+ S K Sbjct: 120 SLDAYSLQDLLGEGHSYK 137 >gi|299531825|ref|ZP_07045227.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] gi|298720266|gb|EFI61221.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] Length = 153 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+LM+ A + IS++A+A ISE L K+ L G +ETVRG+ Sbjct: 1 MRLTLMTDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R QI I V++ E F + ECF + C L G C L +L+ AL++F Sbjct: 61 GGGMRLAREPKQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMA 119 Query: 121 VLTQYSIECLV 131 L +++ L+ Sbjct: 120 HLDGFTLADLI 130 >gi|261856769|ref|YP_003264052.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261837238|gb|ACX97005.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 167 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ P ++ IA+ +S +L ++ L +AG+V++VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHDHGDPTALADIADRQELSLSYLEQLFAQLRRAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L RP+ +I + ++V A +E V C S + DC C + Sbjct: 61 PGGGYQLTRPSTEINVAEIVIAVDEDVDVTRC--SGRGDCQNGHKCLSHDLWMGLSEQIR 118 Query: 120 DVLTQYSIECLVRNRSSI 137 LT + L+ N I Sbjct: 119 SFLTGIHLADLLNNPELI 136 >gi|189424306|ref|YP_001951483.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter lovleyi SZ] gi|189420565|gb|ACD94963.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ] Length = 134 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ DY IR ++Y A + S+IA A + + FL KI Q K GIV++ RG Sbjct: 2 MELTRKGDYAIRGIIYLASQPPNKISLLSEIAVAVDVPQTFLAKIFQQFSKTGIVKSFRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P + IT+L VV+A E C +C SC + V R+ Sbjct: 62 TGGGFLLAGPPESITLLQVVEAVEGPILPNRCVL-KPGECERDASCTVHPVWRQVQQQVR 120 Query: 120 DVLTQYSIECLV 131 +L +++ L Sbjct: 121 SILAGITLKDLA 132 >gi|166031726|ref|ZP_02234555.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC 27755] gi|166028179|gb|EDR46936.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC 27755] Length = 155 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R ++ A ++ P I IA +SE +L ++ L KAG+V+++RG Sbjct: 5 KLSTKGKYGLRAIIDLARFSEKEPVSIGCIATRQKLSERYLEQLFALLKKAGLVKSIRGA 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I++ DV++A E + C A + C C V +K ++ Sbjct: 65 SGGYVLARDASEISVGDVLRALEGNLEPVRCAAFYSEEGCMASDECVTKYVWQKINDSIN 124 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + + ++ LV+ + Sbjct: 125 KTVNEIKLDELVKESKELNP 144 >gi|120611113|ref|YP_970791.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|326317578|ref|YP_004235250.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120589577|gb|ABM33017.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli AAC00-1] gi|323374414|gb|ADX46683.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 178 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A IT+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV ++ Sbjct: 119 VEFLDSVTLQKLVDDQ 134 >gi|170694738|ref|ZP_02885889.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] gi|170140369|gb|EDT08546.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] Length = 176 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A+ +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|192359869|ref|YP_001981952.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio japonicus Ueda107] gi|190686034|gb|ACE83712.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio japonicus Ueda107] Length = 162 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P ++ I+ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDSGPVSLADISARQGISLSYLEQLFARLRQFNLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L I++ VV A ES C K +C C + + Sbjct: 61 PGGGYQLASSTCDISVAQVVDAVSESLDATRC--EGKGNCQEGEVCLTHHLWQDLSAQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L S+ LV RS I+ + Sbjct: 119 QFLNSISLADLVA-RSDIQAV 138 >gi|257792249|ref|YP_003182855.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|317490177|ref|ZP_07948665.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|325833540|ref|ZP_08165989.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] gi|257476146|gb|ACV56466.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|316910671|gb|EFV32292.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|325485464|gb|EGC87933.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] Length = 136 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y +R+++ A + + Q AE +S +L ++ LVKAG++++VR Sbjct: 1 MMISTRGRYALRLMIDIARQGEAGALVTMRQAAEREDLSVKYLEQLGGALVKAGVLKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L RPADQIT DV++ATE S C CP C + R A Sbjct: 61 GVSGGYLLARPADQITAGDVLRATEGSCAPVSCLEDGAEACPRRDQCVAINFWRGLDQAI 120 Query: 119 FDVLTQYSIECLVR 132 D + ++ LV+ Sbjct: 121 EDYVDNVTLADLVQ 134 >gi|291614830|ref|YP_003524987.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584942|gb|ADE12600.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans lithotrophicus ES-1] Length = 152 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 72/138 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A I++I++ IS L K++ L + T RG+ Sbjct: 1 MRLTIYTDYSLRVLLYLASKPGETATITEISDFYNISRNHLVKVVHNLGLNEFIITSRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L R A+ I + DVV+ TE + ECF +C + +C L S+L + +AF Sbjct: 61 NGGIKLARAAEAILLSDVVRKTEPDMDLLECFNESTDNCVISSACRLKSMLYEGRSAFMA 120 Query: 121 VLTQYSIECLVRNRSSIK 138 VL + ++ R + + Sbjct: 121 VLEKNTLADAARPLAQAR 138 >gi|163856927|ref|YP_001631225.1| putative DNA-binding protein [Bordetella petrii DSM 12804] gi|163260655|emb|CAP42957.1| putative conserved DNA-binding protein [Bordetella petrii] Length = 145 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY +D P I +IA +S + K++ L + G V T R Sbjct: 1 MQLTRYTDFGLRVLMYLTQGDDRAVPATIPEIAARFNVSRNHMVKVVHFLARQGWVATTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL P + D+V+A E + C + C L G C L+ VL +L F Sbjct: 61 GKGGGLRLAHPPSAYRVGDLVRALEHQGALINCA---EPPCALNGLCRLSGVLADSLQVF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 +D L ++++ LVR+ ++ Sbjct: 118 YDALNRHTLADLVRSPTA 135 >gi|78484962|ref|YP_390887.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363248|gb|ABB41213.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira crunogena XCL-2] Length = 142 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P ++ I+E IS +L +I L K+G+V + RG Sbjct: 1 MKLTSKGRYAVTAMLDIALNQSKGPITLAMISERQDISLSYLEQIFAKLKKSGLVLSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A++I++ +V+ A E +C K +C C + Sbjct: 61 PGGGYRLSRDANEISVSEVIGAVNEDLEPRKC--RGKSNCQNGVQCLSHELWADLSGMIN 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L +++ ++ RSSI+ + Sbjct: 119 EFLDGVTLQQIIDRRSSIQSV 139 >gi|266624781|ref|ZP_06117716.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] gi|288863341|gb|EFC95639.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium hathewayi DSM 13479] Length = 139 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ A D + +IA ISE +L +++ LV+ ++ +RG Sbjct: 1 MMISTRGRYALRVMLDLAQQTTDRYVPLKEIANRQEISEKYLEIVIKVLVQNKLLTGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R + T+ ++++ TE S C +C G C V ++ Sbjct: 61 KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACAEESYTECSRRGFCLSRPVWQELDKIIN 120 Query: 120 DVLTQYSIECLVRNRSS 136 + L ++E L+++ Sbjct: 121 EYLDGITLEDLLKSPQK 137 >gi|332289844|ref|YP_004420696.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis UMN179] gi|330432740|gb|AEC17799.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis UMN179] Length = 156 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ P ++ I+E IS +L ++ L + G+V++ RG Sbjct: 1 MKLTSKGRYAVTAILDIALNAGSGPVTLADISERQKISLSYLEQLFAKLRRHGLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +++I+I ++ A E+ +C + K +C C S+ +K + Sbjct: 61 PGGGYQLGYASEEISIGMIISAVNENVQATKCKS--KGNCQDGVQCLTHSLWQKLSDRIE 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L + ++ LV ++ + Sbjct: 119 DFLNEITVAELVSSQQEKMQ 138 >gi|326794498|ref|YP_004312318.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Marinomonas mediterranea MMB-1] gi|326545262|gb|ADZ90482.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas mediterranea MMB-1] Length = 166 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+D P +S I+ IS +L ++ L K +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDKGPVSLSDISARQGISLSYLEQLFAKLRKQSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I + +V A ES C + DC +C + + Sbjct: 61 PGGGYLLSRERSDIFVAQIVDAVNESVDATGC--RGRSDCQGGTTCLTHHLWCDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 D L+ S+E LV+ + Sbjct: 119 DFLSGISLEKLVQRKD 134 >gi|186476217|ref|YP_001857687.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum STM815] gi|184192676|gb|ACC70641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum STM815] Length = 174 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKAL 115 GG L R A+ +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKHHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + S Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139 >gi|210635349|ref|ZP_03298496.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279] gi|210158434|gb|EEA89405.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279] Length = 160 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H D + QIA ISE +L IL LV+ G++ +RG Sbjct: 15 MLVSTKGRYALRVMVDLAEHRDEGRIPLRQIAVRQDISEKYLENILSTLVRHGMLSGLRG 74 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L R ++ T+ ++++ TE S C C +C V + Sbjct: 75 KGGGYCLTREPEEFTLGEILRLTEGSLSPVSCLNGPHNTCERAATCRTVRVWTELDRMIQ 134 Query: 120 DVLTQYSIECLV 131 + L +I L+ Sbjct: 135 EYLDGVTIADLM 146 >gi|53803301|ref|YP_114917.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] gi|53757062|gb|AAU91353.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] Length = 150 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD+ +RVL+Y + I +IAE IS L K++ L AG++ T+RG Sbjct: 1 MQLTQFTDFSLRVLIYLVRLPEPGMATIPEIAEYYRISRNHLVKVVNTLANAGLLVTMRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL RPAD ITI +VV+ TE + + ECF C + C L ++L +A F Sbjct: 61 KGGGLRLARPADTITIAEVVRLTEPNMNLVECFDPKASHCRIDRGCFLKAILYEARKDFL 120 Query: 120 DVLTQYSIECLVR 132 L ++++ R Sbjct: 121 AALERHTLADAAR 133 >gi|33593212|ref|NP_880856.1| putative DNA-binding protein [Bordetella pertussis Tohama I] gi|33563587|emb|CAE42488.1| putative conserved DNA-binding protein [Bordetella pertussis Tohama I] gi|332382623|gb|AEE67470.1| putative DNA-binding protein [Bordetella pertussis CS] Length = 145 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + TD+G+RV+MY D P I +IA IS L K++ L + G + R Sbjct: 1 MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + I ++V+ E+ + C + C L G+C L+ L ++L AF Sbjct: 61 GKGGGLRLARDAVEYRIGELVRVLEDQGALVNCA---QPPCVLNGACRLSGALAESLQAF 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 + L Y+++ LVR +++ Sbjct: 118 YRTLDGYTLDDLVRAPTAL 136 >gi|261377488|ref|ZP_05982061.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria cinerea ATCC 14685] gi|269146218|gb|EEZ72636.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria cinerea ATCC 14685] Length = 148 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAIKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P QI I ++ A E+ +C S K +C C + Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L+ +++ ++ ++S Sbjct: 119 DYLSSVTLQSIIEQKNS 135 >gi|319762894|ref|YP_004126831.1| iron-sulfur cluster assembly transcription factor iscr [Alicycliphilus denitrificans BC] gi|330824973|ref|YP_004388276.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117455|gb|ADU99943.1| iron-sulfur cluster assembly transcription factor IscR [Alicycliphilus denitrificans BC] gi|329310345|gb|AEB84760.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus denitrificans K601] Length = 178 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A IT+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHDLWATLNQRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV ++ Sbjct: 119 VEFLDSVTLQKLVDDQ 134 >gi|167031899|ref|YP_001667130.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida GB-1] gi|166858387|gb|ABY96794.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida GB-1] Length = 182 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 20 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + I + V+ A ES C DC +C + Sbjct: 80 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 137 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 138 EFLSGISLADLVMRRE 153 >gi|16078003|ref|NP_388819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. subtilis str. 168] gi|221308776|ref|ZP_03590623.1| hypothetical protein Bsubs1_05178 [Bacillus subtilis subsp. subtilis str. 168] gi|221313099|ref|ZP_03594904.1| hypothetical protein BsubsN3_05114 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318025|ref|ZP_03599319.1| hypothetical protein BsubsJ_05058 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322299|ref|ZP_03603593.1| hypothetical protein BsubsS_05159 [Bacillus subtilis subsp. subtilis str. SMY] gi|6136719|sp|O07573|NSRR_BACSU RecName: Full=HTH-type transcriptional regulator nsrR gi|2226194|emb|CAA74483.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633273|emb|CAB12777.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. subtilis str. 168] Length = 146 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A + I QIAE IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF ++K C + CGL VL +AL A+ Sbjct: 61 RGGGIRLGMDPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++ LV+N+ I K+ Sbjct: 121 AVLDKYTLRDLVKNKEDIMKLL 142 >gi|119898309|ref|YP_933522.1| Rrf2 family protein [Azoarcus sp. BH72] gi|119670722|emb|CAL94635.1| Rrf2 family protein [Azoarcus sp. BH72] Length = 160 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A D P ++ IA+ IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLASRQADGPVTLAGIADRQKISLSYLEQLFGKLRRHKLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R IT+ D++ A +E +C K +C C + + Sbjct: 61 PGGGYRLARDMAAITVADIIIAVDEPLDATQC--GGKQNCHDEHRCVTHDLWANLNKRMY 118 Query: 120 DVLTQYSIECLVRNR 134 L S+ LV+ Sbjct: 119 AYLDSVSLAALVQRE 133 >gi|121594494|ref|YP_986390.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|222110831|ref|YP_002553095.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY] gi|120606574|gb|ABM42314.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] gi|221730275|gb|ACM33095.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus TPSY] Length = 178 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A IT+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV ++ Sbjct: 119 VEFLDSVTLQKLVDDQ 134 >gi|213158841|ref|YP_002320839.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|215482177|ref|YP_002324359.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|301345004|ref|ZP_07225745.1| hypothetical protein AbauAB0_02147 [Acinetobacter baumannii AB056] gi|301512065|ref|ZP_07237302.1| hypothetical protein AbauAB05_10807 [Acinetobacter baumannii AB058] gi|301596098|ref|ZP_07241106.1| hypothetical protein AbauAB059_09799 [Acinetobacter baumannii AB059] gi|332853133|ref|ZP_08434570.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332868621|ref|ZP_08438277.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] gi|213058001|gb|ACJ42903.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|213988893|gb|ACJ59192.1| rrf2 family protein (transcriptional regulator) family protein [Acinetobacter baumannii AB307-0294] gi|332728802|gb|EGJ60161.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332733298|gb|EGJ64492.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] Length = 145 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 118 SLDQYTLGEVLQQPKS 133 >gi|260557021|ref|ZP_05829238.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409627|gb|EEX02928.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 148 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRILMYVARPSDTPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 121 SLDQYTLGEVLQQPKS 136 >gi|82701807|ref|YP_411373.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409872|gb|ABB73981.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira multiformis ATCC 25196] Length = 157 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H+ D P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALHSADGPVTLAGISERQKISLSYLEQLFGKLRRSKLVGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +P +++++D++ A +E +C K +C C + Sbjct: 61 PGGGYRLTKPMSEVSVVDIILAVDEPIDATQC--GGKENCHNDQRCMTHDLWANLNARIR 118 Query: 120 DVLTQYSIECLVRNRS 135 D L ++E LV N Sbjct: 119 DYLALVTLEQLVSNPK 134 >gi|225025112|ref|ZP_03714304.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC 23834] gi|224942073|gb|EEG23282.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC 23834] Length = 173 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P ++ I+ IS +L ++ L +AG+VE+VRG Sbjct: 22 MRLTTKGRFAVTAMLDLALYGRENPVSLNAISGRQNISLSYLEQLFGKLRRAGLVESVRG 81 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I I +++ A E+ C + +C C + Sbjct: 82 PGGGYLLSRQPGSINIAEIIYAAEDKLDATRC--GGQTNCHKGAPCLTHDLWESLNQTIQ 139 Query: 120 DVLTQYSIECLVRNRSS 136 L S++ ++ R Sbjct: 140 GYLNSVSLQDVLNKRDG 156 >gi|291295978|ref|YP_003507376.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470937|gb|ADD28356.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM 1279] Length = 159 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + YG+R L+ + + +AEA IS +L +I L +AG + +VRG Sbjct: 1 MWVSTKAQYGLRALVEIGLRQPQAVPLKDVAEAQGISLHYLEQIAAQLRRAGFIRSVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL RP++ I L+VV+A E S C ++ C G C ++ ++ A Sbjct: 61 RGGYRLGRPSEHIDALEVVEALEGSLAPVICLDDPEL-CWQTGHCSTETLWKRVDEAMRG 119 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +++ L+ R I+ Sbjct: 120 VLRSTTLKDLIEERRLIE 137 >gi|77460834|ref|YP_350341.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384837|gb|ABA76350.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens Pf0-1] Length = 163 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES +C DC +C + Sbjct: 61 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVTRRE 134 >gi|294651640|ref|ZP_06728944.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|292822489|gb|EFF81388.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 150 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I+ IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + ++V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGLRLNPEAKSLKLGEIVRTLQGHQHIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRN 133 L QY++ ++++ Sbjct: 118 SLNQYTLGEVIQH 130 >gi|49080808|gb|AAT50060.1| PA3815 [synthetic construct] Length = 164 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV + Sbjct: 119 EFLSGISLADLVSRQE 134 >gi|15599010|ref|NP_252504.1| IscR [Pseudomonas aeruginosa PAO1] gi|107103335|ref|ZP_01367253.1| hypothetical protein PaerPA_01004404 [Pseudomonas aeruginosa PACS2] gi|116051840|ref|YP_789317.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|152987595|ref|YP_001346682.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas aeruginosa PA7] gi|218889901|ref|YP_002438765.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58] gi|254236719|ref|ZP_04930042.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|296387669|ref|ZP_06877144.1| putative Rrf2 family protein [Pseudomonas aeruginosa PAb1] gi|313109233|ref|ZP_07795201.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016] gi|9949989|gb|AAG07202.1|AE004799_8 IscR [Pseudomonas aeruginosa PAO1] gi|115587061|gb|ABJ13076.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126168650|gb|EAZ54161.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|150962753|gb|ABR84778.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas aeruginosa PA7] gi|218770124|emb|CAW25886.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58] gi|310881703|gb|EFQ40297.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016] Length = 163 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV + Sbjct: 119 EFLSGISLADLVSRQE 134 >gi|184159604|ref|YP_001847943.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|239503240|ref|ZP_04662550.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|332876089|ref|ZP_08443873.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6014059] gi|183211198|gb|ACC58596.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509514|gb|ADX04968.1| transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323519534|gb|ADX93915.1| hypothetical protein ABTW07_3498 [Acinetobacter baumannii TCDC-AB0715] gi|332735707|gb|EGJ66750.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6014059] Length = 145 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 118 SLDQYTLGEVLQQPKS 133 >gi|254242506|ref|ZP_04935828.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126195884|gb|EAZ59947.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 163 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV + Sbjct: 119 EFLSGISLADLVSRQE 134 >gi|237750663|ref|ZP_04581143.1| transcriptional regulator [Helicobacter bilis ATCC 43879] gi|229373753|gb|EEO24144.1| transcriptional regulator [Helicobacter bilis ATCC 43879] Length = 139 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+K +DY R L+Y A H++ N I +A IS+ L KI+ L K ++T RGR Sbjct: 1 MQLSKFSDYSFRALIYLAQHDNTLNTIENMASELRISQNHLKKIIHKLSKGQFIKTFRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG++L + I + DV+ TE + EC S +CP +C L S++ KA NAF Sbjct: 61 EGGIKLAKKPKDIGLADVLLYTEINTDFVECLKHNSKHTECPYQINCNLKSIIHKAKNAF 120 Query: 119 FDVLTQYSIECLVR 132 +YS++ L++ Sbjct: 121 MQEFQKYSLQDLLQ 134 >gi|226953865|ref|ZP_03824329.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226835348|gb|EEH67731.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 150 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I+ IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + ++V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGLRLNPEAKSLKLGEIVRTLQGHQQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRN 133 L QY++ ++++ Sbjct: 118 SLNQYTLGEVIQH 130 >gi|46914863|emb|CAG21640.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 151 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V+TVRG+ Sbjct: 9 QLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRGK 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL PA++I + DVV+ATE + C C + +C L +L A +AF Sbjct: 69 NGGIRLGMPANRIILGDVVRATE-PLQIVNCSEDF---CHITPACQLKGILASARSAFLA 124 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L ++++ L+ N + + + Sbjct: 125 ELDKHTLLSLIDNNPPLLVLLD 146 >gi|237808765|ref|YP_002893205.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] gi|237501026|gb|ACQ93619.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] Length = 171 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 4 MRLTSKGRYAVTAMLDVALHAELGPVPLADISERQGISLSYLEQLFARLRKNGLVSSVRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL ADQI + ++ A ES C C C S+ R Sbjct: 64 PGGGYRLGADADQIAVGKIIAAVNESVDATRCHGESG--CQGGVQCLTHSLWRDLSARIS 121 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L + ++ LVR ++ +K+I Sbjct: 122 DFLNEITLGELVR-QAEVKRI 141 >gi|332139491|ref|YP_004425229.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549513|gb|AEA96231.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype'] Length = 150 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 76/136 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ RVL+Y A+ + + S+IA+A +S L K++ L+ G + +GR Sbjct: 1 MKINTFTNLAFRVLIYLALRKNQTVKTSEIADAYFVSFNHLKKVITLLIDQGYIIGTKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + A+ I I +V + T E +AECFAS C + +C L ++L+ A + F Sbjct: 61 GGGIRLAKEANLINIGEVFRLTIEDVALAECFASPTNKCVISPTCRLKTILQDAADKFIS 120 Query: 121 VLTQYSIECLVRNRSS 136 L Q+++ LV++R Sbjct: 121 ELDQFTLHDLVKDREG 136 >gi|229543731|ref|ZP_04432791.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] gi|229328151|gb|EEN93826.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] Length = 139 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A P + IA++ +SE +L +++ PL AG V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKRYGMGPTSLKSIAQSQNLSEHYLEQLISPLRNAGFVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R QIT DV++ E E + + + +A Sbjct: 61 AYGGYVLTRKPSQITAGDVIRVLEGPITPVEGIEDEEP--------VKRQLWIRIRDAVK 112 Query: 120 DVLTQYSIECLVRNRSSIKK 139 DVL +IE L + R + Sbjct: 113 DVLDSTTIEDLAKYREDTEP 132 >gi|167837169|ref|ZP_02464052.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis MSMB43] Length = 180 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKAL 115 GG L R A +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGTCEGSKQHDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139 >gi|56479101|ref|YP_160690.1| iron-sulphur cluster assembly transcription factor IscR [Aromatoleum aromaticum EbN1] gi|56315144|emb|CAI09789.1| Iron-sulphur cluster assembly transcription factor IscR [Aromatoleum aromaticum EbN1] Length = 160 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A + P ++ IAE IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMIDLASRQTEGPVTLAGIAERQKISLSYLEQLFGKLRRHKLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R +IT+ DV+ A +E +C + +C C + + Sbjct: 61 PGGGYRLARDMSRITVADVIVAVDEPLDATQC--GGRQNCHDEQRCLTHDLWANLNKRMY 118 Query: 120 DVLTQYSIECLV 131 + L ++ LV Sbjct: 119 EYLDSVTLAALV 130 >gi|110834734|ref|YP_693593.1| rrf2 family protein [Alcanivorax borkumensis SK2] gi|110647845|emb|CAL17321.1| rrf2 family protein [Alcanivorax borkumensis SK2] Length = 154 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + QI + V+ A +ES C DC C + Sbjct: 61 PGGGYQLSRNSGQIDVAAVIAAVDESVDATRC--GGHGDCQEGDICLTHHLWCDLSGQIQ 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L+ ++ LV R ++++ Sbjct: 119 DFLSGITLGELVA-RQEVRQV 138 >gi|148260837|ref|YP_001234964.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326404231|ref|YP_004284313.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146402518|gb|ABQ31045.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum JF-5] gi|325051093|dbj|BAJ81431.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 139 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 66/128 (51%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LT TDYG+R LM AI D S +A +S L KIL LV G + + RG G Sbjct: 5 LTNYTDYGLRALMLLAIEPDRVQSTSALATRLDVSRHHLAKILMDLVAGGYLLSSRGPTG 64 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 GVRL +P QI I DVV+ E + ECF + C L+ +C L L +A +AF + L Sbjct: 65 GVRLAKPPGQIRIGDVVRYLERDQAMVECFRADGGQCNLLPACRLRQTLNRAKDAFIETL 124 Query: 123 TQYSIECL 130 S+ + Sbjct: 125 NGKSLADM 132 >gi|78223138|ref|YP_384885.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194393|gb|ABB32160.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 135 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR +++ A + IS+IAEA + + FL KILQ K GIV++ RG Sbjct: 2 MELTRKGEYAIRGIIHLAQLPPGKVALISEIAEATDVPQTFLAKILQSFAKIGIVQSFRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +IT+ +VV+A E C C +CG+ V R+ Sbjct: 62 AGGGFMLGRSASRITLREVVEAVEGPILPNRCLIG-SGTCERDSTCGVHPVWRQVQQRVV 120 Query: 120 DVLTQYSIECLVRNR 134 +VL +IE L ++ Sbjct: 121 EVLDGVTIEDLATHK 135 >gi|88812644|ref|ZP_01127891.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231] gi|88790060|gb|EAR21180.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231] Length = 145 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MY ++ + + IS+IAE IS L K++ L + G VETVRG+ GG+RL I Sbjct: 1 MYLSLKENELSTISEIAERYAISRNHLMKVVYELGRLGYVETVRGKHGGMRLRHSPASIN 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +VV+ TE + ECF+S C L SC L VLR+AL AF VL +YS+ L+ + Sbjct: 61 LGEVVRRTENDMALVECFSSQNY-CRLTPSCVLHGVLREALQAFLAVLDRYSLADLLEPK 119 Query: 135 SSIKKIF 141 + + Sbjct: 120 QKLANLL 126 >gi|321314662|ref|YP_004206949.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis BSn5] gi|291483405|dbj|BAI84480.1| hypothetical protein BSNT_01615 [Bacillus subtilis subsp. natto BEST195] gi|320020936|gb|ADV95922.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis BSn5] Length = 146 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A + I QIAE IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF ++K C + CGL VL +AL A+ Sbjct: 61 RGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++ LV+N+ I K+ Sbjct: 121 AVLDKYTLRDLVKNKEDIMKLL 142 >gi|167563359|ref|ZP_02356275.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia oklahomensis EO147] gi|167570529|ref|ZP_02363403.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia oklahomensis C6786] Length = 179 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGACEGTKQPDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139 >gi|269217073|ref|ZP_06160927.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] gi|269129210|gb|EEZ60295.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] Length = 168 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + + +IA ISE +L IL+ LVK G++ +RG Sbjct: 26 MMISTKGRYALRVMVDLAEHMSCSYTPLKEIARRQEISEKYLESILKVLVKNGLLVGLRG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R T+ ++++ TE C + C +GSC + R Sbjct: 86 KGGGYRLTRDPSLYTVGEILRLTEGGLAQVPCLDEDESSCDRMGSCRTVEMWRGLDKVIN 145 Query: 120 DVLTQYSIECLVRNRSS 136 D L ++ L Sbjct: 146 DYLDGITVADLAERIDE 162 >gi|302877884|ref|YP_003846448.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302580673|gb|ADL54684.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 151 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ P ++ I+E IS +L ++ L ++ +VE+VRG Sbjct: 1 MRLTTKGRFAVTAMVDLAMNGGRGPVTLASISERQKISLSYLEQLFGKLRRSNLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +I I ++V A +E C + K DC C ++ + Sbjct: 61 PGGGYYLAKTATKIKIAEIVVAVDEPLDATYC--AEKGDCRDGQPCLTHNLWMGLNERIY 118 Query: 120 DVLTQYSIECLVRNRSS 136 L +++ LV +S Sbjct: 119 SYLDSINLQQLVEGQSK 135 >gi|257440868|ref|ZP_05616623.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] gi|257196648|gb|EEU94932.1| iron-sulfur cluster assembly transcription factor IscR [Faecalibacterium prausnitzii A2-165] Length = 143 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + + ++AE ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLAEHQAERYVPLKEVAERQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ +++ TE S C C + +C ++ + + Sbjct: 61 KGGGYRLTRTPDQYTVAEILLLTEGSLAPVSCLVPGAPACERLPNCRTYTMWKGLNDMIA 120 Query: 120 DVLTQYSIECLVRNRSS 136 D + ++ L + Sbjct: 121 DYFGKITLADLAAPDQA 137 >gi|53719900|ref|YP_108886.1| hypothetical protein BPSL2290 [Burkholderia pseudomallei K96243] gi|53723804|ref|YP_103329.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei ATCC 23344] gi|67643001|ref|ZP_00441751.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei GB8 horse 4] gi|76811684|ref|YP_334120.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710b] gi|121598333|ref|YP_993530.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei SAVP1] gi|124385259|ref|YP_001029043.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10229] gi|126440264|ref|YP_001059626.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 668] gi|126453431|ref|YP_001066909.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106a] gi|134277379|ref|ZP_01764094.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 305] gi|167000648|ref|ZP_02266459.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei PRL-20] gi|167720354|ref|ZP_02403590.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei DM98] gi|167739346|ref|ZP_02412120.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 14] gi|167816561|ref|ZP_02448241.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 91] gi|167824956|ref|ZP_02456427.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 9] gi|167846474|ref|ZP_02471982.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei B7210] gi|167895052|ref|ZP_02482454.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 7894] gi|167903439|ref|ZP_02490644.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei NCTC 13177] gi|167911687|ref|ZP_02498778.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 112] gi|167919687|ref|ZP_02506778.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei BCC215] gi|217420795|ref|ZP_03452300.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 576] gi|237813020|ref|YP_002897471.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei MSHR346] gi|242314619|ref|ZP_04813635.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106b] gi|254184365|ref|ZP_04890955.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1655] gi|254191399|ref|ZP_04897903.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pasteur 52237] gi|254195785|ref|ZP_04902211.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei S13] gi|254200287|ref|ZP_04906653.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei FMH] gi|254209363|ref|ZP_04915709.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei JHU] gi|254258189|ref|ZP_04949243.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710a] gi|254297029|ref|ZP_04964482.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 406e] gi|254357966|ref|ZP_04974239.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei 2002721280] gi|262193304|ref|YP_001081037.2| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10247] gi|52210314|emb|CAH36293.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52427227|gb|AAU47820.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei ATCC 23344] gi|76581137|gb|ABA50612.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710b] gi|121227143|gb|ABM49661.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei SAVP1] gi|124293279|gb|ABN02548.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10229] gi|126219757|gb|ABN83263.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 668] gi|126227073|gb|ABN90613.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106a] gi|134251029|gb|EBA51108.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 305] gi|147749883|gb|EDK56957.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei FMH] gi|147750136|gb|EDK57207.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei JHU] gi|148027093|gb|EDK85114.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei 2002721280] gi|157807904|gb|EDO85074.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 406e] gi|157939071|gb|EDO94741.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pasteur 52237] gi|169652530|gb|EDS85223.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei S13] gi|184214896|gb|EDU11939.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1655] gi|217396207|gb|EEC36224.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 576] gi|237504649|gb|ACQ96967.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei MSHR346] gi|238524238|gb|EEP87672.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei GB8 horse 4] gi|242137858|gb|EES24260.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1106b] gi|243063456|gb|EES45642.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei PRL-20] gi|254216878|gb|EET06262.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei 1710a] gi|261835045|gb|ABO04812.2| iron-sulfur cluster assembly transcription factor IscR [Burkholderia mallei NCTC 10247] Length = 179 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGACEGSKQPDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139 >gi|241763770|ref|ZP_04761817.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] gi|241366989|gb|EER61385.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] Length = 178 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A IT+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV + Sbjct: 119 VEFLDSVTLQKLVDEQ 134 >gi|169794588|ref|YP_001712381.1| hypothetical protein ABAYE0402 [Acinetobacter baumannii AYE] gi|169147515|emb|CAM85376.1| conserved hypothetical protein [Acinetobacter baumannii AYE] Length = 148 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 121 SLDQYTLGEVLQQPKS 136 >gi|83718552|ref|YP_442404.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis E264] gi|167581325|ref|ZP_02374199.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis TXDOH] gi|167619407|ref|ZP_02388038.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis Bt4] gi|257138606|ref|ZP_05586868.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis E264] gi|83652377|gb|ABC36440.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia thailandensis E264] Length = 179 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGTCEGSKQPDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139 >gi|303249415|ref|ZP_07335637.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302489175|gb|EFL49145.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 150 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ Y +R L A D P IAE I + FL IL L + G V+ RG Sbjct: 1 MPVTQKCQYALRALFELARRKGDGPIPAGGIAERQAIPKRFLEVILHQLRQGGFVDAQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L RPA+ +T+ +V++ + +C DCPL G C V ++A A Sbjct: 61 KEGGFYLARPAETVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGGCVFRDVWQEAQAAL 120 Query: 119 FDVLTQYSIECLVRN 133 V ++ LV Sbjct: 121 EKVYDARNLRDLVEE 135 >gi|15613620|ref|NP_241923.1| hypothetical protein BH1057 [Bacillus halodurans C-125] gi|8480599|sp|Q9RC41|NSRR_BACHD RecName: Full=HTH-type transcriptional regulator nsrR gi|5822814|dbj|BAA83958.1| YHDE [Bacillus halodurans] gi|10173672|dbj|BAB04776.1| BH1057 [Bacillus halodurans C-125] Length = 146 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R+L+Y A+ D + + Q+A IS L K+ L K G++ET++G Sbjct: 1 MQLTSYTDYSLRLLLYLALQPKDKLSSVKQVATIYNISYNHLTKVTYELGKLGLIETIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + ++I I VVK TE++ + ECF C L C L VL +AL A+ Sbjct: 61 RNGGIRLAKAPEEINIGAVVKQTEDNLELVECFNHETNTCILNPVCRLKGVLHEALTAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL QY+++ L+ N ++ + Sbjct: 121 RVLEQYTLKDLLTNEDELQALL 142 >gi|311067422|ref|YP_003972345.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus 1942] gi|310867939|gb|ADP31414.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus 1942] Length = 143 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A H + I QIAE IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLATQHTEDLCNIKQIAETYSISKNHLMKVIYQLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + CGL V +AL A+ Sbjct: 61 RGGGIRLGMAPEDINIGEVVRKTEDDFNIVECFDSGKNLCIISPVCGLKHVFNEALLAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL +Y++ LV+N+ I ++ Sbjct: 121 SVLDKYTLGDLVKNKQDIMRLL 142 >gi|225573651|ref|ZP_03782406.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM 10507] gi|225038990|gb|EEG49236.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM 10507] Length = 134 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y IRV++ A ++ IA+ IS +L I+ L K G + + G Sbjct: 1 MKISTKGRYAIRVMLDLAQQDPKAYTSVASIAQRQEISVKYLEMIISILNKGGYLRSQMG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG +L R A T+ ++++ TE S C + C +C + ++ Sbjct: 61 KKGGYQLARSAQDYTVGEILRLTEGSLAPVSCLECEEEACGRSMTCLTLPMWKELDRRIG 120 Query: 120 DVLTQYSIECLVRN 133 + L ++ L++N Sbjct: 121 EYLDSVTLADLLKN 134 >gi|254251966|ref|ZP_04945284.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158] gi|124894575|gb|EAY68455.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158] Length = 179 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139 >gi|78066902|ref|YP_369671.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|115352215|ref|YP_774054.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172061082|ref|YP_001808734.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|77967647|gb|ABB09027.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] gi|115282203|gb|ABI87720.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria AMMD] gi|171993599|gb|ACB64518.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MC40-6] gi|325523676|gb|EGD01947.1| putative transcriptional regulator protein [Burkholderia sp. TJI49] Length = 179 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139 >gi|307823007|ref|ZP_07653237.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] gi|307735782|gb|EFO06629.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] Length = 151 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +R+L+Y A + I +IAE IS L K+ L G + T RG Sbjct: 1 MQLTQFTDLSLRLLIYLARLPEPGMATIQEIAEYHQISRNHLVKVANSLANQGFIMTTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG++L RPA I + +VV+ TE + + ECF + C L+ +C L + L +A AF Sbjct: 61 KGGGIQLARPAYTIGVGEVVRRTELNMNLVECFDAPTNQCRLIRNCFLKATLYEAQRAFM 120 Query: 120 DVLTQYSIEC 129 VL +Y++ Sbjct: 121 TVLDKYTLAD 130 >gi|154685398|ref|YP_001420559.1| YhdE [Bacillus amyloliquefaciens FZB42] gi|154351249|gb|ABS73328.1| YhdE [Bacillus amyloliquefaciens FZB42] Length = 144 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A H+D + I +IA+ IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+ Sbjct: 61 RGGGIRLGMTPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 VL +Y++ LV+N+ I ++ + Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144 >gi|157828690|ref|YP_001494932.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933410|ref|YP_001650199.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] gi|157801171|gb|ABV76424.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908497|gb|ABY72793.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] Length = 142 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 64/129 (49%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+ Sbjct: 1 MQLTSFTDYGLRSLIYLASTPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 G ++L + + D+++ E + + ECF + C + S +++A AF Sbjct: 61 GGRIKLAFSPSSMNLGDIIEKFEPNMDIVECFNKNTNSCRITNSYQFKHFIKEASEAFIK 120 Query: 121 VLTQYSIEC 129 L Y++E Sbjct: 121 TLNNYTLED 129 >gi|15615687|ref|NP_243991.1| hypothetical protein BH3125 [Bacillus halodurans C-125] gi|10175747|dbj|BAB06844.1| BH3125 [Bacillus halodurans C-125] Length = 142 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + +Y +R L+ A + + ++++ + +L K+L L + + RG+ Sbjct: 1 MKVSSKGEYCLRALIILAKQPERRFTVHELSKHTLVPPPYLEKLLSQLRVLSYITSKRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119 GG +L R A I++ +V++ E C + C L C L + + Sbjct: 61 GGGYQLSRDARDISMGEVIRQLEGPLAPMSCVSVTSYQSCELEQGCLLKPLWGLVRDTVA 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 +VL Q ++ L+ N+ +K+ Sbjct: 121 NVLDQTTLADLIENKLGQRKV 141 >gi|50086222|ref|YP_047732.1| hypothetical protein ACIAD3227 [Acinetobacter sp. ADP1] gi|49532198|emb|CAG69910.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 145 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY + ++ P I+ IA +S+ L KI+ + K G + T RG+ Sbjct: 4 MQLNKFTDYALRILMYVSRPSETPYTIADIANDLRVSQNHLVKIVHFMGKQGWIITTRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L A + + D+V++ + + EC H C L CGL +L +AL F+ Sbjct: 64 GGGLKLNPKALDLKLGDIVRSLQGDHQIVEC---HTPPCVLRSHCGLKGILDQALEQFYQ 120 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L QY ++ ++R + I Sbjct: 121 SLDQYQLKDVLRAPPTYSPI 140 >gi|167756512|ref|ZP_02428639.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402] gi|167702687|gb|EDS17266.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402] Length = 144 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y IRV++ A+H+D + IA+ ++ +L +I+ L KAG ++++RG Sbjct: 1 MKISTKGRYAIRVILDIAMHDDGKYIPLKDIAKRQDLTVKYLEQIISLLNKAGYLQSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + ++ I D+++ TE C +C C + Sbjct: 61 NAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANECITLPFWQGLDKVIK 120 Query: 120 DVLTQYSIECLVRN 133 D + +I+ L+ + Sbjct: 121 DYVESVTIQDLIDH 134 >gi|330817662|ref|YP_004361367.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3] gi|327370055|gb|AEA61411.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3] Length = 179 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAADVTVADIIIAVDEPLDATQC--GGKGTCEGTKQPDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139 >gi|237733110|ref|ZP_04563591.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383792|gb|EEO33883.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 147 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y IRV++ A+H+D + IA+ ++ +L +I+ L KAG ++++RG Sbjct: 4 MKISTKGRYAIRVILDIAMHDDGKYIPLKDIAKRQDLTVKYLEQIISLLNKAGYLQSLRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + ++ I D+++ TE C +C C + Sbjct: 64 NAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANECITLPFWQGLDKVIK 123 Query: 120 DVLTQYSIECLVRN 133 D + +I+ L+ + Sbjct: 124 DYVESVTIQDLIDH 137 >gi|83593363|ref|YP_427115.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576277|gb|ABC22828.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 154 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A H+ P ++ IA+ IS +L ++ L K G+V++VRG Sbjct: 1 MRLSTKGRYAVMAMADLAAHSGGKPVALADIADRQEISLSYLEQLFGRLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A + I D++ A +E C C G C + + N Sbjct: 61 PGGGYLLSREAGDMRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCMTHDLWEELANQI 120 Query: 119 FDVLTQYSIECLVRNR 134 + L+ S+E + + R Sbjct: 121 YLYLSSVSLEDVTQRR 136 >gi|59801064|ref|YP_207776.1| hypothetical protein NGO0637 [Neisseria gonorrhoeae FA 1090] gi|194098839|ref|YP_002001902.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae NCCP11945] gi|239999125|ref|ZP_04719049.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae 35/02] gi|240013967|ref|ZP_04720880.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae DGI18] gi|240016408|ref|ZP_04722948.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae FA6140] gi|240080528|ref|ZP_04725071.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae FA19] gi|240113104|ref|ZP_04727594.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae MS11] gi|240115860|ref|ZP_04729922.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID18] gi|240118158|ref|ZP_04732220.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID1] gi|240121535|ref|ZP_04734497.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID24-1] gi|240123706|ref|ZP_04736662.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae PID332] gi|240125897|ref|ZP_04738783.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae SK-92-679] gi|240128409|ref|ZP_04741070.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae SK-93-1035] gi|254493902|ref|ZP_05107073.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260440325|ref|ZP_05794141.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae DGI2] gi|268594960|ref|ZP_06129127.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268596661|ref|ZP_06130828.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268599189|ref|ZP_06133356.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601536|ref|ZP_06135703.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603874|ref|ZP_06138041.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682338|ref|ZP_06149200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684495|ref|ZP_06151357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686806|ref|ZP_06153668.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043619|ref|ZP_06569335.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|293398928|ref|ZP_06643093.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria gonorrhoeae F62] gi|59717959|gb|AAW89364.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934129|gb|ACF29953.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria gonorrhoeae NCCP11945] gi|226512942|gb|EEH62287.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548349|gb|EEZ43767.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268550449|gb|EEZ45468.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268583320|gb|EEZ47996.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585667|gb|EEZ50343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588005|gb|EEZ52681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622622|gb|EEZ55022.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624779|gb|EEZ57179.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627090|gb|EEZ59490.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012082|gb|EFE04071.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|291610342|gb|EFF39452.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria gonorrhoeae F62] gi|317164418|gb|ADV07959.1| hypothetical protein NGTW08_0991 [Neisseria gonorrhoeae TCDC-NG08107] Length = 148 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P QI I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ +++ Sbjct: 119 DYLGSVTLQSIIEQKNN 135 >gi|107028693|ref|YP_625788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105897857|gb|ABF80815.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia AU 1054] Length = 179 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139 >gi|116690148|ref|YP_835771.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|161524318|ref|YP_001579330.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|170701998|ref|ZP_02892918.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|170733480|ref|YP_001765427.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|189350926|ref|YP_001946554.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198432|ref|ZP_03571478.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2M] gi|221208891|ref|ZP_03581888.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2] gi|221214778|ref|ZP_03587747.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD1] gi|254247783|ref|ZP_04941104.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184] gi|116648237|gb|ABK08878.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia HI2424] gi|124872559|gb|EAY64275.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184] gi|160341747|gb|ABX14833.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans ATCC 17616] gi|169816722|gb|ACA91305.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia MC0-3] gi|170133088|gb|EDT01496.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|189334948|dbj|BAG44018.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221165317|gb|EED97794.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD1] gi|221171174|gb|EEE03624.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2] gi|221182364|gb|EEE14765.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia multivorans CGD2M] Length = 179 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139 >gi|296332358|ref|ZP_06874819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673638|ref|YP_003865310.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii str. W23] gi|296150276|gb|EFG91164.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411882|gb|ADM37001.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis subsp. spizizenii str. W23] Length = 146 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A + I QIAE IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF +K C + CGL VL +AL A+ Sbjct: 61 RGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDVNKNLCVISPVCGLKHVLNEALMAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 VL Y++ LV+N+ I K+ Sbjct: 121 AVLDNYTLRDLVKNKEDIMKLL 142 >gi|315924766|ref|ZP_07920983.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] gi|315621665|gb|EFV01629.1| iron-sulfur cluster assembly transcription regulator IscR [Pseudoramibacter alactolyticus ATCC 23263] Length = 139 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + A H P I +IA+ S+ +L ++ L KAG++ ++RG Sbjct: 1 MKLSTKGQYGVLAMCELASHYGKGPMSIKEIADKQHFSDAYLEQLFSKLKKAGLIRSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + +V+ A E C + +DC SC ++ N+ Sbjct: 61 AHGGYQLTREPSAIVVGEVIDAVEGPIEFCGC-DAEAVDCNRAQSCPTVNLWMDVQNSIR 119 Query: 120 DVLTQYSIECLV 131 V+ S++ L+ Sbjct: 120 SVIDHRSLQDLI 131 >gi|261380293|ref|ZP_05984866.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria subflava NJ9703] gi|284796806|gb|EFC52153.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria subflava NJ9703] Length = 148 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA+QI I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 119 DYLSSVTLQSIIEQKN 134 >gi|317471927|ref|ZP_07931261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|316900593|gb|EFV22573.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 145 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A HN + +++ IS +L +I++ L G ++++RG Sbjct: 1 MKISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L + + TI DV++ TE S C C C + Sbjct: 61 PRGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVR 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L +I+ ++ +R+++K Sbjct: 121 DYLGSVTIQDIL-DRAALK 138 >gi|325272149|ref|ZP_08138580.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51] gi|171362773|dbj|BAG15850.1| probable transcriptional regulator [Pseudomonas putida] gi|324102712|gb|EGC00128.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 163 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVMRRE 134 >gi|300114135|ref|YP_003760710.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540072|gb|ADJ28389.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 166 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+ IS +L ++ L K G+V + RG Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A +I+I+DV+ A +E+ C +C C + + Sbjct: 61 PGGGYRLSREAGKISIIDVITAVDENMDATRCGGLK--NCQENQRCLTHELWEDLSRQIY 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L ++ L++ R I+++ Sbjct: 119 KFLAHITLGELIQ-RDDIQEV 138 >gi|322418655|ref|YP_004197878.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320125042|gb|ADW12602.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 136 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K G+V + RG Sbjct: 2 MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSSRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA IT+ +VV+A E C C G C + + ++ Sbjct: 62 TGGGFVLARPASAITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHLIWKRVQTEVV 119 Query: 120 DVLTQYSIECLVRN 133 D+L +I+ L RN Sbjct: 120 DILDSVTIDTLARN 133 >gi|86148482|ref|ZP_01066771.1| hypothetical protein MED222_02502 [Vibrio sp. MED222] gi|218708942|ref|YP_002416563.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32] gi|85833722|gb|EAQ51891.1| hypothetical protein MED222_02502 [Vibrio sp. MED222] gi|218321961|emb|CAV17962.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32] Length = 147 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T+ TDY +RVL+Y AI+N + I IA + IS+ L KI+Q L G + RG+ Sbjct: 1 MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L QI I +V+ E+ + ECF C + +C L ++ +A F+ Sbjct: 61 NGGLKLSCHPSQINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFYK 119 Query: 121 VLTQYSIECLVRNRSSIK 138 L YS++ L+ S K Sbjct: 120 CLDAYSLQDLLGEGHSYK 137 >gi|261364552|ref|ZP_05977435.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria mucosa ATCC 25996] gi|288567120|gb|EFC88680.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria mucosa ATCC 25996] Length = 148 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P QI I ++ A E+ +C S K +C C + Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCYHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L+ +++ ++ ++S Sbjct: 119 DYLSSVTLQSIIEQKNS 135 >gi|206560561|ref|YP_002231326.1| putative transcriptional regulator protein [Burkholderia cenocepacia J2315] gi|198036603|emb|CAR52500.1| putative transcriptional regulator protein [Burkholderia cenocepacia J2315] Length = 179 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139 >gi|94309969|ref|YP_583179.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353821|gb|ABF07910.1| transcriptional regulator of iron sulfur clusterassembly [Cupriavidus metallidurans CH34] Length = 184 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A+ +T+ D++ A +E +C + G C + Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + + Sbjct: 121 VEYLDSVSLKNLVDQQRARQP 141 >gi|260549846|ref|ZP_05824062.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407096|gb|EEX00573.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 148 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRILMYIARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 64 GGGIRLNPKALDLKLGAIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120 Query: 121 VLTQYSIECLVRNRSS 136 L Q+++ +++ S Sbjct: 121 SLDQHTLGEVLQQPKS 136 >gi|320159424|ref|YP_004172648.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] gi|319993277|dbj|BAJ62048.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] Length = 136 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ DY +R ++Y A + + SQIAE I FL KI+ L AG++ T RG Sbjct: 1 MQITRQADYALRAMVYLARLSPNQRASTSQIAEEQHIPPSFLAKIISQLSIAGLIHTSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGGV L RP ++IT+LDVV+A + + EC + + C C + + Sbjct: 61 ARGGVTLARPPEEITVLDVVEAIDGPIALNECTSPSGV-CMFGEDCPMKPIWCDTQKELI 119 Query: 120 DVLTQYSIEC 129 D L + + Sbjct: 120 DRLRRTTFAQ 129 >gi|71278574|ref|YP_267874.1| Rrf2 family protein [Colwellia psychrerythraea 34H] gi|71144314|gb|AAZ24787.1| Rrf2 family protein [Colwellia psychrerythraea 34H] Length = 168 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ IH P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVTIHAVSGPVSLADISERQGISLSYLEQLFSRLRKEGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R + QI + DV+ A ES +C S K +C C S+ Sbjct: 61 PGGGYRLGRCSAQIAVADVIYAVNESVDATKC--SGKGNCQDGEQCLTHSLWEGLSQRIE 118 Query: 120 DVLTQYSIECLVRN 133 + L ++ LV Sbjct: 119 EFLKNITLSELVAK 132 >gi|87118174|ref|ZP_01074073.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121] gi|86165808|gb|EAQ67074.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121] Length = 147 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R LMY +I + + + ++A S+ K++ L K G V+++RG Sbjct: 1 MRLTAFTDFGLRTLMYLTSIPTEQLSSVPEVARVYGASQNHFVKVIGQLTKLGYVQSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + A+ I I V++ E C K C + C L L A+ AF Sbjct: 61 KNGGIRLAKKAEDINIGKVIRELENHLDAVNC---TKPVCQIASCCELKHALALAMEAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + QYS+ +V N+ + ++ + Sbjct: 118 STMEQYSLADIVHNKPELIPLWQS 141 >gi|293604765|ref|ZP_06687165.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC 43553] gi|292816934|gb|EFF76015.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC 43553] Length = 145 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLM D P I +IA +S L K++ + + G + TVR Sbjct: 1 MQLTRFTDFGLRVLMCLTQCRDRPSPVTIPEIAGRFEVSRNHLVKVVHFMSQRGWISTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + D+++ E+ + +C H+ C L G+C L VL + LNAF Sbjct: 61 GKGGGLRLARDACAYRVGDLIRELEQQGPLIDC---HEPPCALDGACRLAGVLAQTLNAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 +D L Y++ LVR+ ++ Sbjct: 118 YDALNGYTLADLVRDPTA 135 >gi|293610818|ref|ZP_06693118.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827162|gb|EFF85527.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 145 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 1 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL A + +V+ + + EC + C L CGL +L +AL +F+ Sbjct: 61 GGGIRLNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117 Query: 121 VLTQYSIECLVRNRSS 136 L QY++ +++ S Sbjct: 118 SLDQYTLGEVLQQSKS 133 >gi|121999002|ref|YP_001003789.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121590407|gb|ABM62987.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 151 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y + + +IA A IS+ L K++ L + G ++T +GR Sbjct: 1 MELTYYTDYALRVLLYAGAQGERRVPMREIARAYGISQDHLRKVVHRLARHGYLQTTQGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL I + DVV+ E+S + C + CPL G C L L A + F Sbjct: 61 SGGLRLGCAPGAIRVGDVVRLMEDSLELIHC---DRGPCPLCGHCSLKRALNGARDQFIQ 117 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L ++E L+ + + +++ Sbjct: 118 HLDGVTLEELLADPGTAQQL 137 >gi|239815132|ref|YP_002944042.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus S110] gi|319794405|ref|YP_004156045.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus EPS] gi|239801709|gb|ACS18776.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus S110] gi|315596868|gb|ADU37934.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus EPS] Length = 178 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A IT+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYSLGRKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV ++ Sbjct: 119 VEFLDSVTLQKLVDDQ 134 >gi|296114961|ref|ZP_06833606.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769] gi|295978479|gb|EFG85212.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769] Length = 164 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y A+ + I ++A+A +SE + K++ L +AG++ TVRGR Sbjct: 1 MRLTLHTDYALRVLLYVALRPETRVSIREVAQANRVSETHMVKVVHKLGRAGLIRTVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAF 118 GG+ L + A+ I I VV+ TEE + C DC L G C VL AL+AF Sbjct: 61 GGGIELGQAAEDIRIGAVVRLTEEERQLVSCMRPKAEAEDCVLSGFCQFYFVLGTALDAF 120 Query: 119 FDVLTQYSIECLVR---NRSSIKKIF 141 +VL ++++ +++ ++++F Sbjct: 121 MEVLDRWTLADILKMSARDDMMRRLF 146 >gi|317407279|gb|EFV87255.1| hypothetical protein HMPREF0005_05535 [Achromobacter xylosoxidans C54] Length = 145 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY D P I +IA +S L K++ + + G V T R Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIAARFDLSRNHLVKVVHFMSQRGWVSTAR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+ L RPA + D+V+ E+ + +C + C L G+C L+ VL + L AF Sbjct: 61 GKGGGLALARPAADYRLGDLVRELEQQGPLIDC---REPPCALDGACRLSGVLAQTLQAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 ++ L YS+ LVR+ ++ Sbjct: 118 YEALNGYSLADLVRDPTA 135 >gi|311105547|ref|YP_003978400.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8] gi|310760236|gb|ADP15685.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8] Length = 145 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY D P I +IA+ +S L K+ + + G V T R Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIADRFSVSRNHLVKVAHFMAQQGWVSTSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL R A + D+++ E+ + +C + C L GSC L+ VL + L AF Sbjct: 61 GKGGGLRLSRSAGDYRLGDLIRQLEQQGPLIDC---REPPCALDGSCRLSGVLAQTLQAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 ++ L Y++ LVR+ ++ Sbjct: 118 YEALNGYTLADLVRDPTA 135 >gi|238028021|ref|YP_002912252.1| putative transcriptional regulator [Burkholderia glumae BGR1] gi|237877215|gb|ACR29548.1| Predicted transcriptional regulator [Burkholderia glumae BGR1] Length = 178 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L R A +T+ D++ A +E +C K C G C + Sbjct: 61 PGGGYNLARRAGDVTVADIIIAVDEPLDATQC--GGKGTCEGTKQPDGHCMTHELWSTLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139 >gi|114767192|ref|ZP_01446069.1| Transcriptional regulator [Pelagibaca bermudensis HTCC2601] gi|114540662|gb|EAU43732.1| Transcriptional regulator [Roseovarius sp. HTCC2601] Length = 188 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 78/141 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ R+LM CA++ D R ++IA+ C S ++Q L G +E RGR Sbjct: 34 MRLTTRTNLAARILMACAVNPDRRLRTAEIADLCNCSTNHAAHVVQRLHAEGYLEAQRGR 93 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R Q++I V + E AECF + CPLVG+C L S +R+AL AF+ Sbjct: 94 AGGIRLARAVPQVSIGAVFRLFESEIPFAECFDADTNSCPLVGTCRLRSYIRRALEAFYH 153 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L +++ LVR + ++ Sbjct: 154 ELDLVTLDDLVRGNCGLTELL 174 >gi|319638128|ref|ZP_07992891.1| HTH-type transcriptional regulator [Neisseria mucosa C102] gi|317400401|gb|EFV81059.1| HTH-type transcriptional regulator [Neisseria mucosa C102] Length = 148 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA+QI I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 119 DYLSGVTLQSIIEQKN 134 >gi|291532767|emb|CBL05880.1| transcriptional regulator, BadM/Rrf2 family [Megamonas hypermegale ART12/1] Length = 156 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ ++N P + IA IS ++ +I+ L+KA +V++VRG Sbjct: 1 MKVSTKGRYALRTMIDLTVNNTGNPIPLKDIATRQNISLKYMEQIISLLIKAKLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + Q T D+++A E C +C C + Sbjct: 61 NNGGYLLAKSSMQYTAGDILRAAEGDMAPIACIEKDHCNCNRADYCSVLPFWLGLNKVIN 120 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ L R Sbjct: 121 GYLDSVTLSELARQAKE 137 >gi|91788050|ref|YP_549002.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666] gi|91697275|gb|ABE44104.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666] Length = 178 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + N P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQNSGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118 GG L R A +IT+ D++ + +E +C K +C G C + + Sbjct: 61 PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGGRCMTHELWASLNSRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV ++ Sbjct: 119 VEFLDSVTLQKLVDDQ 134 >gi|332528393|ref|ZP_08404387.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella gracilis ATCC 19624] gi|332042156|gb|EGI78488.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella gracilis ATCC 19624] Length = 178 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ ++ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +T+ D++ + +E +C G C + Sbjct: 61 PGGGYTLARKAADVTVADIILSVDEPIDATQCGGKENCQGGDGGRCMTHELWSALNTRMV 120 Query: 120 DVLTQYSIECLVRNR 134 + L +++ LV + Sbjct: 121 EFLDSVTLQKLVDEQ 135 >gi|313894415|ref|ZP_07827980.1| putative HTH-type transcriptional regulator IscR [Veillonella sp. oral taxon 158 str. F0412] gi|313441239|gb|EFR59666.1| putative HTH-type transcriptional regulator IscR [Veillonella sp. oral taxon 158 str. F0412] Length = 138 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L A + + I +IAE S+ +L I+ L AG+V++ RG Sbjct: 1 MKISTKGRYALRILADIAEYGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + + +++ A E+S + C CP+ C + + + F Sbjct: 61 KYGGYRLVKLPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120 Query: 120 DVLTQYSIECLVRNR 134 V+ + S++ ++ ++ Sbjct: 121 HVMERVSLQDVMDHK 135 >gi|145300994|ref|YP_001143835.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853766|gb|ABO92087.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida subsp. salmonicida A449] Length = 150 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + DVV E +C + +C L G C + +LR+A+NAF Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 +VL +Y++ VR+ + + + Sbjct: 118 EVLGEYTLADAVRDPTRLCHLLG 140 >gi|117619511|ref|YP_854778.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560918|gb|ABK37866.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 150 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + DVV E +C + +C L G C + +LR+A+NAF Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 +VL +Y++ VR+ + + + Sbjct: 118 EVLGEYTLADAVRDPTRLCHLLG 140 >gi|283852223|ref|ZP_06369496.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283572449|gb|EFC20436.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 145 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG+R+L+ A+H + P RI IA+ IS +L ++++ L KAG + + RG Sbjct: 1 MQLTTRSRYGLRMLIDIALHGSERPVRIQDIAKRRNISVKYLEQLIRALKKAGFIHSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I + DVV+A E + EC + C + C + +A + F Sbjct: 61 PKGGHILAMAPEDIRVGDVVRALEVRPELTECVGNPDA-CLIASDCVTRQIWARATASLF 119 Query: 120 DVLTQYSIECLV 131 L + L+ Sbjct: 120 KELDAIHVSDLL 131 >gi|104780228|ref|YP_606726.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas entomophila L48] gi|95109215|emb|CAK13912.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas entomophila L48] Length = 163 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R + I + V+ A ES C DC +C + Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVMRRE 134 >gi|323698961|ref|ZP_08110873.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. ND132] gi|323458893|gb|EGB14758.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans ND132] Length = 147 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT R+ YG R+L+ A+H N P A+ +S +L K+++ L +AG V+ R Sbjct: 1 MKLTTRSRYGTRLLLDIALHSENGSPVPSKDTADREGLSLKYLEKLIKMLKQAGYVKGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R + I+I +V + + V C CP C S+ A A Sbjct: 61 GPNGGNVLVRAPEDISIGEVARILDGEEQVLGC-EGDPSTCPRAAVCLKRSIWDDASLAM 119 Query: 119 FDVLTQYSIECLVRN 133 + +L YS+ L+++ Sbjct: 120 YRMLDSYSLADLMKD 134 >gi|17545737|ref|NP_519139.1| hypothetical protein RSc1018 [Ralstonia solanacearum GMI1000] gi|17428031|emb|CAD14720.1| putative of unknown function upf0074; transcription regulator protein [Ralstonia solanacearum GMI1000] gi|299066983|emb|CBJ38178.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum CMR15] Length = 193 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116 GG L R AD +T+ D++ A +E +C K +C G C + Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQ 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 119 KMVEYLDSVSLQNLVDQQRERQP 141 >gi|302335472|ref|YP_003800679.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] gi|301319312|gb|ADK67799.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] Length = 141 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + + Y +RV+ A H + + +++ IS +L +++ + KAG VE++RG+ G Sbjct: 5 FSTKGRYALRVMGDLATHEGW-VSLGDVSKRQGISRKYLEQVVSRMHKAGYVESLRGKGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121 G RL R + T+ ++++A E S C + CP SC ++ R Sbjct: 64 GYRLTRAPEDYTLGEILRAAEGSLAPVACLDCTNDEICPQADSCPTVTIWRDLGRVTAGF 123 Query: 122 LTQYSIECLVRN 133 L ++ +V + Sbjct: 124 LDSRTLADIVGD 135 >gi|90417479|ref|ZP_01225402.1| rrf2 family protein [marine gamma proteobacterium HTCC2207] gi|90330720|gb|EAS45999.1| rrf2 family protein [marine gamma proteobacterium HTCC2207] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ IH +D P +S+I++ IS +L ++ L +A +V +VRG Sbjct: 1 MKLTTKGRYAVTAMLDLTIHCDDKPVSLSEISQRQSISLSYLEQLFSKLRQAELVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R ++ + I +++ A ES C K DC C S+ + + Sbjct: 61 PGGGYRLGRSSETVFIAEIIDAVNESVDSTNC--QGKGDCQGGEICLTHSLWDQLSHEIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L S+ LV R Sbjct: 119 NFLNAISLADLVARRD 134 >gi|241760101|ref|ZP_04758199.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria flavescens SK114] gi|241319555|gb|EER55985.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria flavescens SK114] Length = 148 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA+QI I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCNHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 119 DYLSSVTLQSIIEQKN 134 >gi|221066571|ref|ZP_03542676.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] gi|264678869|ref|YP_003278776.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Comamonas testosteroni CNB-2] gi|299532420|ref|ZP_07045812.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] gi|220711594|gb|EED66962.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni KF-1] gi|262209382|gb|ACY33480.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni CNB-2] gi|298719658|gb|EFI60623.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas testosteroni S44] Length = 178 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A IT+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYTLARKATDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWAALNQRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV + Sbjct: 119 VEFLDSVTLQKLVDEQ 134 >gi|113867177|ref|YP_725666.1| transcriptional regulator of iron sulfur clusterassembly (IscR) [Ralstonia eutropha H16] gi|113525953|emb|CAJ92298.1| transcriptional regulator of iron sulfur clusterassembly (IscR) [Ralstonia eutropha H16] Length = 184 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A+ +T+ D++ A +E +C + G C + Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 121 VEYLDSVSLKNLVDQQRERQP 141 >gi|70732290|ref|YP_262046.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens Pf-5] gi|68346589|gb|AAY94195.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas fluorescens Pf-5] Length = 163 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + V+ A ES +C DC +C + Sbjct: 61 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 118 Query: 120 DVLTQYSIECLVRNRS 135 + L+ S+ LV R Sbjct: 119 EFLSGISLADLVTRRE 134 >gi|194289262|ref|YP_002005169.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223097|emb|CAQ69102.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG 19424] Length = 183 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A+ +T+ D++ A +E +C + G C + Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 121 VEYLDSVSLKNLVDQQRERQP 141 >gi|171320031|ref|ZP_02909102.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] gi|171094724|gb|EDT39767.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] Length = 179 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139 >gi|160899434|ref|YP_001565016.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365018|gb|ABX36631.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans SPH-1] Length = 178 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A IT+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWAALNQRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV + Sbjct: 119 VEFLDSVTLQKLVDEQ 134 >gi|260433137|ref|ZP_05787108.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260416965|gb|EEX10224.1| putative transcriptional regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 142 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 68/129 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R+LM A + +++AE +S L K++ L +AG +ET RG Sbjct: 1 MRLTTFTDFGLRILMRMAGAPERAFSTAELAEEFQVSRAHLAKVISALARAGYLETRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +QI + DVV E + ECFA+ C L SC L L++A F + Sbjct: 61 GGGAMLARPPEQIRLGDVVGLLESGQAIVECFAADGSACTLSPSCLLKERLKRAEAVFLE 120 Query: 121 VLTQYSIEC 129 L + ++ Sbjct: 121 DLNRSTLAD 129 >gi|114565174|ref|YP_752688.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella frigidimarina NCIMB 400] gi|114336467|gb|ABI73849.1| transcriptional regulator, BadM/Rrf2 family [Shewanella frigidimarina NCIMB 400] Length = 151 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+GIR+LMY A+ ++ N RI+++ +S + KI+ L K G ++TVR Sbjct: 1 MQLTRYTDFGIRILMYLAVQSERENLFRIAEVTSVFDLSSNHVAKIIHQLGKMGYLQTVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG RL + AD++ I +V+ E S +C C C L VL +A+ A+ Sbjct: 61 GKSGGFRLAKAADEVLIGQLVRDLEHSLSPIDC---ESPYCRFTPICRLKGVLGQAVTAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 VL QY++ +V N+S I Sbjct: 118 LAVLDQYTLADIVSNKSDI 136 >gi|226946079|ref|YP_002801152.1| Iron-sulfur cluster assembly transcription factor IscR [Azotobacter vinelandii DJ] gi|6137265|sp|O69219|YOR2_AZOVI RecName: Full=Putative HTH-type transcriptional regulator ORF2 gi|3046321|gb|AAC24480.1| unknown [Azotobacter vinelandii] gi|226721006|gb|ACO80177.1| Iron-sulphur cluster assembly transcription factor IscR [Azotobacter vinelandii DJ] Length = 164 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRNSLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R I + +V+ A ES V C C C + + Sbjct: 61 PGGGYQLSRSMAAIQVAEVIDAVNESVDVTRCQGDRG--CRSGEVCLTHYLWCDLSHQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L+ S+ LV RS ++ + Sbjct: 119 EFLSGISLADLVA-RSDVQDL 138 >gi|317491645|ref|ZP_07950081.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921192|gb|EFV42515.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA] Length = 144 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD+G+R LMY A + + +IA IS + K++ LV G + VRG Sbjct: 1 MKLTTYTDFGLRALMYLASMPYGQRTSVGEIAGHYDISRNHMVKVVAQLVGLGYIHAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L +PA I I V++A E + +C H C L+ C L + L+ + AF Sbjct: 61 KGGGIELGKPAADINIGQVIRALESNLNGIDC---HSPGCKLIKICQLQAALKVGMEAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 + Y++ LV NR I I Sbjct: 118 TAMENYTLADLVSNRGEIIAILG 140 >gi|206900600|ref|YP_002250996.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] gi|206739703|gb|ACI18761.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] Length = 138 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ R+ YG+R L+Y A + D P + +IAEA I +L +I++ L + V Sbjct: 1 MKLSTRSRYGLRALIYIAKNQKEDSPVSVRKIAEAEEIPLRYLERIMRILSQKNYVRAEV 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + I ILDVV+A E + +C H + C + SC + + + Sbjct: 61 GAEGGYYLNISPENIRILDVVEALEGRINLVDCL--HGVKCKRMPSCPTRPLWIEMTKSL 118 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + L +Y++ ++ IK Sbjct: 119 KETLAKYTLADFLKEEEKIK 138 >gi|92114964|ref|YP_574892.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798054|gb|ABE60193.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H D P ++ I++ IS +L ++ L +A +V++VRG Sbjct: 18 MRLTTKGRYAVTAMLDLALHADAGPISLADISKRQAISLSYLEQLFARLKRAALVKSVRG 77 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A+ I++ V+ A +ES C DC +C + + Sbjct: 78 PGGGYLLAHGANAISVASVIGAVDESVDATRCQGL--SDCQQGDTCLTHHLWCDLSDKIH 135 Query: 120 DVLTQYSIECLVRNRS 135 L ++ LV + Sbjct: 136 GFLDAITLAELVERQE 151 >gi|329115699|ref|ZP_08244418.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] gi|326694969|gb|EGE46691.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] Length = 155 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R L++ D + I +IAE ISE + K++ L K G +ET+RGR Sbjct: 6 MKLNLQTDYALRALIFLGSRTDRLSSIREIAETYRISETHMVKVIHRLGKGGFIETLRGR 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG+RL R A+ I I VV EE + +C + + C L+ SC L VL + + Sbjct: 66 NGGIRLGRLAETIRIGAVVSYMEEDMSLLDCLSHKTCEREGTCILMPSCRLRGVLSETMQ 125 Query: 117 AFFDVLTQYSIECLV 131 A VL +Y++ ++ Sbjct: 126 AMMSVLDRYTLADMI 140 >gi|134296308|ref|YP_001120043.1| BadM/Rrf2 family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139465|gb|ABO55208.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia vietnamiensis G4] Length = 179 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R A +T+ D++ A +E +C D G C + Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGACDGSKQPDGHCMTHELWSTLNQK 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139 >gi|222055720|ref|YP_002538082.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221565009|gb|ACM20981.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 137 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A + IS+IA A + + FL KI Q K GI+ + RG Sbjct: 2 MELTRKGEYAIRGIIYLAQQSPGKVSLISEIALATDVPQTFLAKIFQSFAKLGIINSSRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA IT+ VV+A E C C G C + +V R + Sbjct: 62 TGGGFVLGRPASSITLRQVVEAVEGPIIPNRCLMDSGA-CDRGGYCNVHNVWRTVQSNVI 120 Query: 120 DVLTQYSIECLVRNRSS 136 +L +IE L + R+S Sbjct: 121 GILDSVTIEELAKPRAS 137 >gi|297539149|ref|YP_003674918.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301] gi|297258496|gb|ADI30341.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301] Length = 176 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 18/156 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHND----------------YPNRISQIAEACCISELFLFKI 44 M LT + + + ++ A+H P ++ I+E IS +L ++ Sbjct: 1 MKLTTKGRFAVTAMLDLALHEALANSESKLAGSELNEIKPVTLAGISERQSISLSYLEQL 60 Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 L + G+V +VRG GG +L + I++ +++ A +E C +C G Sbjct: 61 FSRLRRQGLVNSVRGPGGGYKLAKNYADISVAEIINAVDEQIDATHCGGQE--NCKDEGR 118 Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 C + D L S+ +V +++S KK+ Sbjct: 119 CMTHDLWSTLNTKILDYLAGVSLADMVASQTSDKKV 154 >gi|71907577|ref|YP_285164.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica RCB] gi|71847198|gb|AAZ46694.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas aromatica RCB] Length = 167 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + +M A+ D P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMMDLALRGDDGPVALASISERQKISLSYLEQLFGKLRRYKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + RP + + + D+++A +E +C +C C + F Sbjct: 61 PGGGYCIARPLELVRVADIIRAVDEQLDATQCGGRE--NCHDEHRCMTHDLWTTLNVKMF 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L+ ++ LV + Sbjct: 119 DYLSSVTLADLVERERQKR 137 >gi|297624030|ref|YP_003705464.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165210|gb|ADI14921.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix DSM 17093] Length = 149 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R YG+R L+ A+ + + ++E IS+ +L +I+ L +AGIVE+VRG Sbjct: 1 MWISTRAQYGMRALVEIALSGET-TSLKVVSERQGISQHYLEQIVAVLRRAGIVESVRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R+ RP ++T L+VV+ E S C C G+C S+ + A + Sbjct: 60 YGGYRMARPMHEVTALEVVELMEGSLAPVACIEDEAC-CEYTGNCSTQSLWERVDRAVRE 118 Query: 121 VLTQYSIECLVRNRSSIK 138 VL +I LV R ++ Sbjct: 119 VLGSTTIGDLVAERQLLQ 136 >gi|223928089|gb|ACN23804.1| iron-sulfur cluster regulator [Clostridium sp. enrichment culture clone 7-14] Length = 153 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + + +A+ ISE +L I++ LVKA ++ +RG Sbjct: 11 MLISTKGRYALRVMVDLAEHRTEGYIPLKAVAQRQDISEKYLESIIKLLVKAKLLNGLRG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + + T+ +++ TEES C CP + C S+ + Sbjct: 71 KGGGYQLTKAPELYTVGSILRLTEESLAPVSCLEPGAASCPRMAECRTLSLWQGLDRVIS 130 Query: 120 DVLTQYSIECLVRN 133 D L ++ LV++ Sbjct: 131 DYLDNITVADLVKS 144 >gi|205374225|ref|ZP_03227024.1| transcriptional regulator [Bacillus coahuilensis m4-4] Length = 139 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA +SE +L +++ PL AG+V ++RG Sbjct: 1 MKISTKGRYGLTIMIELAKRHGEGPTSLKTIATTHELSEHYLEQLIAPLRNAGLVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT D+++ E E + + +K +A Sbjct: 61 AYGGYVLAMEPKEITAGDIIRVLEGPISPVEGIEDEEP--------AKRELWKKIRDAVK 112 Query: 120 DVLTQYSIECLV 131 DVL +IE L Sbjct: 113 DVLDNTTIEDLA 124 >gi|113460426|ref|YP_718488.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus 129PT] gi|112822469|gb|ABI24558.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus 129PT] Length = 135 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +QI+I V+ A E+ V +C + DC C S+ + Sbjct: 61 PGGGYQLGLSTEQISIGMVINAVNENINVTKCLGNG--DCQGGVKCLTHSLWEELSVRIE 118 Query: 120 DVLTQYSIECLVRNRSS 136 + L + +I LV ++ Sbjct: 119 NFLNEITIAELVAKQAK 135 >gi|225076501|ref|ZP_03719700.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens NRL30031/H210] gi|224952180|gb|EEG33389.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens NRL30031/H210] Length = 148 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA+QI I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCNHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 119 DYLSGVTLQSIIEQKN 134 >gi|40063431|gb|AAR38242.1| rrf2 family protein [uncultured marine bacterium 580] Length = 159 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P ++S+I++ IS +L ++ L K G+V++VRG Sbjct: 1 MKLTTKGRFAVTAMLDLALNEKNMPIKLSEISQRQSISLSYLEQLFGKLRKQGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + D I++ +++ + +E +C K +C C ++ + Sbjct: 61 PGGGYLVAKNHDNISVKNIISSVDEQIDATQC--GGKENCNEGHQCITHNLWTTLNSKIL 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ LV+ + + Sbjct: 119 DYLESTTLDELVKTQRN 135 >gi|73540759|ref|YP_295279.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118172|gb|AAZ60435.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha JMP134] Length = 186 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R A+ +T+ D++ A +E +C + G C + Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + + Sbjct: 121 VEYLDSVSLKNLVDQQRAKQP 141 >gi|121609329|ref|YP_997136.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121553969|gb|ABM58118.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter eiseniae EF01-2] Length = 179 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ N P ++ I++ IS +L ++ L + GIVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRNGIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 GG L R AD T+ D++ + +E +C K +C G C + Sbjct: 61 PGGGYTLARRADDTTVADIIVSVDEPMDATQC--GGKENCLGEAGRCMTHELWTALNQHM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV + Sbjct: 119 KEFLEAVTLQQLVDEQ 134 >gi|182413876|ref|YP_001818942.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1] gi|177841090|gb|ACB75342.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae PB90-1] Length = 200 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+K+ +Y +R L+ I + ++S++A+ + FL +I+Q L G V +V Sbjct: 1 MKLSKKGEYALRSLINLGIAAEMGRKLVQVSELADYEQLPVKFLEQIMQALKDEGFVVSV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKA 114 RG+ GG RL +PA QI I VV+ + C + CP CGL ++ Sbjct: 61 RGKFGGYRLAKPAKQILIGQVVRLIDGPLAPIGCVSQTAYVPCTCPDETHCGLRMLMLDV 120 Query: 115 LNAFFDVLTQYSIECLVR 132 NA ++L +YS+ +V Sbjct: 121 RNAIANILDRYSLADVVE 138 >gi|170717785|ref|YP_001783506.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus 2336] gi|168825914|gb|ACA31285.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus 2336] Length = 135 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG Sbjct: 1 MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L DQI+I V+ A E+ V +C + DC C S+ + Sbjct: 61 PGGGYQLGLSTDQISIGMVINAVNENINVTKCLGNG--DCQGGVKCLTHSLWEELSVRIE 118 Query: 120 DVLTQYSIECLVRNRSS 136 + L + +I LV ++ Sbjct: 119 NFLNEITIAELVAKQAK 135 >gi|253701613|ref|YP_003022802.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251776463|gb|ACT19044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 136 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K G+V + RG Sbjct: 2 MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVSSSRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA QIT+ +VV+A E C C G C + V ++ Sbjct: 62 TGGGFVLGRPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTEVV 119 Query: 120 DVLTQYSIECLVRNRSS 136 +L +I+ L R+ Sbjct: 120 HILDGVTIDLLARSPEQ 136 >gi|258404994|ref|YP_003197736.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] gi|257797221|gb|ACV68158.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] Length = 153 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R+ YG+ +L AIH + P IS+IA +S + KI++ L + G + + G Sbjct: 1 MKFSTRSRYGLHLLRDIAIHAESGPVSISEIASRHSMSLKYTEKIIRQLRQGGWLSSTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L R A + + ++V+ E+S + +C + CP G C S+ ++AL A + Sbjct: 61 ARGGYQLTRQASAMPLGEIVRYLEDSPLLLDC-QKLRPGCPRCGVCLTRSLWQEALEAMY 119 Query: 120 DVLTQYSIECLVRN 133 L +++ LVR+ Sbjct: 120 AKLDSFTLADLVRD 133 >gi|19223865|gb|AAL86367.1|AF332574_4 putative RRF2 protein [Desulfovibrio gigas] Length = 150 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ YG R+++ A+H+ P RIS I++ +S +L K+++PL +AG +++ RG Sbjct: 1 MKLSTRSRYGTRMVLDIAMHSQAGPVRISDISKRQGVSVKYLEKLIRPLKQAGFIKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L ++I + VV+A E + EC + CP+ G C V +A A Sbjct: 61 PRGGHVLSDLPERIAVGAVVRAMEGEMALTECAKDASV-CPISGDCLTRKVWIEATRAML 119 Query: 120 DVLTQYSIECLVRNRS 135 D L + L+R Sbjct: 120 DRLDAITFLDLMREAE 135 >gi|256828389|ref|YP_003157117.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577565|gb|ACU88701.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium baculatum DSM 4028] Length = 138 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+L+ A++ D + IA IS+ ++ K++ L + G++E+ RG Sbjct: 1 MRLTTRSRYGTRLLLDIALNQDRGWVNTTDIARRQKISQKYIEKLITGLRRGGLIESKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNA 117 GG +L +PA IT+ DVV++ EE + +C +C L G C V +A N Sbjct: 61 PFGGHKLAKPAMDITVGDVVRSLEEKVALTQCAEGEPICGECSLAGECVTQFVWIEASNV 120 Query: 118 FFDVLTQYSIECLVRNR 134 L Y + LV + Sbjct: 121 LMQTLDSYRLGELVARK 137 >gi|145589675|ref|YP_001156272.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048081|gb|ABP34708.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 189 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I++ IS +L ++ L + IVE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALRETHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115 GG L RP++++++ D++ A +E +C K +C G C + Sbjct: 61 PGGGYTLARPSNEVSVADIIVAVDEPLDATQC--GGKGNCHSEEDTHGRCMTHDLWSNLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + + L+ S++ LV+ + Sbjct: 119 SKMVEYLSSVSLKDLVQQQEG 139 >gi|83859025|ref|ZP_00952546.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii HTCC2633] gi|83852472|gb|EAP90325.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii HTCC2633] Length = 152 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 77/141 (54%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT +++ +R+L + A+H R +A A IS L K + L K G ++ VRGR Sbjct: 7 RLTNFSNFALRLLQFAALHAPNLIRTEDVARAHGISRHHLLKAVNTLEKEGFIKAVRGRN 66 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG+ L RPA+ +T+ +V++ TE + ECF + CPL+G C L++ ++ A AF V Sbjct: 67 GGITLNRPAEDVTVGEVIRITEAPLELVECFNAETNTCPLIGVCHLSASIQTATRAFLAV 126 Query: 122 LTQYSIECLVRNRSSIKKIFN 142 L +I + NRS + N Sbjct: 127 LDDVTIADIAANRSVLLSRLN 147 >gi|171463236|ref|YP_001797349.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192774|gb|ACB43735.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 189 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I++ IS +L ++ L + IVE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALREAHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP----LVGSCGLTSVLRKAL 115 GG L RP+ ++++ D++ A +ES +C K +C G C + Sbjct: 61 PGGGYTLARPSSEVSVADIIVAVDESLDATQC--GGKGNCHTDEENHGRCMTHDLWSNLN 118 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + + L+ S++ LV+ + Sbjct: 119 SKMVEYLSSVSLKDLVQQQEG 139 >gi|241662560|ref|YP_002980920.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12D] gi|309781143|ref|ZP_07675880.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia sp. 5_7_47FAA] gi|240864587|gb|ACS62248.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12D] gi|308919964|gb|EFP65624.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia sp. 5_7_47FAA] Length = 197 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L R AD +T+ D++ A +E +C G C + Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHVGGHTGRCMTHDLWATL 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 121 NQKMVEYLDSVSLQNLVDQQRERQP 145 >gi|298530491|ref|ZP_07017893.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] gi|298509865|gb|EFI33769.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] Length = 143 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ YG R+++ A HN+ P RI IA+ ISE +L KI++ L KAG+V+ +RG Sbjct: 1 MKLSTTIRYGTRLMLDMAEHNETGPIRIKTIAQRQGISEKYLEKIVRLLRKAGLVDGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P ++IT+ +++A + + C + C C V A Sbjct: 61 PGGGYVLAVPPEKITMGAILEAVQGRIELCPCLGEPE-HCEKHMYCKTRMVWNDINAAVS 119 Query: 120 DVLTQYSIECL 130 L ++ L Sbjct: 120 SRLHSITLADL 130 >gi|317122069|ref|YP_004102072.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermaerobacter marianensis DSM 12885] gi|315592049|gb|ADU51345.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter marianensis DSM 12885] Length = 141 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + A P + ++AEA + E +L +++ PL K G+V++VRG Sbjct: 1 MQLSTRGRYGVRAMFELARRYGQGPVPLREVAEAQQLPENYLEQLMAPLRKGGLVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R QIT+ D+V+ + P V V A Sbjct: 61 AQGGYVLARSPRQITVADIVRLLDGPIGPET--DQEATGTPSVAD----PVWEAVRQAIT 114 Query: 120 DVLTQYSIECLVRNRSSIKK 139 DVL +++ LVR ++ Sbjct: 115 DVLEGTTLDDLVRQAEERQR 134 >gi|124267450|ref|YP_001021454.1| BadM/Rrf2 family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260225|gb|ABM95219.1| transcriptional regulator, BadM/Rrf2 family [Methylibium petroleiphilum PM1] Length = 177 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I+ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALREHSGPVALAAISSRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A++IT+ D++ A +E C G C + Sbjct: 61 PGGGYSLGRKAEEITVADIIVAVDEPIDATGCGGKENCMGEDSGRCMTHDLWASLNTKMI 120 Query: 120 DVLTQYSIECLVRNR 134 + L S+ LV ++ Sbjct: 121 EFLDSISLRKLVDDQ 135 >gi|238022335|ref|ZP_04602761.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147] gi|237866949|gb|EEP67991.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147] Length = 148 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE+VRG Sbjct: 1 MRLTTKGRFAVTAMVDLAMNAQNNAVKLNAISERQKISLSYLEQLFSKLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +PA QI I ++ A E+ +C S K DC C ++ + Sbjct: 61 PGGGYVLGKPAGQINIAQIITAAEDRLDATQC--SGKADCHGGAPCITHNLWESLNHTIH 118 Query: 120 DVLTQYSIECLVRN 133 + L+ ++ L+ Sbjct: 119 NHLSSVTLAHLIAQ 132 >gi|330992600|ref|ZP_08316548.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329760799|gb|EGG77295.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 137 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IRVL+Y A + + + +I+++ IS L K++ L AG+V RGR Sbjct: 1 MRLTLHTDYAIRVLVYLARNPERRVSVHEISDSHGISHNHLVKVVNRLSHAGVVVARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG++L +I I D+V+ E V C + C L C L +L +++ AF Sbjct: 61 SGGLQLPCLPHEIVIGDIVRLMETDMDSVVACQPENGQHCLLADICRLRHLLAQSMRAFL 120 Query: 120 DVLTQYSIECLVRNRSS 136 VL + ++ ++ +R + Sbjct: 121 KVLDETTLNDILPDRRA 137 >gi|311069236|ref|YP_003974159.1| transcriptional regulator of cysteine biosynthesis [Bacillus atrophaeus 1942] gi|310869753|gb|ADP33228.1| transcriptional regulator of cysteine biosynthesis [Bacillus atrophaeus 1942] Length = 138 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H D P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGDGPTSLKTIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + IT D+++ E E + + + +A Sbjct: 61 AYGGYVLGSEPETITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112 Query: 120 DVLTQYSIECLV 131 +VL ++E L Sbjct: 113 EVLDNTTLEDLA 124 >gi|288958849|ref|YP_003449190.1| HTH-type transcriptional regulator [Azospirillum sp. B510] gi|288911157|dbj|BAI72646.1| HTH-type transcriptional regulator [Azospirillum sp. B510] Length = 158 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A P ++ IAE IS +L ++ L K G+V++VRG Sbjct: 1 MRLSTKGRYAVMAMVDLAATSQGSPVALADIAERQEISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118 GG L PAD + D++ A +E C C C + + N Sbjct: 61 PGGGYLLAHPADATRVSDIILAVDEPIRTTRCANGTPQGCRTNRSRCLTHDLWEELGNQI 120 Query: 119 FDVLTQYSIECLVRNR 134 L+ ++ +V R Sbjct: 121 HMYLSSVTVADVVERR 136 >gi|118581140|ref|YP_902390.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503850|gb|ABL00333.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus DSM 2379] Length = 158 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ YG+R L A + P +I I+ IS +L +I Q L +AGI+++ RG Sbjct: 1 MRLTTKSRYGLRALFDIAYNCGTAPAQIQDISRRQDISPRYLEQIFQNLKRAGILKSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------IDCPLVGSCGLTSVLRK 113 +GG L R D+ITIL+++ ATE+ + EC + + +C GSC +V + Sbjct: 61 PQGGYFLARSPDKITILEILNATEQDVLLVECAGATEKKSKRTGECAQEGSCVTQTVWEE 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A ++ + +++ L ++ Sbjct: 121 ASALLGELFSGITLQTLCERGQAM 144 >gi|187927978|ref|YP_001898465.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii 12J] gi|187724868|gb|ACD26033.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii 12J] Length = 197 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L R AD +T+ D++ A +E +C G C + Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHVGGHTGRCMTHDLWATL 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 121 NQKMVEYLDSVSLQNLVDQQRERQP 145 >gi|317405206|gb|EFV85545.1| DNA-binding protein [Achromobacter xylosoxidans C54] Length = 180 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C + Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 D L S++ LV ++ ++++ A Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146 >gi|157693157|ref|YP_001487619.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157681915|gb|ABV63059.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 139 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL A +V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E E + + + + +A Sbjct: 61 AYGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEEP--------AKRELWIRIRDAVK 112 Query: 120 DVLTQYSIECLV 131 DVL ++E L Sbjct: 113 DVLDNTTLEDLA 124 >gi|121605191|ref|YP_982520.1| BadM/Rrf2 family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594160|gb|ABM37599.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas naphthalenivorans CJ2] Length = 178 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + N+ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 GG L R A +IT+ D++ + +E +C K +C GS C + + Sbjct: 61 PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGSRCMTHDLWSSLNSRM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L S++ LV ++ Sbjct: 119 VEFLDSVSLQKLVDDQ 134 >gi|187478009|ref|YP_786033.1| DNA-binding protein [Bordetella avium 197N] gi|115422595|emb|CAJ49120.1| putative DNA-binding protein [Bordetella avium 197N] Length = 177 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C + Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 D L S++ LV ++ ++++ A Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRLRQLQEA 146 >gi|103486029|ref|YP_615590.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976106|gb|ABF52257.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis alaskensis RB2256] Length = 143 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 1/143 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ +DY +R+LM A + + +IA IS L K+ Q L G V RGR Sbjct: 1 MRLSLHSDYALRILMALAATGEQ-MSVDEIASHYGISRNHLAKVAQRLQALGYVSAQRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R ++ VV+ E + EC CP+ G CGL L AL AF Sbjct: 60 GGGLTLARAPSEVIAGTVVREFENLGGLVECMDPATSTCPVRGGCGLQGALGGALAAFLA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L +Y++ L+ + + + A Sbjct: 120 HLDRYTLADLLPQPARFRALLGA 142 >gi|149201796|ref|ZP_01878770.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035] gi|149144844|gb|EDM32873.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035] Length = 156 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TDY +RVL+Y A + I + A+ IS L K++ L+ G +E +RG Sbjct: 1 MRLTKFTDYSLRVLLYAATLKPGELTTIEETAKLYDISRAHLKKVVLQLIHEGFLEGIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL R +I + VV+ E F +AECF+ C + C L VL AL F Sbjct: 61 RSGGFRLARSPGEINLGQVVRKMEPEFALAECFSPDNA-CRVTKGCRLPIVLNLALTNFL 119 Query: 120 DVLTQYSIECLV 131 + +++ L Sbjct: 120 NTFDDFTLADLA 131 >gi|85705587|ref|ZP_01036685.1| Putative transcriptional regulator [Roseovarius sp. 217] gi|85670012|gb|EAQ24875.1| Putative transcriptional regulator [Roseovarius sp. 217] Length = 138 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 73/135 (54%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R+LM A + +++A+ +S L KI+Q L + G++ET RG Sbjct: 1 MRLTSFTDYGLRMLMRMASEPERAYSSAELADEFGLSRNHLAKIMQRLSRGGLIETRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +PA ++ + +V+ EE + ECFA+ DC + G C L + LR A AF Sbjct: 61 GGGAVLAKPASELRLGAIVRLLEEGQPLVECFAADSGDCSIDGQCRLKARLRSAEAAFLA 120 Query: 121 VLTQYSIECLVRNRS 135 L ++ + N + Sbjct: 121 DLEGSTLAAIALNPA 135 >gi|293606133|ref|ZP_06688498.1| iron-sulfur cluster assembly transcription factor IscR [Achromobacter piechaudii ATCC 43553] gi|292815588|gb|EFF74704.1| iron-sulfur cluster assembly transcription factor IscR [Achromobacter piechaudii ATCC 43553] Length = 180 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C + Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 D L S++ LV ++ ++++ A Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146 >gi|118594588|ref|ZP_01551935.1| hypothetical protein MB2181_02930 [Methylophilales bacterium HTCC2181] gi|118440366|gb|EAV46993.1| hypothetical protein MB2181_02930 [Methylophilales bacterium HTCC2181] Length = 157 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H D P ++ I+ IS +L ++ + + G+V++VRG Sbjct: 1 MKLTTKGRFAVTAMLDLAMHETDSPVTLTAISARQSISLSYLEQLFSQMRRKGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + IT+ ++V A +E +C S +C G C + Sbjct: 61 PGGGYLSAQNHKDITVKNIVTAVDEKLDSTQCGGSE--NCHEGGRCITHDLWVSLNTKVL 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L S++ L+ + K Sbjct: 119 DYLDGLSLQDLIDGQKDRNK 138 >gi|197304012|ref|ZP_03169044.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC 29176] gi|197296980|gb|EDY31548.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC 29176] Length = 136 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ A + + +IA ISE +L IL+ LV G++ +RG Sbjct: 1 MIISTRGRYALRVMIDLAGQDPNTYTPLKEIAARQEISEKYLENILKSLVTGGLIFGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + + TI +++ TE S C + +C C + +K Sbjct: 61 KGGGYKLTKKPEDYTISSILRLTEGSLAPVACLEENATECEREAVCPTRPLWKKLDTLIQ 120 Query: 120 DVLTQYSIECLVR 132 D L S++ L+ Sbjct: 121 DYLGSVSLKDLID 133 >gi|89900960|ref|YP_523431.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345697|gb|ABD69900.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 178 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + ++ P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 GG L R +IT+ +++ + +E C K +C G+ C + Sbjct: 61 PGGGYTLARNPAEITVAEIITSVDEPIDATHCAG--KENCLGEGARCMTHDLWTSLNTKM 118 Query: 119 FDVLTQYSIECLVRNR 134 + L +++ LV ++ Sbjct: 119 VEFLDSVTLQKLVDDQ 134 >gi|237806924|ref|YP_002891364.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] gi|237499185|gb|ACQ91778.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] Length = 151 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L++ A+ D + I+++A+ IS + KI+ L G ++T+RG Sbjct: 1 MQLTLFTDYALRTLVFLALQPDQQLSTITEVADRFSISRNHVVKIVHQLGMKGYIDTIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL R A I + +++ E + +C C L C +++RKA+ AF Sbjct: 61 KHGGIRLARSARDINLGNLIADMENVSCLLDCQREG---CRLAPGCRFQAIMRKAMRAFM 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 VL+++++ LVR+ + + Sbjct: 118 GVLSEFTLADLVRDEEQMCGLLG 140 >gi|167768072|ref|ZP_02440125.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1] gi|317499363|ref|ZP_07957631.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] gi|167710401|gb|EDS20980.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1] gi|291561069|emb|CBL39869.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SSC/2] gi|316893332|gb|EFV15546.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA] Length = 145 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++ A+H+ + I+ IS +L +I++ L G ++++RG Sbjct: 1 MKISTKGRYAVRLMYDLAMHHTGDWIALKDISRRQEISVKYLEQIVRQLSIRGYLKSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R TI +++K TE S C C C + Sbjct: 61 PKGGYQLSRDPKDYTIYEILKITEGSLQPVACLDDKVNQCERYHECPTIEIWEGLGQVIE 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 + L+ ++E +V N++ IK Sbjct: 121 EYLSGITLEDVV-NKARIK 138 >gi|253999553|ref|YP_003051616.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986232|gb|ACT51089.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. SIP3-4] Length = 162 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L ++G+V +VRG Sbjct: 1 MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + +I++ +++ A +E +C +C C + Sbjct: 61 PGGGYLIAKKPGEISVANIIAAADELIDATQC--GGHKNCRGEKPCMTHELWSTLNAKIL 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L+ S+E LV ++S + I Sbjct: 119 DYLSAVSLEDLVASQSDERAI 139 >gi|319651668|ref|ZP_08005795.1| YrzC protein [Bacillus sp. 2_A_57_CT2] gi|317396735|gb|EFV77446.1| YrzC protein [Bacillus sp. 2_A_57_CT2] Length = 139 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +IT D+++ E E + + + +A Sbjct: 61 AYGGYILGKEPTKITAGDIIRVLEGPISPVEGIEDEEP--------AKRELWMRIRDAVK 112 Query: 120 DVLTQYSIECLVRN 133 DVL ++E L + Sbjct: 113 DVLDNTTLEDLASH 126 >gi|296135538|ref|YP_003642780.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] gi|294339667|emb|CAZ88027.1| HTH-type transcriptional regulator iscR [Thiomonas sp. 3As] gi|295795660|gb|ADG30450.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] Length = 178 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDVAMRQHLGPVTLAGISQRQHISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +++I+I D++ A +E +C + G C + + Sbjct: 61 PGGGYTLSRKSEEISIADIIIAVDEPLDATQCGGKENCNGEDNGPCMTHDLWAQLNAKMV 120 Query: 120 DVLTQYSIECLVRNR 134 + L +++ LV Sbjct: 121 EFLDSVNLKGLVEQN 135 >gi|163857090|ref|YP_001631388.1| hypothetical protein Bpet2778 [Bordetella petrii DSM 12804] gi|163260818|emb|CAP43120.1| unnamed protein product [Bordetella petrii] Length = 179 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C H DC G C + Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATNCGGKH--DCTSGKDGKSGKCMTHELWTTL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 D L S++ LV ++ ++++ A Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRLRQLQEA 146 >gi|313201580|ref|YP_004040238.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688] gi|312440896|gb|ADQ85002.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. MP688] Length = 162 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L ++G+V +VRG Sbjct: 1 MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + +I++ +++ A +E +C +C C + Sbjct: 61 PGGGYLIAKKPGEISVANIIAAADELIDATQC--GGHKNCRGEKPCMTHELWSTLNAKIL 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 D L+ S+E LV ++S + I Sbjct: 119 DYLSAVSLEDLVASQSDERAI 139 >gi|218282015|ref|ZP_03488327.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989] gi|218217002|gb|EEC90540.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989] Length = 142 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+L+ A HND + IA IS+ +L +I+ L K+ +V++ RG Sbjct: 1 MKISTKGRYALRLLIDLAQHNDSGFITLKDIAARQNISKKYLEQIVPILTKSQMVQSNRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + DQI + DV+ ATE + C S CP C + Sbjct: 61 FQGGYKLAKNIDQICVYDVLVATEGNLSCVACLDSDVNTCPRKEDCATLYIYEGLNQVIK 120 Query: 120 DVLTQYSIECLVRNRSS 136 L +++ ++ + S Sbjct: 121 TYLKGITLQDILSHEQS 137 >gi|332560946|ref|ZP_08415264.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] gi|332274744|gb|EGJ20060.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter sphaeroides WS8N] Length = 143 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK +DY +RVL+Y A I + I + A IS+ L K++ L+ AG ++ RGR Sbjct: 1 MTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRGRT 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA +I + +V++ATE F + ECF C + C L +L KA+++F D Sbjct: 61 GGFRLARPASEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPILAKAVSSFMDT 119 Query: 122 LTQYSIECLV 131 L +++I ++ Sbjct: 120 LDEFTIADVM 129 >gi|160943690|ref|ZP_02090921.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii M21/2] gi|158444864|gb|EDP21867.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii M21/2] gi|295103977|emb|CBL01521.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium prausnitzii SL3/3] Length = 143 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H + + ++A ISE +L IL+ LV+ G +E +RG Sbjct: 1 MIVSTKGRYALRVMIDLAEHQSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R DQ T+ +++ TE S C C + +C + + + Sbjct: 61 KGGGYRLTRSPDQYTVSEILMLTEGSLAPVSCLTPGASACARMANCRTYEMWKGLNDLIS 120 Query: 120 DVLTQYSIECLV 131 D + ++ L Sbjct: 121 DYFGKITLADLA 132 >gi|90021059|ref|YP_526886.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950659|gb|ABD80674.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus degradans 2-40] Length = 164 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I+ IS +L ++ L ++ +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQSGPVSLADISRRQQISLSYLEQLFAKLRQSTLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A + + ++ A ES C +C C + + Sbjct: 61 PGGGYKLNRSAADVHVAQIIDAVNESVDATNCGGQG--NCQQGEVCLTHYLWSDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L+ S+ L+ R +K + N Sbjct: 119 TFLSGISLADLLA-RQDVKSVAN 140 >gi|251798334|ref|YP_003013065.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247545960|gb|ACT02979.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 139 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAGKFGEGPISLKSIAERNQLSEHYLEQLVAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + IT DV++ E + + + ++ Sbjct: 61 AYGGYILSKEPETITAGDVIRILEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112 Query: 120 DVLTQYSIECLVRNRSS 136 VL Q ++ LV + + Sbjct: 113 SVLDQTTLADLVNYQDA 129 >gi|153872299|ref|ZP_02001233.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS] gi|152071233|gb|EDN68765.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS] Length = 130 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI H P ++ I++ IS +L ++ L K G+V++ RG Sbjct: 1 MRLTTKGRYAVTAMLDLAINHTKGPITLADISQRQGISLSYLEQLFSRLRKRGLVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD I I DV+ A +E+ +C +C +C + Sbjct: 61 PGGGYRLSRTADTIVIADVIAAVDETVDATKCKGQK--NCRDSRACLTHQLWTDLSEQIR 118 Query: 120 DVLTQYSI 127 + L+ +I Sbjct: 119 EFLSDITI 126 >gi|34498942|ref|NP_903157.1| hypothetical protein CV_3487 [Chromobacterium violaceum ATCC 12472] gi|34104791|gb|AAQ61148.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 146 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RVLMY I +IAE +S L K++ + + G + T RG Sbjct: 1 MQLTRFTDLGLRVLMYLTGQQPGQLATIPEIAERFEVSRNHLVKVVHFMAQQGWLVTSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L RP + + +VV+ E + +C + C L C L L +AL AFF Sbjct: 61 KGGGMTLARPPEHYRLGEVVRMLEGKPQLIDCV---EPPCALSRGCLLKGALDEALAAFF 117 Query: 120 DVLTQYSIECLVRNRSS 136 L Y++ +V + + Sbjct: 118 LSLDGYTLRDIVASPTG 134 >gi|221194677|ref|ZP_03567734.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] gi|221185581|gb|EEE17971.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] Length = 142 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 2/137 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + + Y +R + A+H D + ++E IS +L +++ + KAG VE++RG+ G Sbjct: 5 FSTKGMYALRAMADLAVH-DGWISLGDVSERQHISRKYLEQVISLMHKAGYVESLRGKGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDV 121 G RL R ++ T+ ++++ATE + A C +++ CP +GSC ++ R Sbjct: 64 GYRLTRKPEEYTLGEILRATEGNLAPASCLNCTNETLCPQMGSCTTVNIWRDLGKMTSSF 123 Query: 122 LTQYSIECLVRNRSSIK 138 L ++ + + +I+ Sbjct: 124 LDSKTLADIAWHEGNIQ 140 >gi|150016720|ref|YP_001308974.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903185|gb|ABR34018.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 130 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+L+K +DY R+L+Y A + D + ++A ISE L KI+ L K V + +GR Sbjct: 1 MNLSKFSDYAFRILIYLAKNQDKICTVEELASNLEISEHHLKKIVHRLGKTEYVISTKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L I + ++ TEES ++ECF+S K C C L ++L ++N+F D Sbjct: 61 NGGLKLGLEPKDINLGKILIITEESISISECFSSAKHTCS-TSKCKLKAILSSSINSFVD 119 Query: 121 VLTQYSIECLV 131 ++Y++E ++ Sbjct: 120 EFSKYTLEDIL 130 >gi|291279503|ref|YP_003496338.1| BadM/Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754205|dbj|BAI80582.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter desulfuricans SSM1] Length = 134 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK DY +RV+++ A + D S+++E C I + FL KILQ L K G++++ +G Sbjct: 1 MKLTKAADYALRVMLFIASSDKDKTFMRSELSEICDIPDSFLGKILQTLAKNGLLDSSKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG +L + ++IT+ D+V A + ++ EC ++ C C + +VL K N F Sbjct: 61 KKGGFKLSKSPEEITLYDIVTAIDGDVYINECIDKPEV-CKRSDICKINNVLAKIKNNFV 119 Query: 120 DVLTQYSIECLVRNR 134 L Y+++ L+ N+ Sbjct: 120 KELKNYTLKDLLTNK 134 >gi|154253130|ref|YP_001413954.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154157080|gb|ABS64297.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 145 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 59/141 (41%), Positives = 85/141 (60%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+L Y A+ D IS++AE+ IS L K+ L +AG VET+RGR Sbjct: 1 MRLTLHTDYALRLLTYLALKPDEIATISEVAESYSISRNHLTKVAHELGRAGFVETLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A +I I DVV+A EE F + ECFA+ C + +C L VL++AL+A+ Sbjct: 61 GGGLRLARAAGKIGIGDVVRAMEEDFCIVECFAAETDRCRIGPACRLKRVLKQALDAWLA 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 VL ++ LV ++++ Sbjct: 121 VLDDTTLADLVERPQPLRRLL 141 >gi|95930242|ref|ZP_01312980.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] gi|95133705|gb|EAT15366.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] Length = 150 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y +R ++ ++ + P I +I+ IS +L ++ L + +V +VRG Sbjct: 1 MRLSTKAQYAVRAMVRLSLEQRETPVSIREISNHENISLTYLEQLFAKLRRGELVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPADQI + ++ + EE+ C +C C +V ++ Sbjct: 61 PGGGYVLARPADQIKVDQIIDSVEETLIPVSCMDEFG-NCACSDQCVTHTVWQELGERIR 119 Query: 120 DVLTQYSIECLVRNRSS 136 L+ SIE L R Sbjct: 120 GFLSSVSIEDLTREAQE 136 >gi|154686893|ref|YP_001422054.1| YrzC [Bacillus amyloliquefaciens FZB42] gi|154352744|gb|ABS74823.1| YrzC [Bacillus amyloliquefaciens FZB42] Length = 138 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H D P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGDGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E E + + + +A Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112 Query: 120 DVLTQYSIECLV 131 DVL ++E L Sbjct: 113 DVLDSTTLEDLA 124 >gi|226941780|ref|YP_002796854.1| transcriptional regulator [Laribacter hongkongensis HLHK9] gi|226716707|gb|ACO75845.1| Predicted transcriptional regulator [Laribacter hongkongensis HLHK9] Length = 159 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L +A +VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLALRQHKGPVTLAGISERQDISLSYLEQLFGKLRRAELVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT+ D++ A +E +C DC C + + Sbjct: 61 PGGGYCLARQPAAITVADIIIAVDEPLDATQCGGRE--DCHDSRRCMTHDLWIDLNRTIY 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ L+ + + Sbjct: 119 AYLEGITLGSLMDRQRA 135 >gi|198282957|ref|YP_002219278.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666431|ref|YP_002425160.1| iron-sulfur cluster assembly transcription factor IscR [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247478|gb|ACH83071.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518644|gb|ACK79230.1| iron-sulfur cluster assembly transcription factor IscR [Acidithiobacillus ferrooxidans ATCC 23270] Length = 162 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++ ++ I++ IS +L ++ L + G+VE+VRG Sbjct: 1 MKLTTKGRYAVTAMLDLALNQRGGVVTVADISQRQQISVAYLEQLFGRLRRFGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 GG RL P +I + +V+A ES +C + C G C + + N Sbjct: 61 PGGGYRLAMPDSEIPLTRIVEAVNESISTTQCGGDPHLCCKGDGQQCLTHDLWEELGNRI 120 Query: 119 FDVLTQYSIECLVRNR 134 + L ++ LV+ + Sbjct: 121 AEFLGGITLGQLVQKQ 136 >gi|153814361|ref|ZP_01967029.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756] gi|317500076|ref|ZP_07958311.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087700|ref|ZP_08336626.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848757|gb|EDK25675.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756] gi|316898561|gb|EFV20597.1| iron-sulfur cluster assembly transcription factor IscR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409681|gb|EGG89117.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium 3_1_46FAA] Length = 143 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A + + + +A IS +L +IL L K G++E V G Sbjct: 1 MLISTKGRYALRVMIDLAQNKESGHVAMKIVAARQGISLKYLERILPVLTKNGLIEGVHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RLCR + + ++++ TE + C + C C + Sbjct: 61 KGGGYRLCREPKEYKVGEILRLTEGNLAPVSCLECNAPVCERKDQCHTIGMWTDFHKMIN 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D ++E L+ + + + Sbjct: 121 DYFDGITLEDLMHRNTELSE 140 >gi|217965274|ref|YP_002350952.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|217334544|gb|ACK40338.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|307570170|emb|CAR83349.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99] Length = 138 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATRQNVSPTYLSKVLTMLVKAGFIESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|34496550|ref|NP_900765.1| hypothetical protein CV_1095 [Chromobacterium violaceum ATCC 12472] gi|34102404|gb|AAQ58770.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 164 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I+E IS +L ++ L +A +V++VRG Sbjct: 1 MRLTTKGRFAVTAMLDLAMREEGGPVTLAGISERQSISLSYLEQLFGKLRRAELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I++ D++ A +E +C +C C + F Sbjct: 61 PGGGYTLAKQICDISVADIIVAVDEPVDATQCGGRE--NCRGSQRCMTHDLWTNLNVTIF 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L++ S+ LV + + ++ Sbjct: 119 DYLSKVSLASLVEEQHAKEQ 138 >gi|144900519|emb|CAM77383.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 157 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL++ + I++IAE IS+ L K++ L +AG +ETVRG+ Sbjct: 13 MRLTLHTDYALRVLVHVGLRGGELVTINEIAECHGISKNHLTKVVHQLGRAGFLETVRGK 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL + + + V+ E+ F +A+C AS+ C + +C + ++AFF Sbjct: 73 YGGIRLLVDPRTLRLGEFVRQVEDDFALAQCMRASNADSCRVSAACLARRAFGQGIDAFF 132 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L +++ ++ ++ + Sbjct: 133 KALNVHTLADMIDAERALPPL 153 >gi|115376145|ref|ZP_01463389.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca DW4/3-1] gi|115366868|gb|EAU65859.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca DW4/3-1] Length = 264 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YGI L++ ND P +AE IS FL KI L KAGIV G R Sbjct: 90 HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 149 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL + + I+ L++V A E + +C F G C + +V+ Sbjct: 150 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 209 Query: 113 KALNAFFDVLTQYSIECLVR 132 +A + + L + S+ + + Sbjct: 210 RAEKSMRETLAKESLADVAK 229 >gi|295106061|emb|CBL03604.1| transcriptional regulator, BadM/Rrf2 family [Gordonibacter pamelaeae 7-10-1-b] Length = 136 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++ A + P + Q A +S +L ++ LVKAGI++++R Sbjct: 1 MMISTKGRYALRLMIDIASREQDGSPVTMRQAAAREDLSVKYLEQLGGALVKAGILKSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L +PA+ IT DV++ATE C CP C + R Sbjct: 61 GVSGGYLLAKPAEDITAGDVLRATEGGCAPVACLEDGAEACPRRSECVAVNFWRGLDRTI 120 Query: 119 FDVLTQYSIECLVR 132 + ++ LV+ Sbjct: 121 EGYVDGVTLADLVK 134 >gi|261400315|ref|ZP_05986440.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria lactamica ATCC 23970] gi|269209934|gb|EEZ76389.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria lactamica ATCC 23970] Length = 148 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAARINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ +++ Sbjct: 119 DYLGSVTLQSIIEQKNN 135 >gi|171910736|ref|ZP_02926206.1| RfF2 family protein [Verrucomicrobium spinosum DSM 4136] Length = 195 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 MHLTK+ +Y +R L+ I +S +AE + F+ ILQ L AG VE+ Sbjct: 1 MHLTKKGEYALRTLIRLGIAQRQGKDVVSVSNLAEGENLPFKFIENILQELRLAGYVESK 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKA 114 RG+ GG RL +P ITI +VV+ + C + + CP CGL ++ Sbjct: 61 RGKEGGCRLAKPQVDITIGEVVRLIDGRLAPIGCASETDYERCTCPDEHHCGLRMLMIDV 120 Query: 115 LNAFFDVLTQYSIECLV 131 NA +L +Y++ +V Sbjct: 121 RNAIAQILDRYTLADVV 137 >gi|288555374|ref|YP_003427309.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4] gi|288546534|gb|ADC50417.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4] Length = 139 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A++IT D+++ E E + + K +A Sbjct: 61 AYGGYMLAKDANEITAGDIIRVLEGPISPVEVMDDEEP--------AKRDLWIKIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 DVL +++ L + Sbjct: 113 DVLDNTTLDDLAK 125 >gi|311107146|ref|YP_003979999.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8] gi|310761835|gb|ADP17284.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8] Length = 180 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C + Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 D L S++ LV ++ ++++ A Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146 >gi|224543708|ref|ZP_03684247.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM 15897] gi|224523361|gb|EEF92466.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM 15897] Length = 143 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A H+ + +IA ISE +L I++ L K VE +RG Sbjct: 1 MMISTKGRYALRVMIDLAQHDRSKYIPLKEIAARQDISEKYLEIIIKSLSKKHFVEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + ++ ++K TE + C A C C + Sbjct: 61 KGGGYRLTHAPEDYSVASILKVTEGTLAPVSCLADECNTCERASYCNTLPMWTGLHKVIT 120 Query: 120 DVLTQYSIECLV 131 D L S+ LV Sbjct: 121 DYLEGVSLSDLV 132 >gi|257784202|ref|YP_003179419.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] gi|257472709|gb|ACV50828.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] Length = 150 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 2/137 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + + Y +R + A+H + + ++E IS +L +++ + KAG V+++RG+ G Sbjct: 5 FSTKGMYALRAMADLAVHEGW-VSLGDVSERQNISRKYLEQVIALMHKAGYVDSLRGKGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121 G RL R + T+ ++++A E + A C CP + SC ++ R Sbjct: 64 GYRLTRKPEDYTLGEILRAAEGNLAPASCLNCTNTTLCPQMESCTTINIWRDLGRMTSSF 123 Query: 122 LTQYSIECLVRNRSSIK 138 L ++ + N ++ Sbjct: 124 LDSKTLADIAHNEGNMH 140 >gi|134291578|ref|YP_001115347.1| BadM/Rrf2 family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134767|gb|ABO59092.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia vietnamiensis G4] Length = 170 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MHLT TDY +RV+MY A+ + I +IA A IS L K++ L + G +ET R Sbjct: 1 MHLTLYTDYTLRVMMYLALKYPGGGVSTIDEIAGAYGISRNHLTKVVHELSQLGFIETSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNA 117 GR GG L R +QI++ ++V+ E+ F V C C + C L L +A++A Sbjct: 61 GRAGGACLARAPEQISVGEIVRTAEKDFAVVSCHDMTVAHGCTIFPVCNLRHRLYRAVDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 F L ++ + + + Sbjct: 121 FLHELDTMTLREAIAAPTVAATVLG 145 >gi|33592860|ref|NP_880504.1| putative DNA-binding protein [Bordetella pertussis Tohama I] gi|33596642|ref|NP_884285.1| putative DNA-binding protein [Bordetella parapertussis 12822] gi|33601258|ref|NP_888818.1| putative DNA-binding protein [Bordetella bronchiseptica RB50] gi|33572508|emb|CAE42084.1| putative DNA-binding protein [Bordetella pertussis Tohama I] gi|33573343|emb|CAE37327.1| putative DNA-binding protein [Bordetella parapertussis] gi|33575693|emb|CAE32771.1| putative DNA-binding protein [Bordetella bronchiseptica RB50] gi|332382273|gb|AEE67120.1| putative DNA-binding protein [Bordetella pertussis CS] Length = 170 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114 GG L R A +T+ D++ A +E C K DC G C + Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWTTL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 D L S++ LV ++ ++++ A Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146 >gi|313624752|gb|EFR94699.1| putative transcriptional regulator [Listeria innocua FSL J1-023] Length = 138 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKAAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ +I +V Sbjct: 119 DYLSKQTIGSIV 130 >gi|291458397|ref|ZP_06597787.1| iron-sulfur cluster assembly transcription factor IscR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418930|gb|EFE92649.1| iron-sulfur cluster assembly transcription factor IscR [Oribacterium sp. oral taxon 078 str. F0262] Length = 134 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + L+ A ++D P I +I+E IS +L +I+ +VK G + +VR Sbjct: 1 MMISTKGRYALTTLIDIAENSDGRTPVSIKEISERRGISLKYLEQIIALMVKGGFLRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG RPA +I + D++ A E + EC K C +C + R+ A Sbjct: 61 GARGGYLFTRPASEIAVGDILNAAEGTLAPVECLMDGK-SCEKSATCPTFPLYREIDEAI 119 Query: 119 FDVLTQYSIECLVRN 133 + V+ +Y + L++ Sbjct: 120 YSVVNRYHLSDLLKK 134 >gi|325983001|ref|YP_004295403.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp. AL212] gi|325532520|gb|ADZ27241.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp. AL212] Length = 162 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ A+ +P ++ I++ IS +L ++ L ++ +V++VRG Sbjct: 1 MRLTTKGRFAVTALLDLALQQSSHPITLADISQRQKISLSYLEQLFAKLRQSELVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D+++I D++ A +E +C K +C G C + K F Sbjct: 61 PGGGYCLSKDLDKVSIADIILAVDEPIDATQC--GGKENCHNDGKCMTHDLWAKLNELIF 118 Query: 120 DVLTQYSIECLVRNR 134 + L +++ LV N+ Sbjct: 119 EYLGAVTLKELVDNQ 133 >gi|319935067|ref|ZP_08009510.1| iron-sulfur cluster assembly transcription factor IscR [Coprobacillus sp. 29_1] gi|319810085|gb|EFW06454.1| iron-sulfur cluster assembly transcription factor IscR [Coprobacillus sp. 29_1] Length = 143 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A H+ + + +IA+ ISE +L I++ LV+A V+ +RG Sbjct: 1 MMISTKGRYALRIMLDLAEHDCEVYLPLREIAQRQNISEKYLEIIIKILVQARFVQGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R T+ ++K TE S C C C + +K Sbjct: 61 KGGGYRLVRDPHTYTVGSILKLTEGSLAPVACLECSPNTCERSQLCKTLPMWQKLDQMID 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L+ + Sbjct: 121 EYFEGITLADLMNS 134 >gi|16799715|ref|NP_469983.1| hypothetical protein lin0640 [Listeria innocua Clip11262] gi|16802678|ref|NP_464163.1| hypothetical protein lmo0636 [Listeria monocytogenes EGD-e] gi|224502064|ref|ZP_03670371.1| hypothetical protein LmonFR_06027 [Listeria monocytogenes FSL R2-561] gi|255030335|ref|ZP_05302286.1| hypothetical protein LmonL_16821 [Listeria monocytogenes LO28] gi|16410025|emb|CAC98714.1| lmo0636 [Listeria monocytogenes EGD-e] gi|16413080|emb|CAC95872.1| lin0640 [Listeria innocua Clip11262] Length = 138 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|169795834|ref|YP_001713627.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|260554898|ref|ZP_05827119.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC 19606] gi|301345360|ref|ZP_07226101.1| putative transcriptional regulator [Acinetobacter baumannii AB056] gi|301512433|ref|ZP_07237670.1| putative transcriptional regulator [Acinetobacter baumannii AB058] gi|301596111|ref|ZP_07241119.1| putative transcriptional regulator [Acinetobacter baumannii AB059] gi|332853212|ref|ZP_08434632.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332869405|ref|ZP_08438771.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] gi|169148761|emb|CAM86627.1| conserved hypothetical protein; putative transcriptional regulator [Acinetobacter baumannii AYE] gi|193077439|gb|ABO12252.2| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978] gi|260411440|gb|EEX04737.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC 19606] gi|332728782|gb|EGJ60142.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013150] gi|332732736|gb|EGJ63953.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii 6013113] Length = 182 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113 G L R A +I+ LD+V A E + EC F + D G C + +V+ + Sbjct: 64 GYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQ 123 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A D L +++ + Sbjct: 124 AEKAMRDALGAHTLGDIADR 143 >gi|323490017|ref|ZP_08095238.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396313|gb|EGA89138.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 138 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIDLAKHYGEGPLPLRKIAAQNDLSEAYLEQLVGPLRNSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I+ DV++ E E K + + +A Sbjct: 61 AYGGYMLTRHPKEISAGDVIRVLEGPIQPVEGIEDEKQP--------QRELWVRIRDAVK 112 Query: 120 DVLTQYSIECLVRNRSS 136 +VL +IE L ++ Sbjct: 113 NVLDTTTIEDLANAKND 129 >gi|310824816|ref|YP_003957174.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397888|gb|ADO75347.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca DW4/3-1] Length = 177 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YGI L++ ND P +AE IS FL KI L KAGIV G R Sbjct: 3 HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL + + I+ L++V A E + +C F G C + +V+ Sbjct: 63 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 122 Query: 113 KALNAFFDVLTQYSIECLVR 132 +A + + L + S+ + + Sbjct: 123 RAEKSMRETLAKESLADVAK 142 >gi|225026056|ref|ZP_03715248.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353] gi|224956618|gb|EEG37827.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353] Length = 136 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++Y A ++ + + +IAE IS +L I+ L K ++ + RG Sbjct: 1 MMVSSKGRYALRVMIYLAQNDREELIPLKEIAENQNISMKYLEMIVSLLHKGNMLISGRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG RL R + TI ++K TE++ C K+ C G C + +K Sbjct: 61 KKGGYRLARKPSEYTIGSILKLTEKTLAPVNCLEGGKVTCEKAGYCITLPMWQKLDGIID 120 Query: 120 DVLTQYSIECLVRNR 134 D L ++E L+ R Sbjct: 121 DYLETVTLEDLLEGR 135 >gi|332655322|ref|ZP_08421062.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] gi|332515827|gb|EGJ45437.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] Length = 142 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R Y +RV++ A H +D + ++A+ IS +L +I+ L K +VE V G+ Sbjct: 2 ISTRGRYALRVMIDLAEHADDGYIPMKEVAQRQGISLKYLERIMPALSKNNLVEGVHGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R + T ++++ E S C C +C ++ +K + Sbjct: 62 GGYRLSRKPEDYTAGEILRLVEGSLAPVACLECGAEPCSRQDTCKTIAMWKKFYDLVNGY 121 Query: 122 LTQYSIECLV 131 ++ L Sbjct: 122 FDHITVADLA 131 >gi|260576973|ref|ZP_05844954.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] gi|259020815|gb|EEW24130.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 75/141 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +T+ RVLM CA++ R ++IA AC S L ++ L G +ETVRGR Sbjct: 1 MRLTTKTNLAARVLMACAVNEGVTLRTAEIARACNASLNHLLLVVNALHTNGFIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L RP Q+++ +V + E AECF CPL +C L S + +A+ AF+ Sbjct: 61 SGGLHLTRPPAQVSMGEVFRTFESGTPFAECFDPDTNTCPLSTTCRLRSYVARAVEAFYH 120 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 + ++E LV+ + + Sbjct: 121 EMDMVTLEDLVKGNCGLSGLL 141 >gi|218887633|ref|YP_002436954.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758587|gb|ACL09486.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 264 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + YG R+++ A H+ P + +A +S+ +L KI + L +AG++ + RG Sbjct: 1 MRLLTNSRYGTRMMLDIAQHSRLGPVLMRDVARRLDVSQKYLEKISRSLKEAGLLTSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R D I++ DVV+ E + C + +C C V ++ A F Sbjct: 61 PSGGHRLGRAPDDISVGDVVRVLEGGAEMVGC-GRDEENCTHAPGCLTRMVWKECSRAMF 119 Query: 120 DVLTQYSIECLVR 132 L + L+R Sbjct: 120 ARLDAITFGELLR 132 >gi|308174453|ref|YP_003921158.1| transcription repressor [Bacillus amyloliquefaciens DSM 7] gi|307607317|emb|CBI43688.1| transcription repressor [Bacillus amyloliquefaciens DSM 7] gi|328554372|gb|AEB24864.1| transcription repressor [Bacillus amyloliquefaciens TA208] gi|328912776|gb|AEB64372.1| transcription repressor [Bacillus amyloliquefaciens LL3] Length = 138 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E E + + + +A Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112 Query: 120 DVLTQYSIECLV 131 DVL ++E L Sbjct: 113 DVLDSTTLEDLA 124 >gi|300704652|ref|YP_003746255.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum CFBP2957] gi|299072316|emb|CBJ43650.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum CFBP2957] Length = 191 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 6/141 (4%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNAF 118 GG L R AD +T+ D++ A +E +C K +C G C + Sbjct: 61 GGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQKM 118 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 119 VEYLDSVSLQDLVDQQRERQP 139 >gi|28899582|ref|NP_799187.1| transcriptional repressor NsrR [Vibrio parahaemolyticus RIMD 2210633] gi|153839631|ref|ZP_01992298.1| protein YjeB [Vibrio parahaemolyticus AQ3810] gi|260361405|ref|ZP_05774467.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus K5030] gi|260876677|ref|ZP_05889032.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AN-5034] gi|260896630|ref|ZP_05905126.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus Peru-466] gi|260900889|ref|ZP_05909284.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AQ4037] gi|731996|sp|P40610|NSRR_VIBPA RecName: Full=HTH-type transcriptional repressor nsrR gi|507739|gb|AAA62191.1| unnamed ORF; similar to ORF 3' of E.coli PurA and ORF 5' of Shigella flexneri VacB: Swiss-Prot Accession Number P21498 [Vibrio parahaemolyticus] gi|28807818|dbj|BAC61071.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149746852|gb|EDM57840.1| protein YjeB [Vibrio parahaemolyticus AQ3810] gi|308086327|gb|EFO36022.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus Peru-466] gi|308093960|gb|EFO43655.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AN-5034] gi|308106515|gb|EFO44055.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus AQ4037] gi|308112892|gb|EFO50432.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus K5030] Length = 141 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E + C C + +C L L KA +AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVEF---CHITPACRLKDKLAKAKSAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L + +IE L+ + S + + Sbjct: 117 AELDECTIESLLSDNSELLILL 138 >gi|288572865|ref|ZP_06391222.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568606|gb|EFC90163.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 140 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +T YG+R ++ A P IS++A+ +SE +L ++ L K+G+V +VR Sbjct: 1 MKLSTKTRYGLRAMIDLARGYGTGRPISISEVAKNQTLSESYLEQLFSKLRKSGLVSSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R +I +++ + E +A+C C G C + K ++ Sbjct: 61 GAQGGYLLSRDPKEILTSEIIDSLEGPISLADCVDYGT--CERGGCCPARFLWEKVSDSI 118 Query: 119 FDVLTQYSIECLVRNRS 135 V + ++ ++ Sbjct: 119 ERVTSSTTLWDIIEEYD 135 >gi|125975009|ref|YP_001038919.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005105|ref|ZP_05430075.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|125715234|gb|ABN53726.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|255990956|gb|EEU01068.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|316939170|gb|ADU73204.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 147 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R ++ A+++ + IAE ISE +L ++ L KA IV++++G Sbjct: 1 MKMSTKGRYGLRAMLDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L IT+ +++ E + V + + C V K + Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVD-IDDRDSEVSKEEKCINEFVWNKINKSID 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 V+ ++ L+R ++ Sbjct: 120 KVVDNITLGDLLREYQKLED 139 >gi|89100970|ref|ZP_01173815.1| YrzC [Bacillus sp. NRRL B-14911] gi|89084306|gb|EAR63462.1| YrzC [Bacillus sp. NRRL B-14911] Length = 139 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V ++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPISLKSIAQTNDLSEHYLEQLIAPLRNAGLVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT D+++ E E + + + +A Sbjct: 61 AYGGYVLGHEPADITSGDIIRVLEGPISPVEGIEDEEP--------AKRELWMRIRDAVK 112 Query: 120 DVLTQYSIECLVRNRSS 136 +VL ++E L + S Sbjct: 113 EVLDSTTLEDLANHTDS 129 >gi|255767629|ref|NP_390630.2| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. subtilis str. 168] gi|296333158|ref|ZP_06875611.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675336|ref|YP_003867008.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii str. W23] gi|321312279|ref|YP_004204566.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis BSn5] gi|229462859|sp|O34527|CYMR_BACSU RecName: Full=HTH-type transcriptional regulator CymR; AltName: Full=Cysteine metabolism repressor gi|225185257|emb|CAB14694.2| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. subtilis str. 168] gi|296149356|gb|EFG90252.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413580|gb|ADM38699.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis subsp. spizizenii str. W23] gi|320018553|gb|ADV93539.1| transcriptional regulator of cysteine biosynthesis [Bacillus subtilis BSn5] Length = 138 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L D IT D+++ E E + + + +A Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112 Query: 120 DVLTQYSIECLV 131 +VL ++E L Sbjct: 113 EVLDSTTLEDLA 124 >gi|293607996|ref|ZP_06690299.1| transcriptional regulator [Acinetobacter sp. SH024] gi|292828569|gb|EFF86931.1| transcriptional regulator [Acinetobacter sp. SH024] Length = 182 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113 G L R A +I+ LD+V A E + EC F + D G C + +V+ + Sbjct: 64 GYLLARSAHEISFLDIVNAIEGEKPLFECQEVREKCAVFNNAPPDWATSGVCAVHAVMLQ 123 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A D L +++ + Sbjct: 124 AEKAMRDALGAHTLGDIADR 143 >gi|209964918|ref|YP_002297833.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209958384|gb|ACI99020.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 156 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A + +P +++IA+ IS +L ++ L K G+V++VRG Sbjct: 1 MRLSTKGRYAVMAMVDLAKSSKGHPVALAEIADRQEISLSYLEQLFAKLRKGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 GG L PA+ + I D++ A +E C A C + C + + N Sbjct: 61 PGGGYLLASPAEAMRISDIILAVDEPIRATRCAAHSPAGCRANKTRCLTHDLWEELGNQI 120 Query: 119 FDVLTQYSIECLVRNR 134 L+ S+ +V R Sbjct: 121 HLYLSSVSLADVVERR 136 >gi|39996739|ref|NP_952690.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39983620|gb|AAR35013.1| Rrf2 family protein [Geobacter sulfurreducens PCA] Length = 136 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A I IS+IAEA + + FL KILQ K GIV++ RG Sbjct: 1 MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +IT+ +VV+A E C C CG+ V RK Sbjct: 61 AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLL-GSGTCERDNICGVHPVWRKVQERVA 119 Query: 120 DVLTQYSIECLVR 132 + L ++E L Sbjct: 120 ETLDAVTLEELAA 132 >gi|56963349|ref|YP_175080.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909592|dbj|BAD64119.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 139 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A+ IT D+++ E E + + K +A Sbjct: 61 AYGGYMLAKDAEDITAGDIIRVLEGPISPVEVLEDEEP--------AKRDLWIKIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 +VL + ++ L Sbjct: 113 EVLDKTTLADLAN 125 >gi|295399330|ref|ZP_06809312.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312110109|ref|YP_003988425.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294978796|gb|EFG54392.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311215210|gb|ADP73814.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 138 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT DV++ E E + + + +A Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLEGPISPVEELDEEEP--------AKRELWIRVRDAVE 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E L + Sbjct: 113 EVLDSTTLEDLAK 125 >gi|304320316|ref|YP_003853959.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis HTCC2503] gi|303299218|gb|ADM08817.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis HTCC2503] Length = 174 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 6/139 (4%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ Y +R ++ A D I+ I+E I + FL +IL L + G++++ RG+ Sbjct: 23 ISQKAKYALRAMVLLARAHAEDEALIIADISERQNIPKKFLEQILLDLKRHGLLDSRRGK 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG L RPADQIT +V++ E C + DC SC + V + + Sbjct: 83 NGGYMLLRPADQITFGEVLRIIEGPIAPLPCLSKMAYRKCEDCDGEKSCEIRRVFAEVAD 142 Query: 117 AFFDVLTQYSIECLVRNRS 135 A VL + +I + + Sbjct: 143 ATRAVLDKTTIADAIADER 161 >gi|196228245|ref|ZP_03127112.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] gi|196227648|gb|EDY22151.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] Length = 209 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMY--CAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+KR +Y +R L+ A P +I ++ E + FL +IL L AG +ET Sbjct: 1 MKLSKRGEYALRALIDFGIAYELGRPLLKIGELVEKERLPVKFLEQILTQLRGAGYIETK 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKA 114 RG+ GG L +P QI++ V++ + C + + CP CGL ++ Sbjct: 61 RGKAGGYFLAKPPKQISLGQVIRLIDGPLAPISCVSVTAYERCSCPDEAHCGLRMLMLDV 120 Query: 115 LNAFFDVLTQYSIECLVR 132 NA +L +Y + +V Sbjct: 121 RNAIARILDRYVLGDVVD 138 >gi|253578507|ref|ZP_04855779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850825|gb|EES78783.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 158 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ +H++ + IAE IS +L +++ L KAG+V++ RG Sbjct: 1 MKLSTRARYGLKALIDLGLHSENEAISLQSIAERQDISTSYLEQLMAMLKKAGLVKSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG +L +PAD+I++ +V++ E S A C + C C V ++ ++ Sbjct: 61 AYGGYQLGKPADEISVGEVLRVLEGSLEAAACPGIENDGTCHGSDVCVAKLVWKRINDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + + + L+ + + Sbjct: 121 TNAVDTLMLGQLIEESRRVHE 141 >gi|315281262|ref|ZP_07869928.1| putative transcriptional regulator [Listeria marthii FSL S4-120] gi|313615086|gb|EFR88564.1| putative transcriptional regulator [Listeria marthii FSL S4-120] Length = 138 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQMD 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|328552565|gb|AEB23057.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens TA208] gi|328910965|gb|AEB62561.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens LL3] Length = 144 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A + + I +IA+ IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+ Sbjct: 61 RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 VL +Y++ LV+N+ I ++ + Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLKS 144 >gi|332969189|gb|EGK08221.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella kingae ATCC 23330] Length = 149 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQSHAVKLNAISERQQISLSYLEQLFSKLRRAGLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ADQI I ++ A E+ C S K +C C ++ + Sbjct: 61 PGGGYVLGKSADQINISQIIAAAEDRLDATLC--SGKANCQSGAPCLTHNLWENLNHTID 118 Query: 120 DVLTQYSIECLVRNRSS 136 + L+ ++ L+ + Sbjct: 119 NYLSSVTLASLLEQQQP 135 >gi|226311480|ref|YP_002771374.1| transcriptional regulator of cysteine metabolism [Brevibacillus brevis NBRC 100599] gi|226094428|dbj|BAH42870.1| transcriptional regulator of cysteine metabolism [Brevibacillus brevis NBRC 100599] Length = 139 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELANRCGEGPTSLRSIAQKHDLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D+I+ DV++ E E FA + + + ++ Sbjct: 61 AYGGYVLAKQPDEISAGDVIRVLEGPISPVE-FAEEEDPAK-------RFLWLRIRDSIS 112 Query: 120 DVLTQYSIECLV 131 VL S++ L+ Sbjct: 113 SVLDSTSLQDLI 124 >gi|46906881|ref|YP_013270.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091594|ref|ZP_00229390.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|224498715|ref|ZP_03667064.1| Rrf2 family protein [Listeria monocytogenes Finland 1988] gi|226223260|ref|YP_002757367.1| hypothetical protein Lm4b_00657 [Listeria monocytogenes Clip81459] gi|254824091|ref|ZP_05229092.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|254828298|ref|ZP_05232985.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|254932089|ref|ZP_05265448.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|254994106|ref|ZP_05276296.1| hypothetical protein LmonocytoFSL_14839 [Listeria monocytogenes FSL J2-064] gi|255023288|ref|ZP_05295274.1| hypothetical protein LmonocyFSL_07190 [Listeria monocytogenes FSL J1-208] gi|255520380|ref|ZP_05387617.1| hypothetical protein LmonocFSL_03972 [Listeria monocytogenes FSL J1-175] gi|290892831|ref|ZP_06555822.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|46880147|gb|AAT03447.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019913|gb|EAL10650.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|225875722|emb|CAS04425.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600690|gb|EEW14015.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|290557643|gb|EFD91166.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|293583644|gb|EFF95676.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|293593322|gb|EFG01083.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|328467204|gb|EGF38284.1| hypothetical protein LM1816_00045 [Listeria monocytogenes 1816] gi|328475713|gb|EGF46459.1| hypothetical protein LM220_02615 [Listeria monocytogenes 220] gi|332311056|gb|EGJ24151.1| Rrf2 family transcriptional regulator [Listeria monocytogenes str. Scott A] Length = 138 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|317131673|ref|YP_004090987.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] gi|315469652|gb|ADU26256.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] Length = 143 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+R L+ A+H D + IA+ IS +L ++ L KAG V +V+G Sbjct: 1 MKLSTKGRYGLRALLDLAVHADGSHVSLYNIADRQQISVNYLEQVFSQLRKAGFVRSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L ++TI +++ E S +A + PL C V + ++ Sbjct: 61 AQGGYALAMQPQEMTIGGILRVLEGSLHIAT--EETSGENPLQD-CIKKYVWDRINDSID 117 Query: 120 DVLTQYSIECLVRNRSS 136 V+ ++ LV S Sbjct: 118 QVVDSITLGDLVEEYRS 134 >gi|329119447|ref|ZP_08248132.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria bacilliformis ATCC BAA-1200] gi|327464380|gb|EGF10680.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria bacilliformis ATCC BAA-1200] Length = 167 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H +++ I+E IS +L ++ L +AG+V+++RG Sbjct: 21 MRLTTKGRFAVTAMLDLAMHAQKGAVKLNDISERQNISLSYLEQLFGKLRRAGLVDSIRG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A I+I ++ A E+ C S K +C C + Sbjct: 81 PGGGYILAADARNISIAQIITAAEDKLDATLC--SGKTNCHNGAPCLTHDLWENLNRTIN 138 Query: 120 DVLTQYSIECLVRNRS 135 L+ ++E ++ + Sbjct: 139 QYLSSVTLETVLSQKD 154 >gi|298505751|gb|ADI84474.1| transcriptional regulator, putative [Geobacter sulfurreducens KN400] Length = 137 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A I IS+IAEA + + FL KILQ K GIV++ RG Sbjct: 2 MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +IT+ +VV+A E C C CG+ V RK Sbjct: 62 AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLG-SGTCERDNICGVHPVWRKVQERVA 120 Query: 120 DVLTQYSIECLVR 132 + L ++E L Sbjct: 121 ETLDAVTLEELAA 133 >gi|328472291|gb|EGF43161.1| transcriptional repressor NsrR [Vibrio parahaemolyticus 10329] Length = 141 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E + C C + +C L L KA AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVEF---CHITPACRLKDKLAKAKRAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L + +IE L+ + S + + Sbjct: 117 AELDECTIESLLSDNSELLILL 138 >gi|237808576|ref|YP_002893016.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] gi|237500837|gb|ACQ93430.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM 9187] Length = 154 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R LM+ A + + + +I+ IS + K++ LV G + +VRG Sbjct: 1 MKLTTYTDYGLRTLMFMACLSPGARSSVVEISNYYDISRNHMVKVVVQLVSLGYLSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L R I I V++ E + +C C LV C LT+ L+ + AF Sbjct: 61 KNGGITLARLPRDIRIGQVIRDLESNLNGVDC---GSPGCKLVPVCRLTNALKVGMEAFL 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 + ++++ LV N I I Sbjct: 118 AAMDEFTLSDLVNNADQIIAILQ 140 >gi|315186439|gb|EFU20199.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6578] Length = 155 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + Y IR ++ A+ + P I +IAE IS FL +I L K GI+++VRG Sbjct: 1 MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKVGIIDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115 GG L RP + ITI D+ A +E + C C C L V ++ Sbjct: 61 PGGGFVLSRPLESITIKDIFDAVDEGLGITPCTEEEGKSGPELCEKAERCLLYEVWKETA 120 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + +++ L+ Sbjct: 121 SHLRQYFASITLKDLIDKAKK 141 >gi|331694605|ref|YP_004330844.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949294|gb|AEA22991.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia dioxanivorans CB1190] Length = 148 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T DY +RVL+Y + + IA A IS L K++ L AG+VET RGR Sbjct: 1 MRHTNHADYALRVLLYLRVAPGRRGSVGDIATAHHISRHHLDKVVTGLAAAGLVETARGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R IT+ ++++A E + V EC + C + G CG +V +AL+A+F Sbjct: 61 GGGVRLVRDPASITLGEIMRAMENDYAVVECLGPARF-CRVAGVCGARNVFSRALDAYFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL ++E + N ++ Sbjct: 120 VLDDATLEEIADNDLGLRGALG 141 >gi|308172925|ref|YP_003919630.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM 7] gi|307605789|emb|CBI42160.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM 7] Length = 144 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +RVL++ A + + I +IA+ IS+ L K++ L + G VET+RG Sbjct: 1 MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+ Sbjct: 61 RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 VL +Y++ LV+N+ I ++ + Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144 >gi|327439663|dbj|BAK16028.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 139 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + QIA +SE +L +++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRQIAADKDLSEAYLEQLVSPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++I+ DV++ E E + + + + +A Sbjct: 61 AYGGYMLAHKPNEISAADVIRVLEGPIQPVEGIENEEAP--------QRELWMRIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 +VL +I+ L + Sbjct: 113 NVLDTTTIDDLAK 125 >gi|84683690|ref|ZP_01011593.1| Transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|84668433|gb|EAQ14900.1| Transcriptional regulator [Rhodobacterales bacterium HTCC2654] Length = 147 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 73/128 (57%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M+C ++ D R S+IAEA S L +++ L + G VET RGR GG+ L R + I+ Sbjct: 1 MFCGVNTDQTVRSSEIAEATNASGNHLSQVIHKLQQFGYVETRRGRGGGLMLARKPEAIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I + + E ECF + +CPL+ +C L + ++KAL+AF+ L + ++ LV++ Sbjct: 61 IGALFRDFEAEVPFTECFDAANNNCPLIETCRLNTYIKKALDAFYSELDEVTLADLVKDN 120 Query: 135 SSIKKIFN 142 + ++ + Sbjct: 121 CGLIELLD 128 >gi|167747110|ref|ZP_02419237.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662] gi|167654070|gb|EDR98199.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662] Length = 150 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + Y +R+L A HN + +++ IS +L +I++ L G ++++RG Sbjct: 7 KISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRGP 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG +L + + TI DV++ TE S C C C + D Sbjct: 67 RGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVRD 126 Query: 121 VLTQYSIECLVRNRSS 136 L +I+ ++ +S Sbjct: 127 YLGSVTIQDILDRAAS 142 >gi|328544253|ref|YP_004304362.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326413995|gb|ADZ71058.1| Putative transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 155 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 74/142 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT RT+ +R LM+CA+++ R ++IA AC SE + +++ L + G + T RGR Sbjct: 1 MRLTMRTNLAMRTLMFCAVNSARTVRKAEIARACNASENHIAQVIHLLSQKGYLRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL ++I + V ++ E AECF CPL +C L + A+ AF+ Sbjct: 61 NGGIRLGMAMEEINVGTVFRSFEADVPFAECFQGVDNRCPLTAACRLRIAIVGAVGAFYA 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L S+ LV + +I Sbjct: 121 ALDGLSLADLVAGNRELHRILT 142 >gi|126729963|ref|ZP_01745775.1| rrf2 family protein [Sagittula stellata E-37] gi|126709343|gb|EBA08397.1| rrf2 family protein [Sagittula stellata E-37] Length = 161 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 74/131 (56%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +RVLMYCA H + +IA+ C SE L +++ L + G + T RGR GG+ L RPA Sbjct: 1 MRVLMYCAAHTERLVTKHEIAQVCNASENHLAQVINQLAQLGFLHTQRGRNGGLELARPA 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 +I I DV + E+ +AECFA CPL +C L +L KA N+F++ L +++ L Sbjct: 61 SEIVIGDVFRHLEQPVPLAECFADVDNTCPLTEACRLRDLLTKAANSFYETLDPITLDAL 120 Query: 131 VRNRSSIKKIF 141 V + + I Sbjct: 121 VCDNVPLLDII 131 >gi|302879682|ref|YP_003848246.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302582471|gb|ADL56482.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 132 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D +R L+ N P I+++AE C IS+ L K++ LV A +V + RGR Sbjct: 1 MQLTVSSDSALRTLICLGKKN-APVTIAEVAEQCQISKSTLMKVVMTLVGANLVVSERGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + A I++ VV+ E S + EC CPL+ C L VL A FF Sbjct: 60 NGGISLAQDAKDISVGSVVRLMENSLALVECMKDGTSTCPLLPKCRLKHVLYTAQENFFS 119 Query: 121 VLTQYSIECLVRN 133 L S+ L+R+ Sbjct: 120 TLDNTSLADLLRD 132 >gi|295111229|emb|CBL27979.1| transcriptional regulator, BadM/Rrf2 family [Synergistetes bacterium SGP1] Length = 161 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ T YG+R L + D P +S IA I +L ++ L ++ I+++VRG Sbjct: 1 MKLSTTTRYGLRALTDLCVQQQDAPVSVSDIARRQSIPVNYLEQLFAKLRRSNILKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RPA +IT+ +V+ A E C + C +C + + + Sbjct: 61 AQGGYLLARPAKEITLSEVIAALGEEILFGSCQSEKG--CANAATCSTFDLWNRLRISID 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 +L ++E L + +++ Sbjct: 119 GILDGTTLEDLAKKDRTLR 137 >gi|254853166|ref|ZP_05242514.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|300764439|ref|ZP_07074432.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] gi|258606518|gb|EEW19126.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|300514793|gb|EFK41847.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] Length = 138 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLVGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|304404495|ref|ZP_07386156.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304346302|gb|EFM12135.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 133 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 7/133 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + P + Q+AE +S +L KIL LVKAG+VE+ G Sbjct: 1 MKYSKATNYALHTMLYLMAATPNRPIGVQQLAERQDVSSTYLSKILTKLVKAGMVESASG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R +QI+ LD++ A E + + +C H CP + V+ +A Sbjct: 61 ANGGYRLKRDWEQISFLDIIHAIEGTASIFDCSFDHGPQCP------IQRVVLEAEQQME 114 Query: 120 DVLTQYSIECLVR 132 L+ ++ L + Sbjct: 115 QHLSNQTLAALAQ 127 >gi|269791825|ref|YP_003316729.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099460|gb|ACZ18447.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 146 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++T Y +R L ++ P +I++IAEA I FL IL L G VE++RGR Sbjct: 6 VNQKTQYALRALYELSVQYRAGPVKIARIAEAQRIPRKFLEVILSELKAMGYVESLRGRE 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP +I+I DV++ + +C + C L G C + +A A +V Sbjct: 66 GGYVLARPPWEISIGDVIRDVQGPLSPVDCLI-GRGGCRLSGQCSFRPLWARAARALEEV 124 Query: 122 LTQYSIECLVR 132 + + LV Sbjct: 125 YDGTTFQDLVD 135 >gi|291614714|ref|YP_003524871.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584826|gb|ADE12484.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans lithotrophicus ES-1] Length = 160 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I+E IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRFAVTAMVDLAMRGGKGPVTLAGISERQKISLSYLEQLFGKLRRNNVVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA++I+++D++ A +E+ +C + +C C + A Sbjct: 61 PGGGYCLARPANKISMVDIITAVDEALDATQC--GTRGNCADGKPCLTHDLWFGLNEAIH 118 Query: 120 DVLTQYSIECLVRNR 134 + L++ +++ LV + Sbjct: 119 EYLSKINLQQLVDGQ 133 >gi|239827836|ref|YP_002950460.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. WCH70] gi|239808129|gb|ACS25194.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70] Length = 138 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT DV++ E E + + + NA Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLEGPITPVEELDEEEP--------AKRELWIRIRNAVE 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E L + Sbjct: 113 EVLDNTTLEDLAK 125 >gi|254786630|ref|YP_003074059.1| iron-sulfur cluster assembly transcription factor IscR [Teredinibacter turnerae T7901] gi|237686389|gb|ACR13653.1| iron-sulfur cluster assembly transcription factor IscR [Teredinibacter turnerae T7901] Length = 164 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ I++ IS +L ++ L + +V +VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQRGPVSLADISKRQGISLSYLEQLFAKLRQNALVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A ++ + +V A ES C +C C + + Sbjct: 61 PGGGYKLSREASELFVAQIVDAVNESIDATSC--GGAGNCNQGDVCLTHYLWCDLSDQIH 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L+ S++ LV +R +++ Sbjct: 119 TFLSGISLQSLV-DRHDVQQ 137 >gi|331699002|ref|YP_004335241.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953691|gb|AEA27388.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia dioxanivorans CB1190] Length = 148 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ D+ +RVLM+ + I IA A +S L K+++ + AG+VET RGR Sbjct: 1 MRHTQHADFALRVLMFLRVAPGRRGSIGDIALAHRVSRNHLDKVVRRMSTAGLVETSRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R IT+ DV+++ E+ F V EC + C + G CG +V AL+++F Sbjct: 61 GGGVRLVRDPASITVGDVIRSMEDDFAVVECLGPARY-CRVAGVCGARTVFAAALDSYFA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL + +++ + N ++ Sbjct: 120 VLDRATLDDVAANDGGLRGALG 141 >gi|300087504|ref|YP_003758026.1| BadM/Rrf2 family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527237|gb|ADJ25705.1| transcriptional regulator, BadM/Rrf2 family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 147 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG R L+ A + D I IA IS +L ++ PLV A ++++VRG Sbjct: 1 MKLSTRARYGTRALLDLAQNYGDQVIPIKDIARRQQISLSYLEHLIGPLVDARLIQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG++L + + I + +VV E EC + + C C + A Sbjct: 61 AKGGLKLAKSPEAIKLSEVVSLLEGPIEPVECIHNPE-KCDRSLFCATRDIWDDMGRAIT 119 Query: 120 DVLTQYSIECLVRNRSS 136 +VL Q ++ LV + + Sbjct: 120 EVLGQTTLADLVSRQQA 136 >gi|262279220|ref|ZP_06057005.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262259571|gb|EEY78304.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 182 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 9/140 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113 G L R A +I+ LD+V A E + EC F D G C + +V+ + Sbjct: 64 GYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNHAPPDWATSGVCAVHAVMLQ 123 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A D L +++ + Sbjct: 124 AEKAMRDALGAHTLGDIADR 143 >gi|260429630|ref|ZP_05783607.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45] gi|260420253|gb|EEX13506.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45] Length = 150 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TDY +RV +Y H D IS+I A +S+ L K++Q LV+ G +++ RGR Sbjct: 1 MHLSKFTDYALRVCLYLGAHQDRVVPISEITRAHGLSQSNLMKVVQQLVEGGFLKSTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L RPA +I + +V + E + +C C L+G+CGL L +A NAF+ Sbjct: 61 SGGVTLARPAAEIRVGEVARFMEGDSGLVDC-----STCILIGACGLVRGLNEAKNAFYQ 115 Query: 121 VLTQYSIECLV 131 L + S+ V Sbjct: 116 SLDRSSLADAV 126 >gi|332702697|ref|ZP_08422785.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio africanus str. Walvis Bay] gi|332552846|gb|EGJ49890.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio africanus str. Walvis Bay] Length = 148 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ YG R+++ A++ + R+S +A +S +L K+++ L KAG V + RG Sbjct: 1 MRLSTRSRYGARMVLDMALYGNAGLVRLSDLAVRLDVSVKYLEKLVRELQKAGYVYSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I++ +VV+ E + C +I C V C + V A A F Sbjct: 61 PTGGHGLARDVAEISVGEVVRLLEGDHALTMCAQEDQI-CRHVDDCIMRKVWTDASEAMF 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 L + LVR + Sbjct: 120 AALDAVTFADLVREAKDKQ 138 >gi|262370584|ref|ZP_06063909.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262314384|gb|EEY95426.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 149 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY + P+ I+++A+A +SE L KI+ + K + T RGR Sbjct: 1 MQLNKFTDYALRILMYVSQPKALPHTIAELAQALQVSENHLMKIVHFMAKQQWIITARGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + ++V+ + + EC + C L +CGL +L +AL+ F+ Sbjct: 61 GGGIRLNPETLHLRLGEIVRVLQADQNIVEC---NTPPCVLRSNCGLKGILDQALDQFYH 117 Query: 121 VLTQYSIECLV 131 L QY++ ++ Sbjct: 118 SLDQYTLADVL 128 >gi|304311801|ref|YP_003811399.1| Regulator of the isc operon [gamma proteobacterium HdN1] gi|301797534|emb|CBL45754.1| Regulator of the isc operon [gamma proteobacterium HdN1] Length = 166 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P +++I+E IS +L ++ + + +V++VRG Sbjct: 1 MRLTTKGRYAVTAMLDLALHTGKGPVSLAEISERQGISISYLEQLFAKMRRKDLVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I + +++ A +ES C DC +C + ++ Sbjct: 61 PGGGYLLSRDGSTICVAEIIDAVDESVDATRCQGLG--DCQNGETCLTHDLWQELSIEIH 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L S++ LV +RS I++I Sbjct: 119 RFLGGISLKSLV-SRSQIQQI 138 >gi|296313979|ref|ZP_06863920.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria polysaccharea ATCC 43768] gi|296839409|gb|EFH23347.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria polysaccharea ATCC 43768] Length = 149 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAARINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRS 135 D L +++ ++ ++ Sbjct: 119 DYLGSVTLQSIIEQKT 134 >gi|296135927|ref|YP_003643169.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] gi|295796049|gb|ADG30839.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] Length = 154 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 64/129 (49%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD+G+R LM A + D ++A+ IS L K+LQ L G V+ RG Sbjct: 1 MKLTQFTDFGLRALMVLAENPDQSLNSKELAKILDISREHLVKVLQRLAAGGYVQNQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL + A +I + +VV+ E+ + EC C L C L +L A AF+ Sbjct: 61 NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120 Query: 121 VLTQYSIEC 129 L ++ Sbjct: 121 RLNTSTLAD 129 >gi|242278840|ref|YP_002990969.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121734|gb|ACS79430.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio salexigens DSM 2638] Length = 143 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ YG R+L+ A+H++ P A IS +L KIL+ L ++G ++ RG Sbjct: 1 MKLTTRSRYGARLLLDIALHSENGPVPSKDSARRENISLKYLEKILKILKESGYIKGKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++I++ + +A E + +C C C S+ A A + Sbjct: 61 PNGGNVLTMAPEEISLGKLTEALEGEDKILDC-DGDMTTCTRAAVCLRRSIWDDANQAMY 119 Query: 120 DVLTQYSIECLVRN 133 +L Y++ L+++ Sbjct: 120 KMLDSYTLADLIKD 133 >gi|163802753|ref|ZP_02196643.1| hypothetical protein 1103602000569_AND4_12699 [Vibrio sp. AND4] gi|159173460|gb|EDP58282.1| hypothetical protein AND4_12699 [Vibrio sp. AND4] Length = 141 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + +IT+ VV+ E + C C + +C L L +A AF Sbjct: 61 KNGGIRLLKAPQEITVGGVVRDLE-PLDLVNCSVEF---CHITPACRLKEKLAQAKMAFM 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L +IE L+R+ S + + Sbjct: 117 AELDGCTIEELLRDNSELLILLT 139 >gi|91227445|ref|ZP_01261809.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01] gi|91188595|gb|EAS74886.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01] Length = 141 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L++ A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIFLASLPEDELTSITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E + C C + +C L L KA +AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVDF---CHITPACRLKDKLAKAKSAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L +IE L+ + S + + Sbjct: 117 AELDDCTIESLLSDNSELLILL 138 >gi|296112834|ref|YP_003626772.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis RH4] gi|295920528|gb|ADG60879.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis RH4] gi|326561076|gb|EGE11441.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 7169] gi|326561502|gb|EGE11846.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 46P47B1] gi|326565370|gb|EGE15548.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 12P80B1] gi|326566701|gb|EGE16840.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 103P14B1] gi|326567535|gb|EGE17650.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis BC1] gi|326569382|gb|EGE19442.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis BC8] gi|326571418|gb|EGE21433.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis BC7] gi|326575299|gb|EGE25227.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis CO72] gi|326576615|gb|EGE26522.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis 101P30B1] gi|326577518|gb|EGE27398.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis O35E] Length = 168 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ +S IA+ IS +L ++ L K G+V + Sbjct: 1 MRLTTRGRYAVTALLDLAVQESRHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L +P + I I+ ++ A +ES +C K +C C + + Sbjct: 61 RGALGGYHLAKPLEDIDIMSIITAVDESINATQC--GGKGNCQDGAMCLTHDLWHNLSHH 118 Query: 118 FFDVLTQYSIECLVRNRS 135 L + ++ L+ ++ Sbjct: 119 IESYLKKVTLAQLLETKN 136 >gi|311031536|ref|ZP_07709626.1| transcription repressor [Bacillus sp. m3-13] Length = 138 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKNVGEGPLSLKTIAQTHDLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E E + + + +A Sbjct: 61 AYGGYILADEPEKITAGDIIRVLEGPISPVEVIEDEEP--------AKRELWIRIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 DVL +++ L Sbjct: 113 DVLDSTTLDDLAN 125 >gi|254449219|ref|ZP_05062668.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium HTCC5015] gi|198261196|gb|EDY85492.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium HTCC5015] Length = 158 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H P ++ IAE IS +L ++ L K G+V + RG Sbjct: 1 MKLTTKGRYAVTAMLDLALHCEQGPVALADIAERQAISLSYLEQLFGRLRKRGLVSSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A I++ V+ A +ES C C C + Sbjct: 61 PGGGYALNAEAGAISVSAVIDAVDESVDATSC--GGASSCQGSIRCLTHDLWTDLSQQIQ 118 Query: 120 DVLTQYSIECLVRNR 134 L S++ LV R Sbjct: 119 GFLDSISLQDLVDRR 133 >gi|149176060|ref|ZP_01854677.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797] gi|148845214|gb|EDL59560.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797] Length = 139 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LMY A +D ++ +AE IS + K++ L + G + +VRG Sbjct: 1 MQLTMQTDYALRTLMYLASQDDR-ATVANVAELFQISSHHVAKVVNQLSRLGYIRSVRGM 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L P ++I + DV++ E + + EC + + C + C L VL +A + Sbjct: 60 GGGIELAVPLEKIRLGDVIERFEGNLHLLECVGTENV-CIIQPFCKLKGVLAEAERVQLE 118 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L ++ + + +K I Sbjct: 119 YLNSVTLADVAPSHRQLKSI 138 >gi|307718953|ref|YP_003874485.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila DSM 6192] gi|306532678|gb|ADN02212.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila DSM 6192] Length = 155 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + Y IR ++ A+ + P I +IAE IS FL +I L KAGI+++VRG Sbjct: 1 MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKAGIIDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115 GG + RP + ITI D+ A +E + C C C L V ++ Sbjct: 61 PGGGFLISRPLESITIKDIFDAVDEGLGITPCTEEEGKSGTELCEKAERCLLYEVWKETA 120 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 + +++ L+ Sbjct: 121 SHLRQYFASITLKDLIDKAKK 141 >gi|325123611|gb|ADY83134.1| hypothetical protein BDGL_002548 [Acinetobacter calcoaceticus PHEA-2] Length = 147 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG--IVETVR 58 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+R Sbjct: 1 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKHKQEWIITIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+RL A + +V+ + + EC + C L CGL +L +AL +F Sbjct: 61 GKGGGIRLNPEALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 + L QY++ +++ S Sbjct: 118 YQSLDQYTLGEVLQQSKS 135 >gi|52081231|ref|YP_080022.1| negative regulator of riboflavin kinase [Bacillus licheniformis ATCC 14580] gi|52786611|ref|YP_092440.1| YrzC [Bacillus licheniformis ATCC 14580] gi|319644802|ref|ZP_07999035.1| YrzC protein [Bacillus sp. BT1B_CT2] gi|52004442|gb|AAU24384.1| negative regulator of riboflavin kinase [Bacillus licheniformis ATCC 14580] gi|52349113|gb|AAU41747.1| YrzC [Bacillus licheniformis ATCC 14580] gi|317392611|gb|EFV73405.1| YrzC protein [Bacillus sp. BT1B_CT2] Length = 138 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT D+++ E E + + + K +A Sbjct: 61 AYGGYILGEEPAAITAGDIIRVLEGPISPVEVLENEEP--------AKRELWIKIRDAVK 112 Query: 120 DVLTQYSIECLV 131 +VL ++E L Sbjct: 113 EVLDSTTLEDLA 124 >gi|144897308|emb|CAM74172.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 148 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ ++Y A H +D I+ IAEA I + FL IL L G + + +G+ Sbjct: 2 LSSKAKYGLKAMVYLARHADDGSVLIADIAEAESIPKKFLDAILLELKNRGYLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +PA QI + D+V+ + +C + DC C + +V+ + +A Sbjct: 62 GGYSLAKPAQQIMVGDIVRVLDGPLAPVQCVSRTAYRRCDDCRDEAGCAVRAVMGEVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +L ++ + Sbjct: 122 IAAILDNTTLADMA 135 >gi|313610249|gb|EFR85521.1| putative transcriptional regulator [Listeria monocytogenes FSL F2-208] Length = 138 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASGISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|167465258|ref|ZP_02330347.1| possible transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 139 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA+QIT +++ E + F + + ++ Sbjct: 61 AYGGYILSRPAEQITTGQIIRVLEGPISPVD-FEEEDDPAK-------RDLWIRIRDSIA 112 Query: 120 DVLTQYSIECLV 131 VL ++ L+ Sbjct: 113 QVLDSTTLASLI 124 >gi|116872023|ref|YP_848804.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740901|emb|CAK20021.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 138 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ A Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESKPHCLIGEVMNNAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|159186104|ref|NP_356355.2| hypothetical protein Atu4299 [Agrobacterium tumefaciens str. C58] gi|159141238|gb|AAK89140.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 179 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 9/141 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T +YG+ L++ A P +AE IS FL KI L KAGIV G + Sbjct: 3 QMTVGVEYGLHCLLWLASSPGAPLSSRDLAELQGISPSFLAKIFPKLEKAGIVSASEGIK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG L RP IT+L+VV E + +C F G C + +V+ Sbjct: 63 GGYLLARPPGDITVLEVVDTIEGRKPLFDCQEIRGRCAVFRQRPPSWATKGVCAIHAVML 122 Query: 113 KALNAFFDVLTQYSIECLVRN 133 +A A D L ++ + + Sbjct: 123 RAEKAMRDSLASQTLADIAGD 143 >gi|89900669|ref|YP_523140.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345406|gb|ABD69609.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 169 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 76/136 (55%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVLM+CA++ + I+++AE+ IS+ L K++ L + G+++T RGR Sbjct: 1 MRLTDYTDYTLRVLMFCALNPERSVTIAELAESHAISKNHLMKVVNDLARQGLLQTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +PA I I DVV+ TE F + ECF C L C L V A F Sbjct: 61 GGGLRLLKPAADIRIGDVVRQTETDFRLVECFDPGHNTCTLTAQCQLKQVFWTAKQNFLA 120 Query: 121 VLTQYSIECLVRNRSS 136 L + ++ + R + Sbjct: 121 ELDKVTLADVTCTRPA 136 >gi|291288301|ref|YP_003505117.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290885461|gb|ADD69161.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 143 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T ++ Y IR + + P ++QIAE IS +L +I L K+GIVE R Sbjct: 1 MKITTKSRYAIRSIFALVLMGGDTKPVALTQIAEHEDISRKYLEQIFIKLKKSGIVEGSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R I + +V+ A + +++C C SCG+ + Sbjct: 61 GAQGGYVLARNPSDIRLKEVIYAMDGPVNISDCTQEE--SCDNFSSCGINWLWSGLKKTV 118 Query: 119 FDVLTQYSIECL 130 D L +I+ L Sbjct: 119 DDYLDNITIQDL 130 >gi|23099471|ref|NP_692937.1| hypothetical protein OB2016 [Oceanobacillus iheyensis HTE831] gi|22777700|dbj|BAC13972.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 139 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A++ P + IA+ +SE +L ++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELALNYGQGPTSLKMIAKENNLSEHYLEQLASPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT DV++ E + E K S+ +A Sbjct: 61 AYGGYMLSREPKSITASDVLRVLEGPLTIVEGMEEEKP--------AQQSLWLSIRDAVK 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q +++ LV + + Sbjct: 113 DVLDQTTLQDLVDHEND 129 >gi|282882782|ref|ZP_06291389.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis 315-B] gi|300813432|ref|ZP_07093777.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297443|gb|EFA89932.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis 315-B] gi|300512449|gb|EFK39604.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 131 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + + ++ P + IA+ +SE +L ++ L K G+V +VRG Sbjct: 1 MKLSTKGRYGLMAMYRLSQNSGKGPMSLKDIADIENLSEAYLEQLFALLKKRGLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++I I D++ A E ++ C + +++C + C +L++ + Sbjct: 61 AGGGYELAKAPNEIHIGDIINALEGDIKLSCCDTNKRLECAKINGCPTKDILKELQSRME 120 Query: 120 DVLTQYSIECL 130 +V+ ++ + Sbjct: 121 EVMDSLTLADM 131 >gi|114331239|ref|YP_747461.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas eutropha C91] gi|114308253|gb|ABI59496.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha C91] Length = 155 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ AI H P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTALLDIAIRHGGGPVALADISERQRISLSYLEQLFSKLRQRKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D++++ D++ A +E +C K +C C + K F Sbjct: 61 PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWTKLNEIIF 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L ++E LV +S Sbjct: 119 DYLGNVTLERLVEEQSQ 135 >gi|209967102|ref|YP_002300017.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209960568|gb|ACJ01205.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 156 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 6/146 (4%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L++R Y +R ++ A + RI+ IA A I FL IL L KAG++++VRGR Sbjct: 8 LSQRCKYALRAAVHLAGLSEQEGCARIADIAAAENIPHKFLEAILLDLRKAGLLKSVRGR 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG RL +P + +++ D+++ E + C + DC C + + KA + Sbjct: 68 DGGYRLAKPPEHVSMGDIIRVVEGTIAPIRCASRNRFEPCEDCGNPDECVIRWAMVKARD 127 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 A +VL + ++ R R ++ + Sbjct: 128 AMAEVLDRCTLAEAARRRRTLGTPLD 153 >gi|281418573|ref|ZP_06249592.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|281407657|gb|EFB37916.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] Length = 147 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ +M A+++ + IAE ISE +L ++ L KA IV++++G Sbjct: 1 MKMSTKGRYGLQAMMDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L IT+ +++ E + V + + C V K + Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVD-IDDRDSEVSKEEKCINEFVWNKINKSID 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 V+ ++ L+R ++ Sbjct: 120 KVVDNITLGDLLREYQKLED 139 >gi|144898377|emb|CAM75241.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 140 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 3/130 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L+Y ++ + + + +I+E IS L KI++ L + G + TVRG+ Sbjct: 1 MKITQFTDYSLRLLIYLSMRREGVSTVREISEFYSISSEHLKKIVRRLSELGHIRTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R DQI + +++ +E + + C S CP+ G C L SV+ A +AF Sbjct: 61 HGGLMLAREPDQINLGALLRQSE-NLNLVPCHDSGDT-CPIFG-CKLRSVIEDARDAFLA 117 Query: 121 VLTQYSIECL 130 ++ + Sbjct: 118 AFDGKTLADI 127 >gi|262393041|ref|YP_003284895.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25] gi|269967699|ref|ZP_06181748.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B] gi|262336635|gb|ACY50430.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25] gi|269827677|gb|EEZ81962.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B] Length = 141 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L++ A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIFLASLPEDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL +PA +IT+ VV+ E + C C + +C L L KA +AF Sbjct: 61 KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVDF---CHITPACRLKDKLAKAKSAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L +IE L+ + S + + Sbjct: 117 AELDDCTIESLLSDNSELLILL 138 >gi|264678558|ref|YP_003278465.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Comamonas testosteroni CNB-2] gi|262209071|gb|ACY33169.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni CNB-2] Length = 148 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 TDY +R+LM+ A + IS++A+A ISE L K+ L G +ETVRG+ GG+RL Sbjct: 2 TDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGKGGGMRL 61 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 R QI I V++ E F + ECF + C L G C L +L+ AL++F L ++ Sbjct: 62 AREPQQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMAHLDGFT 120 Query: 127 IECLV 131 + L+ Sbjct: 121 LADLI 125 >gi|294637705|ref|ZP_06715982.1| iron-sulfur cluster assembly transcription factor IscR [Edwardsiella tarda ATCC 23685] gi|291089135|gb|EFE21696.1| iron-sulfur cluster assembly transcription factor IscR [Edwardsiella tarda ATCC 23685] Length = 177 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 13 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A +ES C C ++ R Sbjct: 73 PGGGYLLGKDAADIAVGAVITAVDESVDATRCQGKGGCQ--GGTRCLTHALWRDLSERIS 130 Query: 120 DVLTQYSIECLVRNRSSI 137 L S+ LV N+ + Sbjct: 131 GFLNNISLAELVNNQEVL 148 >gi|257455232|ref|ZP_05620467.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter aerosaccus SK60] gi|257447194|gb|EEV22202.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter aerosaccus SK60] Length = 204 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ + +S IA+ IS +L ++ L K G+V + Sbjct: 1 MRLTTRGRYAVTALLDLALQEQKHELAVSLSDIAKRQEISISYLEQLFSKLRKKGLVVST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG + +P ++I+I+ ++ A +ES C K +C C + Sbjct: 61 RGASGGYHIAKPINEISIMSIISAVDESVDARAC--EGKGNCQDGAMCLTHDLWNGLSEQ 118 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 + L+ +++ L+ NR I++I Sbjct: 119 IENYLSTVTLDTLI-NRQIIREI 140 >gi|15613822|ref|NP_242125.1| hypothetical protein BH1259 [Bacillus halodurans C-125] gi|10173875|dbj|BAB04978.1| BH1259 [Bacillus halodurans C-125] Length = 139 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPISLKSIAKEHDLSEHYLEQLIAPLRNAMLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A +IT D+++ E E + + + K +A Sbjct: 61 AYGGYMLAKEASEITAGDIIRVLEGPISPVEVMENEEP--------AKRDLWIKIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E L Sbjct: 113 EVLDSTTLEDLAN 125 >gi|217967652|ref|YP_002353158.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336751|gb|ACK42544.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum DSM 6724] Length = 138 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L R+ YG+R L+Y A + + P + +IAEA I +L +I++ L + G V Sbjct: 1 MKLPTRSRYGLRALIYIAKNQKEENPVSVRKIAEAEEIPLRYLERIMRILSQKGYVRAEV 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + I ILDVV+A E + +C H I C + C + + + Sbjct: 61 GAEGGYYLSMLPENIKILDVVEALEGRINLVDCL--HGIKCKRMAYCPTRPLWMEMTKSL 118 Query: 119 FDVLTQYSIECLVRNRSSIK 138 + L +Y++ +R IK Sbjct: 119 KETLAKYTLADFLREEEKIK 138 >gi|260575577|ref|ZP_05843575.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] gi|259022220|gb|EEW25518.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] Length = 130 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 47/127 (37%), Positives = 73/127 (57%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M+CA++ R +A+AC SE L +++ L + G + TVRGR GG+ L RP D+IT Sbjct: 1 MFCAVNPGKVVRKQDVAQACNASENHLAQVIHLLAQKGFLHTVRGRSGGLMLGRPVDEIT 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +V +A E + ECF+ H+ CPL+ SC L L KAL AF+ L ++ +VR Sbjct: 61 VGEVFRAFEATLPFTECFSQHENSCPLIDSCRLKCALVKALAAFYATLDALTLRDMVREN 120 Query: 135 SSIKKIF 141 ++ + Sbjct: 121 GDLEGLL 127 >gi|114765192|ref|ZP_01444336.1| rrf2 family protein [Pelagibaca bermudensis HTCC2601] gi|114542467|gb|EAU45494.1| rrf2 family protein [Roseovarius sp. HTCC2601] Length = 145 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 47/127 (37%), Positives = 69/127 (54%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M+CA + S+IA+ C SE L +++ L + G + T RGR GG+ L RPA+QI Sbjct: 1 MHCAANTGRLVTKSEIAKRCNASENHLAQVINQLAQLGYLHTQRGRNGGLELSRPAEQIR 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 I DV +A E +AECFA CPL +C L L A NAF+ L +++ L+ + Sbjct: 61 IGDVFRALEAPVPLAECFADVDNTCPLTEACRLKIALSDAANAFYATLDPITLDTLICDN 120 Query: 135 SSIKKIF 141 + + I Sbjct: 121 APLMDIL 127 >gi|313902381|ref|ZP_07835784.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter subterraneus DSM 13965] gi|313467312|gb|EFR62823.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter subterraneus DSM 13965] Length = 141 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + A P + ++A+A + E +L +++ PL K G+V++VRG Sbjct: 1 MQLSTRGRYGVRAMYELARRYGQGPVPLREVADAQQLPENYLEQLMAPLRKGGLVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R QIT+ D+V+ + P V V + A Sbjct: 61 AQGGYVLARDPAQITVADIVRLLDGPIGPET--DQEATGTPSVAD----PVWEEVRRAIT 114 Query: 120 DVLTQYSIECLVRNRSSIKK 139 VL ++ L R ++ Sbjct: 115 GVLEGTTLADLCRQAEERQR 134 >gi|328948431|ref|YP_004365768.1| BadM/Rrf2 family transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328448755|gb|AEB14471.1| transcriptional regulator, BadM/Rrf2 family [Treponema succinifaciens DSM 2489] Length = 142 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R Y +RV++ H D ++ IAE +S +L I+ LVKAG+VE +RG Sbjct: 1 MLISTRGRYALRVIIELCSHGKDEFVPLNVIAENQDVSLKYLESIVALLVKAGLVEGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG RL + AD+ ++ +++K TE + C + CP C + K Sbjct: 61 KKGGYRLTKDADEYSVGEILKLTEGTLAPVTCLEENAETCPRSAECKTLPMWEKLDTIIS 120 Query: 120 DVLTQYSIECLVRNRS 135 + L I L++ S Sbjct: 121 NYLYSVKISDLLKPES 136 >gi|90407535|ref|ZP_01215717.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3] gi|90311345|gb|EAS39448.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3] Length = 149 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDYG+R L+Y A + IS +A +S + K++ L K G ++ VRG Sbjct: 1 MQLTTFTDYGLRTLIYLAILPKGELADISSVANIYNVSRNHMVKVISKLSKLGYIDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL A +I + DV++ E S + C A C +VG+C L VL A NAF Sbjct: 61 KNGGIRLGIDAHKIFLGDVIQNME-SMNIVNCNAGF---CHIVGACQLKGVLASATNAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L +++I LV + + + Sbjct: 117 AELNKHTILSLVEDNVPLVNLLG 139 >gi|78355271|ref|YP_386720.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217676|gb|ABB37025.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 199 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y R+L+ H D P + +A+ IS F+ K+++PL +AG+VE+VRG Sbjct: 1 MRISASSHYASRILVMLTRHADEAPIPAAALADRSGISIKFVEKLIRPLKQAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +QI++ DVV+A E + C + C SC + A Sbjct: 61 ATGGHMLAMRPEQISLGDVVRAMEGGIDLTHCCDDPE-RCRSKESCRTRQMWSGVSRALE 119 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ L+ + + Sbjct: 120 RTLDAITLLDLLNDPAP 136 >gi|152976812|ref|YP_001376329.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025564|gb|ABS23334.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus NVH 391-98] Length = 138 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAKAHDLSEHYLEQLISPLRNARLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT DV++ E V E + + + +A Sbjct: 61 AYGGYVLSDQPANITAGDVIRVLEGPISVVEMLEEEEP--------AQRQLWMRVRDAVQ 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E LVR Sbjct: 113 EVLDSTTLEDLVR 125 >gi|299822827|ref|ZP_07054713.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816356|gb|EFI83594.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 148 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ V + A + P + IAEA +SE +L +++ PL AGIV+++RG Sbjct: 8 MKITTKGRYGLTVTLELARQVGNGPISLRSIAEAKGLSEHYLEQLIGPLRNAGIVKSIRG 67 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT DV++ E + E + + + + NA Sbjct: 68 AYGGYVLNHDPSEITAGDVIRTLEGPIVLVEGMENEES--------AQRELWTRMRNAVR 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL ++ L+ + + + + Sbjct: 120 DVLDNTTLSDLLAHSENERAL 140 >gi|304407560|ref|ZP_07389212.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304343511|gb|EFM09353.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 139 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMMELSAKFGEGPISLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ADQIT DV++ E + + + ++ Sbjct: 61 AYGGYILSKAADQITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112 Query: 120 DVLTQYSIECLV 131 VL ++ LV Sbjct: 113 SVLDSTTLGDLV 124 >gi|330992598|ref|ZP_08316546.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329760797|gb|EGG77293.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 145 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR L+Y + I +IA+ IS+ L K++ L G+V RGR Sbjct: 1 MRLTLHTDYSIRALIYLGQNPGRRVAIQEIADTHRISQNHLVKVINRLSTNGVVLARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGV L QI I DVV+ E + C C L +C L + K++NAF Sbjct: 61 NGGVELAHTPRQIVIGDVVRLMESDVSAIVSCIPGSGQQCILADACRLRKLFSKSMNAFM 120 Query: 120 DVLTQYSIECLVRN 133 VL + ++ ++ + Sbjct: 121 AVLDRLTLHDMLCD 134 >gi|294340149|emb|CAZ88521.1| putative Transcriptional regulator [Thiomonas sp. 3As] Length = 154 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 63/129 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD+G+R LM A + D ++A IS L K+LQ L G V+ RG Sbjct: 1 MKLTQFTDFGLRALMVLAENPDQSLNSKELARILDISREHLIKVLQRLAAGGYVQNQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL + A +I + +VV+ E+ + EC C L C L +L A AF+ Sbjct: 61 NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120 Query: 121 VLTQYSIEC 129 L ++ Sbjct: 121 RLNTSTLAD 129 >gi|77918038|ref|YP_355853.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77544121|gb|ABA87683.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 154 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ T+Y IR +++ A I I+ FL KILQPL+K GIV + RG Sbjct: 1 MIITRATEYAIRAVLFMATQPRGETVLKKDICREQEITPAFLTKILQPLIKQGIVGSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + IT+LDV+KA E ++ C A +C +C + V R+A Sbjct: 61 IGGGFYLAKDPADITLLDVIKAEEGPIYLNLCLAEE-TNCNREPTCPVNRVWREARTQLL 119 Query: 120 DVLTQYSIECLVR 132 VL +YS L R Sbjct: 120 AVLDRYSFADLCR 132 >gi|30022474|ref|NP_834105.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|30264468|ref|NP_846845.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42783527|ref|NP_980774.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47529926|ref|YP_021275.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47566586|ref|ZP_00237408.1| RRF2 family protein [Bacillus cereus G9241] gi|49187289|ref|YP_030541.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49478626|ref|YP_038448.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141107|ref|YP_085720.1| transcriptional regulator [Bacillus cereus E33L] gi|65321765|ref|ZP_00394724.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] gi|118479556|ref|YP_896707.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|167636502|ref|ZP_02394799.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167638649|ref|ZP_02396925.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170689641|ref|ZP_02880823.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|177653236|ref|ZP_02935488.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190566990|ref|ZP_03019906.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196034450|ref|ZP_03101859.1| rrf2 family protein [Bacillus cereus W] gi|196039239|ref|ZP_03106545.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|196044851|ref|ZP_03112085.1| rrf2 family protein [Bacillus cereus 03BB108] gi|206969679|ref|ZP_03230633.1| rrf2 family protein [Bacillus cereus AH1134] gi|206976049|ref|ZP_03236959.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217961888|ref|YP_002340458.1| rrf2 family protein [Bacillus cereus AH187] gi|218235656|ref|YP_002369208.1| rrf2 family protein [Bacillus cereus B4264] gi|218899567|ref|YP_002447978.1| rrf2 family protein [Bacillus cereus G9842] gi|218905593|ref|YP_002453427.1| rrf2 family protein [Bacillus cereus AH820] gi|222097841|ref|YP_002531898.1| transcriptional regulator [Bacillus cereus Q1] gi|225866380|ref|YP_002751758.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227817177|ref|YP_002817186.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|228902926|ref|ZP_04067067.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222] gi|228910234|ref|ZP_04074052.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200] gi|228917032|ref|ZP_04080592.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923150|ref|ZP_04086441.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929443|ref|ZP_04092464.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935719|ref|ZP_04098532.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941566|ref|ZP_04104115.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948112|ref|ZP_04110396.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954683|ref|ZP_04116706.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960670|ref|ZP_04122315.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967473|ref|ZP_04128502.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228974496|ref|ZP_04135063.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981090|ref|ZP_04141391.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407] gi|228987650|ref|ZP_04147764.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228993136|ref|ZP_04153058.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228999185|ref|ZP_04158767.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17] gi|229006733|ref|ZP_04164367.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4] gi|229032048|ref|ZP_04188031.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271] gi|229048106|ref|ZP_04193679.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676] gi|229071907|ref|ZP_04205118.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185] gi|229081663|ref|ZP_04214158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2] gi|229086961|ref|ZP_04219118.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44] gi|229093469|ref|ZP_04224572.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42] gi|229098870|ref|ZP_04229806.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29] gi|229105032|ref|ZP_04235686.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28] gi|229111871|ref|ZP_04241417.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15] gi|229117895|ref|ZP_04247257.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3] gi|229123939|ref|ZP_04253131.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201] gi|229129679|ref|ZP_04258647.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4] gi|229141135|ref|ZP_04269677.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26] gi|229146969|ref|ZP_04275333.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24] gi|229152602|ref|ZP_04280791.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550] gi|229158014|ref|ZP_04286085.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342] gi|229163347|ref|ZP_04291299.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803] gi|229175072|ref|ZP_04302590.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3] gi|229180674|ref|ZP_04308014.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W] gi|229186638|ref|ZP_04313799.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1] gi|229192610|ref|ZP_04319571.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876] gi|229198525|ref|ZP_04325229.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293] gi|229600467|ref|YP_002868685.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254684154|ref|ZP_05148014.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254724675|ref|ZP_05186458.1| rrf2 family protein [Bacillus anthracis str. A1055] gi|254736501|ref|ZP_05194207.1| rrf2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254741539|ref|ZP_05199226.1| rrf2 family protein [Bacillus anthracis str. Kruger B] gi|254751362|ref|ZP_05203399.1| rrf2 family protein [Bacillus anthracis str. Vollum] gi|254757694|ref|ZP_05209721.1| rrf2 family protein [Bacillus anthracis str. Australia 94] gi|296504891|ref|YP_003666591.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|300119220|ref|ZP_07056917.1| rrf2 family protein [Bacillus cereus SJ1] gi|301055906|ref|YP_003794117.1| putative transcriptional regulator [Bacillus anthracis CI] gi|29898032|gb|AAP11306.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|30259126|gb|AAP28331.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42739456|gb|AAS43382.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47505074|gb|AAT33750.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556616|gb|EAL14948.1| RRF2 family protein [Bacillus cereus G9241] gi|49181216|gb|AAT56592.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49330182|gb|AAT60828.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974576|gb|AAU16126.1| probable transcriptional regulator [Bacillus cereus E33L] gi|118418781|gb|ABK87200.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] gi|167513497|gb|EDR88867.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167528095|gb|EDR90892.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170666411|gb|EDT17192.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172081518|gb|EDT66590.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190561981|gb|EDV15950.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|195992992|gb|EDX56951.1| rrf2 family protein [Bacillus cereus W] gi|196024339|gb|EDX63012.1| rrf2 family protein [Bacillus cereus 03BB108] gi|196029866|gb|EDX68467.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206735367|gb|EDZ52535.1| rrf2 family protein [Bacillus cereus AH1134] gi|206745801|gb|EDZ57198.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217066112|gb|ACJ80362.1| rrf2 family protein [Bacillus cereus AH187] gi|218163613|gb|ACK63605.1| rrf2 family protein [Bacillus cereus B4264] gi|218539499|gb|ACK91897.1| rrf2 family protein [Bacillus cereus AH820] gi|218541342|gb|ACK93736.1| rrf2 family protein [Bacillus cereus G9842] gi|221241899|gb|ACM14609.1| probable transcriptional regulator [Bacillus cereus Q1] gi|225789058|gb|ACO29275.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227007748|gb|ACP17491.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|228585028|gb|EEK43142.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293] gi|228590917|gb|EEK48775.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876] gi|228596897|gb|EEK54556.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1] gi|228602819|gb|EEK60300.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W] gi|228608440|gb|EEK65744.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3] gi|228620128|gb|EEK77002.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803] gi|228625467|gb|EEK82223.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342] gi|228630863|gb|EEK87503.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550] gi|228636568|gb|EEK93034.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24] gi|228642413|gb|EEK98702.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26] gi|228653796|gb|EEL09666.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4] gi|228659241|gb|EEL14889.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201] gi|228665552|gb|EEL21032.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3] gi|228671627|gb|EEL26925.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15] gi|228678409|gb|EEL32632.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28] gi|228684543|gb|EEL38485.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29] gi|228689940|gb|EEL43744.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42] gi|228696337|gb|EEL49165.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44] gi|228701667|gb|EEL54158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2] gi|228711203|gb|EEL63167.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185] gi|228723261|gb|EEL74633.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676] gi|228729293|gb|EEL80287.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271] gi|228754594|gb|EEM04005.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4] gi|228760802|gb|EEM09766.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17] gi|228766595|gb|EEM15236.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228772110|gb|EEM20562.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778631|gb|EEM26897.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407] gi|228785213|gb|EEM33225.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792250|gb|EEM39823.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228799034|gb|EEM46006.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805010|gb|EEM51606.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811470|gb|EEM57807.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228818122|gb|EEM64198.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823957|gb|EEM69776.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830231|gb|EEM75847.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836529|gb|EEM81879.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842639|gb|EEM87727.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849398|gb|EEM94234.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200] gi|228856710|gb|EEN01229.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222] gi|229264875|gb|ACQ46512.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|296325943|gb|ADH08871.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|298723440|gb|EFI64185.1| rrf2 family protein [Bacillus cereus SJ1] gi|300378075|gb|ADK06979.1| probable transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324328301|gb|ADY23561.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942180|gb|AEA18076.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 138 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT DV++ E V E + + + +A Sbjct: 61 AYGGYVLSDQPANITAGDVIRVLEGPISVVEMIEEEEP--------AQRQLWMRVRDAVQ 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E LVR Sbjct: 113 EVLDSTTLEDLVR 125 >gi|16331737|ref|NP_442465.1| hypothetical protein slr0846 [Synechocystis sp. PCC 6803] gi|7429419|pir||S75800 hypothetical protein slr0846 - Synechocystis sp. (strain PCC 6803) gi|1673323|dbj|BAA10535.1| slr0846 [Synechocystis sp. PCC 6803] Length = 157 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y ++ L+ A+ D P + IAE I +L K+L L +AGIV RG Sbjct: 11 MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L + DQI++ ++ A EES F + D L SV R+ F Sbjct: 71 VRGGYQLAQAPDQISLGQILAALEESLEP---FPQYGDDQSLAEDWVTLSVWRQLHQKFV 127 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 L ++ L + S + G Sbjct: 128 KALYSITLADLYYDARSWQAAQGEG 152 >gi|332654223|ref|ZP_08419967.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] gi|332517309|gb|EGJ46914.1| iron-sulfur cluster assembly transcription factor IscR [Ruminococcaceae bacterium D16] Length = 139 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RV++ A + IA+ +SE +L I++ L + G + VRG Sbjct: 3 MMVSTKGRYALRVMIDLAQQGGAGYIPLKDIAQRQGLSEKYLESIVKLLARNGDLAGVRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R ++ +++ TE C A C C + K Sbjct: 63 KGGGYRLTRAPKDYSVGAILRLTEGKLAPVNCQALEG-QCENAAQCRTRPLWEKLDAMVE 121 Query: 120 DVLTQYSIECLVRNRSS 136 + L ++ L+ + Sbjct: 122 EYLDGVTLADLLEGPGA 138 >gi|182677317|ref|YP_001831463.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633200|gb|ACB93974.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 180 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YGI L++ D I ++AE IS FL KI L KAGIV G R Sbjct: 3 HLTISVEYGIHCLLWLVGSGDTAMSIRELAELQGISPSFLAKIFPKLEKAGIVAASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL R ++I+ LD+V A E + +C FA + + G C + V+ Sbjct: 63 GGYRLGRSPEEISFLDIVDAIEGHKPLFDCQEVRERCALFAGKPPEWAMKGVCAIHGVML 122 Query: 113 KALNAFFDVLTQYSIECLVR 132 +A A D L ++ + Sbjct: 123 QAEKAMRDSLASQTLADVAA 142 >gi|269961409|ref|ZP_06175773.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833786|gb|EEZ87881.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 141 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + + I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKEELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + +IT+ VV+ E + C C + +C L L KA AF Sbjct: 61 KNGGIRLLKAPKEITVGGVVRDLE-PLDLVNCSVEF---CHITPACRLKEKLAKAKMAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L +IE L+ + S + + Sbjct: 117 AELDGCTIEELLSDNSELLILL 138 >gi|51241738|dbj|BAD36774.1| CDG1D [Gluconacetobacter xylinus] Length = 138 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR L+Y + I +IA+ IS+ L K++ L G++ RGR Sbjct: 1 MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAQTHSISQNHLVKVVNRLSSNGVILARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L QI I D+++ E + C + C L +C L + K++NAF Sbjct: 61 SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLRGLFAKSVNAFL 120 Query: 120 DVLTQYSIECLVRNRSSI 137 VL + ++ ++ + Sbjct: 121 SVLDRITLHDILHEPKKL 138 >gi|184158243|ref|YP_001846582.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183209837|gb|ACC57235.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] Length = 182 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113 G L R A +I+ LD+V A E + EC F + D G C + +V+ + Sbjct: 64 GYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQ 123 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A D L +++ + Sbjct: 124 AEKAMRDALGAHTLGDIADR 143 >gi|294501358|ref|YP_003565058.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium QM B1551] gi|295706705|ref|YP_003599780.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium DSM 319] gi|294351295|gb|ADE71624.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium QM B1551] gi|294804364|gb|ADF41430.1| transcriptional regulator of cysteine biosynthesis [Bacillus megaterium DSM 319] Length = 138 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+ +SE +L +++ PL AG+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKRFGEGPISLKTIAQTHDLSEHYLEQLISPLRNAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT D++ E E + + + +A Sbjct: 61 AYGGYILAHEPANITSGDIISVLEGPISPVEGIEDEEP--------AKRELWIRIRDAVK 112 Query: 120 DVLTQYSIECLVRNRSS 136 +VL ++E L + Sbjct: 113 EVLDSTTLEDLANHSDD 129 >gi|237747468|ref|ZP_04577948.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229378819|gb|EEO28910.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 155 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 4/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A H + P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVMAMIDLARHQKNGPVSLAGISERQDISVAYLEQLFSKLRRGNLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 GG L A ITI D+V A +E V C +C C ++ Sbjct: 61 PGGGYLLSGNAGDITIADIVFAVDEPLDVTRC--GGNGNCAKGSVKCVTHNLWASLNERI 118 Query: 119 FDVLTQYSIECLVRNRSSI 137 D L + L S++ Sbjct: 119 IDYLESVLLSDLSEMDSAL 137 >gi|222055544|ref|YP_002537906.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221564833|gb|ACM20805.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 153 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 6/147 (4%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ L+Y + P I+ +AE I + FL IL L GI+ + +G+ Sbjct: 2 ISKKTKYALKALIYLSRTKKGEPVLIADLAEDEKIPKKFLELILLTLKNNGILHSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I++ V++ E C + +C +CG+ V++ +A Sbjct: 62 GGYSLGKLPREISMGSVIRMLEGPLAPVPCVSETAYSKCTECEDETTCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 +L +++ ++ R+ + G Sbjct: 122 ITQILDHTTLQDVLE-RTERAALLEKG 147 >gi|302036962|ref|YP_003797284.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300605026|emb|CBK41359.1| putative HTH-type transcriptional regulator, rrf2 family [Candidatus Nitrospira defluvii] Length = 141 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 7/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K+++YG+R L+ + + +IAE I FL +IL L +AG++ + RG Sbjct: 1 MKFSKKSEYGLRALLELCETYGGRVLQRHEIAERQNIPVEFLEQILLALKRAGLLASRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLV--GSCGLTSVLRK 113 RGG L + + IT+ V++ + C + DCP SC L + + Sbjct: 61 VRGGYSLIKSPEDITLGQVIRILDGPLAPISCVSKTAYQKCADCPYAAKPSCPLQQAMGE 120 Query: 114 ALNAFFDVLTQYSIE 128 +A ++L Y++ Sbjct: 121 VRDAIANILDHYTLS 135 >gi|310779512|ref|YP_003967845.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] gi|309748835|gb|ADO83497.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] Length = 140 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ R YG+R L+Y A N D RI +I++ IS +L +IL L K I+E Sbjct: 1 MKISTRIRYGLRALVYIAEQNRDFDRLVRIKEISKDQNISVQYLEQILFKLKKENIIEGK 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L +I + + + + + +C + + + C + + + NA Sbjct: 61 RGPNGGYKLIGDPKKINVFRLYEILDSDVKIVDCNENTENKSCVEEKCRTSCLWSRLDNA 120 Query: 118 FFDVLTQYSIECLVRNRSSI 137 D+L + +++ L+ N+ + Sbjct: 121 LSDILKETTLDDLINNKEMM 140 >gi|317062001|ref|ZP_07926486.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185] gi|313687677|gb|EFS24512.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185] Length = 152 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R Sbjct: 13 MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 72 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG RL + +IT+ + K +E V +C HK C +CG T + K + Sbjct: 73 GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 131 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + ++ ++N+ I Sbjct: 132 AMTKILKETTLNEFIKNKDMI 152 >gi|257467708|ref|ZP_05631804.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185] Length = 140 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R Sbjct: 1 MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG RL + +IT+ + K +E V +C HK C +CG T + K + Sbjct: 61 GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 119 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + ++ ++N+ I Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140 >gi|194017204|ref|ZP_03055816.1| YrzC [Bacillus pumilus ATCC 7061] gi|194011072|gb|EDW20642.1| YrzC [Bacillus pumilus ATCC 7061] Length = 164 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL A +V+++RG Sbjct: 27 KISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRGA 86 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L ++IT D+++ E E + + ++ + +A D Sbjct: 87 YGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEEP--------AKRALWIRIRDAVKD 138 Query: 121 VLTQYSIECLV 131 VL ++E L Sbjct: 139 VLDNTTLEDLA 149 >gi|237746485|ref|ZP_04576965.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229377836|gb|EEO27927.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 154 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R ++ + + + + IS +L +I L KAG++++VRG Sbjct: 1 MKISTKGRYALRFMIDLVQYGNGNYISLKDVIARQHISPKYLEQIATALGKAGLIQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R + TI D+++ E + C + +CP +C + Sbjct: 61 PQGGYKLSRQPESYTIGDILRPIEGNLACVACLETTPNECPQYANCTAVRFWEGLHHVVL 120 Query: 120 DVLTQYSIECLVRNR 134 + L +++ L R Sbjct: 121 NYLNSTNLKELADMR 135 >gi|82701827|ref|YP_411393.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409892|gb|ABB74001.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira multiformis ATCC 25196] Length = 172 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ A+ P +++I++ IS +L ++ L G+V++VRG Sbjct: 1 MRLTTKGRFAVTALLDLALQRQTRPVTLAEISQRQQISLSYLEQLFAKLRSRGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + Q+++ +++ A +E +C + K +C C + K F Sbjct: 61 PGGGYCLAKDMGQVSVAEIILAVDEPIDSTQC--NGKENCHNDRKCMTHDLWTKLNELIF 118 Query: 120 DVLTQYSIECLVR 132 D L +++ LV Sbjct: 119 DHLGAVTLKQLVD 131 >gi|320662819|gb|EFX30151.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7 str. USDA 5905] Length = 162 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R N Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSNRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|170767352|ref|ZP_02901805.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia albertii TW07627] gi|170123686|gb|EDS92617.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia albertii TW07627] Length = 162 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|260598923|ref|YP_003211494.1| DNA-binding transcriptional regulator IscR [Cronobacter turicensis z3032] gi|260218100|emb|CBA32871.1| HTH-type transcriptional regulator iscR [Cronobacter turicensis z3032] Length = 162 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A QI + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|242277828|ref|YP_002989957.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242120722|gb|ACS78418.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio salexigens DSM 2638] Length = 141 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y R+L+ A+ +D P + + ++E+ I+ F+ +IL+PL KAG++ +VRG Sbjct: 1 MKLSARARYATRLLLDLALRQSDTPRKTTLLSESTGITVQFIEQILRPLKKAGLIVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I+I ++V+ E + +C A I C +C V ++ Sbjct: 61 ATGGHILDKDPSTISIGEIVRIMEGGINLTDCVADESI-CARSATCKTRKVWVRSSKVLE 119 Query: 120 DVLTQYSIECLVRNRSS 136 + L SI L+ N S Sbjct: 120 EELDSISIADLMDNPDS 136 >gi|153835424|ref|ZP_01988091.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi HY01] gi|156972466|ref|YP_001443373.1| transcriptional repressor NsrR [Vibrio harveyi ATCC BAA-1116] gi|189030890|sp|A7MX86|NSRR_VIBHB RecName: Full=HTH-type transcriptional repressor nsrR gi|148868029|gb|EDL67214.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi HY01] gi|156524060|gb|ABU69146.1| hypothetical protein VIBHAR_00086 [Vibrio harveyi ATCC BAA-1116] Length = 141 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL + +IT+ VV+ E + C C + +C L L KA AF Sbjct: 61 KNGGIRLMKAPQEITVGGVVRDLE-PLDLVNCSVEF---CHITPACRLKEKLAKAKLAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L +IE L+ + S + + Sbjct: 117 AELDDCTIEELLSDNSELLILL 138 >gi|289433915|ref|YP_003463787.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170159|emb|CBH26699.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 138 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +PA I+ LDV++A E C K C + V+ A Sbjct: 61 VNGGYKLAKPASNISFLDVIQAIEGKTAFFHC--DPKNHAETKPHCLIGEVMGNAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ +I +V Sbjct: 119 DYLSKQTIGSIV 130 >gi|256826980|ref|YP_003150939.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] gi|256583123|gb|ACU94257.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] Length = 152 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+ + A H P + + A+ IS ++ ++ + G++ + RG Sbjct: 1 MKISTKGRYALRLAIDVAQHQLAGPVPLRESAKRQGISVKYMEQLAAQMTHGGLLTSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R IT D+++ +E + C CP G+C + A Sbjct: 61 AHGGYRLARLDTDITAGDILRVSEGGYAPVACLEDDFGICPHRGACETIAFWEGLDQAIE 120 Query: 120 DVLTQYSIECLV 131 + ++ LV Sbjct: 121 RYVDSVTLADLV 132 >gi|218514457|ref|ZP_03511297.1| iron-responsive transcriptional regulator [Rhizobium etli 8C-3] Length = 146 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 67/118 (56%), Positives = 84/118 (71%), Gaps = 3/118 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNA 117 GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV S L A A Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDS--LRPEFGAAQGA 116 >gi|171057733|ref|YP_001790082.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775178|gb|ACB33317.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii SP-6] Length = 177 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+ P ++ I+ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLALREHTGPVALAAISARQQISLSYLEQLFGKLRRHELVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A+ IT+ D++ A +E+ C G C + Sbjct: 61 PGGGYSLGRKAEDITVADIIVAVDEAIDSTGCGGGENCMGDDTGRCMTHDLWTSLNAKML 120 Query: 120 DVLTQYSIECLVRNR 134 + L S+ LV+++ Sbjct: 121 EYLHSISLRSLVQDQ 135 >gi|300692019|ref|YP_003753014.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum PSI07] gi|299079079|emb|CBJ51741.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor [Ralstonia solanacearum PSI07] Length = 191 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 6/141 (4%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG Sbjct: 1 MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNAF 118 GG L R AD +T+ D++ A +E +C K +C G C + Sbjct: 61 GGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQKM 118 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + L S++ LV + + Sbjct: 119 VEYLDSVSLQNLVDQQRERQP 139 >gi|306820338|ref|ZP_07453977.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551667|gb|EFM39619.1| iron-sulfur cluster assembly transcription regulator IscR [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 142 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y ++ + AI + + P +S I+E +SEL+L +I L K IV+++RG Sbjct: 1 MIISTKGRYALKAVFELAIADKNTPLPLSMISEKSGLSELYLEQIFSVLKKNNIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I++ +V+K E A+C C ++ C + A Sbjct: 61 AQGGYFLTKDTKDISVGEVIKPLEGDLSPAKCLEEDGY-CDMLDRCPTYMIWDNIKKAID 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DV+ ++ +V K+ Sbjct: 120 DVVDNTTLADMVDEYYKKHKL 140 >gi|87310930|ref|ZP_01093056.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM 3645] gi|87286445|gb|EAQ78353.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM 3645] Length = 138 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LM+ A +D ++ +A+ IS + K++ L K G V ++RG Sbjct: 1 MKLTTQTDYALRTLMFLATRSDR-ANVANVAQLFGISVHHVAKVVNSLAKYGYVRSIRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R +I + +VV+ E S + +C + I C + C L VL +A Sbjct: 60 GGGIELARQPREIRLGEVVERFEGSTHLLDCIDTEDI-CAIQSFCKLKGVLAEAERVQRA 118 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L ++ + ++ + Sbjct: 119 YLDSVTLADVAPTSRQLQLL 138 >gi|298505456|gb|ADI84179.1| transcriptional regulator, Rrf2 family [Geobacter sulfurreducens KN400] Length = 153 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ ++Y A D P I+ +A I + FL IL L AG++++ +G+ Sbjct: 2 ISKKTKYALKAMLYLAREQDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L +P +I++ +++ E +C + +C SCG+ V++ +A Sbjct: 62 GGYYLAQPPREISMGRIIRILEGPLAPVQCVSETSYARCEECDDEWSCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRN 133 +L ++ ++ Sbjct: 122 MATILDGATLADVLER 137 >gi|118579599|ref|YP_900849.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502309|gb|ABK98791.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus DSM 2379] Length = 134 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT++ +Y IR ++Y A D +S+IA A + + FL KI Q K G+V + RG Sbjct: 2 MELTRKGEYAIRGIVYLASRPGDQVCLLSEIAAAVDVPQTFLAKIFQQFSKIGLVRSYRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ++IT+L+VV+A E C +C +C + V + + Sbjct: 62 TGGGFMLGRAPEKITLLEVVEAVEGPVVPNRCVIG-AGECDRSVACRVHPVWIEVQHEVR 120 Query: 120 DVLTQYSIECLV 131 +L + +++ L Sbjct: 121 AILARVTLKELA 132 >gi|294668749|ref|ZP_06733842.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309266|gb|EFE50509.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 147 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + +++ I+E IS +L ++ L +A +V+++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQNGAVKLNDISERQNISLSYLEQLFGKLRRAKLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L AD+I+I ++ A E+ C S K +C C + Sbjct: 61 PGGGYVLAAAADEISIAQIITAAEDRLDATLC--SSKANCHNGAPCLTHDLWENLNRTIN 118 Query: 120 DVLTQYSIECLVRNRS 135 L+ +++ ++ + Sbjct: 119 QYLSSVTLQTVLNQKD 134 >gi|317128228|ref|YP_004094510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Bacillus cellulosilyticus DSM 2522] gi|315473176|gb|ADU29779.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cellulosilyticus DSM 2522] Length = 139 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IA +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALAKKYGEGPISLKSIAIDHDLSEHYLEQLIAPLRNATLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +QIT D+++ E E + + K +A Sbjct: 61 AYGGYMLSKSPEQITAGDIIRVLEGPITPVEVVDDEEP--------AKRDLWIKIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 DVL ++E L Sbjct: 113 DVLDSTTLEDLAN 125 >gi|167562509|ref|ZP_02355425.1| Rrf2 family protein [Burkholderia oklahomensis EO147] gi|167569690|ref|ZP_02362564.1| Rrf2 family protein [Burkholderia oklahomensis C6786] Length = 165 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ +VV+ TE F + CFA C + +C L V A +A Sbjct: 61 NGGLRLNAQSAALTVGEVVRKTENDFALVGCFADESESHRSCVIQSACRLKGVFAAARDA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L + S + + Sbjct: 121 FFAELDKHTIGELSQPASQLAALLG 145 >gi|71066031|ref|YP_264758.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039016|gb|AAZ19324.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter arcticus 273-4] Length = 170 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ D +S IA+ IS +L ++ L K G+V ++ Sbjct: 1 MRLTTRGRYAVTALLDLALQTSQQDSAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L +P DQI ++ ++ A +ES +C + DC C + N Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC--EGRGDCQGGTMCLTHDLWCALSNH 118 Query: 118 FFDVLTQYSIECLVR 132 L ++ L+ Sbjct: 119 VEQYLKNITLAQLLN 133 >gi|6136580|sp|Q55433|Y846_SYNY3 RecName: Full=Putative HTH-type transcriptional regulator slr0846 Length = 147 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y ++ L+ A+ D P + IAE I +L K+L L +AGIV RG Sbjct: 1 MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L + DQI++ ++ A EES F + D L SV R+ F Sbjct: 61 VRGGYQLAQAPDQISLGQILAALEESLEP---FPQYGDDQSLAEDWVTLSVWRQLHQKFV 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 L ++ L + S + G Sbjct: 118 KALYSITLADLYYDARSWQAAQGEG 142 >gi|329115226|ref|ZP_08243981.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] gi|326695669|gb|EGE47355.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001] Length = 169 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 7/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H + I +IA ISE L KI+ L + G V+T+RGR Sbjct: 13 MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFVDTLRGR 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115 GG+ L R + I I DVV+ TE+ + C + +C L +C L L +AL Sbjct: 73 GGGLMLGRAPEDIRIGDVVRHTEDDMALVSCMSPSPGVPGSAECLLARACHLRGALGEAL 132 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 +AF VL ++ ++ ++I Sbjct: 133 DAFMAVLDSRTLADMLHTPE--RQILQE 158 >gi|15803058|ref|NP_289088.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 EDL933] gi|15832651|ref|NP_311424.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. Sakai] gi|16130456|ref|NP_417026.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|24113860|ref|NP_708370.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a str. 301] gi|26248899|ref|NP_754939.1| DNA-binding transcriptional regulator IscR [Escherichia coli CFT073] gi|30063921|ref|NP_838092.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a str. 2457T] gi|82544980|ref|YP_408927.1| DNA-binding transcriptional regulator IscR [Shigella boydii Sb227] gi|82777914|ref|YP_404263.1| DNA-binding transcriptional regulator IscR [Shigella dysenteriae Sd197] gi|89109337|ref|AP_003117.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. W3110] gi|91211858|ref|YP_541844.1| DNA-binding transcriptional regulator IscR [Escherichia coli UTI89] gi|110642696|ref|YP_670426.1| DNA-binding transcriptional regulator IscR [Escherichia coli 536] gi|110806462|ref|YP_689982.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 5 str. 8401] gi|117624759|ref|YP_853672.1| DNA-binding transcriptional regulator IscR [Escherichia coli APEC O1] gi|157158615|ref|YP_001463854.1| DNA-binding transcriptional regulator IscR [Escherichia coli E24377A] gi|168748404|ref|ZP_02773426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4113] gi|168761147|ref|ZP_02786154.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4501] gi|168768629|ref|ZP_02793636.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4486] gi|168773549|ref|ZP_02798556.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4196] gi|168778503|ref|ZP_02803510.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4076] gi|168787883|ref|ZP_02812890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC869] gi|168798908|ref|ZP_02823915.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC508] gi|170082141|ref|YP_001731461.1| Fe-S cluster-containing transcription factor [Escherichia coli str. K-12 substr. DH10B] gi|170684046|ref|YP_001744720.1| DNA-binding transcriptional regulator IscR [Escherichia coli SMS-3-5] gi|187732827|ref|YP_001881322.1| DNA-binding transcriptional regulator IscR [Shigella boydii CDC 3083-94] gi|188493127|ref|ZP_03000397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 53638] gi|191172663|ref|ZP_03034202.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli F11] gi|193064097|ref|ZP_03045182.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E22] gi|194427320|ref|ZP_03059870.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B171] gi|194432170|ref|ZP_03064459.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1012] gi|194437555|ref|ZP_03069651.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 101-1] gi|195936677|ref|ZP_03082059.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. EC4024] gi|208809238|ref|ZP_03251575.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4206] gi|208812791|ref|ZP_03254120.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4045] gi|208820582|ref|ZP_03260902.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4042] gi|209399149|ref|YP_002272006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4115] gi|215487881|ref|YP_002330312.1| DNA-binding transcriptional regulator IscR [Escherichia coli O127:H6 str. E2348/69] gi|217326708|ref|ZP_03442791.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. TW14588] gi|218548032|ref|YP_002381823.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii ATCC 35469] gi|218559457|ref|YP_002392370.1| DNA-binding transcriptional regulator IscR [Escherichia coli S88] gi|218690651|ref|YP_002398863.1| DNA-binding transcriptional regulator IscR [Escherichia coli ED1a] gi|218696158|ref|YP_002403825.1| DNA-binding transcriptional regulator IscR [Escherichia coli 55989] gi|218701041|ref|YP_002408670.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI39] gi|218706034|ref|YP_002413553.1| DNA-binding transcriptional regulator IscR [Escherichia coli UMN026] gi|227887567|ref|ZP_04005372.1| transcription regulator [Escherichia coli 83972] gi|237705042|ref|ZP_04535523.1| iscRSUA operon transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|238901696|ref|YP_002927492.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253772573|ref|YP_003035404.1| DNA-binding transcriptional regulator IscR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162505|ref|YP_003045613.1| DNA-binding transcriptional regulator IscR [Escherichia coli B str. REL606] gi|254794481|ref|YP_003079318.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. TW14359] gi|256021784|ref|ZP_05435649.1| DNA-binding transcriptional regulator IscR [Escherichia sp. 4_1_40B] gi|260845161|ref|YP_003222939.1| DNA-binding transcriptional repressor IscR [Escherichia coli O103:H2 str. 12009] gi|261223033|ref|ZP_05937314.1| Fe-S cluster-containing transcription factor [Escherichia coli O157:H7 str. FRIK2000] gi|261259416|ref|ZP_05951949.1| DNA-binding transcriptional repressor IscR [Escherichia coli O157:H7 str. FRIK966] gi|291283756|ref|YP_003500574.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|293405972|ref|ZP_06649964.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1412] gi|293410946|ref|ZP_06654522.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B354] gi|293415799|ref|ZP_06658442.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B185] gi|293446885|ref|ZP_06663307.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B088] gi|297518205|ref|ZP_06936591.1| DNA-binding transcriptional regulator IscR [Escherichia coli OP50] gi|298381773|ref|ZP_06991372.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1302] gi|300898361|ref|ZP_07116707.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 198-1] gi|300904292|ref|ZP_07122150.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 84-1] gi|300920690|ref|ZP_07137098.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 115-1] gi|300927102|ref|ZP_07142852.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 182-1] gi|300930175|ref|ZP_07145593.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 187-1] gi|300940215|ref|ZP_07154815.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 21-1] gi|300951758|ref|ZP_07165577.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 116-1] gi|300958835|ref|ZP_07170946.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 175-1] gi|300982031|ref|ZP_07175853.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 45-1] gi|300998260|ref|ZP_07181948.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 200-1] gi|301022140|ref|ZP_07186063.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 196-1] gi|301024813|ref|ZP_07188450.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 69-1] gi|301047168|ref|ZP_07194261.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 185-1] gi|301302889|ref|ZP_07209017.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 124-1] gi|301330373|ref|ZP_07223018.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 78-1] gi|301648289|ref|ZP_07248030.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 146-1] gi|306814399|ref|ZP_07448561.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101] gi|307139166|ref|ZP_07498522.1| DNA-binding transcriptional regulator IscR [Escherichia coli H736] gi|307313898|ref|ZP_07593514.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|309784715|ref|ZP_07679348.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1617] gi|312965449|ref|ZP_07779681.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 2362-75] gi|331643152|ref|ZP_08344287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H736] gi|331648229|ref|ZP_08349319.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M605] gi|331653965|ref|ZP_08354966.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M718] gi|331658679|ref|ZP_08359623.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA206] gi|331664096|ref|ZP_08365006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA143] gi|331684181|ref|ZP_08384777.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H299] gi|84027939|sp|P0AGL0|ISCR_ECO57 RecName: Full=HTH-type transcriptional regulator iscR gi|84027940|sp|P0AGK9|ISCR_ECOL6 RecName: Full=HTH-type transcriptional regulator iscR gi|84027941|sp|P0AGK8|ISCR_ECOLI RecName: Full=HTH-type transcriptional regulator iscR gi|84027942|sp|P0AGL1|ISCR_SHIFL RecName: Full=HTH-type transcriptional regulator iscR gi|119371148|sp|Q0TEV4|ISCR_ECOL5 RecName: Full=HTH-type transcriptional regulator iscR gi|119371149|sp|Q1R8K1|ISCR_ECOUT RecName: Full=HTH-type transcriptional regulator iscR gi|119371150|sp|Q31XV9|ISCR_SHIBS RecName: Full=HTH-type transcriptional regulator iscR gi|119371151|sp|Q32D33|ISCR_SHIDS RecName: Full=HTH-type transcriptional regulator iscR gi|123342619|sp|Q0T1Y8|ISCR_SHIF8 RecName: Full=HTH-type transcriptional regulator iscR gi|189044743|sp|A7ZPX5|ISCR_ECO24 RecName: Full=HTH-type transcriptional regulator iscR gi|189044745|sp|A1AE68|ISCR_ECOK1 RecName: Full=HTH-type transcriptional regulator iscR gi|226711610|sp|B7MIM1|ISCR_ECO45 RecName: Full=HTH-type transcriptional regulator iscR gi|226711611|sp|B5Z105|ISCR_ECO5E RecName: Full=HTH-type transcriptional regulator iscR gi|226711612|sp|B7NRI0|ISCR_ECO7I RecName: Full=HTH-type transcriptional regulator iscR gi|226711614|sp|B1XB06|ISCR_ECODH RecName: Full=HTH-type transcriptional regulator iscR gi|226711615|sp|B7N6B8|ISCR_ECOLU RecName: Full=HTH-type transcriptional regulator iscR gi|226711617|sp|B1LNI7|ISCR_ECOSM RecName: Full=HTH-type transcriptional regulator iscR gi|226711619|sp|B7LJQ3|ISCR_ESCF3 RecName: Full=HTH-type transcriptional regulator iscR gi|226711629|sp|B2TXV6|ISCR_SHIB3 RecName: Full=HTH-type transcriptional regulator iscR gi|254806053|sp|B7UGX7|ISCR_ECO27 RecName: Full=HTH-type transcriptional regulator iscR gi|254806054|sp|B7LDC3|ISCR_ECO55 RecName: Full=HTH-type transcriptional regulator iscR gi|254806055|sp|B7MYG4|ISCR_ECO81 RecName: Full=HTH-type transcriptional regulator iscR gi|259493873|sp|C4ZXA6|ISCR_ECOBW RecName: Full=HTH-type transcriptional regulator iscR gi|12516935|gb|AAG57645.1|AE005483_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26109305|gb|AAN81507.1|AE016764_189 Hypothetical protein yfhP [Escherichia coli CFT073] gi|1788880|gb|AAC75584.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|1799939|dbj|BAA16425.1| DNA-binding transcriptional activator [Escherichia coli str. K12 substr. W3110] gi|13362868|dbj|BAB36820.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24052954|gb|AAN44077.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042177|gb|AAP17902.1| hypothetical protein S2750 [Shigella flexneri 2a str. 2457T] gi|81242062|gb|ABB62772.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81246391|gb|ABB67099.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91073432|gb|ABE08313.1| iscRSUA operon transcriptional regulator [Escherichia coli UTI89] gi|110344288|gb|ABG70525.1| hypothetical protein YfhP [Escherichia coli 536] gi|110616010|gb|ABF04677.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115513883|gb|ABJ01958.1| DNA-binding transcriptional repressor [Escherichia coli APEC O1] gi|157080645|gb|ABV20353.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E24377A] gi|169889976|gb|ACB03683.1| Fe-S cluster-containing transcription factor [Escherichia coli str. K-12 substr. DH10B] gi|170521764|gb|ACB19942.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli SMS-3-5] gi|187429819|gb|ACD09093.1| iron-sulfur cluster assembly transcription factor IscR [Shigella boydii CDC 3083-94] gi|187770671|gb|EDU34515.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4196] gi|188017096|gb|EDU55218.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4113] gi|188488326|gb|EDU63429.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 53638] gi|189003523|gb|EDU72509.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4076] gi|189362292|gb|EDU80711.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4486] gi|189368435|gb|EDU86851.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4501] gi|189372323|gb|EDU90739.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC869] gi|189378593|gb|EDU97009.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC508] gi|190907136|gb|EDV66736.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli F11] gi|192929332|gb|EDV82941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E22] gi|194414641|gb|EDX30913.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B171] gi|194419699|gb|EDX35779.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1012] gi|194423361|gb|EDX39352.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 101-1] gi|208729039|gb|EDZ78640.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4206] gi|208734068|gb|EDZ82755.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4045] gi|208740705|gb|EDZ88387.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4042] gi|209160549|gb|ACI37982.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. EC4115] gi|209763228|gb|ACI79926.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763230|gb|ACI79927.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763232|gb|ACI79928.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763234|gb|ACI79929.1| hypothetical protein ECs3397 [Escherichia coli] gi|209763236|gb|ACI79930.1| hypothetical protein ECs3397 [Escherichia coli] gi|215265953|emb|CAS10362.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6 str. E2348/69] gi|217319075|gb|EEC27500.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli O157:H7 str. TW14588] gi|218352890|emb|CAU98689.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218355573|emb|CAQ88185.1| DNA-binding transcriptional repressor [Escherichia fergusonii ATCC 35469] gi|218366226|emb|CAR03973.1| DNA-binding transcriptional repressor [Escherichia coli S88] gi|218371027|emb|CAR18854.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218428215|emb|CAR09130.2| DNA-binding transcriptional repressor [Escherichia coli ED1a] gi|218433131|emb|CAR14027.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|222034242|emb|CAP76983.1| HTH-type transcriptional regulator iscR [Escherichia coli LF82] gi|226901408|gb|EEH87667.1| iscRSUA operon transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|227835917|gb|EEJ46383.1| transcription regulator [Escherichia coli 83972] gi|238860965|gb|ACR62963.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242378131|emb|CAQ32904.1| IscR transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253323617|gb|ACT28219.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974406|gb|ACT40077.1| DNA-binding transcriptional repressor [Escherichia coli B str. REL606] gi|253978573|gb|ACT44243.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|254593881|gb|ACT73242.1| Fe-S cluster-containing transcription factor [Escherichia coli O157:H7 str. TW14359] gi|257760308|dbj|BAI31805.1| DNA-binding transcriptional repressor IscR [Escherichia coli O103:H2 str. 12009] gi|260448389|gb|ACX38811.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1] gi|281179585|dbj|BAI55915.1| conserved hypothetical protein [Escherichia coli SE15] gi|281601934|gb|ADA74918.1| HTH-type transcriptional regulator iscR [Shigella flexneri 2002017] gi|284922481|emb|CBG35568.1| transcriptional regulator [Escherichia coli 042] gi|290763629|gb|ADD57590.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|291323715|gb|EFE63143.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B088] gi|291428180|gb|EFF01207.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1412] gi|291433447|gb|EFF06426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B185] gi|291471414|gb|EFF13898.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B354] gi|294489645|gb|ADE88401.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli IHE3034] gi|298279215|gb|EFI20729.1| DNA-binding transcriptional regulator IscR [Escherichia coli FVEC1302] gi|299881341|gb|EFI89552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 196-1] gi|300300916|gb|EFJ57301.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 185-1] gi|300304032|gb|EFJ58552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 200-1] gi|300314520|gb|EFJ64304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 175-1] gi|300357946|gb|EFJ73816.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 198-1] gi|300396344|gb|EFJ79882.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 69-1] gi|300403750|gb|EFJ87288.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 84-1] gi|300408859|gb|EFJ92397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 45-1] gi|300412338|gb|EFJ95648.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 115-1] gi|300416906|gb|EFK00217.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 182-1] gi|300449042|gb|EFK12662.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 116-1] gi|300454971|gb|EFK18464.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 21-1] gi|300461935|gb|EFK25428.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 187-1] gi|300841824|gb|EFK69584.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 124-1] gi|300843633|gb|EFK71393.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 78-1] gi|301073640|gb|EFK88446.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 146-1] gi|305851793|gb|EFM52245.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101] gi|306906399|gb|EFN36914.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W] gi|307554554|gb|ADN47329.1| iscRSUA operon transcriptional regulator [Escherichia coli ABU 83972] gi|307625914|gb|ADN70218.1| DNA-binding transcriptional regulator IscR [Escherichia coli UM146] gi|308927085|gb|EFP72559.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 1617] gi|309702863|emb|CBJ02194.1| transcriptional regulator [Escherichia coli ETEC H10407] gi|312289869|gb|EFR17757.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 2362-75] gi|312947108|gb|ADR27935.1| DNA-binding transcriptional regulator IscR [Escherichia coli O83:H1 str. NRG 857C] gi|313651020|gb|EFS15420.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri 2a str. 2457T] gi|315061850|gb|ADT76177.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315137155|dbj|BAJ44314.1| DNA-binding transcriptional repressor [Escherichia coli DH1] gi|315256552|gb|EFU36520.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 85-1] gi|315288054|gb|EFU47456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 110-3] gi|315292493|gb|EFU51845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 153-1] gi|315300496|gb|EFU59725.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 16-3] gi|315615792|gb|EFU96424.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 3431] gi|320180526|gb|EFW55457.1| Iron-sulfur cluster regulator IscR [Shigella boydii ATCC 9905] gi|320186422|gb|EFW61152.1| Iron-sulfur cluster regulator IscR [Shigella flexneri CDC 796-83] gi|320188870|gb|EFW63529.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str. EC1212] gi|320196372|gb|EFW70996.1| Iron-sulfur cluster regulator IscR [Escherichia coli WV_060327] gi|320640879|gb|EFX10367.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. G5101] gi|320646322|gb|EFX15249.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H- str. 493-89] gi|320651502|gb|EFX19889.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H- str. H 2687] gi|320657213|gb|EFX25022.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667623|gb|EFX34538.1| DNA-binding transcriptional regulator IscR [Escherichia coli O157:H7 str. LSU-61] gi|323159301|gb|EFZ45287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E128010] gi|323170194|gb|EFZ55847.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli LT-68] gi|323188349|gb|EFZ73641.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli RN587/1] gi|323377569|gb|ADX49837.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11] gi|323936424|gb|EGB32714.1| iron-sulfur cluster assembly transcription protein IscR [Escherichia coli E1520] gi|323949191|gb|EGB45082.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli H252] gi|323955772|gb|EGB51530.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli H263] gi|323961347|gb|EGB56959.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli H489] gi|323967979|gb|EGB63391.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli M863] gi|323971055|gb|EGB66303.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli TA007] gi|323977286|gb|EGB72372.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli TW10509] gi|324008494|gb|EGB77713.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 57-2] gi|324011237|gb|EGB80456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 60-1] gi|324113025|gb|EGC07001.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia fergusonii B253] gi|324118259|gb|EGC12155.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli E1167] gi|325496436|gb|EGC94295.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii ECD227] gi|326340335|gb|EGD64139.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str. 1125] gi|326345019|gb|EGD68763.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str. 1044] gi|327252239|gb|EGE63911.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli STEC_7v] gi|330912307|gb|EGH40817.1| iron-sulfur cluster regulator IscR [Escherichia coli AA86] gi|331039950|gb|EGI12170.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H736] gi|331043089|gb|EGI15229.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M605] gi|331048814|gb|EGI20890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli M718] gi|331054344|gb|EGI26371.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA206] gi|331059895|gb|EGI31872.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA143] gi|331079133|gb|EGI50335.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H299] gi|332087982|gb|EGI93107.1| iron-sulfur cluster assembly transcription factor IscR [Shigella boydii 5216-82] gi|332089837|gb|EGI94938.1| iron-sulfur cluster assembly transcription factor IscR [Shigella dysenteriae 155-74] gi|332092768|gb|EGI97837.1| iron-sulfur cluster assembly transcription factor IscR [Shigella boydii 3594-74] gi|332344406|gb|AEE57740.1| iron-sulfur cluster assembly transcription factor protein IscR [Escherichia coli UMNK88] gi|332754063|gb|EGJ84434.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri 4343-70] gi|332754140|gb|EGJ84509.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-671] gi|332756387|gb|EGJ86738.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri 2747-71] gi|333000511|gb|EGK20090.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri VA-6] gi|333000908|gb|EGK20479.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-218] gi|333002329|gb|EGK21893.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-272] gi|333016152|gb|EGK35484.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-227] gi|333016465|gb|EGK35796.1| iron-sulfur cluster assembly transcription factor IscR [Shigella flexneri K-304] Length = 162 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|226313931|ref|YP_002773827.1| hypothetical protein BBR47_43460 [Brevibacillus brevis NBRC 100599] gi|226096881|dbj|BAH45323.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 132 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ TDY + ++Y A D P + +AE +S+ +L K+L LVKAG++ +V G Sbjct: 1 MKYSQATDYALHAMLYLVAEAPDKPVSVQLLAEKLGVSQTYLSKMLTKLVKAGLIHSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R D I+ LDV++A E + + EC H +C + V+ A Sbjct: 61 ANGGYKLKRNQDDISFLDVIQAIEGTTSLFECSFRHD------SACLIQQVVTDAEQQMM 114 Query: 120 DVLTQYSIECLV 131 L I LV Sbjct: 115 HTLKSKKIADLV 126 >gi|156932917|ref|YP_001436833.1| DNA-binding transcriptional regulator IscR [Cronobacter sakazakii ATCC BAA-894] gi|189044748|sp|A7MGX6|ISCR_ENTS8 RecName: Full=HTH-type transcriptional regulator iscR gi|156531171|gb|ABU75997.1| hypothetical protein ESA_00720 [Cronobacter sakazakii ATCC BAA-894] Length = 162 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A QI + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|108803666|ref|YP_643603.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764909|gb|ABG03791.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter xylanophilus DSM 9941] Length = 150 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK++ Y +R L+ + P +S+IA I E FL +I L +AGI+E+ RG Sbjct: 1 MRLTKKSKYAVRALVEVVLRGSGGPVGVSEIARRQRIPERFLEQIFGELRRAGILESHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG P +++T+LD+V+ + A C A C + V +A A Sbjct: 61 AHGGYSFSMPPEEVTVLDIVEVLDGEIRPARCSAGGVCYIDDAPLCSTSRVWDEARVALE 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 V +YSI L I+ Sbjct: 121 GVFGRYSIAQLAAAEREIR 139 >gi|83858482|ref|ZP_00952004.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633] gi|83853305|gb|EAP91157.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633] Length = 155 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A + + P + IA IS +L ++ L +AG+V++VRG Sbjct: 1 MKLSTKGRYAVMAMVDLAQASLEKPVPLGDIASRQEISLSYLEQLFAKLRRAGVVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L RP + I D++ A EE V C C + + Sbjct: 61 PGGGYKLARPLGETRIADIMLAVEEPVDVTRCQGKATGCLESGRRCITHDLWDELSRHIH 120 Query: 120 DVLTQYSIECLVRNR 134 L ++E ++ R Sbjct: 121 LFLNDVTLEDVLERR 135 >gi|163942148|ref|YP_001647032.1| BadM/Rrf2 family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013616|ref|ZP_04170747.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048] gi|229019620|ref|ZP_04176432.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273] gi|229025860|ref|ZP_04182256.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272] gi|229062093|ref|ZP_04199418.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603] gi|229135221|ref|ZP_04264020.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196] gi|229169141|ref|ZP_04296856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621] gi|163864345|gb|ABY45404.1| transcriptional regulator, BadM/Rrf2 family [Bacillus weihenstephanensis KBAB4] gi|228614369|gb|EEK71479.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621] gi|228648263|gb|EEL04299.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196] gi|228717245|gb|EEL68920.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603] gi|228735412|gb|EEL86011.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272] gi|228741668|gb|EEL91856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273] gi|228747675|gb|EEL97547.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048] Length = 138 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L IT DV++ E V E + + + +A Sbjct: 61 AYGGYVLSDQPVNITAGDVIRVLEGPISVVEMIEEEEP--------AQRQLWMRVRDAVQ 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E LVR Sbjct: 113 EVLDSTTLEDLVR 125 >gi|298246146|ref|ZP_06969952.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297553627|gb|EFH87492.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 174 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKA--GIVETVR 58 ++ + +YG+R+++ A H P ++ I++A + +L ++++ L A +V + R Sbjct: 3 RVSTKGEYGVRIMVDLARHYGGRPRSLTDISQAETLPLAYLEQLVKLLRDADPPLVSSTR 62 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALN 116 G GG RL R ++I++ ++V+ E C ++ C + SC + + + Sbjct: 63 GAHGGYRLNRDPNEISMGEIVRVLEGPISPMICATEGEMSQICGFIDSCKTKYLWARVRD 122 Query: 117 AFFDVLTQYSIECLVRNRSS 136 A L ++ LV + Sbjct: 123 AVAQTLDSITLAELVAQTAE 142 >gi|255319821|ref|ZP_05361026.1| HTH-type transcriptional regulator NsrR [Acinetobacter radioresistens SK82] gi|262380353|ref|ZP_06073507.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255303140|gb|EET82352.1| HTH-type transcriptional regulator NsrR [Acinetobacter radioresistens SK82] gi|262297799|gb|EEY85714.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 149 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R LMY + + P I++IA IS L KI+ + K G + T+RG+ Sbjct: 1 MQLNKFTDYALRSLMYISRPRNTPYTIAEIAVDLQISHNHLVKIVHFMGKQGWLITLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L A + D+V+ + + EC + C L CGL +L A+ F+ Sbjct: 61 GGGIQLNPQALDSRVGDIVRILQGDQPIVEC---NSPPCVLRSDCGLKGILDTAVEQFYQ 117 Query: 121 VLTQYSIECLVR 132 L QY++ ++ Sbjct: 118 SLNQYTLGQVLN 129 >gi|210611516|ref|ZP_03288936.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787] gi|319936514|ref|ZP_08010929.1| cysteine desulfurase [Coprobacillus sp. 29_1] gi|210151963|gb|EEA82970.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787] gi|319808406|gb|EFW04961.1| cysteine desulfurase [Coprobacillus sp. 29_1] Length = 135 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +RVL+ A + + +IA+ ISE +L +I++ LV G++ + G+ Sbjct: 2 ISTKGRYALRVLIDLAEQDTTTYVPLKEIAKRQGISEKYLQQIVKILVGKGLLTGISGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL ++ + ++++ E S C A C C + +K N D Sbjct: 62 GGYRLTASPEEYNVGEILELMEGSLTPVACLAPDTKTCSRSSHCKTLPMWKKFDNLVHDY 121 Query: 122 LTQYSIECLVR 132 +I LV Sbjct: 122 FFHITIADLVN 132 >gi|83721287|ref|YP_442725.1| Rrf2 family protein [Burkholderia thailandensis E264] gi|83655112|gb|ABC39175.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 180 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 16 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 75 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ VV+ TE F + CF +C + +C L V A A Sbjct: 76 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 135 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L + S + + Sbjct: 136 FFAELDKHTIGELAQPASQLSMLLG 160 >gi|288934077|ref|YP_003438136.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Klebsiella variicola At-22] gi|290508273|ref|ZP_06547644.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. 1_1_55] gi|288888806|gb|ADC57124.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola At-22] gi|289777667|gb|EFD85664.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. 1_1_55] Length = 163 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSERLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEIL 136 >gi|262377318|ref|ZP_06070542.1| transcriptional regulator [Acinetobacter lwoffii SH145] gi|262307771|gb|EEY88910.1| transcriptional regulator [Acinetobacter lwoffii SH145] Length = 146 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A D P I+++AE +S+ KI+ + K + T RG+ Sbjct: 1 MQLNKFTDYALRILMYVAQPRDLPYTIAELAERLQVSQNHAMKIVHFMAKQDWLITTRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + + + + +V+ + V EC + C L +CGL +L A+ F+ Sbjct: 61 GGGIRLNQASLNLQLGQIVRILQRDSNVVEC---NSPPCVLRPTCGLKGILDDAVEQFYS 117 Query: 121 VLTQYSIECLVRNRS 135 L QY ++ ++ R+ Sbjct: 118 SLDQYVLKDVITPRN 132 >gi|189220122|ref|YP_001940762.1| transcriptional regulator YrzC [Methylacidiphilum infernorum V4] gi|189186980|gb|ACD84165.1| Putative transcriptional regulator YrzC [Methylacidiphilum infernorum V4] Length = 154 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTKR+ Y IR L+Y A I +IAE I + FL IL L G + + RG Sbjct: 1 MFLTKRSKYAIRALLYLAKEQQRGTILIQEIAEKEKIPKKFLESILLELKNNGFLSSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKAL 115 + GG L P ++I I V++ + C + DC +C + ++++ Sbjct: 61 KGGGYALEYPPEKIPIGSVIRLIDGPLAPVRCVSQTAYAPCEDCLDEKTCVIRLLMKETR 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138 + VL + S++ L++ S +K Sbjct: 121 DVISTVLDKTSLKELLQKESQLK 143 >gi|313620173|gb|EFR91654.1| putative transcriptional regulator [Listeria innocua FSL S4-378] Length = 138 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA+ I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPANSISFLDVIQAIEGKAAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQAVGSIV 130 >gi|291523627|emb|CBK81920.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus GD/7] Length = 140 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +RV+ Y A++ D + +IAEA IS +L I + L K +E GR Sbjct: 4 ISSKGRYALRVMTYLAVNADREFVPLKEIAEAESISLKYLESIARMLSKEHYIEGTSGRG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R + + D+++ TE + C + C C V + N D Sbjct: 64 GGYHLTRKPEAYKVGDILRLTEGTLAPVSCLKDNAEPCGRAELCCTLPVWQGLSNVITDY 123 Query: 122 LTQYSIECLV 131 L ++ + Sbjct: 124 LDNMTLADVA 133 >gi|326316430|ref|YP_004234102.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373266|gb|ADX45535.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 168 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 56/138 (40%), Positives = 75/138 (54%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA P I+++A IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL PA I + DVV+ TE F + ECF C L G C L L +A +F Sbjct: 61 GRGGGLRLRVPAADIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSF 120 Query: 119 FDVLTQYSIECLVRNRSS 136 VL ++ LV ++ Sbjct: 121 LAVLDGVTLADLVARPAA 138 >gi|288961940|ref|YP_003452250.1| transcriptional regulator [Azospirillum sp. B510] gi|288914220|dbj|BAI75706.1| transcriptional regulator [Azospirillum sp. B510] Length = 150 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++ Y +R L+ A + I+ IAE I FL IL L K G++ RG+ Sbjct: 2 LSQKAKYALRALIMLAEKDTGDLILIADIAERENIPRKFLEAILVELRKEGLLFAKRGKS 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL RPA +IT +V++ + C + DC +C + ++ + +A Sbjct: 62 GGYRLARPAAEITFGEVIRLIDGHLAPIPCASKASFRPCEDCIDTATCSVRWLMVQVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 VL ++ +R+R S I Sbjct: 122 TAAVLDNRTLADALRHRQSTGNI 144 >gi|270308844|ref|YP_003330902.1| transcriptional regulator [Dehalococcoides sp. VS] gi|270154736|gb|ACZ62574.1| transcriptional regulator [Dehalococcoides sp. VS] Length = 148 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R + + + A+H + P I +A+ ISE +L ++ PL AG+V +VRG Sbjct: 1 MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I + D+VKATE S +EC ++ C C +V K A Sbjct: 61 ANGGFVLARDPKEIRLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLKIKKATD 119 Query: 120 DVLTQYSIECLVRN 133 ++L ++E LV+ Sbjct: 120 EILDSINLENLVQQ 133 >gi|331673987|ref|ZP_08374750.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA280] gi|331069260|gb|EGI40652.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA280] Length = 162 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|302878002|ref|YP_003846566.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] gi|302580791|gb|ADL54802.1| transcriptional regulator, BadM/Rrf2 family [Gallionella capsiferriformans ES-2] Length = 143 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TD +R L+Y + I+++++A I + L K++ LV AG+V + RGR Sbjct: 1 MQLNLSTDIALRTLIYLGQKKET-ATIAEVSDAFDIVKTHLMKVVMQLVAAGVVVSERGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118 GG+RL R +I + DVV+ E + + C + D CPL+ +C L ++L A AF Sbjct: 60 NGGIRLARNPAEIVVGDVVRLMENNLALLYCMKTDAPDDCCPLMPNCHLRTILFNAQKAF 119 Query: 119 FDVLTQYSIECLVRN 133 D L ++ L+ + Sbjct: 120 LDTLDGNTLADLLPD 134 >gi|74313057|ref|YP_311476.1| DNA-binding transcriptional regulator IscR [Shigella sonnei Ss046] gi|157162006|ref|YP_001459324.1| DNA-binding transcriptional regulator IscR [Escherichia coli HS] gi|170019186|ref|YP_001724140.1| DNA-binding transcriptional regulator IscR [Escherichia coli ATCC 8739] gi|191169254|ref|ZP_03031006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B7A] gi|193068431|ref|ZP_03049394.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E110019] gi|209920008|ref|YP_002294092.1| DNA-binding transcriptional regulator IscR [Escherichia coli SE11] gi|218555056|ref|YP_002387969.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI1] gi|256017320|ref|ZP_05431185.1| DNA-binding transcriptional regulator IscR [Shigella sp. D9] gi|260856625|ref|YP_003230516.1| DNA-binding transcriptional repressor IscR [Escherichia coli O26:H11 str. 11368] gi|260869220|ref|YP_003235622.1| DNA-binding transcriptional repressor IscR [Escherichia coli O111:H- str. 11128] gi|300817699|ref|ZP_07097914.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 107-1] gi|300820799|ref|ZP_07100949.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 119-7] gi|309794422|ref|ZP_07688845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 145-7] gi|331669279|ref|ZP_08370127.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA271] gi|331678524|ref|ZP_08379199.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H591] gi|332278315|ref|ZP_08390728.1| DNA-binding transcriptional repressor [Shigella sp. D9] gi|119371152|sp|Q3YZ21|ISCR_SHISS RecName: Full=HTH-type transcriptional regulator iscR gi|189044744|sp|A8A337|ISCR_ECOHS RecName: Full=HTH-type transcriptional regulator iscR gi|189044746|sp|B1IWD0|ISCR_ECOLC RecName: Full=HTH-type transcriptional regulator iscR gi|226711613|sp|B7M7N4|ISCR_ECO8A RecName: Full=HTH-type transcriptional regulator iscR gi|226711616|sp|B6I5A3|ISCR_ECOSE RecName: Full=HTH-type transcriptional regulator iscR gi|73856534|gb|AAZ89241.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|157067686|gb|ABV06941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli HS] gi|169754114|gb|ACA76813.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC 8739] gi|190900707|gb|EDV60504.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli B7A] gi|192958383|gb|EDV88823.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli E110019] gi|209913267|dbj|BAG78341.1| conserved hypothetical protein [Escherichia coli SE11] gi|218361824|emb|CAQ99422.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|257755274|dbj|BAI26776.1| DNA-binding transcriptional repressor IscR [Escherichia coli O26:H11 str. 11368] gi|257765576|dbj|BAI37071.1| DNA-binding transcriptional repressor IscR [Escherichia coli O111:H- str. 11128] gi|300526552|gb|EFK47621.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 119-7] gi|300529687|gb|EFK50749.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 107-1] gi|308121878|gb|EFO59140.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 145-7] gi|320200095|gb|EFW74684.1| Iron-sulfur cluster regulator IscR [Escherichia coli EC4100B] gi|323156187|gb|EFZ42346.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli EPECa14] gi|323169392|gb|EFZ55068.1| iron-sulfur cluster assembly transcription factor IscR [Shigella sonnei 53G] gi|323177344|gb|EFZ62932.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli 1180] gi|323941207|gb|EGB37392.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia coli E482] gi|323944588|gb|EGB40656.1| iron-sulfur cluster assembly transcription protein IscR [Escherichia coli H120] gi|324020053|gb|EGB89272.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli MS 117-3] gi|331064473|gb|EGI36384.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli TA271] gi|331074984|gb|EGI46304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia coli H591] gi|332100667|gb|EGJ04013.1| DNA-binding transcriptional repressor [Shigella sp. D9] Length = 162 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|313639464|gb|EFS04318.1| putative transcriptional regulator [Listeria seeligeri FSL S4-171] Length = 138 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +PA I+ LDV++A E C K C + V+ A Sbjct: 61 VNGGYKLAKPATNISFLDVIQAIEGKTAFFHC--DPKNHAETKPHCLIGEVMGNAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L+ +I +V Sbjct: 119 DYLSNQTIGSIV 130 >gi|47096299|ref|ZP_00233896.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|254830378|ref|ZP_05235033.1| hypothetical protein Lmon1_03417 [Listeria monocytogenes 10403S] gi|254900131|ref|ZP_05260055.1| hypothetical protein LmonJ_09970 [Listeria monocytogenes J0161] gi|254911315|ref|ZP_05261327.1| Rrf2 family protein [Listeria monocytogenes J2818] gi|254935642|ref|ZP_05267339.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|47015344|gb|EAL06280.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|258608223|gb|EEW20831.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|293589246|gb|EFF97580.1| Rrf2 family protein [Listeria monocytogenes J2818] Length = 138 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA +E+V G Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|300022521|ref|YP_003755132.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] gi|299524342|gb|ADJ22811.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 145 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +RVLMY D I +IA+ ISE L K++ L + G V+T+RGR Sbjct: 1 MRLTVHSDYALRVLMYLGAREDRLATIQEIAKVYAISENHLMKVVNKLARHGFVKTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL RPA+ +TI +V++ EE F V ECF + C + SC L LR+A++AF Sbjct: 61 GGGLRLGRPAEDLTIGEVLRVVEEDFHVVECFGESNM-CRISQSCRLRLALRRAIDAFLA 119 Query: 121 VLTQYSIECLVRNRSSI 137 L ++++ ++ NR+SI Sbjct: 120 ELDEWTLADILSNRNSI 136 >gi|206579114|ref|YP_002237116.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae 342] gi|226711620|sp|B5XNJ6|ISCR_KLEP3 RecName: Full=HTH-type transcriptional regulator iscR gi|206568172|gb|ACI09948.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae 342] Length = 163 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSERLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEIL 136 >gi|148556886|ref|YP_001264468.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502076|gb|ABQ70330.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 137 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++RT Y IR L++ A H + P ++++IAE I FL IL + +AG VET+RG+ Sbjct: 2 LSQRTRYAIRALLHLADHHGEGPIQLAEIAERQNIPAKFLTVILSEMKRAGFVETMRGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L R +IT D+V+AT S + C A C C L V+ + Sbjct: 62 GGYWLSRAPTEITYGDIVRATRGSLALVPCAARLAYTPCDHCIDETECRLRGVMLSVRDE 121 Query: 118 FFDVLTQYSIEC 129 +L Q S+ Sbjct: 122 TAKILDQLSLAE 133 >gi|163786651|ref|ZP_02181099.1| transcriptional regulator, rrf2 family protein [Flavobacteriales bacterium ALC-1] gi|159878511|gb|EDP72567.1| transcriptional regulator, rrf2 family protein [Flavobacteriales bacterium ALC-1] Length = 136 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L+Y A P +IS+I+++ IS FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALVYLAKQKKRDPVQISEISKSENISRKFLESILLTLRKNGILGSKKGKN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + ++I + +++ E + C F DCP +C + +V+ K + Sbjct: 62 GGYYLLKEPNEIPMTSIMRLLEGPIAMVPCVSLNFYEKCDDCPDENACAVHNVMLKVRDN 121 Query: 118 FFDVLTQYSIECL 130 D+ ++ L Sbjct: 122 TLDIFRNTTLADL 134 >gi|154253702|ref|YP_001414526.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154157652|gb|ABS64869.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 164 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT + Y + + A H+ P +++IA+ IS +L ++ L + +V++VRG Sbjct: 7 KLTTKGRYAVMAMADLARHSSGSPVALAEIADRQEISLSYLEQLFAKLRRGDLVKSVRGP 66 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFF 119 GG L R AD I I DV+ A +E C C P G C + + Sbjct: 67 GGGYLLSREADSIRISDVILAVDEPIKATRCDLGSPKGCMPSSGRCITHDLWEGLSHQIQ 126 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L S+ ++ R + K F+A Sbjct: 127 LYLGSVSLGDVIDGRIAGKSAFDA 150 >gi|237732511|ref|ZP_04562992.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2] gi|283832088|ref|ZP_06351829.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter youngae ATCC 29220] gi|226908050|gb|EEH93968.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2] gi|291071714|gb|EFE09823.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter youngae ATCC 29220] Length = 163 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|289803176|ref|ZP_06533805.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 155 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|254504883|ref|ZP_05117034.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] gi|222440954|gb|EEE47633.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11] Length = 144 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +D+ +R+LM + +D P + ++ +++ + KI+ L KAG +ET RGR Sbjct: 9 MRLSQASDFALRLLMAIS-QSDAPQTVDKLTAQLGLAKSHVMKIVAQLAKAGYLETTRGR 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ + AD I I DVV+ E V C CP + C L + +A AF D Sbjct: 68 GGGIRIAKEADDIRIGDVVRLIEPDLGVVACLKDEPASCPFLPRCALKGAMARATEAFLD 127 Query: 121 VLTQYSIECLVRNRSSI 137 L + ++ ++ I Sbjct: 128 SLNEQTLGSILAGTQKI 144 >gi|315645813|ref|ZP_07898934.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315278574|gb|EFU41888.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 139 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT DV++ E + + + ++ Sbjct: 61 AYGGYILSRDPATITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112 Query: 120 DVLTQYSIECLVR 132 +VL +++ L+ Sbjct: 113 EVLDSTTLDYLIN 125 >gi|260892331|ref|YP_003238428.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] gi|260864472|gb|ACX51578.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] Length = 154 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R LM A H P + +A ISE +L ++ L AG++ ++RG Sbjct: 1 MKLSTRIRYGVRALMDIAEHGTAGPVSLKDVARRQGISEQYLEQLALLLKGAGLIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I + ++V+ + +C ++ C C + V R+A AF Sbjct: 61 AHGGFVLSRQATEIRLSEIVEILGGPIKLVDCLYDQEV-CTRADCCAVRDVWREANEAFR 119 Query: 120 DVLTQYSIECLVRNRSS 136 +VL ++ LV + Sbjct: 120 NVLAAVTLADLVERQRK 136 >gi|157144531|ref|YP_001451850.1| DNA-binding transcriptional regulator IscR [Citrobacter koseri ATCC BAA-895] gi|189044742|sp|A8AD51|ISCR_CITK8 RecName: Full=HTH-type transcriptional regulator iscR gi|157081736|gb|ABV11414.1| hypothetical protein CKO_00250 [Citrobacter koseri ATCC BAA-895] Length = 163 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|119945067|ref|YP_942747.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas ingrahamii 37] gi|119863671|gb|ABM03148.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas ingrahamii 37] Length = 158 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AI P ++ I+ IS +L ++ L K +V +VRG Sbjct: 1 MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 GG +L + QI++ ++ A ES V +C K C G C S+ + + Sbjct: 61 PGGGYKLGKERHQISVAMIIDAVNESVDVRKC--GGKGGCAEDGVQCLTHSLWAQLSDRI 118 Query: 119 FDVLTQYSIECLV 131 L ++E L+ Sbjct: 119 STFLDNITLEELM 131 >gi|237747556|ref|ZP_04578036.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229378918|gb|EEO29009.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 155 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ H + P ++ I+E IS +L ++ L + +V+++RG Sbjct: 1 MRLTTKGRFAVTAMIDLTRHQETGPVSLAGISERQDISVAYLEQLFSKLRRKNLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 GG L A IT+ D+V A +E V C +C C ++ Sbjct: 61 PGGGYILANDAADITVADIVFAVDEPLDVTRC--GGNGNCARGSIKCISHNLWASLNEKI 118 Query: 119 FDVLTQYSIECL 130 D L + L Sbjct: 119 IDYLESVPLSEL 130 >gi|291485160|dbj|BAI86235.1| hypothetical protein BSNT_03994 [Bacillus subtilis subsp. natto BEST195] Length = 139 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 3 KISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L D IT D+++ E E + + + +A + Sbjct: 63 YGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVKE 114 Query: 121 VLTQYSIECLV 131 VL ++E L Sbjct: 115 VLDSTTLEDLA 125 >gi|167581669|ref|ZP_02374543.1| Rrf2 family protein [Burkholderia thailandensis TXDOH] Length = 165 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ VV+ TE F + CF +C + +C L V A A Sbjct: 61 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L + S + + Sbjct: 121 FFAELDKHTIGELAQPASQLSMLLG 145 >gi|283786146|ref|YP_003366011.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282949600|emb|CBG89219.1| transcriptional regulator [Citrobacter rodentium ICC168] Length = 163 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|224824735|ref|ZP_03697842.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224603228|gb|EEG09404.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 153 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RVLMY D P I +IAE +S L K++ + + G + T RG Sbjct: 1 MQLTRFTDLGLRVLMYLTHRERDTPVTIPEIAERFAVSRNHLVKVVHFMAQQGWLVTTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L RPAD + DV++ E + +C + C L C L S L L AFF Sbjct: 61 KGGGLALARPADHYRLGDVIRTLEGMSDLIDCA---EPPCALRSGCQLKSALDVGLTAFF 117 Query: 120 DVLTQYSIECLVRNRSS 136 + L ++++ V + Sbjct: 118 EALNRFTLASAVAAPTG 134 >gi|114778698|ref|ZP_01453510.1| Iron-sulphur cluster assembly transcription factor IscR [Mariprofundus ferrooxydans PV-1] gi|114551060|gb|EAU53622.1| Iron-sulphur cluster assembly transcription factor IscR [Mariprofundus ferrooxydans PV-1] Length = 166 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ ND P ++ I+E IS +L ++ + L + G+V +VRG Sbjct: 1 MRLTSKGRYAVSAMVDLNKQQNDGPVTLAAISERQFISLSYLEQLFRRLRENGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I+I D+++A E C + C C + + Sbjct: 61 PGGGYLLAKDAVDISIADIIRAVNEPVRTTMC-ENGVRGCHRGNRCDTHQLWESLGQHIY 119 Query: 120 DVLTQYSIECLVRN 133 L S+ + Sbjct: 120 RFLDAVSLAKVCER 133 >gi|294054903|ref|YP_003548561.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] gi|293614236|gb|ADE54391.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] Length = 145 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 1/141 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RVL+Y + + I ++AE +S + KI++ L G +ET+RG+ Sbjct: 1 MELTSFTDYSLRVLIYLTHDRERLSSIDELAEFYGLSRHHVAKIVKRLADLGYLETLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL + I I +V+K TE F + EC C + G C L L A + FF Sbjct: 61 NGGLRLGAEPESINIAEVIKGTEPHFNLVECMGGASDTACMIDGHCKLKGALAVARSHFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L +YS+ + S + + Sbjct: 121 KHLAEYSLADVALTEDSSRAV 141 >gi|161502301|ref|YP_001569413.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189044750|sp|A9MHJ3|ISCR_SALAR RecName: Full=HTH-type transcriptional regulator iscR gi|160863648|gb|ABX20271.1| hypothetical protein SARI_00332 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 164 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|296136896|ref|YP_003644138.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] gi|295797018|gb|ADG31808.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia K12] Length = 146 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 63/129 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D+G+R L+ A ++A IS L K+LQ L G V+T RG Sbjct: 1 MRLTSFSDFGLRALLVLAGSERETWSSVELAAKLDISRDHLIKVLQRLAAGGYVQTTRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I I +V++ E+ + ECF C L G C L L +A AF+ Sbjct: 61 GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120 Query: 121 VLTQYSIEC 129 L + ++ Sbjct: 121 ALNETTLAD 129 >gi|295094646|emb|CBK83737.1| rrf2 family protein (putative transcriptional regulator) [Coprococcus sp. ART55/1] Length = 144 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 69/136 (50%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ +I++ + +A C +S+ +L ++ L+KAG + +VRG Sbjct: 1 MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL PA++IT+ V++A E + D +V + + V +A + Sbjct: 61 RGGYRLNMPAEEITVGMVLRAIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLESAINN 120 Query: 121 VLTQYSIECLVRNRSS 136 VL +I L R S Sbjct: 121 VLDNKTIADLTREYSD 136 >gi|261415306|ref|YP_003248989.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371762|gb|ACX74507.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327324|gb|ADL26525.1| transcriptional regulator, Rrf2 family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 146 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + Y IRV++ A + + + + +AE +SE +L IL LVK ++E RG Sbjct: 1 MRESTKGRYAIRVIIDMAENGESEFHPLHNLAERQGLSEKYLEAILGVLVKNNVLEGARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L +PA ++T+ +++ E S EC A K C C + + Sbjct: 61 KGGGYKLAKPAAELTVWEILSVIETSISPVECVADGKNGCDRADVCPTLPMWKDLAKIIK 120 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D T +IE L R I + Sbjct: 121 DYFTGITIEQLARKAPKIARPL 142 >gi|254994481|ref|ZP_05276671.1| hypothetical protein LmonocytoFSL_16972 [Listeria monocytogenes FSL J2-064] Length = 143 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRN 133 DVL Q ++ L+++ Sbjct: 113 DVLDQTTLADLLKH 126 >gi|253583197|ref|ZP_04860395.1| RRF2 family protein [Fusobacterium varium ATCC 27725] gi|251833769|gb|EES62332.1| RRF2 family protein [Fusobacterium varium ATCC 27725] Length = 140 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R Sbjct: 1 MKISTKVRYGLRALAYIAEKSGEGKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG RL + ++IT+ + K +E V +C HK C +CG T + K + Sbjct: 61 GPNGGYRLAKEPNEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGSTCIWSKLDS 119 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + ++ ++N+ I Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140 >gi|77919457|ref|YP_357272.1| putative Fe-S cluster regulator protein [Pelobacter carbinolicus DSM 2380] gi|77545540|gb|ABA89102.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 147 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y +R ++ ++ + D P IA+ IS FL +IL L + IV +VRG Sbjct: 1 MRLSTKAQYAVRAMVRLSLENADTPVSSKAIADLEGISVTFLEQILAKLRRGKIVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA++I + +++++ EE+ C +C C V + Sbjct: 61 PGGGFVLARPAEEIRVDEIIESVEEALMPVACM-DETGECQCEELCFTHMVWAGLGHRIK 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L +++ L R S I++ Sbjct: 120 KFLASITLDELSREASVIRQ 139 >gi|23015553|ref|ZP_00055325.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 151 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 5/144 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ ++Y A H P I+ IA++ I + FL IL + ++ + +G+ Sbjct: 4 LSSKAKYGLKAMVYLARHEGLGPVLIADIAQSERIPKKFLDAILLEMKNQKLLSSKKGKG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L PA +I + D+V+ + C + DC +C + +V++ +A Sbjct: 64 GGYTLAMPAARIMVGDIVRVLDGPLAPVSCVSRSAYRACDDCTDEAACTIRAVMQDVRDA 123 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 +L ++ + R + + Sbjct: 124 IAAILDNTTLADMANRRGRPEPVL 147 >gi|146312669|ref|YP_001177743.1| DNA-binding transcriptional regulator IscR [Enterobacter sp. 638] gi|189044747|sp|A4WDB2|ISCR_ENT38 RecName: Full=HTH-type transcriptional regulator iscR gi|145319545|gb|ABP61692.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638] Length = 163 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|261405438|ref|YP_003241679.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281901|gb|ACX63872.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 139 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT DV++ E + + + ++ Sbjct: 61 AYGGYILSRDPASITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112 Query: 120 DVLTQYSIECLVR 132 +VL +++ L+ Sbjct: 113 EVLDSTTLDYLIN 125 >gi|30249423|ref|NP_841493.1| hypothetical protein NE1452 [Nitrosomonas europaea ATCC 19718] gi|30138786|emb|CAD85363.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC 19718] Length = 159 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + L+ AI H + P ++ I+E IS +L ++ L + +V++VRG Sbjct: 1 MRLTTKGRFAVTALLDIAIRHGNGPVALADISERQRISLSYLEQLFAKLRQRKLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D++++ D++ A +E +C K +C C + K F Sbjct: 61 PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWAKLNEIIF 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ LV +S Sbjct: 119 DYLGHVTLKRLVEEQSQ 135 >gi|88813391|ref|ZP_01128628.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus mobilis Nb-231] gi|88789357|gb|EAR20487.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus mobilis Nb-231] Length = 155 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A+H + P ++ I++ IS +L ++ L +A +V VRG Sbjct: 1 MKLSTKGRYAVTAMLDLALHENRGPVILADISQGQGISLSYLEQLFARLRRARLVTGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA IT+ DV+ A +++ + C + + + Sbjct: 61 PGGGYRLARPAQVITVADVIVAVDDNGDALGGYEGKLN----GAHCLTHDLWSELSAQIY 116 Query: 120 DVLTQYSIECLVRNRS 135 D L ++ L S Sbjct: 117 DFLNGITLADLASESS 132 >gi|256005574|ref|ZP_05430534.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|255990482|gb|EEU00604.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|316941505|gb|ADU75539.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 149 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A++ N ++ IAE IS +L ++ L K+G+V++ +G Sbjct: 1 MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 +GG L I + +++A E V + + C +V K + Sbjct: 61 AQGGYMLSEDPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 +++ ++E L + I Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142 >gi|167619786|ref|ZP_02388417.1| Rrf2 family protein [Burkholderia thailandensis Bt4] gi|257138937|ref|ZP_05587199.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 165 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ VV+ TE F + CF +C + +C L V A A Sbjct: 61 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L + S + + Sbjct: 121 FFAELDKHTIGELAQPASQLSMLLG 145 >gi|325286870|ref|YP_004262660.1| BadM/Rrf2 family transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322324|gb|ADY29789.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga lytica DSM 7489] Length = 135 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A D P I +IA+ IS+ FL IL L + G++ + +G+ Sbjct: 2 LSKKTKYGLKALTYLAQKEDRNPVPIGEIAQQNNISQKFLESILLMLRRTGVLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + DV++ E + C F DCP G+C + ++ K ++ Sbjct: 62 GGYYLIKEPSEILMTDVIRVLEGPIAMVPCVSLNFYEKCDDCPDEGTCSVHKLMLKVRDS 121 Query: 118 FFDVLTQYSIECLV 131 ++ ++ L+ Sbjct: 122 ALEIYKNTTLSNLI 135 >gi|311278538|ref|YP_003940769.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] gi|308747733|gb|ADO47485.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae SCF1] Length = 163 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|295097923|emb|CBK87013.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 163 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|294341067|emb|CAZ89464.1| putative Transcriptional regulator [Thiomonas sp. 3As] Length = 146 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 63/129 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D+G+R L+ A ++A IS L K+LQ L G V+T RG Sbjct: 1 MRLTSFSDFGLRALLVLAGSERETWSSVELATKLDISRDHLIKVLQRLAAGGYVQTTRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A I I +V++ E+ + ECF C L G C L L +A AF+ Sbjct: 61 GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120 Query: 121 VLTQYSIEC 129 L + ++ Sbjct: 121 ALNETTLAD 129 >gi|149197247|ref|ZP_01874299.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155] gi|149139793|gb|EDM28194.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155] Length = 132 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R+L++ A + + ++++E I++ + +I+ L K G + RGR Sbjct: 1 MRLNLKTDYALRILLHAAKNKEKLITSTEVSERYNITQANVTQIVNALKKKGYLNVKRGR 60 Query: 61 -RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P +++ I +++K E + +CF + + CP++ SC L ++ LNAF Sbjct: 61 YGGGFTLSDPPEEMRIGNIIKDIEPDLDLVQCFNNERNTCPVIDSCKLAGLMYSGLNAFL 120 Query: 120 DVLTQYSIECLV 131 + + + ++ ++ Sbjct: 121 EKMNEQTLADII 132 >gi|329926792|ref|ZP_08281200.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5] gi|328938992|gb|EGG35360.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5] Length = 139 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT DV++ E + + + ++ Sbjct: 61 AYGGYILSRDPASITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112 Query: 120 DVLTQYSIECLVR 132 +VL +++ L+ Sbjct: 113 EVLDSTTLDYLIN 125 >gi|289434795|ref|YP_003464667.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171039|emb|CBH27581.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633162|gb|EFS00046.1| Rrf2 family protein [Listeria seeligeri FSL N1-067] gi|313637744|gb|EFS03103.1| Rrf2 family protein [Listeria seeligeri FSL S4-171] Length = 140 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A + P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSSIK 138 DVL Q ++ L+++ S + Sbjct: 113 DVLDQTTLSDLLKHNSDTE 131 >gi|16803555|ref|NP_465040.1| hypothetical protein lmo1515 [Listeria monocytogenes EGD-e] gi|224499825|ref|ZP_03668174.1| hypothetical protein LmonF1_09119 [Listeria monocytogenes Finland 1988] gi|224501545|ref|ZP_03669852.1| hypothetical protein LmonFR_03342 [Listeria monocytogenes FSL R2-561] gi|254828251|ref|ZP_05232938.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829726|ref|ZP_05234381.1| hypothetical protein Lmon1_00155 [Listeria monocytogenes 10403S] gi|254898319|ref|ZP_05258243.1| hypothetical protein LmonJ_00850 [Listeria monocytogenes J0161] gi|254912189|ref|ZP_05262201.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936517|ref|ZP_05268214.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255025787|ref|ZP_05297773.1| hypothetical protein LmonocytFSL_04615 [Listeria monocytogenes FSL J2-003] gi|284801905|ref|YP_003413770.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578] gi|284995047|ref|YP_003416815.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923] gi|16410944|emb|CAC99593.1| lmo1515 [Listeria monocytogenes EGD-e] gi|258600639|gb|EEW13964.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609111|gb|EEW21719.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057467|gb|ADB68408.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578] gi|284060514|gb|ADB71453.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923] gi|293590162|gb|EFF98496.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313623689|gb|EFR93841.1| Rrf2 family protein [Listeria innocua FSL J1-023] Length = 140 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRN 133 DVL Q ++ L+++ Sbjct: 113 DVLDQTTLADLLKH 126 >gi|261340842|ref|ZP_05968700.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacter cancerogenus ATCC 35316] gi|288317268|gb|EFC56206.1| iron-sulfur cluster assembly transcription factor IscR [Enterobacter cancerogenus ATCC 35316] Length = 163 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|197251434|ref|YP_002147499.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226711621|sp|B5F1C1|ISCR_SALA4 RecName: Full=HTH-type transcriptional regulator iscR gi|197215137|gb|ACH52534.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 164 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|78355282|ref|YP_386731.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217687|gb|ABB37036.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 220 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ RT Y R+L+ A H D P S ++E +S F+ +I++PL KA ++ +VRG Sbjct: 52 MKLSARTRYAARLLLDLAQHATDAPRTASALSEQTGVSVQFIEQIIKPLKKAKLINSVRG 111 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +IT+ +V E + +C +++ C +C + Sbjct: 112 AAGGHMLSRAPSEITLAQIVDVMEGGIRLTDCCTDNEL-CTRTPTCKTRVAWLRISEVLE 170 Query: 120 DVLTQYSIECLVRNRS 135 L ++E L+ Sbjct: 171 RELNSITLEDLMSGEH 186 >gi|315282426|ref|ZP_07870843.1| Rrf2 family protein [Listeria marthii FSL S4-120] gi|313613931|gb|EFR87658.1| Rrf2 family protein [Listeria marthii FSL S4-120] Length = 140 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRN 133 DVL Q ++ L+++ Sbjct: 113 DVLDQTTLADLLKH 126 >gi|42780147|ref|NP_977394.1| hypothetical protein BCE_1071 [Bacillus cereus ATCC 10987] gi|42736065|gb|AAS40002.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 168 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KAGIV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|318607414|emb|CBY28912.1| nitrite-sensitive transcriptional repressor NsrR [Yersinia enterocolitica subsp. palearctica Y11] Length = 125 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ ISQ+ E +S + KI+ L + G+V VRG+ GG+RL +PADQI I D Sbjct: 3 SLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPADQIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L VL +A+ +F + L Y++ +V++ + + Sbjct: 63 VVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVQDNTPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|315301845|ref|ZP_07872874.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596] gi|313629782|gb|EFR97886.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596] Length = 138 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKTVGVKELAIKQNVSPTYLSKVLTMLVKASFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +PA+ I+ LDV++A E C K C + V+ A Sbjct: 61 VNGGYKLAKPANDISFLDVIQAIEGKTAFFHC--DPKNHAESKPHCLIGEVMDNAEQQME 118 Query: 120 DVLTQYSIECLV 131 L++ +I +V Sbjct: 119 AYLSEQTIGSIV 130 >gi|326790786|ref|YP_004308607.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium lentocellum DSM 5427] gi|326541550|gb|ADZ83409.1| transcriptional regulator, BadM/Rrf2 family [Clostridium lentocellum DSM 5427] Length = 151 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A+H+ + IA+ +S ++ ++ L KAGIV++++G Sbjct: 1 MKISTKARYGLRALVDLAVHSSGDQVPLISIAQRQELSANYMEQVFSSLKKAGIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALN 116 +GG L + + IT+ +V++A E + E + + S C V K Sbjct: 61 SQGGYILAKRSCDITVGEVIRAIEGEILIVEEEEARDDASLIYNSMKQCLQEQVWSKITE 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + V+ ++E L+++ + + Sbjct: 121 SICQVIDHITLEDLMKDYEKLNQ 143 >gi|254252225|ref|ZP_04945543.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158] gi|124894834|gb|EAY68714.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158] Length = 173 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+T+RGR Sbjct: 3 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTIRGR 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118 GG+RL + Q+T+ VV+ATE F + CF++ C + C L V A +AF Sbjct: 63 NGGLRLFPESLQLTVGQVVRATENDFALVGCFSAEAESRRCVIELQCRLKGVFAAARDAF 122 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 F L ++++ L SS+ + Sbjct: 123 FAELDRHTVGELAAPASSLVSLLG 146 >gi|296104217|ref|YP_003614363.1| putative FeS cluster assembly transcriptional regulator IscR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058676|gb|ADF63414.1| putative FeS cluster assembly transcriptional regulator IscR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 163 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|229094650|ref|ZP_04225696.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|228688732|gb|EEL42582.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] Length = 168 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KAGIV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|52144351|ref|YP_082476.1| transcriptional regulator [Bacillus cereus E33L] gi|51977820|gb|AAU19370.1| transcriptional regulator [Bacillus cereus E33L] Length = 168 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KAGIV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|16761458|ref|NP_457075.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765864|ref|NP_461479.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140845|ref|NP_804187.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412578|ref|YP_149653.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181108|ref|YP_217525.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612691|ref|YP_001586656.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549428|ref|ZP_02343187.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992670|ref|ZP_02573766.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232118|ref|ZP_02657176.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238283|ref|ZP_02663341.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243329|ref|ZP_02668261.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261413|ref|ZP_02683386.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466699|ref|ZP_02700553.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821475|ref|ZP_02833475.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444495|ref|YP_002041806.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448157|ref|YP_002046605.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472929|ref|ZP_03078913.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737710|ref|YP_002115607.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197261796|ref|ZP_03161870.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361513|ref|YP_002141149.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243196|ref|YP_002216610.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387218|ref|ZP_03213830.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929440|ref|ZP_03220514.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353643|ref|YP_002227444.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857952|ref|YP_002244603.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161574|ref|ZP_03347284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416856|ref|ZP_03350000.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425310|ref|ZP_03358060.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580754|ref|ZP_03362580.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622388|ref|ZP_03375171.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646424|ref|ZP_03376477.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855574|ref|ZP_03383814.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582916|ref|YP_002636714.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912665|ref|ZP_04656502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825402|ref|ZP_06544639.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|75481667|sp|Q57LG8|ISCR_SALCH RecName: Full=HTH-type transcriptional regulator iscR gi|81362034|sp|Q5PNG2|ISCR_SALPA RecName: Full=HTH-type transcriptional regulator iscR gi|81416273|sp|Q7CQ10|ISCR_SALTY RecName: Full=HTH-type transcriptional regulator iscR gi|81849081|sp|Q8XF25|ISCR_SALTI RecName: Full=HTH-type transcriptional regulator iscR gi|189044751|sp|A9N1X3|ISCR_SALPB RecName: Full=HTH-type transcriptional regulator iscR gi|226711622|sp|B5FR87|ISCR_SALDC RecName: Full=HTH-type transcriptional regulator iscR gi|226711623|sp|B5R5A3|ISCR_SALEP RecName: Full=HTH-type transcriptional regulator iscR gi|226711624|sp|B5RD13|ISCR_SALG2 RecName: Full=HTH-type transcriptional regulator iscR gi|226711625|sp|B4TDB7|ISCR_SALHS RecName: Full=HTH-type transcriptional regulator iscR gi|226711626|sp|B4T1C0|ISCR_SALNS RecName: Full=HTH-type transcriptional regulator iscR gi|226711627|sp|B5BAW5|ISCR_SALPK RecName: Full=HTH-type transcriptional regulator iscR gi|226711628|sp|B4TRX7|ISCR_SALSV RecName: Full=HTH-type transcriptional regulator iscR gi|254806056|sp|C0PYK6|ISCR_SALPC RecName: Full=HTH-type transcriptional regulator iscR gi|25303602|pir||AG0824 conserved hypothetical protein STY2790 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421089|gb|AAL21438.1| hypothetical protein STM2544 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503758|emb|CAD02747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136470|gb|AAO68036.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126835|gb|AAV76341.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128741|gb|AAX66444.1| believed to be involved in assembly of Fe-S clusters [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362055|gb|ABX65823.1| hypothetical protein SPAB_00388 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403158|gb|ACF63380.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406461|gb|ACF66680.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459293|gb|EDX48132.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713212|gb|ACF92433.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630843|gb|EDX49435.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092989|emb|CAR58421.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240051|gb|EDY22671.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288800|gb|EDY28173.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937712|gb|ACH75045.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604316|gb|EDZ02861.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321159|gb|EDZ06359.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273424|emb|CAR38399.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325358|gb|EDZ13197.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329099|gb|EDZ15863.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333691|gb|EDZ20455.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337574|gb|EDZ24338.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341984|gb|EDZ28748.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349628|gb|EDZ36259.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709755|emb|CAR34107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467443|gb|ACN45273.1| hypothetical protein SPC_1107 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247740|emb|CBG25568.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994666|gb|ACY89551.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159093|emb|CBW18607.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913533|dbj|BAJ37507.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087042|emb|CBY96811.1| HTH-type transcriptional regulator iscR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222751|gb|EFX47822.1| Iron-sulfur cluster regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613314|gb|EFY10256.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620482|gb|EFY17347.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625050|gb|EFY21879.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629506|gb|EFY26282.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633893|gb|EFY30632.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635499|gb|EFY32210.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639825|gb|EFY36504.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644289|gb|EFY40833.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652256|gb|EFY48613.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654836|gb|EFY51153.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658236|gb|EFY54502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661693|gb|EFY57911.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669673|gb|EFY65819.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673320|gb|EFY69425.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674891|gb|EFY70978.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682914|gb|EFY78932.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685575|gb|EFY81570.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715598|gb|EFZ07169.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130874|gb|ADX18304.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194686|gb|EFZ79876.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200370|gb|EFZ85451.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201270|gb|EFZ86337.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208340|gb|EFZ93280.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211584|gb|EFZ96422.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216016|gb|EGA00748.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221911|gb|EGA06305.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225596|gb|EGA09823.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229313|gb|EGA13437.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235372|gb|EGA19456.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237442|gb|EGA21505.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245197|gb|EGA29198.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248771|gb|EGA32698.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254049|gb|EGA37870.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254914|gb|EGA38706.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262019|gb|EGA45584.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267803|gb|EGA51284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269638|gb|EGA53090.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624365|gb|EGE30710.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628745|gb|EGE35088.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989471|gb|AEF08454.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 164 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R + Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEVL 136 >gi|152971394|ref|YP_001336503.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895988|ref|YP_002920724.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae NTUH-K2044] gi|262040270|ref|ZP_06013521.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007731|ref|ZP_08306057.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. MS 92-3] gi|189044749|sp|A6TCF2|ISCR_KLEP7 RecName: Full=HTH-type transcriptional regulator iscR gi|150956243|gb|ABR78273.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548306|dbj|BAH64657.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042379|gb|EEW43399.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535344|gb|EGF61827.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella sp. MS 92-3] Length = 163 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + +V+ A +ES C C ++ R Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSERLT 118 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ LV N+ + Sbjct: 119 GFLNNITLGELVNNQEIL 136 >gi|315649593|ref|ZP_07902678.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453] gi|315275066|gb|EFU38441.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453] Length = 133 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K TDY + +++ A P + Q+AE +S +L KIL LVKAG++E++ G Sbjct: 1 MKYSKATDYALHTMLFLTAATPQKPIGVQQLAERQSVSPTYLSKILTKLVKAGMIESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R + I+ LD++ A E S + +C H CP + V+ A Sbjct: 61 VNGGYRLKRNWEDISFLDIIHAIEGSASLFDCSFDHGPGCP------IQKVVLSAEEKME 114 Query: 120 DVLTQYSIECLVRNRS 135 ++L + LVR + Sbjct: 115 ELLRNQKMSDLVREHN 130 >gi|53719117|ref|YP_108103.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|53723605|ref|YP_103037.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|76811401|ref|YP_333785.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121599434|ref|YP_993187.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|124383404|ref|YP_001026037.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126442087|ref|YP_001059260.1| Rrf2 family protein [Burkholderia pseudomallei 668] gi|126450910|ref|YP_001080694.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126452205|ref|YP_001066527.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134277214|ref|ZP_01763929.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|167003463|ref|ZP_02269249.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|167738224|ref|ZP_02410998.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167815414|ref|ZP_02447094.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167823823|ref|ZP_02455294.1| putative transcriptional regulator [Burkholderia pseudomallei 9] gi|167845364|ref|ZP_02470872.1| putative transcriptional regulator [Burkholderia pseudomallei B7210] gi|167893908|ref|ZP_02481310.1| putative transcriptional regulator [Burkholderia pseudomallei 7894] gi|167902361|ref|ZP_02489566.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC 13177] gi|167910597|ref|ZP_02497688.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|167918624|ref|ZP_02505715.1| putative transcriptional regulator [Burkholderia pseudomallei BCC215] gi|217421524|ref|ZP_03453028.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|237812583|ref|YP_002897034.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|238563651|ref|ZP_04610659.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|242317014|ref|ZP_04816030.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254177455|ref|ZP_04884110.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|254179517|ref|ZP_04886116.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|254189092|ref|ZP_04895603.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|254197503|ref|ZP_04903925.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|254199984|ref|ZP_04906350.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|254206317|ref|ZP_04912669.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|254260786|ref|ZP_04951840.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] gi|254297396|ref|ZP_04964849.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|254358271|ref|ZP_04974544.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|52209531|emb|CAH35484.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52427028|gb|AAU47621.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|76580854|gb|ABA50329.1| Transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121228244|gb|ABM50762.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|124291424|gb|ABN00693.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|126221580|gb|ABN85086.1| Rrf2 family protein [Burkholderia pseudomallei 668] gi|126225847|gb|ABN89387.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|126243780|gb|ABO06873.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247] gi|134250864|gb|EBA50943.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|147749580|gb|EDK56654.1| putative transcriptional regulator [Burkholderia mallei FMH] gi|147753760|gb|EDK60825.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|148027398|gb|EDK85419.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|157807741|gb|EDO84911.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|157936771|gb|EDO92441.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|160698494|gb|EDP88464.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|169654244|gb|EDS86937.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|184210057|gb|EDU07100.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|217395266|gb|EEC35284.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|237503358|gb|ACQ95676.1| putative transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|238520270|gb|EEP83732.1| putative transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|242140253|gb|EES26655.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|243061024|gb|EES43210.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|254219475|gb|EET08859.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] Length = 165 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ +VV+ TE F + CFA C + +C L V A A Sbjct: 61 NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHRSCVIQSACRLRGVFAAAREA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L + S + + Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145 >gi|268317559|ref|YP_003291278.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] gi|262335093|gb|ACY48890.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] Length = 142 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +YG+R ++Y A +++D I +I E IS FL KI Q L +AG+++++RG Sbjct: 2 FSRACEYGLRAVLYLASLNHDGYVSIREIGERLNISVPFLTKIFQKLTQAGLMQSLRGPS 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GGV R ++IT+ DV+ A + EC C C L ++ N ++ Sbjct: 62 GGVMFARSPEEITLFDVIVAIDGPDLFTECVLGL-PGCGEATPCPLHDHWKEVRNPIRNL 120 Query: 122 LTQYSIECLVRNRSSIKKIFNA 143 ++ + R + A Sbjct: 121 FASTTLADMARRMQEARLRLTA 142 >gi|93006479|ref|YP_580916.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394157|gb|ABE75432.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter cryohalolentis K5] Length = 170 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ A+ + +S IA+ IS +L ++ L K G+V ++ Sbjct: 1 MRLTTRGRYAVTALLDLALQTSQQESAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L +P DQI ++ ++ A +ES +C + DC C + N Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC--EGRGDCQGGTMCLTHDLWCALSNH 118 Query: 118 FFDVLTQYSIECLVR 132 L ++ L+ Sbjct: 119 VEQYLKNITLAQLLN 133 >gi|260893739|ref|YP_003239836.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] gi|260865880|gb|ACX52986.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii KC4] Length = 137 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Query: 1 MHLTKR-TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +R T+Y IR L++ A +IAEA I FL KILQ L +AG+V + RG Sbjct: 1 MELIRRNTEYAIRALVHLAACKGEVVSAKEIAEAQDIPIEFLQKILQRLGRAGLVVSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I +L+V+ + V +CF + C +C L Sbjct: 61 AAGGFSLARKPSEINLLEVITVMQGRPAVNKCFLGREA-CERAPTCRLKYNWLVLEQKIG 119 Query: 120 DVLTQYSIECLVRN 133 + L +++ LV Sbjct: 120 EFLADVTLQDLVDQ 133 >gi|167719226|ref|ZP_02402462.1| putative transcriptional regulator [Burkholderia pseudomallei DM98] Length = 162 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 GG+RL + +T+ +VV+ TE F + CFA C + +C L V A A Sbjct: 61 NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHRSCVIQSACRLRGVFAAAREA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 FF L +++I L + S + + Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145 >gi|148555866|ref|YP_001263448.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501056|gb|ABQ69310.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 179 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H+T +YGI L++ D +AE IS FL KI L KAGIV G R Sbjct: 3 HITTSVEYGIHCLLWLVGSGDRAMSSRDLAELQGISPSFLAKIFPKLEKAGIVVASEGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RPAD I+ LD+V A E + +C FA G C + V+ Sbjct: 63 GGYRLARPADAISFLDIVDAIEGEKPLFDCQEVRERCALFAGGMPAWATDGVCAVHGVML 122 Query: 113 KALNAFFDVLTQYSIECLV 131 +A A D L S++ + Sbjct: 123 QAEKAMRDALAAQSLQDVA 141 >gi|157371753|ref|YP_001479742.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans 568] gi|157323517|gb|ABV42614.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 180 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 9/134 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T +YGI L++ N ++AE IS FL KI L KAGIV G RG Sbjct: 4 ITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVRG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113 G RL RPAD+IT L+++ A E + +C F + D L G C + +V+ + Sbjct: 64 GYRLARPADEITFLEIIDAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVMLQ 123 Query: 114 ALNAFFDVLTQYSI 127 A A D L ++ Sbjct: 124 AEKAMRDALAVQTL 137 >gi|73542904|ref|YP_297424.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha JMP134] gi|72120317|gb|AAZ62580.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha JMP134] Length = 150 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY A + P I+++ + +S L K+ L K G + RG Sbjct: 1 MQLTRFSDYALRLLMYVARADGSRPITIAEVGQQFEVSHHHLVKVAARLSKLGWITATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ADQ+TI +++ E V +C C L G+C L L +A AF+ Sbjct: 61 RHGGLELGPQADQLTIGTILRELEGHKPVIDC---DDPPCALKGNCRLRRALDEAEQAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ + ++++ Sbjct: 118 RSLDTVTLADVTGSQTA 134 >gi|332295070|ref|YP_004436993.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium narugense DSM 14796] gi|332178173|gb|AEE13862.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium narugense DSM 14796] Length = 141 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ +T YG+R L A + Y Q+A+ IS +L ++L L GIVE+ +G Sbjct: 3 KLSTKTRYGLRALCQLAQVKKGYTIPAHQLAKDQEISLSYLEQVLNVLKHHGIVESFKGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L +I + DV++ E + +C A C C ++ +K N Sbjct: 63 GGGYKLNVDPKKIILKDVIEILEGPVLITDCSADPS-KCHRAEDCLTRALWQKIGNQVNS 121 Query: 121 VLTQYSIECLVRNR 134 L + ++ LV+ Sbjct: 122 FLGKITLNDLVKKN 135 >gi|170741067|ref|YP_001769722.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp. 4-46] gi|168195341|gb|ACA17288.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp. 4-46] Length = 157 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT+ TDY +R L+Y + + I++IA A ISE L K++ L + G++ T RGR Sbjct: 1 MHLTRYTDYALRTLIYLGLREPQQSSIAEIARAYGISENHLTKVVHQLGRLGLIRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + VV+ TEE + ECFAS C + SC L L +AL AF Sbjct: 61 GGGLRLGKPPSEIVVGAVVRQTEEDLALVECFASSA--CAITASCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLVRNRS--SIKKIFN 142 VL Y++ L+ + S I ++ Sbjct: 119 VLDGYTLADLLEDGSGPEIARLLG 142 >gi|325102989|ref|YP_004272643.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324971837|gb|ADY50821.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 144 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGIR L+ H D P IS IAE I + FL +IL L AG + + +G Sbjct: 2 LSKKTKYGIRALIALGEHYDKEPVNISFIAETEKIPKKFLEQILLELRNAGFLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + I ++ V++ T C F +C +CG+ R +A Sbjct: 62 GGYSLLKNPKDINLVQVMRITGGPIAQLPCVSLNFYQRCEECKDEENCGIRDTFRDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 +L++ +I L+ + + Sbjct: 122 TLKILSETTIADLIAKEKGLPR 143 >gi|313634571|gb|EFS01056.1| putative transcriptional regulator [Listeria seeligeri FSL N1-067] Length = 138 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +PA I+ LDV++A E C K C + V+ A+ Sbjct: 61 VNGGYKLAKPATNISFLDVIQAIEGKTAFFHC--DPKNHAETKSHCLIGEVMGNAVQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ +I +V Sbjct: 119 DYLSKQTIGSIV 130 >gi|291548060|emb|CBL21168.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. SR1/5] Length = 142 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG++ L+ ++++ + IA IS +L +++ L KAG+V++VRG Sbjct: 1 MKLSTRAKYGLKALIDLGLYSEKEAVSLQSIAGRQNISVSYLEQLMALLKKAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 GG L RPA++I++ D+++ E A C C C V ++ ++ Sbjct: 61 AAGGYFLGRPAEEISVGDILRVLEGGLEAATCPGTEGDGGCQGSDLCVAKLVWKRINDSI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 D + + L+ I + Sbjct: 121 TDAVDTLMLSELIEESRRIHE 141 >gi|3659616|gb|AAC61685.1| CDG1D [Gluconacetobacter xylinus] Length = 138 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR L+Y + I +IA IS+ L K++ L G++ RGR Sbjct: 1 MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAATHRISQNHLVKVVNRLSSNGVILARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L QI I D+++ E + C + C L +C L + K++NAF Sbjct: 61 SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLQGLFAKSVNAFM 120 Query: 120 DVLTQYSIECLVRNRSSI 137 VL + ++ ++ + Sbjct: 121 SVLDRITLHDILHEPKKL 138 >gi|91795047|ref|YP_564698.1| hypothetical protein Sden_3702 [Shewanella denitrificans OS217] gi|91717049|gb|ABE56975.1| transcriptional regulator, BadM/Rrf2 family [Shewanella denitrificans OS217] Length = 151 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 5/139 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDYGIR+LMY AI + RI +I + +S + KI+ L K G ++T+R Sbjct: 1 MQLTRYTDYGIRILMYLAIQPERTELFRIGEITDVFDLSANHVAKIVNHLGKLGYLKTIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG +L A I + +V+ E S C + C C L S+L KAL+A+ Sbjct: 61 GKHGGFKLVTSASDINLGTLVRQLENSLVQVNCAEPY---CRFTPVCNLKSMLAKALSAY 117 Query: 119 FDVLTQYSIECLVRNRSSI 137 VL Y + ++ N + Sbjct: 118 LAVLDSYYLSDVIDNSDKL 136 >gi|46907743|ref|YP_014132.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47094363|ref|ZP_00232058.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|217964338|ref|YP_002350016.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|226224116|ref|YP_002758223.1| hypothetical protein Lm4b_01525 [Listeria monocytogenes Clip81459] gi|254852139|ref|ZP_05241487.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|254931450|ref|ZP_05264809.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|290893874|ref|ZP_06556852.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|300764819|ref|ZP_07074809.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017] gi|46881012|gb|AAT04309.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017261|gb|EAL08099.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|217333608|gb|ACK39402.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|225876578|emb|CAS05287.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605442|gb|EEW18050.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|290556591|gb|EFD90127.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|293583001|gb|EFF95033.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|300514495|gb|EFK41552.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017] gi|307571096|emb|CAR84275.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99] gi|313608684|gb|EFR84520.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208] gi|328465553|gb|EGF36782.1| hypothetical protein LM1816_06485 [Listeria monocytogenes 1816] gi|328474876|gb|EGF45676.1| hypothetical protein LM220_11812 [Listeria monocytogenes 220] gi|332311957|gb|EGJ25052.1| HTH-type transcriptional regulator CymR [Listeria monocytogenes str. Scott A] Length = 140 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRN 133 DVL Q ++ L+++ Sbjct: 113 DVLDQTTLADLLKH 126 >gi|209548376|ref|YP_002280293.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534132|gb|ACI54067.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 148 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPRHG 140 >gi|218885726|ref|YP_002435047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756680|gb|ACL07579.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 180 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +T Y R+L+ A+H + P + +++ ++ F+ +IL+ L + G+ + RG Sbjct: 1 MKLAAKTRYAARILLALAMHGEESPMTTTALSQHTGVTVQFIEQILKTLKRGGLTRSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R ++IT+ ++V+ E + C + C SC S +A A Sbjct: 61 ASGGHMLARTPEEITLSEIVRLMEGGIQLTVCCSGDANACARRASCLTRSAWVRASQALE 120 Query: 120 DVLTQYSIECLVRNRSSI 137 L + ++ L+ + Sbjct: 121 HSLEETTLATLMEGDQPL 138 >gi|297568160|ref|YP_003689504.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio alkaliphilus AHT2] gi|296924075|gb|ADH84885.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio alkaliphilus AHT2] Length = 130 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IR + A H I IA I FL KILQ L +A IVE+ RG Sbjct: 1 MQITRATDYAIRCVYCLARHPGELWMIDDIAREMEIPNSFLAKILQKLARAQIVESQRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL R ++I++ DVV ATE + C + C V C + V + Sbjct: 61 RGGFRLARAPEEISLHDVVVATEGPVAMNVCTLEGE-RCDRVEKCRVHPVWVTIRQEVEE 119 Query: 121 VLTQYSIECLV 131 L + + Sbjct: 120 ALQKRKFADFL 130 >gi|169831709|ref|YP_001717691.1| BadM/Rrf2 family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638553|gb|ACA60059.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Desulforudis audaxviator MP104C] Length = 151 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YG R L+ A H + P + IA +S+ +L +++ L AG+V ++RG Sbjct: 1 MRVSTRVRYGTRALVDIAEHHGNGPVCLRDIARRQKVSQPYLEQLILLLKAAGLVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L R +I++++V+ V +C C G+CG+ + +A Sbjct: 61 ARGGFVLARDPAEISMIEVMTTLGWESEVVDCVGDPG-SCSRAGACGMRDFWCRLSDAVS 119 Query: 120 DVLTQYSIECLVRNRSS 136 V+ ++ L++ ++ Sbjct: 120 KVVGSTTLADLMQEQAE 136 >gi|254824426|ref|ZP_05229427.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|293593662|gb|EFG01423.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] Length = 140 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRN 133 DVL Q ++ L+++ Sbjct: 113 DVLDQTTLADLLKH 126 >gi|78485133|ref|YP_391058.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363419|gb|ABB41384.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira crunogena XCL-2] Length = 145 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK+TD+ RVL+Y A + I I++ IS+ L K++Q LV G+V +VRG Sbjct: 1 MQLTKQTDFAFRVLIYLASKKTGELSNIQMISDRYEISKSHLMKVVQKLVSHGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L + +IT+ +V++ E + C + C + C L L +A N + Sbjct: 61 QHGGIYLEKELHEITLREVIELMEATLTPVNC---DEPGCKIKEVCQLKIYLVEAQNQYL 117 Query: 120 DVLTQYSIECLVRN 133 L Q+++ +V + Sbjct: 118 TYLEQFTLADIVND 131 >gi|253574913|ref|ZP_04852253.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845959|gb|EES73967.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 145 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + YG+ ++M A + + P + IAE +SE +L +++ PL AG+V++VRG Sbjct: 8 KISTKGRYGLTIMMELAAKYGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRGA 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + A +IT D+++ E + + + ++ + Sbjct: 68 YGGYILSKEASEITAGDIIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIAE 119 Query: 121 VLTQYSIECLVR 132 VL ++E LV Sbjct: 120 VLDSTTLENLVN 131 >gi|73749368|ref|YP_308607.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1] gi|147669978|ref|YP_001214796.1| BadM/Rrf2 family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289433326|ref|YP_003463199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Dehalococcoides sp. GT] gi|73661084|emb|CAI83691.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1] gi|146270926|gb|ABQ17918.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp. BAV1] gi|288947046|gb|ADC74743.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp. GT] Length = 148 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R + + + A+H + P I +A+ ISE +L ++ PL AG+V +VRG Sbjct: 1 MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I + D+VKATE S +EC ++ C C +V + A Sbjct: 61 ANGGFVLARDPKEIKLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLRIKKATD 119 Query: 120 DVLTQYSIECLVRN 133 ++L +++ LV+ Sbjct: 120 EILDSINLDNLVQQ 133 >gi|229918428|ref|YP_002887074.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469857|gb|ACQ71629.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp. AT1b] Length = 135 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A D P + +IA + E +L +++ PL G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIALARETDNKPLSLKKIAARHELPEHYLEQLIGPLRNGGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L +P +++T ++++ E + E + + K A Sbjct: 61 AYGGYQLVKPPEEVTAGEIIRLLEGPLAIVEDSEADDA--------VKRKLWDKIKEAID 112 Query: 120 DVLTQYSIECLVRNRSS 136 VL + ++ L S Sbjct: 113 TVLDETTLADLAEEESD 129 >gi|120602252|ref|YP_966652.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120562481|gb|ABM28225.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] Length = 188 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +T Y R+L+ A+H + P + ++E ++ F+ +IL+ L + G+ + RG Sbjct: 19 MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 78 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R D I++ D+V+ E + C C C S KA A Sbjct: 79 AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 138 Query: 120 DVLTQYSIECLVRNR 134 L + S+ L+ Sbjct: 139 AALDETSLTALMSGE 153 >gi|220922121|ref|YP_002497422.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946727|gb|ACL57119.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium nodulans ORS 2060] Length = 153 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y + I+++A A ISE L K++ L + G+V T RGR Sbjct: 1 MRLTCFTDYALRTLIYLGTAEPRQSSIAEVARAYGISENHLVKVVHQLGRLGLVRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + A +I I +VV+ATEE + +CFA C + +C L +VL +AL AFF Sbjct: 61 GGGLRLGKAAAEIRIGEVVRATEEDLALVQCFAGG--SCAITPACRLRNVLGEALAAFFA 118 Query: 121 VLTQYSIECLVRNRSS 136 VL +Y++ L+ + Sbjct: 119 VLDRYTLADLLEPHAG 134 >gi|116872944|ref|YP_849725.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741822|emb|CAK20946.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 140 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYILNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRN 133 DVL Q ++ L+++ Sbjct: 113 DVLDQTTLADLLKH 126 >gi|304440321|ref|ZP_07400210.1| iron-sulfur cluster assembly transcription regulator IscR [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371073|gb|EFM24690.1| iron-sulfur cluster assembly transcription regulator IscR [Peptoniphilus duerdenii ATCC BAA-1640] Length = 131 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + + D P IS IA +SE +L ++ L A ++++ RG Sbjct: 1 MKLSTKGRYGLMAMYRLMESYGDGPQSISNIAMKENLSESYLEQLFSLLRNAKLIKSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +I I ++++A E + ++ C + CP C +L Sbjct: 61 VNGGYSLAKDPKEIKIGEIIEALEGNMELSCC--QKDVVCPKSEECPTRDILDVVQFKIE 118 Query: 120 DVLTQYSIECL 130 +VL ++E + Sbjct: 119 NVLDSMTLEDM 129 >gi|308070540|ref|YP_003872145.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305859819|gb|ADM71607.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 132 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + ++ A + P + Q+AE+ +S +L KIL LVKAG++E+V G Sbjct: 1 MKFTKATNYALHTMLMLVADSSVKPVGVQQLAESQNVSPTYLSKILTRLVKAGMIESVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R D IT LD++ A E + + EC H C + +V+R+A Sbjct: 61 ANGGYRLSRHKDDITFLDIIHAIEGTNSLFECDFVH------GSECLIQAVMREAEEKME 114 Query: 120 DVLTQYSIECLVRNRSSI 137 L + L + ++ + Sbjct: 115 RHLKNTKLVDLAQKQTQV 132 >gi|218661187|ref|ZP_03517117.1| putative transcriptional regulator protein [Rhizobium etli IE4771] gi|218675215|ref|ZP_03524884.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 148 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPRHG 140 >gi|218463759|ref|ZP_03503850.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli Kim 5] Length = 148 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPRQG 140 >gi|218508224|ref|ZP_03506102.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] gi|327194314|gb|EGE61175.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 148 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPRHG 140 >gi|33415325|gb|AAQ18178.1| putative 15.3 kDa negative regulatory protein [Rhodobacter capsulatus] Length = 140 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL TD+ +R L++ A + ++ IS L K++Q LV G T++G Sbjct: 1 MHLLASTDFALRALLFLATDPERLVNTETMSRDLGISRNHLQKVVQALVAGGFARTIKGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGGVRL PA +I I VV+ EE + CFA C + CGL VL A + ++D Sbjct: 61 RGGVRLAHPATEIRIGAVVRHFEEHQPIVACFAPEG-QCVIEPICGLKGVLAGAQSQYYD 119 Query: 121 VLTQYSIECLVRNRS 135 L Y++ +R Sbjct: 120 FLNGYTLADCLRRPR 134 >gi|170743400|ref|YP_001772055.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197674|gb|ACA19621.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp. 4-46] Length = 150 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ L++ A + ++++A A I + FL IL L AG+V + +G Sbjct: 2 LTNKGKYGLKALVHLAALPPGTRIGVAEVAAANNIPKKFLDAILGELRNAGLVHSRKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RP ++I + V+ + C + DCP G+C + V+ + N+ Sbjct: 62 GGYALARPPEEIRVGHAVRVLDGPLAPVPCASRTAYRPCEDCPDEGACAVRLVMLEVRNS 121 Query: 118 FFDVLTQYSIECL 130 VL ++ + Sbjct: 122 IAGVLDTLTLAQM 134 >gi|78223114|ref|YP_384861.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194369|gb|ABB32136.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 153 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 5/142 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ L+Y A D P I+ +A I + FL IL L AG++++ +G+ Sbjct: 2 ISKKTKYALKALLYLAREYDRGPILIADLAREERIPKKFLELILLALKNAGVLQSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L P +IT+ V++ E C + +C SCG+ V++ +A Sbjct: 62 GGYYLAHPPREITMGKVIRTLEGPLAPVPCVSETAYARCEECDDEWSCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 +L ++ ++ K+ Sbjct: 122 MAQILDNATLAAVLERIEQEKQ 143 >gi|291280535|ref|YP_003497370.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290755237|dbj|BAI81614.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans SSM1] Length = 142 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T R+ Y IR L A+ P + +++E IS +L ++ L+KAGIV +VR Sbjct: 1 MKVTTRSRYAIRALYALALAGGDKTPVSLKKVSEMESISMKYLERLFSNLMKAGIVNSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG +P ++IT+LDVV+ + +C C C + + N Sbjct: 61 GIYGGYIFSKPLNEITLLDVVEVMDGVIKPVDCVEEEG--CDRSRDCSINWIWFDLKNII 118 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 + L++ + LV + K+ Sbjct: 119 ENYLSKITFYDLVYGLKNKYKV 140 >gi|23097775|ref|NP_691241.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22775999|dbj|BAC12276.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 141 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A I + ++AE +S +L KIL LVK+G++E+ G Sbjct: 1 MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R AD IT LDV++A E + C H D C + + + +A Sbjct: 61 AKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMK 120 Query: 120 DVLTQ---YSIECLVRNRSSI 137 + L + I L+R++ ++ Sbjct: 121 ESLDRKYIVDIAKLMRSQKNL 141 >gi|116251030|ref|YP_766868.1| Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255678|emb|CAK06759.1| putative Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 148 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L G+V + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I + + S Sbjct: 122 TRKVLFSTTIADAIAPKHS 140 >gi|16800618|ref|NP_470886.1| hypothetical protein lin1550 [Listeria innocua Clip11262] gi|16414037|emb|CAC96781.1| lin1550 [Listeria innocua Clip11262] Length = 140 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRN 133 DVL Q ++ L+++ Sbjct: 113 DVLDQTTLSDLLKH 126 >gi|297617120|ref|YP_003702279.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] gi|297144957|gb|ADI01714.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus lipocalidus DSM 12680] Length = 133 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++T+Y +RV++ A + +I+E I E+FL K +Q L +AG+V T RG Sbjct: 1 MQITRQTEYAVRVMLELARLPKGEMLSAREISEKQQIPEVFLKKTIQILARAGLVHTQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGGV+L + ++T+ D++ A E + C +C C + VL +A A Sbjct: 61 PRGGVQLAKDPTEVTLADILVAVEGPLALNVCLVPG-YECVNKPDCKVHRVLARAQKALV 119 Query: 120 DVLTQYSIECLVR 132 L+ S+ L Sbjct: 120 SELSCNSLAELAE 132 >gi|39996447|ref|NP_952398.1| Rrf2 family protein [Geobacter sulfurreducens PCA] gi|39983327|gb|AAR34721.1| Rrf2 family protein [Geobacter sulfurreducens PCA] Length = 153 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ ++Y A D P I+ +A I + FL IL L AG++++ +G+ Sbjct: 2 ISKKTKYALKAMLYLARERDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L + +I++ +++ E +C + +C SCG+ V++ +A Sbjct: 62 GGYYLAQSPREISMGRIIRILEGPLAPVQCVSETSYSRCEECDDEWSCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRN 133 +L ++ ++ Sbjct: 122 MATILDGATLADVLER 137 >gi|315303269|ref|ZP_07873911.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] gi|313628359|gb|EFR96850.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] Length = 140 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A + P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++IT D+++ E + E + + + NA Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESIEDEEA--------AQRELWTRMRNAVR 112 Query: 120 DVLTQYSIECLVRNRSS 136 DVL Q ++ L+++ S Sbjct: 113 DVLDQTTLADLLKHTSD 129 >gi|296447558|ref|ZP_06889480.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296254946|gb|EFH02051.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 153 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ ++Y A ++ IA A I + FL IL L AG V + +G+ Sbjct: 2 LTKKAKYGLKAMVYLAGFEPGRTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RP + I + V++ + +C + DC C + V+ +A +A Sbjct: 62 GGYTLARPPEDIRVGAVIRVLDGPLAPIQCASRTVYRRCDDCENEALCTVRLVMVEARDA 121 Query: 118 FFDVLTQYSIECL 130 +VL ++ + Sbjct: 122 IANVLDNRTLAQM 134 >gi|258541650|ref|YP_003187083.1| BadM/Rrf2 family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632728|dbj|BAH98703.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01] gi|256635785|dbj|BAI01754.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-03] gi|256638840|dbj|BAI04802.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-07] gi|256641894|dbj|BAI07849.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-22] gi|256644949|dbj|BAI10897.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-26] gi|256648004|dbj|BAI13945.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-32] gi|256651057|dbj|BAI16991.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654048|dbj|BAI19975.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-12] Length = 169 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A+H + I +IA ISE L KI+ L + G ++T+RGR Sbjct: 13 MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFIDTLRGR 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115 GG+ L R I I DVV+ TE+ + C + +C L +C L L +AL Sbjct: 73 GGGLMLGRAPQDIRIGDVVRHTEDDMALVSCMSPSPGVPGSTECLLSRACHLRGALGEAL 132 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142 +AF VL ++ ++ ++I Sbjct: 133 DAFMAVLDSRTLADMLHTPE--RQILQ 157 >gi|329848850|ref|ZP_08263878.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] gi|328843913|gb|EGF93482.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] Length = 145 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + Y ++ L++ A QIAEA I + FL ILQ L + GI+++ RG G Sbjct: 2 LSMKAKYALKALIHMAQSTSPTLPSKQIAEAEDIPQKFLDNILQELRQNGIIDSKRGIFG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118 G L RPA I + DV++ + C + DC +C L ++R +A Sbjct: 62 GYFLARPATDIYLGDVIRVIDGPLAPIRCASLTAYQKCDDCRDETTCHLRRLMRDVRDAM 121 Query: 119 FDVLTQYSIECLVRNRSSIK 138 +L ++ LV S I+ Sbjct: 122 SAILDGRCLQDLVTAPSLIE 141 >gi|187478523|ref|YP_786547.1| hypothetical protein BAV2031 [Bordetella avium 197N] gi|115423109|emb|CAJ49640.1| conserved hypothetical protein [Bordetella avium 197N] Length = 145 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD+G+RVLMY D I +IAE IS L K++ + + G V R Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDREKAVTIPEIAERFAISRNHLVKVVHFMSQQGWVAATR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG+ L RPA + D+++ E + +C + C L G C L VL +L F Sbjct: 61 GKGGGLALARPAASYRLGDLLRVLEHQGSLVDCA---EPPCALQGVCRLAGVLNDSLRGF 117 Query: 119 FDVLTQYSIECLV 131 +D L Q+S+ LV Sbjct: 118 YDSLNQHSLAELV 130 >gi|172058089|ref|YP_001814549.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990610|gb|ACB61532.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 136 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + P + +IA+ +SE +L +++ PL G+V++VRG Sbjct: 2 MKISTKGRYGLTIMIALAKGGEAKPLSLKKIAQMYDLSEHYLEQLIAPLRNGGLVKSVRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A++IT D+++ E V E +C V + K +A Sbjct: 62 AYGGYKLGRSAEEITAGDIIRLLEGPLVVVE-----GDNCDEVTK---RKLWDKIQSAVD 113 Query: 120 DVLTQYSIECLVRN 133 VL +++ L Sbjct: 114 QVLDTTTLKDLAEE 127 >gi|319942818|ref|ZP_08017119.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319803585|gb|EFW00546.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 161 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT + + + ++ A+ +D P I+Q+AE IS +L +I L +AG+VE+ Sbjct: 1 MKLTTKGRFAVTAMVDIAMRARESDAPVPIAQVAERQKISLAYLEQIFCRLRRAGLVEST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L PA QITI +V A +E+ +C + C +C + + + Sbjct: 61 RGPAGGYKLSEPASQITIDRIVLAVDENMDTTQC--RGEGTCLGGAACLTHHLWEELNSV 118 Query: 118 FFDVLTQYSIECLV 131 L S+ECL+ Sbjct: 119 IESFLASRSLECLI 132 >gi|237737739|ref|ZP_04568220.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817] gi|229419619|gb|EEO34666.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817] Length = 140 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R YG++ L+Y A + RI +I++ IS +L +IL L I+E R Sbjct: 1 MKISTRVRYGLKALVYIADKSSENKLVRIKEISDEQGISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG RL + +IT+ + K +E V +C HK C G+C + K N Sbjct: 61 GPNGGYRLAKEPKEITLHQLYKILDEEEKVIDCNESEEHKAVCSD-GTCSGKCIWGKLDN 119 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L + +++ ++N+ I Sbjct: 120 AMTKILEETTLDEFIKNKDMI 140 >gi|86356775|ref|YP_468667.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280877|gb|ABC89940.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 148 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I V R Sbjct: 122 TRKVLFSTTIADAVGPRHG 140 >gi|270264632|ref|ZP_06192897.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041315|gb|EFA14414.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 179 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 9/134 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T +YGI L++ N ++AE +S FL KI L KAGIV G RG Sbjct: 4 ITTSVEYGIHCLLWLVGDNQRALSSRELAELQGVSPSFLAKIFPKLEKAGIVAASEGVRG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113 G RL RPAD+I+ L+++ A E + +C F + D + G C + +V+ + Sbjct: 64 GYRLARPADEISFLEIIDAIEGHKPLFDCQEVRGRCAVFDNSPPDWAVSGKCAIHAVMLQ 123 Query: 114 ALNAFFDVLTQYSI 127 A A D L ++ Sbjct: 124 AEKAMRDALAAQTL 137 >gi|240140269|ref|YP_002964747.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254562849|ref|YP_003069944.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens DM4] gi|240010244|gb|ACS41470.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens AM1] gi|254270127|emb|CAX26117.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens DM4] Length = 158 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TDY +R L+Y +H + I++IA A ISE L K++ L + G++ T RGR Sbjct: 1 MRLTRYTDYALRALIYLGLHEPQQSSIAEIARAYGISESHLTKVVHQLGRLGLIRTTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R AD+I I VV+ TE+ + ECFA C + C L L +AL AF Sbjct: 61 GGGLHLGRRADEIVIGAVVRQTEDDLALVECFAGGA--CAITAPCRLRRALGEALAAFLA 118 Query: 121 VLTQYSIECLVRNRS--SIKKIFN 142 VL Y++ L+ + + I I Sbjct: 119 VLDGYTLADLLGDEAGPEIAAILG 142 >gi|296447739|ref|ZP_06889655.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296254771|gb|EFH01882.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 147 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ + + A + +S+IA I + FL IL L G V + G+ Sbjct: 2 LTKKGKYGLKAMAHLARFAPGHCVPVSEIATTQHIPKKFLDAILCELRNCGYVASKMGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPAD+I I D+++A + C + DC V C + V+++A A Sbjct: 62 GGYTLARPADEIMIGDIIRALDGPLAPLPCASRSSYRPCDDCSDVARCAVRMVMQEAQQA 121 Query: 118 FFDVLTQYSIEC 129 VL ++ Sbjct: 122 LSKVLDNCTLAQ 133 >gi|241203623|ref|YP_002974719.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857513|gb|ACS55180.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 148 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L G+V + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPLAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I + + S Sbjct: 122 TRKVLFSTTIADAIAPKHS 140 >gi|111021140|ref|YP_704112.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820670|gb|ABG95954.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 165 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T + DY +R L+ A P++ +A++ I FL +L L + G+V + RG Sbjct: 1 MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GG L RPA+ ITI DV++ E +D C + L V Sbjct: 61 DGGYWLARPAEDITIADVIRTVEGPLASVRGERPEDVDYC--GPAAKLQDVWIAVRVNLR 118 Query: 120 DVLTQYSIECLVRNR 134 VL S+ + + Sbjct: 119 AVLENVSLADVANGQ 133 >gi|78043306|ref|YP_359262.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995421|gb|ABB14320.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 142 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK+ +Y + LM A + + +AE + E FL KI+Q LVKAG+V TV+G Sbjct: 1 MQLTKQGEYALIALMDLAKLPKGQVVPVKTLAERLMLPEAFLAKIVQSLVKAGLVYTVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GGV L + ++IT+L+VV+A E +++C +H C V C L + K Sbjct: 61 PQGGVALLKDPEKITVLEVVEAVEGPIVLSQCI-NHPDICEKVEICPLHKIWHKVQQKLI 119 Query: 120 DVLTQYSIECLVRN 133 + + +++ L + Sbjct: 120 EEFSSHNLLTLSKE 133 >gi|83310947|ref|YP_421211.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945788|dbj|BAE50652.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 149 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ +++ A H P I+ +AEA I + FL IL + G++ + +G+ Sbjct: 2 LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA++I + D+V+ + C + DC +C + +V++ +A Sbjct: 62 GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCLDEAACTVRAVMQDVRDA 121 Query: 118 FFDVLTQYSIECL 130 +L S+ + Sbjct: 122 IAAILDNTSLADM 134 >gi|284800916|ref|YP_003412781.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578] gi|284994102|ref|YP_003415870.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923] gi|284056478|gb|ADB67419.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578] gi|284059569|gb|ADB70508.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923] Length = 138 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA +E+V G Sbjct: 1 MKFSKATNYALHTIVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESVTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L PA I+ LDV++A E C K C + V+ KA Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118 Query: 120 DVLTQYSIECLV 131 D L++ ++ +V Sbjct: 119 DYLSKQTVGSIV 130 >gi|139438731|ref|ZP_01772215.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC 25986] gi|133775811|gb|EBA39631.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC 25986] Length = 189 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L A + + AE + F I LV+AGIVE++RG Sbjct: 29 MDISRKTDYALRMLAMLAEDPECLLSVRTAAEEVNVPYSFARSIQHGLVQAGIVESLRGV 88 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL D +TI VV+A + + +C A DC +G+C + A D Sbjct: 89 HGGMRLKVSPDDVTIRQVVEAVQGPMVMNDCTAPDG-DCARMGACCYHPLWAGAQALMRD 147 Query: 121 VLTQYSIECLVRNRS 135 L S+ +V +R Sbjct: 148 YLDSVSLGDIVAHRQ 162 >gi|139439175|ref|ZP_01772627.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC 25986] gi|133775522|gb|EBA39342.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC 25986] Length = 143 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++Y A D ++I ++A+ IS+ +L ++++PL+KAG++ +VR Sbjct: 1 MLISSKGRYALRLMIYIAALGDAEDKIALREVADREHISQKYLEQLVRPLMKAGLLRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG + + ++ D+++A E S C C C R + Sbjct: 61 GKGGGYMMAKDPAEVRAGDILRAVEGSTAPVAC-DGIDNSCTRSDLCSTVKFWRGLDDVI 119 Query: 119 FDVLTQYSIECLVR 132 + ++ L Sbjct: 120 EKYVDGVTLADLAA 133 >gi|226363500|ref|YP_002781282.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226241989|dbj|BAH52337.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 165 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T + DY +R L+ A P++ +A++ I FL +L L + G+V + RG Sbjct: 1 MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GG L RPA+ ITI DV++ E +D C + L V Sbjct: 61 DGGYWLARPAEDITIADVIRTVEGPLASVRGERPEDVDYC--GPAAKLQDVWIAVRVNLR 118 Query: 120 DVLTQYSIECLVRNR 134 VL S+ + + Sbjct: 119 AVLENVSLADVANGQ 133 >gi|310643521|ref|YP_003948279.1| hth-type transcriptional regulator cymr [Paenibacillus polymyxa SC2] gi|309248471|gb|ADO58038.1| HTH-type transcriptional regulator cymR [Paenibacillus polymyxa SC2] Length = 139 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +T D+++ E + + + ++ Sbjct: 61 AYGGYILANEPSGVTAGDIIRVLEGPISPVDFTEEDDP--------AKRQLWLRIRDSIA 112 Query: 120 DVLTQYSIECLV 131 +VL +++ L+ Sbjct: 113 EVLDSTTLKDLI 124 >gi|190890831|ref|YP_001977373.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190696110|gb|ACE90195.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 148 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLV 131 VL +I V Sbjct: 122 TRKVLFSTTIADAV 135 >gi|212638580|ref|YP_002315100.1| putative transcriptional regulator YrzC [Anoxybacillus flavithermus WK1] gi|212560060|gb|ACJ33115.1| Putative transcriptional regulator YrzC [Anoxybacillus flavithermus WK1] Length = 150 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + YG+ +++ A + + P + IA+ +SE +L +++ PL AG+V++VRG Sbjct: 14 KISTKGRYGLTIMIELAKRYGEGPISLKSIAQTNNLSEHYLEQLISPLRNAGLVKSVRGA 73 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +IT DV++ E V E + + + +A + Sbjct: 74 YGGYILADEPSKITAGDVIRVLEGPLQVVEELEDEEP--------AKRELWMRIRDAVKE 125 Query: 121 VLTQYSIECLVRN 133 VL ++E L + Sbjct: 126 VLDSTTLEDLASH 138 >gi|83592507|ref|YP_426259.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575421|gb|ABC21972.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 148 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ L+Y A H D P I++IAE+ IS+ FL IL L AG+V + +GR Sbjct: 2 LSNKAKYGLKALLYLAEHGDGTPILIAEIAESEDISKKFLDAILLELRNAGLVGSKKGRG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +P DQI I V++ + C + DC V C + ++ +A Sbjct: 62 GGYFLAKPTDQIFIGTVIRVLDGPIAPIPCASRTAYRPCDDCGSVQECAIRGLMLDVRDA 121 Query: 118 FFDVLTQYSIECL 130 +L ++ L Sbjct: 122 MAAILDSTTLAAL 134 >gi|315499746|ref|YP_004088549.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis excentricus CB 48] gi|315417758|gb|ADU14398.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis excentricus CB 48] Length = 172 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 18/156 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A++ P +S+I+E IS +L ++ L KAG+V++ RG Sbjct: 1 MRLSTKGRYAVMAMTDLALNAQGKPISLSEISERQQISLSYLEQLFARLRKAGLVKSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------------FASHKIDC-PLV 102 GG L R AD + + ++V A +E C A+ +I C P Sbjct: 61 PGGGYTLARTADALFVSEIVLAVDEPIKATRCALTSNKLGANKRLSKESAAREIGCMPGG 120 Query: 103 GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 C ++ A D L+ S+ +V R+ + Sbjct: 121 QRCLTHNLWEDLGFAIHDYLSTVSLNDVVHKRTRKR 156 >gi|299535694|ref|ZP_07049015.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728894|gb|EFI69448.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 139 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P +I+ V+ E E + + + + +A Sbjct: 61 AYGGYMLANPPSEISAAHVISVLEGPIQPVEGIENEEAP--------QRELWLRIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 +VL +IE L + Sbjct: 113 NVLDTTTIEDLAQ 125 >gi|229816044|ref|ZP_04446365.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM 13280] gi|229808358|gb|EEP44139.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM 13280] Length = 169 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L A N + AEA + F I LV+AGIVE++RG Sbjct: 10 MDISRKTDYALRMLAMLAEGNKSLLSVRTAAEAVDVPYSFARSIQHGLVQAGIVESLRGV 69 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL +ITI +V+A + + +C A + CP + C + A D Sbjct: 70 RGGMRLRLKPSEITIRQIVEAVQGPLVMNDCTAEEGM-CPRMECCCYHPIWAGAQELLRD 128 Query: 121 VLTQYSIECLVRNRS 135 L +++ +V +R Sbjct: 129 YLDSVTLDDVVNHRQ 143 >gi|46578685|ref|YP_009493.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603749|ref|YP_968149.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46448097|gb|AAS94752.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563978|gb|ABM29722.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] gi|311232556|gb|ADP85410.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 165 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG R+L+ A+H + P + +A IS+ +L K+ +PL +AG++ + RG Sbjct: 1 MRILTNSRYGTRMLLDIALHQRERPVLMKDVAARLSISQKYLEKLSRPLKEAGLLVSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA +IT+ DVV+ E + C + C C + ++ +A F Sbjct: 61 PTGGHMLGRPAVEITVGDVVRVMEGGDELVGC-GRDEAACSHAPGCLTRMIWKECSHAMF 119 Query: 120 DVLTQYSIECLVR 132 L + + L+R Sbjct: 120 ARLDAITFDELLR 132 >gi|238757525|ref|ZP_04618710.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC 35236] gi|238704287|gb|EEP96819.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC 35236] Length = 125 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ ISQ+ + +S + KI+ L + G+V VRG+ GG+RL +PA QI I D Sbjct: 3 SLPEGQMTSISQVTDVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPAAQIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L VL +A+ +F + L Y++ +V++ S + Sbjct: 63 VVRELE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVKDNSPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|85713395|ref|ZP_01044399.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] gi|85692781|gb|EAQ30775.1| Predicted transcriptional regulator, YjeB/RRF2 family protein [Idiomarina baltica OS145] Length = 150 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 4/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K TDYG+RVL+Y A D I+ ++ +S+ L K++ L K G+++T RG Sbjct: 1 MQLKKYTDYGLRVLIYLAAAEPDERATINDLSSVFSVSKNHLNKVVHHLGKLGLIKTWRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG L A + V++ E +C C + C L ++ F+ Sbjct: 61 KGGGFSLAVDARHTRLDTVIRQLEGDEDWIDCL---NPTCKIYSVCDLKGIIHAGKEQFY 117 Query: 120 DVLTQYSIECLVRNRSSIK 138 L +Y+I LV IK Sbjct: 118 SYLAKYTIASLVERPEEIK 136 >gi|254468307|ref|ZP_05081713.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium KB13] gi|207087117|gb|EDZ64400.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium KB13] Length = 159 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + P + ++E IS +L ++ L K IV ++RG Sbjct: 1 MKLTTKGRFAVSAILDIALNQKNGPVTLLAVSERQGISLSYLEQLFSKLRKGEIVSSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R+ + IT+ ++ A +E +C +C C + Sbjct: 61 PGGGYRIKKAYTDITVRQIISAVDEKIDATQC--GGTENCHDGNRCMTHDLWISVNRKIL 118 Query: 120 DVLTQYSIECLVRNRS 135 L S++ L N Sbjct: 119 SYLDSLSLQDLYDNHQ 134 >gi|83310153|ref|YP_420417.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944994|dbj|BAE49858.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 149 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ +++ A H P I+ +AEA I + FL IL + G++ + +G+ Sbjct: 2 LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA++I + D+V+ + C + DCP +C + +V++ +A Sbjct: 62 GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCPDEAACTVRAVMQDVRDA 121 Query: 118 FFDVLTQYSIECL 130 + S+ + Sbjct: 122 IAAIPDNTSLADM 134 >gi|78043860|ref|YP_361240.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995975|gb|ABB14874.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT+ TDY R ++Y A +IA I FL KIL+ L +AGIV++ RG Sbjct: 5 MNLTQATDYAFRAVLYLARKGNGEVVEAQEIAGRENIPLRFLLKILRQLGQAGIVKSYRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117 GG L + ++IT+LDVV+A E + C + C G C + L N Sbjct: 65 VGGGFSLAKDPEEITLLDVVEAVEGPVKINRCLIDPQY-CTSQRGGRCAIHQELSLIQND 123 Query: 118 FFDVLTQYSIECLVRNRSSI 137 L S + ++ ++ Sbjct: 124 IIARLGTVSFKKILEREQNL 143 >gi|126653988|ref|ZP_01725823.1| YrzC [Bacillus sp. B14905] gi|169829331|ref|YP_001699489.1| putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|126589505|gb|EAZ83648.1| YrzC [Bacillus sp. B14905] gi|168993819|gb|ACA41359.1| Putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 139 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P +I+ V+ E E + + + + +A Sbjct: 61 AYGGYMLANPPSEISAAHVISVLEGPIQPVEGIENEEAP--------QRELWLRIRDAVK 112 Query: 120 DVLTQYSIECLVR 132 +VL +IE L + Sbjct: 113 NVLDTTTIEDLAQ 125 >gi|328957508|ref|YP_004374894.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] gi|328673832|gb|AEB29878.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] Length = 137 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ + R+ +A+ IS +L KIL L KAG++ + G Sbjct: 1 MKYSKATNYALHSMVHLAMESTSGAVRVEDLAKRQKISPTYLSKILTKLSKAGLIVSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R ++ T LD+++A E + C SH C + + A + Sbjct: 61 VKGGYRLLRSPEECTFLDIIQAIEGYESLLNCTMSHDGKWNR--HCLIERAVADAEDKLK 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L + +I +++ R Sbjct: 119 DELARKTIADILKQRQE 135 >gi|91215754|ref|ZP_01252724.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus torquis ATCC 700755] gi|91186220|gb|EAS72593.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus torquis ATCC 700755] Length = 171 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y I L+Y A + + P IS+IA+ I FL IL L KAG++ + +G+ Sbjct: 28 ISKKTKYAINALVYLAKRNGEGPIVISEIAQKEHIPRKFLESILLNLKKAGVLASKKGKG 87 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + I + DV++ E + C +C +CG+ ++ + N Sbjct: 88 GGYYLLQNPEDINLADVMRLVEGPIALLPCVTYKYYERCEECKDEETCGIRNIFYEVRNK 147 Query: 118 FFDVLTQYSIECLVRNRSSI 137 ++L + ++ +++ S + Sbjct: 148 TVELLKKANLAEIIKRESHL 167 >gi|108805159|ref|YP_645096.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766402|gb|ABG05284.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter xylanophilus DSM 9941] Length = 154 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ RTDY +R + A + P + I+E I + F+ IL L +AGIV Sbjct: 1 MQVSARTDYALRAVAELARAGMEGSGPVKGEWISEVQKIPKKFMENILLDLKRAGIVRAQ 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RP +I++ ++++A E + L V + Sbjct: 61 RGASGGYWLARPPGEISLAEIIRAVEGPLANVRGEWPENVAYEGAAE-HLQEVWVAVRAS 119 Query: 118 FFDVLTQYSIECLVRNR 134 VL ++E LVR Sbjct: 120 LRSVLENVTLEDLVRGE 136 >gi|120610257|ref|YP_969935.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120588721|gb|ABM32161.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli AAC00-1] Length = 167 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TDY +RVLMYCA P I+++A IS L KI+Q L G+++T R Sbjct: 1 MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL PA I + DVV+ TE F + ECF C L G C L L +A ++ Sbjct: 61 GRGGGLRLRVPAASIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSY 120 Query: 119 FDVLTQYSIECLVRNRSS 136 VL ++ LV ++ Sbjct: 121 LAVLDGVTLADLVARPAA 138 >gi|163743460|ref|ZP_02150839.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10] gi|161383290|gb|EDQ07680.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10] Length = 149 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R+L+ A D I ++ + + KI+ LV+ G V ++RGR Sbjct: 1 MKLNLKTDYALRLLILLATRPDQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV++ R +I + D+V A E + +C + C LVG+C L VL +A AF + Sbjct: 61 SGGVQIGREPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115 Query: 121 VLTQYSIECLVRNRSSI 137 VL Y + L+ + + Sbjct: 116 VLMAYRLSDLIEAPAPV 132 >gi|308070333|ref|YP_003871938.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305859612|gb|ADM71400.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 139 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +T D+++ E + + + ++ Sbjct: 61 AYGGYILANEPAGVTAGDIIRVLEGPISPVDFTEEDDP--------AKRQLWLRIRDSIA 112 Query: 120 DVLTQYSIECLV 131 +VL +++ L+ Sbjct: 113 EVLDSTTLKDLI 124 >gi|46580373|ref|YP_011181.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449790|gb|AAS96440.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311233650|gb|ADP86504.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 170 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +T Y R+L+ A+H + P + ++E ++ F+ +IL+ L + G+ + RG Sbjct: 1 MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R D I++ D+V+ E + C C C S KA A Sbjct: 61 AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 120 Query: 120 DVLTQYSIECLVRNR 134 L + S+ L+ Sbjct: 121 AALDETSLTALMSGE 135 >gi|323494810|ref|ZP_08099908.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546] gi|323310950|gb|EGA64116.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546] Length = 158 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL Sbjct: 1 MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGED 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A I I V+ A +ES +C + K DC C ++ R + D L ++ Sbjct: 61 AYSIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGE 118 Query: 130 LVRNRSSIK 138 L+++ ++ Sbjct: 119 LMKDNEVLE 127 >gi|298207782|ref|YP_003715961.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter atlanticus HTCC2559] gi|83850420|gb|EAP88288.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter atlanticus HTCC2559] Length = 136 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L + A + P +I+ I+EA IS+ FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALTHLARQENQAPVQIATISEAENISQKFLESILLTLKKNGILSSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + A I++++V++ E + C + DCP +C + ++ + ++ Sbjct: 62 GGYYLLKEAKDISMVNVMRVLEGPIAMVPCVSLNYYEKCDDCPDEHACSVHKLMIEVRDS 121 Query: 118 FFDVLTQYSIECLV 131 D+ S+ L+ Sbjct: 122 TLDIFNNKSLADLI 135 >gi|162454034|ref|YP_001616401.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56'] gi|161164616|emb|CAN95921.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56'] Length = 232 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 5/138 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+R L A HND P +I +I+E I FL +I Q L KAG++ + RG Sbjct: 83 KLSNKGRYGVRALFDIAFHNDGRPTQIREISERELIPARFLEQIFQDLKKAGLISSKRGP 142 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 RGG L RPA +I++ DVV+A E V + + PL T+V A Sbjct: 143 RGGYHLARPASEISLGDVVRALEGPVAVIAPDDDGRPEGSPLDPP---TAVFHDLALAIE 199 Query: 120 DVLTQYSIECLVRNRSSI 137 SI + + Sbjct: 200 RCFDSVSIADVCERGVEL 217 >gi|306838497|ref|ZP_07471336.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] gi|306406418|gb|EFM62658.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF 2653] Length = 199 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 58 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 117 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA++I I ++++A + + C + C C + V+ A Sbjct: 118 GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 177 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 178 ANVLDHRTLAD 188 >gi|56421100|ref|YP_148418.1| hypothetical protein GK2565 [Geobacillus kaustophilus HTA426] gi|261418418|ref|YP_003252100.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC61] gi|297529270|ref|YP_003670545.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. C56-T3] gi|319767622|ref|YP_004133123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y412MC52] gi|56380942|dbj|BAD76850.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374875|gb|ACX77618.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC61] gi|297252522|gb|ADI25968.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. C56-T3] gi|317112488|gb|ADU94980.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y412MC52] Length = 138 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT D+++ E E + + + +A Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLEGPLTPVEELEEEEP--------AKRELWIRIRDAVE 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E L + Sbjct: 113 EVLDSTTLEDLAK 125 >gi|302560986|ref|ZP_07313328.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] gi|302478604|gb|EFL41697.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] Length = 160 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ D ++AEA + K++ L G++ RGR Sbjct: 13 MRLLRSTDLALRVLMRLAVAGDSSPTTREVAEAMDVPYTHAAKVVAELQHMGLLTARRGR 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L ++ +V++ E V +C + CPL +C L LR+A AFF Sbjct: 73 GGGLSLTEDGRAASVGALVRSFEGDGDVVDCEGTATSPACPLSSACRLRGALRRAQEAFF 132 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ +V + + Sbjct: 133 ATLDPVTVADIVTDPTG 149 >gi|303238934|ref|ZP_07325465.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] gi|302593567|gb|EFL63284.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio cellulolyticus CD2] Length = 149 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A+H + IAE IS +L ++ L K+G+V++V+G Sbjct: 1 MKFSTKGRYGLRAMVDLAVHAKGEHVALCSIAERQGISMNYLEQVFSVLRKSGLVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118 +GG L I + +++ E V + A + + + SC V K + Sbjct: 61 AQGGYILSESPADIKVGRILRVLEGPLSVIDEDAENSTENESRIQSCIRMCVWDKMNESL 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 D+ ++E LV N + I Sbjct: 121 NDLADSLTLEDLVDNYWKMNGI 142 >gi|302340142|ref|YP_003805348.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta smaragdinae DSM 11293] gi|301637327|gb|ADK82754.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta smaragdinae DSM 11293] Length = 138 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + Y IR ++ A + P I +A IS FL +I L K+GI+ + RG Sbjct: 1 MRITTKGRYAIRAVLRLAQAEEHRPIPIRILAAQEGISPEFLEQIFFRLRKSGIINSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + A+ +T++++ A EE FF++ C + C C + + Sbjct: 61 PGGGFRLMKEANDLTLMEIFDAVEEGFFLSPCTQDGE-QCDREERCLVHGLWEHTYEMLQ 119 Query: 120 DVLTQYSIECLVRNR 134 +I ++ NR Sbjct: 120 SYFGAITIADVMANR 134 >gi|269137717|ref|YP_003294417.1| putative transcriptional regulator [Edwardsiella tarda EIB202] gi|267983377|gb|ACY83206.1| putative transcriptional regulator [Edwardsiella tarda EIB202] gi|304557773|gb|ADM40437.1| Nitrite-sensitive transcriptional repressor NsrR [Edwardsiella tarda FL6-60] Length = 124 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ I+Q+ E +S + KI+ L +AG V VRG+ GG+RL RPA +I I D Sbjct: 3 ALPEGQMTSITQVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L VL +A +AF L Q ++ L+ + + Sbjct: 63 VVRELE-PLTLVNCSQAF---CHITPACRLKQVLHRATDAFLAELDQCTLADLIEHNPPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|283850155|ref|ZP_06367444.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] gi|283574181|gb|EFC22152.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp. FW1012B] Length = 145 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +Y IR +++ ++H D P +IAEA I FL K+ Q L +AGI+ +G Sbjct: 1 MRLTRAGEYAIRCVLHLSMHRDRPVITRKEIAEAMDIPAQFLGKVAQHLARAGIIAIRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+L +V+A + F+ +C + + C C + V KA + Sbjct: 61 AQGGYELVRRPEDITLLSLVEAIDGEIFLNDCISRPE-SCDRRKLCSVHRVWDKARSQLR 119 Query: 120 DVLTQYSIECLVRNRSS 136 + L ++ L S Sbjct: 120 ETLGSTTLAALAETESK 136 >gi|206901224|ref|YP_002251262.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] gi|206740327|gb|ACI19385.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12] Length = 144 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + +YG+R ++Y + +SQI++ IS FL +++ L +A ++E+ +G Sbjct: 3 RVSAKLEYGLRAMIYLGENYPHEKVTLSQISQKENISREFLAQLMSDLRRANLIESYKGI 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +P +IT+ ++ +A E + +C C +C SV R D Sbjct: 63 TGGYTLTKPPKEITLKEIFEALEGPIQIIDCIHLEN-KCERENTCYSKSVWRFIEKKIID 121 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 +L + ++E L+ +++ Sbjct: 122 LLGKLTLEDLINGTIRKEEVLT 143 >gi|254515045|ref|ZP_05127106.1| Rrf2 family protein [gamma proteobacterium NOR5-3] gi|219677288|gb|EED33653.1| Rrf2 family protein [gamma proteobacterium NOR5-3] Length = 137 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 73/131 (55%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+LM+CAIH RI +A A IS+ L K + L + G + T RGR GG++L Sbjct: 1 MRILMHCAIHPGRIVRIQDVATAFGISKAHLLKSARHLGQLGYLSTSRGRNGGIQLGMAP 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 ++I + V++ E+S ECF SH CP+VG C LT + RK L AF+ L S+ + Sbjct: 61 ERIFVGKVIRELEDSGDFVECFNSHTNTCPIVGPCKLTGLFRKGLEAFYKELDDVSLADI 120 Query: 131 VRNRSSIKKIF 141 V + +++ Sbjct: 121 VGDGRALRDRL 131 >gi|300023866|ref|YP_003756477.1| Rrf2 family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525687|gb|ADJ24156.1| transcriptional regulator, Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 523 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + + A H D +S +AE + +L ++ PL ++G+VE+ RG Sbjct: 1 MELTTKGRYAVMAMADLAAHADRTAVPLSSVAERQHLPLSYLEQLFVPLRRSGLVESARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL + ++I+I V+ A EE C + C + C + A Sbjct: 61 RAGGYRLSKKPEEISIAAVMAAVEEVTHFTRC-TDNDPRCSVGTPCLTHGLWSALSRATS 119 Query: 120 DVLTQYSIECLV 131 + L S+ ++ Sbjct: 120 EFLESVSLADVL 131 >gi|125974347|ref|YP_001038257.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|281418894|ref|ZP_06249912.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|125714572|gb|ABN53064.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] gi|281407351|gb|EFB37611.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] Length = 149 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A++ N ++ IAE IS +L ++ L K+G+V++ +G Sbjct: 1 MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 +GG L I + +++A E V + + C +V K + Sbjct: 61 AQGGYMLSEVPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 +++ ++E L + I Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142 >gi|196250088|ref|ZP_03148782.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] gi|196210272|gb|EDY05037.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. G11MC16] Length = 138 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA A +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT D+++ E E + + + +A Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLEGPITPVEELEEEEP--------AKRELWIRIRDAVE 112 Query: 120 DVLTQYSIECLVR 132 +VL ++E L + Sbjct: 113 EVLDSTTLEDLAK 125 >gi|302550950|ref|ZP_07303292.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302468568|gb|EFL31661.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 152 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ + +AE + L K++ L G++ RGR Sbjct: 9 MRLLRSTDLALRVLMRLAVAGESSPTTRDVAEGMDVPYTHLAKVVAELQHMGLLTARRGR 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ VV+A E V +C CPL +C L LR+A AFF Sbjct: 69 GGGLSLTERGRSASVGAVVRAFEGDGDVVDC--EGPTPCPLNSACRLRVALRRAQEAFFA 126 Query: 121 VLTQYSIECLVRNRSS 136 L ++ +V + Sbjct: 127 SLDPITVADIVAEPTG 142 >gi|325263740|ref|ZP_08130473.1| Rrf2 family protein [Clostridium sp. D5] gi|324030778|gb|EGB92060.1| Rrf2 family protein [Clostridium sp. D5] Length = 146 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A + + P + Q A+ IS +L ++ L KAGIV +V+G Sbjct: 1 MKVSTKGRYGLRALVDMAANSQEGPISLIQTAKRQNISLNYLEQVFGVLRKAGIVVSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R AD IT+ ++++A E F + + + D L V + N Sbjct: 61 AGGGYKLARSADSITVKEILEALEGEFSIIDKNGEEEADPVQKAIQEL--VWDEIDNKVN 118 Query: 120 DVLTQYSIECLVRNRSS 136 + L + ++ LVR Sbjct: 119 EFLGKRTLAQLVREYRE 135 >gi|219667205|ref|YP_002457640.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|219537465|gb|ACL19204.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 147 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A+H+ +S IAE ISE +L ++ L KAGI+ +V+G Sbjct: 1 MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L A +I + +++ E VA + + C V + Sbjct: 61 AQGGYVLADKAAEIKVGTILRVLEGELSVAN-EELPQEGGVSIQECIQVKVWDQMTERIN 119 Query: 120 DVLTQYSIECLVRNRSSI 137 +++ ++E LV + + Sbjct: 120 ELVDSLTLEDLVHEYNVM 137 >gi|124268159|ref|YP_001022163.1| BadM/Rrf2 family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260934|gb|ABM95928.1| transcriptional regulator, BadM/Rrf2 family [Methylibium petroleiphilum PM1] Length = 184 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HLT +YG+ L++ + +AE IS F+ KI L KAGIV G R Sbjct: 3 HLTSSVEYGLHCLLWLVDAGETQPSSRDLAELQGISPSFVAKIFPKLEKAGIVAASAGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RPA++IT+LDVV A E + +C F G C + +V+ Sbjct: 63 GGYRLARPAERITVLDVVDAIEGDKPLFDCQEIRGRCAVFEGEAPRWATGGVCAIHAVML 122 Query: 113 KALNAFFDVLTQYSIECLV 131 +A + D L Q ++ L Sbjct: 123 RAEKSMRDALAQETLAGLA 141 >gi|27364702|ref|NP_760230.1| transcriptional repressor NsrR [Vibrio vulnificus CMCP6] gi|37681247|ref|NP_935856.1| transcriptional repressor NsrR [Vibrio vulnificus YJ016] gi|320155095|ref|YP_004187474.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus MO6-24/O] gi|81448739|sp|Q8DCU1|NSRR_VIBVU RecName: Full=HTH-type transcriptional repressor nsrR gi|81859821|sp|Q7MH10|NSRR_VIBVY RecName: Full=HTH-type transcriptional repressor nsrR gi|27360847|gb|AAO09757.1| Nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus CMCP6] gi|37199998|dbj|BAC95827.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] gi|319930407|gb|ADV85271.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus MO6-24/O] Length = 141 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TDY +R L+Y A D I+ + E +S + K++ L + ++TVRG Sbjct: 1 MQLTSFTDYALRTLIYLASLPDNEQTNITDVTELFGVSRNHMVKVINRLGQLNYIQTVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+RL RPA I + +VV+ E + C C + +C L L +A AF Sbjct: 61 KNGGIRLNRPAKTILVGEVVRDLE-PLDLVNCSVEF---CHITPACRLKERLYRAKLAFL 116 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 L SI L+ + + + + Sbjct: 117 AELDDCSIAELLDDNAELLILLQ 139 >gi|172057146|ref|YP_001813606.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989667|gb|ACB60589.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 146 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IR L++ + D RI ++A+ IS+ L K++ L + G++ +VRGR Sbjct: 1 MRMTRYTDYAIRSLLFAGANADRLVRIQEVADCYDISKNHLMKVVYRLGQNGLIHSVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL P D+I I DVV+ E + + L + A+ AF Sbjct: 61 GGGFRLASPPDEIYIGDVVQLFEPTTHFLDPLEGTSELPSLDPA---RDAFDDAIAAFHQ 117 Query: 121 VLTQYSIECLVRN-RSSIKKIFN 142 VL Y+I L+ S+ ++I Sbjct: 118 VLNSYTINDLLHPTNSTHRQILE 140 >gi|330821657|ref|YP_004350519.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373652|gb|AEA65007.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] Length = 177 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 11/143 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 H++ +YG+ L+Y A + +AE + FL K+ L KAG+V G Sbjct: 3 HISTGVEYGLHCLLYLAEPASGMREASVRDLAELQGVPLDFLAKLFTKLHKAGLVIATEG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110 +GG L RPADQI++LDVV A + + EC F K G C + SV Sbjct: 63 AKGGFALARPADQISVLDVVSAIDGDKSLFECREVRERCAVFEGTKPAWATSGVCAIHSV 122 Query: 111 LRKALNAFFDVLTQYSIECLVRN 133 +++A + L S+ + Sbjct: 123 MQQAEKKMRESLASQSLADIAER 145 >gi|297584735|ref|YP_003700515.1| BadM/Rrf2 family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143192|gb|ADH99949.1| transcriptional regulator, BadM/Rrf2 family [Bacillus selenitireducens MLS10] Length = 139 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 11/134 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ ++M A + + P + IA +SE +L +++ PL A +V++VRG Sbjct: 1 MKISTKGRYGLTIMMALARKYGEGPVSLKSIAHEHALSEHYLEQLIAPLRNAALVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR-KALNAF 118 GG L + + IT DV++ E E + LR K +A Sbjct: 61 AYGGYMLAKEPESITAGDVIRVLEGPITPVEIIDDEEPA---------KRDLRIKIRDAV 111 Query: 119 FDVLTQYSIECLVR 132 DVL ++E L Sbjct: 112 KDVLDSTTLEDLAN 125 >gi|326797990|ref|YP_004315809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sphingobacterium sp. 21] gi|326548754|gb|ADZ77139.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp. 21] Length = 145 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K++ Y I+ L+ + P +I +IAE I + FL +IL + AGI+ + +G Sbjct: 2 LSKKSKYAIKALIVLGKNYGKEPMQILKIAEEENIPKKFLEQILLEMRNAGILYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + I + V++ T+ + C F +C +CG+ NA Sbjct: 62 GGYSLNKDPEDIRLSQVIRLTDGPIALLPCVSLNFYRRCDECKTEETCGIRDTFVDVRNA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L SI +++ ++ Sbjct: 122 MLQILNDTSIADIIKREENL 141 >gi|219871543|ref|YP_002475918.1| transcriptional regulator [Haemophilus parasuis SH0165] gi|219691747|gb|ACL32970.1| transcriptional regulator [Haemophilus parasuis SH0165] Length = 147 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TDY RVLMY A H D I Q+AE+ +S+ L K++ + K G + T RG+ Sbjct: 1 MHLSKFTDYAFRVLMYLAHHQDELRTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ + + +V++ + + + +C + C L C L SVL AL F+ Sbjct: 61 GGGIRISSLILSMPVGEVIRTLQGNPRLIDC---NSPACILKPHCHLKSVLDHALEHFYQ 117 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L QYSI + ++ IK I Sbjct: 118 YLNQYSISECIGSQKLIKGIL 138 >gi|89896939|ref|YP_520426.1| hypothetical protein DSY4193 [Desulfitobacterium hafniense Y51] gi|89336387|dbj|BAE85982.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 147 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A+H+ +S IAE ISE +L ++ L KAGI+ +V+G Sbjct: 1 MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L A +I + +++ E VA + + C V + Sbjct: 61 AQGGYVLADRAAEIKVGTILRVLEGDLSVAN-EELPQEGGVSIQECIQVKVWDQMTERIN 119 Query: 120 DVLTQYSIECLVRNRSSI 137 +++ ++E LV + + Sbjct: 120 ELVDSLTLEDLVHEYNVM 137 >gi|313898097|ref|ZP_07831636.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] gi|312957125|gb|EFR38754.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] Length = 137 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y + ++ A N I IA+A S +L +I + L KA ++ ++RG+ Sbjct: 1 MKISTKGIYALEAMIELASRNTACVSIRDIADARNCSVKYLEQIFKQLKKAQLLISIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG ++ + ++IT D++ A EE C + C G C V + Sbjct: 61 DGGYQIAKDPEEITAKDIILAVEEKLDPVVCLS---HTCTRSGICRTQPVWMGMQEQIYK 117 Query: 121 VLTQYSIE---CLVRNR 134 VL +++ + RN Sbjct: 118 VLESKTLKYLTDIYRNE 134 >gi|299537268|ref|ZP_07050571.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1] gi|298727509|gb|EFI68081.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1] Length = 166 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + + I ++E +SE +L K+L L K GIV +V G Sbjct: 1 MKYSVMVEYALHSLVYLIDVPKNESIGIKDLSEFQGLSETYLSKVLGKLSKEGIVSSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108 +GG RL R + IT DVV+A E + +C C +C + Sbjct: 61 VKGGYRLNRKPEDITFWDVVRAVEGEEPIFQCKNIKANFAYLNKKQKCESCSSQSNCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 SV+ +A + L +I L Sbjct: 121 SVMLEAEEHMRNYLRSKTIAWL 142 >gi|197118861|ref|YP_002139288.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088221|gb|ACH39492.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 153 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 5/142 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A + + FL IL L GI+++ +G+ Sbjct: 2 ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L R +IT ++ E C + +C +CG+ V++ +A Sbjct: 62 GGYFLGRHPGKITFGQAIRVMEGPLAPVPCVSETAYAKCTECENELTCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 +L ++ ++ + ++ Sbjct: 122 MAVILDGTTLADVLEKIDTAEQ 143 >gi|38637899|ref|NP_942873.1| hypothetical protein PHG235 [Ralstonia eutropha H16] gi|32527237|gb|AAP85987.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 148 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R+L+Y A H + +IA+A IS L K+ L + G + TVRGR Sbjct: 1 MRLTTMTDYALRLLIYVARHPERMCTNDEIAQAYGISRAHLVKVTHKLSRQGWIATVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L I + DVV++ E F + A L V+ A +F Sbjct: 61 GGGMQLSSGPGSINLGDVVRSVEPDFDLVAGLADGSAR-KFASDEHLCRVMDGARWSFLQ 119 Query: 121 VLTQYSIECLV 131 L +++ L+ Sbjct: 120 YLESFTLADLL 130 >gi|119386877|ref|YP_917932.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377472|gb|ABL72236.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 182 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L+Y A H D I A A IS L K+ L +AG + +VRGR Sbjct: 48 MRLTSFSDYALRLLIYAARHPDRLVTIEGAALAYDISRSHLTKVANVLTRAGFLNSVRGR 107 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R + + +V++ TE AECF +I P L + +R AL AF Sbjct: 108 SGGLELGRDPAALRLGEVLRVTEPDMAAAECFGPEEIRDPNRPG-ALDAAIRDALAAFLQ 166 Query: 121 VLTQYSIECLVRNRSS 136 V+ + ++ L+ + Sbjct: 167 VMDRRTLADLLADEQE 182 >gi|319652366|ref|ZP_08006482.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317395828|gb|EFV76550.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 164 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 12/150 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y H D I +++ +SE +L KI L K GIV +V G Sbjct: 1 MQYSIGVEYALHCLVYLIDHTEDSSIGIKELSTFQGVSETYLSKIFSKLSKNGIVSSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVG-SCGLTSVL 111 +GG +L + ++I+ DV++A E + +C + C SC + V+ Sbjct: 61 VKGGYKLAKSPEEISFWDVIEAVEGPKPIFQCKNIKDNGYLYRDNTCSSAPSSCTINLVM 120 Query: 112 RKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 A D L ++ L + ++ Sbjct: 121 LSAEEKMRDFLRSKTLSWL---NEELDRVL 147 >gi|90579379|ref|ZP_01235189.1| hypothetical transcriptional regulator [Vibrio angustum S14] gi|90440212|gb|EAS65393.1| hypothetical transcriptional regulator [Vibrio angustum S14] Length = 158 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A +ES +C K DC C ++ L ++ L++ Sbjct: 61 IAVGMVIAAVDESVDATKCHG--KGDCQGGARCLTHTLWHDLSERISGFLNNITLGELMK 118 Query: 133 NRS 135 + Sbjct: 119 DND 121 >gi|196037505|ref|ZP_03104816.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196044146|ref|ZP_03111382.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|225862920|ref|YP_002748298.1| hypothetical protein BCA_1009 [Bacillus cereus 03BB102] gi|229183282|ref|ZP_04310512.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] gi|196024785|gb|EDX63456.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196031747|gb|EDX70343.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|225789674|gb|ACO29891.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|228600421|gb|EEK58011.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] Length = 168 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|118476599|ref|YP_893750.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118415824|gb|ABK84243.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] Length = 170 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G Sbjct: 3 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 63 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 122 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 123 LVMLEAEEHMREFLRKKTLAWL 144 >gi|30261095|ref|NP_843472.1| hypothetical protein BA_0967 [Bacillus anthracis str. Ames] gi|47526250|ref|YP_017599.1| hypothetical protein GBAA_0967 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183932|ref|YP_027184.1| hypothetical protein BAS0909 [Bacillus anthracis str. Sterne] gi|165871693|ref|ZP_02216338.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167635503|ref|ZP_02393816.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167638963|ref|ZP_02397237.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170687574|ref|ZP_02878790.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170707938|ref|ZP_02898387.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177653587|ref|ZP_02935761.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190566555|ref|ZP_03019472.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227816175|ref|YP_002816184.1| hypothetical protein BAMEG_3602 [Bacillus anthracis str. CDC 684] gi|229601398|ref|YP_002865526.1| hypothetical protein BAA_1065 [Bacillus anthracis str. A0248] gi|254682847|ref|ZP_05146708.1| hypothetical protein BantC_03205 [Bacillus anthracis str. CNEVA-9066] gi|254725633|ref|ZP_05187415.1| hypothetical protein BantA1_24776 [Bacillus anthracis str. A1055] gi|254734259|ref|ZP_05191972.1| hypothetical protein BantWNA_03713 [Bacillus anthracis str. Western North America USA6153] gi|254740092|ref|ZP_05197784.1| hypothetical protein BantKB_03564 [Bacillus anthracis str. Kruger B] gi|254753432|ref|ZP_05205468.1| hypothetical protein BantV_13223 [Bacillus anthracis str. Vollum] gi|254758530|ref|ZP_05210557.1| hypothetical protein BantA9_09484 [Bacillus anthracis str. Australia 94] gi|30254709|gb|AAP24958.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47501398|gb|AAT30074.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177859|gb|AAT53235.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164712594|gb|EDR18126.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167513093|gb|EDR88465.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167529121|gb|EDR91875.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170127098|gb|EDS95976.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170668387|gb|EDT19134.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172081391|gb|EDT66465.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190562107|gb|EDV16075.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227003551|gb|ACP13294.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229265806|gb|ACQ47443.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 168 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|65318375|ref|ZP_00391334.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] Length = 168 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|95930591|ref|ZP_01313326.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] gi|95133426|gb|EAT15090.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas acetoxidans DSM 684] Length = 151 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ T+Y IR ++Y + I + ++ FL KI QP+VKAGIV + RG Sbjct: 1 MVITRATEYAIRAILYMSKFPPGEIVLKKDICQTQNVTPAFLTKIFQPMVKAGIVGSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + IT+ DV KA E+ + +C C C + ++ + Sbjct: 61 VGGGFYLRHKPEDITVYDVFKAQEDPLHINKCLGDENC-CERDNYCPVHGAWKEVRESMI 119 Query: 120 DVLTQYSIECLVRNRSS-IKKIF 141 L++Y+ L + +KK+ Sbjct: 120 QQLSEYNFARLAEEEEANLKKLM 142 >gi|138896135|ref|YP_001126588.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2] gi|134267648|gb|ABO67843.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2] Length = 139 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + D P + IA A +SE +L +++ PL AG+V+++RG Sbjct: 2 MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +IT D+++ E E + + + +A Sbjct: 62 AYGGYVLAEHPAKITAGDILRVLEGPITPVEELEEEEP--------AKRELWIRIRDAVE 113 Query: 120 DVLTQYSIECLVR 132 +VL ++E L + Sbjct: 114 EVLDSTTLEDLAK 126 >gi|297588298|ref|ZP_06946941.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573671|gb|EFH92392.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 135 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ ++++ EE F V EC A + C +C + + + Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSAVPGL-CSREDTCPSRLIWTQMHDDMI 119 Query: 120 DVLTQYSIECLVRNRS 135 + + S++ L+ Sbjct: 120 NSIKNVSLQDLISKEK 135 >gi|134300796|ref|YP_001114292.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053496|gb|ABO51467.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum reducens MI-1] Length = 137 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R ++Y + IAE I FL KIL+ L AGI+E+ RG Sbjct: 1 MKLNQATDYAFRAVLYLSRLPKGQVSEAKAIAEQENIPIRFLLKILRSLTAAGIIESYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R IT+LDVV+A E V C A + C + L Sbjct: 61 VSGGYALAREPKDITMLDVVEAVEGPVEVNRCLIAPESCNKNHTARCPMHRALYAIQQNL 120 Query: 119 FDVLTQYSIECL 130 L Y+ L Sbjct: 121 NQQLNSYNFADL 132 >gi|167856368|ref|ZP_02479095.1| sec-independent translocase [Haemophilus parasuis 29755] gi|167852506|gb|EDS23793.1| sec-independent translocase [Haemophilus parasuis 29755] Length = 147 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TDY RVLMY A H D + I Q+AE+ +S+ L K++ + K G + T RG+ Sbjct: 1 MHLSKFTDYAFRVLMYLAHHQDEVHTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+R+ + + +V++ + + + +C + C L C L SVL AL F+ Sbjct: 61 GGGIRISSLILSMAVGEVIRTLQGNPRLIDC---NSPACILKPHCHLKSVLDHALEHFYQ 117 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L QYS+ + ++ IK I Sbjct: 118 YLNQYSVSECIGSQKVIKGIL 138 >gi|197105185|ref|YP_002130562.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196478605|gb|ACG78133.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 144 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + Y + + A ++ IA IS +L ++ L + G+V++ Sbjct: 1 MRLSTKGRYAVMAMADLARREGEAARAVALADIAARQEISLSYLEQLFARLRRKGLVKSA 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG RL R A+Q +I ++V A +E C + K C + Sbjct: 61 RGPGGGYRLARTAEQTSIAEIVHAVDEPLRATRCANAGKGCMTRGERCLTHDLWADLGQQ 120 Query: 118 FFDVLTQYSIECLVRNR 134 L ++ ++ R Sbjct: 121 IEHYLASVTLADVIGGR 137 >gi|163814456|ref|ZP_02205845.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759] gi|158450091|gb|EDP27086.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759] Length = 144 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 67/136 (49%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + Y +R+++ +I++ + +A C +S+ +L ++ L+KAG + +VRG Sbjct: 1 MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL PA++IT+ V++ E + D +V + + V A + Sbjct: 61 RGGYRLNTPAEEITVGMVLREIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLETAINN 120 Query: 121 VLTQYSIECLVRNRSS 136 VL +I L R S Sbjct: 121 VLDNKTIADLTREYSD 136 >gi|94312314|ref|YP_585524.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356166|gb|ABF10255.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 155 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY + + P I+++ + IS L K+ L K G + RG Sbjct: 6 MQLTRFSDYALRLLMYVSRGDGSRPITIAEVGQQFDISHNHLVKVAARLSKLGWISATRG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L A+++++ +++ E + +C C L G+C L L A AF+ Sbjct: 66 RHGGLQLGPGAEKLSVGAILRELEGRKAIIDCAD---PPCALNGNCRLKRALDDAEEAFY 122 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ + +R++ Sbjct: 123 RALDGVTLADVSGSRTA 139 >gi|325292198|ref|YP_004278062.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium sp. H13-3] gi|325060051|gb|ADY63742.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium sp. H13-3] Length = 153 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++ Y +R L+ A + P +IS IA I + FL +IL + K IVE+ RG++ Sbjct: 9 ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 68 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA IT +V++ + C + DC C + V + +A Sbjct: 69 GGYLLARPAADITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 128 Query: 118 FFDVLTQYSIECLVR 132 ++L ++ V Sbjct: 129 TRNILFNTTVADAVA 143 >gi|300821270|ref|ZP_07101418.1| Rrf2 family protein [Escherichia coli MS 119-7] gi|300899716|ref|ZP_07117942.1| Rrf2 family protein [Escherichia coli MS 198-1] gi|300922416|ref|ZP_07138536.1| Rrf2 family protein [Escherichia coli MS 182-1] gi|300940665|ref|ZP_07155226.1| Rrf2 family protein [Escherichia coli MS 21-1] gi|300949137|ref|ZP_07163179.1| Rrf2 family protein [Escherichia coli MS 116-1] gi|300957838|ref|ZP_07170016.1| Rrf2 family protein [Escherichia coli MS 175-1] gi|300987257|ref|ZP_07178086.1| Rrf2 family protein [Escherichia coli MS 45-1] gi|300988644|ref|ZP_07178784.1| Rrf2 family protein [Escherichia coli MS 200-1] gi|301023423|ref|ZP_07187206.1| Rrf2 family protein [Escherichia coli MS 69-1] gi|301646624|ref|ZP_07246490.1| Rrf2 family protein [Escherichia coli MS 146-1] gi|309796989|ref|ZP_07691389.1| Rrf2 family protein [Escherichia coli MS 145-7] gi|300305877|gb|EFJ60397.1| Rrf2 family protein [Escherichia coli MS 200-1] gi|300315469|gb|EFJ65253.1| Rrf2 family protein [Escherichia coli MS 175-1] gi|300356727|gb|EFJ72597.1| Rrf2 family protein [Escherichia coli MS 198-1] gi|300397010|gb|EFJ80548.1| Rrf2 family protein [Escherichia coli MS 69-1] gi|300407734|gb|EFJ91272.1| Rrf2 family protein [Escherichia coli MS 45-1] gi|300421235|gb|EFK04546.1| Rrf2 family protein [Escherichia coli MS 182-1] gi|300451385|gb|EFK15005.1| Rrf2 family protein [Escherichia coli MS 116-1] gi|300454553|gb|EFK18046.1| Rrf2 family protein [Escherichia coli MS 21-1] gi|300526159|gb|EFK47228.1| Rrf2 family protein [Escherichia coli MS 119-7] gi|301075171|gb|EFK89977.1| Rrf2 family protein [Escherichia coli MS 146-1] gi|308119402|gb|EFO56664.1| Rrf2 family protein [Escherichia coli MS 145-7] gi|315288459|gb|EFU47857.1| Rrf2 family protein [Escherichia coli MS 110-3] gi|315293540|gb|EFU52892.1| Rrf2 family protein [Escherichia coli MS 153-1] gi|315299059|gb|EFU58313.1| Rrf2 family protein [Escherichia coli MS 16-3] gi|323171610|gb|EFZ57256.1| rrf2 family protein family protein [Escherichia coli LT-68] gi|324005241|gb|EGB74460.1| Rrf2 family protein [Escherichia coli MS 57-2] gi|324013821|gb|EGB83040.1| Rrf2 family protein [Escherichia coli MS 60-1] Length = 125 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ IS++ + +S + KI+ L +AG V VRG+ GG+RL +PA I I D Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L L KA+ +F L Y++ LV + Sbjct: 63 VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|83590920|ref|YP_430929.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573834|gb|ABC20386.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica ATCC 39073] Length = 136 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R ++Y A + IA I FL KI++ LV+AGIV++ RG Sbjct: 1 MRLNQATDYAFRAVLYLAKLEPGTIAEAQMIASREDIPMRFLLKIMRSLVQAGIVQSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117 GG L RPA +IT+LDVV+A E V C + C C + L +A Sbjct: 61 VSGGFALARPAREITLLDVVEAVEGPVSVNRCLLDPEY-CNKHGAPCCPVHRALGAVQDA 119 Query: 118 FFDVLTQYSIECLV 131 L +Y+ L Sbjct: 120 LRRELKRYNFAELA 133 >gi|85704358|ref|ZP_01035461.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217] gi|85671678|gb|EAQ26536.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217] Length = 156 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TDY +RVL+Y A + I + + IS L K++ L+ G +E VRG Sbjct: 1 MRLTKFTDYSLRVLLYAATLKPKQLTTIEETSNLYGISRAHLKKVVLGLIHEGFLEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL PA +I + +++ TE F +AECF C + C L VL AL+ F Sbjct: 61 RSGGFRLAMPAHEINLGQLLRKTEPDFALAECFLPENA-CRVTKGCRLPIVLNLALSNFL 119 Query: 120 DVLTQYSIECLV 131 +++ + Sbjct: 120 KTFDDFTLADVA 131 >gi|258514866|ref|YP_003191088.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] gi|257778571|gb|ACV62465.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] Length = 144 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++T+Y I ++ A I QIA I E+FL K +Q L K+GIV T RG Sbjct: 1 MQITRQTEYAIHAVIELAQIPFGDFVLIRQIANKLNIPEMFLKKTVQALNKSGIVVTQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL RP+D++T+ DV+ A E + C C C + +L++ A Sbjct: 61 TNGGVRLSRPSDKLTVADVMAAIEGPLMLNVCLG-ENYQCSNKPFCSIHKILQRTQKAVL 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L++ + +++N+ ++K Sbjct: 120 RELSRETFADIIKNKLRLEK 139 >gi|310643721|ref|YP_003948479.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309248671|gb|ADO58238.1| Putative transcriptional regulator [Paenibacillus polymyxa SC2] Length = 132 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + ++ + P + Q+AEA +S +L KIL LVKAG++E+V G Sbjct: 1 MKFTKATNYALHTMLMLVTDSSVKPIGVQQLAEAQQVSPTYLSKILTRLVKAGMIESVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R D IT LD++ A E + + EC H C + +V+R+A Sbjct: 61 ANGGYRLSRNKDDITFLDIIHAIEGTNSLFECDFVH------GSECLIQAVMREAEEKME 114 Query: 120 DVLTQYSIECLVRNRSSI 137 L + L + ++ I Sbjct: 115 SHLKNTKLVDLAQKQAQI 132 >gi|163740100|ref|ZP_02147503.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis BS107] gi|161386649|gb|EDQ11015.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis BS107] Length = 149 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +TDY +R+L+ A + I ++ + + KI+ LV+ G V ++RGR Sbjct: 1 MKLNLKTDYALRLLILLATRPEQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV++ R +I + D+V A E + +C + C LVG+C L VL +A AF + Sbjct: 61 SGGVQIGRKPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115 Query: 121 VLTQYSIECLVRNRSSI 137 VL Y + L+ + + Sbjct: 116 VLMAYRLSDLIEAPAPV 132 >gi|257792012|ref|YP_003182618.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|257475909|gb|ACV56229.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] Length = 144 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A + + +++E IS +L ++ +PLV+AG++ +VRG Sbjct: 1 MLVSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L + I DV++A E S C + CP G C Sbjct: 61 KGGGYALAQEPAAIRAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVI 120 Query: 119 FDVLTQYSIECLV 131 + ++ L Sbjct: 121 ERYVDGVTLADLA 133 >gi|284046052|ref|YP_003396392.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283950273|gb|ADB53017.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 152 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ +TDY +R + A + +++P + +IA A I FL IL L + GIV + RG Sbjct: 1 MRISAKTDYAVRAAVELAAVTDEHPLKSERIATAQEIPLRFLENILVQLRQGGIVVSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL P ++IT+ DV++A + K+D L V + Sbjct: 61 AEGGYRLALPPEEITVADVIRAIDGPLAAVSGERPEKLDFHGTAE-PLREVWVAVRASLR 119 Query: 120 DVLTQYSIECLV 131 DVL ++ L Sbjct: 120 DVLEHVTLADLA 131 >gi|331000240|ref|ZP_08323924.1| HTH-type transcriptional regulator IscR [Parasutterella excrementihominis YIT 11859] gi|329572406|gb|EGG54059.1| HTH-type transcriptional regulator IscR [Parasutterella excrementihominis YIT 11859] Length = 151 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H + I+ I + +S +L +I L +AG++E VRG Sbjct: 1 MKLTTKGRFAVTAMLDIALHDPEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PADQIT++D+++A ++ A C ++ C G C + Sbjct: 61 PAGGYRLAKPADQITVIDILEAVDDPLEKASC-DKNRAVCDGEGECITFDLWESLNEEIR 119 Query: 120 DVLTQYSIECLVRNRS 135 L S++ L + Sbjct: 120 KFLKGISLKNLADKKK 135 >gi|312792436|ref|YP_004025359.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877006|ref|ZP_07736980.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|311796237|gb|EFR12592.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor lactoaceticus 6A] gi|312179576|gb|ADQ39746.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 137 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY +R++++ + IA+ I + FL KI + LVKAGI+E+VRG+ Sbjct: 1 MKLTQAADYALRMVLHLSKKRGMVVEADTIAQEEKIPKRFLLKISRDLVKAGIIESVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++IT+ DV+ A E + + C + G C + + Sbjct: 61 NGGYTLAKKPEEITMKDVIIAVEGTLALTRCLYDPLACNKKATGYCAVHKAFCSVMEKVS 120 Query: 120 DVLTQYSIECLV 131 D L +Y+ + LV Sbjct: 121 DELEKYTFDKLV 132 >gi|229016279|ref|ZP_04173227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] gi|229022516|ref|ZP_04179048.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228738769|gb|EEL89233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228745050|gb|EEL95104.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] Length = 168 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDDACNSCDPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|229028761|ref|ZP_04184868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|228732543|gb|EEL83418.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] Length = 168 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDDACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|159184477|ref|NP_353841.2| hypothetical protein Atu0819 [Agrobacterium tumefaciens str. C58] gi|159139787|gb|AAK86626.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 146 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++ Y +R L+ A + P +IS IA I + FL +IL + K IVE+ RG++ Sbjct: 2 ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA IT +V++ + C + DC C + V + +A Sbjct: 62 GGYLLARPASDITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 121 Query: 118 FFDVLTQYSIECLVR 132 ++L ++ V Sbjct: 122 TRNILFNTTVADAVA 136 >gi|299144222|ref|ZP_07037302.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518707|gb|EFI42446.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 132 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + +++ + P I+ IA+ +SE +L ++ L K +V+++RG Sbjct: 1 MKLSTKGRYGLMAMYRLSLNYGNGPTPINDIAKEEKLSEAYLEQLFTLLKKKNLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +I I +++ A E ++ + K +C V +C +L K Sbjct: 61 AAGGYELAKSPSEIKIGEILNALEGDIALSCSSMNIKPECRNVETCPTREILEKLQIKLE 120 Query: 120 DVLTQYSIECL 130 +VL ++ + Sbjct: 121 EVLDSMTLADM 131 >gi|121997341|ref|YP_001002128.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121588746|gb|ABM61326.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 150 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 64/135 (47%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + TDYG+ +L A +Q+A A + + + K+++ LV AG++ + RG + Sbjct: 3 RINRETDYGVVILSAMARRPGERVNAAQLAGAHGLPQPMVSKVMKQLVHAGLLCSYRGAK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP ++I++ +V++A E EC S C V C ++ + + Sbjct: 63 GGYGLARPPEEISVAEVIEALEGPIAFTECVESGTDTCTHVEDCNASAAWSRISSVVRQA 122 Query: 122 LTQYSIECLVRNRSS 136 L S+ + S+ Sbjct: 123 LAAVSLAEMGEPASA 137 >gi|228932374|ref|ZP_04095256.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827310|gb|EEM73062.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 168 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|228968749|ref|ZP_04129715.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790927|gb|EEM38562.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] Length = 168 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGVLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|228984158|ref|ZP_04144343.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775595|gb|EEM23976.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 168 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108 +GG RL + + I+ DV++A E + +C C P SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 V+ +A + L + ++ L Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142 >gi|160903152|ref|YP_001568733.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360796|gb|ABX32410.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis SJ95] Length = 156 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M LT ++ Y +R L A+ IS+++E I + FL KI L AGIV++ Sbjct: 1 MSLTVKSSYALRALFELAVLAEDEGKEKVPISELSERQNIPKDFLEKIFIELRDAGIVKS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 VRG+ GG L + + + ++++ ++ +C C L C + V ++ N Sbjct: 61 VRGKFGGYALAKNPKDLRLSEIIQVLDKPLQSFDCIVGE---CSLEIECAVEFVWKRVNN 117 Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140 + L++ +++ ++ I KI Sbjct: 118 SIMLELSKMTLQDIIDYGRKIAKI 141 >gi|194291062|ref|YP_002006969.1| hth transcriptional regulator; upf0074 [Cupriavidus taiwanensis LMG 19424] gi|193224897|emb|CAQ70908.1| putative HTH transcriptional regulator; UPF0074 [Cupriavidus taiwanensis LMG 19424] Length = 150 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY A + P I+++ + IS L K+ L K G V RG Sbjct: 1 MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWVSATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L A+++TI +++ E V +C C L G+C L L A AF+ Sbjct: 61 RHGGLQLGPGAERLTIGTILRELEGHRPVIDC---DNPPCALHGNCHLKRALDVAEQAFY 117 Query: 120 DVLTQYSIECL 130 L ++ + Sbjct: 118 RALDDVTLADV 128 >gi|294852949|ref|ZP_06793621.1| transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294818604|gb|EFG35604.1| transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 166 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C C + V+ A Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 145 ANVLDHRTLAD 155 >gi|302383292|ref|YP_003819115.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Brevundimonas subvibrioides ATCC 15264] gi|302193920|gb|ADL01492.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas subvibrioides ATCC 15264] Length = 159 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M L+ + Y + + A + +++IA IS +L ++ L K+G+V Sbjct: 1 MRLSTKGRYAVMAMADLARNGQGEGAEGRAVSLAEIATRQEISLSYLEQLFARLRKSGLV 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-SCGLTSVLR 112 +VRG GG RL + A + + ++V A +E C A S C + G C ++ Sbjct: 61 RSVRGPGGGYRLAKTAGETVVSEIVLAVDEPIRATRCAAHSSPRGCMMAGERCITHNLWE 120 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139 + L S+E ++ NR+ ++ Sbjct: 121 DLGDEIHRYLASVSLEDVIMNRTGPRR 147 >gi|261252066|ref|ZP_05944639.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891] gi|260935457|gb|EEX91446.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891] Length = 155 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAYS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I I V+ A +ES +C + K DC C ++ R + D L ++ L++ Sbjct: 61 IAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGELMK 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLE 124 >gi|169824321|ref|YP_001691932.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|303234034|ref|ZP_07320683.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4] gi|167831126|dbj|BAG08042.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302494959|gb|EFL54716.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4] Length = 135 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ ++++ EE F V EC + C +C + + + Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGL-CSREDTCPSRLIWTQMHDDMI 119 Query: 120 DVLTQYSIECLVRNRS 135 + + S++ L+ Sbjct: 120 NSIKNVSLQDLISKEK 135 >gi|17988524|ref|NP_541157.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|17984317|gb|AAL53421.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M] Length = 162 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 21 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 80 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C C + V+ A Sbjct: 81 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 140 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 141 ANVLDHRTLAD 151 >gi|255525184|ref|ZP_05392127.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296187437|ref|ZP_06855832.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] gi|255511143|gb|EET87440.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296047959|gb|EFG87398.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] Length = 144 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ LM A++ N + I+E ISE +L +I L K+G+V +G Sbjct: 1 MKISTKGRYGLKALMDIAMYSNSEAVTLKSISERQNISEGYLEQIFSALRKSGLVIGKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + ITI ++++ E + + + D + C ++ Sbjct: 61 AQGGYTLSKHISTITIGEILRTLEGNLSLVDIRDRDDAD--ELERCINENLWDAINKNIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D ++E LV S Sbjct: 119 DYFDSITLEDLVNKYKS 135 >gi|303257496|ref|ZP_07343508.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderiales bacterium 1_1_47] gi|302859466|gb|EFL82545.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderiales bacterium 1_1_47] Length = 151 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H + I+ I + +S +L +I L +AG++E VRG Sbjct: 1 MKLTTKGRFAVTAMLDIALHDPEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PADQIT++D+++A ++ A C ++ C G C + Sbjct: 61 PAGGYRLAKPADQITVIDILEAVDDPLEKASC-DKNRAVCDGEGECITFDLWESLNEEIR 119 Query: 120 DVLTQYSIECLVRNRS 135 L S++ L + Sbjct: 120 KFLKGISLKNLADKKK 135 >gi|293394859|ref|ZP_06639149.1| iron-sulfur cluster assembly transcription factor IscR [Serratia odorifera DSM 4582] gi|291422610|gb|EFE95849.1| iron-sulfur cluster assembly transcription factor IscR [Serratia odorifera DSM 4582] Length = 151 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG GG L + A + Sbjct: 1 MLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKDAAE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A +ES C K C C ++ R L ++ LV Sbjct: 61 IAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERISGFLNNITLAELVN 118 Query: 133 NRSSI 137 N+ + Sbjct: 119 NQEVL 123 >gi|317484710|ref|ZP_07943611.1| transcriptional regulator [Bilophila wadsworthia 3_1_6] gi|316924066|gb|EFV45251.1| transcriptional regulator [Bilophila wadsworthia 3_1_6] Length = 168 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+ A ++++IA +S +L +I++ L AGI+ + RG Sbjct: 1 MRYSTRTRYGLRFLINLAGRPAGACVQLAEIAREEGVSVKYLEQIVRVLRPAGILRSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + D I + +V + E EC K C G C R+ + Sbjct: 61 AKGGYALAKSPDAIRMDEVFERLEGHISPVECLHGAK-SCEREGVCPTRWFWRELDDHMR 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ V ++K Sbjct: 120 MFLKGMTLARFVERERALK 138 >gi|113869472|ref|YP_727961.1| putative transcriptional regulator [Ralstonia eutropha H16] gi|113528248|emb|CAJ94593.1| putative transcriptional regulator [Ralstonia eutropha H16] Length = 150 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +DY +R+LMY A + P I+++ + IS L K+ L K G + RG Sbjct: 1 MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWISATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG++L A+++TI +++ E V +C C L G+C L L A AF+ Sbjct: 61 RHGGLQLGPGAERLTIGTILRELEGHKAVIDC---DNPPCALNGNCRLKRALDVAEQAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ + ++++ Sbjct: 118 LALDDVTLADVTGSQTA 134 >gi|189023190|ref|YP_001932931.1| RRF2 family protein [Brucella abortus S19] gi|225686866|ref|YP_002734838.1| Rrf2 family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237817484|ref|ZP_04596475.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] gi|254706516|ref|ZP_05168344.1| transcriptional regulator, Rrf2 family protein [Brucella pinnipedialis M163/99/10] gi|256261998|ref|ZP_05464530.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|260757261|ref|ZP_05869609.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260883065|ref|ZP_05894679.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297250169|ref|ZP_06933870.1| transcriptional regulator, Rrf2 family protein [Brucella abortus bv. 5 str. B3196] gi|189021764|gb|ACD74485.1| RRF2 family protein [Brucella abortus S19] gi|225642971|gb|ACO02884.1| transcriptional regulator, Rrf2 family protein [Brucella melitensis ATCC 23457] gi|237787319|gb|EEP61536.1| rrf2 family protein (transcriptional regulator) [Brucella abortus str. 2308 A] gi|260677369|gb|EEX64190.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872593|gb|EEX79662.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|263091482|gb|EEZ16018.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9] gi|297174038|gb|EFH33402.1| transcriptional regulator, Rrf2 family protein [Brucella abortus bv. 5 str. B3196] Length = 166 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C C + V+ A Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 145 ANVLDHRTLAD 155 >gi|254421110|ref|ZP_05034834.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] gi|196187287|gb|EDX82263.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] Length = 146 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ R+ Y +R +++ A + P I +IAEA FL IL L + ++ + RGR Sbjct: 2 LSNRSRYALRAMIHLAGLPGGGPATIGEIAEAATAPRKFLEAILLDLRRQNLLVSKRGRT 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L PA+ I+ DV++A E +A C + CP V +C L VL+ +A Sbjct: 62 GGYALAAPAETISFADVIRALEGPLALAPCASRTAHGPCETCPDVETCPLQPVLQDGRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 V S+ N S I + Sbjct: 122 VAAVFEARSLLQAASNPSPIDPV 144 >gi|239907465|ref|YP_002954206.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239797331|dbj|BAH76320.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 151 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +Y IR ++Y A+H D +IAEA I FL K+ Q L KAG++ +G Sbjct: 1 MRLTRAGEYAIRCVLYLAMHQDRTLIGRKEIAEAMDIPAQFLGKVAQQLAKAGVISIRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT+L V++A + F+ +C C C + +V A Sbjct: 61 SLGGYELARRPQDITLLAVIEAIDGEIFLNDCIQRPG-SCDRQAICSVHNVWDTARRQLR 119 Query: 120 DVLTQYSIECLVR 132 D L ++ L Sbjct: 120 DTLGSTTLAELAA 132 >gi|118590662|ref|ZP_01548063.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614] gi|118436638|gb|EAV43278.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614] Length = 143 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +D+ +R+LM +D P + ++++ +++ + KI+ L K G +ET RGR Sbjct: 1 MRLSQASDFALRILM-ATGQSDDPQTVDKLSKQLGLAKSHVMKIVAHLAKGGYLETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + I + DVV+ E V C C + C L + +A AF Sbjct: 60 GGGIRLAKAPATIRLGDVVRLIEPDLGVVACLKPEPTVCAFLPRCALKGAMAQASEAFLA 119 Query: 121 VLTQYSIECLVR 132 L ++ ++ Sbjct: 120 SLNTETLASILA 131 >gi|46580376|ref|YP_011184.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602251|ref|YP_966651.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46449793|gb|AAS96443.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120562480|gb|ABM28224.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris DP4] gi|311233649|gb|ADP86503.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris RCH1] Length = 173 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ Y R+L+ A H P S++A+ IS F+ KI++ L AG+V +VR Sbjct: 1 MRISSTVHYASRLLVNLAQHTPAAGPVSASELADRTGISVKFIEKIIRQLRTAGMVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + +T+ DV++ E C DC C + A A Sbjct: 61 GATGGHLLSMRPEDVTLGDVLRVVEGGVQPPNCCVGD--DCEDTP-CRCKTAWISAAKAL 117 Query: 119 FDVLTQYSIECLVRNRS 135 L QY++ ++ + Sbjct: 118 EATLDQYTLADIMSTQP 134 >gi|152981815|ref|YP_001352304.1| transcriptional regulator [Janthinobacterium sp. Marseille] gi|151281892|gb|ABR90302.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 152 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +D G+RVLMY A + P ++++A + L K++ L K G ++ VRG Sbjct: 1 MKLTRFSDIGLRVLMYLARESRSPSVTVAEVALQFDVPHNHLVKVVGMLAKMGWIDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L D + I +++ E +C I C L G C L + L+ ++AF+ Sbjct: 61 RNGGISLAASPDTLHIGSILRVLEGDAEAIDC---EGIGCRLSGDCRLRNALKIGVDAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 + + +Y++ +V + Sbjct: 118 NAMDEYTLADIVSGNTG 134 >gi|307544373|ref|YP_003896852.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581] gi|307216397|emb|CBV41667.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581] Length = 169 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ TDY V+ A H + P+ +++AEA + + K L+ LV+AG++E+ RG + Sbjct: 19 KLSRLTDYAAVVMAQIARHPEQPHAAAELAEAVSLPHPTVSKTLKMLVRAGLLESRRGAQ 78 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RPA +I+ D++ A E + EC + + DC LV CG++ ++ A + Sbjct: 79 GGYSLARPASRISASDIISAIEGPVAMTEC-SQAEGDCDLVSVCGVSDNWQRVSLAVRTL 137 Query: 122 LTQYSIECLVR 132 L ++ L Sbjct: 138 LDSVTLAHLAD 148 >gi|78358758|ref|YP_390207.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221163|gb|ABB40512.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 164 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + YG R+L+ A+H + P + +AE +S+ +L KI + L +AG ++ RG Sbjct: 1 MRLLTNSRYGTRMLLDVAVHGRNGPVLMRDVAERLGVSQKYLEKIARQLKEAGFLKAQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R T+ DVV+ E + C + C C + ++A A F Sbjct: 61 PNGGHTLARDVTTFTVGDVVRLLEGGTDIVGC-GRDEEGCTHAPGCLTRMLWKEAGIAMF 119 Query: 120 DVLTQYSIECLVR 132 + L +++ LV Sbjct: 120 ERLDRFTFAELVA 132 >gi|212696195|ref|ZP_03304323.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM 7454] gi|212676824|gb|EEB36431.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM 7454] Length = 134 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S I+ + E +L ++++ L K +V + RG Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKKNNLVISARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R A IT+ DV++A E ++C A + +C C V K +A Sbjct: 61 AKGGYKLSRSASDITVGDVLRALEGEMTSSQCVAD-RNNC-NNEECEAYYVFAKIDDAIN 118 Query: 120 DVLTQYSIECLVRNR 134 + + +I+ +V + Sbjct: 119 NAVNSITIKDMVNEK 133 >gi|217976745|ref|YP_002360892.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] gi|217502121|gb|ACK49530.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] Length = 149 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + ++ IA A I + FL IL L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGYLPGEATLVTDIATANQIPKKFLDTILGELRNAGFVNSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I + +V+ + +C + DC CG+ ++ +A NA Sbjct: 62 GGYTLARPAHEIKVGHIVRVLDGPLAPIQCASATSYRRCDDCTDEKRCGVRLIMLEARNA 121 Query: 118 FFDVLTQYSIECL 130 +VL ++ + Sbjct: 122 IAEVLDNRTLAEM 134 >gi|116622605|ref|YP_824761.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225767|gb|ABJ84476.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 141 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ DY +R++++ A + +D + +A AC I E F+ KILQ L ++G++ + RG Sbjct: 1 MQLTRAADYAVRMMIHLATLPSDSRTNRAALAAACEIPEPFVGKILQTLTRSGLIASHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +++LDV++A E + C C C V +A +A Sbjct: 61 VNGGFGLTQPPTAVSLLDVIEAVEGPTLLNICIRPGD-SCARKSWCPAHPVWVEAQHAMT 119 Query: 120 DVLTQYSIECLVRN 133 VL + ++ L ++ Sbjct: 120 AVLGRATLASLAQS 133 >gi|260771408|ref|ZP_05880333.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972] gi|260613534|gb|EEX38728.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972] gi|315180989|gb|ADT87903.1| HTH-type transcriptional regulator iscR [Vibrio furnissii NCTC 11218] Length = 163 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL Sbjct: 1 MTAMLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGSD 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A+ I+I V+ A +ES +C + K DC C ++ R + D L ++ Sbjct: 61 ANTISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGE 118 Query: 130 LVRNRSSIK 138 L+ + ++ Sbjct: 119 LMIDNEVLE 127 >gi|154252525|ref|YP_001413349.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156475|gb|ABS63692.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 148 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++ Y ++ ++ A + + + IAE + FL IL L K G+V + RG+ Sbjct: 2 LSQKAKYALKAMIALATQEEGDLLQAADIAERQNVPRKFLELILLDLRKHGLVRSQRGKF 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PAD IT V++ + C + DC SC + +R+ +A Sbjct: 62 GGYALAKPADAITFGQVIRIMDGPLAPIPCASLTGYRRCADCRDEKSCAVRRTMREVRDA 121 Query: 118 FFDVLTQYSIEC 129 +L +I Sbjct: 122 AAAILDGTTIAD 133 >gi|222085200|ref|YP_002543730.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722648|gb|ACM25804.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 148 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALSALAQAEAGEPTMISDIATQQKIPKKFLEQILLDLKHQGIVISRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA++IT ++++ + C + DC +C + V + +A Sbjct: 62 GGYLLRKPAEEITFGEILRIIDGPIAPLPCLSITAYRRCEDCDGEQTCEIRHVFARVADA 121 Query: 118 FFDVLTQYSIEC 129 VL +I Sbjct: 122 TRKVLFSTTIAD 133 >gi|254393536|ref|ZP_05008671.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|326439617|ref|ZP_08214351.1| rrf2 family protein, putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197707158|gb|EDY52970.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 150 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +R+ M A+H+D P ++A A + K++ L G+VE RG Sbjct: 1 MRLTKGTDLALRIAMRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L +I +V+ E + V C CPL +C L SVLR A AF+ Sbjct: 61 RGGGLALTTAGRTGSIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFY 118 Query: 120 DVLTQYSIECLVRNRS 135 L Y+++ LV + + Sbjct: 119 TALDPYTVDDLVASPT 134 >gi|268592506|ref|ZP_06126727.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri DSM 1131] gi|291311912|gb|EFE52365.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri DSM 1131] Length = 180 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 10/146 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H+T +YGI L++ + + ++AE IS FL KIL L KAGIV + G R Sbjct: 3 HITVSVEYGIHCLLWFVDNPERSLSSRELAELQGISPSFLAKILPRLEKAGIVSSNEGIR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTSVL 111 GG RL P ++IT L ++ A E + EC + + G+C + V+ Sbjct: 63 GGYRLALPPEKITFLSIIDAIEGYKPLFECQEIRRRCAVFEENGLPQWAISGTCSVHKVI 122 Query: 112 RKALNAFFDVLTQYSIECLVRNRSSI 137 +A NA DVL ++ + + I Sbjct: 123 LQAENAMRDVLANQTLADVAQRLCQI 148 >gi|94967516|ref|YP_589564.1| BadM/Rrf2 family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549566|gb|ABF39490.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Koribacter versatilis Ellin345] Length = 145 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LTK+ DYG+ + + A + D +AE + + L K+LQ L KAG++++ +G Sbjct: 3 KLTKKADYGLIAMRHLAANADLGACSAKDLAEMYGLPQEALAKLLQRLTKAGLLQSQQGT 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R I+ LDV++A E F+ C + K C C + LRK + D Sbjct: 63 NGGYTLARNPRSISALDVIRALEGPLFMTSC-TTAKGSCEQTSKCTVREPLRKVSKSIED 121 Query: 121 VLTQYSIECLVRNRSSIKKI 140 VL + +I + + ++ + Sbjct: 122 VLGRLTIAEMCESEEPVRDL 141 >gi|306841295|ref|ZP_07474006.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] gi|306288697|gb|EFM60028.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2] Length = 166 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA++I I ++++A + + C + C C + V+ A Sbjct: 85 GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 145 ANVLDHRTLAD 155 >gi|312116284|ref|YP_004013880.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311221413|gb|ADP72781.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 150 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 6/145 (4%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ ++Y A D P I++IAEA I + FL IL L G++ + +G+ Sbjct: 2 LSAKCKYGLKAMVYIARRGDKGPVLIAEIAEAENIPKKFLDVILLELKVNGMLTSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEES-FFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG +L R +IT+ D+V+ C + DC +C + SV+ + + Sbjct: 62 GGYQLARRPGKITVADIVRVLGGPNLAPVPCVSKLNYRPCTDCRDEQTCVIRSVMLEVRD 121 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIF 141 A VL ++E + + ++ Sbjct: 122 AIAAVLENVTLEEMSNRVPAAAQVL 146 >gi|161505130|ref|YP_001572242.1| transcriptional repressor NsrR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866477|gb|ABX23100.1| hypothetical protein SARI_03264 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 125 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ I I D Sbjct: 3 SLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L L KA+ +F L Y++ LV + Sbjct: 63 VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVRSFLKELDNYTLADLVEENQPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|258511997|ref|YP_003185431.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478723|gb|ACV59042.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 136 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 11/137 (8%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +L+ A +D P + IAE +SE +L +++ PL G V ++RG Sbjct: 1 MKISTKGRYGLMLLVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I I DV+ A E + + GL + + A Sbjct: 61 AYGGYVLARHPREIVIEDVLLALEGPITIVDEEIDD----------GLQVLWDRLREAIH 110 Query: 120 DVLTQYSIECLVRNRSS 136 DVL+ +++ LV R Sbjct: 111 DVLSSMTLQDLVELRQG 127 >gi|295982422|pdb|3LWF|A Chain A, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution gi|295982423|pdb|3LWF|B Chain B, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution gi|295982424|pdb|3LWF|C Chain C, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution gi|295982425|pdb|3LWF|D Chain D, Crystal Structure Of Putative Transcriptional Regulator (Np_ From Listeria Innocua At 2.06 A Resolution Length = 159 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 9/136 (6%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGA 80 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L ++IT D+++ E + E + + + NA D Sbjct: 81 HGGYVLNGDPEKITAGDIIRTLEGPIVLVESXEDEEA--------AQRELWTRXRNAVRD 132 Query: 121 VLTQYSIECLVRNRSS 136 VL Q ++ L+++ + Sbjct: 133 VLDQTTLSDLLKHSTD 148 >gi|15613219|ref|NP_241522.1| hypothetical protein BH0656 [Bacillus halodurans C-125] gi|4512355|dbj|BAA75320.1| similar to B.subtilis ywgB gene(27%-identity) [Bacillus halodurans] gi|10173270|dbj|BAB04375.1| BH0656 [Bacillus halodurans C-125] Length = 132 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + Q+AE +S +L KIL L KAG++E+V G Sbjct: 1 MKYSKATNYALHTVLFLAAATPSKFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R ++I+ LDV+ A E + + +C +H C + V+ A Sbjct: 61 ANGGYRLKRDWEEISFLDVIHAIEGTASLFDCDLNH------GSECLIQKVMVSAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 D L + I L + Sbjct: 115 DYLREQKIADLTKK 128 >gi|294013386|ref|YP_003546846.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676716|dbj|BAI98234.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 154 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + ++ A H + ++ I K++ L AG++E+ RG Sbjct: 1 MRLSSFADYAVVLMSAAARHCGVAKMNATTLSAETGIPLPTAQKLVSRLSAAGLLESSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL RP IT+ DVV+A E + C DC L C + + A NA Sbjct: 61 TGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIRPHMNVANNAIR 120 Query: 120 DVLTQYSIECLVRN 133 L +I L R Sbjct: 121 SALAGVTIASLARE 134 >gi|134093901|ref|YP_001098976.1| hypothetical protein HEAR0652 [Herminiimonas arsenicoxydans] gi|133737804|emb|CAL60849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 151 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +D G+RVLMY A P ++++A + L K++ L K G ++ VRG Sbjct: 1 MKLTRFSDIGLRVLMYLAREARSPSVTVAEVAMQFDVPHNHLVKVVGALAKMGCIDAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L AD++ I DV++ E + +C +I C L C L + L+ + AF+ Sbjct: 61 RNGGIHLAVAADKLLIGDVLRMLEGDTEMVDC---ERIGCRLSSDCLLRNALKVGVEAFY 117 Query: 120 DVLTQYSIECLVRNR 134 D + Y++ +V Sbjct: 118 DAMNLYTLADIVNGN 132 >gi|254490830|ref|ZP_05104013.1| Transcriptional regulator superfamily [Methylophaga thiooxidans DMS010] gi|224464002|gb|EEF80268.1| Transcriptional regulator superfamily [Methylophaga thiooxydans DMS010] Length = 129 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 73/128 (57%), Gaps = 1/128 (0%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MY A++ D+ I+ IA+ ISE L K++ L + ++T+RG+ GG+RL + +I+ Sbjct: 1 MYLALNQDHVVTIANIADTYKISENHLTKVVHYLGQQAYIKTIRGKGGGMRLNKTPTEIS 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + D+ + TE + C + + DC ++ C L ++L ++ A + V +Y++ LV ++ Sbjct: 61 LGDLFRKTEGKAGLLPCV-NGEGDCCIMSVCRLIAILNESQQALYHVFDKYTLADLVVDK 119 Query: 135 SSIKKIFN 142 S+ +I Sbjct: 120 FSLSQILT 127 >gi|71083441|ref|YP_266160.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91762136|ref|ZP_01264101.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71062554|gb|AAZ21557.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717938|gb|EAS84588.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 141 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + L A ++ P + I+ IS FL +I L K IV+++RG Sbjct: 1 MKLTSKGRYAVMALADLAKFNSVNPVSLRDISLRQGISLDFLEQIFSKLKKYNIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 GG L + ++I + +++ A +E +C K C C ++ + Sbjct: 61 TNGGYILNKEPEEIKLANILSAVDEEVKTVQCKKESKKGCNSKTTKCITHNLWDELEVHI 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 Q +++ L+ N S + Sbjct: 121 NHFFEQKNLKDLISNSSESR 140 >gi|302873942|ref|YP_003842575.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307689807|ref|ZP_07632253.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302576799|gb|ADL50811.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 167 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 19/145 (13%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y I L+Y I +A ISE +L K+ L K+GIV+++ G Sbjct: 1 MKFSVGVEYAIHCLLYMVNSEEGTSVGIRDLATFQGISETYLSKVYAKLSKSGIVKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105 +GG L R A++IT DVV+A E S +C CP C Sbjct: 61 VKGGYALARSAEEITFWDVVEAVEGSEPFFQCAEIRQKNILLDKDNLPDTHTKCP----C 116 Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130 + V+ +A + L+ ++ L Sbjct: 117 LIKVVMLEAEDEMRKYLSNKTLAWL 141 >gi|150018353|ref|YP_001310607.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904818|gb|ABR35651.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 167 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y I L+Y + I +A ISE +L K+ L KAGI++++ G Sbjct: 1 MKFSVGVEYAIHCLLYMVKLEEGKSVGIRDLATFQGISETYLSKVYAKLSKAGIIKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105 +GG L R A++IT D+V+A E S +C CP C Sbjct: 61 VKGGYALARSAEEITFWDIVEAVEGSESFFQCAEIRQNNILLDKDNLPDTHAKCP----C 116 Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130 + V+ +A + L + S+ L Sbjct: 117 LIKVVMSEAEDEMRKYLRKKSLAWL 141 >gi|238918376|ref|YP_002931890.1| transcriptional repressor NsrR [Edwardsiella ictaluri 93-146] gi|238867944|gb|ACR67655.1| HTH-type transcriptional regulator NsrR [Edwardsiella ictaluri 93-146] Length = 124 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ I+Q+ +S + KI+ L +AG V VRG+ GG+RL RPA +I I D Sbjct: 3 ALPEGQMTSITQVTAVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L VLR+A +AF L Q ++ L+ + + Sbjct: 63 VVRELE-PLTLVNCSQAF---CHITPACRLKQVLRRATDAFLTELDQCTLADLIEHNPPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|193213019|ref|YP_001998972.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum NCIB 8327] gi|193086496|gb|ACF11772.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum NCIB 8327] Length = 141 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y A+ + P + ++A S++FL K +Q L KAGI +V+G Sbjct: 3 QVSRKFEYGLHAVSYLAMKGPERPVTVKELASEIGFSQVFLAKAMQSLNKAGITRSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L RPA+QIT+ D+ A E + C + DC + +C + + Sbjct: 63 KGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCDCEIESTCSHKAYMFNLQKRIQQ 121 Query: 121 VLTQYSIECLVRNRSS 136 +L + ++ L+ N + Sbjct: 122 LLAETTVASLLHNYHA 137 >gi|302380671|ref|ZP_07269136.1| transcriptional regulator, Rrf2 family [Finegoldia magna ACS-171-V-Col3] gi|302311614|gb|EFK93630.1| transcriptional regulator, Rrf2 family [Finegoldia magna ACS-171-V-Col3] Length = 135 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ ++++ EE F V EC + C +C + + + Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGL-CSREDTCPSRLIWTQMHDDMI 119 Query: 120 DVLTQYSIECLV 131 + + S++ L+ Sbjct: 120 NSIKNVSLQDLI 131 >gi|110636622|ref|YP_676829.1| BadM/Rrf2 family transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279303|gb|ABG57489.1| transcriptional regulator, BadM/Rrf2 family [Cytophaga hutchinsonii ATCC 33406] Length = 140 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+ Y ++ L++ + + D I++I+E I + FL +IL L K GI+++ RG+ Sbjct: 2 LSKKAKYALKALLFLSKNTDRGVVLIAEISETEGIPKKFLEQILLELKKQGILQSKRGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA++I I VV+ + C + +C +C + ++ + +A Sbjct: 62 GGYFLGKPANEIGIGQVVRIIDGPLAPIPCVSKMAYRRCDECIDEKTCEIRNLFLQVRDA 121 Query: 118 FFDVLTQYSIECLVRNR 134 ++L + S+ L + Sbjct: 122 TIEILDKTSLSDLEQKN 138 >gi|313888209|ref|ZP_07821883.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845899|gb|EFR33286.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus harei ACS-146-V-Sch2b] Length = 131 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + YG+ + + P + IA+ +SE +L ++ L KA +V+++RG Sbjct: 1 MKLSTKGRYGLMAMYNLKENMGKGPIALKDIAKDENLSESYLEQLFTLLRKADLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I I +++ A E ++ C + C C +L K Sbjct: 61 AGGGYVLARDPQNIAIGEIINALEGDISLSCCDLGKNVACGKQADCATRDILSKLQGKIE 120 Query: 120 DVLTQYSIECL 130 V+ ++ + Sbjct: 121 GVMESMTLADM 131 >gi|157147850|ref|YP_001455169.1| transcriptional repressor NsrR [Citrobacter koseri ATCC BAA-895] gi|157085055|gb|ABV14733.1| hypothetical protein CKO_03654 [Citrobacter koseri ATCC BAA-895] Length = 125 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ IS++ E +S + KI+ L +AG V +RG+ GG+RL +PA+ I I D Sbjct: 3 SLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPANVIVIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L L KA+ +F L Y++ LV + Sbjct: 63 VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|296115761|ref|ZP_06834387.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977738|gb|EFG84490.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 151 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R L Y +H D I ++A A ISE L K++ L + G ++T+RGR GG+ L R A Sbjct: 1 MRTLFYVGLHTDRRVSIREVANAYGISENHLVKVIHKLGRGGFIQTMRGRGGGLTLARAA 60 Query: 71 DQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 D+I I DVV+ TEE + C + C L C L +L +A++AF VL ++ Sbjct: 61 DEIRIGDVVRYTEEDMNLVACEPTTVDGRSCVLARHCRLRGLLGQAIDAFMMVLDGATLG 120 Query: 129 CLVRNRSS--IKKIF 141 L+ + +++IF Sbjct: 121 SLLTDEDCVVLRQIF 135 >gi|326626056|gb|EGE32401.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 117 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ I I DVV+ E Sbjct: 2 TSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELE- 60 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 + C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 61 PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 114 >gi|254421032|ref|ZP_05034756.1| rrf2 family protein (putative transcriptional regulator) [Brevundimonas sp. BAL3] gi|196187209|gb|EDX82185.1| rrf2 family protein (putative transcriptional regulator) [Brevundimonas sp. BAL3] Length = 160 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP------NRISQIAEACCISELFLFKILQPLVKAGIV 54 M L+ + Y + + A + +++IA IS +L ++ L K+ +V Sbjct: 1 MRLSTKGRYAVMAMADLAKNGRGESGEIRAVSLAEIAARQEISLSYLEQLFARLRKSDLV 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVG-SCGLTSVLR 112 ++VRG GG RL + A + + ++V A +E C A C + G C + Sbjct: 61 KSVRGPGGGYRLAKGAHETVVAEIVLAVDEPIRATRCVAHGSPKGCMMAGERCITHDLWE 120 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139 + L S+E +V NR+ ++ Sbjct: 121 DLGDEIHRYLAGVSLEDVVMNRTGQRR 147 >gi|154502553|ref|ZP_02039613.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149] gi|153796745|gb|EDN79165.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149] Length = 142 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y + + + A+H D ++ IA+ +SE +L +I++ L +AG+V++VR Sbjct: 1 MKMSTRGQYALEIAVDLALHLMPDRLESLNDIAKRRNLSEKYLERIMKLLKEAGLVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + +I++L+V++A E C + C S + Sbjct: 61 GAYGGYCLTKEPGEISVLEVLRAAEGQLAPVSCLVENTECGMECEICSTKSTWGEMWEQI 120 Query: 119 FDVLTQYSIECLVR 132 D + ++ + Sbjct: 121 LDTAAEVTVADIAE 134 >gi|52785847|ref|YP_091676.1| hypothetical protein BLi02094 [Bacillus licheniformis ATCC 14580] gi|163119474|ref|YP_079257.2| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52348349|gb|AAU40983.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|145902981|gb|AAU23619.2| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 133 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L KAG++E+ G Sbjct: 1 MKYSKATNYALHTMLFLAAGAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESASG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R + I+ LD++ A E + + +C +H C + V+ A + Sbjct: 61 ANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNH------GSECVIQKVMVSAEDEME 114 Query: 120 DVLTQYSIECLVRN 133 + L Q I L + Sbjct: 115 NYLRQQKISDLAKK 128 >gi|295094610|emb|CBK83701.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp. ART55/1] Length = 136 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +RV+ AI++D + +I + +S+ +L I++ L KA ++E G Sbjct: 1 MVISSKGEYALRVMADLAINHDGRFIPLKEIVQKEELSQKYLESIMRMLSKANLIEAASG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + ++ T+ ++++ TE C + + C G C + + Sbjct: 61 HGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSAMTCDRSGQCYTLPIWQGLAELIQ 120 Query: 120 DVLTQYSIECLVRN 133 D ++ + RN Sbjct: 121 DYFQGKTLADIARN 134 >gi|212702242|ref|ZP_03310370.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098] gi|212674305|gb|EEB34788.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098] Length = 149 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+ A D ++ Q+A+ IS +L +I++ L GI+ VRG Sbjct: 1 MKFSTRTRYGLRFLLRLAAQPDNSLLQLGQVAQEESISPGYLEQIVRALKPLGILRAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +I + DV E C K+ C G C + + Sbjct: 61 SGGGYALSKPPSEINMEDVFLHLEGEISPVSCLGRGKV-CQREGLCSTRAFWHQLDEHVR 119 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ + S Sbjct: 120 DFLRHQTLQNIIESERS 136 >gi|161621161|ref|YP_001595047.1| rrf2 family protein [Brucella canis ATCC 23365] gi|163845438|ref|YP_001623093.1| Rrf2 family transcriptional regulator protein [Brucella suis ATCC 23445] gi|161337972|gb|ABX64276.1| rrf2 family protein [Brucella canis ATCC 23365] gi|163676161|gb|ABY40271.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC 23445] Length = 166 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C C + V+ A Sbjct: 85 GGFCLTHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 145 ANVLDHRTLAD 155 >gi|283458758|ref|YP_003363397.1| putative transcriptional regulator [Rothia mucilaginosa DY-18] gi|283134812|dbj|BAI65577.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18] Length = 222 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +RVLM A+ +IAE + K + LV G +++ RG Sbjct: 67 MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 126 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGV L T+ +++ATE + EC CPL C L +VL KA AF+ Sbjct: 127 RSGGVMLSDAGRSATVGTILRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 185 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + I L + +F Sbjct: 186 ASVDSVIISELTAGARPVGPVF 207 >gi|153004144|ref|YP_001378469.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027717|gb|ABS25485.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. Fw109-5] Length = 158 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 2/131 (1%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ DYG+R ++Y A I + +IA + E FL KIL+ LV +V + RG Sbjct: 6 RISRKIDYGLRAMIYLASIPQESVVPFREIARQMDVPEDFLAKILKTLVDQSLVRSTRGP 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +I+ LDV++A E + C C +C + SV R+ D Sbjct: 66 HGGYALARTPSEISFLDVIEAVEGPVALNVCLDGEDA-CGHSTACTMVSVWRQGQERMLD 124 Query: 121 VLTQYSIECLV 131 V Q + L Sbjct: 125 VYRQAKLNELA 135 >gi|300723225|ref|YP_003712525.1| hypothetical protein XNC1_2289 [Xenorhabdus nematophila ATCC 19061] gi|297629742|emb|CBJ90348.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 180 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 10/139 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T +YGI L++ + D ++AE IS FL KIL L KAGIV + G RG Sbjct: 4 ITVSVEYGIHCLLWFVDNPDRSLSSRELAELQGISPSFLAKILPRLEKAGIVNSNEGIRG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTSVLR 112 G RL PA++IT L ++ A E + EC ++ D + +C + V+ Sbjct: 64 GYRLALPAEKITFLSIIDAIEGYKPLFECQEVRQRCAIFENTNPPDWAISDTCSVHKVIL 123 Query: 113 KALNAFFDVLTQYSIECLV 131 +A A DVL ++ + Sbjct: 124 QAEKAMRDVLANQTLADVA 142 >gi|332975848|gb|EGK12726.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437] Length = 210 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 18/149 (12%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +K TDY + L++ A H+++ I +++ + +SE +L KI+ L + GIV V G Sbjct: 52 QFSKSTDYALHALIHLA-HSEHRRNIGIKELSASLGVSESYLSKIMSKLRRDGIVRAVPG 110 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------------FASHKIDCPLVGS 104 GG L RPA QIT L+V+ E + EC A DC Sbjct: 111 VNGGYELARPAGQITFLEVIHVIEGRQSLFECSTLNSKQHRLLAEERAADRDRDCQGNSE 170 Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 C + V+ A + L +++I+ ++ Sbjct: 171 CLVKKVMDGAEQHLYQYLREHTIQSVLDE 199 >gi|62317939|ref|YP_223792.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941] gi|254691631|ref|ZP_05154885.1| RfF2 family protein [Brucella abortus bv. 6 str. 870] gi|254695073|ref|ZP_05156901.1| RfF2 family protein [Brucella abortus bv. 3 str. Tulya] gi|254698170|ref|ZP_05159998.1| RfF2 family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699245|ref|ZP_05161073.1| RfF2 family protein [Brucella suis bv. 5 str. 513] gi|254711200|ref|ZP_05173011.1| RfF2 family protein [Brucella pinnipedialis B2/94] gi|254711800|ref|ZP_05173611.1| RfF2 family protein [Brucella ceti M644/93/1] gi|254714868|ref|ZP_05176679.1| RfF2 family protein [Brucella ceti M13/05/1] gi|254731614|ref|ZP_05190192.1| RfF2 family protein [Brucella abortus bv. 4 str. 292] gi|256030172|ref|ZP_05443786.1| RfF2 family protein [Brucella pinnipedialis M292/94/1] gi|256059824|ref|ZP_05450018.1| RfF2 family protein [Brucella neotomae 5K33] gi|256112195|ref|ZP_05453116.1| RfF2 family protein [Brucella melitensis bv. 3 str. Ether] gi|256256818|ref|ZP_05462354.1| RfF2 family protein [Brucella abortus bv. 9 str. C68] gi|260544123|ref|ZP_05819944.1| RRF2 family protein [Brucella abortus NCTC 8038] gi|260564084|ref|ZP_05834569.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|260759374|ref|ZP_05871722.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762617|ref|ZP_05874949.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|261215425|ref|ZP_05929706.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261216557|ref|ZP_05930838.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261313970|ref|ZP_05953167.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261318791|ref|ZP_05957988.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261319428|ref|ZP_05958625.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261323803|ref|ZP_05963000.1| transcriptional regulator [Brucella neotomae 5K33] gi|261749683|ref|ZP_05993392.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|265987202|ref|ZP_06099759.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265993622|ref|ZP_06106179.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|62198132|gb|AAX76431.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941] gi|260097394|gb|EEW81268.1| RRF2 family protein [Brucella abortus NCTC 8038] gi|260151727|gb|EEW86820.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M] gi|260669692|gb|EEX56632.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673038|gb|EEX59859.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260917032|gb|EEX83893.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921646|gb|EEX88214.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261292118|gb|EEX95614.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261298014|gb|EEY01511.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261299783|gb|EEY03280.1| transcriptional regulator [Brucella neotomae 5K33] gi|261302996|gb|EEY06493.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739436|gb|EEY27362.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262764492|gb|EEZ10524.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|264659399|gb|EEZ29660.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|326411283|gb|ADZ68347.1| RRF2 family protein [Brucella melitensis M28] gi|326554572|gb|ADZ89211.1| RRF2 family protein [Brucella melitensis M5-90] Length = 143 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C C + V+ A Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 122 ANVLDHRTLAD 132 >gi|257414160|ref|ZP_04745427.2| iron-sulfur cluster assembly transcription factor IscR [Roseburia intestinalis L1-82] gi|257201011|gb|EEU99295.1| iron-sulfur cluster assembly transcription factor IscR [Roseburia intestinalis L1-82] Length = 130 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A++N P + IA IS+ +L +I+ L KA V+++RG +GG L + ++ Sbjct: 1 MLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRGAQGGYILTKRPEE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 T+ +++ TE S C C + C V +K A V+ ++ LV Sbjct: 61 YTVGMILRLTEGSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAINQVVDSITLADLVD 119 >gi|197121676|ref|YP_002133627.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Anaeromyxobacter sp. K] gi|196171525|gb|ACG72498.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. K] Length = 160 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG Sbjct: 6 RISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRGP 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R I+ LDV+++ E + C C +C + SV R D Sbjct: 66 HGGYALARMPADISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERMLD 124 Query: 121 VLTQYSIECLV 131 V Q + L Sbjct: 125 VYRQAKLSELA 135 >gi|254720792|ref|ZP_05182603.1| RfF2 family protein [Brucella sp. 83/13] gi|265985850|ref|ZP_06098585.1| transcriptional regulator [Brucella sp. 83/13] gi|306845400|ref|ZP_07477974.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] gi|264664442|gb|EEZ34703.1| transcriptional regulator [Brucella sp. 83/13] gi|306274143|gb|EFM55959.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1] Length = 143 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA++I I ++++A + + C + C C + V+ A Sbjct: 62 GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 122 ANVLDHRTLAD 132 >gi|83594728|ref|YP_428480.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577642|gb|ABC24193.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 160 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 4/136 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++++ YG R L A RI IAE I FL +IL L G+V + RG+ G Sbjct: 2 ISQKAKYGFRALFALADAEGGQLRIEDIAERQRIPRKFLEQILLDLKHHGLVVSFRGKNG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118 G L R I+ +V++ + C + DC +C + V A + Sbjct: 62 GYALRRDPKDISFTEVLRLIDGPIAPLPCLSRTAYRACEDCEGETACRMRLVFGAAYDRM 121 Query: 119 FDVLTQYSIECLVRNR 134 +VL S+ + R Sbjct: 122 LEVLETTSLGDAMNGR 137 >gi|114566820|ref|YP_753974.1| rrf2 family protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337755|gb|ABI68603.1| transcriptional regulator, BadM/Rrf2 family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 137 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++T+Y I++L+ A IAE I +FL K +Q L +AG+V T RG Sbjct: 1 MQITRQTEYAIKILIELAKSPFGELIPSKLIAEQQDIPGMFLQKTVQLLSRAGLVSTQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GGVRL AD+ITI +V+ A E + C + CP + C + +L +A A Sbjct: 61 IQGGVRLTVSADKITIANVITAIEGPLALNLCLSPG-YSCPNMTDCQVRHILGRAQAALL 119 Query: 120 DVLTQYSIECLVRNR 134 L Q SI +V + Sbjct: 120 HELQQESIADIVEGK 134 >gi|126651583|ref|ZP_01723786.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905] gi|126591532|gb|EAZ85638.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905] Length = 166 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + + I ++E +SE +L K+L L KAGIV +V G Sbjct: 1 MKYSVMVEYALHSLVYLIDVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDCPL----VGSCGLTS 109 +GG +L + + I+ DVVKA E + C FA+ +C +C + Sbjct: 61 VKGGYKLSKKPEDISFWDVVKAVEGESPIFHCKNIKANFANQTENCDSCASGTSNCTINI 120 Query: 110 VLRKALNAFFDVLTQYSIECL 130 V+ +A + L +I L Sbjct: 121 VMLEAEEQMRNYLRGKTIAWL 141 >gi|168186835|ref|ZP_02621470.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum C str. Eklund] gi|169295240|gb|EDS77373.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium botulinum C str. Eklund] Length = 131 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 3/126 (2%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ AI+ + P I IA+ ISEL+L ++ PL KA +++++RG +GG L + Sbjct: 1 MVDLAINYGETPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRGAQGGYVLNKDPKD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I++ D++ E ++ C + + C + C + +K + +V +++ + Sbjct: 61 ISVSDIINVLEGPIEISSCVDTGE--CDNMDICPTRLLWKKIKKSIDEVTESVTLQDMAN 118 Query: 133 NRSSIK 138 + +K Sbjct: 119 DYKKLK 124 >gi|307941725|ref|ZP_07657080.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4] gi|307775333|gb|EFO34539.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4] Length = 138 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ +D+ +R+L+Y P + ++ +S+ L K++ L + +VET RGR Sbjct: 1 MRLSQASDFALRILIYLG-QTREPQTVDKLTSRLRLSKSHLMKLVAQLARLDLVETTRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + I I DVV++ E V C +C + C L + A +AF D Sbjct: 60 GGGILLKANPETIRIGDVVRSFETDLGVVACLKQEPTECVFLPRCALKQTMAGAADAFLD 119 Query: 121 VLTQYSIECLV 131 L Q ++ ++ Sbjct: 120 YLNQKTLADML 130 >gi|258619946|ref|ZP_05714986.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573] gi|258627177|ref|ZP_05721965.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603] gi|262165059|ref|ZP_06032796.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223] gi|262172182|ref|ZP_06039860.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451] gi|258580479|gb|EEW05440.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603] gi|258587679|gb|EEW12388.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573] gi|261893258|gb|EEY39244.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451] gi|262024775|gb|EEY43443.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223] Length = 160 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I+I V+ A +ES +C + K DC C ++ R + D L ++ L+ Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118 Query: 133 NRSSIK 138 + I+ Sbjct: 119 DNEVIE 124 >gi|319645572|ref|ZP_07999804.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2] gi|317392458|gb|EFV73253.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2] Length = 141 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L KAG++E+ G Sbjct: 9 MKYSKATNYALHTMLFLAAGAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESASG 68 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R + I+ LD++ A E + + +C +H C + V+ A + Sbjct: 69 ANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNH------GSECVIQKVMVSAEDEME 122 Query: 120 DVLTQYSIECLVRN 133 + L Q I L + Sbjct: 123 NYLRQQKISDLAKK 136 >gi|50084582|ref|YP_046092.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter sp. ADP1] gi|49530558|emb|CAG68270.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter sp. ADP1] Length = 147 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 11 IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+ A+ + +++IA IS +L ++ L + G+V +VRG GG L R Sbjct: 1 MTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARH 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A +IT+L++++A E+ C HK +C C + ++ + D L + ++ Sbjct: 61 ATEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLAD 118 Query: 130 LVRN 133 L+ Sbjct: 119 LIAR 122 >gi|260776733|ref|ZP_05885628.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC BAA-450] gi|260607956|gb|EEX34221.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC BAA-450] Length = 155 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAHS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I I V+ A +ES +C + + DC C ++ R + D L ++ L+ Sbjct: 61 IAIGTVIAAVDESVDATKC--NGRADCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLE 124 >gi|303246358|ref|ZP_07332638.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] gi|302492421|gb|EFL52293.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio fructosovorans JJ] Length = 152 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +Y IR ++Y A+H D +IAEA I FL K+ Q L +AGI+ +G Sbjct: 1 MRLTRAGEYAIRCVLYLAMHQDRTLISRKEIAEAMEIPAQFLGKVAQSLSRAGIIAIRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + + +++L VV+A + F+ +C C C + V A Sbjct: 61 AQGGYEMAKAPEAVSLLSVVEAIDGEIFLNDCIHRPDT-CTRQTICSVHRVWETARRQLR 119 Query: 120 DVLTQYSIECLVRNRSS 136 + L ++ L R Sbjct: 120 ETLAGTTLAALAREEEQ 136 >gi|167629120|ref|YP_001679619.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] gi|167591860|gb|ABZ83608.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] Length = 147 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T++ +Y I L+ A+ + + IA+ I FL +I+ L + G V++ RG Sbjct: 1 MEITRKAEYAIAALLDLALLPPGESTLSKDIAKRQAIPSNFLPQIMAALSRHGWVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL A+ IT+ V++ E + C CP C L V +A +A Sbjct: 61 AGGGVRLAVEAETITLQAVIEVIEGPIAINRCLVGGG-SCPNQAGCPLHHVWARAQSAML 119 Query: 120 DVLTQYSIECLVRNRSSI 137 DVL + +I LV + +I Sbjct: 120 DVLAKTTIADLVTAKRAI 137 >gi|261212153|ref|ZP_05926439.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341] gi|260838761|gb|EEX65412.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341] Length = 160 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I+I V+ A +ES +C + K DC C ++ R + D L ++ L+ Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118 Query: 133 NRSSIK 138 + I+ Sbjct: 119 DNEVIE 124 >gi|300816522|ref|ZP_07096743.1| Rrf2 family protein [Escherichia coli MS 107-1] gi|300906007|ref|ZP_07123731.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|300929285|ref|ZP_07144761.1| Rrf2 family protein [Escherichia coli MS 187-1] gi|301302595|ref|ZP_07208725.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|301325941|ref|ZP_07219362.1| Rrf2 family protein [Escherichia coli MS 78-1] gi|300402174|gb|EFJ85712.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|300462778|gb|EFK26271.1| Rrf2 family protein [Escherichia coli MS 187-1] gi|300530752|gb|EFK51814.1| Rrf2 family protein [Escherichia coli MS 107-1] gi|300842120|gb|EFK69880.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|300847294|gb|EFK75054.1| Rrf2 family protein [Escherichia coli MS 78-1] gi|315255522|gb|EFU35490.1| Rrf2 family protein [Escherichia coli MS 85-1] gi|324019356|gb|EGB88575.1| Rrf2 family protein [Escherichia coli MS 117-3] Length = 125 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ IS++ + +S + KI+ L +AG V VRG+ GG+RL + A I I D Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L L KA+ +F L Y++ LV + Sbjct: 63 VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|94496618|ref|ZP_01303194.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] gi|94423978|gb|EAT09003.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] Length = 136 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + ++ A H + +A I K++ L AG++E+ RG Sbjct: 1 MRLSSFADYAVVLMSAAARHCGGARMNATTLAAETGIPLPTAQKLVSRLSGAGLLESSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL RP IT+ DVV+A E + C DC L C + + A NA Sbjct: 61 TGGGVRLSRPPATITLADVVEAVEGPIAMTACAEMGAHDCNLERDCRIRPHMNVANNAIR 120 Query: 120 DVLTQYSIECLVRN 133 L +I L R Sbjct: 121 QALAGVTIASLTRE 134 >gi|254491678|ref|ZP_05104857.1| FeS assembly SUF system regulator [Methylophaga thiooxidans DMS010] gi|224463156|gb|EEF79426.1| FeS assembly SUF system regulator [Methylophaga thiooxydans DMS010] Length = 163 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + K TDYGI ++ Y A + D + IAEA + + K+L+ L G++++ RG Sbjct: 3 RMGKLTDYGIVLMSYLAANRDVQHSAHTIAEAVKVPLPTVRKVLKSLSHGGLLKSERGVM 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L D+I++ +++ A E + EC + C C + + + NA F Sbjct: 63 GGYSLNNSPDKISVAEIITAIEGPIALTECVSDES-HCEQETHCAVQTNWTRINNAVFHA 121 Query: 122 LTQYSIECLVRNRSS 136 L + + ++ ++ Sbjct: 122 LDEVKLADMLAPQNE 136 >gi|282855787|ref|ZP_06265093.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] gi|282586419|gb|EFB91681.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] Length = 142 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +RVL+ A H + IAE ISE +L IL+ LV+ ++ +RG Sbjct: 1 MLVSTKGRYALRVLIDLAEHQSGDYVPLRAIAERQQISEKYLEAILKSLVRDKVLAGMRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + +T+ +++ TE S C A C G C + R+ + Sbjct: 61 KGGGYKLAVAPEALTVGRILRLTEPSLATVSCLAGRGEKCGRRGECRTLPMWRELDSMIL 120 Query: 120 DVLTQYSIECLVRN 133 L + L++ Sbjct: 121 AYLDGRKLADLIKK 134 >gi|251796973|ref|YP_003011704.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247544599|gb|ACT01618.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 127 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 7/133 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + + + A D P + Q+A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMAFLIAAAPDRPVGVQQLADKQGVSPTYLSKILTKLVKAGLIESASG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R + I+ LDV++A E + + EC S + C + V+ A +A Sbjct: 61 ANGGYRARGKKEDISFLDVIQAIEGTASIFECCHSENPE------CRIHRVMLSAEDAMD 114 Query: 120 DVLTQYSIECLVR 132 L + L++ Sbjct: 115 QHLRNTKLVDLMK 127 >gi|220916472|ref|YP_002491776.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954326|gb|ACL64710.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] Length = 159 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG Sbjct: 6 RISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRGP 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R I+ LDV+++ E + C C +C + SV R D Sbjct: 66 HGGYALARMPADISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERMLD 124 Query: 121 VLTQYSIECLV 131 V Q + L Sbjct: 125 VYRQAKLSELA 135 >gi|269127506|ref|YP_003300876.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312464|gb|ACY98838.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora curvata DSM 43183] Length = 154 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A+ P Q+AE+ I FL IL L ++G+V + RG Sbjct: 1 MRLSARVDYALRAAAELAVAGSTPVTAVQLAESQQIPPKFLENILGQLRRSGLVRSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +PAD+I++ D+++A + + L V + Sbjct: 61 DGGYWLAKPADEISLADIIRAIDGPLLGVRGERPEHVGYQGAAR-PLQEVWIALRASERS 119 Query: 121 VLTQYSIECLVRNR 134 +L ++ + + Sbjct: 120 ILESVTLAHIAAGK 133 >gi|196233877|ref|ZP_03132715.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] gi|196222071|gb|EDY16603.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus Ellin428] Length = 153 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 76/143 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +DY +R+L+Y H+ ++A+A IS L K+ + L KAG + RG Sbjct: 1 MQLTTHSDYALRLLIYLTSHSTRKVSTREVADAYGISLNHLTKVAKSLTKAGWLLAARGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + + ++V+ TE + VAECF + CP+ C L +L +A AFFD Sbjct: 61 GGGLTLAPHTREARVGEIVRYTEYTCDVAECFDAKANTCPITSVCRLKPLLYRAQKAFFD 120 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 VL +IE + RN + IF + Sbjct: 121 VLDTATIEDIARNPGELNAIFES 143 >gi|318059253|ref|ZP_07977976.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces sp. SA3_actG] gi|318075281|ref|ZP_07982613.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces sp. SA3_actF] Length = 151 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A H ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I++LDVV+A + A + P + GL ++ R D Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYP-GPAAGLPALWRTLEERARD 119 Query: 121 VLTQYSIECLVRNRSSIK 138 +L + S+ L R +++ Sbjct: 120 LLGEVSLASLAREAPTMR 137 >gi|126732149|ref|ZP_01747951.1| CDG1D protein [Sagittula stellata E-37] gi|126707438|gb|EBA06502.1| CDG1D protein [Sagittula stellata E-37] Length = 150 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH +K TDY +RV +Y H+ IS+IA A +S+ L K++ LV+ +++ RGR Sbjct: 1 MHFSKFTDYALRVCLYLGAHDGRVVPISEIARAHSLSQNNLMKVVNMLVEGNFLKSTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV+L R D+I + DV + E + +C + C L GSCGLT L +A F+ Sbjct: 61 AGGVQLARSPDRILVGDVARFMEGDAQMVDCSS-----CILRGSCGLTGALAEAKILFYQ 115 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L + SI + + I Sbjct: 116 TLNRNSIADAIASHPRTLPIL 136 >gi|84387613|ref|ZP_00990630.1| Predicted transcriptional regulator [Vibrio splendidus 12B01] gi|84377458|gb|EAP94324.1| Predicted transcriptional regulator [Vibrio splendidus 12B01] Length = 160 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A +ES +C DC C ++ R + L ++ L++ Sbjct: 61 IAVGTVIAAVDESVDATKCHGR--ADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLQ 124 >gi|229523430|ref|ZP_04412837.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80] gi|229339793|gb|EEO04808.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80] Length = 160 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I+I V+ A +ES +C + K DC C ++ R + D L ++ L+ Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMM 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLE 124 >gi|156740844|ref|YP_001430973.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232172|gb|ABU56955.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus castenholzii DSM 13941] Length = 146 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R L+ A + P + I I E +L +IL L +AG++E++RG Sbjct: 1 MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRAGLIESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL RP QIT+LD + A E + + + V A Sbjct: 61 PQGGHRLARPPSQITVLDALTALEGPLLALDSGRDALTPTEPMDRDLVREVWDGAREILE 120 Query: 120 DVLTQYSIECLVRNRSS 136 L ++E L + ++ Sbjct: 121 RYLASVTLEDLCQRKAQ 137 >gi|29832495|ref|NP_827129.1| hypothetical protein SAV_5952 [Streptomyces avermitilis MA-4680] gi|29609614|dbj|BAC73664.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 166 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ D ++A + K++ L G++ RGR Sbjct: 9 MRLLRSTDLALRVLMRLAVTGDSSPTTREVAADMDVPYTHAAKVVAELQHLGLITARRGR 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ VV+A E V +C CPL +C L LR+A AFF Sbjct: 69 GGGLALMEAGRTASVGAVVRAFEGDGDVVDC--EGSTPCPLNSACRLRGALRRAQEAFFA 126 Query: 121 VLTQYSIECLVRNRSS 136 L +++ +V + Sbjct: 127 SLDPLTVQDMVAAPTG 142 >gi|237728822|ref|ZP_04559303.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226909444|gb|EEH95362.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 167 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI LM + +IAE + +L KI L KAG+V ++ G+ Sbjct: 5 SSGVEYGIHSLMCMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG +L +PA+ IT+LDVV A + + EC F H + G CG+ SV+ Sbjct: 65 GGFQLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFEEHPPEWACEGICGVRSVMD 124 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L Q++I L R Sbjct: 125 MAQQRMEEALGQHTILDLARK 145 >gi|256545144|ref|ZP_05472510.1| iron-sulfur cluster assembly transcription factor IscR [Anaerococcus vaginalis ATCC 51170] gi|256399185|gb|EEU12796.1| iron-sulfur cluster assembly transcription factor IscR [Anaerococcus vaginalis ATCC 51170] Length = 134 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S I+ A + E +L ++++ L + +V + RG Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNALKLPENYLEQLIRILKRNNLVISARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R + +IT+ DV++ E +EC A + +C C V K +A Sbjct: 61 AKGGYKLSRNSSEITVGDVLRVLEGEMTSSECVAD-RNNC-NNSECEAYYVFAKIDDAIN 118 Query: 120 DVLTQYSIECLVRNR 134 + +I+ +V + Sbjct: 119 KAVNSITIKDMVNEK 133 >gi|229505639|ref|ZP_04395149.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286] gi|229510689|ref|ZP_04400168.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33] gi|229513114|ref|ZP_04402580.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21] gi|229517811|ref|ZP_04407255.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9] gi|229525393|ref|ZP_04414798.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis VL426] gi|229530123|ref|ZP_04419513.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)] gi|229608657|ref|YP_002879305.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236] gi|229333897|gb|EEN99383.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)] gi|229338974|gb|EEO03991.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis VL426] gi|229344526|gb|EEO09500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9] gi|229350007|gb|EEO14961.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21] gi|229350654|gb|EEO15595.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33] gi|229357862|gb|EEO22779.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286] gi|229371312|gb|ACQ61735.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236] Length = 160 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL + Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I+I V+ A +ES +C + K DC C ++ R + D L ++ L+ Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMM 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLE 124 >gi|220922635|ref|YP_002497937.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947242|gb|ACL57634.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium nodulans ORS 2060] Length = 150 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ L++ A + ++++A A I + FL IL L AGIV + +G Sbjct: 2 LTNKGKYGLKALVHLAGLPPGARIGVAEVAAANNIPKKFLDAILGELRNAGIVHSRKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RP ++I + ++ + C + DC +C + V+ + N+ Sbjct: 62 GGYALARPPEEIRVGHAIRVLDGPLAPIPCASRTGYRPCEDCADEAACAVRLVMLEVRNS 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL ++ + R+R + Sbjct: 122 IAGVLDTLTLAQM-RDRPA 139 >gi|254702363|ref|ZP_05164191.1| Rrf2 family transcriptional regulator protein [Brucella suis bv. 3 str. 686] gi|260568733|ref|ZP_05839202.1| RRF2 family protein [Brucella suis bv. 4 str. 40] gi|261752927|ref|ZP_05996636.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|54112367|gb|AAN34279.2| RrF2 family protein [Brucella suis 1330] gi|260155398|gb|EEW90479.1| RRF2 family protein [Brucella suis bv. 4 str. 40] gi|261742680|gb|EEY30606.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 143 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C C + V+ A Sbjct: 62 GGFCLTHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 122 ANVLDHRTLAD 132 >gi|291085972|ref|ZP_06571283.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220] gi|291069042|gb|EFE07151.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220] Length = 117 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 IS++ E +S + KI+ L +AG V +RG+ GG+RL +PA I I DVV+ E Sbjct: 2 TSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPAKAIGIGDVVRELE- 60 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 + C + C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 61 PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 114 >gi|330990683|ref|ZP_08314639.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329762123|gb|EGG78611.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 135 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT RTD RVL++ A H +S I+E +S L K+++ L GI+ R Sbjct: 1 MRLTLRTDLAFRVLIHLARHARAQDRVTVSHISERHNLSHNHLVKVVKELCHHGILVGTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GR GG+RL R I I +V+ E E + C + C L SC L ++R+A +A Sbjct: 61 GRNGGIRLARHPKDINIGHIVRLMETEGEVMTGCAPLYGRPCVLADSCRLRHLIRQATDA 120 Query: 118 FFDVLTQYSIECLV 131 F +L S++ L+ Sbjct: 121 FMVILDGMSVQDLL 134 >gi|90406923|ref|ZP_01215114.1| Rrf2 family protein [Psychromonas sp. CNPT3] gi|90311965|gb|EAS40059.1| Rrf2 family protein [Psychromonas sp. CNPT3] Length = 158 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+ + P ++ I+ IS +L ++ L K +V +VRG Sbjct: 1 MKLTSKGRYAVTAMLDVALKEHNGPVPLADISMRQGISLSYLEQLFSKLRKNELVCSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 GG +L + +I++ ++ A ES V +C S K C G C S+ + Sbjct: 61 PGGGYKLGKLRSEISVAMIIAAVNESVDVRKC--SGKEGCQEHGVKCLTHSLWEQLSLRI 118 Query: 119 FDVLTQYSIECLVRNRS 135 L ++E L+ + Sbjct: 119 STFLDGITLEELMSSEH 135 >gi|323136514|ref|ZP_08071596.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] gi|322398588|gb|EFY01108.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] Length = 157 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + ++ IA A I + FL IL L AG V + +G+ Sbjct: 2 LTKKAKYGLKAMVHLAGVEPGQTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L R +I++ ++V+A + +C + DC C + V+ +A +A Sbjct: 62 GGYMLARLPSEISVGNLVRALDGPLAPIQCASKTIYRRCDDCVDEKHCSVRLVMMEARDA 121 Query: 118 FFDVLTQYSIE 128 VL S+E Sbjct: 122 IAKVLDNTSLE 132 >gi|254293805|ref|YP_003059828.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hirschia baltica ATCC 49814] gi|254042336|gb|ACT59131.1| transcriptional regulator, BadM/Rrf2 family [Hirschia baltica ATCC 49814] Length = 147 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L R Y + L+ A ++ D P +S IAE IS +L ++ L KA IV++VRG Sbjct: 1 MKLGSRGRYAVMALVDLASNDMDGPVSLSDIAERQKISLSYLEQLFAKLRKANIVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118 GG L A + + ++ A +E C C + C + R+ Sbjct: 61 PGGGYLLLNDASKTMVSQIIVAVDEPIQTTRCGEMGGKPCTGRLERCATHDLWRELRLHI 120 Query: 119 FDVLTQYSIECLVRNR 134 L+ SI ++ Sbjct: 121 IQFLSGVSISDVLSGN 136 >gi|118602585|ref|YP_903800.1| BadM/Rrf2 family transcriptional regulator [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567524|gb|ABL02329.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 139 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A ++ P + I++ IS +L ++ L +A +V++VRG Sbjct: 1 MQLTTKGRYAVIAMLDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L I + +++A +E+ + C C C + + Sbjct: 61 PGGGYLLDAKVSDINLTQIIEAVDENIDLRRCKGIKG--CNNGRQCISHQLWCEVSQQIR 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L +++ ++ + SS K + Sbjct: 119 TFLNGKTLQMVIDDHSSNKGV 139 >gi|309789575|ref|ZP_07684156.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] gi|308228311|gb|EFO81958.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] Length = 146 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DYG+R L A + P + +IA I +L ++L + +AG++E++RG Sbjct: 1 MRISSKGDYGLRALFDLAQRYGEGPVQSEEIAIRQGIPVNYLNQLLITMRRAGLIESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+ D + E AE + + +V Sbjct: 61 PQGGHMLARSPETITLRDAIIVLEGPLLPAEASREDLVPTEPDDDTLIDAVWDDLRGQIE 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 +L Q +++ L + + + Sbjct: 121 QILAQITLDDLCQRKRQQR 139 >gi|210631991|ref|ZP_03297156.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279] gi|210159793|gb|EEA90764.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279] Length = 176 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L A D + AE+ + F I LV+AGI+E++RG Sbjct: 16 MDISRKTDYALRMLSMLAEGEDCLLSVRTAAESVDVPYSFARSIQHGLVQAGIIESLRGV 75 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL +TI +V+A + + +C A + CP + C + A Sbjct: 76 RGGMRLKVDPKDVTIRQIVEAVQGPLVMNDCTAENGA-CPRMDGCCYHPLWVGAQELLRS 134 Query: 121 VLTQYSIECLVRNRS 135 L +++ +V NR Sbjct: 135 YLDSITLDDIVNNRR 149 >gi|163814492|ref|ZP_02205881.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759] gi|158450127|gb|EDP27122.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759] Length = 136 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +RV+ AI++D + +I + +S+ +L I++ L KA ++E G Sbjct: 1 MVISSKGEYALRVMADLAINHDGRFIPLKEIVQKEELSQKYLESIMRMLSKANLIEAASG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + ++ T+ ++++ TE C + I C C + + Sbjct: 61 HGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSTITCDRSKQCYTLPIWQGLAELIQ 120 Query: 120 DVLTQYSIECLVRN 133 + ++ + RN Sbjct: 121 EYFQGKTLADIARN 134 >gi|157738497|ref|YP_001491181.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri RM4018] gi|315635366|ref|ZP_07890633.1| transcriptional regulator superfamily protein [Arcobacter butzleri JV22] gi|157700351|gb|ABV68511.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri RM4018] gi|315480351|gb|EFU71017.1| transcriptional regulator superfamily protein [Arcobacter butzleri JV22] Length = 152 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++K+TDY +R L A D I +++E+ + FL I+ + +AG V+++ GR Sbjct: 1 MKVSKKTDYALRALFAIA-EADNLISIRELSESVDVPRRFLENIMLEMNRAGWVKSIPGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +D+IT+ +V++ E + C + S+ C G C V N Sbjct: 60 YGGYVLAKGSDEITLGEVIRYFEGMIAMISCVSVSNYEPCSQEGKCYFRRVFLNIRNLTA 119 Query: 120 DVLTQYSIE 128 +L + +I Sbjct: 120 QILDKTTIA 128 >gi|15896762|ref|NP_350111.1| hypothetical protein CA_C3525 [Clostridium acetobutylicum ATCC 824] gi|15026619|gb|AAK81451.1|AE007849_5 Uncharacterized conserved protein, YjeB/RRF2 family [Clostridium acetobutylicum ATCC 824] gi|325510933|gb|ADZ22569.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 168 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 19/145 (13%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y I +A ISE +L K+ L K+GI++++ G Sbjct: 1 MKFSVGVEYALHCLLYMVNAEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105 +GG L R A++IT DVV+A E S +C CP C Sbjct: 61 VKGGYALARSAEEITFWDVVEALEGSESFFQCAEIRQNNILLDKNNLPDTHTKCP----C 116 Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130 + V+ +A + L ++ L Sbjct: 117 LIKVVMVEAEDEMRKYLRNKTLAWL 141 >gi|296116952|ref|ZP_06835554.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976518|gb|EFG83294.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 159 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y IH D I +IA+A ISE L KI+ L + G VET+RGR Sbjct: 10 MRLTLHTDYALRTLIYLGIHTDRLTSIHEIAQAYGISENHLIKIIHRLGRGGFVETLRGR 69 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117 RGG+RL RPA I I DVV+ TEE + C + C LVG C L +L +AL + Sbjct: 70 RGGLRLGRPAHDILIGDVVRYTEEDLGLVSCMQAPAEGVRPCLLVGGCSLRGILNEALGS 129 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143 F VL Y++E + +++ +A Sbjct: 130 FMSVLDSYTLEQAITAHE--RRLLDA 153 >gi|297559632|ref|YP_003678606.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844080|gb|ADH66100.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 154 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A+ ++ P Q+A A I FL IL L +AG+V + RG Sbjct: 1 MRLSARVDYALRAAAELAVADEGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA +I++ D+++A + +D L V + Sbjct: 61 VGGYWLARPAGEISLADIIRAVDGPLANVRGERPEHVDYDGAAR-SLQQVWIALRASERA 119 Query: 121 VLTQYSIECLVRNR 134 +L +++ LV N Sbjct: 120 ILEGVNLQHLVTNE 133 >gi|330830081|ref|YP_004393033.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas veronii B565] gi|328805217|gb|AEB50416.1| Iron-sulfur cluster assembly transcription factor IscR [Aeromonas veronii B565] Length = 154 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG GG RL + Sbjct: 1 MLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRGPGGGYRLGLAPGE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I++ V+ A +ES +C K C C S+ R L ++ LVR Sbjct: 61 ISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERISSFLGDITLAELVR 118 Query: 133 NRSSIKKIFN 142 ++ +++I Sbjct: 119 -QADVRRIAG 127 >gi|197334970|ref|YP_002155373.1| Rrf2 family protein [Vibrio fischeri MJ11] gi|197316460|gb|ACH65907.1| Rrf2 family protein [Vibrio fischeri MJ11] Length = 155 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG GG RL A+Q Sbjct: 1 MLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRGPGGGYRLGLKAEQ 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A +ES +C K C C ++ R + L ++ L++ Sbjct: 61 IAVGMVISAVDESVDATKCHG--KEGCQGGTRCLTHTLWRDLSSRISTFLDGITLGELMQ 118 Query: 133 NRS 135 + Sbjct: 119 DNE 121 >gi|86145582|ref|ZP_01063912.1| Predicted transcriptional regulator [Vibrio sp. MED222] gi|85836553|gb|EAQ54679.1| Predicted transcriptional regulator [Vibrio sp. MED222] Length = 160 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A +ES +C DC C ++ R + L ++ L++ Sbjct: 61 IAVGTVIAAVDESVDATKCHGR--ADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLE 124 >gi|239931665|ref|ZP_04688618.1| hypothetical protein SghaA1_25822 [Streptomyces ghanaensis ATCC 14672] gi|291440032|ref|ZP_06579422.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291342927|gb|EFE69883.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 151 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ +A A + K++ L G++ RGR Sbjct: 1 MRLLRSTDLALRVLMRLAVAGGSQPTTRDVAAAMDVPYTHAAKVVADLRHRGLLTARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L ++ +V+A E V +C S CPL C L LR+A AFF Sbjct: 61 GGGLTLTEKGRGASVGALVRAFEGEGDVVDCEGGSATAPCPLRSDCRLRGALRRAQEAFF 120 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ L + + Sbjct: 121 ASLDPITVADLAADPTG 137 >gi|163848758|ref|YP_001636802.1| rrf2 family transcriptional regulator [Chloroflexus aurantiacus J-10-fl] gi|222526707|ref|YP_002571178.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670047|gb|ABY36413.1| transcriptional regulator, Rrf2 family [Chloroflexus aurantiacus J-10-fl] gi|222450586|gb|ACM54852.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus sp. Y-400-fl] Length = 146 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DYG+R L A + P + IA I +L ++L L +AG+VE++RG Sbjct: 1 MRISSKGDYGLRALFDLAQRYGEGPIQSEAIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+L+V+ E AE + + + Sbjct: 61 PQGGHLLARSPESITLLEVLTVLEGPILPAEGGRDDLQPTEPSDRAVIDEIWSELRTTIE 120 Query: 120 DVLTQYSIECLVRNRSS 136 L +++ L + + S Sbjct: 121 RRLAAITLDDLCQRKRS 137 >gi|87198175|ref|YP_495432.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133856|gb|ABD24598.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium aromaticivorans DSM 12444] Length = 167 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD G+R+L+ A + + +S + K+ Q LV G + RGR Sbjct: 19 MQLTQHTDLGLRLLIVLA-RKGAAVSLPAFSAEQGLSYHHVAKVAQALVHEGFATSQRGR 77 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L R A I + DVV+A E +A+C C L CGL+ VL +AL AF Sbjct: 78 SGGIALAREATNIRVGDVVRALERGMRLADCGG-----CALRADCGLSGVLAEALEAFMA 132 Query: 121 VLTQYSIECLVRN 133 VL +Y++ + R Sbjct: 133 VLDRYTLADVSRE 145 >gi|159899482|ref|YP_001545729.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892521|gb|ABX05601.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon aurantiacus ATCC 23779] Length = 142 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + +YG+R L A H + + +IAE ISE +L ++L L KAG++ +VRG Sbjct: 1 MRLSTKGEYGVRALFDLAQHYGEGLVQSHEIAERQAISENYLNQLLIALRKAGLITSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L RP I++LD + E + L V + Sbjct: 61 PQGGHQLARPPQAISLLDAILVLEGPLLPT----PEGASLDTFDAGLLGEVWGELRAVIE 116 Query: 120 DVLTQYSIECLVRNRSS 136 L++ +I L + + Sbjct: 117 GHLSEMTIADLCQRKHQ 133 >gi|332291390|ref|YP_004429999.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter diaphorus 4H-3-7-5] gi|332169476|gb|AEE18731.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter diaphorus 4H-3-7-5] Length = 141 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+++T YGI+ L Y A D +I IAE+ IS+ FL I+ L KAG V + +G+ Sbjct: 2 LSRKTKYGIKALTYIAREQREDALVQIGTIAESENISQKFLESIMLTLKKAGFVSSRKGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG +L R I +++V++ E + C + DC +C + S++ + + Sbjct: 62 GGGYQLRREPKDIKMVEVMRVLEGPVAMLPCVSLNYYERCADCKDEDACAVHSLMIQIRD 121 Query: 117 AFFDVLTQYSIECLVRNRSS 136 VL + ++ LV SS Sbjct: 122 NTLLVLEKNTLADLVAAASS 141 >gi|258516089|ref|YP_003192311.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] gi|257779794|gb|ACV63688.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum acetoxidans DSM 771] Length = 143 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + TDY R + Y ++ IAE I FL KI L+KAGIVE+ RG Sbjct: 1 MKINQATDYAFRAVFYLSLLPRGQVVEAKLIAEDENIPTRFLLKIFPQLIKAGIVESQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 RGG L + +IT+ DV++A E V C + + C + L Sbjct: 61 NRGGYSLAKKPAEITLKDVLEAVEGPVMVNRCLLSPEGCNKNHTAICPIHQALLNIQQTM 120 Query: 119 FDVLTQYSIECLVRN-RSSIKKI 140 L +Y E L N + + K+ Sbjct: 121 NTELEKYDFETLKNNYKQHLSKL 143 >gi|253996434|ref|YP_003048498.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983113|gb|ACT47971.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis JLW8] Length = 146 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +TK TD +RVLMY D I++IA+ + L K++ L K V RG Sbjct: 1 MQITKFTDLSLRVLMYLTQEVGDSMVTINEIAQQFDVPRNHLIKVVARLNKLKWVSATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL ++ + +V++ E + C + C L G C L +L L +F+ Sbjct: 61 RSGGLRLGIQPSELKLGNVLRELENKTSLINCS---EPPCVLSGQCNLKEILDHGLQSFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 + + +Y+++ +V ++ Sbjct: 118 EEMNKYTLQSIVDQKTQ 134 >gi|262395130|ref|YP_003286984.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25] gi|262338724|gb|ACY52519.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25] Length = 158 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL Sbjct: 1 MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAE 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A I I V+ A +ES +C K DC C ++ R + D L ++ Sbjct: 61 AHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGE 118 Query: 130 LVRNRSSIK 138 L+ + ++ Sbjct: 119 LMTDNEVLE 127 >gi|330990437|ref|ZP_08314396.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329762474|gb|EGG78959.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 207 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 43/94 (45%), Positives = 58/94 (61%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y +H D I ++AEA ISE L K++ L + G V+T+RGR Sbjct: 1 MRLTLYTDYALRTLLYLGVHADRRVSIREVAEAYGISENHLVKVIHHLGRGGFVDTLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94 GG+ L RPADQI + DVV+ TEE + C + Sbjct: 61 GGGLMLARPADQINVGDVVRHTEEDMALVGCMSP 94 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + +C L +C L VL +AL AF VL ++ L+ +K+ Sbjct: 153 SGSAGECLLANACHLRGVLGEALGAFMTVLDARTLADLLTPYE--RKVLT 200 >gi|327539861|gb|EGF26464.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47] Length = 141 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LMY A + ++ +A IS + K++ L + G V ++RG Sbjct: 1 MRLTTQTDYALRTLMYLATR-ESRANVAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + +T+ ++ E + C A C + C LT VL A D Sbjct: 60 GGGIELAVRPEDVTVGQIIATVESDMHLLPCVAGDHG-CVIHSFCKLTGVLANAERIQMD 118 Query: 121 VLTQYSIECLVRNRSSIKK 139 L ++ ++ R + + Sbjct: 119 YLNSVTLAEVIPTRKQLDR 137 >gi|269839251|ref|YP_003323943.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] gi|269790981|gb|ACZ43121.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] Length = 153 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T R DY +R + A P + QI+EA I FL IL L +AG+V T RG+ Sbjct: 1 MHITARADYALRAAIEMAASWPQPLKGEQISEAQDIPIKFLESILLDLKRAGLVRTQRGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R +I++ D+++A E + +I + L V Sbjct: 61 AGGYWLGREPAEISLADIIRAVEGPLANVRGMSPEEITYKGRAA-TLRDVWVALRANMRA 119 Query: 121 VLTQYSIECLVRNR--SSIKKIFN 142 VL ++ +VR + + Sbjct: 120 VLETTTLAHMVRGELPEQLHPLLQ 143 >gi|210608482|ref|ZP_03287858.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787] gi|210153058|gb|EEA84064.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787] Length = 142 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + +++ A+H+ ++ R+ IA +SE +L +I++ + ++ + R Sbjct: 1 MRISTKGTYALEIIVDLAMHSSEEHLERLKNIAARRGLSEKYLERIVKAMKNENLILSTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG RL R + IT+LDV+++ E EC C V Sbjct: 61 GAMGGYRLARRPEDITVLDVLRSVEGELAPVECLTKETNCGIACEDCLTRGVWADMWREI 120 Query: 119 FDVLTQYSIECLVRN 133 V S+ + + Sbjct: 121 LGVTENVSVADITKE 135 >gi|291447666|ref|ZP_06587056.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291350613|gb|EFE77517.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 156 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ ++A + K++ L G+++ RG Sbjct: 9 MRLTRFTDVALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRG 68 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L +I +V+ E V EC CPL +C L LR A +AF+ Sbjct: 69 RGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFY 126 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV + + Sbjct: 127 AALDPITVADLVASPTG 143 >gi|312115350|ref|YP_004012946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311220479|gb|ADP71847.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 152 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ + + A + ++S+IAEA I + FL +I L KAG V + +G+ Sbjct: 2 LTAKGKYGLKAMTHLARLAPGEIAQVSEIAEANSIPKKFLDQIFSELRKAGFVFSKKGKA 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + A I + D+V+ + C + DC G C + +++ + NA Sbjct: 62 GGYALAKEASSINVGDIVRVLDGPLAPIPCASVTAYRACDDC-DCGECEVRAIMVEVRNA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 VL ++ +S+ +++ Sbjct: 121 ISVVLDNRTLAQFAGLKSTRRRV 143 >gi|32476776|ref|NP_869770.1| hypothetical protein RB11077 [Rhodopirellula baltica SH 1] gi|32447322|emb|CAD77148.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 155 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +TDY +R LMY A + ++ +A IS + K++ L + G V ++RG Sbjct: 15 MRLTTQTDYALRTLMYLATR-ESRANVAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 73 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + +T+ ++ E + C A C + C LT VL A D Sbjct: 74 GGGIELAVRPEDVTVGQIIATVESDMHLLPCVAGDHG-CVIHSFCKLTGVLANAERIQMD 132 Query: 121 VLTQYSIECLVRNRSSIKK 139 L ++ ++ R + + Sbjct: 133 YLNSVTLAEVIPTRKQLDR 151 >gi|218885727|ref|YP_002435048.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756681|gb|ACL07580.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 189 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ Y R+L+ A+H D P S++AE IS F+ KI++ L AG+V +VR Sbjct: 1 MRISSTVHYASRLLVNLALHCPQDGPLSASELAEHTGISVKFIEKIIRQLRTAGMVRSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L D +T+ DV++ E C DC C + A A Sbjct: 61 GAAGGHVLTMNPDDVTLGDVLRVVEGGVQPPNCCVG--ADCDDTP-CRCKAAWTSAAKAL 117 Query: 119 FDVLTQYSIECLVR 132 + L Q+++ ++ Sbjct: 118 EETLDQFTLTDIMH 131 >gi|15838078|ref|NP_298766.1| hypothetical protein XF1477 [Xylella fastidiosa 9a5c] gi|9106501|gb|AAF84286.1|AE003977_9 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 153 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A H +++AE + + KIL+PL +AG+VE RG Sbjct: 3 RVTKLTDYASVVLTVLAAHPGAVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGAY 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL P +IT++ +V+A E + EC H C + CG+ S + Sbjct: 63 GGYRLAHPPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRSNWQLINTLIAQA 121 Query: 122 LTQYSIECLVR 132 L ++ ++ Sbjct: 122 LRSITLAQMLA 132 >gi|239944195|ref|ZP_04696132.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 148 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ ++A + K++ L G+++ RG Sbjct: 1 MRLTRFTDVALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L +I +V+ E V EC CPL +C L LR A +AF+ Sbjct: 61 RGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFY 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV + + Sbjct: 119 AALDPITVADLVASPTG 135 >gi|86159005|ref|YP_465790.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775516|gb|ABC82353.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-C] Length = 159 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG Sbjct: 6 RISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRGP 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R I+ LDV+++ E + C C +C + SV R D Sbjct: 66 HGGYALARMPVDISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERMLD 124 Query: 121 VLTQYSIECLV 131 V Q + L Sbjct: 125 VYRQAKLSELA 135 >gi|325479354|gb|EGC82450.1| putative HTH-type transcriptional regulator CymR [Anaerococcus prevotii ACS-065-V-Col13] Length = 133 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 69/135 (51%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S+++E +SE +L ++++ L G++++ RG Sbjct: 1 MKLSTRGRYGLRAMCYLASNEDRGYISVSEMSEKLNLSENYLEQLIRLLKNDGLIKSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG ++ + D+I++ +V++ E + +++C + C C V + Sbjct: 61 PKGGYKITKDLDEISVGEVLRVLEGNITMSDCVSGEHF-CD--DKCDAYYVFNRIDQVIN 117 Query: 120 DVLTQYSIECLVRNR 134 D + S++ ++ Sbjct: 118 DAVDSISLKNMINQE 132 >gi|54025656|ref|YP_119898.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017164|dbj|BAD58534.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 152 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L++ TD G+R +M A+ + + +A SE ++ K + L + G+V++ R Sbjct: 1 MQLSRFTDLGLRAMMRLAVGGAAEERVTVRLVARQVNASEHYVAKAVTKLAELGLVDSHR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L T+ +V+ E + V +C H CPL +C L +L A F Sbjct: 61 GRTGGIFLTDRGRAATVGQIVRGLEGAAEVVDCAGEH--PCPLAAACRLRRMLADAQEMF 118 Query: 119 FDVLTQYSIECLVRNRS 135 + L +Y++ LV R+ Sbjct: 119 YRELDKYTLRDLVDERT 135 >gi|182436058|ref|YP_001823777.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464574|dbj|BAG19094.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 156 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ + P ++A + K++ L G+++ RG Sbjct: 9 MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 68 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L I +V+ E V EC CPL +C L LR A AF+ Sbjct: 69 RGGGLTLTPAGRSTPIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 126 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV + + Sbjct: 127 AALDPITVTDLVASPTG 143 >gi|257093906|ref|YP_003167547.1| BadM/Rrf2 family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046430|gb|ACV35618.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 146 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T+ TDY +R L+Y D I +IAE +S L K++ L++AG VE +RG+ Sbjct: 1 MYITQHTDYALRALIYLGTSGDRLVTIQEIAERFGVSRNHLMKVVNALIRAGFVEGLRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R +I + VV+ E + ECF S C L C L L +AL AF Sbjct: 61 GGGLRLARAPGEIIVGAVVRQMEPGMCLVECFGSG-CQCILDPDCKLKVGLARALAAFLQ 119 Query: 121 VLTQYSIECLV-RNRSSIKKIF 141 VL + ++ LV ++ SI K Sbjct: 120 VLDEMTLADLVGKSERSILKFL 141 >gi|255327681|ref|ZP_05368747.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC 25296] gi|255295355|gb|EET74706.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC 25296] Length = 156 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +RVLM A+ +IAE + K + LV G +++ RG Sbjct: 1 MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGV L T+ V++ATE + EC CPL C L +VL KA AF+ Sbjct: 61 RSGGVMLSDAGRSATVGTVLRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 119 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 + I L + +F Sbjct: 120 ASVDSVIISELTAGARPVGPVF 141 >gi|210608481|ref|ZP_03287857.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787] gi|210153057|gb|EEA84063.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787] Length = 144 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A H N P ++ IA+ +S +L ++ L KAGIV++++G Sbjct: 1 MKISTKGRYGLRALVDLAGHDNGEPIALASIAQRQKLSLNYLEQVFSVLRKAGIVKSLKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + AD IT+ +V++ E F + + +A K + + V + Sbjct: 61 VNGGYRLAKKADDITVKEVLEVLEGKFSIVDEYAQEKGTDDVQEAIKT-LVWDQINTRVN 119 Query: 120 DVLTQYSIECLVRN 133 +L + +++ L+ + Sbjct: 120 QLLEEKTLKQLMAS 133 >gi|311899855|dbj|BAJ32263.1| putative transcriptional regulator NsrR [Kitasatospora setae KM-6054] Length = 167 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +R+ M A + D ++AE + K++ L G+VE RG Sbjct: 1 MRLTKSTDIALRIAMRLAVLDEDQTPTTREVAEVVGVPYNHAAKVVSRLQHLGVVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ++ +V+ E V C CPL SC L LR+A AFF Sbjct: 61 RGGGLALTAAGRTGSLGRIVRELEGVGDVVGC--EDDPPCPLRHSCRLRGALRRAQEAFF 118 Query: 120 DVLTQYSIECLVRN 133 L +++ LV + Sbjct: 119 ATLDPLTVDDLVAD 132 >gi|325831666|ref|ZP_08164883.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] gi|325486537|gb|EGC88986.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp. HGA1] Length = 179 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +R+++ A + + +++E IS +L ++ +PLV+AG++ +VRG+ Sbjct: 38 VSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGKG 97 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + I DV++A E S C + CP G C Sbjct: 98 GGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVIER 157 Query: 121 VLTQYSIECLV 131 + ++ L Sbjct: 158 YVDGVTLADLA 168 >gi|255523578|ref|ZP_05390546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296186461|ref|ZP_06854864.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] gi|255512835|gb|EET89107.1| transcriptional regulator, BadM/Rrf2 family [Clostridium carboxidivorans P7] gi|296048908|gb|EFG88339.1| Rrf2 family protein (putative transcriptional regulator) [Clostridium carboxidivorans P7] Length = 167 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 22/161 (13%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y I L+Y I +A ISE +L K+ L K+GI++++ G Sbjct: 1 MKFSVGVEYAIHCLLYMVNSEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105 +GG L R A+ IT ++V+A E S +C CP C Sbjct: 61 VKGGYALARNAEDITFWNIVEAVEGSEPFFQCAEIRQNNILLDKDNLPDTHTKCP----C 116 Query: 106 GLTSVLRKALNAFFDVLTQYSIECL---VRNRSSIKKIFNA 143 + V+ +A + L+ ++ L V N+ K++ NA Sbjct: 117 LIKVVMLEAEDEMRKYLSNKTLAWLYDEVYNKKLPKEVKNA 157 >gi|126641679|ref|YP_001084663.1| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978] gi|169633489|ref|YP_001707225.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii SDF] gi|169796093|ref|YP_001713886.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii AYE] gi|169149020|emb|CAM86897.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii AYE] gi|169152281|emb|CAP01191.1| repressor of the iscRSUA operon, involved in assembly of Fe-S clusters [Acinetobacter baumannii] Length = 147 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+ A+ + +++IA IS +L ++ L + G+V +VRG GG L R Sbjct: 1 MTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARN 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 AD+IT+L++++A E+ C HK +C C + ++ + D L + ++ Sbjct: 61 ADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLAN 118 Query: 130 LV 131 L+ Sbjct: 119 LI 120 >gi|260773391|ref|ZP_05882307.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14] gi|260612530|gb|EEX37733.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14] Length = 160 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+++ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALNSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAST 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I+I V+ A +ES +C K DC C ++ + D L ++ L+ Sbjct: 61 ISIGTVIAAVDESVDATKCHG--KGDCQGGTRCLTHTLWCDLSSRISDFLNNITLGELMV 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLQ 124 >gi|285017824|ref|YP_003375535.1| transcriptional regulator, rrf2 family transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283473042|emb|CBA15547.1| hypothetical transcriptional regulator, rrf2 family transcription regulator protein [Xanthomonas albilineans] Length = 152 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLNVLAARPTEVLSATELAEQAGLEPPTVSKLLKPLAQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA+ IT++++V+A E + EC + H C + +CG+ S R + D Sbjct: 63 GGYRLARPANAITLIEIVEAMEGPLAITEC-SHHGNQCNITHTCGVRSNWRLINDVIADA 121 Query: 122 LTQYSIECLVR 132 L ++ ++R Sbjct: 122 LGGVTLAQMLR 132 >gi|148558060|ref|YP_001257984.1| RrF2 family protein [Brucella ovis ATCC 25840] gi|148369345|gb|ABQ62217.1| RrF2 family protein [Brucella ovis ATCC 25840] Length = 143 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVLASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C C + V+ A Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 122 ANVLDHRTLAD 132 >gi|297623328|ref|YP_003704762.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164508|gb|ADI14219.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix DSM 17093] Length = 146 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT++ Y ++ L++ A + P I+ IAE+ IS+ FL IL L GI+++ +GR Sbjct: 4 LTQKAKYALKALVFLAKAYGKGPVLIANIAESEGISQKFLELILLELKNHGILQSKKGRG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RP ++I + V++ E + C + S +C +C + +V+ + A Sbjct: 64 GGYWLNRPPEEIYLGHVIRIFEGALAPLPCASKRYYSRCEECADEATCEVRAVMLEVKKA 123 Query: 118 FFDVLTQYSIEC 129 VL S++ Sbjct: 124 TLGVLDTTSLKD 135 >gi|114319885|ref|YP_741568.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226279|gb|ABI56078.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola ehrlichii MLHE-1] Length = 153 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 62/137 (45%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + TDYGI +L A + ++A+ + + + KIL+ L +AGI+ + RG + Sbjct: 3 RINRETDYGIGILTAMARAPEQRFSTVRLADQQGLPQPMVAKILKNLARAGILVSYRGAK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RPA QI++ +++ A E EC C +C ++ + Sbjct: 63 GGYGLARPARQISVAEIITALEGPIAFTECVEEGVDACQYGDACTTSANWWRISQVVQHA 122 Query: 122 LTQYSIECLVRNRSSIK 138 L S++ + ++ Sbjct: 123 LGSISLKDMSEPVVPLR 139 >gi|313672577|ref|YP_004050688.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939333|gb|ADR18525.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 132 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +TK +DY +RV+ + A + +++E C + + FL KILQ LVK+GI+E+ RG Sbjct: 1 MKITKASDYALRVVGFFATAEKNRYYMRNELSEICNVPDSFLGKILQNLVKSGILESERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +RGG ++ + +++T+ D++++ E + EC C + G+C + ++L + Sbjct: 61 KRGGFKMSKNPEEVTVYDIIRSVEGDVVINECLVEGNT-CKISGNCKIHNILDQVRCNLI 119 Query: 120 DVLTQYSIECLVR 132 + L ++SI LVR Sbjct: 120 NELKRFSISDLVR 132 >gi|239618077|ref|YP_002941399.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] gi|239506908|gb|ACR80395.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] Length = 159 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M T ++ Y +R L A+ + +++IAE I FL KI L AG V+ Sbjct: 1 MGFTVKSSYALRALYELALAAESGNPKLSLAKIAERDMIPRDFLEKIFAELRDAGFVKAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG L +PA++I + DV+ ++ C +C + +C + V + N+ Sbjct: 61 RGRYGGYVLAKPANEIYLRDVILKLDKPMNSYVCV-RENTECDIDPNCTVKYVWFRLYNS 119 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 L + ++ L+ +KK Sbjct: 120 MMRELGKMTLADLIEIGEKLKK 141 >gi|300920798|ref|ZP_07137199.1| Rrf2 family protein [Escherichia coli MS 115-1] gi|300412221|gb|EFJ95531.1| Rrf2 family protein [Escherichia coli MS 115-1] Length = 125 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ IS++ + +S + KI+ L +AG V VRG+ GG+RL + A I I D Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+ E + C + C + +C L L KA+ +F L Y++ LV + Sbjct: 63 VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLMELDNYTLADLVEENQPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|30020894|ref|NP_832525.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|206971747|ref|ZP_03232696.1| rrf2 family protein [Bacillus cereus AH1134] gi|218231378|ref|YP_002367487.1| rrf2 family protein [Bacillus cereus B4264] gi|229079960|ref|ZP_04212491.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|229128112|ref|ZP_04257094.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|229150981|ref|ZP_04279192.1| Transcriptional regulator [Bacillus cereus m1550] gi|229179055|ref|ZP_04306412.1| Transcriptional regulator [Bacillus cereus 172560W] gi|29896447|gb|AAP09726.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|206733132|gb|EDZ50305.1| rrf2 family protein [Bacillus cereus AH1134] gi|218159335|gb|ACK59327.1| rrf2 family protein [Bacillus cereus B4264] gi|228604423|gb|EEK61887.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228632541|gb|EEK89159.1| Transcriptional regulator [Bacillus cereus m1550] gi|228655387|gb|EEL11243.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|228703339|gb|EEL55794.1| Transcriptional regulator [Bacillus cereus Rock4-2] Length = 133 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + EC K C + V+ A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAKK 128 >gi|148979595|ref|ZP_01815600.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3] gi|145961680|gb|EDK26977.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3] Length = 160 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAGD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A +ES +C DC C ++ R + L ++ L++ Sbjct: 61 IAVGTVIAAVDESVDATKCHGR--ADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLE 124 >gi|148244681|ref|YP_001219375.1| Fe-S cluster-containing transcription factor [Candidatus Vesicomyosocius okutanii HA] gi|146326508|dbj|BAF61651.1| Fe-S cluster-containing transcription factor [Candidatus Vesicomyosocius okutanii HA] Length = 139 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A ++ P + I++ IS +L ++ L +A +V++VRG Sbjct: 1 MQLTTKGRYAVTAILDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A I + +++A +E+ + C C C + + Sbjct: 61 PGGGYLLDAKACDINLTQIIEAVDENIDLRRCKGIKV--CNNGRQCISHQLWCEVSEQIR 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L +++ ++ + +S K + Sbjct: 119 TFLNGKTLQMVIDDHNSNKGV 139 >gi|323702206|ref|ZP_08113873.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] gi|323532893|gb|EGB22765.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum nigrificans DSM 574] Length = 135 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R ++Y + + IAE I FL KIL+ L ++GIVE++RG Sbjct: 1 MRLNQATDYAFRAVLYLSRLPAGEVVEAKTIAEDEQIPIRFLLKILRLLSQSGIVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG +L + +ITI DVV+A E V C H +C G+ C L L Sbjct: 61 VSGGYKLAKKPKEITIKDVVEAVEGPIEVNRCLI-HPAECNKNGTGFCPLHKALFSIRQV 119 Query: 118 FFDVLTQYSIECL 130 L Y E L Sbjct: 120 LNRELASYDFETL 132 >gi|269965159|ref|ZP_06179293.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B] gi|269830145|gb|EEZ84372.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B] Length = 155 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGADAHS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I I V+ A +ES +C K DC C ++ R + D L ++ L+ Sbjct: 61 IAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLE 124 >gi|294013220|ref|YP_003546680.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676550|dbj|BAI98068.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 141 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L I+ D+V+ T S + C + +C C L V+ + + Sbjct: 62 GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121 Query: 118 FFDVLTQYSIEC 129 VL S+ Sbjct: 122 TAKVLDSISLAE 133 >gi|307293474|ref|ZP_07573318.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] gi|306879625|gb|EFN10842.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] Length = 141 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L I+ D+V+ T S + C + +C C L V+ + + Sbjct: 62 GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121 Query: 118 FFDVLTQYSIEC 129 VL S+ Sbjct: 122 TAKVLDSISLAE 133 >gi|296132372|ref|YP_003639619.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR] gi|296030950|gb|ADG81718.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR] Length = 134 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+ + TDY R +++ A IA I FL KI+ L+KAGIV++ RG Sbjct: 1 MHINQATDYAFRAVLFLAQQPKGKVVEAQVIARKEVIPMRFLLKIMPSLIKAGIVKSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L + I+ LDVV A E + C + C G C + L Sbjct: 61 VGGGYYLAKDPRDISFLDVVTAIEGPVAINRCLIDPEY-CSKKGPPGCKVHRALDGIQKK 119 Query: 118 FFDVLTQYSIECLVR 132 ++ L ++ L+ Sbjct: 120 LYNELKNHNFGNLIN 134 >gi|281356072|ref|ZP_06242565.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] gi|281317441|gb|EFB01462.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis ATCC BAA-548] Length = 145 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ ++ YG+R+L+ A + ++ ++AE IS+ ++ +I+ L +G+V + RGR Sbjct: 4 LSTKSRYGLRILLQLAQCRGSGRSCKVRELAEQQSISDAYVEQIMIALKGSGLVFSARGR 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R IT+LDV++ E + C + C + C +V ++ AF Sbjct: 64 NGGYLLGRVPADITVLDVIELFEGRIDLVGCTGPEQ-RCARIAGCLSRTVWQRLSEAFRR 122 Query: 121 VLTQYSIECLVRNRSS 136 ++ ++ + + Sbjct: 123 EAAAITLADILNSPPA 138 >gi|269962422|ref|ZP_06176772.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3] gi|269832918|gb|EEZ87027.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3] Length = 155 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A Sbjct: 1 MLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAHS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I I V+ A +ES +C K DC C ++ R + D L ++ L+ Sbjct: 61 IAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118 Query: 133 NRSSIK 138 + ++ Sbjct: 119 DNEVLQ 124 >gi|237785127|ref|YP_002905832.1| Rrf2 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758039|gb|ACR17289.1| transcriptional regulator, Rrf2 family [Corynebacterium kroppenstedtii DSM 44385] Length = 139 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LTK +D G+R LM+ + ++AEA + K++ L + GI++ RGR Sbjct: 1 MNLTKFSDLGLRALMHMVGSGNARTTAREVAEAINAPRTHVSKVISRLTEFGIIDATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L A+ ++ +V+ E V +C H CP +C L L +A AFF Sbjct: 61 GGGITLVDGAEDYSVGAIVRFLEGPSPVIDC--EHPHPCPFNVNCRLQHELAQAQEAFFA 118 Query: 121 VLTQYSIECLVRNRSSI 137 L +I+ + R + Sbjct: 119 SLDAVAIKDITPVRPQV 135 >gi|114798504|ref|YP_760252.1| putative transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114738678|gb|ABI76803.1| putative transcriptional regulator [Hyphomonas neptunium ATCC 15444] Length = 136 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 70/131 (53%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R+LM A D +++AE +S L KI+Q L AG+++T RG Sbjct: 1 MRLTAFTDYGLRMLMRMASAPDRAFSTAELAEEFGLSRNHLAKIMQRLAGAGLIQTRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I + +++ EE + EC ++ C L C L + L+ A AF Sbjct: 61 GGGAELGRPANEIRLGAIIRLLEEGQPLVECLSADGGACTLTPRCRLKARLQSAEMAFLS 120 Query: 121 VLTQYSIECLV 131 L Q ++ + Sbjct: 121 ELDQSTLADIA 131 >gi|254384664|ref|ZP_05000003.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194343548|gb|EDX24514.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 163 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD +RVLM A+ + +A + K++ L G++E RGR Sbjct: 13 MRLTRFTDLALRVLMRLAVADADLPTTRDVAATMEVPYTHSAKVVARLRHLGLIEARRGR 72 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ VV+ E + V +C + CPL G+C L LR A AFF Sbjct: 73 GGGLALTAAGRAASVGGVVRELEGAGDVVDC--DGAVPCPLRGACVLRGALRGAQEAFFA 130 Query: 121 VLTQYSIECLVRNRSS 136 L ++ LV + Sbjct: 131 ALDPLTVNDLVAAPTG 146 >gi|302522427|ref|ZP_07274769.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. SPB78] gi|302431322|gb|EFL03138.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. SPB78] Length = 151 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A H ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I++LDVV+A + A ++ P + GL ++ R D Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGRLAYP-GPAAGLPALWRTLEERARD 119 Query: 121 VLTQYSIECLVRNRSSIK 138 +L + S+ L R + + Sbjct: 120 LLGEVSLASLAREAPTTR 137 >gi|309791704|ref|ZP_07686195.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] gi|308226254|gb|EFO79991.1| rrf2 family transcriptional regulator [Oscillochloris trichoides DG6] Length = 146 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DY +R L A H P + +IA I +L +L L KAG++E++RG Sbjct: 1 MRISNKGDYALRALFDLAQHIGRGPIQSDEIATRQGIPVNYLNHLLISLRKAGLIESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + IT+L++ + E AE I + + Sbjct: 61 SQGGHLLARSPESITLLEIFEVVEGQLLCAEPARDDLIPTVPEDRQLINDFWVQLRQRVE 120 Query: 120 DVLTQYSIECLVRNRSS 136 +L +++ L + + Sbjct: 121 QMLAGITLDDLCQRKQQ 137 >gi|28211027|ref|NP_781971.1| RRF2 family protein [Clostridium tetani E88] gi|28203466|gb|AAO35908.1| RRF2 family protein [Clostridium tetani E88] Length = 148 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ ++ +++ I+E ISE +L +IL L K G++ + +G Sbjct: 4 MQISTKGRYGLKAMVNIGVYSSLESVTKKSISEMEDISEKYLEQILSVLKKNGLINSKKG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++IT+ D+++ E V D ++ C +V K Sbjct: 64 PQGGYTLARNDNEITVGDILRTLEGELEVVN--LEEYNDSNIMELCLKRNVWNKLNKEIN 121 Query: 120 DVLTQYSIECLVRNRSSIK 138 ++ ++E LV+ K Sbjct: 122 TLVDSITLEELVQEYKGYK 140 >gi|229070249|ref|ZP_04203500.1| Transcriptional regulator [Bacillus cereus F65185] gi|228712867|gb|EEL64791.1| Transcriptional regulator [Bacillus cereus F65185] Length = 133 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + + + A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMFFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + EC K C + V+ A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAKK 128 >gi|77165949|ref|YP_344474.1| hypothetical protein Noc_2491 [Nitrosococcus oceani ATCC 19707] gi|254433726|ref|ZP_05047234.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27] gi|76884263|gb|ABA58944.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207090059|gb|EDZ67330.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27] Length = 158 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDY I ++ A+ + + ++ + + KIL+ L +AG++ + RG + Sbjct: 3 RMSKMTDYAIVLMTRLAMDPKGQHAAADLSAQVEMPLPTVSKILKQLARAGLLLSARGAQ 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP + I++ +++ E + EC ++ +C C + + A + Sbjct: 63 GGYSLGRPPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCSTRAHWEQINQAVYGA 121 Query: 122 LTQYSIECLVR 132 L + + +V+ Sbjct: 122 LNEIKLSDMVQ 132 >gi|317488646|ref|ZP_07947188.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|316912252|gb|EFV33819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] Length = 147 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +R+++ A + + +++E IS +L ++ +PLV+AG++ +VRG+ Sbjct: 6 VSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGKG 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + I DV++A E S C + CP G C Sbjct: 66 GGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVIER 125 Query: 121 VLTQYSIECLV 131 + ++ L Sbjct: 126 YVDGVTLADLA 136 >gi|219847295|ref|YP_002461728.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541554|gb|ACL23292.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus aggregans DSM 9485] Length = 146 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R + A H + P + IA I +L ++L L +AG+VE++RG Sbjct: 1 MRISSKGEYGLRAVFDLAQHYGEGPIQSESIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R + I++L+V+ E E + + V + Sbjct: 61 PQGGHLLARSPETISLLEVLTVLEGPILPTEGGRDDLQPTEPLDRALIDEVWSELRTLIE 120 Query: 120 DVLTQYSIECLVRNRSS 136 L +++ L + + S Sbjct: 121 QRLAGLTLDDLCQRKRS 137 >gi|126347965|emb|CAJ89685.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 172 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 4/137 (2%) Query: 2 HLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 LTK TD +R +M A+ D P ++AEA + K + L G+VE RG Sbjct: 26 RLTKFTDLALRSVMRLAVVRDGDDPLTTREVAEAVGVPYTHAAKAITRLRHLGVVEARRG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L P + ++ +V+ E V C CPL G+C L LR+A AF+ Sbjct: 86 RGGGLTLTDPGRRASVGRLVRELEGDGEVVAC--EGDSPCPLRGACRLRGALREAQEAFY 143 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV + + Sbjct: 144 AALDPLTVTDLVASPTG 160 >gi|220904349|ref|YP_002479661.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868648|gb|ACL48983.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 147 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+ A ++ Q+A IS +L +I++ L GI+ VRG Sbjct: 1 MRFSTRTRYGLRFLLRLAAQPQGSLLQLGQVAREENISSGYLEQIVRALRPMGILRAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +I + +V + E C + + C C + Sbjct: 61 SGGGYALAKPPAEINMEEVFQHLEGEISPVRCLSKGR-SCQREKQCSTREFWSELDGHIR 119 Query: 120 DVLTQYSIECLVRNRS 135 L Q +++ ++ + Sbjct: 120 SFLQQRTLQEIIESEK 135 >gi|78063784|ref|YP_373692.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|77971669|gb|ABB13048.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] Length = 173 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ +YG+ L+Y A + + +AE +S + K+ L KAGIV + G Sbjct: 4 ISTGVEYGLHCLLYLADTSTGVRDASVRDLAEMQGVSVDYAAKLFTRLAKAGIVVSSEGI 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111 RGG L RPA I++ DVV+A + + +C F G+C + +V+ Sbjct: 64 RGGFALARPARDISVQDVVEAIDGDKRLFDCREVRGQCAVFEGEPPAWATRGTCSIHAVM 123 Query: 112 RKALNAFFDVLTQYSIECLV 131 + A A + L + S+ L Sbjct: 124 QAAERAMREELKKQSLADLA 143 >gi|21911420|gb|AAM80543.1| StaS [Streptomyces toyocaensis] Length = 154 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T RTDY +R + A + P +++ I FLF IL+ L A +V +VRG Sbjct: 1 MRITARTDYAVRAMAELAAEGETPLTAEELSARQDIPVRFLFGILRELRLARLVHSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L A++IT+ V++A + + ++ P + L V R + Sbjct: 61 QGGYLLASAAEEITLAAVIRAVDGPLASVRELSLTGLEYP-GPAAVLPDVWRAVRTSLRQ 119 Query: 121 VLTQYSIECLVRNR 134 VL ++ L R Sbjct: 120 VLETTTLADLARGE 133 >gi|302671823|ref|YP_003831783.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396296|gb|ADL35201.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus B316] Length = 131 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ Y +R+L+ A +D + IAE IS+ +L I + LVK G++ G+ Sbjct: 2 FSTKSRYALRILIDLAQQKSDDFIPLKDIAERQDISKKYLEIIAKDLVKGGLIRGASGKH 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R + ++ +++ E +F C + +CP G C S+ + + Sbjct: 62 GGYMLTRAPEDYSVGEIIDHMEGTFAPVVCLEENAGECPRSGVCKTISMWTEFYELERNF 121 Query: 122 LTQYSIECLV 131 + L+ Sbjct: 122 FYGKKLSDLL 131 >gi|307294771|ref|ZP_07574613.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] gi|306879245|gb|EFN10463.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium chlorophenolicum L-1] Length = 165 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 12/145 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY------------PNRISQIAEACCISELFLFKILQPL 48 M L+ DY + ++ A H + ++ I K++ L Sbjct: 1 MRLSSFADYAVVLMSAAARHCGAGAGLDPATNKYVKMNATTLSAETGIPLPTAQKLVSRL 60 Query: 49 VKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108 AG++E+ RG GGVRL RP IT+ DVV+A E + C DC L C + Sbjct: 61 SAAGLLESSRGTGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIR 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 + A NA L +I L R Sbjct: 121 PHMNVANNAIRSALAGVTIASLARE 145 >gi|153938123|ref|YP_001392722.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152934019|gb|ABS39517.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|295320703|gb|ADG01081.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] Length = 133 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + I+ LD++ A E + +C C + V+ A Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSP------SECVIKKVMLSAEKKME 114 Query: 120 DVLTQYSIECLVRN 133 + L+ I LV+ Sbjct: 115 EELSNQKISDLVKK 128 >gi|103486168|ref|YP_615729.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976245|gb|ABF52396.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis alaskensis RB2256] Length = 166 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + ++ A P + +AE I K++ L +AG++ RG Sbjct: 1 MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL RPA I++ D+++A E + C A + DC L GSC + A Sbjct: 61 SGGGVRLARPAAAISVADIIEAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVR 120 Query: 120 DVLTQYSIECL 130 L + S+ L Sbjct: 121 GALAEISLASL 131 >gi|227357123|ref|ZP_03841492.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227162655|gb|EEI47622.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 126 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ I+++ + +S + KI+ L G VE +RG+ GG+RL +PA I + + Sbjct: 3 SLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRGKNGGIRLGKPAADIIVGE 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+A E + C A C + +C L VL +A+ F L ++++ LV N S + Sbjct: 63 VVRALE-PLSLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSPL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|296123422|ref|YP_003631200.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM 3776] gi|296015762|gb|ADG69001.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus DSM 3776] Length = 156 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 5/149 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L++++DY +R L+ AI P + ++A+ I FL I+ L AG V +V Sbjct: 1 MKLSRKSDYALRALVTLAIRQREGGPPTPVRELAKINDIPRRFLEMIMLELKAAGWVTSV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 GR GG L P +Q+++ VV+ + + C + +H C SC VL N Sbjct: 61 AGRIGGFHLAVPPEQLSMGQVVRLFDGTLAPLPCVSVTHHEVCSQETSCRFRRVLLDIRN 120 Query: 117 AFFDVLTQYSIECLVRNRSSIK-KIFNAG 144 + Q +++ +V ++ ++ +IF G Sbjct: 121 YTARRMDQATLQAVVDSQPVMREEIFAVG 149 >gi|323137714|ref|ZP_08072790.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] gi|322397011|gb|EFX99536.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] Length = 150 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 71/142 (50%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT +D R L++ + + I +I+ A SE L K+ LVK ++ RGR Sbjct: 1 MRLTTHSDLAFRTLIFLGVAGERGATIPEISSAFGASEHHLRKVAFELVKLELIRATRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L Q+TI ++++ E F +EC + + C + G+CGL V ++L A F Sbjct: 61 NGGLALNISPAQVTIGELLRKLEPEFAESECLGAGQKGCVIFGACGLQRVFNESLGALFG 120 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 VL +Y++ ++ + + Sbjct: 121 VLDRYTLADVLDSSQGVAARLG 142 >gi|313672582|ref|YP_004050693.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939338|gb|ADR18530.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 137 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 1 MHLTKRTDYGIRVLM-YCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T ++ Y IR + A+ D P I +I++ IS +L ++ L K IV++VR Sbjct: 1 MKITTKSRYAIRAIFAMIALGGDKEPVSIKKISDFEDISIKYLEQLFTKLRKNKIVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG +P ++IT+ D+V + + +C S+ C C + V Sbjct: 61 GTLGGYIFAKPLNEITLRDIVYSMDGPIKPVDCIDSNG--CEKSSVCAVNWVWFGLKKDI 118 Query: 119 FDVLTQYSIE 128 + L + +++ Sbjct: 119 DNYLERITLQ 128 >gi|226303826|ref|YP_002763784.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229492573|ref|ZP_04386376.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus erythropolis SK121] gi|226182941|dbj|BAH31045.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229320559|gb|EEN86377.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus erythropolis SK121] Length = 151 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T + DY +R L+ A P + +A++ I FL +L L + G+V + RG Sbjct: 1 MHITAKVDYAVRTLVELAAVGPDPAKAEFLAKSQVIPHKFLEAVLSDLRRGGLVNSRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R AD+ITI DV++A E +D + L V Sbjct: 61 DGGYWLARSADEITIADVIRAVEGPLASIRGQRPEDVDY-GGPATPLKEVWIAVRVNLRA 119 Query: 121 VLTQYSIECLV 131 VL ++ + Sbjct: 120 VLENVTLTDVA 130 >gi|241206059|ref|YP_002977155.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859949|gb|ACS57616.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 154 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L ++E V + SI Sbjct: 122 IAAILDNMTLEQFVADGGSI 141 >gi|326776682|ref|ZP_08235947.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf. griseus XylebKG-1] gi|326657015|gb|EGE41861.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf. griseus XylebKG-1] Length = 148 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD +RVLM A+ + P ++A + K++ L G+++ RG Sbjct: 1 MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L I +V+ E V EC CPL +C L LR A AF+ Sbjct: 61 RGGGLTLTPAGRSTPIGPLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV + + Sbjct: 119 AALDPITVTDLVASPTG 135 >gi|295688500|ref|YP_003592193.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430403|gb|ADG09575.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis ATCC 21756] Length = 143 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ Y +R ++ A N ++AE FL IL L + G++ + RG+ G Sbjct: 2 LSQKARYALRAMIELARENGQ-VTAGELAERADAPRKFLEAILLSLSREGLIISRRGKFG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118 G L R ADQI+ ++++ + + C + DC + +C L L +A +A Sbjct: 61 GYVLGRTADQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDIATCALREALLRARDAT 120 Query: 119 FDVLTQYSIECLVR 132 VL YS+ V+ Sbjct: 121 AAVLEGYSLADAVQ 134 >gi|152985752|ref|YP_001349321.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960910|gb|ABR82935.1| transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 174 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L++ A + + +AE + L K+ L KAG+V Sbjct: 1 MALYSAGVEYGIHCLLFLADEKGDSRESSVRALAELQGVPPELLAKVFTRLAKAGLVAAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG RL RPA++I++LDVV+A + + EC F + +C + Sbjct: 61 EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREIRERCALFEGNPPSWATRNTCSIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 +V+ A + L Q +I LVR Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145 >gi|225628410|ref|ZP_03786444.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] gi|225616256|gb|EEH13304.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str. Cudo] Length = 166 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C + V+ A Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAEWQVRHVMLDVREAI 144 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 145 ANVLDHRTLAD 155 >gi|298530274|ref|ZP_07017676.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] gi|298509648|gb|EFI33552.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira thiodismutans ASO3-1] Length = 143 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +Y +R ++Y A ++A+A I E F+ K+ Q L +AGI++ + Sbjct: 1 MMLTRGGEYAVRCVLYLAACTTPGQVAPKKEVAQAMQIPESFMAKVAQTLSRAGIIQITQ 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG RL + ++++L VV+A + F+ +C S + C SCG+ V A Sbjct: 61 GARGGYRLLKDPSRLSLLQVVEAVDGEIFLNQCIMSPE-SCRRSPSCGVHRVWETARQRL 119 Query: 119 FDVLTQYSIECLVRNR 134 L + L R Sbjct: 120 RQTLDETDFATLAREE 135 >gi|167628913|ref|YP_001679412.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] gi|167591653|gb|ABZ83401.1| transcriptional regulator, rrf2 family, putative [Heliobacterium modesticaldum Ice1] Length = 161 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++K+TDY +R L A + P + ++AE I + FL I+ + + V +V G Sbjct: 1 MKISKKTDYALRALCDLAECYGKDPIPLRELAEKRGIPKRFLEHIMLYMKEKKWVASVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 + GG L P ++IT+ +VV+ + C + + C SC ++ + Sbjct: 61 KYGGYVLACPPEEITLGEVVRHFDGILAPIGCVSVTQYQCCAEEKSCKFRPLMADIRDFV 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 + ++ ++ + Sbjct: 121 AKQMDSTTLRSIIEGAPML 139 >gi|83310381|ref|YP_420645.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945222|dbj|BAE50086.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 128 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TD+ IR+L+Y + H D + ++AE IS L KI++ L + G ++TVRG+ Sbjct: 1 MKITQFTDFSIRLLIYLSRHPDRVVTVREVAEYYDISAEHLKKIVRSLAELGHIQTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I + + + +E+ + C CP+ C L ++ AL AF Sbjct: 61 HGGLRLGREPQAIDLGHLFRQ-QENLALLPCH-EPCDSCPIAD-CRLRGLVDSALAAFLA 117 Query: 121 VLTQYSIECLV 131 V ++ ++ Sbjct: 118 VFDGKTLADVI 128 >gi|226326637|ref|ZP_03802155.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198] gi|225204858|gb|EEG87212.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198] Length = 126 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 4/124 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ I+++ + +S + KI+ L G VE +RG+ GG+RL +PA I + + Sbjct: 3 SLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHLGFVEAIRGKNGGIRLGKPATDIIVGE 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VV+A E + C A C + +C L VL +A+ F L ++++ LV N SS+ Sbjct: 63 VVRALE-PLSLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSSL 118 Query: 138 KKIF 141 K+ Sbjct: 119 YKLL 122 >gi|71274966|ref|ZP_00651254.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon] gi|71901204|ref|ZP_00683307.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|170730004|ref|YP_001775437.1| hypothetical protein Xfasm12_0819 [Xylella fastidiosa M12] gi|71164698|gb|EAO14412.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon] gi|71729048|gb|EAO31176.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|167964797|gb|ACA11807.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 153 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A H +++AE + + KIL+PL +AG+VE RG Sbjct: 3 RVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGAY 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R +IT++ +V+A E + EC H C + CG+ S + Sbjct: 63 GGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRSNWQLINTLIAQA 121 Query: 122 LTQYSIECLVR 132 L ++ ++ Sbjct: 122 LRSITLAQMLA 132 >gi|307325862|ref|ZP_07605062.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306888650|gb|EFN19636.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 149 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TD +R +M A+ P Q+A + L K+ L G++ET RGR Sbjct: 1 MRLTKSTDLALRTIMRLAVTGAEPCTARQVAGELQVPYSHLAKVAARLQHLGLIETRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ +V+ E V +C CPL C L LR+A AF Sbjct: 61 GGGLALTATGRTASVGQLVREFEGVGDVVDC--EGDTPCPLRQGCRLRMALRRAQEAFLA 118 Query: 121 VLTQYSIECLVRNRSS 136 L +++ LV + + Sbjct: 119 SLDPLTVDDLVASPTG 134 >gi|312115582|ref|YP_004013178.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311220711|gb|ADP72079.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 158 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A ND P +S I+ +S +L ++ L + GIV++VRG Sbjct: 1 MLLSTKGRYAVMAIVEVARQNDARPLALSDISLRLDLSLAYLEQLFMKLRRKGIVQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD I+I +V+ A +E + C K C C ++ Sbjct: 61 PGGGYILARNADAISIGEVMAAVDEPVRMTRCEPEDKAGCVASKRCSTHNLWLALGTHIE 120 Query: 120 DVLTQYSIECLVRNR 134 L ++ ++ R Sbjct: 121 RFLADATVADVLTGR 135 >gi|225874112|ref|YP_002755571.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196] gi|225793907|gb|ACO33997.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196] Length = 151 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 2/134 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LTK+ DYG+ + Y A H P+ IAEA I L KILQ L + G++ + G Sbjct: 3 RLTKKADYGLMAVKYLAEHAGEPSRSAKDIAEAYHIPAQLLAKILQKLTREGLLRSHAGM 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R A I+ +V++A + F+ C + C L SC + L + + D Sbjct: 63 NGGYSLTRAAKDISAFEVIRAIDGPLFITSCTTGTSV-CDLTASCTIKEPLARVNESIID 121 Query: 121 VLTQYSIECLVRNR 134 +L + I L+ + Sbjct: 122 LLRKTRISDLMDHE 135 >gi|296123021|ref|YP_003630799.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM 3776] gi|296015361|gb|ADG68600.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus DSM 3776] Length = 154 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+++ DY +R+L+ A + P +S++A + FL I+ L G +E+ G Sbjct: 1 MKLSRKADYALRILITLAARFGESPISLSELARMNDAPKRFLEHIVLDLKSQGWIESSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118 R+GG L +P +QIT+ V++ + + C + S C C VL + N Sbjct: 61 RKGGYVLAQPPEQITMGQVIRFFDGVIAPSPCVSTSAHRPCSQARLCRFRRVLLEIRNFA 120 Query: 119 FDVLTQYSIECLVR 132 L ++ L+ Sbjct: 121 SRYLDNMTLARLID 134 >gi|229133660|ref|ZP_04262486.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228649695|gb|EEL05704.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] Length = 133 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I+ LD++ A E + EC H+ C + V+ +A Sbjct: 61 PKGGYSLSSNWEDISFLDIIHAIEGKTSLFECCLHHEPG------CVINEVMLEAEGKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIADLTKK 128 >gi|168181991|ref|ZP_02616655.1| oligopeptide transport system permease protein OppB [Clostridium botulinum Bf] gi|237796821|ref|YP_002864373.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657] gi|182674817|gb|EDT86778.1| oligopeptide transport system permease protein OppB [Clostridium botulinum Bf] gi|229263736|gb|ACQ54769.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657] Length = 133 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + I+ LD++ A E + +C C + V+ A Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSP------SECVIKKVMLSAEKKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I LV+ Sbjct: 115 EELRNQKISDLVKK 128 >gi|150376652|ref|YP_001313248.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031199|gb|ABR63315.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 179 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ ++ A + I++IA + + FL I+ L AG + + +G Sbjct: 27 LTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPG 86 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I + V++ + C + DC +C + + +A Sbjct: 87 GGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEMCDDCSDPENCHVRRSMIVVRDA 146 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 ++L ++ + + Sbjct: 147 VANILDNMTLAQFAASEKDAADV 169 >gi|49081590|gb|AAT50195.1| PA2692 [synthetic construct] Length = 175 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L++ A + + +AE + L K+ L KAG+V Sbjct: 1 MALYSAGVEYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG RL RPA++I++LDVV+A + + EC F + +C + Sbjct: 61 EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 +V+ A + L Q +I LVR Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145 >gi|311694378|gb|ADP97251.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15] Length = 152 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H D P ++ I+ IS +L ++ L + +V ++RG GG RL RPA Sbjct: 1 MLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSIRGPGGGYRLSRPAAD 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + I +VV A ES C +K DC C + + L++ S+ L+R Sbjct: 61 LYIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIHQFLSEISLGDLMR 118 Query: 133 NRSSIKKIFN 142 + I+++ + Sbjct: 119 -KHEIRQVAD 127 >gi|332968974|gb|EGK08018.1| transcriptional repressor NsrR [Kingella kingae ATCC 23330] Length = 147 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT++TDY +RVL+Y AI++D I++IA+ IS+ L K++ LVK G + ++RG+ Sbjct: 1 MHLTQQTDYALRVLIYAAINDDGLVNIAEIAKVYNISKSHLMKVVTALVKGGFLYSIRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P +I + +VV+ E + ECF + +C + C L +L L F Sbjct: 61 GGGLRLGKPTAEINVGEVVRLME-PLTIVECFGD-RNECLISPHCRLAGILNSGLKVFLS 118 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L +Y++ L+ S +K+ Sbjct: 119 HLDKYTLADLI--NSDTQKML 137 >gi|15964324|ref|NP_384677.1| hypothetical protein SMc02267 [Sinorhizobium meliloti 1021] gi|307307060|ref|ZP_07586799.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|307320140|ref|ZP_07599560.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|15073501|emb|CAC45143.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306894186|gb|EFN24952.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306902000|gb|EFN32599.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 151 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I++IA+ I + FL IL L AG++ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGQTAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEMCDDCTDPETCRVRISMTSVRDA 121 Query: 118 FFDVLTQYSIECLVR 132 +L ++ Sbjct: 122 MSSILDSMTLAEFAA 136 >gi|15597888|ref|NP_251382.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107102215|ref|ZP_01366133.1| hypothetical protein PaerPA_01003266 [Pseudomonas aeruginosa PACS2] gi|116050677|ref|YP_790503.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891147|ref|YP_002440013.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235672|ref|ZP_04928995.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719] gi|254241118|ref|ZP_04934440.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192] gi|296388842|ref|ZP_06878317.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313107747|ref|ZP_07793927.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9948765|gb|AAG06080.1|AE004697_5 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115585898|gb|ABJ11913.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167603|gb|EAZ53114.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719] gi|126194496|gb|EAZ58559.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192] gi|218771372|emb|CAW27139.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310880429|gb|EFQ39023.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 174 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L++ A + + +AE + L K+ L KAG+V Sbjct: 1 MALYSAGVEYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG RL RPA++I++LDVV+A + + EC F + +C + Sbjct: 61 EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 +V+ A + L Q +I LVR Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145 >gi|332521686|ref|ZP_08398139.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola 5H-3-7-4] gi|332042775|gb|EGI78975.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola 5H-3-7-4] Length = 135 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L+Y A P +I+ I++A IS+ FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALVYLAKQEVRVPVQIATISKAENISQKFLESILLTLKKKGILGSKKGKL 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + +V++ E + C F DCP C + +++ + ++ Sbjct: 62 GGYYLVKEPETVAMAEVMRVLEGPIAMVPCVSLNFYEPCDDCPDETVCAVHNLMEEVRDS 121 Query: 118 FFDVLTQYSIECLV 131 + ++ + Sbjct: 122 SLKIFNNKTLADFI 135 >gi|161505868|ref|YP_001572980.1| hypothetical protein SARI_04045 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867215|gb|ABX23838.1| hypothetical protein SARI_04045 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 167 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI LM + +IA+ + +L KI L KAG+V ++ G+ Sbjct: 5 SSGVEYGIHSLMCMVDSKGDAREMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG +L +PA+ IT+LDVV A + + EC F G CG+ SV+ Sbjct: 65 GGFQLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLTVFDEQPPAWACEGICGVRSVMD 124 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L Q++I L R Sbjct: 125 MAQQRMEEALEQHTILDLARK 145 >gi|238018522|ref|ZP_04598948.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748] gi|269798637|ref|YP_003312537.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Veillonella parvula DSM 2008] gi|313894420|ref|ZP_07827985.1| putative HTH-type transcriptional regulator CymR [Veillonella sp. oral taxon 158 str. F0412] gi|237864993|gb|EEP66283.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748] gi|269095266|gb|ACZ25257.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula DSM 2008] gi|313441244|gb|EFR59671.1| putative HTH-type transcriptional regulator CymR [Veillonella sp. oral taxon 158 str. F0412] Length = 149 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ A D P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 + GG RL + + TI++++ ATEES + D + N Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE--RTVGFWAGLQNYI 118 Query: 119 FDVLTQYSIECLVR 132 D L +++ ++ Sbjct: 119 HDYLENVTLQDVID 132 >gi|307326576|ref|ZP_07605770.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306887770|gb|EFN18762.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 154 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T ++DY +R + A P Q+A I FLF IL+ L A +V +VRG Sbjct: 1 MRITAKSDYAVRAMAELAAAEGSPLTAEQVATRQDIPLRFLFGILRELRLAHLVRSVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA +IT+ D ++A + ++ P + L V R + Sbjct: 61 EGGYLLARPAKEITLADAIRAMDGPLANVRDVGLSGLEYPGAAA-VLPDVWRAVRASLRQ 119 Query: 121 VLTQYSIECLVRNR 134 VL + + L Sbjct: 120 VLEKTTFADLAAGE 133 >gi|282899141|ref|ZP_06307122.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] gi|281196057|gb|EFA70973.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] Length = 149 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H N P +I QIA I + +L ++L L + GI+++ R Sbjct: 1 MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L R +IT+LD+++ E +AE + K S + + ++A A Sbjct: 61 GSKGGYLLAREPRKITLLDILECLEGLDIKIAEDNTNPKTAPKTADSGIIDEIWKEARQA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 VL +YS+E L R+ +++ Sbjct: 121 ANLVLEKYSLEDLCEKRTLRRQL 143 >gi|16264868|ref|NP_437660.1| hypothetical protein SM_b20994 [Sinorhizobium meliloti 1021] gi|307307992|ref|ZP_07587710.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|15141007|emb|CAC49520.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306901396|gb|EFN32000.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 177 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ ++ A + I++IA + + FL I+ L AG + + +G Sbjct: 28 LTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPG 87 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I + V++ + C + DC +C + + +A Sbjct: 88 GGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVRDA 147 Query: 118 FFDVLTQYSIECLVRNRSS 136 D+L ++ + Sbjct: 148 VADILDNMTLAQFAASERE 166 >gi|257462826|ref|ZP_05627232.1| RRF2 family protein [Fusobacterium sp. D12] gi|317060455|ref|ZP_07924940.1| rrf2 family protein [Fusobacterium sp. D12] gi|313686131|gb|EFS22966.1| rrf2 family protein [Fusobacterium sp. D12] Length = 138 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG RL +IT+ V ++ V +C H+ C CG T + K + Sbjct: 61 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCK-ETICGSTCIWSKLDH 119 Query: 117 AFFDVLTQYSIECLVRN 133 A +L+ ++E + N Sbjct: 120 ALTKILSDTTLEDFINN 136 >gi|312887338|ref|ZP_07746939.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] gi|311300141|gb|EFQ77209.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] Length = 145 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 5/144 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ L+ + + P +IS+IAE I + FL +IL L AG + + +G Sbjct: 2 LSKKTKYAIKALVSLGKNMGNPPVQISKIAEEEKIPKKFLEQILLDLRNAGFLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I ++ V++ T+ + C F +C +CG+ SV + Sbjct: 62 GGYSLNKDPKEIFLVQVMRITDGPIAMVPCASLNFYHKCEECKSELTCGIRSVFIDVRDV 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141 +L++ SI ++ ++ + Sbjct: 122 TLKILSETSIADIIEREVNLISLI 145 >gi|237744245|ref|ZP_04574726.1| RRF2 family protein [Fusobacterium sp. 7_1] gi|256027909|ref|ZP_05441743.1| RRF2 family protein [Fusobacterium sp. D11] gi|260494171|ref|ZP_05814302.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_33] gi|289765858|ref|ZP_06525236.1| RRF2 family protein [Fusobacterium sp. D11] gi|229431474|gb|EEO41686.1| RRF2 family protein [Fusobacterium sp. 7_1] gi|260198317|gb|EEW95833.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_33] gi|289717413|gb|EFD81425.1| RRF2 family protein [Fusobacterium sp. D11] Length = 143 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A + + RI +I+E IS +L +IL L I+E R Sbjct: 1 MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L ++I + + + ++ V +C K+ CG T + K N Sbjct: 61 GPTGGYKLAIKPEEIDLYMIYRILDDEEKVIDCNEMGEGKVHNCSEAGCGDTCIWSKLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +L++ S++ + N I++ Sbjct: 121 AMTKILSETSLQDFINNGKRIQE 143 >gi|319780584|ref|YP_004140060.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166472|gb|ADV10010.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 156 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ A + ++ +A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLARLPAGQLAFVNDVATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL RPAD+I + VV+ + C + DC +C + ++ + A Sbjct: 62 GGYRLARPADEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDC-NEATCQVRHLMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL Q S+ + Sbjct: 121 IAEVLDQRSLAEM 133 >gi|228921441|ref|ZP_04084764.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838214|gb|EEM83532.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 133 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQHVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + EC K C + V+ A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAKK 128 >gi|228953101|ref|ZP_04115161.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806607|gb|EEM53166.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 133 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + EC K C + V+ A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EKLRNQKIVDLAKK 128 >gi|258405006|ref|YP_003197748.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] gi|257797233|gb|ACV68170.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium retbaense DSM 5692] Length = 163 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ YGIR+++ A P + +A+ IS +L K+ + L ++G + + G Sbjct: 1 MRLSTRSRYGIRLMLDIAQQGQHGPVALRDVADRQDISLKYLEKLSRRLRESGFLMSRLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RPA +ITI +++++ E + +C+ K C V C S+ + Sbjct: 61 AKGGYVLGRPAAEITIKELIESLEGHVGLVQCWLEEKA-CSRVDQCLAYSLWARINEVLA 119 Query: 120 DVLTQYSIECLV 131 L ++ ++ Sbjct: 120 RELNAITLADML 131 >gi|330683915|gb|EGG95683.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU121] Length = 140 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PA++IT D+++ E E S + + +A Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL +++ L + + + + Sbjct: 113 DVLDNTTLQYLAEYKETDQNL 133 >gi|251794316|ref|YP_003009047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247541942|gb|ACS98960.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 166 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 15/154 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + +Y + L+Y I N+ I ++A I E +L KI L KAGIV +V G Sbjct: 1 MQYSVGVEYALHCLVYL-IPNESTIGIKELAFFQGIPETYLSKIFTKLTKAGIVSSVPGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDC-PLVGSCGLTS 109 +GG +L R D I+ DVV+A E + +C DC GSC + Sbjct: 60 KGGFKLARVPDDISFWDVVEAVEGKKPIFQCQNIKDKGYLYRNRDCSDCAASTGSCSINL 119 Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 V+ +A + L + L + ++ A Sbjct: 120 VMLEAEETMQNYLRNKKLSWL---EEELDRVLPA 150 >gi|228939890|ref|ZP_04102467.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972780|ref|ZP_04133379.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979364|ref|ZP_04139700.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228780368|gb|EEM28599.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228786995|gb|EEM34975.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819821|gb|EEM65869.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940538|gb|AEA16434.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 133 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + +C K C + + A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPG------CLINEAMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAKK 128 >gi|258591782|emb|CBE68083.1| Transcriptional regulator, BadM/Rrf2 family [NC10 bacterium 'Dutch sediment'] Length = 136 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + A+H P +I IA+ + +L +IL L +AG +E+ RG GG L + + Sbjct: 1 MQDLALHYEQGPIQIEDIAKRQHLPARYLEQILLSLKRAGFLESKRGVSGGYYLAKHPRE 60 Query: 73 ITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 IT+ +++A E C S + + C C L + + +A ++ + S+E L Sbjct: 61 ITVGAIIRAMEGPIVPIFCVGSGQREICIEEPQCCLRDIWAEVRDAVSHIVDRTSLEDLC 120 Query: 132 RNRSSIKK 139 + ++ Sbjct: 121 GQIRARRE 128 >gi|21673360|ref|NP_661425.1| hypothetical protein CT0525 [Chlorobium tepidum TLS] gi|21646455|gb|AAM71767.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 136 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y A+ + + ++A S++FL K +Q L KAGI +V+G Sbjct: 3 QVSRKFEYGLHAVTYLAMKGPEQVVTVKELAAEIGFSQVFLAKAMQSLNKAGITRSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L RPA+QIT+ D+ A E + C + C + +C + +D Sbjct: 63 KGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCQCEIESNCTHKGYMLNLQKRIYD 121 Query: 121 VLTQYSIECLVRN 133 +L + ++ L+ Sbjct: 122 LLAETTVAVLLER 134 >gi|312884218|ref|ZP_07743927.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367991|gb|EFP95534.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC BAA-2122] Length = 168 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL AD I I ++ A +ES +C DC C ++ + Sbjct: 61 PGGGYRLGGEADTIAIGMIIAAVDESVDATKCQGRG--DCQGGARCLTHTLWHDLSSRIS 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 D L ++ L+++ ++ Sbjct: 119 DFLNNITLGELMKDNEVLE 137 >gi|21225697|ref|NP_631476.1| hypothetical protein SCO7427 [Streptomyces coelicolor A3(2)] gi|81858295|sp|Q9L132|NSRR_STRCO RecName: Full=HTH-type transcriptional repressor nsrR gi|7160161|emb|CAB76346.1| Conserved hypothetical protein SC6D11.23 [Streptomyces coelicolor A3(2)] Length = 148 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TD +R LM A+ D P ++AE + K + L G+VE R Sbjct: 1 MRLTKFTDLALRSLMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++++ +V+ E V +C CPL G+C L LR A AF Sbjct: 61 GRGGGLTLTDLGRRVSVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAF 118 Query: 119 FDVLTQYSIECLVRNRSS 136 + L ++ LV + Sbjct: 119 YAALDPLTVTDLVAAPTG 136 >gi|13473798|ref|NP_105366.1| hypothetical protein mll4516 [Mesorhizobium loti MAFF303099] gi|14024549|dbj|BAB51152.1| mll4516 [Mesorhizobium loti MAFF303099] Length = 156 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ A + ++ IA I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLAHLPAGQLAFVNDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL R A++I + VV+ + C + DC +C + ++ + A Sbjct: 62 GGYRLARSAEEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDC-NEATCQVRHLMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL Q S+ + Sbjct: 121 IAEVLDQRSLAEM 133 >gi|116253531|ref|YP_769369.1| Rrf2 family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258179|emb|CAK09280.1| putative Rrf2 family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 154 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRN 133 +L ++E V + Sbjct: 122 IAAILDNMTLEQFVAD 137 >gi|320008624|gb|ADW03474.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces flavogriseus ATCC 33331] Length = 150 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD +RVLM + + P ++A + K++ L G+V+ R Sbjct: 1 MRLTRFTDVALRVLMRLTVTTDGEDPPTTREVAATMEVPYTHAAKVVARLQHLGLVDARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L +I +V+ E V EC CPL +C L S LR+A AF Sbjct: 61 GRGGGLTLTTAGRSASIGTLVRELEGPGEVVEC--EGDTPCPLRSACRLRSALRRAEEAF 118 Query: 119 FDVLTQYSIECLVRNRSS 136 + L ++ L + + Sbjct: 119 YASLDPLTVSDLAASPTG 136 >gi|256158354|ref|ZP_05456254.1| RfF2 family protein [Brucella ceti M490/95/1] gi|256252715|ref|ZP_05458251.1| RfF2 family protein [Brucella ceti B1/94] gi|260166777|ref|ZP_05753588.1| RfF2 family protein [Brucella sp. F5/99] gi|261219794|ref|ZP_05934075.1| transcriptional regulator [Brucella ceti B1/94] gi|261756154|ref|ZP_05999863.1| RRF2 family protein [Brucella sp. F5/99] gi|265996865|ref|ZP_06109422.1| transcriptional regulator [Brucella ceti M490/95/1] gi|260918378|gb|EEX85031.1| transcriptional regulator [Brucella ceti B1/94] gi|261736138|gb|EEY24134.1| RRF2 family protein [Brucella sp. F5/99] gi|262551162|gb|EEZ07323.1| transcriptional regulator [Brucella ceti M490/95/1] Length = 143 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118 GG L PA +I I ++++A + + C + C + V+ A Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAEWQVRHVMLDVREAI 121 Query: 119 FDVLTQYSIEC 129 +VL ++ Sbjct: 122 ANVLDHRTLAD 132 >gi|218531426|ref|YP_002422242.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Methylobacterium chloromethanicum CM4] gi|218523729|gb|ACK84314.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium chloromethanicum CM4] Length = 183 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 HL+ TDYG+R+LM+ + +A+ IS L KI Q LV+AG+VE +GR Sbjct: 21 HLSLHTDYGLRLLMHLTLAERGVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGR 80 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL R A +I + +V E VA+C + CPL+G C L A AFF Sbjct: 81 SGGVRLARDAREIRLGRLVADLEGVGTVADC---RRDPCPLLGRCRLKWAFDAAEQAFFL 137 Query: 121 VLTQYSIECLVRNR--SSIKKIFNA 143 L + ++ +V ++++ +F A Sbjct: 138 ELDRLTLADVVAGPTAAALRSLFRA 162 >gi|297193473|ref|ZP_06910871.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718251|gb|EDY62159.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 147 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +R +M A + P ++AE + + K + L G++E RG Sbjct: 1 MRLTKFTDLALRAVMRLAVLEQGGPLTTREVAEEMNVPYAHMAKAIARLQHLGVLEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + ++ +V+ E V C CPL G+C L LR A AF Sbjct: 61 RGGGLELTVLGRRASVGWLVRELEGEGEVVAC--EGDAPCPLRGACRLRRALRDAQEAFH 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV + + Sbjct: 119 ATLDPLTVADLVASPAG 135 >gi|239637568|ref|ZP_04678540.1| Rrf2 family protein [Staphylococcus warneri L37603] gi|239596786|gb|EEQ79311.1| Rrf2 family protein [Staphylococcus warneri L37603] Length = 140 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PA++IT D+++ E E S + + +A Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL + +++ L + + + + Sbjct: 113 DVLDKTTLQYLAEYKETDQNL 133 >gi|168178952|ref|ZP_02613616.1| RRF2 family protein [Clostridium botulinum NCTC 2916] gi|170756920|ref|YP_001783003.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|226950815|ref|YP_002805906.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto] gi|169122132|gb|ACA45968.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|182670202|gb|EDT82178.1| RRF2 family protein [Clostridium botulinum NCTC 2916] gi|226841169|gb|ACO83835.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto] Length = 133 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + I+ LD++ A E + +C C + V+ A Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSP------SECVIKKVMLSAEKKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I LV+ Sbjct: 115 EELRNQKISDLVKK 128 >gi|150016622|ref|YP_001308876.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903087|gb|ABR33920.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 142 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 5/140 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ I + + I+E ISE +L +I L K GI+ +G Sbjct: 1 MKISTKGRYGLRALIDICIFSVSEMVTVKSISERQGISERYLEQIFSSLRKGGIINAKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + + TI D++ E + + + ++ N Sbjct: 61 AQGGYFLAKSSREFTIGDILNVLEGDLLLIDIENDENEIENFMSE----NLWNVINNKII 116 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + ++E LV + K Sbjct: 117 NFFNSITLEDLVNDYKKYNK 136 >gi|326384426|ref|ZP_08206106.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196771|gb|EGD53965.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 176 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD G+RV+M A + + ++A+ +S + K++ L + G+V + RGR Sbjct: 1 MQLTRFTDIGLRVVMALAADPEASHTSRRLADDLDLSYTHVAKVVSRLAELGVVHSSRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ + + + + + E V +C CPL +C L L A AF+D Sbjct: 61 SGGLGITELGPRAGVGWLARHLEGDGPVVDC--EGPTPCPLRSACRLRGALAAAQEAFYD 118 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L + +++ L+ + + + + Sbjct: 119 SLDRLTVQDLIADPTGARLL 138 >gi|256371980|ref|YP_003109804.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256008564|gb|ACU54131.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium ferrooxidans DSM 10331] Length = 151 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY R L+ A+H D P ++++A + + +L +IL L AG+V + RG Sbjct: 1 MRVSTRGDYAARALLSLALHPSDQPTSVAELARRTGLPQPYLEQILLTLKGAGLVRSKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG L R A++IT+ ++ A + V + H+ C G C L V + + Sbjct: 61 AGGGYTLGRSAEEITLAQIIAAVDGPITVGDFKEPHEDGACDHEGQCALLEVWAEVGHHM 120 Query: 119 FDVLTQYSIECLVRNRSSIK-KIFNA 143 D L Y++ +VR ++ + A Sbjct: 121 ADHLRSYTLAEMVRRARGLRGDVLGA 146 >gi|333023880|ref|ZP_08451944.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332743732|gb|EGJ74173.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 151 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L A H ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALAELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I++LDVV+A + A + P + GL ++ R D Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYP-GPAAGLPALWRTLEERARD 119 Query: 121 VLTQYSIECLVRNRSSIK 138 +L + S+ L R + + Sbjct: 120 LLGEVSLAALAREAPTTR 137 >gi|325266572|ref|ZP_08133249.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394] gi|324982015|gb|EGC17650.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394] Length = 157 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT++TDY +RVL+Y AI+N+ I++IA+ IS+ L K++ LVK G + +VRG+ Sbjct: 11 MHLTQQTDYALRVLIYTAINNEGLVNIAEIAKTYDISKSHLMKVVTALVKGGFLHSVRGK 70 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL + +QI + DVV+ TE +AECF +C + C L ++L L F Sbjct: 71 GGGLRLGKEPEQIRVGDVVRLTE-PMVIAECFG-ENNECIISPHCRLANILNSGLKLFLM 128 Query: 121 VLTQYSIECLVRNRSSIKKIF 141 L Y++ L+ + +KI Sbjct: 129 HLDNYTLADLL--NAGTQKIL 147 >gi|157149110|ref|YP_001456429.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895] gi|157086315|gb|ABV15993.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895] Length = 167 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI LM + +IA+ + +L KI L KAG+V ++ G+ Sbjct: 5 SSGVEYGIHSLMCMVDSKGDARDMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG +L RPA+ IT+LDVV A + + EC F G CG+ SV+ Sbjct: 65 GGFQLARPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPAWACEGICGVRSVMD 124 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L Q++I L R Sbjct: 125 MAQQRMEEALGQHTILDLARK 145 >gi|300113345|ref|YP_003759920.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539282|gb|ADJ27599.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 158 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDY I ++ A+ + + ++ + + KIL+ L +AG++ + RG + Sbjct: 3 RMSKMTDYAIVLMTRLAMDPKGQHAATDLSAQVEMPLPTVSKILKQLARAGLLVSSRGAQ 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + + I++ +++ E + EC ++ +C C + + A + Sbjct: 63 GGYSLGKSPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCATRAHWEQINQAVYGA 121 Query: 122 LTQYSIECLVR 132 L + + +V+ Sbjct: 122 LNEIKLSDMVQ 132 >gi|325919608|ref|ZP_08181620.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri ATCC 19865] gi|325549944|gb|EGD20786.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri ATCC 19865] Length = 152 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARGDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A +IT++++V+A E + EC H C + +CG+ S R + D Sbjct: 63 GGYRLARAASEITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 122 LRRVTLAQMLQ 132 >gi|23015106|ref|ZP_00054893.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 128 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TD+ IR+L+Y + H D + ++AE IS L KI++ L G ++TVRG+ Sbjct: 1 MKITQFTDFSIRLLIYLSRHRDRVVTVREVAEYYGISAEHLKKIVRSLADLGHLQTVRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R I I + + +E+ + C CP+ C L ++ AL AF Sbjct: 61 HGGLRLAREPRDIDIGRLFRQ-QENLALLPCH-EPCDGCPI-DDCRLRGLVDNALAAFLA 117 Query: 121 VLTQYSIECLV 131 V S+ ++ Sbjct: 118 VFDGKSLADVI 128 >gi|291287793|ref|YP_003504609.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290884953|gb|ADD68653.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 134 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ +DY IR L++ A + S++A C I + FL KILQ L K+ I+ + RG Sbjct: 1 MKVTRASDYAIRALIHMAHKPLGTTFMRSELAAECEIPDSFLGKILQNLAKSEILSSERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG ++ + +IT+ D++ A E + +C C LV SC ++ + Sbjct: 61 KKGGFKVAKNPAEITVYDIISAIEGDIALNKCIFDEDF-CSLVHSCTAHNMWSDIQDNLV 119 Query: 120 DVLTQYSIECLVRN 133 ++L YS+ L Sbjct: 120 EMLKSYSLAKLTEK 133 >gi|115372474|ref|ZP_01459782.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1] gi|115370436|gb|EAU69363.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1] Length = 158 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDYG+ +L A ++AE + + K+L+ L AG++ + RG Sbjct: 3 RMSKMTDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAM 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA I + V+ A E + C + C L C + R A Sbjct: 63 GGYGLARPAAAIPLTQVISALEGPVAITACVQHTDGEPSCELESVCRIRGHWRVINQAIQ 122 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 + L + ++ L ++++ Sbjct: 123 EALGRLTLADLCAPELRVERLVG 145 >gi|224823961|ref|ZP_03697069.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] gi|224603380|gb|EEG09555.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum 2002] Length = 156 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ TDYG ++ + A + +++A A ++ KIL+ L + ++ ++RG Sbjct: 3 RLSRLTDYGTVIMAHMAREPGHVYSAAELAGAVGVALPTASKILKTLARKALLHSLRGAH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP +I+I V+ A E F V EC + + CP +C L ++ A Sbjct: 63 GGYLLARPPREISIAQVIDALEGPFGVTECSVAAGL-CPQENACALRRHWQRIDRALRQT 121 Query: 122 LTQYSIECLVR 132 L ++E + + Sbjct: 122 LDGLTLEDMTQ 132 >gi|16126861|ref|NP_421425.1| RrF2 family protein [Caulobacter crescentus CB15] gi|221235644|ref|YP_002518081.1| Rrf2 family protein [Caulobacter crescentus NA1000] gi|13424201|gb|AAK24593.1| RrF2 family protein [Caulobacter crescentus CB15] gi|220964817|gb|ACL96173.1| Rrf2 family protein [Caulobacter crescentus NA1000] Length = 143 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ Y +R ++ A D ++AE FL IL L + G+V + RG+ G Sbjct: 2 LSQKARYALRAMIELA-RADTQVTAGELAERADAPRKFLEAILLSLSREGLVISRRGKFG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118 G L R AD I+ ++++ + + C + DC + +C L L +A +A Sbjct: 61 GYVLARDADAISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120 Query: 119 FDVLTQYSIEC 129 VL YS+ Sbjct: 121 AAVLEGYSLAD 131 >gi|257066428|ref|YP_003152684.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii DSM 20548] gi|256798308|gb|ACV28963.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii DSM 20548] Length = 133 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S++++ +SE +L ++++ L G++ + RG Sbjct: 1 MKLSTRGRYGLRAMCYLASNKDRGYISVSEMSDKLNLSENYLEQLIRLLKNDGLITSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG ++ R D+I++ +V++ E + +++C + C C V + Sbjct: 61 PKGGYKITRDLDEISVGEVLRVLEGNITMSDCVSGDHF-CD--DKCDAYFVFDRIDKVIN 117 Query: 120 DVLTQYSIECLVRNR 134 + + S++ ++ Sbjct: 118 EAVDSISLKNMINQE 132 >gi|119476390|ref|ZP_01616741.1| iron-sulfur cluster assembly transcription factor IscR [marine gamma proteobacterium HTCC2143] gi|119450254|gb|EAW31489.1| iron-sulfur cluster assembly transcription factor IscR [marine gamma proteobacterium HTCC2143] Length = 174 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ AIH P ++ I+ IS +L ++ L + +V +VRG Sbjct: 17 MRLTTKGRYAVTAMLDLAIHVGAGPISLADISSRQGISLSYLEQLFAKLRRGELVSSVRG 76 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I + +V A E C +C + Sbjct: 77 PGGGYLLSRGGADIFVSQIVDAVNEKIDATGCGGGGDCQ--DGETCLTHHLWCDLSEQIH 134 Query: 120 DVLTQYSIECLVRNRS 135 L S+ LV R Sbjct: 135 SFLGGISLASLVEKRE 150 >gi|34763186|ref|ZP_00144152.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742213|ref|ZP_04572694.1| rrf2 family protein [Fusobacterium sp. 4_1_13] gi|256845486|ref|ZP_05550944.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_36A2] gi|294785208|ref|ZP_06750496.1| RRF2 family protein [Fusobacterium sp. 3_1_27] gi|27887155|gb|EAA24260.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429861|gb|EEO40073.1| rrf2 family protein [Fusobacterium sp. 4_1_13] gi|256719045|gb|EEU32600.1| iron-sulfur cluster assembly transcription factor IscR [Fusobacterium sp. 3_1_36A2] gi|294486922|gb|EFG34284.1| RRF2 family protein [Fusobacterium sp. 3_1_27] Length = 141 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A + + RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L +I + + + ++ V +C K CG T + K N Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L++ S++ + N I Sbjct: 121 AMTKILSETSLQDFINNGKRI 141 >gi|320105376|ref|YP_004180966.1| BadM/Rrf2 family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319923897|gb|ADV80972.1| transcriptional regulator, BadM/Rrf2 family [Terriglobus saanensis SP1PR4] Length = 164 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 12/142 (8%) Query: 2 HLTKRTDYGIRVLMYCAIH-----------NDYPNRISQIAEACCISELFLFKILQPLVK 50 LTK+ DYG+ L Y A + IAEA I L KILQ L + Sbjct: 3 RLTKKADYGLMALKYLAEQAVAAAEHPESVPAHAQSAKDIAEAYHIPPQLLAKILQTLAR 62 Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110 AGI+ + G GG L R A +IT +V++A + F+ C H C L G C + Sbjct: 63 AGILVSHAGTNGGYSLARSATEITAFEVIRAIDGPLFITSCITIHGT-CDLAGHCTIKEP 121 Query: 111 LRKALNAFFDVLTQYSIECLVR 132 LRK ++ D+L+ I LV Sbjct: 122 LRKVNDSIKDLLSGIRISDLVD 143 >gi|299139059|ref|ZP_07032235.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX8] gi|298598739|gb|EFI54901.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX8] Length = 152 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LTK+ DYG+ L Y A + + IAEA I L KILQ L K+G++ + G Sbjct: 3 RLTKKADYGLMALKYLAEQSTNGAQSAKDIAEAYHIPPQLLAKILQTLAKSGLLVSHAGT 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R A I+ +V++A + F+ C H C L G+C + LRK ++ + Sbjct: 63 NGGYALARSAHDISAFEVIRAIDGPLFITSCITIHGT-CDLHGTCTIKEPLRKVNDSIKE 121 Query: 121 VLTQYSIECLVR 132 +L+ + L+ Sbjct: 122 LLSGIRVSDLIE 133 >gi|217967934|ref|YP_002353440.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217337033|gb|ACK42826.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum DSM 6724] Length = 144 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 2/142 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + +YG+R +++ + +SQI++ IS FL +++ L +A +VE+ +G Sbjct: 3 RVSAKLEYGLRAMIFLGKNYPHEKLTLSQISQEENISREFLAQLMSELRRANLVESYKGI 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +P +IT+ ++ +A E + +C C SC ++ D Sbjct: 63 TGGYTLTKPPHEITLKEIFEALEGPIQIIDCIHIDN-KCNKERSCYSKNIWIFIEKKIID 121 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 +L ++E L+ ++I Sbjct: 122 LLGSLTLEDLINGTIRKEEILT 143 >gi|303327401|ref|ZP_07357842.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3] gi|302862341|gb|EFL85274.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3] Length = 148 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+ A D ++ Q+A IS +L +I++ L GI+ VRG Sbjct: 3 MRFSTRTRYGLRFLLRLAAQPKDSLLQLGQVAREENISSGYLEQIVRALKPLGILRAVRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + +I + DV E C + C C ++ Sbjct: 63 SGGGYALAKDPSEINMEDVFLHLEGEIAPVRCLTKGRC-CQREQQCSTRGFWKELDGHIR 121 Query: 120 DVLTQYSIECLVRNRS 135 L Q+++ ++ + Sbjct: 122 GFLQQHTLREIIESEK 137 >gi|296392911|ref|YP_003657795.1| BadM/Rrf2 family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180058|gb|ADG96964.1| transcriptional regulator, BadM/Rrf2 family [Segniliparus rotundus DSM 44985] Length = 151 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD G+RV ++ A + + +AE + K++ L G+VE+ RG Sbjct: 1 MQLTKFTDLGLRVTMLLAAAPSGRQLSTAHVAEQMRVPYTHAAKVVARLAGLGVVESARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL A +I + + E V EC CPL C L LR+A AFF Sbjct: 61 RAGGLRLAESASSRSIGWIARRLEGDGEVVEC--EGANPCPLREGCRLRGALRQAQEAFF 118 Query: 120 DVLTQYSIECLVRNRSS 136 VL +++ ++R + Sbjct: 119 HVLDGWTVAEMIRTPTE 135 >gi|254282474|ref|ZP_04957442.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR51-B] gi|219678677|gb|EED35026.1| iron-sulfur cluster assembly transcription factor IscR [gamma proteobacterium NOR51-B] Length = 150 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+ N P ++ I+E IS +L ++ L ++G+V++VRG GG L R A + Sbjct: 1 MLDLALRNGQGPTALAGISERQDISLSYLEQLFSQLRRSGLVKSVRGPGGGYHLGRDAGE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I++ V++A ES C K DC +C + + D L S+E LV Sbjct: 61 ISVAAVIQAVNESTDTTRC--RGKGDCQKGDTCLTHHLWMNLSDQIHDFLEAISLEDLVE 118 Query: 133 NRS 135 Sbjct: 119 TEE 121 >gi|319782762|ref|YP_004142238.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168650|gb|ADV12188.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 149 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ + + ++ IA A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLSGLPAGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I I VV+ + C + DC +C + ++ + A Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL S+ + Sbjct: 121 IAEVLDNRSLAAM 133 >gi|154502552|ref|ZP_02039612.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149] gi|153796744|gb|EDN79164.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149] Length = 146 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YG+R L+ IH N+ P + Q+A IS +L ++ L KAGIV +V+G Sbjct: 1 MKVSTRGRYGLRALVDMTIHSNNAPVSLVQVANRQKISLNYLEQVFGTLRKAGIVVSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R A+ IT+ +V++A E +F + + + D L V + Sbjct: 61 AGGGYKLARDAESITVKEVLEALEGTFSIIDRIPGEEQDAVQEAIEKL--VWSRIDETVN 118 Query: 120 DVLTQYSIECLVRN-RSSIKKIFNAG 144 L Q +++ L R +++ NAG Sbjct: 119 TFLEQKTLKMLADEYREKLEQ--NAG 142 >gi|28198602|ref|NP_778916.1| hypothetical protein PD0694 [Xylella fastidiosa Temecula1] gi|71897700|ref|ZP_00679945.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|182681285|ref|YP_001829445.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa M23] gi|28056686|gb|AAO28565.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|71732603|gb|EAO34656.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1] gi|182631395|gb|ACB92171.1| transcriptional regulator, BadM/Rrf2 family [Xylella fastidiosa M23] gi|307579736|gb|ADN63705.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 153 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A H +++AE + + KIL+PL +AG+V RG Sbjct: 3 RVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVAGRRGAY 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R +IT++ +V+A E + EC H C + CG+ S + Sbjct: 63 GGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRSNWQLINTLIAQA 121 Query: 122 LTQYSIECLVR 132 L ++ ++ Sbjct: 122 LRSITLAQMLA 132 >gi|75763854|ref|ZP_00743502.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897792|ref|YP_002446203.1| rrf2 family protein [Bacillus cereus G9842] gi|228901306|ref|ZP_04065501.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228965709|ref|ZP_04126789.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|74488661|gb|EAO52229.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543991|gb|ACK96385.1| rrf2 family protein [Bacillus cereus G9842] gi|228793968|gb|EEM41491.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858335|gb|EEN02800.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 133 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVYQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + +C K C + + A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPG------CLINEAMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAKK 128 >gi|220904115|ref|YP_002479427.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868414|gb|ACL48749.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 138 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ +T Y R+L+Y A + + P S +A IS F+ +IL+ L AGI +VRG Sbjct: 1 MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +++T +V E ++ C C +C + + Sbjct: 61 AKGGHVLLRKPEELTFGCIVNLMEGGIELSGCL-EKPGHCSRFDACEVRKAWESLQSTLD 119 Query: 120 DVLTQYSIECLVRN 133 V ++ L+ + Sbjct: 120 GVFESITLRDLMHD 133 >gi|94263797|ref|ZP_01287603.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1] gi|93455808|gb|EAT05975.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1] Length = 131 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R L Y + + +IA I FL KI + L AG+V RG Sbjct: 1 MQITRETDYALRCLYYLVRRPEQVCMVDEIAAEMEIPRSFLAKIARKLAAAGLVVAHRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R + I+I +V+ A E + C K C C L V Sbjct: 61 GGGFMLIRKPETISIHEVICAIEGEVALNICTGEEK-RCQRSDHCPLHPVWVNLRRDVEA 119 Query: 121 VLTQYSIECLV 131 +L + L+ Sbjct: 120 LLQARNFAELL 130 >gi|255533630|ref|YP_003094002.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM 2366] gi|255346614|gb|ACU05940.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM 2366] Length = 145 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ L+ + + P +I ++AE I FL +IL + AG + + +G Sbjct: 2 LSKKTKYAIKALVALGKNRENPPMQIVRLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + ++I + D+++ T+ + C F +C +CG+ +A Sbjct: 62 GGYSLNKEPNEIYLADILRITDGPIAMVPCASLKFYRKCDECHDEVTCGIRKTFIDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL Q +I ++ + Sbjct: 122 TLKVLAQTTIADVIARETD 140 >gi|228959004|ref|ZP_04120705.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229046468|ref|ZP_04192123.1| Transcriptional regulator [Bacillus cereus AH676] gi|229145347|ref|ZP_04273736.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|229190868|ref|ZP_04317859.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|296503312|ref|YP_003665012.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|228592536|gb|EEK50364.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228638186|gb|EEK94627.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228724830|gb|EEL76132.1| Transcriptional regulator [Bacillus cereus AH676] gi|228800665|gb|EEM47581.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296324364|gb|ADH07292.1| RRF2 family protein [Bacillus thuringiensis BMB171] Length = 133 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTILFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + EC K C + V+ A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAKK 128 >gi|282849798|ref|ZP_06259182.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|282580735|gb|EFB86134.1| Rrf2 family protein [Veillonella parvula ATCC 17745] Length = 149 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ A D P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAAKLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 + GG RL + + TI++++ ATEES + D + N Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE--RTVGFWAGLQNYI 118 Query: 119 FDVLTQYSIECLVR 132 D L +++ ++ Sbjct: 119 HDYLENVTLQDVID 132 >gi|302039295|ref|YP_003799617.1| putative transcription factor IscR [Candidatus Nitrospira defluvii] gi|300607359|emb|CBK43692.1| putative Transcription factor IscR [Candidatus Nitrospira defluvii] Length = 159 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L+K+ DYG+ L + A + +IAE I L K+LQ L K+GI+E Sbjct: 3 KLSKKADYGLMALQHIASNQYGDVAQARVVNTKEIAEEYHIPVELLAKVLQTLSKSGIIE 62 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKA 114 + G +GG L + +ITI V+++ E + +C D C C + + L K Sbjct: 63 SHNGPKGGYLLGKNPREITIAHVLESLEGPLGIMDCSHEKDGDACMQREHCNIRTPLLKI 122 Query: 115 LNAFFDVLTQYSIECLV 131 ++ + +L +++ ++ Sbjct: 123 QSSIYQLLNNMTLQDMM 139 >gi|283835886|ref|ZP_06355627.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae ATCC 29220] gi|291068057|gb|EFE06166.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae ATCC 29220] Length = 167 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI LM + +IAE + +L KI L KAG+V ++ G+ Sbjct: 5 SSGVEYGIHSLMCMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG +L +PA+ IT+LDVV A + + EC F + G CG+ SV+ Sbjct: 65 GGFQLVKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPEWACEGICGVRSVMD 124 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L Q++I L R Sbjct: 125 MAQQRMEEALGQHTILDLARK 145 >gi|19704551|ref|NP_604113.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328430|ref|ZP_06870956.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714837|gb|AAL95412.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154504|gb|EFG95296.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 143 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A + + RI +I+E IS +L +IL L I+E R Sbjct: 1 MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L +I + + + ++ V +C K CG T + K N Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCSEEGCGDTCIWSKLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +L++ S++ + N I++ Sbjct: 121 AMTKILSETSLQDFINNGKRIQE 143 >gi|298290810|ref|YP_003692749.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296927321|gb|ADH88130.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 149 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + YG++ ++Y A I +IA A I + FL IL L AG++ + +G Sbjct: 2 LTNKGKYGLKAMLYLARIEPGSSAMGQEIATANNIPKKFLDAILLELRNAGMLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I I +++ + C + DC + +C + + K +A Sbjct: 62 GGYALAKTPREIRIGHIIRTLDGPLAPISCASKSAYVPCQDCEDLATCSVRITMSKVRDA 121 Query: 118 FFDVLTQYSIECLV 131 ++L S++ ++ Sbjct: 122 MSEILDGMSLQDMI 135 >gi|257065352|ref|YP_003145024.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256793005|gb|ACV23675.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 133 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R++ A + P + +AE IS +L ++ +PLV + ++ + RG Sbjct: 1 MLVSTKGRYAMRLMTDVARYQCLGPVPLRDVAERENISVKYLEQLARPLVHSDLLHSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL RPA +I D+++A E + C + DCP C + Sbjct: 61 KGGGYRLTRPASEIKAGDILRAAEGTTIPVACNGLLE-DCPRTTECASINFWVGLDRVIE 119 Query: 120 DVLTQYSIECLV 131 D + ++ ++ Sbjct: 120 DYVDAVTLADII 131 >gi|237740315|ref|ZP_04570796.1| rrf2 family protein [Fusobacterium sp. 2_1_31] gi|262068259|ref|ZP_06027871.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693] gi|229422332|gb|EEO37379.1| rrf2 family protein [Fusobacterium sp. 2_1_31] gi|291377997|gb|EFE85515.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693] Length = 141 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKAL 115 G GG +L QI + + K ++ V +C + + +C +CG T + + Sbjct: 61 GPTGGYKLTLKPSQINLYTIYKILDDEERVIDCNENAEGKAHNC-NEEACGETCIWSRLD 119 Query: 116 NAFFDVLTQYSIECLVRNRSSI 137 NA +L++ S+E ++N I Sbjct: 120 NAMTKILSETSLEDFIKNGKKI 141 >gi|330466710|ref|YP_004404453.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809681|gb|AEB43853.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora maris AB-18-032] Length = 146 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +R+ M + + ++A+ + + K++Q L G++ T+RGR Sbjct: 1 MKLNRSTDMAMRIAM-LTAASGRRTTVDELAQRLALPRNHVAKVVQRLQHLGVLVTIRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV T+ VV+A E V +C CPL +C L LR+A AF Sbjct: 60 SGGVAFAADGATYTVGQVVRAFEGDGEVVDC---EAPACPLRAACRLRIELRRAQEAFLA 116 Query: 121 VLTQYSIECLVRNRSS 136 VL + S+ LV + + Sbjct: 117 VLDRVSLADLVDSPTG 132 >gi|313497210|gb|ADR58576.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 153 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 3/126 (2%) Query: 11 IRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG GG +L R Sbjct: 1 MTAMLDLALHAKNGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRG 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 + I + V+ A ES C DC +C + + L+ S+ Sbjct: 61 METIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIHEFLSGISLAD 118 Query: 130 LVRNRS 135 LV+ R Sbjct: 119 LVKRRD 124 >gi|190893190|ref|YP_001979732.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190698469|gb|ACE92554.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 154 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVR 132 +L ++E V Sbjct: 122 IAAILDNMTLEQFVA 136 >gi|332716226|ref|YP_004443692.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325062911|gb|ADY66601.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 149 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 5/147 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + +++IA I + FL IL L +GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSKMPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 +L ++ V + AG Sbjct: 122 IATILDNMTLAQFVAKGGQDAQFIPAG 148 >gi|86741718|ref|YP_482118.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3] gi|86568580|gb|ABD12389.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3] Length = 143 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHLT+ TD +R LM A D + +++A + + KI+Q L + +V TVRGR Sbjct: 1 MHLTQSTDLALRALMLTATREDR-LTVRDLSKALDVPLTHMAKIVQRLQRLDLVVTVRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L A Q+T+ +V+A E + C CPL +C L +LR+A F Sbjct: 60 TGGVLLAPGATQVTVGHIVRALEGTDEFVSC---DGPPCPLRCACRLRPLLRRAQENFLV 116 Query: 121 VLTQYSIECLVRNRSS 136 L + ++ L + Sbjct: 117 TLDEVTLAELTDEPAG 132 >gi|296131265|ref|YP_003638515.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena DSM 20109] gi|296023080|gb|ADG76316.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena DSM 20109] Length = 152 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DY +R A +A I FL +I+ L + G+V +VRG Sbjct: 1 MRVSAKADYAVRACAELASRPGGESVPSEVLAAGQDIPTSFLERIMGDLRRGGVVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RPAD+IT+ DVV+A + + + GL V + Sbjct: 61 RSGGYLLARPADEITVADVVRAVDGPLVTVRDVRPPGLTYEGSAA-GLLDVWVALRASVR 119 Query: 120 DVLTQYSIECLVRN 133 DVL +++ LV Sbjct: 120 DVLDVVTLKDLVDR 133 >gi|302536831|ref|ZP_07289173.1| transcriptional regulator [Streptomyces sp. C] gi|302445726|gb|EFL17542.1| transcriptional regulator [Streptomyces sp. C] Length = 152 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ TD +RVLM A+ + ++A + K++ L G+VE RGR Sbjct: 4 MRLTRFTDLALRVLMRLAVEDTDLPTTREVAATMEVPYTHTAKVVARLQHLGLVEARRGR 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ VV+ E + V +C CPL G+C L LR+A AFF Sbjct: 64 GGGLALTAAGRTASVGGVVRELEGAGDVVDC--DGASPCPLRGACVLRGALRRAQEAFFA 121 Query: 121 VLTQYSIECLVRNRSS 136 L ++ LV + Sbjct: 122 ALDPLTVNELVAAPTG 137 >gi|328544668|ref|YP_004304777.1| Rhizobial iron transcriptional regulator protein [polymorphum gilvum SL003B-26A1] gi|326414410|gb|ADZ71473.1| Rhizobial iron transcriptional regulator protein [Polymorphum gilvum SL003B-26A1] Length = 146 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+RTD +R+L++ A+H + +I + + +Q L + G + + GR Sbjct: 1 MRFTERTDIAVRLLLFLALHKGAKLSVDEIVDRYLGHRSQVVAAIQDLRRGGYIGSSPGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GGV L R A +IT+ ++V+ E F + CF K C + C L +AL +FF Sbjct: 61 SGGVWLVRSAHEITLAEIVRMFETDFHLTRCFKDGVKARCLIYDVCVFKQALERALGSFF 120 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 VL + +I L+ + + ++ G Sbjct: 121 AVLEETTIADLIEDEGRMLQVMEMG 145 >gi|302388919|ref|YP_003824740.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] gi|302199547|gb|ADL07117.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter oceani DSM 16646] Length = 135 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R +++ + + IAE I F+ KIL+ L +AGIV++ RG Sbjct: 1 MKLNQATDYAFRAVLHLSKLPPGEVVEARVIAEQEHIPMRFMLKILRLLTQAGIVKSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L + IT+ DVV+A E ++ C A + + C + L Sbjct: 61 VGGGYALAKMPRDITMRDVVEAVEGPVYINRCLIAPEECNKRSTAKCSIHKALFSIQQTI 120 Query: 119 FDVLTQYSIECLVRN 133 D L +Y+ E L +N Sbjct: 121 NDKLEEYNFEILSKN 135 >gi|218780199|ref|YP_002431517.1| BadM/Rrf2 family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761583|gb|ACL04049.1| transcriptional regulator, BadM/Rrf2 family [Desulfatibacillum alkenivorans AK-01] Length = 144 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +YG+R ++Y A + ++A I + FL KI Q L AGIVE ++G Sbjct: 1 MRLTRAGEYGVRCILYLAGCPRGEVVKKKEVALNMDIPDQFLSKIAQQLAVAGIVEIIQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG+RL R A +++LDVV+A F+ +C + C +C + V KA Sbjct: 61 SRGGLRLARDAKDVSLLDVVEAITGEIFLNDCVSDPN-SCRNQPTCSVHRVWSKARMQLR 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + L + LV ++K Sbjct: 120 ETLGLATFAGLVEEGHCLQK 139 >gi|332188678|ref|ZP_08390393.1| rrf2 family protein [Sphingomonas sp. S17] gi|332011295|gb|EGI53385.1| rrf2 family protein [Sphingomonas sp. S17] Length = 143 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT+R+ Y +R +++ A P +++IA + FL IL L A ++++ RG+ Sbjct: 2 LTQRSRYALRAMLFLAEMPPAGPPTSMTRIATEANVPRKFLELILADLKGAQLLDSQRGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116 GG RL R A I++ D+++ E + C + DC C + + + + Sbjct: 62 MGGYRLARAAHLISLGDIIRTIEGPLALVPCVSRTAYRPCNDCKSEADCAIRHAMMRVRD 121 Query: 117 AFFDVLTQYSIEC 129 +L S+ Sbjct: 122 ETARILDGTSLAD 134 >gi|251772796|gb|EES53357.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum ferrodiazotrophum] Length = 157 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 1/143 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LTK+ DY + L A + + IA I L K++Q L KAG++++ Sbjct: 3 KLTKKVDYALLALNLMAQAREGETSNVRDIAGIYRIPPEILAKVMQKLSKAGLIQSHNAP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L PA++I++L V+ A E + C DC C + S L + N Sbjct: 63 KGGYSLKIPAEKISVLKVLTAVEGPVGIVSCSDGSDKDCQQRDQCDIRSPLERLQNNILW 122 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L SI L + + +K + + Sbjct: 123 FLEALSIRELGQEPTVMKGVTDG 145 >gi|167647686|ref|YP_001685349.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167350116|gb|ABZ72851.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 146 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ Y +R ++ A + ++A FL IL L + G+V + RG+ G Sbjct: 2 LSQKARYALRAMIELARESGQ-VTAGELAVRADAPRKFLEAILLTLARQGLVTSRRGKFG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118 G L R DQI+ ++++ + + C + DC + +C L L +A +A Sbjct: 61 GYLLGRGPDQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120 Query: 119 FDVLTQYSIECLVR 132 VL YS+ V Sbjct: 121 AAVLEGYSLSDAVN 134 >gi|30262741|ref|NP_845118.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47528060|ref|YP_019409.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185589|ref|YP_028841.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|118478131|ref|YP_895282.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165868776|ref|ZP_02213436.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167632402|ref|ZP_02390729.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167637771|ref|ZP_02396050.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170685225|ref|ZP_02876449.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|170704801|ref|ZP_02895267.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|177649735|ref|ZP_02932737.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190565557|ref|ZP_03018477.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196043481|ref|ZP_03110719.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225864745|ref|YP_002750123.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227814419|ref|YP_002814428.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229604122|ref|YP_002867050.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254685333|ref|ZP_05149193.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254722741|ref|ZP_05184529.1| rrf2 family protein [Bacillus anthracis str. A1055] gi|254737789|ref|ZP_05195492.1| rrf2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254743037|ref|ZP_05200722.1| rrf2 family protein [Bacillus anthracis str. Kruger B] gi|254752103|ref|ZP_05204140.1| rrf2 family protein [Bacillus anthracis str. Vollum] gi|254760624|ref|ZP_05212648.1| rrf2 family protein [Bacillus anthracis str. Australia 94] gi|30257373|gb|AAP26604.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47503208|gb|AAT31884.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179516|gb|AAT54892.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|118417356|gb|ABK85775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] gi|164715502|gb|EDR21019.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167514320|gb|EDR89687.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167532700|gb|EDR95336.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170130602|gb|EDS99463.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|170670585|gb|EDT21324.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172084809|gb|EDT69867.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190563584|gb|EDV17549.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196025790|gb|EDX64459.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225787545|gb|ACO27762.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227004844|gb|ACP14587.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229268530|gb|ACQ50167.1| rrf2 family protein [Bacillus anthracis str. A0248] Length = 133 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I+ LD++ A E + EC K C + + A Sbjct: 61 PKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPG------CLINEAMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAKK 128 >gi|294782591|ref|ZP_06747917.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA] gi|294481232|gb|EFG29007.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA] Length = 141 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKAL 115 G GG +L +QI + + K ++ V +C + + +C +CG T + + Sbjct: 61 GPTGGYKLTLKPNQINLYTIYKILDDEERVIDCNENAEGKAHNC-NEEACGETCIWSRLD 119 Query: 116 NAFFDVLTQYSIECLVRNRSSI 137 NA +L++ S+E ++N I Sbjct: 120 NAMTKILSETSLEDFIKNGKKI 141 >gi|206889263|ref|YP_002249119.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741201|gb|ACI20258.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 164 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T+ TDY IR ++Y + DY R +I++ I + FL KIL+ L K G+V+ RG Sbjct: 31 QITRETDYAIRTVLYLSGKKDYSARAEEISQQMQIPKSFLRKILKQLEKVGLVQLKRGVS 90 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG++L R +IT+ DV+ A E++ + C + KI C L+ C + V K Sbjct: 91 GGIKLLREPVEITLFDVIVAMEKAVALNRCVINDKI-CGLISHCPVHPVWFKVRERLIQA 149 Query: 122 LTQYSIECLVRNRSS 136 L + + L + +S Sbjct: 150 LQEIKFQELAKGAAS 164 >gi|328955720|ref|YP_004373053.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] gi|328456044|gb|AEB07238.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] Length = 150 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y +R+++Y A + +IA IS+ +L ++++PL++AG++++VR Sbjct: 1 MLISSKGRYALRLMIYIAAFGGDQGRVALREIAACEDISQKYLEQLVRPLMRAGLLKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+RGG L +PA+++ D+++ E + C C C Sbjct: 61 GKRGGYILGKPAEEVRAGDILRVAEGTTAPVACEGLEGA-CERADLCSTVRFWTGLDAVI 119 Query: 119 FDVLTQYSIECLVRNRS 135 + ++ L R Sbjct: 120 ESYVDGVTLAELARAPD 136 >gi|119505399|ref|ZP_01627473.1| rrf2 family protein [marine gamma proteobacterium HTCC2080] gi|119458854|gb|EAW39955.1| rrf2 family protein [marine gamma proteobacterium HTCC2080] Length = 138 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ AI+ + P ++ I+ IS +L ++ L + +V +VRG GG RL R Sbjct: 1 MLDLAINGEEKPVSLADISGRQEISLSYLEQLFAKLRREALVTSVRGPGGGYRLARDRAT 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + + +++ A +ES V C + K +C C + + + L+ S+ LV Sbjct: 61 LFVAEIIDAVDESVDVTNC--NGKGNCHHGEVCLTHDLWQDLSDRIHSFLSGISLADLVD 118 Query: 133 NRSSIKKI 140 NR+ ++ Sbjct: 119 NRAGKARL 126 >gi|260467181|ref|ZP_05813358.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259029034|gb|EEW30333.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 149 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ A + + IA I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLARMPAGQLAFVGDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL RPAD+I I VV+ + C + DC +C + ++ + A Sbjct: 62 GGYRLARPADEIEIGHVVRVLDGPLAPIPCASRTQYQRCEDC-NEATCQVRHLMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL Q S+ + Sbjct: 121 IAEVLDQRSLAEM 133 >gi|167758028|ref|ZP_02430155.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704] gi|167663925|gb|EDS08055.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704] Length = 166 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A++ P ++ +A IS +L ++ L KAG+V +++G Sbjct: 20 MKISTKGRYGLRALVDLAVYSQGEPTALAMVAARQKISLNYLEQVFGQLRKAGLVRSIKG 79 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L +PA IT+ ++++ E F + E +D + L V + Sbjct: 80 PSGGYLLAKPAKDITVKEILEVLEGPFSIVGEDLDRSSLDAMQLAIKSL--VWDEIDARI 137 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + + + ++E LV S + Sbjct: 138 NEFMEKRTLEHLVNEYRSYQD 158 >gi|299822759|ref|ZP_07054645.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816288|gb|EFI83526.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 150 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y A + + ++AE +S +L K+L LVKAG++E+V G Sbjct: 8 MKYSKATNYALHTMVYLAHTTLENTLGVKELAERFQVSSTYLSKVLTTLVKAGLIESVSG 67 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R ++ IT LDVV+A E + + C + C + + +++A Sbjct: 68 VKGGYKLARSSETITFLDVVQAVEGANPLFVC-GMNATPAHNEKICLIENAMKEAEQKME 126 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L +I + R S+K+ Sbjct: 127 ADLATKTIAGVARQMKSLKE 146 >gi|92113358|ref|YP_573286.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796448|gb|ABE58587.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter salexigens DSM 3043] Length = 155 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 1/132 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY V+ A H + + +++A+A + + K L+ LVKAG++E+ RG Sbjct: 3 KLSKLTDYAAVVMAQIARHPEQAHAATELADAVQLPHPTVSKTLKMLVKAGLLESRRGSL 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA IT D++ A E + EC + DC L+ +CG+ ++ A + Sbjct: 63 GGYRLARPAAAITASDIIGAIEGPVAMTEC-SHADGDCDLLATCGVADNWQRVSLAIRTL 121 Query: 122 LTQYSIECLVRN 133 L ++ L + Sbjct: 122 LDSVTLAHLAQE 133 >gi|315918520|ref|ZP_07914760.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059669|ref|ZP_07924154.1| rrf2 family protein [Fusobacterium sp. 3_1_5R] gi|313685345|gb|EFS22180.1| rrf2 family protein [Fusobacterium sp. 3_1_5R] gi|313692395|gb|EFS29230.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563] Length = 148 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R Sbjct: 11 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 70 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG RL +IT+ V ++ V +C H+ C CG T + K Sbjct: 71 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKD-SICGSTCIWSKLDY 129 Query: 117 AFFDVLTQYSIECLVRN 133 A +L+ ++E + N Sbjct: 130 ALTKILSDTTLEDFINN 146 >gi|257453134|ref|ZP_05618433.1| RRF2 family protein [Fusobacterium sp. 3_1_5R] gi|257467390|ref|ZP_05631701.1| RRF2 family protein [Fusobacterium gonidiaformans ATCC 25563] Length = 138 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG RL +IT+ V ++ V +C H+ C CG T + K Sbjct: 61 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKD-SICGSTCIWSKLDY 119 Query: 117 AFFDVLTQYSIECLVRN 133 A +L+ ++E + N Sbjct: 120 ALTKILSDTTLEDFINN 136 >gi|217979263|ref|YP_002363410.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] gi|217504639|gb|ACK52048.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] Length = 144 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 7/141 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + YG++ L++ A+ + P + IA I FL IL L KAGI+ + +G+ G Sbjct: 2 LSNKGKYGLKALIHLAVF-EGPCLAADIAAHNQIPRKFLDAILLELRKAGILNSKKGKGG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118 G L RPAD+IT +++ + C + DCP +C + ++ ++ Sbjct: 61 GYHLARPADKITAGQIIRILDGPLAPIACASRTAYRKCLDCPDEEACAVRDLMLDVRDSM 120 Query: 119 FDVLTQYSIECLVR--NRSSI 137 +L + SI L + NR ++ Sbjct: 121 ALILDRTSIAALSKRGNRDNL 141 >gi|254302940|ref|ZP_04970298.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323132|gb|EDK88382.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 141 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + YG++ L Y A + + RI +I+E IS +L +IL L I+E R Sbjct: 1 MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116 G GG +L +I + + K ++ V +C K CG T + K N Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYKILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 A +L++ S++ + N I Sbjct: 121 AMTKILSETSLQDFINNGKKI 141 >gi|261406703|ref|YP_003242944.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283166|gb|ACX65137.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 161 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 16/148 (10%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K DY + L++ A D+ I +++ +SE +L KI+ L + GIV V G Sbjct: 1 MQFSKSVDYALHALIHLAQSERDHNIGIKELSATLGVSESYLSKIMSKLRQDGIVRAVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---------------ASHKIDCPLVGS 104 GG L +PA QIT L+V++ E + EC + D P Sbjct: 61 VNGGYELAKPARQITFLEVIQVIEGRQQLFECSNLKSQQHRLLTEEKPSDRNEDKPGACV 120 Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVR 132 C + V+ A L + +I+ ++ Sbjct: 121 CLVKQVMDGAERQLNQYLEEQTIQSVLD 148 >gi|29832300|ref|NP_826934.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29609419|dbj|BAC73469.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 152 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ +D P + IA A I FL IL L + G+V + RG Sbjct: 1 MRISARADYAVRAVLELAVREDDGPVKAEAIAAAQDIPHKFLEGILGDLRRGGLVASRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R AD IT+ DV++A + + L + Sbjct: 61 GNGGYRLARAADTITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWVALRANVR 119 Query: 120 DVLTQYSIECLVRN 133 +L ++ + + Sbjct: 120 KILEGVTLADIAAD 133 >gi|170759452|ref|YP_001788696.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406441|gb|ACA54852.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 133 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + I+ LD++ A E + +C C + V+ A Sbjct: 61 ANGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLESH------SECVIKKVMLSAEGKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I LV+ Sbjct: 115 EELKNQKISDLVKK 128 >gi|292490815|ref|YP_003526254.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4] gi|291579410|gb|ADE13867.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4] Length = 163 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDYGI ++ A + + ++ + + KIL+ L +A ++ + RG + Sbjct: 3 RMSKMTDYGIVLMTRLAADPKGQHAAADLSAQVEMPLPTVSKILKQLARAQLLVSSRGAQ 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP + I++ +++ E + EC ++ +C C + A + Sbjct: 63 GGYSLARPPETISVAEIITTLEGPIGLTECISTPG-ECGQESHCSTRVHWERINQAVYGA 121 Query: 122 LTQYSIECLVR 132 L + + +V+ Sbjct: 122 LNEIKLSDMVQ 132 >gi|319892680|ref|YP_004149555.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius HKU10-03] gi|317162376|gb|ADV05919.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius HKU10-03] gi|323464282|gb|ADX76435.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 139 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMIALAKRHGTGCVSLKTIAEENGLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L A +IT D+++ E + E S G + + NA Sbjct: 61 AKGGYELKMSATEITAGDIIRLLEGPLTIVERMESEPP--------GQQQLWLRMRNAVR 112 Query: 120 DVLTQYSIECLV--RNRSSIK 138 +VL Q +++ L +++ +++ Sbjct: 113 EVLDQTTLQSLADYQDKDALE 133 >gi|301065061|ref|ZP_07205404.1| transcriptional regulator, Rrf2 family [delta proteobacterium NaphS2] gi|300440829|gb|EFK05251.1| transcriptional regulator, Rrf2 family [delta proteobacterium NaphS2] Length = 139 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +Y +R ++Y + ++AE I FL KI Q L K G++E +G Sbjct: 1 MRLTRAGEYAVRCVLYLSKKGKGALVSRKEVAEQAVIPSHFLAKIAQELAKVGMIEIRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L ++IT+L VV+ F+ +C K C +C + V +A + Sbjct: 61 AKGGFVLLMDPEEITLLQVVEIVIGEIFLNDCVVRPK-SCDASPNCSVHVVWMRARDQLR 119 Query: 120 DVLTQYSIECLVR 132 D L + L++ Sbjct: 120 DTLGSVTFAELIK 132 >gi|17229573|ref|NP_486121.1| hypothetical protein alr2081 [Nostoc sp. PCC 7120] gi|17131172|dbj|BAB73780.1| alr2081 [Nostoc sp. PCC 7120] Length = 147 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y ++ L+ ++ P + IA+ I +L K+L + +AG+V+++RG Sbjct: 1 MKLTTKGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R +I+I +++A +E+ H S+ ++ Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDETITN---LPRHTPTPAQTEDWVTFSLWQRLNQKLK 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L ++ L + S + Sbjct: 118 EALYSITLADLYYDARSWQASLGE 141 >gi|329895576|ref|ZP_08271072.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088] gi|328922255|gb|EGG29605.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088] Length = 149 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H + P ++ I+ IS +L ++ L K G+V++VRG GG L + + Sbjct: 4 MLDLALHREHGPIPLAGISARQDISLSYLEQLFAQLRKHGLVKSVRGPGGGYYLGKSLEV 63 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I++ DV++A E C + C +C + + D L S+ LV Sbjct: 64 ISVADVIEAVNEDTDATRC--RGRGSCQKGATCLTHHLWSGLSDQIRDFLRNISLADLV- 120 Query: 133 NRSSIKKI 140 R I++I Sbjct: 121 VREEIREI 128 >gi|13471643|ref|NP_103209.1| hypothetical protein mlr1674 [Mesorhizobium loti MAFF303099] gi|14022386|dbj|BAB48995.1| mlr1674 [Mesorhizobium loti MAFF303099] Length = 149 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ + ++ IA A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLSSLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I I VV+ + C + DC +C + ++ + A Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL S+ + Sbjct: 121 IAEVLDNRSLAAM 133 >gi|302548372|ref|ZP_07300714.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653] gi|302465990|gb|EFL29083.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653] Length = 149 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK TD +R +M A+ P QIA + L K+ L G++ET RGR Sbjct: 1 MRLTKSTDLALRAIMRLAVAGAEPCTARQIAGEMRVQYSHLAKVAARLQHLGLIETRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L ++ +V+ E + V +C CPL C L LR+A AFF Sbjct: 61 GGGLVLTETGRTASVGQLVRELEGADEVVDC--EGDTPCPLRQGCRLRMALRQAQEAFFS 118 Query: 121 VLTQYSIECLV 131 L ++ L+ Sbjct: 119 SLDPLTVTDLI 129 >gi|227539117|ref|ZP_03969166.1| rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241067|gb|EEI91082.1| rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 142 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ LM + P +I +IA+ I + FL +IL + AGI+ + +G Sbjct: 2 LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + V++ + + C F +C CG+ NA Sbjct: 62 GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 +L SI L+ + Sbjct: 122 MLQILNDTSIAHLINKEKELN 142 >gi|303228774|ref|ZP_07315592.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-134-V-Col7a] gi|303230469|ref|ZP_07317228.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-049-V-Sch6] gi|302514835|gb|EFL56818.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-049-V-Sch6] gi|302516573|gb|EFL58497.1| putative HTH-type transcriptional regulator CymR [Veillonella atypica ACS-134-V-Col7a] Length = 149 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ A P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLAEQGQGKPVSLRSVAERQGISEKYLEGIVARLGAASLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + + TI++++ ATEES + ++ N Sbjct: 61 KYGGYRLSKKPSEYTIIEILMATEESMAIISSLDEGVSTDDVINE-RTVGFWAGLQNYIH 119 Query: 120 DVLTQYSIECLVR 132 D L +++ ++ Sbjct: 120 DYLESVTLQDVID 132 >gi|168183029|ref|ZP_02617693.1| rrf2 family protein [Clostridium botulinum Bf] gi|237794464|ref|YP_002862016.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] gi|182673737|gb|EDT85698.1| rrf2 family protein [Clostridium botulinum Bf] gi|229263280|gb|ACQ54313.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] Length = 145 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEETVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT ++++A E V E ++ + S + + + Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118 Query: 120 DVLTQYSIECLVR 132 V+ ++E LV Sbjct: 119 KVVDSITLEDLVE 131 >gi|170721542|ref|YP_001749230.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida W619] gi|169759545|gb|ACA72861.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida W619] Length = 179 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 12/145 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L+Y + + +A+ + + +L K+ L +A +V Sbjct: 1 MSLYSAGVEYGIHCLLYLVDERGDTRESSVRDLAQLQGVPQEYLAKVFTKLARAKLVAAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG RL RP+D+IT+LD+V A + + +C F G+C + Sbjct: 61 EGVRGGFRLARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFEGSPPGWATEGTCAIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 +V+ A + L Q +I L R Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145 >gi|146295458|ref|YP_001179229.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409034|gb|ABP66038.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 137 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +R++++ + I+E I + FL KI + L+KAGI+E+ RG+ Sbjct: 1 MRLTQASDYALRIVLHLSKKKGVVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFF 119 GG L + + IT+ DV+ A E + + C G C + + Sbjct: 61 NGGYVLAKNPEDITMKDVILAVEGTLALNRCQIDPSACSKRATGYCAVHKAFSSVMEIVA 120 Query: 120 DVLTQYSIECLVR 132 +Y+ L + Sbjct: 121 KEFEKYNFAELAK 133 >gi|284046839|ref|YP_003397179.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283951060|gb|ADB53804.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 157 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + +YG+R+++ + P + IA A + +L +++ L KA +V + RG Sbjct: 1 MIFSSKAEYGVRLMVELGRQGAEQPISLKAIAAAEQLPLAYLEQVVARLKKAELVRSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVG------SCGLTSV 110 GG L RPA++IT+ +VV A E + ECF + + C V C + Sbjct: 61 AHGGYWLARPAEEITMDEVVLALEGAIAPMECFVNEHTERVLCSHVDHGDADQHCATKLL 120 Query: 111 LRKALNAFFDVLTQYSIECLVR 132 + L ++ LV Sbjct: 121 WMRVQGGVIRSLQTTTLAELVE 142 >gi|159185735|ref|NP_357183.2| hypothetical protein Atu3423 [Agrobacterium tumefaciens str. C58] gi|159140869|gb|AAK89968.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 149 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 5/147 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + +++IA I + FL IL L +GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSKLPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 +L ++ V ++ AG Sbjct: 122 IATILDNMTLAQFVAKDGQDQRSIPAG 148 >gi|159044849|ref|YP_001533643.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912609|gb|ABV94042.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 139 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 69/131 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R+LM A + + +AE +S L KI+Q L +AGIVET RG Sbjct: 1 MRLTSFTDYGLRMLMRMASAPERAFSTADLAEEFDLSRHHLSKIMQRLSRAGIVETRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +PA ++ + V+ E+ + ECF S C + CGL + LR A AF Sbjct: 61 GGGATLAQPASELRLGRVIAVLEQDQPIVECFGSGPHSCTIDRQCGLKARLRAAERAFLT 120 Query: 121 VLTQYSIECLV 131 L + ++ + Sbjct: 121 DLDRSTLADIA 131 >gi|119385683|ref|YP_916738.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376278|gb|ABL71042.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 152 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 75/148 (50%), Gaps = 6/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ AI D +++I++ IS +L ++ L +AG+V++VRG Sbjct: 1 MKLSTKGRYAMVALVDLAIAKGDELTSLAEISKRQDISLPYLEQLFVRLRRAGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL + + I + DV++A +E+ A + L++ L ++L+A Sbjct: 61 PGGGYRLAKAPETIRVADVLEAVDETVSALHIGAGASGGISGSRAQTLSNRLWESLSAHV 120 Query: 119 FDVLTQYSIECLVRNR----SSIKKIFN 142 + L +++ + RN+ ++ KI + Sbjct: 121 YVFLHNHTLADVARNQLLPCPALPKILS 148 >gi|22298046|ref|NP_681293.1| hypothetical protein tlr0503 [Thermosynechococcus elongatus BP-1] gi|22294224|dbj|BAC08055.1| tlr0503 [Thermosynechococcus elongatus BP-1] Length = 145 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y + L+ A P +I QIA I + +L +++ L + G++ + R Sbjct: 1 MELSAKSEYALLALLEMSAAYEQGEPLQIRQIAAMHNIPDRYLEQLMATLRRKGLIRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG L + QI+ILDV+ E + A D + + SV +A A Sbjct: 61 GARGGYVLAKAPWQISILDVLNCIEG---IESKLAQKPPDNGDLERSLIRSVWLEACKAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 DVL +Y+++ L R + +++ Sbjct: 118 NDVLKKYTLQDLCDRRQAYQQV 139 >gi|193216387|ref|YP_001997586.1| BadM/Rrf2 family transcriptional regulator [Chloroherpeton thalassium ATCC 35110] gi|193089864|gb|ACF15139.1| transcriptional regulator, BadM/Rrf2 family [Chloroherpeton thalassium ATCC 35110] Length = 132 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +TK+ +YG+ + Y A+ N +I+E I L K LQ L KAG++ +V+G Sbjct: 3 KVTKKFEYGLIAVRYIAMTSNGEVATAKEISERMGIPYELLAKTLQRLTKAGVITSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG +L RP QIT+ ++ +A E + EC A+ C L +C + L F Sbjct: 63 KGGYKLSRPPKQITLGEIAEAIEGPLNLTECQATQDT-CHLYSTCAIKKSLVHIQQRFQH 121 Query: 121 VLTQYSIECLV 131 + Q +++ ++ Sbjct: 122 IFDQATVDEIL 132 >gi|145223660|ref|YP_001134338.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315443986|ref|YP_004076865.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Mycobacterium sp. Spyr1] gi|145216146|gb|ABP45550.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum PYR-GCK] gi|315262289|gb|ADT99030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. Spyr1] Length = 148 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M + D +IA + SE + K + LV+ G+VE R Sbjct: 1 MQLTRFTDLGLRAMMLLSAGEFADKRVTTGRIAASAGASENHIAKAVSRLVELGLVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V C + CPL+ C L L +A AF Sbjct: 61 GRIGGLSLTEAGRTASVGWLVRELEGDREVVNC--QGETACPLIAGCRLRHALARAKEAF 118 Query: 119 FDVLTQYSIECLVRNRS 135 + L Y++ L R+ + Sbjct: 119 YAELDNYTVSDLARSPT 135 >gi|260463874|ref|ZP_05812071.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259030471|gb|EEW31750.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 149 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L++ + + ++ IA A I + FL IL L AG V++ +G+ Sbjct: 2 LTKKGKYGLKALVHLSGLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I I VV+ + C + DC +C + ++ + A Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120 Query: 118 FFDVLTQYSIECL 130 +VL S+ + Sbjct: 121 IAEVLDNRSLAAM 133 >gi|238784222|ref|ZP_04628235.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC 43970] gi|238714931|gb|EEQ06930.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC 43970] Length = 164 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A+H+ D P ++ I++ IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHDGPVPLADISDRQGISLSYLEQLFSRLRKNGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + A I + V+ A ++S C K C C S+ Sbjct: 61 PGGGYLLGKDAAAIAVGAVIIAVDDSVDATRC--KGKEGCQDGNICLTHSLWCDLSKRIC 118 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ LV N+ ++ Sbjct: 119 GFLNDITLAELVNNKDILE 137 >gi|218463489|ref|ZP_03503580.1| putative transcriptional regulator protein [Rhizobium etli Kim 5] gi|218663550|ref|ZP_03519480.1| putative transcriptional regulator protein [Rhizobium etli IE4771] Length = 154 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVR 132 +L ++E V Sbjct: 122 IAAILDNMTLEQFVA 136 >gi|169828688|ref|YP_001698846.1| hypothetical protein Bsph_3207 [Lysinibacillus sphaericus C3-41] gi|168993176|gb|ACA40716.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 161 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 11/135 (8%) Query: 7 TDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +Y + L+Y + + I ++E +SE +L K+L L KAGIV +V G +GG R Sbjct: 2 VEYALHSLVYLIDVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSGVKGGYR 61 Query: 66 LCRPADQITILDVVKATEESFFVAEC------FASHKIDCPLVGS----CGLTSVLRKAL 115 L + + I+ DVVKA E + +C FA+ +C S C + V+ +A Sbjct: 62 LSKRPEDISFWDVVKAVEGESPIFQCKNIKANFANKTGNCDSCPSATSDCTINIVMLEAE 121 Query: 116 NAFFDVLTQYSIECL 130 + L +I L Sbjct: 122 EQMRNYLRGKTIAWL 136 >gi|226227389|ref|YP_002761495.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27] gi|226090580|dbj|BAH39025.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27] Length = 163 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T +YG+ ++ A + P +A + ++ +IL + +AGIV + RG Sbjct: 1 MRITTWAEYGLICALHLARRGETGPVTGRDVATRERLPGDYVEQILLRMRRAGIVNSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNA 117 RGG L R +I++ DV++A+E + F C + C +C + V Sbjct: 61 ARGGYMLARKPSEISVRDVIQASELTTFDLHCVSHPVDAGRCSESENCSIRPVWMLLQQR 120 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 +VL + L+ + S ++ Sbjct: 121 IDEVLEGVKLSDLLADESVVRD 142 >gi|289664563|ref|ZP_06486144.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671188|ref|ZP_06492263.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 152 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A H D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAAHCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 63 GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 122 LRRVTLAQMLQ 132 >gi|312126489|ref|YP_003991363.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776508|gb|ADQ05994.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor hydrothermalis 108] Length = 137 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ +DY +R++++ + I+E I + FL KI + L+KAGI+E+ RG+ Sbjct: 1 MRLTQASDYALRIVLHLSKKKGMVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFF 119 GG L + + IT+ DV+ A E + + C G C + + Sbjct: 61 NGGYILAKNPEDITMKDVILAVEGTLALNRCQIDPSACSKRATGYCAVHKAFSSVMKTVA 120 Query: 120 DVLTQYSIECLVR 132 +Y+ L + Sbjct: 121 KEFEKYNFAELAK 133 >gi|293375225|ref|ZP_06621510.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis PC909] gi|325845593|ref|ZP_08168879.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp. HGF1] gi|292646161|gb|EFF64186.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis PC909] gi|325488377|gb|EGC90800.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp. HGF1] Length = 131 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+K +DY R L+Y A H D + +++ SE + K++ L K V +++GR Sbjct: 1 MQLSKFSDYSFRALIYLAQHRDQLCTVEELSMNLNTSEQHMKKVIHKLGKTPYVTSIKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFF 119 GG+RL +I + +++K TE++ + ECF + CPL+ S C L S+ AL F Sbjct: 61 GGGLRLGCEPQEINLGEILKITEDNLNILECF-NKSAGCPLLSSGCKLKSITSDALQKFI 119 Query: 120 DVLTQYSIECLV 131 + + Y++E L+ Sbjct: 120 EEFSNYTLEDLL 131 >gi|297153681|gb|ADI03393.1| hypothetical protein SBI_00272 [Streptomyces bingchenggensis BCW-1] Length = 148 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT+ TD +R +M A+ + IA++ + + K + L G+VE RGR Sbjct: 4 RLTRYTDLALRAVMRLAVMDGEELLTTRLIADSMNVPYTHMAKTIAHLQHLGVVEARRGR 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++++ E C + CPL G+C L LR A AF+ Sbjct: 64 NGGLMLTDAGRNTRVGELIRVLEGDREAVVC--EGEAPCPLAGACRLRRALRDAQEAFYA 121 Query: 121 VLTQYSIECLVRNRSS 136 L Q ++ LV + + Sbjct: 122 SLDQVTVADLVASPAG 137 >gi|227823095|ref|YP_002827067.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234] gi|227342096|gb|ACP26314.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + +++IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLASLGPGETAFVTEIATRNNIPKKFLDTILLELRNTGILRSKKGPN 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA +I I V++A + C + DC C + + + +A Sbjct: 62 GGYSLSKPASEIMIGQVIRALDGPLAPIRCASRTAFEACDDCNDPVGCQVRLSMTEVRDA 121 Query: 118 FFDVLTQYSIECLVRN 133 +L ++ V Sbjct: 122 IATILDNMTLAQFVAK 137 >gi|303327293|ref|ZP_07357735.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] gi|302863281|gb|EFL86213.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] Length = 140 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ +T Y R+L Y A H + P + +A IS F+ +IL+ L AGI +VRG Sbjct: 1 MKLSAKTRYAARILFYMAKHVMNEPISSNLLAAKTGISSQFIEQILRQLRLAGITGSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R +++T +VK E +A C + +C G C + Sbjct: 61 AKGGHILLRKPEELTFGCIVKLMEGGIELAGCL-ENPGNCSRFGDCAVRKAWESLQGTLD 119 Query: 120 DVLTQYSIECLVRNRS 135 L ++E L+R++ Sbjct: 120 GALESITMEDLLRDKE 135 >gi|114327990|ref|YP_745147.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] gi|114316164|gb|ABI62224.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] Length = 179 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 4/137 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETV 57 L+K TDY + VL+ A + + IA A + E + K+L+ L +V + Sbjct: 6 RLSKLTDYAVVVLIRLAAESGEASGRVQTAPCIAAATGVPEPTVAKVLKALSVGRLVVSQ 65 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG RL R DQI+I DV++ E + C DC C + +A Sbjct: 66 RGAHGGYRLNRFLDQISIADVIRVLEGPIALTACVEGAHPDCEAACLCPMRGRWDMVNHA 125 Query: 118 FFDVLTQYSIECLVRNR 134 L+ S+ + R Sbjct: 126 IATALSSISLADMARQP 142 >gi|329934735|ref|ZP_08284776.1| putative transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] gi|329305557|gb|EGG49413.1| putative transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] Length = 152 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ P + +AE IS FL IL L + G+V + RG Sbjct: 1 MRISARADYAVRAVVELAVRQGGGPVKAEAVAEVQDISHKFLEGILGDLRRGGLVASRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAF 118 GG RL R A+ IT+ D+++A + G L + Sbjct: 61 GNGGYRLAREAEAITVADIIRAVDGPIVSVR--GERPTQLKYTGPAEPLLPLWIALRANV 118 Query: 119 FDVLTQYSIECLVR 132 +VL ++ L Sbjct: 119 REVLEGVTVADLAA 132 >gi|332186375|ref|ZP_08388120.1| feS assembly SUF system regulator [Sphingomonas sp. S17] gi|332013743|gb|EGI55803.1| feS assembly SUF system regulator [Sphingomonas sp. S17] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + ++ A + + +A + K++ L AG++E+ RG Sbjct: 1 MRLSSLADYAVVMMTAAAREGVGGRSNATLLAGQTGVPLPTAQKLVSRLAGAGLIESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL R AD I++ D+V+A + + C DC L C + A Sbjct: 61 TGGGIRLARDADAISLADIVEAVDGPIALTACVEGAAHDCGLEMQCRVRPHWHVVNQAVR 120 Query: 120 DVLTQYSIECLVRNR 134 + ++ L + Sbjct: 121 AAFSGVTLATLAADP 135 >gi|300770623|ref|ZP_07080502.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300763099|gb|EFK59916.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 147 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ LM + P +I +IA+ I + FL +IL + AGI+ + +G Sbjct: 2 LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + V++ + + C F +C CG+ NA Sbjct: 62 GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 +L SI L+ + Sbjct: 122 MLQILNDTSIAHLINKEKELN 142 >gi|91790106|ref|YP_551058.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666] gi|91699331|gb|ABE46160.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666] Length = 154 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDYG ++ + A + +++A A ++ KIL+ L +A +++++RG Sbjct: 3 RLSKLTDYGTVIMTHMARQPAHVYSAAEVALAVSVTVPTASKILKTLARANLLQSLRGTH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP D+I+I +VV A E V EC A+ + C GSC L + + +V Sbjct: 63 GGYLLSRPPDEISIAEVVDAMEGPVGVTECSAAVGL-CAQEGSCSLRANWQHVNQVIRNV 121 Query: 122 LTQYSIECLVR 132 L+ ++ + + Sbjct: 122 LSDLTLADMAQ 132 >gi|75909333|ref|YP_323629.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703058|gb|ABA22734.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis ATCC 29413] Length = 147 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA+ I +L K+L + +AG+V+++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R +I+I +++A +E+ H S+ ++ Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDETITN---LPRHTPTPAQTEDWVTFSLWQRLNQKLK 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L ++ L + S + Sbjct: 118 EALYSITLADLYYDARSWQASLGE 141 >gi|294792716|ref|ZP_06757863.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] gi|294794467|ref|ZP_06759603.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] gi|294454797|gb|EFG23170.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 3_1_44] gi|294456615|gb|EFG24978.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella sp. 6_1_27] Length = 149 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ D P + +AE ISE +L I+ L A +V+++RG Sbjct: 1 MRISTKGRYALMVLIDLVEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 + GG RL + + TI++++ ATEES + D + N Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE--RTVGFWAGLQNYI 118 Query: 119 FDVLTQYSIECLVR 132 D L +++ ++ Sbjct: 119 HDYLENVTLQDVID 132 >gi|325925546|ref|ZP_08186934.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] gi|325544050|gb|EGD15445.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] Length = 172 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 23 RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 82 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 83 GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 141 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 142 LRRVTLAQMLQ 152 >gi|209525268|ref|ZP_03273810.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima CS-328] gi|209494283|gb|EDZ94596.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima CS-328] Length = 147 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ A + N P + IA I +L K+L + + G+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLAVLQNQGPISVRAIASRQNIPAPYLEKLLIEMRQRGLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L P QI++ +++A E+ ++H+ D + ++ + Sbjct: 61 AHGGYQLAYPPAQISLGQILEAVGETIEP---LSNHQPDAEKIEDWVTFTLWNRLHEKLK 117 Query: 120 DVLTQYSIECL 130 + L S+E L Sbjct: 118 EALYSISLEDL 128 >gi|209550687|ref|YP_002282604.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536443|gb|ACI56378.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 154 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVR 132 +L S+E V Sbjct: 122 IAAILDNMSLEQFVA 136 >gi|84499296|ref|ZP_00997584.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597] gi|84392440|gb|EAQ04651.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597] Length = 139 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 1/127 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDYG+R LM A + ++IA+ IS L K++Q L + G V T RG Sbjct: 1 MRLTSFTDYGLRALMRMASVPERAFSTAEIADEFGISRNHLNKVVQRLARHGFVATRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L PA +I + D+V+ E+ + ECF+ C + C L L A AF Sbjct: 61 GGGAILALPASEIGLGDLVRLLEQDQALVECFSPDGACC-VTPVCRLKGKLYAAEAAFLA 119 Query: 121 VLTQYSI 127 L + ++ Sbjct: 120 ELDRSTL 126 >gi|289767152|ref|ZP_06526530.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289697351|gb|EFD64780.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 148 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LTK TD +R +M A+ D P ++AE + K + L G+VE R Sbjct: 1 MRLTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L + ++ +V+ E V +C CPL G+C L LR A AF Sbjct: 61 GRGGGLTLTDLGRRASVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAF 118 Query: 119 FDVLTQYSIECLVRNRSS 136 + L ++ LV + Sbjct: 119 YAALDPLTVTDLVAAPTG 136 >gi|256389580|ref|YP_003111144.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256355806|gb|ACU69303.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 151 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + DY +RV++ A H + + + + + F+ IL L +A ++ + RG Sbjct: 1 MQISAKADYAVRVMLELAAHGPNLVKSTVLIDHQGLPRKFVESILVELRRADLIRSHRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA I+I V++A + H+ + L+ V A A Sbjct: 61 EGGYTLARPASAISIGQVIRAVDGPLAEVRGLRPHETEYSNAAQ-HLSDVWVAARAALRK 119 Query: 121 VLTQYSIECLVRNR 134 VL + S+ ++ + Sbjct: 120 VLDETSLAHVLSGK 133 >gi|299538065|ref|ZP_07051350.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726267|gb|EFI66857.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 139 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + + +AE +S +L KIL LVKAG++E+ G Sbjct: 2 MKYSKATNYALHTMVFLTRNPKGKSMSVESLAEIQKLSPTYLSKILTKLVKAGLIESNPG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R+ + +I+ LDV+ A E + C + H G C + V+ A N Sbjct: 62 VNGGYRISKRPQEISFLDVIYAIEGQTSLFSCSSEHNDSFHHQG-CLIEQVMVDAENNMK 120 Query: 120 DVLTQYSIECLVRN 133 + L + I + Sbjct: 121 EELNKKFIIDIAHK 134 >gi|94495944|ref|ZP_01302523.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] gi|94424636|gb|EAT09658.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas sp. SKA58] Length = 141 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPAKFLTVILSELSREGLVATQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L ++ D+V+ T S + C + +C C L ++ + + Sbjct: 62 GGYWLALAPVDVSYGDIVRLTRGSLALTPCASRFAHESCTNCLPESECRLHRIMLRVRDE 121 Query: 118 FFDVLTQYSIEC 129 VL S+ Sbjct: 122 TAKVLDGISLAE 133 >gi|15895504|ref|NP_348853.1| hypothetical protein CA_C2236 [Clostridium acetobutylicum ATCC 824] gi|15025236|gb|AAK80193.1|AE007724_2 Uncharacterized conserved protein of YjeB/RRF2 family [Clostridium acetobutylicum ATCC 824] gi|325509651|gb|ADZ21287.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 147 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 11/143 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ ++ A+++ + + I++ ISE +L +I L K G+V+ +G Sbjct: 1 MKISTKGRYGLKAMIDLAVNSVNDIVTLKSISQREKISEGYLEQIFSALRKKGLVKGRKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-----ECFASHKIDCPLVGSCGLTSVLRKA 114 +GG L + +IT+ D++ A E V E K+D + G+ V K Sbjct: 61 SQGGYVLGKSMKEITVADILNALEGDLSVVERDENEILKEDKLDNFIRGN-----VWTKI 115 Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137 A +V+ ++E LV + +++ Sbjct: 116 NMAIEEVVVSITLEDLVMDYNNV 138 >gi|307323873|ref|ZP_07603082.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306890322|gb|EFN21299.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 158 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + DY +R L A D P IA + I FL + + L +AG+V + RG Sbjct: 23 MQISAKADYAVRALAELAADTDRPLTCEAIATSQGIPFRFLKAVFRDLRQAGLVRSQRGC 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R ++T+ D+V A + +F + + GL V R + Sbjct: 83 EGGYWLARDPAEMTLADIVLAVDGAFLTLRGERLDDLGYH-GPAAGLPGVWRGMEDHVRQ 141 Query: 121 VLTQYSIECLVRNR 134 VLT ++ LVR R Sbjct: 142 VLTATALSDLVRER 155 >gi|295095801|emb|CBK84891.1| rrf2 family protein (putative transcriptional regulator) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 169 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI LM A N+ + ++A + +L KI L +AG+V + G+ Sbjct: 5 SSGVEYGIHSLMCMVDAKGNEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVISTEGKG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RPA+ I++LDV A + + EC F G CG+ SV+ Sbjct: 65 GGFRLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMD 124 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L +++I L R Sbjct: 125 SAQQRMEEELGRHTILDLARK 145 >gi|148653426|ref|YP_001280519.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572510|gb|ABQ94569.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp. PRwf-1] Length = 173 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ AI + +S IA+ IS +L ++ L KAG+V + Sbjct: 1 MRLTTRGRYAVTALLDLAIQDGDSTNAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L +P I ++ ++ A +ES + +C C + Sbjct: 61 RGASGGYHLAKPLADIDVMTIITAVDESVNAM--QCGGQGNCQGGAMCLTHDLWCALSKH 118 Query: 118 FFDVLTQYSIECLVR 132 L S+E L++ Sbjct: 119 IEQYLKNISLEQLLQ 133 >gi|154244166|ref|YP_001415124.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158251|gb|ABS65467.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 148 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ ++ A + +++ IAEA I + FL IL L AG + + +G+ Sbjct: 2 LTKKGKYGLKAAVHLARLPPGASTQVADIAEANNIPKKFLDVILGELRNAGFLSSKKGKL 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CP--LVGSCGLTSVLRKALNAF 118 GG RL R ++I + ++++A + C + + + C V +C + ++ + +A Sbjct: 62 GGYRLARAPEEIVVGEMIRALDGPLAPFACASRNAYEQCEDCDVATCEVRMLMVQVRDAI 121 Query: 119 FDVLTQYSIECL 130 VL Y++ + Sbjct: 122 GTVLDTYTLAQM 133 >gi|148379163|ref|YP_001253704.1| rrf2 family protein [Clostridium botulinum A str. ATCC 3502] gi|153932538|ref|YP_001383539.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|153935743|ref|YP_001387088.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|153939009|ref|YP_001390526.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|168178597|ref|ZP_02613261.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|170754484|ref|YP_001780801.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|187780211|ref|ZP_02996684.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC 15579] gi|226948445|ref|YP_002803536.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|148288647|emb|CAL82728.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928582|gb|ABS34082.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|152931657|gb|ABS37156.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|152934905|gb|ABS40403.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|169119696|gb|ACA43532.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|182670637|gb|EDT82611.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|187773836|gb|EDU37638.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC 15579] gi|226844524|gb|ACO87190.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|295318607|gb|ADF98984.1| rrf2 family protein [Clostridium botulinum F str. 230613] Length = 145 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT ++++A E V E ++ + S + + + Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118 Query: 120 DVLTQYSIECLVR 132 V+ ++E LV Sbjct: 119 RVVDSITLEDLVE 131 >gi|330836543|ref|YP_004411184.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] gi|329748446|gb|AEC01802.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] Length = 144 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ RT YG+R+L+ A + P ++ A I +L ++ L +G + +V+G Sbjct: 1 MKISTRTHYGVRLLVDLASQDMADPVPLATTAGRQDIPLRYLEQVADILRWSGFLLSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA I + DV++A E + + SH+ + L C +V K +A Sbjct: 61 ASGGYRLARPAQDILLGDVLRALEGDLNIVDPLQSHEAENRLQ-QCLRLTVYNKLEHAIA 119 Query: 120 DVLTQYSIECLV 131 +V+ S+ L+ Sbjct: 120 NVVDTISLASLI 131 >gi|260221138|emb|CBA29404.1| HTH-type transcriptional regulator iscR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 145 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 4/116 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ + + P ++ I++ IS +L ++ L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQSSGPVTLAAISQRQQISLSYLEQLFGKLRRHDLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKA 114 GG L R A IT+ +++ + +E +C S K +C G+ C + Sbjct: 61 PGGGYTLARKASDITVAEIITSVDEPIDATQC--SGKENCLGEGARCMTHDLWASL 114 >gi|315647231|ref|ZP_07900344.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315277433|gb|EFU40762.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 161 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 16/144 (11%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K TDY + L++ + + I +++ +SE +L KI+ L + GIV V G Sbjct: 1 MQFSKSTDYALHALIHLGLSERNNNIGIKELSATLGVSETYLSKIMSKLRQDGIVRAVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---------------ASHKIDCPLVGS 104 GG L + +QIT LDV++ E + EC P Sbjct: 61 VNGGYELAKSPEQITFLDVIQVIEGRQHLFECSNTSSRQHEVLAEVEDDQGDSIRPRKNG 120 Query: 105 CGLTSVLRKALNAFFDVLTQYSIE 128 C + V+ A L +Y+I+ Sbjct: 121 CLVEKVMLGAEQHMHQYLREYTIQ 144 >gi|308071586|ref|YP_003873191.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305860865|gb|ADM72653.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 132 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ TDY + ++Y + + D P + +A +S +L K++ LVKAG++++V G Sbjct: 1 MKYSQATDYALHAMLYLVMSDSDKPIGVQMLAAKLNVSRTYLSKMMAQLVKAGLIQSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + + I+ LDV++A E + + EC H C + V+ A Sbjct: 61 VNGGYRLRQRGEDISFLDVIQAIEGTASLFECSLDHGTK------CLIQQVVFDAERQME 114 Query: 120 DVLTQYSIECLVR 132 D L I L++ Sbjct: 115 DYLRHKKIADLIK 127 >gi|158424803|ref|YP_001526095.1| hypothetical protein AZC_3179 [Azorhizobium caulinodans ORS 571] gi|158331692|dbj|BAF89177.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 148 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ ++ A + N++++IAEA I + FL IL L AG + + +G+ Sbjct: 2 LTKKGKYGLKAAVHLARLGPGESNQVAEIAEANQIPKKFLDVILGELRNAGFLSSKKGKT 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117 GG +L + + I + D+++A + C + + DC + C + ++ K +A Sbjct: 62 GGYKLAKLPEDIIVGDLIRALDGPLAPIPCASRNAFVPCDDCDVE-HCEVRRLMVKVRDA 120 Query: 118 FFDVLTQYSIE---CLVRNR 134 VL Y++ L ++R Sbjct: 121 MGTVLDTYTLAQMRDLRQDR 140 >gi|148654472|ref|YP_001274677.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566582|gb|ABQ88727.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus sp. RS-1] Length = 146 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +YG+R L+ A + P + I I E +L +IL L +A ++E++RG Sbjct: 1 MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRARLIESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL R QIT+LD + A E A+ + + V A Sbjct: 61 PQGGHRLARHPSQITVLDALLALEGPLLAADSGRDAPTPTEPMDRELVREVWDGAREMLE 120 Query: 120 DVLTQYSIECLVRNRSS 136 L ++E L + ++ Sbjct: 121 RYLASITLEDLCQRKAQ 137 >gi|282896876|ref|ZP_06304882.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] gi|281198285|gb|EFA73175.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] Length = 145 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H N P +I QIA I + +L ++L L + GI+++ R Sbjct: 1 MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L R +IT+LD+++ E +AE + S + + ++A A Sbjct: 61 GSKGGYLLAREPRKITVLDILECLEGLDIKIAE----DNTNPKTADSGIIDEIWQEARQA 116 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 VL +YS+E L R+ +++ Sbjct: 117 ANLVLEKYSLEDLCEKRTLRRQL 139 >gi|326386610|ref|ZP_08208232.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208925|gb|EGD59720.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + + A + Q+AE + + K++ L AG++ +VRG Sbjct: 1 MRLSSMADYAVVAMSAAARRCGHARVSAQQLAEDTGLPVPTVQKLVSKLSAAGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L RPA I++ D+V+A E +A+C + + DC + C + A Sbjct: 61 AGGGLTLARPAAAISLADIVEAVEGPIAMAQCSDNSRHDCTIGQGCQVRPHWPAVDAALR 120 Query: 120 DVLTQYSIECLVRNRSS 136 L S+ L + Sbjct: 121 HALAGVSLSQLAAPGTQ 137 >gi|227499551|ref|ZP_03929658.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227218310|gb|EEI83564.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 133 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A ++ +S+I++ +SE +L ++++ L K G++ + RG Sbjct: 1 MKLSTRGRYGLRAMCYLASNSSRGYISVSEISDKLNLSENYLEQLIRLLKKEGLISSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG ++ R D++T+ D+++ E + +++C + ++C C V K Sbjct: 61 PKGGYKITRDLDELTVGDILRVLEGNITISDCVSGD-VNCD--DKCDAYYVFDKIDKVLN 117 Query: 120 DVLTQYSIECLVRNR 134 + + S++ ++ Sbjct: 118 EAIDSISLKNIINQE 132 >gi|150395418|ref|YP_001325885.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150026933|gb|ABR59050.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 153 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I++IA+ I + FL IL L AG++ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEICEDCSDPETCRVRISMTSVRDA 121 Query: 118 FFDVLTQYSIECLVR 132 +L ++ Sbjct: 122 MSSILDSMTLSEFAA 136 >gi|121594469|ref|YP_986365.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|120606549|gb|ABM42289.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] Length = 179 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L++ + + +AE + + +L K+ L +AG+V Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG RL RPA QI++LD+V A + + +C F G+C + Sbjct: 61 EGVRGGFRLARPAAQISVLDIVHAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLV 131 +V+ A + L Q ++ L Sbjct: 121 AVMLGAQKRMEESLAQQTVLDLA 143 >gi|85704175|ref|ZP_01035278.1| Rrf2 family protein [Roseovarius sp. 217] gi|85671495|gb|EAQ26353.1| Rrf2 family protein [Roseovarius sp. 217] Length = 140 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 71/135 (52%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD+G+R+LM A D +++A +S L KI+Q L +AG+++T RG Sbjct: 1 MRLTSFTDFGLRMLMRMASAPDRAFSSAELATEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP QI + DV++ E + CF DC L G C L + LR A AF D Sbjct: 61 GGGALLARPPAQIRLGDVIRHLESGQALVACFGPEAGDCSLDGRCRLKARLRSAERAFLD 120 Query: 121 VLTQYSIECLVRNRS 135 L + ++ + + + Sbjct: 121 DLDRSTLADIALDPT 135 >gi|297537962|ref|YP_003673731.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301] gi|297257309|gb|ADI29154.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301] Length = 153 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +RVLMY P I++IAE + L K++ L K G V RG Sbjct: 1 MQLTKFTDLSLRVLMYLTQEERLMPVTINEIAEQFTVPRNHLIKVVTRLNKLGWVSATRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+RL A+Q+ + +V++ E + + +C K C L G+C L +L L AF+ Sbjct: 61 RNGGLRLGVQANQLKLGNVLQELENASALIDCA---KPPCALKGNCHLKEILDIGLKAFY 117 Query: 120 DVLTQYSIECLVRNRSS 136 + + +S+ +V +++ Sbjct: 118 EHMNTFSLADVVNHKTQ 134 >gi|94313237|ref|YP_586446.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357089|gb|ABF11177.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus metallidurans CH34] Length = 191 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 11/142 (7%) Query: 3 LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ +YG+ L+Y + + +AE I +L K+ L KA +V G Sbjct: 4 ISTGVEYGLHCLLYLSRSQASVETASVRDLAELQGIPADYLAKLFTKLAKANLVVATEGI 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111 RGG L RPAD+IT+ DVV A + + +C F G C + +V+ Sbjct: 64 RGGFSLARPADKITVHDVVVAIDGDKPLFDCLEIRDRCAVFDEAPPAWATRGVCSIHAVM 123 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 + A A L Q+++ + Sbjct: 124 QSAEKAMRHELRQHTLLDIANR 145 >gi|182678359|ref|YP_001832505.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634242|gb|ACB95016.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 149 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A ++ IA A I + FL IL L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGRPLGEATLVTDIAVANEIPKKFLDTILGELRNAGFVNSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I + +V+ + +C + DC C + ++ +A NA Sbjct: 62 GGYTLARPAHEIMVGHIVRVLDGPLAPIQCASKTSYRRCDDCADEKKCTVRLLMLEARNA 121 Query: 118 FFDVLTQYSIECL 130 VL S+ + Sbjct: 122 IAMVLDNRSLAEM 134 >gi|325122368|gb|ADY81891.1| hypothetical protein BDGL_001305 [Acinetobacter calcoaceticus PHEA-2] Length = 164 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 9/123 (7%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D P +AE +S F+ KI L KAG+V G RGG L RPA +I+ LD+V Sbjct: 3 NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRGGYLLARPAHEISFLDIV 62 Query: 80 KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 A E + EC F + D G C + +V+ +A A D L +++ + Sbjct: 63 NAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDI 122 Query: 131 VRN 133 Sbjct: 123 ADR 125 >gi|319941644|ref|ZP_08015968.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319804874|gb|EFW01728.1| BadM/Rrf2 family Transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 178 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+T+ TD +RVLMY A + +++IAE + + K++ L + G + T RG Sbjct: 1 MHITRFTDLSLRVLMYLCARPSQDRTTVTEIAERIGWTRNHVVKVVHRLSQEGWLATQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L A ++ + +V++ E + C C C L VL A N F+ Sbjct: 61 RTGGLGLDPQARKLRLGNVIRTLEGDDCLINC---KDPPCNFGRGCPLIKVLNDAQNVFY 117 Query: 120 DVLTQYSIECLVRN 133 + L Y++E + ++ Sbjct: 118 EALNAYTLEDVAQH 131 >gi|86358962|ref|YP_470854.1| hypothetical protein RHE_CH03364 [Rhizobium etli CFN 42] gi|86283064|gb|ABC92127.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 154 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L RPA +I I V++ + C + DC +C + + +A Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121 Query: 118 FFDVLTQYSIECLVR 132 +L ++E V Sbjct: 122 IAAILDNMTLEQFVA 136 >gi|302336476|ref|YP_003801683.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] gi|301320316|gb|ADK68803.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM 7084] Length = 163 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 4/146 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L + +E I F I LV+AGI+E+ RG Sbjct: 1 MDISRKTDYALRMLSELVRSEGGIISVRAASEKDNIPYSFARSIQHDLVRAGIIESTRGS 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118 RGG+RL + T+ VV+A + +++ C H+ CP C + +A Sbjct: 61 RGGMRLAVDPRRTTVRQVVEAIQGPIYISSCDTVGGHEGPCPFRSECHYNPIWCEAERIL 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144 D ++ +V + + G Sbjct: 121 RDYFDSVTLYQVVCEHK--HPMLDEG 144 >gi|153852854|ref|ZP_01994291.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814] gi|149754496|gb|EDM64427.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814] Length = 148 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L+ AI++ ++ IAE IS +L ++ L KAGIV++++G Sbjct: 1 MKLSMKSRYGLRALIDLAINSKTEQVALNSIAERNKISPQYLEQVFASLRKAGIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L RP +IT+ +++A E + + + + V+ + ++ Sbjct: 61 SQGGYFLSRPPQEITVSSIIEALEGDYRIEDEELPKEGKYTGSVKAIQKLVIDRVNDSVT 120 Query: 120 DVLTQYSIECLVRNRSS 136 ++L ++ L + Sbjct: 121 EILQSVTLHDLEKEYQE 137 >gi|37520938|ref|NP_924315.1| hypothetical protein glr1369 [Gloeobacter violaceus PCC 7421] gi|35211933|dbj|BAC89310.1| glr1369 [Gloeobacter violaceus PCC 7421] Length = 159 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T+++DYGI ++ + A H + ++A + + KIL+ L + G++ + RG + Sbjct: 3 RITRQSDYGIVLVSHLAAHPERSFGAPELAAQVNLPLPIVRKILKLLAREGLLVSQRGVK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L P I++ DVV A E + EC C C L ++ Sbjct: 63 GGYCLALPPAVISVADVVTALEGPIALTECIEDAPGGGCAHEAVCPLMPKWQRINAVIQQ 122 Query: 121 VLTQYSIECLVRNRSSIKKIFN 142 L+ S+ L+ + + Sbjct: 123 ALSGISLSELIAPWPQELPVLS 144 >gi|322805498|emb|CBZ03062.1| predicted transcriptional regulator of cysteine synthase, Rrf2 family [Clostridium botulinum H04402 065] Length = 145 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT ++++A E V E ++ + S + + + Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118 Query: 120 DVLTQYSIECLVR 132 V+ ++E LV Sbjct: 119 RVVDSITLEDLVE 131 >gi|170759361|ref|YP_001786561.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406350|gb|ACA54761.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] Length = 145 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + IT ++++A E V E ++ + S + + + Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118 Query: 120 DVLTQYSIECLVR 132 V+ ++E LV Sbjct: 119 RVVDSITLEDLVE 131 >gi|103486976|ref|YP_616537.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977053|gb|ABF53204.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis alaskensis RB2256] Length = 147 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR + A H +++ IAEA I FL IL + + G++ + RGR Sbjct: 2 LSQKTRYTIRAFQHLADHWGRGQVQLADIAEAQNIPPKFLTVILSEMAREGLLISQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG +L P I+ D+V+ T S + C A H +C C L S++ K + Sbjct: 62 GGYQLALPPVDISYGDLVRLTRGSLALVPCAARNAHEHCKNCLPEAECRLRSLMLKVRDE 121 Query: 118 FFDVLTQYSIEC 129 +L + ++ Sbjct: 122 TASILDRITLAD 133 >gi|308172347|ref|YP_003919052.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307605211|emb|CBI41582.1| putative transcriptional regulator [Bacillus amyloliquefaciens DSM 7] Length = 167 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + + I +AE +SE FL K+ L KAGIV +V G Sbjct: 1 MQYSAGVEYALHCLVYLIDVPSKKSVGIRDLAEFQGLSESFLSKVFGKLSKAGIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109 +GG RL + + I+ DV++A E + +C SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVSNGLLYRDKCNSCESSNSSCTINL 120 Query: 110 VLRKALNAFFDVLTQYSIECL 130 V+ +A L ++ L Sbjct: 121 VMLEAEEQMRKYLRNKTLAWL 141 >gi|239904872|ref|YP_002951610.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] gi|239794735|dbj|BAH73724.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus RS-1] Length = 150 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +IA+ I + FL IL L + G V + RG+ GG L RPA ++T+ V++ Sbjct: 22 GTGAAPAGEIADRQAIPKRFLEVILNQLRQGGFVASQRGKEGGFYLARPASEVTVGAVIR 81 Query: 81 ATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 + +C DCPL G C + +A +A V S+ LV I++ Sbjct: 82 FMDGPISPVDCHRERPGHDCPLQGGCVFRGLWDEARDALERVYDTRSLADLVAEDRRIRQ 141 >gi|301045949|ref|ZP_07193133.1| Rrf2 family protein [Escherichia coli MS 185-1] gi|300302032|gb|EFJ58417.1| Rrf2 family protein [Escherichia coli MS 185-1] Length = 112 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ IS++ + +S + KI+ L +AG V VRG+ GG+RL +PA I I D Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGD 62 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 VV+ E + C + C + +C L L KA+ +F L Y++ LV Sbjct: 63 VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLV 112 >gi|229060442|ref|ZP_04197805.1| Transcriptional regulator [Bacillus cereus AH603] gi|228718825|gb|EEL70446.1| Transcriptional regulator [Bacillus cereus AH603] Length = 133 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 +GG L + I+ LD++ A E + EC C C + ++ A Sbjct: 61 PKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC-------CLHQEPGCLINELMLAAEEKM 113 Query: 119 FDVLTQYSIECLVRN 133 + L I L + Sbjct: 114 EEELRNQKIVDLAKK 128 >gi|166032645|ref|ZP_02235474.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC 27755] gi|166027002|gb|EDR45759.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC 27755] Length = 148 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ YG+R L+ +++ + + IAE IS +L ++ L KAGIV++++G Sbjct: 1 MKLSMKSRYGLRALIDLSVNFKNEQVALGGIAERNNISPQYLEQVFASLRKAGIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L +PA+QITI +V++A E + + D V+ K Sbjct: 61 SQGGYFLNKPAEQITISEVIEALEGDYRIEAEDVPEDCDYKAAPEAIQKLVIDKVNYELE 120 Query: 120 DVLTQYSIECL 130 +LT ++ L Sbjct: 121 KILTGITLYDL 131 >gi|58581029|ref|YP_200045.1| hypothetical protein XOO1406 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425623|gb|AAW74660.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 152 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC +H C + +CG+ S R + D Sbjct: 63 GGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 122 LRRVTLAQMLQ 132 >gi|84622946|ref|YP_450318.1| hypothetical protein XOO_1289 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577995|ref|YP_001914924.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366886|dbj|BAE68044.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522447|gb|ACD60392.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 152 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC +H C + +CG+ S R + D Sbjct: 63 GGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 122 LRRVTLAQMLQ 132 >gi|298290870|ref|YP_003692809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296927381|gb|ADH88190.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 149 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT R YG++ +++ A +IA+A I + FL IL L AG++ + +G Sbjct: 2 LTNRGKYGLKAMLHLAAQPPGTSLGGQEIADANNIPKKFLDAILLDLRHAGMLRSRKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L R D I + +++ + C + DC VGSC + + K +A Sbjct: 62 GGYTLARSIDDIRVGHIIRVLDGPLAPIGCASKSAYVPCQDCRDVGSCAVRITMTKVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +VL + S+ ++ Sbjct: 122 ISEVLDRMSLTDMM 135 >gi|172057245|ref|YP_001813705.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989766|gb|ACB60688.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 131 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IRVL+Y ++ + +I ++A+ IS+ L KI+ L K G++ + +GR Sbjct: 1 MKMTRSTDYAIRVLLYATLNPNRLVQIQEVADHYAISKNHLMKIVHALSKFGLITSYQGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L + ++IT+ VV EE ++ E +++ + +A F + Sbjct: 61 NGGFKLAKAPNEITLGQVVALFEEVSYLKEVLPTNEKETLKN----TRQAFDEAFLLFAN 116 Query: 121 VLTQYSIECLVR 132 L Y++E L + Sbjct: 117 ALQAYTLEDLTK 128 >gi|313498421|gb|ADR59787.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 179 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L++ + + +AE + + +L K+ L +AG+V Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG RL RPA QI++LD+V A + + +C F G+C + Sbjct: 61 EGVRGGFRLARPAAQISVLDIVNAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLV 131 +V+ A + L Q ++ L Sbjct: 121 AVMLGAQKRMEESLAQQTVLDLA 143 >gi|322437255|ref|YP_004219467.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] gi|321164982|gb|ADW70687.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] Length = 163 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 10/144 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHN---------DYPNRISQIAEACCISELFLFKILQPLVKAG 52 LTK+ DYG+ L Y A +Y IAEA I L KILQ L K G Sbjct: 3 RLTKKADYGLMALKYLAEQAAATSGNAAHNYAQSAKDIAEAYHIPPQLLAKILQTLAKGG 62 Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 ++ + G GG L R A +I+ +V++A + F+ C H C L C + LR Sbjct: 63 LLVSHAGTNGGYALARSAAEISAFEVIRAIDGPLFITSCITIHGT-CDLDSHCTIKEPLR 121 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 K ++ D+L+ I L+ + Sbjct: 122 KVNDSIKDLLSAIRIADLIDPADA 145 >gi|15924616|ref|NP_372150.1| hypothetical protein SAV1626 [Staphylococcus aureus subsp. aureus Mu50] gi|15927206|ref|NP_374739.1| hypothetical protein SA1453 [Staphylococcus aureus subsp. aureus N315] gi|21283305|ref|NP_646393.1| hypothetical protein MW1576 [Staphylococcus aureus subsp. aureus MW2] gi|49483871|ref|YP_041095.1| hypothetical protein SAR1706 [Staphylococcus aureus subsp. aureus MRSA252] gi|49486459|ref|YP_043680.1| hypothetical protein SAS1562 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650508|ref|YP_186521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL] gi|82751225|ref|YP_416966.1| hypothetical protein SAB1496c [Staphylococcus aureus RF122] gi|87161573|ref|YP_494278.1| hypothetical protein SAUSA300_1583 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268107|ref|YP_001247050.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394175|ref|YP_001316850.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus JH1] gi|151221740|ref|YP_001332562.1| hypothetical protein NWMN_1528 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979944|ref|YP_001442203.1| hypothetical protein SAHV_1613 [Staphylococcus aureus subsp. aureus Mu3] gi|221141104|ref|ZP_03565597.1| hypothetical protein SauraJ_05628 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314983|ref|ZP_04838196.1| hypothetical protein SauraC_02182 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732283|ref|ZP_04866448.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733122|ref|ZP_04867287.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006412|ref|ZP_05145013.2| hypothetical protein SauraM_08085 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425750|ref|ZP_05602174.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428410|ref|ZP_05604808.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431048|ref|ZP_05607427.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433734|ref|ZP_05610092.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436649|ref|ZP_05612693.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257793700|ref|ZP_05642679.1| Rrf2 family protein [Staphylococcus aureus A9781] gi|258411001|ref|ZP_05681281.1| Rrf2 family protein [Staphylococcus aureus A9763] gi|258420198|ref|ZP_05683153.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719] gi|258424052|ref|ZP_05686934.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258438199|ref|ZP_05689483.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299] gi|258443662|ref|ZP_05692001.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446869|ref|ZP_05695023.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300] gi|258448783|ref|ZP_05696895.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258450547|ref|ZP_05698609.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453602|ref|ZP_05701580.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262048619|ref|ZP_06021502.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30] gi|262051277|ref|ZP_06023501.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3] gi|269203252|ref|YP_003282521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98] gi|282893129|ref|ZP_06301363.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8117] gi|282904206|ref|ZP_06312094.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160] gi|282906032|ref|ZP_06313887.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908946|ref|ZP_06316764.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911263|ref|ZP_06319065.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WBG10049] gi|282914431|ref|ZP_06322217.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899] gi|282916894|ref|ZP_06324652.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus D139] gi|282919400|ref|ZP_06327135.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C427] gi|282920174|ref|ZP_06327899.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9765] gi|282924725|ref|ZP_06332393.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C101] gi|282928260|ref|ZP_06335865.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A10102] gi|283770700|ref|ZP_06343592.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus H19] gi|283958386|ref|ZP_06375837.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024683|ref|ZP_06379081.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 132] gi|293503505|ref|ZP_06667352.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus 58-424] gi|293510523|ref|ZP_06669229.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus M809] gi|293531063|ref|ZP_06671745.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015] gi|294848656|ref|ZP_06789402.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9754] gi|295406748|ref|ZP_06816553.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8819] gi|295428202|ref|ZP_06820834.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275912|ref|ZP_06858419.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MR1] gi|297207653|ref|ZP_06924088.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590830|ref|ZP_06949468.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911735|ref|ZP_07129178.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380777|ref|ZP_07363444.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701424|dbj|BAB42718.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247397|dbj|BAB57788.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204745|dbj|BAB95441.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49242000|emb|CAG40697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244902|emb|CAG43363.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284694|gb|AAW36788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL] gi|82656756|emb|CAI81185.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|87127547|gb|ABD22061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741176|gb|ABQ49474.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus JH9] gi|149946627|gb|ABR52563.1| putative transcriptional regulator, Rrf2 family [Staphylococcus aureus subsp. aureus JH1] gi|150374540|dbj|BAF67800.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722079|dbj|BAF78496.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724072|gb|EES92801.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728878|gb|EES97607.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257271444|gb|EEV03590.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275251|gb|EEV06738.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278251|gb|EEV08893.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281827|gb|EEV11964.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284000|gb|EEV14123.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257787672|gb|EEV26012.1| Rrf2 family protein [Staphylococcus aureus A9781] gi|257840151|gb|EEV64615.1| Rrf2 family protein [Staphylococcus aureus A9763] gi|257843909|gb|EEV68303.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719] gi|257845673|gb|EEV69705.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848243|gb|EEV72234.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299] gi|257851068|gb|EEV75011.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854444|gb|EEV77393.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300] gi|257858061|gb|EEV80950.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257861705|gb|EEV84504.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864333|gb|EEV87083.1| transcriptional regulator [Staphylococcus aureus A5937] gi|259160914|gb|EEW45934.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3] gi|259163266|gb|EEW47825.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30] gi|262075542|gb|ACY11515.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98] gi|269941112|emb|CBI49498.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282313560|gb|EFB43955.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C101] gi|282317210|gb|EFB47584.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus C427] gi|282319381|gb|EFB49733.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus D139] gi|282321612|gb|EFB51937.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899] gi|282324958|gb|EFB55268.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WBG10049] gi|282327210|gb|EFB57505.1| iron-sulfur cluster assembly transcription factor IscR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331324|gb|EFB60838.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590067|gb|EFB95149.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A10102] gi|282594522|gb|EFB99507.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9765] gi|282595824|gb|EFC00788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160] gi|282764447|gb|EFC04573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8117] gi|283460847|gb|EFC07937.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus H19] gi|283470903|emb|CAQ50114.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ST398] gi|283790535|gb|EFC29352.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285817308|gb|ADC37795.1| Iron-sulfur cluster regulator IscR [Staphylococcus aureus 04-02981] gi|290920331|gb|EFD97397.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015] gi|291095171|gb|EFE25436.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus 58-424] gi|291466887|gb|EFF09407.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus M809] gi|294824682|gb|EFG41105.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A9754] gi|294968495|gb|EFG44519.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8819] gi|295128560|gb|EFG58194.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887670|gb|EFH26568.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575716|gb|EFH94432.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694906|gb|ADI98128.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300885981|gb|EFK81183.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333300|gb|ADL23493.1| putative transcriptional regulator, Rrf2 family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751455|gb|ADL65632.1| putative transcriptional regulator, Rrf2 family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340653|gb|EFM06586.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437906|gb|ADQ76977.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830013|emb|CBX34855.1| rrf2 family protein (transcriptional regulator) family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129908|gb|EFT85898.1| hypothetical protein CGSSa03_02453 [Staphylococcus aureus subsp. aureus CGS03] gi|315195526|gb|EFU25913.1| hypothetical protein CGSSa00_07665 [Staphylococcus aureus subsp. aureus CGS00] gi|315198676|gb|EFU29004.1| hypothetical protein CGSSa01_09149 [Staphylococcus aureus subsp. aureus CGS01] gi|320140487|gb|EFW32341.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144026|gb|EFW35795.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323442831|gb|EGB00456.1| Rrf2 family protein [Staphylococcus aureus O46] gi|329314301|gb|AEB88714.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus T0131] gi|329727351|gb|EGG63807.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus subsp. aureus 21172] gi|329728427|gb|EGG64864.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus subsp. aureus 21189] gi|329733167|gb|EGG69504.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus subsp. aureus 21193] Length = 140 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PA++I+ D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112 Query: 120 DVLTQYSIECLVR 132 DVL +++ L Sbjct: 113 DVLDNTTLKYLAE 125 >gi|242373926|ref|ZP_04819500.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242348480|gb|EES40082.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 140 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PA++IT D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL +++ L + + + + Sbjct: 113 DVLDNTTLKYLADYKETDEDL 133 >gi|162148975|ref|YP_001603436.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787552|emb|CAP57148.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 180 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 T+Y + L++ + + P +A+ I F+ K+L L KAG++E G RGG RL Sbjct: 8 TEYVLHSLLWLVGNPE-PVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66 Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117 RPA+ I++L VV A E + C F G CG+ +V+ +A A Sbjct: 67 ARPAEDISVLAVVDAVEGRKSLFNCQEIRRRCALFDERPPRWATQGVCGIHAVMLRAEQA 126 Query: 118 FFDVLTQYSIECL---VRNRSSIKKIFNA 143 L + S+ L VR+++ + + +A Sbjct: 127 MRQELARTSLADLARSVRDKAPLPFLGDA 155 >gi|73662442|ref|YP_301223.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494957|dbj|BAE18278.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 139 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ L AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAEENNLSDLYLEQLVGTLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PAD+IT D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112 Query: 120 DVLTQYSIECLVR 132 DVL S++ L Sbjct: 113 DVLDNTSLKYLAE 125 >gi|221194912|ref|ZP_03567968.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] gi|221184815|gb|EEE17206.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC 49626] Length = 179 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY +R+L + D + +A + F I LV++ IV ++RG Sbjct: 1 MEVSRKTDYALRILSILVKNPDKVISVRDAVQASDVPYSFARVIQHDLVRSHIVSSMRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG+ L +IT+LDVV+A + +A C CP SC V A Sbjct: 61 QGGMSLAVDPKEITLLDVVEAIQGPILIAGCESAGPDNTPCPRKASCSFNPVWCNAEKIL 120 Query: 119 FDVLTQYSIECLVRN 133 ++ +V Sbjct: 121 RSYFASVTLSQIVEE 135 >gi|325915080|ref|ZP_08177408.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas vesicatoria ATCC 35937] gi|325538692|gb|EGD10360.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas vesicatoria ATCC 35937] Length = 152 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A + S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARSGEVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A QIT++++V+A E + EC H C + +CG+ S R + D Sbjct: 63 GGYRLARDAGQITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 122 LRRVTLAQMLQ 132 >gi|300744304|ref|ZP_07073323.1| Rrf2 family protein [Rothia dentocariosa M567] gi|311112919|ref|YP_003984141.1| transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|300380029|gb|EFJ76593.1| Rrf2 family protein [Rothia dentocariosa M567] gi|310944413|gb|ADP40707.1| transcriptional regulator [Rothia dentocariosa ATCC 17931] Length = 170 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +R++M + + +I+E + K + LV G++E+ RG Sbjct: 1 MRLTAFSDVSLRIMMLLSSLQEGEKLSTQRISEGVGTPYNHVAKSVAFLVNQGLLESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGV L + T+ V+++TE + EC +CPL C L +VL +A AF+ Sbjct: 61 RSGGVLLSETGRKATVGQVLRSTEGDIPMIEC-EDENGNCPLDSFCRLRTVLARAREAFY 119 Query: 120 DVLTQYSIECL 130 + I L Sbjct: 120 ASVDDVVISEL 130 >gi|291562421|emb|CBL41237.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SS3/4] Length = 147 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%) Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 +++ A H +D + IA +S+ +L +I+ L K G++ T RG +GG +L + Sbjct: 1 MVIDLAEHADDGFISLKDIAARQGLSKKYLEQIVPLLNKTGMLSTTRGYQGGYKLAKSPS 60 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 + T+ +++ TE S C C +C V D L +I+ ++ Sbjct: 61 ECTVGAILQTTEGSLAPVSCLEHTPNPCERCSACDTLPVWEGLNRVIMDYLDGITIQTIL 120 Query: 132 RNRSSIKK 139 + +++ Sbjct: 121 DQKHELEE 128 >gi|146276848|ref|YP_001167007.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555089|gb|ABP69702.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 189 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 7/148 (4%) Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A RI IA + FL IL + AG + ++RG Sbjct: 25 ITQKMKYALKALMVLAEEHSGEQRALRIEDIAARSETPKRFLEHILLDIRNAGYIASIRG 84 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + QI + D+++ + C + DC SC + V + Sbjct: 85 RSGGYLLIKEPAQIPLSDLLRMIDGPIAPLPCLSRRSYQRCDDCTDETSCRIRKVFAEIF 144 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 ++ ++ ++ LVR ++ ++I A Sbjct: 145 WSYLLLIESLTLADLVRTPAASEQILAA 172 >gi|328552169|gb|AEB22661.1| transcriptional regulator [Bacillus amyloliquefaciens TA208] Length = 167 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y + + I +AE +SE FL K+ L KAGIV +V G Sbjct: 1 MQYSAGVEYALHCLVYLIDVPSKKSVGIRDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109 +GG RL + + I+ DV++A E + +C SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVSNGLLYRDKCNSCESSNSSCTINL 120 Query: 110 VLRKALNAFFDVLTQYSIECL 130 V+ +A L ++ L Sbjct: 121 VMLEAEEQMRKYLRNKTLAWL 141 >gi|317153664|ref|YP_004121712.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis Aspo-2] gi|316943915|gb|ADU62966.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis Aspo-2] Length = 145 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R+ Y R+L+ A+H D P R S +A+ I+ F+ +I++PL +AG+V +VRG Sbjct: 1 MKLSARSRYAARLLLALAMHKGDGPVRTSDLADRTGITAQFIEQIIRPLKQAGMVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R IT+ ++V+ E S +A C C G C + +A A Sbjct: 61 ASGGHLLDRQPAAITLGEIVRTMEGSANIASCLDCDTA-CDRTGDCLTRTAWERASRAME 119 Query: 120 DVLTQYSIECLV 131 L ++ L+ Sbjct: 120 RELDAITLADLM 131 >gi|149908898|ref|ZP_01897558.1| Rrf2 family protein [Moritella sp. PE36] gi|149808172|gb|EDM68113.1| Rrf2 family protein [Moritella sp. PE36] Length = 148 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 4/140 (2%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +T TD+GIR LMY + + + +++AE S + K++ L +E+ RG+ Sbjct: 6 KITTYTDFGIRTLMYLSTLPKGQRSSSAEVAEVYQASRNHIAKVIAHLSSLNYIESSRGK 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + A +I I +V+A E + + F ++ D LV + L ++L+ + AF Sbjct: 66 NGGIWLAKSASEINIGQLVRALENNL---KGFDNNTQDSELVPTYQLKNLLQTGIEAFLK 122 Query: 121 VLTQYSIECLVRNRSSIKKI 140 L QYS+ L+ + + + Sbjct: 123 TLDQYSLADLLDEQREFESL 142 >gi|163940519|ref|YP_001645403.1| BadM/Rrf2 family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229012026|ref|ZP_04169205.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|163862716|gb|ABY43775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus weihenstephanensis KBAB4] gi|228749114|gb|EEL98960.1| Transcriptional regulator [Bacillus mycoides DSM 2048] Length = 133 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAEATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 +GG L + I+ LD++ A E + EC C C + V+ A Sbjct: 61 PKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC-------CLHQEPGCLINEVMLAAEEKM 113 Query: 119 FDVLTQYSIECLVRN 133 + L I L + Sbjct: 114 EEELRNQKIVDLAKK 128 >gi|325971575|ref|YP_004247766.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta sp. Buddy] gi|324026813|gb|ADY13572.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy] Length = 135 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ + Y ++ ++Y A + I I+EA IS +L +++ PL +AG+V+ RG Sbjct: 1 MKLSTKGRYSLQTMVYLATCREN-CSIRSISEATGISSGYLEQLMIPLRRAGLVQAERGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL + IT +V+ A+E F C +CP +C + + D Sbjct: 60 QGGYRLAKSG--ITCAEVLSASEGDFEPVPC-----RNCPRTDACKTHQIWTMLQSTVVD 112 Query: 121 VLTQYSIECLVRN 133 +Q +I+ L + Sbjct: 113 FTSQVTIDELASH 125 >gi|226309029|ref|YP_002768989.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229491718|ref|ZP_04385539.1| transcriptional regulator [Rhodococcus erythropolis SK121] gi|226188146|dbj|BAH36250.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229321399|gb|EEN87199.1| transcriptional regulator [Rhodococcus erythropolis SK121] Length = 149 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RV+M A + D +A+ +S K++ L + GIV T RG Sbjct: 1 MQLTQFTDLGLRVVMRLAVLDADASPSTRDVAQQLNVSYSHATKVVTRLGELGIVTTRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + TI + + E V +C CPL G C L S LR+A AFF Sbjct: 61 RGGGLSITELGRTATIGWLARRLEGPGEVVDCEGDK--PCPLRGGCLLRSALREAQEAFF 118 Query: 120 DVLTQYSIECLVRNRSS 136 L +IE ++R S Sbjct: 119 VSLDAVTIEDVIRQPSK 135 >gi|225568451|ref|ZP_03777476.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM 15053] gi|225162679|gb|EEG75298.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM 15053] Length = 143 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + V+ A+H+D + + IAE +SE +L +I++ L A I+++VR Sbjct: 1 MKISTKGIYALEVVADLALHSDAAHLESLKNIAERRKLSEKYLERIVKALKDAHIIKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG + + Q+T+ +V+KA E +C SC Sbjct: 61 GAYGGYCMAKEPQQLTVREVLKAVEGELAPVDCLTQESSCGIDCRSCPTRDTWAALWQTI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 V + ++ +VR I K Sbjct: 121 AGVADEVTVGDIVRAAEKIDK 141 >gi|329904110|ref|ZP_08273676.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium IMCC9480] gi|327548132|gb|EGF32848.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium IMCC9480] Length = 147 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 8/132 (6%) Query: 11 IRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A+ + P +S I++ IS +L ++ L + IVE+VRG GG L R Sbjct: 1 MTAMIDLALRQSGGPVTLSGISQRQEISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARR 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----CGLTSVLRKALNAFFDVLTQ 124 A+ +T+ D++ A +E +C K +C + C + + + L Sbjct: 61 AEDVTVADIIIAVDEPLDSTQC--GGKENCRKSTAENGTRCMTHDLWSTLNSKMVEYLDS 118 Query: 125 YSIECLVRNRSS 136 S++ LV + Sbjct: 119 VSLKDLVDQQRQ 130 >gi|222086332|ref|YP_002544865.1| hypothetical protein Arad_2848 [Agrobacterium radiobacter K84] gi|221723780|gb|ACM26936.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 156 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ IA I + FL IL L AG++ + +G Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIASRNNIPKKFLDTILLELRNAGVLRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L R A +I I V++ + C + DC C + + + +A Sbjct: 62 GGYSLSRLASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPERCHVRRSMTEVRDA 121 Query: 118 FFDVLTQYSIECLVR 132 D+L ++E V Sbjct: 122 IADILDNMTLEQFVA 136 >gi|152983079|ref|YP_001352722.1| transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283156|gb|ABR91566.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 185 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%) Query: 3 LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ +YG+ L++ + + +AE + FL K+ LVKAG+V + G Sbjct: 4 ISSGVEYGLHCLLFLTRSSAAVEEASVRDLAELQGVPHDFLAKLFTKLVKAGLVVSTEGV 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111 +GGVRL R ++IT+ DV+ A + + +C F S+ G C + +V+ Sbjct: 64 KGGVRLARLPERITVHDVIVAIDGDKSLFDCREIRGRCAVFDSNAPAWATRGVCSIDAVM 123 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 + A A L Q+++ L + Sbjct: 124 QLAEKAMRAELKQHTLADLAQR 145 >gi|108805410|ref|YP_645347.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766653|gb|ABG05535.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter xylanophilus DSM 9941] Length = 156 Score = 130 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 4/135 (2%) Query: 1 MHL--TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + Y +R L+Y A N I+ I L ++L L +A +V + Sbjct: 15 MRLELSSEGRYALRALIYLARVN-RRVTADTISADTGIPRRLLARVLAKLSRARLVRSSE 73 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG L R +QIT+ + V+A E F V C + C C + + A Sbjct: 74 GRGGGSELARSPEQITLREAVEAIEGPFEVTRCIMEERA-CGTGAPCAMHEAWEEGQEAI 132 Query: 119 FDVLTQYSIECLVRN 133 D L ++ V Sbjct: 133 LDYLQGQTLSEFVSQ 147 >gi|269926805|ref|YP_003323428.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] gi|269790465|gb|ACZ42606.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum ATCC BAA-798] Length = 178 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + R +YG+R++M A P ++++AE + +L +++ L + G+V + RG + Sbjct: 9 FSIRAEYGVRLMMMLAREYGKGPLSLARVAEEELLPLPYLEQLIANLRRDGLVVSHRGAK 68 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119 GG L +P ++IT+ +++++ E C + + C C + + +A Sbjct: 69 GGYELAKPPEEITMGEIIRSLEGPIVPMVCATEDESEITCYKGDYCSAQILWSRVRDAVR 128 Query: 120 DVLTQYSIECLVR 132 VL + + Sbjct: 129 QVLDSTKLSEIAN 141 >gi|253681092|ref|ZP_04861895.1| Rrf2 family protein [Clostridium botulinum D str. 1873] gi|253562941|gb|EES92387.1| Rrf2 family protein [Clostridium botulinum D str. 1873] Length = 139 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R+++Y I+E I FL KIL+ L +AGIVE+ RG Sbjct: 1 MKITQEVDYALRIVLYLCKLGFGEKIEAKFISEHENIPIRFLLKILRKLKQAGIVESFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L + I+ D++ A + ++ C K C L + C + + L Sbjct: 61 INGGYALNKYPSDISFKDIILAIDGPIYMNRCLYDPK-SCNLNRANKCVVHNALASVQTT 119 Query: 118 FFDVLTQYSIECLVRNRSSI 137 L + + L+ + Sbjct: 120 LIRKLESITFKNLLDEEYKL 139 >gi|300024335|ref|YP_003756946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] gi|299526156|gb|ADJ24625.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 184 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +Y + L++ + +A+ IS FL KI L KAGIVE G RGG RL Sbjct: 8 VEYALHCLLWLTEPVEQRPSSRDLADLQGISPAFLAKIFAKLEKAGIVEASGGIRGGYRL 67 Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117 RP +I++L+VV A E S + +C F + G C + +V+ +A Sbjct: 68 ARPTSKISVLNVVDAVEGSKPLFDCQEVRGRCALFENKPPKWATKGVCEIHAVMLRAEKV 127 Query: 118 FFDVLTQYSIECLVRNRS 135 D L++ ++ L + Sbjct: 128 LRDELSKTTLASLSDGKR 145 >gi|294629169|ref|ZP_06707729.1| Rrf2 family protein [Streptomyces sp. e14] gi|292832502|gb|EFF90851.1| Rrf2 family protein [Streptomyces sp. e14] Length = 155 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M ++ R DY +R ++ A+ + P + IA IS FL IL L +AG+V + Sbjct: 1 MRISARADYAVRAVLELAVRHGDAPEAPVKAETIAAEQGISHKFLEGILGDLRRAGVVTS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG GG L RPA IT+ DV++A + + L + Sbjct: 61 RRGGGGGYALARPASAITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWIALRA 119 Query: 117 AFFDVLTQYSIECLV 131 +L ++ + Sbjct: 120 NVRRILEGVTLADIA 134 >gi|288906317|ref|YP_003431539.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306832374|ref|ZP_07465527.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979331|ref|YP_004289047.1| BadM/Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733043|emb|CBI14624.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304425414|gb|EFM28533.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179259|emb|CBZ49303.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 133 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R Y IRV++ +N + + IA+ IS+ +L I++ +V ++ GR Sbjct: 2 ISTRGRYAIRVMIDLVENNNGHYIPLKDIAKRQEISKKYLEIIVKEMVAGELLIGASGRG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R ++ T+ +++ E + C A DCP C + + N D Sbjct: 62 GGYKLRRKPEEYTVGEILDLMEGTLSSVACLADKSFDCPRKDKCKTLPMWTEYDNLVHDF 121 Query: 122 LTQYSIECLVRN 133 +I LV N Sbjct: 122 FYGKTILDLVNN 133 >gi|188990792|ref|YP_001902802.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas campestris pv. campestris str. B100] gi|167732552|emb|CAP50746.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas campestris pv. campestris] Length = 152 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A +D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 63 GGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ ++ Sbjct: 122 LRRVTLAQMLH 132 >gi|88799892|ref|ZP_01115464.1| predicted transcriptional regulator [Reinekea sp. MED297] gi|88777323|gb|EAR08526.1| predicted transcriptional regulator [Reinekea sp. MED297] Length = 150 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A++ P ++ I+ IS +L ++ L K G+V +VRG GG RL Sbjct: 1 MLDLALNEQSGPINLADISHRQGISLSYLEQLFSKLRKQGLVSSVRGPGGGYRLGDERSA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I++ VV A ES +C K C C + + D L S++ LV Sbjct: 61 ISVAAVVDAVSESMDATKC--QGKSGCQGGEICLTHHLWQDLSEQIHDFLEDISLQDLV- 117 Query: 133 NRSSIKKI 140 +RS I+ + Sbjct: 118 DRSEIRSV 125 >gi|113867763|ref|YP_726252.1| putative transcriptional regulator [Ralstonia eutropha H16] gi|113526539|emb|CAJ92884.1| putative transcriptional regulator [Ralstonia eutropha H16] Length = 185 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++ +Y + L+Y + +AE + FL K+ L KA +V G Sbjct: 3 QISTGVEYSLHCLLYLTHSQSAVEEASVRDLAELQGVPHDFLAKLFTKLAKAKLVVATEG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110 +GG RL RPA+ IT+ DVV A + + +C F G C + +V Sbjct: 63 IKGGFRLARPANHITVHDVVVAIDGEKPLFDCLEIRGRCAVFNDDAPGWATRGVCSIQAV 122 Query: 111 LRKALNAFFDVLTQYSIECL 130 ++ A A L ++++ L Sbjct: 123 MQAAEKAMRAELKRHTLADL 142 >gi|148253999|ref|YP_001238584.1| BadM/Rrf2 family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406172|gb|ABQ34678.1| transcriptional regulator, BadM/Rrf2 family [Bradyrhizobium sp. BTAi1] Length = 158 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG++ L++ A + + IAE IS+ FL IL+ L +AG+V +G Sbjct: 2 LSAKGKYGLKALIHLASLEPGEQALSADIAETNNISKKFLDAILRELRQAGLVRAKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L RPA I + ++ + C + DC +C + + + +A Sbjct: 62 GGYALARPARSIKVGQAIRHLDGPLAPIACASRSAYRPCRDCRDPKACAVRLTMTQVRDA 121 Query: 118 FFDVLTQYSIECLVRNRS 135 VL Q ++ L Sbjct: 122 ISGVLDQMTLYELAEQER 139 >gi|298368426|ref|ZP_06979744.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sp. oral taxon 014 str. F0314] gi|298282429|gb|EFI23916.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria sp. oral taxon 014 str. F0314] Length = 148 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +A +VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAQLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ C K +C C + Sbjct: 61 PGGGYILAAPASEINIAQIIAAAEDRLDATRC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRS 135 D L+ +++ ++ ++ Sbjct: 119 DYLSSVTLQSIIEQKN 134 >gi|295836021|ref|ZP_06822954.1| Rrf2 family protein [Streptomyces sp. SPB74] gi|295825840|gb|EFG64521.1| Rrf2 family protein [Streptomyces sp. SPB74] Length = 161 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + DY R L+ A ++P +A + I FL ++ L +AG+V + RG Sbjct: 1 MQISAKADYAARALVELASRPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++I++LDVV+A + + P + L + R + Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGTVPAHLAYP-GPAAALPGLWRTLEERARE 119 Query: 121 VLTQYSIECLVRNRSS 136 +L S+ L R + Sbjct: 120 LLGAVSLASLAREAAQ 135 >gi|222099072|ref|YP_002533640.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] gi|221571462|gb|ACM22274.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] Length = 138 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 6/136 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVRGR 60 T R++Y +R+++ A D +++I E + F KIL L K+GIVET RG+ Sbjct: 2 FTMRSEYALRLMIVMAKEYDRYLSMTEILEKAKNSVPREFAEKILYTLRKSGIVETKRGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RP +I + D++ + V CP C + S+ ++ Sbjct: 62 TGGYRLARPPKEIRVSDIIFLLDRKARVF----FDMPGCPDELDCVIRSLWKRVEEEIEK 117 Query: 121 VLTQYSIECLVRNRSS 136 VL ++E LV+ + Sbjct: 118 VLGSVTLEDLVKEQEE 133 >gi|104781179|ref|YP_607677.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110166|emb|CAK14873.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 178 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L++ + +AE + + +L K+ L +AG+V Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGDSREASVRDLAELQGVPQEYLAKVFTKLARAGLVVAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG RL RP+D+IT+LD+V A + + + +C F G+C + Sbjct: 61 EGVRGGFRLARPSDEITVLDIVTAIDGAKKIFDCREIRERCAVFEGSAPGWATEGTCAIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 +V+ A + L Q +I L R Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145 >gi|89897247|ref|YP_520734.1| hypothetical protein DSY4501 [Desulfitobacterium hafniense Y51] gi|219666882|ref|YP_002457317.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|89336695|dbj|BAE86290.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537142|gb|ACL18881.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 126 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 7/132 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ TDY + +++ A + + + ++AE +S +L KIL LVK G++ + G Sbjct: 1 MKYSRATDYALHTILFLARNGSEKKLGVQELAEKQNVSPTYLSKILNKLVKEGMIHSSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++I+ D+++A E + +C + + C + V+ A Sbjct: 61 VNGGYSLGPHWEKISFFDIIQAIEGKTSLFDCCLNSNPE------CSIKKVMLAAEKNME 114 Query: 120 DVLTQYSIECLV 131 + L I LV Sbjct: 115 EELRTKKISELV 126 >gi|149277390|ref|ZP_01883531.1| transcriptional regulator, rrf2 family protein [Pedobacter sp. BAL39] gi|149231623|gb|EDM37001.1| transcriptional regulator, rrf2 family protein [Pedobacter sp. BAL39] Length = 145 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y I+ L+ + + P +I ++AE I FL +IL + AG + + +G Sbjct: 2 LSKKTKYAIKALVALGKNVGNPPMQIVKLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + A I + D+++ T+ + C F +C +CG+ NA Sbjct: 62 GGYSLNKDAADIFLADILRITDGPIAMVPCASLKFYRKCDECHDEVTCGIRKTFIDVRNA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL Q SI ++ + Sbjct: 122 TLKVLAQTSIADVIGRETD 140 >gi|239834406|ref|ZP_04682734.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] gi|239822469|gb|EEQ94038.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] Length = 232 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 84 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 143 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALNAF 118 GG L RPA++I I ++++A + + C + D C + ++ A Sbjct: 144 GGFCLARPANEIAIGNIIRALDGALAPIACASKTDYRPCDDCDEDECEVRQMMLDVREAI 203 Query: 119 FDVLTQYSIEC 129 VL ++ Sbjct: 204 ASVLDHRTLAD 214 >gi|296535637|ref|ZP_06897815.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296264032|gb|EFH10479.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 151 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ + P +++IA+A +S +L ++ L +AG+V++ RG GG RL RPA+ I I Sbjct: 24 AVTRERPVSLAEIAQAQLLSVAYLEQLFARLRRAGLVDSARGPGGGYRLARPAEAIAIGT 83 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 +++A +E C C C + + L ++ +V R Sbjct: 84 IIEAVDEPISATRC-EEGSPGCLAGNRCLTHDLWHELGEQIRLFLENVTLADVVEQR 139 >gi|160942312|ref|ZP_02089621.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC BAA-613] gi|158434869|gb|EDP12636.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC BAA-613] Length = 179 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R L+Y A + + +I +A I+ +F+ K+L+ L AG V +++G Sbjct: 26 MQLTMTTDYALRCLLYLAG-KEGVSSSPEIGKAVGINNIFVQKVLRVLRDAGFVSSLKGG 84 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + ++I +LD++ E++ + C + C +C + + Sbjct: 85 TGGYWLAKKPEEIVLLDIILLFEKTMKINRCLEAEGC-CERYETCPMHVYYAEVQETLEG 143 Query: 121 VLTQYSIECLVRNRSSIKK 139 Q +++ ++ + +K Sbjct: 144 YFGQATLQDVINHGKIKRK 162 >gi|223044133|ref|ZP_03614172.1| Rrf2 family protein [Staphylococcus capitis SK14] gi|314933791|ref|ZP_07841156.1| Rrf2 family protein [Staphylococcus caprae C87] gi|222442527|gb|EEE48633.1| Rrf2 family protein [Staphylococcus capitis SK14] gi|313653941|gb|EFS17698.1| Rrf2 family protein [Staphylococcus caprae C87] Length = 140 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PAD+IT D+++ E E S + + ++ Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDSVR 112 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL +++ L + + + + Sbjct: 113 DVLDNTTLKYLADYKETNEDL 133 >gi|119493246|ref|ZP_01624086.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp. PCC 8106] gi|119452719|gb|EAW33897.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp. PCC 8106] Length = 147 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ + P ++ IA + +L K+L + +AG+VE+VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLQQEFGPTSVNAIAHRQKLPAPYLEKLLIEMRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R +I++ +++A ES H+ + L ++ + Sbjct: 61 SQGGYQLSRSPAKISLGQILEAVGESIEP---LPRHQPNAELAEDWVTFTLWNRLHQKLK 117 Query: 120 DVLTQYSIECL 130 + L S+E L Sbjct: 118 EALYSISLEDL 128 >gi|254521010|ref|ZP_05133065.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14] gi|219718601|gb|EED37126.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14] Length = 151 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG R Sbjct: 3 RVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA +I++ +VV+A E + EC H C + CG S R + + Sbjct: 63 GGYRLTRPALEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWRLINDVVSEA 121 Query: 122 LTQYSIECLV 131 L ++ ++ Sbjct: 122 LRDVTLAQIL 131 >gi|166711249|ref|ZP_02242456.1| hypothetical protein Xoryp_07195 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 152 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A I+++++V+A E + EC +H C + +CG+ S R + D Sbjct: 63 GGYRLARAASDISLVEIVEAMEGPLAITECSQNHS-QCGIAHTCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L ++ +++ Sbjct: 122 LRHVTLAQMLQ 132 >gi|148555827|ref|YP_001263409.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501017|gb|ABQ69271.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 134 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + +L A H + +++ + K++ L +AG++ + RG Sbjct: 1 MRLSSLADYAVVMLSAAARHGAGERLTATLLSDETGVPLPTAQKLMGRLAQAGLLASARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R I++ D+V+A E + C H+ DC L +C + + Sbjct: 61 TGGGFRLARDPGAISLADIVEAVEGPIAMTACVDDHRHDCGLESACRVKPHWGVVNDTIR 120 Query: 120 DVLTQYSIECLVR 132 L S+ L R Sbjct: 121 GALGGVSLATLSR 133 >gi|296447784|ref|ZP_06889698.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296254703|gb|EFH01816.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 144 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 5/143 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + YG++ L++ A IA+ I FL IL L AGI+ + +G+ G Sbjct: 2 LSNKAKYGLKALIHLAGAEGQ-CLAGDIAKENNIPRKFLDAILVELRNAGIINSKKGKHG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118 G L RPA+++T+ +++ + C + DCP +C + ++ + Sbjct: 61 GYLLARPAEKVTVGQIIRILDGPLAPIACASKTAYQRCADCPDEDACAIHDIMLDVRESI 120 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 +L + SI L S ++ Sbjct: 121 ALILDRTSIASLRERGSREARVL 143 >gi|325263739|ref|ZP_08130472.1| Rrf2 family protein [Clostridium sp. D5] gi|324030777|gb|EGB92059.1| Rrf2 family protein [Clostridium sp. D5] Length = 142 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + ++ A+H+ ++ + IA +SE +L +I++ L + GIV++VR Sbjct: 1 MKMSTKGQYALEIVADLAMHSSKEHLESLKNIANRRDLSEKYLERIIKALREKGIVKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L + + + +L+V+ A E C G C + + Sbjct: 61 GAYGGYCLEKAPEDLMVLEVLTAVEGELTPVHCLTRESNCGIDCGLCPTRNTWSDMWSVM 120 Query: 119 FDVLTQYSIECLVR 132 + Q ++ +VR Sbjct: 121 KGAVEQVTVADIVR 134 >gi|163790053|ref|ZP_02184488.1| transcriptional regulator [Carnobacterium sp. AT7] gi|159874753|gb|EDP68822.1| transcriptional regulator [Carnobacterium sp. AT7] Length = 137 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A+ N+ R+ +A+ IS +L KIL L KAG++ + G Sbjct: 1 MKYSKATNYALHSMVHLAMESNNEAVRVEDLAKHQRISPTYLSKILTKLAKAGLITSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL ++ T LD+++A E + C SH C + + A + Sbjct: 61 VKGGYRLLLSPEKCTFLDIIQAIEGQESLLNCTMSHDGKWNR--DCLIERAVADAEDKMK 118 Query: 120 DVLTQYSIECLVRN 133 D L +I ++ Sbjct: 119 DELAHKTIAGILNQ 132 >gi|284050305|ref|ZP_06380515.1| transcriptional regulator, BadM/Rrf2 family protein [Arthrospira platensis str. Paraca] gi|291569875|dbj|BAI92147.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 147 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ A + + P + IA I +L K+L + + G+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLAMLGSSGPVSVRAIASRQNIPAPYLEKLLIEMRRRGLVISVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L P QI++ +++A E+ ++H+ D + ++ + Sbjct: 61 SQGGYKLAYPPAQISLGQILEAVGETIEP---LSNHQPDAEQIEDWVTFTLWNRLHEKLK 117 Query: 120 DVLTQYSIECL 130 + L S+E L Sbjct: 118 EALYSISLEDL 128 >gi|325104343|ref|YP_004273997.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324973191|gb|ADY52175.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 148 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 5/147 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+T Y ++ LM A + + P I++IA+ + + FL IL L + I+ + G Sbjct: 2 LTKKTKYAVKALMALARNGENKPMLIAEIAKQEGLPKRFLEAILLDLKRGQILGSRMGAG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA +I +++V++ + + C F +C +C + ++ + +A Sbjct: 62 GGYFLVKPASEIMVVNVIRILDGPIALLPCVSLNFYQRCEECVDEVTCSIREMMGRVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 +++ SI LV + + G Sbjct: 122 SIEIMGHTSIADLVAKEKELGGNLSEG 148 >gi|254491784|ref|ZP_05104963.1| rrf2 family protein (putative transcriptional regulator) [Methylophaga thiooxidans DMS010] gi|224463262|gb|EEF79532.1| rrf2 family protein (putative transcriptional regulator) [Methylophaga thiooxydans DMS010] Length = 135 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ +++ ++ I+E IS +L ++ L K G+V + RG GG RL R A+ Sbjct: 1 MLDLSLNYGLGAITLADISERQGISLSYLEQLFARLRKQGLVSSSRGPGGGYRLSRSAED 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 IT+LDV+ A +E +C + +C C + + + L ++ +V Sbjct: 61 ITVLDVISAVDEKVDSTQC--EGRKNCHGDEKCLSHELWQSLSDQIRVYLDGITLAEVV 117 >gi|294788961|ref|ZP_06754201.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella muelleri ATCC 29453] gi|294483063|gb|EFG30750.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella muelleri ATCC 29453] Length = 148 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ D+ +++ I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQDHAVKLNAISERQHISLSYLEQLFSKLRRAGLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ADQI I ++ A E+ C S K +C C ++ + Sbjct: 61 PGGGYILGKAADQINIAQIIAAAEDCLDATLC--SGKANCQSGSPCLTHNLWANLNHTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 L+ ++ L+ Sbjct: 119 SYLSSITLASLLEQPPP 135 >gi|21232196|ref|NP_638113.1| hypothetical protein XCC2765 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767675|ref|YP_242437.1| hypothetical protein XC_1348 [Xanthomonas campestris pv. campestris str. 8004] gi|21113952|gb|AAM42037.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573007|gb|AAY48417.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 152 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A +D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 63 GGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ ++ Sbjct: 122 LRRVTLAQMLH 132 >gi|218516163|ref|ZP_03513003.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 123 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121 >gi|228908509|ref|ZP_04072350.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|228851156|gb|EEM95969.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 133 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + +AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHHLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + I+ LD++ A E + +C K C + + A Sbjct: 61 PKGGYSLSNKWEDISFLDIIHAIEGKTSLFDCCLHDKPG------CLINEAMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVDLAQK 128 >gi|331270571|ref|YP_004397063.1| rrf2 family protein [Clostridium botulinum BKT015925] gi|329127121|gb|AEB77066.1| rrf2 family protein (putative transcriptional regulator) [Clostridium botulinum BKT015925] Length = 139 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R+++Y IAE I FL KIL+ L ++GIVE+ RG Sbjct: 1 MKITQEVDYALRIVLYLCKLGFGEKIEAKFIAEHENIPIRFLLKILRKLKQSGIVESFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L + I+ D++ + + ++ C K C L S C + + L Sbjct: 61 INGGYALNKYPADISFKDIIISIDGPIYMNRCLYDPK-SCNLNRSNRCVVHNALASIQTT 119 Query: 118 FFDVLTQYSIECLVRNRSSI 137 L + + L+ + Sbjct: 120 LITKLESITFKDLLDEYYKL 139 >gi|170076761|ref|YP_001733399.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7002] gi|169884430|gb|ACA98143.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7002] Length = 147 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 4/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA+ + +L K+L + +AGI+ +VRG Sbjct: 1 MKLTTRGHYSVKALLDISLQPGYGPTSVKAIAKRQNLPAPYLEKLLIEMRRAGILRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + I++ +++A E+ H S+ ++ Sbjct: 61 AQGGYQLLSKPEDISLGQILQAIGETIEPLPHHEPHPDQ---AEDWVTFSLWQRLHQKLQ 117 Query: 120 DVLTQYSIECLVRNRSSIK 138 + L ++ L + S K Sbjct: 118 EALYNITLADLYYDARSWK 136 >gi|229488650|ref|ZP_04382516.1| transcriptional regulator [Rhodococcus erythropolis SK121] gi|229324154|gb|EEN89909.1| transcriptional regulator [Rhodococcus erythropolis SK121] Length = 154 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 13/152 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ + + + ++ P +++AE +S+ +L K L+ L AG+V GR Sbjct: 1 MKLSGGVEWSLHCCVVLS-QSEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R ++IT+LDVV+A + + C A+ C +CG+ V+ Sbjct: 60 DGGYVLTRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQC--RSACGIAKVMA 117 Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142 A A+ L+ +I L + +++KI Sbjct: 118 DAEKAWRASLSGVTIADLAATLDLPALRKILT 149 >gi|21243661|ref|NP_643243.1| hypothetical protein XAC2934 [Xanthomonas axonopodis pv. citri str. 306] gi|294626272|ref|ZP_06704875.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664777|ref|ZP_06730103.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21109239|gb|AAM37779.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gi|292599418|gb|EFF43552.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605464|gb|EFF48789.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 152 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 63 GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 122 LRRVTLAQMLQ 132 >gi|163858175|ref|YP_001632473.1| RF2 family protein [Bordetella petrii DSM 12804] gi|163261903|emb|CAP44205.1| probable RF2 family protein [Bordetella petrii] Length = 162 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +AG+VET G Sbjct: 1 MILKSQVEWALHSCAILAGLPPGRYLSTKALAELHGVPKEYLSKALQALSQAGLVETTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113 GG RL RP +IT LD+V+A E C C G C + V+ + Sbjct: 61 PSGGYRLARPGSEITFLDIVEAVEGRASTFACNNIRVNNPCRPSGHCDSKPCAIARVMWR 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A+ + L + ++ ++ Sbjct: 121 ADEAWRNALREVTLADVID 139 >gi|78048634|ref|YP_364809.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037064|emb|CAJ24809.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 152 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG Sbjct: 3 RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A IT++++V+A E + EC H C + CG+ S R + D Sbjct: 63 GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 121 Query: 122 LTQYSIECLVR 132 L + ++ +++ Sbjct: 122 LRRVTLAQMLQ 132 >gi|119385536|ref|YP_916592.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119375303|gb|ABL70896.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 159 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%) Query: 3 LTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++++T Y I+ LM A I +IA+ + FL I+ L AG V + RG Sbjct: 13 ISQKTKYAIKALMALADEVAAGGNALTIEEIAQRSGAPKRFLEHIMLELRNAGYVGSRRG 72 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + +I+I ++++ + C + DC +C L + + Sbjct: 73 RAGGYVLIKRPKEISIGELLRQVDGPIAPLPCLSRRSYQRCEDCTDEATCRLRRMFGQVF 132 Query: 116 NAFFDVLTQYSIECLVRN 133 ++ ++ ++E LV Sbjct: 133 WSYLLLIESLTLEDLVAE 150 >gi|222151511|ref|YP_002560667.1| hypothetical protein MCCL_1264 [Macrococcus caseolyticus JCSC5402] gi|222120636|dbj|BAH17971.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 140 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 10/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++++VR Sbjct: 1 MKISTKGRYGLTLMISLAKRYDKGETVSLKTIAEENHLSDLYLEQLVGPLRNAGLIKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG +L + ++T ++++ E E + +A Sbjct: 61 GARGGYKLMKHPKEVTTSEIIRLLEGPITPVEGIEDEPP--------AQKQLWIDIRDAV 112 Query: 119 FDVLTQYSIECLVRNRSS 136 VL + ++ L+ + S Sbjct: 113 KKVLDETTLYDLMHYKES 130 >gi|224476724|ref|YP_002634330.1| hypothetical protein Sca_1238 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421331|emb|CAL28145.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 139 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PAD+I D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPISFVESIDSEPP--------AQKELWLRMRDAVR 112 Query: 120 DVLTQYSIECLVR 132 +VL +++ L Sbjct: 113 EVLDGTTLKYLAE 125 >gi|190573183|ref|YP_001971028.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011105|emb|CAQ44714.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 151 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG R Sbjct: 3 RVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA +I++ +VV+A E + EC H C + CG S R + + Sbjct: 63 GGYRLTRPAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWRLINDVVSEA 121 Query: 122 LTQYSIECLV 131 L ++ ++ Sbjct: 122 LRDVTLAQIL 131 >gi|116695452|ref|YP_841028.1| iron sulfur cluster assembly transcriptional regulator (SufA) [Ralstonia eutropha H16] gi|113529951|emb|CAJ96298.1| iron sulfur cluster assembly transcriptional regulator (SufA) [Ralstonia eutropha H16] Length = 156 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDYG ++ + A + +++A A ++ KIL+ L + ++E++RG Sbjct: 3 RLSKLTDYGTVIMTHLARNPGRIYSAAEVAAAIGVAVPTASKILKMLARHHLLESLRGAN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP QI+I V+ A E + EC + + C G C + + + F Sbjct: 63 GGYLLARPPGQISIAQVIDAMEGPAGMTECSVAAGL-CAQEGLCAIRANWQSINQVIFSA 121 Query: 122 LTQYSIECLVR 132 L ++ + + Sbjct: 122 LNGVTLADMAQ 132 >gi|218462293|ref|ZP_03502384.1| iron-responsive transcriptional regulator [Rhizobium etli Kim 5] Length = 89 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 56/89 (62%), Positives = 72/89 (80%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T+Y +R+LMYCA ++ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLSKAGLVETVRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89 GGVRL +PA IT+ DVV+ TE+SF +A Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMA 89 >gi|310777893|ref|YP_003966226.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] gi|309747216|gb|ADO81878.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] Length = 165 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 19/144 (13%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + +YG+ L+Y H + + +++ ISE +L K+ L K+GIV + G Sbjct: 3 QFSIGVEYGLHCLLYLVDHPEGKAISVKELSTFQGISETYLSKVFTKLKKSGIVRSTPGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSCG 106 +GG L R + I+ DV++A E + + +C + DCP C Sbjct: 63 KGGYELARDSKDISFWDVIEAIEGNSNLFQCAGILKSTVINTEEEVEKYSGDCP----CI 118 Query: 107 LTSVLRKALNAFFDVLTQYSIECL 130 + +V+ A L + S+ L Sbjct: 119 IKNVMLDAEEQMRIYLREKSLYWL 142 >gi|229110219|ref|ZP_04239793.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|228673205|gb|EEL28475.1| Transcriptional regulator [Bacillus cereus Rock1-15] Length = 133 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G Sbjct: 1 MKYSKATNYALHTILFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + I+ LD++ A E + EC K C + V+ A Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114 Query: 120 DVLTQYSIECLVRN 133 + L I L + Sbjct: 115 EELRNQKIVALAKK 128 >gi|298247460|ref|ZP_06971265.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297550119|gb|EFH83985.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 168 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ ++G+ A + +AE +SE +L K LQ L + GI+E+V G Sbjct: 1 MKLSEGVEWGLHCTSVLASLPTKATLPTKALAEYHGVSETYLSKHLQALTRGGIIESVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113 RGG RL RPA +IT+LDVV+A + C + C + S C + + + Sbjct: 61 PRGGYRLARPATEITLLDVVEAIDGPEPAFRCTEIRQQGPCAIESSAYHLPCTIHVAMAR 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A + + L +I +V Sbjct: 121 AEKLWRNELRAQTIADIVAQ 140 >gi|256826636|ref|YP_003150595.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256582779|gb|ACU93913.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 150 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ H P + IA+ IS+ +L +++ L GI++ RG Sbjct: 1 MQISTKGRYALRFLLDLCQHQGTGPVPLKDIAQRQGISKKYLEQVIALLNPTGILQVTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-------VLR 112 +GG RL + IT+ DV+ TE F +D + L+S + Sbjct: 61 YQGGYRLAKAPRDITVADVLAVTESGFTAGAASTGTNVDTTERSASLLSSNETMLEPIWE 120 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 D L + S++ ++ + Sbjct: 121 GLEQTVNDYLAEISLQDIIDRYTP 144 >gi|332971653|gb|EGK10602.1| iron-sulfur cluster assembly transcription regulator IscR [Psychrobacter sp. 1501(2011)] Length = 175 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 10/151 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT R Y + L+ AI + +S IA+ IS +L ++ L KAG+V + Sbjct: 1 MRLTTRGRYAVTALLDLAIQDGDSSSAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L +P ++I ++ ++ A +ES + +C C + Sbjct: 61 RGASGGYHLAKPLNEIDVMTIITAVDESVNAM--QCGGQGNCQGGAMCLTHDLWCALSMH 118 Query: 118 FFDVLTQYSIECL-----VRNRSSIKKIFNA 143 L S++ L V++ S +++ + Sbjct: 119 IEQYLKNISLDQLLEMENVKDVSHRQQLLHE 149 >gi|228475199|ref|ZP_04059925.1| Rrf2 family protein [Staphylococcus hominis SK119] gi|314936260|ref|ZP_07843607.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80] gi|228270810|gb|EEK12212.1| Rrf2 family protein [Staphylococcus hominis SK119] gi|313654879|gb|EFS18624.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80] Length = 140 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 12/141 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ ++RG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENHLSDLYLEQLVGPLRNAGLIRSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L P+++I+ D+++ E + E S + + +A Sbjct: 61 AKGGYQLRVPSEEISAGDIIRLLEGPITIVESIDSEPP--------AQKELWLRMRDAVR 112 Query: 120 DVLTQYS---IECLVRNRSSI 137 +VL + + V + + + Sbjct: 113 EVLDNTTLKYLADFVESDNDL 133 >gi|209545272|ref|YP_002277501.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532949|gb|ACI52886.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 180 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 T+Y + L++ + + P +A+ I F+ K+L L KAG++E G RGG RL Sbjct: 8 TEYVLHSLLWLVGNPE-PVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66 Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117 RPA+ I++L VV A E + C F G CG+ +V+ +A A Sbjct: 67 ARPAEDISVLAVVDAVEGRKSLFNCQEIRGRCALFDERPPRWATQGVCGIHAVMLRAEQA 126 Query: 118 FFDVLTQYSIECL---VRNRSSIKKIFNA 143 + + S+ L VR+++ + + +A Sbjct: 127 MRQEMARTSLADLARSVRDKAPLPFLGDA 155 >gi|161870250|ref|YP_001599421.1| DNA-binding protein [Neisseria meningitidis 053442] gi|161595803|gb|ABX73463.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis 053442] Length = 164 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 17 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 76 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ +C K +C C + Sbjct: 77 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 134 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ +++ Sbjct: 135 DYLGSVTLQSIIEQKNN 151 >gi|328956203|ref|YP_004373536.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] gi|328456527|gb|AEB07721.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] Length = 162 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY R+L + AE + F I L K G +E++RG Sbjct: 1 MDISRKTDYAFRILAMLVGSKGSLLSVRTAAEEMDVPYSFARSIQHELTKVGFIESLRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL IT+ D+++A + V +C K CP SC + A D Sbjct: 61 RGGMRLKIDPASITVNDIIEAMQGPLVVNKCLKDGKP-CPRRESCCYHPIWIGAKALLRD 119 Query: 121 VLTQYSIECLVR 132 L+ ++E V Sbjct: 120 YLSSVTLEEAVN 131 >gi|269119309|ref|YP_003307486.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sebaldella termitidis ATCC 33386] gi|268613187|gb|ACZ07555.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis ATCC 33386] Length = 164 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH + +Y + L+Y A + P + ++AE ISE +L KI L K GIV+ G Sbjct: 1 MHYSVGVEYALHCLIYLATPSVKPVLTVKELAEFQGISETYLSKIFTKLSKNGIVKATPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108 GG +L + +T DVV+A E + C + +CP C + Sbjct: 61 VTGGYQLKQDPSVVTFWDVVQAVEGEKQIFRCKNIIGTCALHDKKTEAEECPGKVDCLIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 V+ A L + +++ L Sbjct: 121 DVMLDAEKQMELYLKEKNLKWLTEK 145 >gi|85375385|ref|YP_459447.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] gi|84788468|gb|ABC64650.1| predicted transcriptional regulator [Erythrobacter litoralis HTCC2594] Length = 136 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + + + A H +++A + + K++ L AG++ +VRG Sbjct: 1 MRLSNLADYAVVTMSHAARHCGGGRVSAAELAAETGLPVPTVQKVVSKLTAAGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG++L RPA I + D+V+A E + C DC + +C + NA Sbjct: 61 AGGGLQLARPAAAINVADIVEAVEGPIALTACIDG--TDCAVDHNCTVKPHWPLINNAMR 118 Query: 120 DVLTQYSIECLVRNRS 135 L + L + Sbjct: 119 GALAGIPLTQLAAEKE 134 >gi|226308877|ref|YP_002768837.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187994|dbj|BAH36098.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 154 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ + + + + P +++AE +S+ +L K L+ L AG+V GR Sbjct: 1 MKLSGGVEWSLHCCVVLS-QAEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R ++IT+LDVV+A + + C A+ C +CG+ V+ Sbjct: 60 DGGYVLTRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQC--RSACGIAKVMA 117 Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142 A A+ L+ +I L + +++KI Sbjct: 118 DAEKAWRASLSGVTIADLAATLDLPALRKILT 149 >gi|288549656|ref|ZP_05967727.2| transcriptional regulator, BadM/Rrf2 family [Enterobacter cancerogenus ATCC 35316] gi|288317777|gb|EFC56715.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cancerogenus ATCC 35316] Length = 174 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI LM A + + ++A + +L KI L +AG+V + G+ Sbjct: 11 SSGVEYGIHSLMCMVDAKGCEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVSSTEGKG 70 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG +L RPA+ I++LDV A + + EC F G CG+ SV+ Sbjct: 71 GGFKLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMD 130 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L++++I L R Sbjct: 131 SAQQRMEEELSRHTILDLARK 151 >gi|89098510|ref|ZP_01171393.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89086755|gb|EAR65873.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 133 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + T+Y + +++ + + + ++AE +S +L K+L L KAG++E+ G Sbjct: 1 MKYSNATNYALHTMVHLMLEPGEGTVGVQELAEMQHLSPTYLSKVLTKLAKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG ++ R +I+ LDV+ A E + +C H+ C + +V+R+A Sbjct: 61 AKGGYKISRKKHEISFLDVIHAIEGETSLFDCSIHHEG-------CLIENVMRQAEENMK 113 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + + + S +K Sbjct: 114 SELASKLLIDIAKEAESQRK 133 >gi|119357736|ref|YP_912380.1| BadM/Rrf2 family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119355085|gb|ABL65956.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides DSM 266] Length = 141 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 H++++ +YG+ + Y A + ++A+ S+ FL K +Q L KAGI+ +V+G Sbjct: 3 HVSRKFEYGLHAVSYLATRGAGRVVTVKEMADDIGFSQEFLSKAMQSLKKAGIIASVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L +P IT+ D+ +A E + C + + C + C + N + Sbjct: 63 KGGYTLAKPLSGITVADIGEAIEGKPHLTRCASD--LYCEIASKCTHKQYMNLLQNKIQE 120 Query: 121 VLTQYSIECLVRNRSSIKKI 140 + ++E L+ S+ ++ Sbjct: 121 FMGATTLETLIEGDDSLPQL 140 >gi|194333370|ref|YP_002015230.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311188|gb|ACF45583.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris aestuarii DSM 271] Length = 160 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L TK TDY IR L+ A H + +IAE I FL +LQ LV+AG + + G Sbjct: 1 MQLLTKHTDYAIRALLTLAGHGEGYLSARRIAEEQQIPYQFLRGLLQELVRAGFISSREG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGV+L + + I++ +V+ + S ++EC ++ C +C L + K Sbjct: 61 AHGGVKLIKDPETISVREVIALFQGSIELSECMFRKQM-CVNRANCVLRHQILKIERMVS 119 Query: 120 DVLTQYSIECLVRN 133 + +I L+ + Sbjct: 120 AEFDKVTIGSLLHD 133 >gi|295689542|ref|YP_003593235.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431445|gb|ADG10617.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis ATCC 21756] Length = 158 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ + Y + + A D +++IA IS +L ++ L + G+V + Sbjct: 1 MRLSTKGRYAVMAMTDLAKRQDEGEGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVG-SCGLTSVLRK 113 RG GG RL + + + I D+V A +E C C G C ++ + Sbjct: 61 ARGPGGGYRLAKASTETFIADIVLAVDEPLRATRCNFTKGQAKGCMAGGERCMTHNLWEE 120 Query: 114 ALNAFFDVLTQYSIECLVRNR 134 L S+ +++ Sbjct: 121 MGRQIHGYLASVSVADVLKGE 141 >gi|210610735|ref|ZP_03288595.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787] gi|210152299|gb|EEA83306.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787] Length = 483 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR++ Y A + S+++ +S ++ KI + L A IV G Sbjct: 1 MQLKNSTDYAIRIVCYLAAQ-ERMVSTSELSRKLNVSANYVPKIAKKLKNAKIVTACEGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118 GG L + + I++++++ EE+ + C + C L +C + +L N + Sbjct: 60 NGGYMLAKQPENISLMEIISCVEETMAINRCLEEDRF-CSRNLEDTCKIHKILLSLQNTY 118 Query: 119 FDVLTQYSIECLVRNRSS 136 + L + ++R Sbjct: 119 NNKLESVKVSDVIRPGED 136 >gi|289550608|ref|YP_003471512.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis HKU09-01] gi|315658103|ref|ZP_07910975.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289180140|gb|ADC87385.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis HKU09-01] gi|315496432|gb|EFU84755.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 140 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 12/141 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IA +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAAENSLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PA++IT D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112 Query: 120 DVLTQYS---IECLVRNRSSI 137 DVL + + V + + Sbjct: 113 DVLDNTTLKYLADYVETEADL 133 >gi|319786706|ref|YP_004146181.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Pseudoxanthomonas suwonensis 11-1] gi|317465218|gb|ADV26950.1| transcriptional regulator, BadM/Rrf2 family [Pseudoxanthomonas suwonensis 11-1] Length = 154 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 68/129 (52%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A +++AE + + + K+L+PL +AG+VE +RG R Sbjct: 3 RVTKLTDYATVVLTVLAARPGEVLSAAELAEQSGLEQPTVSKLLKPLAQAGLVEGLRGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R AD+IT++++V+A E + EC + C + CG+ S R + D Sbjct: 63 GGYRLSRDADRITLIEIVEAMEGPLAMTECSQAGANQCGIAHQCGVRSNWRLINDVVADA 122 Query: 122 LTQYSIECL 130 L ++ + Sbjct: 123 LRGVTLAQM 131 >gi|294677420|ref|YP_003578035.1| FeS assembly cluster transcription factor IscR [Rhodobacter capsulatus SB 1003] gi|294476240|gb|ADE85628.1| FeS assembly cluster transcription factor IscR [Rhodobacter capsulatus SB 1003] Length = 152 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ A + +++I++ IS +L ++ L +AG+V +VRG Sbjct: 1 MKLSTKGRYAMVALVDLATVGPGQMTSLAEISKRQDISLPYLEQLFVRLRRAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG +L + +I I +V +A +E+ A + L + L ++L+A Sbjct: 61 PGGGYKLAKTPAEIRISEVFEAVDETVSALHVGAGASGGISGSRAQSLANRLWESLSAQV 120 Query: 119 FDVLTQYSIECLVRN 133 F L Q ++E +V+N Sbjct: 121 FVFLHQTTLEDVVKN 135 >gi|158336452|ref|YP_001517626.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306693|gb|ABW28310.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina MBIC11017] Length = 147 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ + P ++ I++ + +L K+L L +AG+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPNFGPASVNVISQRQSLPAPYLEKLLIELRQAGLVRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L RP QI++ +++A E+ E F ++ ++ Sbjct: 61 SKGGYQLARPPVQISLGHILEAVGET---VEPFTEKSAATQQAEDWVTLTLWKRLHQKLK 117 Query: 120 DVLTQYSIECL 130 + L S+E L Sbjct: 118 ESLYSISLEDL 128 >gi|167033277|ref|YP_001668508.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida GB-1] gi|166859765|gb|ABY98172.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida GB-1] Length = 179 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%) Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + +YGI L++ + + +AE + + +L K+ L +A +V Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGDSRESSVRDLAELQGVPQEYLAKVFTKLARAKLVVAT 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG L RP+D+IT+LD+V A + + +C F G+C + Sbjct: 61 EGVRGGFHLARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFDGAAPGWATEGTCAIH 120 Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133 +V+ A + L Q +I L R Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145 >gi|108760111|ref|YP_629412.1| Rrf2 family protein [Myxococcus xanthus DK 1622] gi|108463991|gb|ABF89176.1| Rrf2 family protein [Myxococcus xanthus DK 1622] Length = 172 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 3/146 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDYGI ++ A ++A + K+L+ L++A +V + RG Sbjct: 3 RMSKMTDYGIVLMTELARAEGDTRTTRELAARTRVPLPSASKVLKSLLQAALVVSHRGAN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA ++ + ++V A E + EC S C L C + R +A Sbjct: 63 GGYGLARPAHELPLAELVTALEGPVALTECGVHTSGGAPCELESVCQVRGHWRLINDAIQ 122 Query: 120 DVLTQYSIECLVRNRSSI-KKIFNAG 144 + L + ++ L+ + +++ G Sbjct: 123 EALGRLTLADLIAPAPRVPERLVGLG 148 >gi|189499477|ref|YP_001958947.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] gi|189494918|gb|ACE03466.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] Length = 167 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TDY IR L+ H QI++ I FL +ILQ L K G+ + G Sbjct: 3 MKVLTKNTDYAIRALLVLGTHEGEYVSARQISQQQGIPYQFLRRILQELNKNGLTTSREG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGVRL + D I + DV++ + ++EC +I C SC L + + Sbjct: 63 AHGGVRLEKNPDAIRVRDVIEIFQGKVELSECMFRKQI-CANRASCVLRHEIMRIEEIVS 121 Query: 120 DVLTQYSIECLVRNRSSIK 138 Q ++ L+ + + + Sbjct: 122 REFGQITLGKLLTDLTKLN 140 >gi|330992748|ref|ZP_08316692.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329760226|gb|EGG76726.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 151 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 1/145 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ RTDY RVL++ A + D I I+ IS L K++ L G+V RGR Sbjct: 5 MRLSLRTDYAFRVLIHLAANPDTRVTIRAISTLHRISHNHLMKVVHHLCLCGLVTGTRGR 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-LTSVLRKALNAFF 119 GG+ L P I + V++ E A L L + +A++AF Sbjct: 65 TGGIHLAMPPGHIMVGHVIRVMETQGEFMAGHAPSGDSRFLAADARPLRHLTARAMDAFM 124 Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144 VL SI+ LV + ++ + AG Sbjct: 125 AVLEDMSIQDLVGSPELVRSVCAAG 149 >gi|332708195|ref|ZP_08428185.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L] gi|332353021|gb|EGJ32571.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L] Length = 147 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA+ + +L K+L + +AG+V++VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLRPGYGPTSVRAIAKRQGLPAPYLEKLLIEMRRAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L QI++ +++A E+ H D ++ + Sbjct: 61 AQGGYQLAHEPTQISLGKILEAVGETIEP---LPHHTPDAGQAEDWVTFTLWHRLHQKLK 117 Query: 120 DVLTQYSIECL 130 + L ++ L Sbjct: 118 EALYTITLADL 128 >gi|320352697|ref|YP_004194036.1| BadM/Rrf2 family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121199|gb|ADW16745.1| transcriptional regulator, BadM/Rrf2 family [Desulfobulbus propionicus DSM 2032] Length = 159 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ +Y IR ++Y + +IA I FL KI Q L K G++E +G Sbjct: 1 MRLTRAAEYAIRCMIYLSRQGQGVLTSRQEIAAQADIPPNFLAKIAQDLAKTGLIEIRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG+ L R I++L+VV+ ++ +C A C C + V A + Sbjct: 61 ARGGLVLNRHPAAISLLEVVEIMIGEIYLNDCVARPAA-CKAQRYCAVHRVWLDARDQLR 119 Query: 120 DVLTQYSIECLVRNRSSI 137 D L + + + L + + + Sbjct: 120 DTLRRVNFDQLSADSTCL 137 >gi|225568454|ref|ZP_03777479.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM 15053] gi|225162682|gb|EEG75301.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM 15053] Length = 146 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ A + + ++ IA+ +S +L ++ L KAGIV +V+G Sbjct: 1 MKISTKGRYGLRALVDMAANSGEEAVSLTLIAKRQNLSLNYLEQVFGILRKAGIVASVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL + A IT+ ++++A E F +A D L V + Sbjct: 61 AGGGYRLAKDAAGITVKEILEALEGEFSIAGTAKGETEDAVGQAIRTL--VWDEIDRRVN 118 Query: 120 DVLTQYSIECLVRN 133 ++L + ++ L + Sbjct: 119 ELLKEKTLAGLAKE 132 >gi|294629007|ref|ZP_06707567.1| transcriptional regulator [Streptomyces sp. e14] gi|292832340|gb|EFF90689.1| transcriptional regulator [Streptomyces sp. e14] Length = 157 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TD +RVLM A+ + ++A + KI+ L G++ RG Sbjct: 9 MRLLRSTDMALRVLMRLAVAGETDTPTTREVAADMGVPYTHAAKIVAELQHRGLLTARRG 68 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L +I +V+ E VA+C CPL C L LR+A AF+ Sbjct: 69 RGGGLSLTEAGRGASIGAIVRTMEGEGDVADCTGGD-TPCPLNSDCRLRGALRRAQEAFY 127 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ +V + Sbjct: 128 AALDPLTVADMVAAPTG 144 >gi|313905574|ref|ZP_07838937.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469637|gb|EFR64976.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 131 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 1/130 (0%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + Y +RV++ A + D + IAE IS+ +L I + +V+ ++ G+ Sbjct: 2 FSTKGRYALRVMIDLAQQDSDDFVPLKDIAERQDISKKYLEIIAKEMVRGKLIVGASGKH 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R ++ ++ +V+ E +F C A + +CP C S+ ++ + Sbjct: 62 GGYRLVRRPEEYSVGEVIDLMEGTFAPVVCLACNAEECPRADKCKTLSMWKEFYEIEKEF 121 Query: 122 LTQYSIECLV 131 I L+ Sbjct: 122 FYNKKISDLL 131 >gi|325266631|ref|ZP_08133308.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella denitrificans ATCC 33394] gi|324982074|gb|EGC17709.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella denitrificans ATCC 33394] Length = 148 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMIDLALNAQNNAVKLNSISERQQISLSYLEQLFSKLRRAGLVESIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A +I I ++ A E+ C K +C C ++ + Sbjct: 61 PGGGYILGRDAGEINIAQIIAAAEDELDATLC--KGKANCQSGAPCLTHNLWENLNHTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 L+ ++ L+ + Sbjct: 119 AYLSSVTLAGLLAQQQP 135 >gi|197121302|ref|YP_002133253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Anaeromyxobacter sp. K] gi|196171151|gb|ACG72124.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. K] Length = 157 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 2/144 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY I +L A + +AE + + K+ + L KAG+V + RGR Sbjct: 3 RLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119 GG L RPAD I+I ++V+A E + C C L +C + A Sbjct: 63 GGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L + +V S+ K +A Sbjct: 123 GALRGLPLSSIVLQHSNDPKNADA 146 >gi|120404425|ref|YP_954254.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957243|gb|ABM14248.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium vanbaalenii PYR-1] Length = 148 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M + +D QIA + SE + K + LV+ G+VE R Sbjct: 1 MQLTRFTDLGLRAMMILSAGEFDDQRVTTRQIAASAGASENHIAKAVSRLVELGLVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V C CPL+ C L + A AF Sbjct: 61 GRVGGLSLTEAGRTASVGRLVRELEGDREVITC--DGDSPCPLLAGCRLRRAMAAAKEAF 118 Query: 119 FDVLTQYSIECLVRNRS 135 + L +Y++ L R + Sbjct: 119 YAELDRYTVTDLARGPA 135 >gi|124516103|gb|EAY57611.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] gi|206602891|gb|EDZ39371.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 156 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LTK+ DY + L + + + I +++EA I L K+LQ L K GI+++ Sbjct: 3 KLTKKVDYALLALSFLSQQEEGQVVNIREVSEAYQIPTEILAKVLQRLSKKGILQSHHAP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L +PA ++ILDV+ A + S + C H C + +C + S L + Sbjct: 63 KGGYSLKKPARNVSILDVINAIDGSVGILSCSDGHDKTCQQIDNCDIRSPLERIQGKIMW 122 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 +L S+E + + + + + Sbjct: 123 LLEDMSLEEFIHSEPTTGGVLHG 145 >gi|291295308|ref|YP_003506706.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470267|gb|ADD27686.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM 1279] Length = 173 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K Y ++L Y A D ++++A + +L +IL LV +V + +G Sbjct: 1 MRLSKTDIYAFKILGYLGAQAPDRLVGSEELSKATGVPHTYLARILAALVGHNLVLSKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117 + GG L RPA++I + DV++A + C + + C C S V K +A Sbjct: 61 QGGGYALPRPAEEINLRDVIRAVDGPIAPLACVSLNWPKACVEERRCHARSVVWLKVRDA 120 Query: 118 FFDVLTQYSIECLVRN 133 +L+Q S+ L + Sbjct: 121 ALQILSQVSVADLAAD 136 >gi|126433552|ref|YP_001069243.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS] gi|126233352|gb|ABN96752.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS] Length = 153 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M A + IA SE + K + L G+V R Sbjct: 1 MQLTRFTDLGLRTMMLLAAGEADGQRVTTRTIAAGANASEHHIAKAVARLADLGMVHARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V +C CPLV +C L L A AF Sbjct: 61 GRVGGLTLTDAGRDASVGWLVRRLEGDREVIQCGGED--PCPLVAACRLRKALSDAKEAF 118 Query: 119 FDVLTQYSIECLV 131 + L +Y+I L Sbjct: 119 YRELDRYTIADLA 131 >gi|257783930|ref|YP_003179147.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] gi|257472437|gb|ACV50556.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] Length = 198 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++++TDY IR+L + + AE I F I LV AG++ + RG Sbjct: 1 MEISRKTDYAIRMLSSLVRNPKKLLSVRDAAEENDIPYSFARSIQHDLVIAGVIVSTRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118 RGG+ L Q+++LD+V+A + F++ C + CP SC + A Sbjct: 61 RGGMMLAIDPTQVSVLDIVEAVQGPVFISNCEWAGPNNEPCPRHNSCYFGPLWCSAEKTL 120 Query: 119 FDVLTQYSIECLV 131 + ++ +V Sbjct: 121 RNFFASVTLHQVV 133 >gi|16126109|ref|NP_420673.1| RrF2 family protein [Caulobacter crescentus CB15] gi|221234879|ref|YP_002517315.1| Rrf2 family protein [Caulobacter crescentus NA1000] gi|13423309|gb|AAK23841.1| RrF2 family protein [Caulobacter crescentus CB15] gi|220964051|gb|ACL95407.1| Rrf2 family protein [Caulobacter crescentus NA1000] Length = 158 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ + Y + + A D +++IA IS +L ++ L + G+V + Sbjct: 1 MRLSTKGRYAVMAMTDLAKRQDESDGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVG-SCGLTSVLRK 113 RG GG RL + +D+ I D+V A +E C C G C ++ + Sbjct: 61 ARGPGGGYRLAKASDETFIADIVLAVDEPLRATRCNFTKGQAKGCMAGGERCMTHNLWEE 120 Query: 114 ALNAFFDVLTQYSIECLVRNR 134 L S+ ++ Sbjct: 121 MGRQIHGYLASVSVADVLAGE 141 >gi|87199748|ref|YP_497005.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135429|gb|ABD26171.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium aromaticivorans DSM 12444] Length = 144 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A R+ IAE I FL IL + + GIV + RGR Sbjct: 2 LSQKTRYTIRALQHLADTWGQGAVRLDAIAEKQNIPRKFLTVILSEMAREGIVISHRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L P I D+++ T S + C + H +C C L ++ + + Sbjct: 62 GGYELALPPVDIRYGDIIRLTRGSLALVPCASRNAHEHCNNCLPEVDCRLRGLMLQLRDE 121 Query: 118 FFDVLTQYSIEC 129 +L + ++ Sbjct: 122 TAAILDRITLAD 133 >gi|317403134|gb|EFV83661.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 159 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ ++ + + A + ND P S++A A + +L K LQ LV+AGI + G Sbjct: 1 MKMSEGVEWALHCCLTLAWVGNDGPVPTSRLAAAFELPSHYLNKFLQSLVRAGIFTSSAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDC-----PLVGSCGLTSVLR 112 +GG +L + + I++LDVV A E + C C CG+ + ++ Sbjct: 61 AKGGFQLAKAPEAISLLDVVMAIEGDEWAFRCTEIRQRGAGCLAKPNDFARPCGIAAAMQ 120 Query: 113 KALNAFFDVLTQYSIECLVR 132 +A A+ L +I L++ Sbjct: 121 RAETAWRKELAAQTIADLIK 140 >gi|251773253|gb|EES53803.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum ferrodiazotrophum] Length = 174 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 12/140 (8%) Query: 3 LTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L K +Y + L+ D P +S IAE +S +L KI L KAGIV G + Sbjct: 7 LGKGVEYALHSLLSLIKTPEDSPLGVSDIAEFQGVSPSYLSKIFTRLKKAGIVRFSIGVK 66 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC-----------FASHKIDCPLVGSCGLTSV 110 GG L +P DQIT DVV A E F + EC D G C + Sbjct: 67 GGYVLAKPPDQITFWDVVVAVEGEFSLFECRNIREKIAIYKEGCLNPDWQSRGPCTIHKA 126 Query: 111 LRKALNAFFDVLTQYSIECL 130 + + L + +I L Sbjct: 127 MMDVETQIRNSLKEKNIAWL 146 >gi|332668756|ref|YP_004451763.1| BadM/Rrf2 family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337793|gb|AEE44376.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas fimi ATCC 484] Length = 152 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DY +R A P +A I FL +IL L +AGIV +VRG Sbjct: 1 MRVSAKADYAVRACAELAASPHGDPVPSEVLAAGQDIPVSFLERILGDLRRAGIVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL RPA +T+ +V++A + + + L V Sbjct: 61 RSGGYRLARPAGDVTLAEVIRAVDGPLVTVRDERPPSLTYEGSAA-ALLDVWVALRTNVR 119 Query: 120 DVLTQYSIECLVR 132 VL ++ LV Sbjct: 120 QVLDVVTLAHLVA 132 >gi|227499166|ref|ZP_03929301.1| transcriptional regulator [Acidaminococcus sp. D21] gi|226904613|gb|EEH90531.1| transcriptional regulator [Acidaminococcus sp. D21] Length = 163 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 19/147 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ +Y + L+Y AI I ++A ISE +L KI L K G+V V G Sbjct: 1 MSISVGVEYALHCLIYLAIPTTSRSIGIKEMAAFQGISETYLSKIFMKLRKKGLVSAVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105 +GG RL R AD+IT DVV+A E + +C +CP C Sbjct: 61 VKGGYRLSREADEITFWDVVEAIEGPHYRFQCAEIRQHMAIVDPHELPPSFSECP----C 116 Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVR 132 ++ V++ A + + L +I L R Sbjct: 117 LISEVMKGAEDQYRTYLKGRTIGWLYR 143 >gi|110596721|ref|ZP_01385011.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] gi|110341408|gb|EAT59868.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] Length = 137 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y + D + ++A+ +S+ FL K +Q L +AGI +V+G Sbjct: 3 QVSRKFEYGLHAVTYLSTKGVDRVVTVKEMADDIGVSQEFLSKAMQSLKRAGIARSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L R +IT+ D+ A E + + C C + SC + N D Sbjct: 63 KGGYSLGRKPGEITVADIAIAIEGAPHLMRC-GKKLASCEISSSCHHRDYMNSLQNKIQD 121 Query: 121 VLTQYSIECLVRNRS 135 ++ +I L+R Sbjct: 122 LMASTTIASLLRKEP 136 >gi|18310768|ref|NP_562702.1| hypothetical protein CPE1786 [Clostridium perfringens str. 13] gi|18145449|dbj|BAB81492.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 128 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 I I++ ISE +L ++ L KA +++++RG +GG L R + IT+ D+++ E Sbjct: 1 MSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRGAQGGYILNRQPEDITVSDIIEVLEG 60 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 +++C + C V C + +K + +V +++ +V + ++K+ Sbjct: 61 PIEISDCLDG--VTCNNVDCCATRLLWKKIKTSIDEVTNSVTLKDIVEDYKAMKE 113 >gi|254410673|ref|ZP_05024452.1| rrf2 family protein (putative transcriptional regulator) [Microcoleus chthonoplastes PCC 7420] gi|196182879|gb|EDX77864.1| rrf2 family protein (putative transcriptional regulator) [Microcoleus chthonoplastes PCC 7420] Length = 147 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA+ + +L K+L + +A +V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPGYGPTSVKMIAQRQDLPAPYLEKLLIEMRRANLVNSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R +I++ ++ A E+ H+ D ++ + Sbjct: 61 SQGGYQLAREPSKISLGQILAAVGETIEP---LHHHQADATQAEDWVTLTLWHRLHEKLK 117 Query: 120 DVLTQYSIECL 130 D L ++ L Sbjct: 118 DALYSITLADL 128 >gi|229062524|ref|ZP_04199837.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] gi|228716807|gb|EEL68498.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] Length = 168 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y I +AE +SE FL K+ L KAGIV +V G Sbjct: 1 MQYSVGVEYALHCLVYLVTAPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108 +GG RL + + I+ DV++A E + +C + SC + Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDKTCNSCESSNSSCTIN 120 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 ++ +A + L + ++ L Sbjct: 121 LIMLEAEEHMREFLRKKTLAWL 142 >gi|170723498|ref|YP_001751186.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida W619] gi|169761501|gb|ACA74817.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida W619] Length = 150 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG GG +L R + Sbjct: 1 MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGMET 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A ES C DC +C + + L+ S+ LV Sbjct: 61 IQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIHEFLSGISLADLVM 118 Query: 133 NRS 135 R Sbjct: 119 RRE 121 >gi|189346037|ref|YP_001942566.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM 245] gi|189340184|gb|ACD89587.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola DSM 245] Length = 143 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y A + ++AE+ S+ FL K +Q + KAGI E+V+G Sbjct: 3 QVSRKFEYGLHAVAYLATKGSGRVVTVKEMAESIGFSQEFLSKAMQSMKKAGITESVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL R ITI D+ A E + C A C + C + + Sbjct: 63 KGGYRLARHPSVITIADIGIAIEGKPHLTRC-AVKLSSCEIAAHCDYRGYMNTLQDRIQS 121 Query: 121 VLTQYSIECLVRNRSS 136 ++ ++ +++ S Sbjct: 122 LMASTTVADILKQPDS 137 >gi|126658452|ref|ZP_01729600.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp. CCY0110] gi|126620194|gb|EAZ90915.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp. CCY0110] Length = 147 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ + P + IA+ + +L K+L + ++G+V ++RG Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIEMRRSGLVNSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R QI++ +++ A ++ + D V S+ ++ Sbjct: 61 SQGGYQLARQPSQISLGEILDAVGDTIEP---LPYYNPDIEQVEDWVTFSLWKRLHEKLK 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L + ++ L + S K Sbjct: 118 EALYKITLADLYYDARSWKASLGE 141 >gi|242242899|ref|ZP_04797344.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242233674|gb|EES35986.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319400953|gb|EFV89172.1| rrf2 family protein [Staphylococcus epidermidis FRI909] Length = 140 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L P+++IT D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL +++ L + + + + Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133 >gi|27468226|ref|NP_764863.1| hypothetical protein SE1308 [Staphylococcus epidermidis ATCC 12228] gi|57867116|ref|YP_188765.1| Rrf2 family protein [Staphylococcus epidermidis RP62A] gi|251811031|ref|ZP_04825504.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875949|ref|ZP_06284816.1| Rrf2 family protein [Staphylococcus epidermidis SK135] gi|293366417|ref|ZP_06613095.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315772|gb|AAO04907.1|AE016748_141 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637774|gb|AAW54562.1| Rrf2 family protein [Staphylococcus epidermidis RP62A] gi|251805449|gb|EES58106.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294974|gb|EFA87501.1| Rrf2 family protein [Staphylococcus epidermidis SK135] gi|291319451|gb|EFE59819.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329724645|gb|EGG61151.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU144] gi|329735208|gb|EGG71500.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU045] Length = 140 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L P+++IT D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL +++ L + + + + Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133 >gi|22297713|ref|NP_680960.1| hypothetical protein tll0169 [Thermosynechococcus elongatus BP-1] gi|22293890|dbj|BAC07722.1| tll0169 [Thermosynechococcus elongatus BP-1] Length = 148 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y I+ L+ ++ + P + IAE I +L K+L L +AG+V ++RG Sbjct: 1 MTLTTRGHYSIKALLDLSLLPNYGPASVRAIAERQKIPAPYLEKLLIELRRAGLVRSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L RP I++ D++ A ES F S+ ++ Sbjct: 61 VYGGYQLARPPATISLRDILTAVGES--PTPLFLHPPQPTDGTADWVTLSLWQRLHQKLQ 118 Query: 120 DVLTQYSIECL 130 + L S+E L Sbjct: 119 EALASISLEDL 129 >gi|172035368|ref|YP_001801869.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142] gi|171696822|gb|ACB49803.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142] Length = 153 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ + P + IA+ + +L K+L + ++G+V ++RG Sbjct: 7 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIKMRRSGLVNSLRG 66 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R QI++ ++ A ++ + D V S+ ++ Sbjct: 67 SQGGYQLARQPSQISLGQILDAVGDTIEP---LPYYNPDIEQVEDWVTFSLWKRLHEKLK 123 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L + ++ L + S K Sbjct: 124 EALYKITLADLYYDARSWKASLGE 147 >gi|302532532|ref|ZP_07284874.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. C] gi|302441427|gb|EFL13243.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sp. C] Length = 152 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R + A +D P + IA+A I FL IL + + G+V + RG Sbjct: 1 MRISARADYAVRAALQLAASQDDGPLKAEAIADAQEIPHKFLEGILNDMRRGGLVLSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA I+I DV++ + + L + Sbjct: 61 GNGGYRLARPARSISIADVIRVVDGPLVSVRGVRPPDLSYTGPAE-SLLPLWIALRANVR 119 Query: 120 DVLTQYSIECLV 131 ++L S+ + Sbjct: 120 EILDGVSLADVA 131 >gi|169829936|ref|YP_001700094.1| putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168994424|gb|ACA41964.1| Putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 138 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G Sbjct: 2 MKYSKATNYALHTMVFLTNMPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIESNPG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R+ + +I+ LDV+ A E + C + H+ G C + V+ A N Sbjct: 62 VNGGYRISKRPQEISFLDVIYAIEGQTTLFSCSSDHEDSFHNEG-CLIEQVMVDAENNMK 120 Query: 120 DVLTQYSIECLVRN 133 + L++ I + Sbjct: 121 EELSKKFIIDIAHE 134 >gi|117164556|emb|CAJ88102.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 152 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R + A +D P + IA+A I FL IL + + G+V + RG Sbjct: 1 MRISARADYAVRAALQLAASRDDGPLKAEAIADAQDIPHKFLEGILNDMRRGGLVLSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PA+ I+I DV++ E ++ L + + Sbjct: 61 GNGGYRLAKPAESISIADVIRTVEGPLVSVRGVRPPELSYTGPAE-SLLPLWIALRSNVR 119 Query: 120 DVLTQYSIECLVRNR 134 ++L S+ + + Sbjct: 120 EILEGVSLADVASAQ 134 >gi|111017203|ref|YP_700175.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110816733|gb|ABG92017.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 153 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ + + + + P +++AE +S+ +L K LQ L +AG+V GR Sbjct: 1 MKLSGGVEWALHCCVVLS-QAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R + IT+LDVV+A + + C A+ C +CG+ V+ Sbjct: 60 DGGYVLTRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQC--RSACGIAKVMA 117 Query: 113 KALNAFFDVLTQYSIECL 130 A A+ L+ +I L Sbjct: 118 GAEQAWRASLSSVTIADL 135 >gi|269127656|ref|YP_003301026.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312614|gb|ACY98988.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora curvata DSM 43183] Length = 146 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +R+ M A+ + Q+AEA + K++ L G++E RG Sbjct: 1 MRLTKFTDLALRISMRLAVADPAEVYTTKQVAEAVGAPYTHVAKVVSRLQHLGVLEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L +I +++ E VA C CPL +C L L +A AF+ Sbjct: 61 RGGGLVLTERGRDASIGWLMRELEGYGDVAGC--EDSPPCPLRAACRLRGALSRAQEAFY 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV S+ Sbjct: 119 AALDPVTVRELVEAPSA 135 >gi|309379665|emb|CBX21654.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 148 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ ++S Sbjct: 119 DYLGSVTLQSIIEQKNS 135 >gi|15643333|ref|NP_228377.1| hypothetical protein TM0567 [Thermotoga maritima MSB8] gi|170288170|ref|YP_001738408.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2] gi|281411786|ref|YP_003345865.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|4981083|gb|AAD35652.1|AE001731_9 conserved hypothetical protein [Thermotoga maritima MSB8] gi|170175673|gb|ACB08725.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2] gi|281372889|gb|ADA66451.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga naphthophila RKU-10] Length = 137 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVRGR 60 T R++Y +R+++ A +++I E + F KIL L KAG+V+T RG+ Sbjct: 2 FTMRSEYALRLMIVMAKEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +I + ++V + V CP C + ++ ++ N Sbjct: 62 SGGYMLSRPPKEIKVSEIVFLLDRKSKVF----FDMPGCPDELDCVIRALWKRVENEIEK 117 Query: 121 VLTQYSIECLVRNRSSIKK 139 +L+ ++E LVR + K Sbjct: 118 ILSGVTLEDLVREQEEKMK 136 >gi|330807635|ref|YP_004352097.1| transcription factor, Rrf2 family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375743|gb|AEA67093.1| putative Transcription factor, Rrf2 family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 150 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG GG +L R Sbjct: 1 MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRGPGGGYQLSRDMQG 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + V+ A ES +C DC +C + + L+ S+ LV Sbjct: 61 IQVAQVIDAVNESVDATKCQGLG--DCHGGDTCLTHHLWCDLSLQIHEFLSGISLADLVT 118 Query: 133 NRS 135 R Sbjct: 119 RRE 121 >gi|255037279|ref|YP_003087900.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] gi|254950035|gb|ACT94735.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] Length = 147 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+ Y ++ L A P IS IAE I + FL IL L G++++ +G+ Sbjct: 2 ISKKAKYALKALKVLAEQYGKGPVLISYIAEKEKIPKKFLEAILLDLRNNGVLQSQKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L P ++ V++ + A C F DC +C L +VL + +A Sbjct: 62 GGYLLRVPPGEVNFSKVLRIIDGPIAPALCVSMFFYGKCDDCKDEETCSLRTVLERWRDA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL + ++ L++ ++ Sbjct: 122 NLAVLDKTTLSDLLQAENA 140 >gi|256377869|ref|YP_003101529.1| BadM/Rrf2 family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922172|gb|ACU37683.1| transcriptional regulator, BadM/Rrf2 family [Actinosynnema mirum DSM 43827] Length = 141 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL+K TD +RVLM A D + +A + + + K++Q L K G+V T RGR Sbjct: 1 MHLSKATDIALRVLM-LAAAKDAQLTVDDLATSMNVPRNHVAKVVQRLQKEGLVTTARGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + A ++ VV+ E V +C + CPL +C L LR A AFF Sbjct: 60 NGGVSVPPGARGVSAGHVVRRFEGEDEVVDC---EQGPCPLHRACLLRGALRTAREAFFA 116 Query: 121 VLTQYSIECLVRNRSS 136 L + L+ + Sbjct: 117 SLDTVLLRDLIAPPTG 132 >gi|254796684|ref|YP_003081520.1| Rrf2/aminotransferase, class V family protein [Neorickettsia risticii str. Illinois] gi|254589924|gb|ACT69286.1| Rrf2/aminotransferase, class V family protein [Neorickettsia risticii str. Illinois] Length = 522 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT +T Y I + A+H+ + S+IA ISE FL IL PL K GI+E++ G Sbjct: 2 LTAKTRYAIVASIDIALHSKGRKYVKTSEIASRQKISEKFLEVILPPLKKQGILESLLGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFF 119 GG RL + D I ++ ++KA ++ + C + C C ++ F Sbjct: 62 GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 121 Query: 120 DVLTQYSIECLVRN 133 + +++ ++ + Sbjct: 122 NFFESVTLQDIISD 135 >gi|17232043|ref|NP_488591.1| hypothetical protein alr4551 [Nostoc sp. PCC 7120] gi|17133687|dbj|BAB76250.1| alr4551 [Nostoc sp. PCC 7120] Length = 145 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H + P +I QIA I + +L ++L L + GI+ + R Sbjct: 1 MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG L R +I+I ++++ E + + + + + + ++A A Sbjct: 61 GSRGGYFLAREPRKISIFEILECLEGLEVKT---SEENLKSQTLDASVIEEIWQEARQAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 VL +YS++ L R S +++ Sbjct: 118 NSVLKKYSLQDLCEKRDSRRQL 139 >gi|239932920|ref|ZP_04689873.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 152 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R + A D P + I++A I FL IL + + G+V + RG Sbjct: 1 MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PA+ ITI DV++ + ++ L + + Sbjct: 61 GNGGYRLAKPAESITIADVIRTVDGPLVSVRGVRPPELSYTGPAE-SLLPLWIALRSNVR 119 Query: 120 DVLTQYSIECLVRNR 134 ++L S+ + + Sbjct: 120 EILEGVSLADVASAQ 134 >gi|197106347|ref|YP_002131724.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196479767|gb|ACG79295.1| conserved predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 145 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R+ Y +R L++ A + P I++IAEA FL IL L + ++ + RGR Sbjct: 2 LSQRSRYALRALVHLAGRTDGRPAAIAEIAEAAATPRKFLEAILLELKRRQLLVSTRGRF 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG RL RPA +I+ DV++A + +A C + CP V C + L KA +A Sbjct: 62 GGYRLARPASEISFADVIRALDGPLALAPCASKTAYRPCETCPTVEDCPVHPALAKARDA 121 Query: 118 FFDVLTQYSIE 128 VL +++E Sbjct: 122 VAAVLETWTLE 132 >gi|21674519|ref|NP_662584.1| hypothetical protein CT1702 [Chlorobium tepidum TLS] gi|21647711|gb|AAM72926.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 152 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K TDY +R L+ + +D I++ I FL +ILQ L++ G+VE+ G Sbjct: 1 MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGV+L + I + DV++ + ++EC ++ C +C L + + Sbjct: 61 AGGGVKLAKEPGDIGVADVIEIFQGKVQLSECMFRKQL-CSNRANCVLRHEIMRIEKMVN 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + +Q +I L+ + +++ + Sbjct: 120 NEFSQVTIGKLIDDLKAVEAM 140 >gi|297245670|ref|ZP_06929535.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8796] gi|297177321|gb|EFH36573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus A8796] Length = 140 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PA++I+ D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESELP--------AQKQLWIRMRDAVR 112 Query: 120 DVLTQYSIECLVR 132 DVL +++ L Sbjct: 113 DVLDNTTLKYLAE 125 >gi|148269496|ref|YP_001243956.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735040|gb|ABQ46380.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila RKU-1] Length = 137 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 6/136 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVRGR 60 T R++Y +R+++ A +++I E + F KIL L KAG+V+T RG+ Sbjct: 2 FTMRSEYALRLMIVMAKEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +I + ++V + V CP C + ++ ++ N Sbjct: 62 SGGYMLARPPKEIKVSEIVFLLDRKSKVF----FDMPGCPDELDCVIRALWKRVENEIEK 117 Query: 121 VLTQYSIECLVRNRSS 136 +L+ ++E L++ + Sbjct: 118 ILSGVTLEDLIKEQEE 133 >gi|329737377|gb|EGG73631.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis VCU028] Length = 140 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L P++QIT D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPSEQITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 DVL +++ L + + + + Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133 >gi|227484972|ref|ZP_03915288.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237127|gb|EEI87142.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 133 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R YG+R + Y A + D +S+I+E +SE +L ++++ L K G++++ RG Sbjct: 1 MKLSTRGRYGLRAICYIAENQDKGFIPVSEISEKLNLSENYLEQLVRVLKKDGLIKSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG ++ ITI ++++ E +EC S K DC C + K Sbjct: 61 PKGGYKIKSDLSSITIGQILRSLEGDMTTSECV-SGKFDC--SEKCDAYDLFSKLDYLIN 117 Query: 120 DVLTQYSIECLVRNR 134 + ++E +V++ Sbjct: 118 AAIDSITLENIVKHE 132 >gi|261855791|ref|YP_003263074.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261836260|gb|ACX96027.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 168 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 1/141 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ +DY I +L A +++ ++ + K+++ L ++ + +GR Sbjct: 3 KISRMSDYAIVLLTAMAKLASEQQTARALSDQTGLTLPTVGKLVKMLAANELLCSQQGRH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPAD+I++ D++++ + + ECF DC CGL + + + Sbjct: 63 GGYRLARPADKISLADIIESIDGPIAMTECFTVEH-DCEREADCGLKPHWKAINDGVRQL 121 Query: 122 LTQYSIECLVRNRSSIKKIFN 142 L + ++ L+ + F+ Sbjct: 122 LDRTTLAELIEPIPQVPVWFD 142 >gi|325201913|gb|ADY97367.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M01-240149] gi|325208335|gb|ADZ03787.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis NZ-05/33] Length = 148 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ +++ Sbjct: 119 DYLGSVTLQSIIEQKNN 135 >gi|239977954|ref|ZP_04700478.1| transcriptional regulator [Streptomyces albus J1074] Length = 144 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG Sbjct: 1 MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPAD+IT+LDV +A + + + P G+ GL V R+ +A Sbjct: 61 EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 119 Query: 121 VLTQYSIECLVRNRS 135 +L ++ L+ + + Sbjct: 120 ILQGVTLTSLLADEA 134 >gi|291449865|ref|ZP_06589255.1| transcriptional regulator [Streptomyces albus J1074] gi|291352814|gb|EFE79716.1| transcriptional regulator [Streptomyces albus J1074] Length = 147 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG Sbjct: 4 MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPAD+IT+LDV +A + + + P G+ GL V R+ +A Sbjct: 64 EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 122 Query: 121 VLTQYSIECLVRNRS 135 +L ++ L+ + + Sbjct: 123 ILQGVTLTSLLADEA 137 >gi|271964996|ref|YP_003339192.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508171|gb|ACZ86449.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 142 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD +RV M A+ Q+AE I K++ L G+VE RG Sbjct: 1 MRLTKFTDLALRVTMRLAVAEQGTSLTTRQVAEVMAIPYTHTAKVIARLQHLGVVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L ++ +V+ E V C + CPL +C L LR A AF+ Sbjct: 61 RGGGLELTVAGRTASLGWLVRELEGEEEVVAC--EGETPCPLRAACRLRGALRGAQQAFY 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++ LV + + Sbjct: 119 ASLDPLTVNDLVASPTG 135 >gi|217970313|ref|YP_002355547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thauera sp. MZ1T] gi|217507640|gb|ACK54651.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T] Length = 171 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDYG +L + A H D + + +AEA + + K+L+ L + +V + RG Sbjct: 3 RISKLTDYGTLILTHMAGHPDRLHSAAGLAEALGLGLPTVSKVLKTLGRHELVSSQRGAH 62 Query: 62 GGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP D+IT+ DV+ A EE F + EC +S + C + C + + Sbjct: 63 GGYALARPPDRITVADVIDALEEQAFGLTECSSSSGV-CAIESDCRIRENWMRINTVVRQ 121 Query: 121 VLTQYSIECLVR 132 L +I +V Sbjct: 122 ALQAVNIADMVH 133 >gi|85707148|ref|ZP_01038235.1| rrf2 family protein [Roseovarius sp. 217] gi|85668307|gb|EAQ23181.1| rrf2 family protein [Roseovarius sp. 217] Length = 100 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 47/100 (47%), Positives = 63/100 (63%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TKRT+ IR+LM+CA +ND ++IAE C SE L +I+ L + G + T RGR Sbjct: 1 MRITKRTNIAIRLLMFCASNNDRLVTKAEIAERCNTSESHLAQIINRLSQLGFLYTQRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 GGVRL RP +IT+ DV + E++ VAECFA CP Sbjct: 61 TGGVRLGRPMTEITVGDVFRQLEQNTPVAECFADVDNTCP 100 >gi|67923935|ref|ZP_00517390.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501] gi|67854203|gb|EAM49507.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501] Length = 147 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ + P + IA+ + +L K+L + + G+V ++RG Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQELPAPYLEKLLIEMRRNGLVNSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L R +I++ ++ A E+ + D V S+ ++ Sbjct: 61 SRGGYQLARQPSEISLGQILDAVGETIEP---LPHYNPDLDQVEDWVTFSLWKRLHQKLK 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L + ++ L + S K Sbjct: 118 EALYKITLADLYYDARSWKASLGE 141 >gi|310819041|ref|YP_003951399.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309392113|gb|ADO69572.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca DW4/3-1] Length = 152 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 2/138 (1%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 TDYG+ +L A ++AE + + K+L+ L AG++ + RG GG L Sbjct: 2 TDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAMGGYGL 61 Query: 67 CRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 RPA I + V+ A E + C + C L C + R A + L + Sbjct: 62 ARPAAAIPLTQVISALEGPVAITACVQHTDGEPSCELESVCRIRGHWRVINQAIQEALGR 121 Query: 125 YSIECLVRNRSSIKKIFN 142 ++ L ++++ Sbjct: 122 LTLADLCAPELRVERLVG 139 >gi|166366256|ref|YP_001658529.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166088629|dbj|BAG03337.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 147 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V + RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L RPA++I++ +++A E+ + + ++ + Sbjct: 61 AQGGYQLARPANRISLGQILEAVGETIEP---LSGYHPRDEQAEDWVTFTIWKHLHEKLK 117 Query: 120 DVLTQYSIECL 130 + L + ++ L Sbjct: 118 EALGKITLADL 128 >gi|329906564|ref|ZP_08274419.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae bacterium IMCC9480] gi|327547254|gb|EGF32103.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae bacterium IMCC9480] Length = 148 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ +D G+RVL+Y A + +++IA I L K+ L + G V+ R Sbjct: 1 MRLTRYSDIGLRVLIYLARSGTRESQITVAEIAAQFDIPINHLIKVAGHLARTGWVDATR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+RL A + + ++ E + +C + C L C L L+ + AF Sbjct: 61 GRNGGLRLAIDATTLHVGTILLELEGKDELIDC---DGLACHLRKDCILRDALKVGMQAF 117 Query: 119 FDVLTQYSIECLVRNRSS 136 +D + Y++ L ++ Sbjct: 118 YDAMNGYTLADLCDGKTG 135 >gi|298491131|ref|YP_003721308.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708] gi|298233049|gb|ADI64185.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708] Length = 147 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA+ I +L K+L + +AG+V+++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPVSVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L QI+I +++A E+ ++ ++ Sbjct: 61 SIGGYQLAIKPAQISIGQILEAVGENITDLPLNNPRPAQ---AEDWVTFTLWQRLNQKLR 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L ++ L + S + Sbjct: 118 EALYSVTLADLYYDARSWQASLGE 141 >gi|159026192|emb|CAO88841.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 147 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V + RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L RPA++I++ +++A E+ + + ++ + Sbjct: 61 SQGGYQLARPANRISLGQILEAVGETIEP---LSGYHPKDEQAEDWVTFTIWKHLHEKLK 117 Query: 120 DVLTQYSIECL 130 + L + ++ L Sbjct: 118 EALGKITLADL 128 >gi|15677241|ref|NP_274394.1| hypothetical protein NMB1378 [Neisseria meningitidis MC58] gi|121635084|ref|YP_975329.1| DNA-binding protein [Neisseria meningitidis FAM18] gi|218768395|ref|YP_002342907.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis Z2491] gi|254805173|ref|YP_003083394.1| putative transcription factor [Neisseria meningitidis alpha14] gi|304387294|ref|ZP_07369487.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria meningitidis ATCC 13091] gi|313668524|ref|YP_004048808.1| transcriptional regulator [Neisseria lactamica ST-640] gi|60416285|sp|P0A0Y9|Y1593_NEIMA RecName: Full=Putative HTH-type transcriptional regulator NMA1593 gi|60416286|sp|P0A0Z0|Y1378_NEIMB RecName: Full=Putative HTH-type transcriptional regulator NMB1378 gi|7413461|gb|AAF62328.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|120866790|emb|CAM10543.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis FAM18] gi|121052403|emb|CAM08736.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis Z2491] gi|254668715|emb|CBA06505.1| putative transcription factor [Neisseria meningitidis alpha14] gi|254669828|emb|CBA04202.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|261392349|emb|CAX49885.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor IscR [Neisseria meningitidis 8013] gi|304338677|gb|EFM04794.1| iron-sulfur cluster assembly transcription regulator IscR [Neisseria meningitidis ATCC 13091] gi|308389496|gb|ADO31816.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis alpha710] gi|313005986|emb|CBN87445.1| putative transcriptional regulator [Neisseria lactamica 020-06] gi|316984196|gb|EFV63174.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis H44/76] gi|319410641|emb|CBY91011.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor IscR [Neisseria meningitidis WUE 2594] gi|325128433|gb|EGC51314.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis N1568] gi|325132429|gb|EGC55122.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M6190] gi|325134386|gb|EGC57031.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M13399] gi|325136465|gb|EGC59071.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M0579] gi|325138418|gb|EGC60986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis ES14902] gi|325140404|gb|EGC62925.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis CU385] gi|325144688|gb|EGC66986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M01-240013] gi|325198522|gb|ADY93978.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis G2136] gi|325200003|gb|ADY95458.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis H44/76] gi|325204371|gb|ADY99824.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M01-240355] gi|325205856|gb|ADZ01309.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria meningitidis M04-240196] Length = 148 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSS 136 D L +++ ++ +++ Sbjct: 119 DYLGSVTLQSIIEQKNN 135 >gi|87198220|ref|YP_495477.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133901|gb|ABD24643.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium aromaticivorans DSM 12444] Length = 146 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + + A H Q+A+ + + K++ L AG++++VRG Sbjct: 1 MRLSSMADYAVVTMCAAARHCGQQRVSAQQLADETGLPAPTVQKLVSKLSSAGLLKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG++L RPA IT+ D+V+A E +A C + DC L +C + A Sbjct: 61 ARGGLKLARPAAAITLADIVEAVEGPIALAPCSEHGRHDCTLESACTVRPHWPAVDAALR 120 Query: 120 DVLTQYSIECLVR 132 L + L R Sbjct: 121 GALAGIPLTQLSR 133 >gi|218682838|ref|ZP_03530439.1| Rrf2 family transcriptional regulator [Rhizobium etli CIAT 894] Length = 148 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++ Y +R L A + P IS IA I + FL +IL L GIV + RG++ Sbjct: 2 ITQKAKYALRALTALADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA IT ++++ + C + DC +C + V K +A Sbjct: 62 GGYLLLKPAHTITFGEILRIVDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +I + S Sbjct: 122 TRKVLFSTTIADAAQPAHS 140 >gi|220916006|ref|YP_002491310.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953860|gb|ACL64244.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-1] Length = 157 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY I +L A + +AE + + K+ + L KAG+V + RGR Sbjct: 3 RLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119 GG L RPAD I+I ++V+A E + C C L +C + A Sbjct: 63 GGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122 Query: 120 DVLTQYSIECLV 131 L + +V Sbjct: 123 GALRGLPLSSIV 134 >gi|75908723|ref|YP_323019.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702448|gb|ABA22124.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis ATCC 29413] Length = 145 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y I L+ A H + P +I QIA I + +L ++L L + GI+ + R Sbjct: 1 MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG L R +I+I ++++ E + + + + + ++A A Sbjct: 61 GSRGGYFLAREPRKISIFEILECLEGLEVKT---SEENLKSQTLDGSVIEEIWQEARQAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 VL +YS++ L R S +++ Sbjct: 118 NSVLKKYSLQDLCEKRDSRRQL 139 >gi|291441270|ref|ZP_06580660.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291344165|gb|EFE71121.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 154 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R + A D P + I++A I FL IL + + G+V + RG Sbjct: 3 MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL +PA+ ITI DV++ + ++ L + + Sbjct: 63 GNGGYRLAKPAESITIADVIRTVDGPLVSVRGVRPPELSYTGPAE-SLLPLWIALRSNVR 121 Query: 120 DVLTQYSIECLVRNR 134 ++L S+ + + Sbjct: 122 EILEGVSLADVASAQ 136 >gi|298492262|ref|YP_003722439.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708] gi|298234180|gb|ADI65316.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708] Length = 145 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ ++ Y I L+ A H + P +I QIA I + +L ++L L + GIV++ R Sbjct: 1 MELSCKSQYAILALLEMATHYESGEPMQIRQIAAQQDIPDRYLEQLLATLRRGGIVKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R +I++ ++++ E + + V S + + ++A A Sbjct: 61 GSKGGYLLAREPWKISVFEILECLEG-LDIKP--GEDDTNSKSVDSSIVDEIWQEARQAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 VL ++S++ L + R S +++ Sbjct: 118 NAVLQKHSLQALCQERDSRRQL 139 >gi|167758029|ref|ZP_02430156.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704] gi|167663926|gb|EDS08056.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704] Length = 140 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + ++ A+H + I IA +S + ++++ L + G+V ++R Sbjct: 1 MKISTKGIYALEIITDLAMHTGDGALESIGSIARRRGLSVKYSERLIKELKEQGLVVSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R A +IT+ +V++A E EC +C + + Sbjct: 61 GAHGGYCLGRDAGEITVREVLQAEEGELAPVECLTKETDCGIDCNTCATREIWSQIWQII 120 Query: 119 FDVLTQYSIECLVRNRSSIK 138 D + +I ++ +++ Sbjct: 121 LDTAQEVTIGDIIEKSKNLR 140 >gi|163796150|ref|ZP_02190112.1| rrf2 family protein [alpha proteobacterium BAL199] gi|159178609|gb|EDP63149.1| rrf2 family protein [alpha proteobacterium BAL199] Length = 167 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L + TDY I VL A + +A+A + + K+L+ + ++ RG + Sbjct: 14 RLNRMTDYAIVVLGQMAHEAGRVRTAAALADATGVPVPTVSKLLKQMAAVSLISAHRGAK 73 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RPA +T+ ++++A E + C + C + SC + + A Sbjct: 74 GGYALDRPAAAVTVTEIIQALEGPIALTACVDGAEECCEVEHSCPMRGNWNRVNRAIRAA 133 Query: 122 LTQYSIECLVRNR 134 L ++ +V Sbjct: 134 LDGVTLADMVDPE 146 >gi|294677664|ref|YP_003578279.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|6136499|sp|O68025|Y166_RHOCA RecName: Full=Putative HTH-type transcriptional regulator rrf2-like gi|3128259|gb|AAC16111.1| hypothetical protein [Rhodobacter capsulatus SB 1003] gi|294476484|gb|ADE85872.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus SB 1003] Length = 150 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +T++ Y ++ L+ A D P I +IA + FL IL L KAG+V ++R Sbjct: 2 ITQKMKYALKALLELADEARRDSPQALTIEEIATRSGTPKRFLEHILLDLRKAGVVASIR 61 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKA 114 GR GG L + ++I ++V+ + C + DC +C + V + Sbjct: 62 GRSGGYSLLKAPRDVSISELVRRIDGPIAPLPCLSRSAYQPCDDCHDEAACRIRKVFAEV 121 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142 ++ ++ ++E ++ + K+ Sbjct: 122 FWSYLVLIDSLTLEDMLAAGNPAAKLLE 149 >gi|301167345|emb|CBW26927.1| putative DNA-binding protein [Bacteriovorax marinus SJ] Length = 179 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y +R ++ H N P R+ +I++ IS +L ++ + L V++VRG Sbjct: 1 MRLTSKGRYAVRAMLDLTTHSNGNPVRLQEISQRQNISLHYLEQLFRKLRNGQAVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R DQIT+ D+++ E+ A + + V + + Sbjct: 61 PGGGYVLARSMDQITVKDILECVGENINPAKDILGTEAEQASTVEFHLSKNYFQNLGVIM 120 Query: 119 FDVLTQYSIECLVRN 133 D L+ S+ L+R Sbjct: 121 RDYLSTTSLGDLMRK 135 >gi|50428399|dbj|BAD30045.1| hypothetical protein [Rhodococcus opacus] Length = 159 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ + + + + P +++AE +S+ +L K LQ L +AG+V GR Sbjct: 7 MKLSGGVEWALHCCVVLS-QAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGR 65 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R + IT+LDVV+A + + C A+ C +CG+ V+ Sbjct: 66 DGGYVLTRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQC--RSACGIAKVMA 123 Query: 113 KALNAFFDVLTQYSIECL 130 A A+ L+ +I L Sbjct: 124 GAEQAWRASLSGVTIADL 141 >gi|193212159|ref|YP_001998112.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum NCIB 8327] gi|193085636|gb|ACF10912.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum NCIB 8327] Length = 142 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 2/141 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K TDY +R L+ + +D I++ I FL +ILQ L++ G+VE+ G Sbjct: 1 MKVLNKETDYAVRALISLGMKSDGWVSARAISDEQAIPYQFLRRILQELIRNGLVESKEG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGV+L + +I + DV++ + ++EC ++ C +C L + + Sbjct: 61 AGGGVKLAKEPGEIGVADVIEIFQGKVQLSECMFRKQL-CSNRANCVLRHEIMRIEKMVN 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + ++ +I L+ + +++ + Sbjct: 120 NEFSKVTIGKLIDDLKAVEAM 140 >gi|153011488|ref|YP_001372702.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563376|gb|ABS16873.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi ATCC 49188] Length = 143 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALNAF 118 GG L RPA +I I ++++A + + C + D C + ++ A Sbjct: 62 GGFCLARPAHEIAIGNIIRALDGALAPIACASKTDYRPCDDCDEDECEVRHMMLDVREAI 121 Query: 119 FDVLTQYSIEC 129 VL ++ Sbjct: 122 ASVLDHRTLAD 132 >gi|269216599|ref|ZP_06160453.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] gi|269130128|gb|EEZ61210.1| iron-sulfur cluster assembly transcription factor IscR [Slackia exigua ATCC 700122] Length = 160 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M +T + Y +R++ A H P + +A+ IS +L ++ +PLVK+G++++V Sbjct: 1 MLVTTKGRYAMRLMADVAHHFEKEGTPLSLRAVAQREGISMKYLEQLARPLVKSGLLKSV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG+ GG L P+ I D+++A E + DC + C Sbjct: 61 RGKGGGYVLAEPSAAIRAGDILRAAEGNVLPVSSCDGVTFDCARIADCASVKFWIGLDRV 120 Query: 118 FFDVLTQYSIECLVRN 133 D + ++ ++ Sbjct: 121 IEDYVDGVMLKDIIDE 136 >gi|162148831|ref|YP_001603292.1| Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209545421|ref|YP_002277650.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787408|emb|CAP57003.1| putative transcriptional regulator, rrf2 family [Gluconacetobacter diazotrophicus PAl 5] gi|209533098|gb|ACI53035.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 161 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY + L+ A D +++A I E + K+L+ L +V ++RG R Sbjct: 3 KLSKLTDYAVVALVRLA-QEDEVMTSPALSQATGIPEPTVAKVLKILAVHDLVVSLRGAR 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RP + I++ V+ A + + C C CG+ +A Sbjct: 62 GGYRLARPLNDISVARVITAVDGPISLTACVDGGG--CDTRPFCGVCGQWDAVNDAIRGA 119 Query: 122 LTQYSIECL 130 L+ ++ + Sbjct: 120 LSAITLADM 128 >gi|329934917|ref|ZP_08284958.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces griseoaurantiacus M045] gi|329305739|gb|EGG49595.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces griseoaurantiacus M045] Length = 156 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +RVLM A+ D ++A + K++ L G++ RGR Sbjct: 1 MRLLRSTDLALRVLMRLAVAGDSSPTTREVAADMDVPYTHAAKVVAELQHRGLLAARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATE---ESFFVAECFAS--HKIDCPLVGSCGLTSVLRKAL 115 GG+ + ++ VV+A E V +C CPL C L LR+A Sbjct: 61 GGGLSVTEAGRTASVGRVVRAFEGADGGSDVVDCEGGGTGTPPCPLRSDCLLRGALRRAQ 120 Query: 116 NAFFDVLTQYSIECLV 131 AF+ L +++ ++ Sbjct: 121 EAFYASLDPLTVQDMI 136 >gi|302562103|ref|ZP_07314445.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] gi|302479721|gb|EFL42814.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000] Length = 151 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L K G+V + RG Sbjct: 8 MHISAKADYATRALLELAREPARPLTCEAIASSQQIPFRFLKSVVGELRKGGLVRSQRGC 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++IT+LD+ +A + + +D P + GL V R+ Sbjct: 68 EGGYWLGRPAEEITLLDISRAVDGELLTLRGESPATLDYPGAAA-GLPDVWRRIEADAAA 126 Query: 121 VLTQYSIECLV 131 VL ++ L+ Sbjct: 127 VLGGVTVASLL 137 >gi|312897950|ref|ZP_07757363.1| Rrf2 family protein [Megasphaera micronuciformis F0359] gi|310620984|gb|EFQ04531.1| Rrf2 family protein [Megasphaera micronuciformis F0359] Length = 173 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R+++Y A + + +AE I E FL KI++ L A I+++ RG Sbjct: 32 MRLNQATDYAFRMVLYLATCPEGTKITGAALAEKQNIPERFLLKIMRSLTAADIMKSYRG 91 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117 GG L R IT+ DV+ A E + C A C G C L + + N Sbjct: 92 VEGGFALQRDPKDITLYDVIDAVEGQTQLQRCLADTDA-CTRGCGGMCSLYNAFEEIQND 150 Query: 118 FFDVLTQYSIECLVRNRSSI 137 L + L ++ Sbjct: 151 LAAKLKSVNFADLAAKEMAM 170 >gi|167646548|ref|YP_001684211.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167348978|gb|ABZ71713.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 159 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 13/147 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M L+ + Y + + A D +++IA IS +L ++ L + G+V Sbjct: 1 MRLSTKGRYAVMAMTDLARRQDEAEGGRAVALAEIAARQQISLSYLEQLFARLRRKGLVV 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-------KIDCPLVGS-CGL 107 + RG GG RL Q I D+V A +E C S C G+ C Sbjct: 61 SARGPGGGYRLALDPAQTRISDIVLAVDEPLRATRCGLSKAGVGKGAPKGCMAGGAQCLT 120 Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNR 134 + + L S+ ++ + Sbjct: 121 HDLWEEMGRQIHGYLASVSVADVLNGK 147 >gi|284039030|ref|YP_003388960.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM 74] gi|283818323|gb|ADB40161.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM 74] Length = 142 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+ Y I+ L + P I+ IA+ I FL IL + GI+++ +G+ Sbjct: 2 ISKKAKYAIKALKALTESYGSGPILITDIAKRENIPHKFLEGILLEMRNHGILQSQKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117 GG L ++I + V++ + C + + DC +C + ++ + +A Sbjct: 62 GGYLLRVDPERINLAQVIRIIDGPIAPTPCVSLNFYVRCDDCADEETCSIRPIMLRVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 V + +I+ LV Sbjct: 122 NLAVYEKTTIQMLVDKNKQ 140 >gi|330469219|ref|YP_004406962.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812190|gb|AEB46362.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 153 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ R DY +R + A P QIA A I FL IL L + GI++ Sbjct: 1 MRLSARVDYALRAVTELASVTGAGRGRPVTADQIARAQDIPPKFLESILLQLRRGGIMQA 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG GG L RPA++I++ DV++ + ++ L V Sbjct: 61 QRGPEGGYWLARPAEEISLADVIRVIDGPLAHIRGQRPEQLGYQGAAR-ALQDVWIALRA 119 Query: 117 AFFDVLTQYSIECLVR 132 +L ++ + + Sbjct: 120 NERQILELVTVADVAQ 135 >gi|237745942|ref|ZP_04576422.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229377293|gb|EEO27384.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 156 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ T Y IR++ + N P I+ ++E IS+ + + L + I E + G Sbjct: 1 MKLSTHTRYAIRIIFELHLAN-SPVSIAALSEQTNISQKVVENVHAILKQNRITEAIIGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RLC+P +I++ D++ +E CF + DCP C SV + Sbjct: 60 RGGIRLCKPLSEISLGDMIDLFDEGVRFVVCFGNKSNDCPRQRVCETRSVWKTISGKIRQ 119 Query: 121 VLTQYSIECLVRN 133 L + S+E ++ Sbjct: 120 ELGKVSLESILDQ 132 >gi|222106516|ref|YP_002547307.1| hypothetical protein Avi_5475 [Agrobacterium vitis S4] gi|221737695|gb|ACM38591.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 155 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 5/138 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + IS+IA I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLAQLGPGETAFISEIALRNNIPKKFLDTILLELRNGGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L PA +I I ++ + C + DC +C + + + +A Sbjct: 62 GGYSLSHPASEIRIGHAIRLLDGPLAPIRCASRTAFEACDDCADPVNCQVRRSMTQVRDA 121 Query: 118 FFDVLTQYSIECLVRNRS 135 +L ++E V S Sbjct: 122 IAAILDNMTLEQFVATPS 139 >gi|330446685|ref|ZP_08310337.1| iscR transcriptional regulator IscR transcriptional dual regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490876|dbj|GAA04834.1| iscR transcriptional regulator IscR transcriptional dual regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 145 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + I+E IS +L ++ L KAG+V +VRG GG RL A I + V+ A +ES Sbjct: 2 ADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASDIAVGMVIAAVDESVD 61 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 +C K DC C ++ + L ++ L+++ Sbjct: 62 ATKCHG--KGDCQGGARCLTHTLWHDLSDRISGFLNNITLGELMKDND 107 >gi|317051126|ref|YP_004112242.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] gi|316946210|gb|ADU65686.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] Length = 136 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ + YG+ ++Y A H D +I IA+ I + +L ++L L K G VE+ RG G Sbjct: 4 VSSKGAYGLAAMLYLAQHADKLIQIRDIAKNGGIPQNYLEQLLVQLKKNGFVESTRGAGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RL ITI +++A E C + +D L +V Sbjct: 64 GYRLAMEPKDITIYQILEALEGEL----CANRYDVDNK-----ALEFFWDDIRRKIQEVF 114 Query: 123 TQYSIECLVR 132 Q ++ LV Sbjct: 115 GQ-TLADLVD 123 >gi|84498351|ref|ZP_00997148.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649] gi|84381851|gb|EAP97734.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649] Length = 155 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYC--AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ RTDY +R ++ A + P + +A+ + FL +I+ L AG+V + Sbjct: 1 MDISARTDYAVRAMLILGEAQQAESGPVSVETLAQRQSLPRKFLEEIVADLRTAGLVTST 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG RGG L RPA + + DV +A + H+ V L V A Sbjct: 61 RGARGGYSLARPATETVLGDVFRAVDGPLAEVRGLRPHETAYEGVAL-HLPQVWVAVRAA 119 Query: 118 FFDVLTQYSIECLVRNR 134 VL S+ ++ Sbjct: 120 LRAVLDTTSLADVLSGE 136 >gi|114764573|ref|ZP_01443777.1| iron-sulfur cluster assembly transcription factor IscR, putative [Pelagibaca bermudensis HTCC2601] gi|114542949|gb|EAU45969.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. HTCC2601] Length = 153 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + I++ +S +L ++ L +AG+VE+VRG Sbjct: 1 MKLSTKGRYAMVALTDIAMQPDGVLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I ++D++ A +E+ A + L + L ++L+A Sbjct: 61 PGGGYRLARPASEIRVVDILGAVDETVDAMHKGAGASGATSGSRAQSLNNRLWQSLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V N Sbjct: 121 YVFLHQTRLSDVVGN 135 >gi|186683177|ref|YP_001866373.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465629|gb|ACC81430.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 146 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA+ I +L K+L + +A IV+++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPVSVRAIAKRQDIPAPYLEKLLIEMRRASIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAF 118 GG +L R QI+I +++A E+ + H P +T S+ ++ Sbjct: 61 SIGGYQLAREPAQISIGQILEAVGETSHL-----PHHTPAPTQAEDWVTFSLWQRLNQKL 115 Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143 + L ++ L + S + Sbjct: 116 KEALYSITLADLYYDARSWQASLGE 140 >gi|302339438|ref|YP_003804644.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta smaragdinae DSM 11293] gi|301636623|gb|ADK82050.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta smaragdinae DSM 11293] Length = 145 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + RT YG+R L+Y D ++ +I+EA +S+ +L +I++ L +GI+++ RG Sbjct: 1 MKFSTRTRYGLRFLIYLGSEGGDRYVQLGEISEAEKVSQKYLEQIVRLLKPSGILDSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG ++ D++ + + + E C + C C + + + Sbjct: 61 VTGGYKIAVDPDKVRLDRLFELLEGDLAPINCLREDE-HCERASRCPTLPLWMELDDLVK 119 Query: 120 DVLTQYSIECLVRN 133 + L + S+ L+RN Sbjct: 120 NFLKERSLGDLIRN 133 >gi|121535527|ref|ZP_01667335.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] gi|121305855|gb|EAX46789.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus carboxydivorans Nor1] Length = 146 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A + + +AE I + FL KI++ L +AG++++ RG Sbjct: 1 MQLNQATDYAFRIVLHLACLPSGQVVNGQTLAEQENIPQRFLLKIMRSLTQAGLIKSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117 GG L R ++ITI D++ A E + C A C C + +VL + Sbjct: 61 TDGGFALARRPEEITIWDIICAIEGEVTIHRCLADRTA-CSKHCTHECPVHAVLGQIQAE 119 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 L Q L R + +++ Sbjct: 120 LVAALRQADFATLASQRRTQEEM 142 >gi|229815527|ref|ZP_04445856.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM 13280] gi|229808918|gb|EEP44691.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM 13280] Length = 163 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 23/154 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----------------------RISQIAEACCISE 38 M ++ + Y +++++Y A P + ++AE IS Sbjct: 1 MLISSKGRYALKLMIYIAAIGGDPVGESISADAVSREALAPRPQTKVSLREVAEREGISL 60 Query: 39 LFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 +L ++++PL+ AG++ +VRG+ GG L +PA ++ D+++A E C Sbjct: 61 KYLEQLVRPLMNAGLLRSVRGKGGGYVLAKPAAEVRAGDILRAAEGERSTVACEGLDGA- 119 Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 C C + ++ L Sbjct: 120 CGRSDLCSTVKFWTGLEETIDAYVDGVTLAELAH 153 >gi|108797889|ref|YP_638086.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS] gi|119866984|ref|YP_936936.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS] gi|108768308|gb|ABG07030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS] gi|119693073|gb|ABL90146.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS] Length = 153 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R +M A + IA SE + K + L + G+V R Sbjct: 1 MQLTRFTDLGLRTMMLLAAGEVDGQRVTTRTIAAGANASEHHIAKAVARLAELGMVHARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V EC CPL+ +C L + A AF Sbjct: 61 GRVGGLTLTDAGRDASVGWLVRRLEGDREVIECGGED--PCPLLAACRLRKAMSDAKEAF 118 Query: 119 FDVLTQYSIECLVR 132 + L +Y+I L Sbjct: 119 YRELDRYTITDLAA 132 >gi|41408581|ref|NP_961417.1| hypothetical protein MAP2483c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396939|gb|AAS04800.1| hypothetical protein MAP_2483c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 161 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RP I+I DV++ + + + LT V R + Sbjct: 61 REGGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL + ++ + Sbjct: 120 SVLEETTLADVA 131 >gi|307151468|ref|YP_003886852.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981696|gb|ADN13577.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7822] Length = 143 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + +Y + L+ A D P +++I I E +L +I L + G++++ R Sbjct: 1 MSLPSKVEYALLALLEMASQPDLKKPLTVNEITAKQPIPERYLEQIFASLRRGGLLKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R IT+L++V E + + E ++ L + ++A A Sbjct: 61 GSKGGYVLAREPQDITLLEIVSIIEGNRQIKENMDVSTVEMKL-----IQESWQQANQAA 115 Query: 119 FDVLTQYSIECLVRNRSS 136 +L QY++ L + R S Sbjct: 116 QSILGQYTLLDLCKQRES 133 >gi|114569861|ref|YP_756541.1| BadM/Rrf2 family transcriptional regulator [Maricaulis maris MCS10] gi|114340323|gb|ABI65603.1| transcriptional regulator, BadM/Rrf2 family [Maricaulis maris MCS10] Length = 158 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A + P +S IA IS +L ++ L +A IV +VRG Sbjct: 1 MKLSTKGRYAVMAMADLADAAEAGPVTLSDIASRQSISLSYLEQLFAKLRRADIVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 GG RL R A +I I D++ A +E C S C C + + Sbjct: 61 PGGGYRLSRTASEIRISDIILAVDEPLRATRC--SEAKGCLSDGRRCITHDLWDELGRHI 118 Query: 119 FDVLTQYSIECLVRNR 134 + L+ ++E ++ R Sbjct: 119 YLYLSSVTLEDVLERR 134 >gi|159044182|ref|YP_001532976.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911942|gb|ABV93375.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 162 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A D +S+IAE IS +L ++ L +A +VE+VRG Sbjct: 1 MKLSTKGRYAMVAMADLAEAPADKLVTLSEIAERQSISLTYLEQLFVKLRRAKLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R D I + DV++A +E+ A + +T+ L + L+A Sbjct: 61 PGGGYRLARAPDAIRVSDVLQAVDETVSAMHTGAGASGAKSGSRAQSMTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + +V N+ Sbjct: 121 YVFLHQTRLSDVVTNQ 136 >gi|56963070|ref|YP_174797.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909309|dbj|BAD63836.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 139 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + + + ++ + + Q+A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMAFLTLNEKNEAIGVEQLAKMQNLSPTYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL + + + LDV++A E + C H P C + V+ A Sbjct: 61 VKGGYRLLKRQKETSFLDVIQAIEGQTSLFHCSLDHNEL-PHNHGCLIEQVMMNAEAKMK 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 L I + R + Sbjct: 120 ADLDATYIADIARQMKEKR 138 >gi|149185219|ref|ZP_01863536.1| predicted transcriptional regulator [Erythrobacter sp. SD-21] gi|148831330|gb|EDL49764.1| predicted transcriptional regulator [Erythrobacter sp. SD-21] Length = 136 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + + A H S++A + + K++ L AG++ +VRG Sbjct: 1 MRLSNLADYAVVTMSQAARHCGGGRVSASELAAETGLPAPTVQKLVSKLTAAGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG++L RPA IT+ D+V+A E + C DC + C + Sbjct: 61 AGGGLQLARPAAAITLADIVEAVEGPIALTACI--EGSDCSVDHDCRVRPHWPLVNETLR 118 Query: 120 DVLTQYSIECLVRNRS 135 L S+ L + + Sbjct: 119 SALAGISLVQLAQEKE 134 >gi|282864294|ref|ZP_06273350.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE] gi|282560781|gb|EFB66327.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE] Length = 143 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG Sbjct: 1 MHISAKADYATRALLELACEPGRPLTCEAIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA+ IT+LDVV+A + +D P + L V R+ Sbjct: 61 EGGYWLGRPAEDITLLDVVRAVDGEVLTLRGEPLADLDYP-GPAHPLPGVWREVEARAAA 119 Query: 121 VLTQYSIECLVRNRSS 136 +L S+ L+ + ++ Sbjct: 120 LLGGQSLTALLASGAA 135 >gi|88608399|ref|YP_506194.1| rrf2/aminotransferase, class V family protein [Neorickettsia sennetsu str. Miyayama] gi|88600568|gb|ABD46036.1| rrf2/aminotransferase, class V family protein [Neorickettsia sennetsu str. Miyayama] Length = 530 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT +T Y I + A+H+ + S+IA ISE FL IL PL K GI+E++ G Sbjct: 10 LTAKTRYAIAASIDIALHSKGRKYVKTSEIASRQKISEKFLELILPPLKKQGILESLLGP 69 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFF 119 GG RL + D I ++ ++KA ++ + C + C C ++ F Sbjct: 70 GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 129 Query: 120 DVLTQYSIECLVRN 133 + +++ ++ + Sbjct: 130 NFFESVTLQDIISD 143 >gi|134101075|ref|YP_001106736.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004105|ref|ZP_06562078.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913698|emb|CAM03811.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora erythraea NRRL 2338] Length = 171 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ ++G+ A D +AE + E +L K L L +AG++ G Sbjct: 1 MKLSQGVEWGLHCTALIAQAPEDTALSRRSLAEHHGLPEAYLAKHLNALTRAGLLTATPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 RGG RL RPA++IT+LDV+ A E C A C CG+ +V+ Sbjct: 61 PRGGFRLARPAERITVLDVLDAVEGDAAPFVCQEIRQRGTGAVPPEKC--TSPCGIAAVM 118 Query: 112 RKALNAFFDVLTQYSIECLV 131 +A A+ D L + +I LV Sbjct: 119 AQAHEAWRDTLRRTTIADLV 138 >gi|209963829|ref|YP_002296744.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209957295|gb|ACI97931.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 162 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY + VL A + + + +AE + + K+L+ L + GI+ + RG Sbjct: 3 RLSKLTDYAVVVLTAMARSDAPVHTAASLAERTGLPVPTVQKLLKQLARGGILASQRGAA 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R +T+ ++++A + + +C + C + C K A Sbjct: 63 GGYALLREDTDVTVAEIIEAIDGPIALTDCVDGAEGACGVQSLCPRRGSWDKVNEAVRRA 122 Query: 122 LTQYSIECLV 131 L S+ + Sbjct: 123 LDGVSLADMA 132 >gi|194364780|ref|YP_002027390.1| transcriptional regulator TrmB [Stenotrophomonas maltophilia R551-3] gi|194347584|gb|ACF50707.1| transcriptional regulator, TrmB [Stenotrophomonas maltophilia R551-3] Length = 151 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG R Sbjct: 3 RVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGVR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R A +I++ +VV+A E + EC H C + CG S R + + Sbjct: 63 GGYRLTRAAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWRLINDVVSEA 121 Query: 122 LTQYSIECLV 131 L ++ ++ Sbjct: 122 LRDVTLAQIL 131 >gi|78186422|ref|YP_374465.1| hypothetical protein Plut_0538 [Chlorobium luteolum DSM 273] gi|78166324|gb|ABB23422.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum DSM 273] Length = 136 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y A D + ++AE S FL K +Q L +AGI +V+G Sbjct: 3 QVSRKFEYGLHAVAYLASRGVDRVVTVKEMAEEIGFSPEFLAKAMQSLTRAGIASSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG +L R A+ IT+ D+ A E + + C +C + SC + N Sbjct: 63 KGGYQLARKAESITVADIGTAIEGAPHLVRCVV-KADNCEIYSSCPHRGYMTSLQNRIQG 121 Query: 121 VLTQYSIECLVRNRS 135 +L +++ L+ + Sbjct: 122 LLASTTVQALLDTET 136 >gi|172057254|ref|YP_001813714.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989775|gb|ACB60697.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 130 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IRVL++ +H +I ++A+ IS+ L KI+ L + G++ + +GR Sbjct: 1 MKMTRSTDYAIRVLLFTTLHPTRLVQIQEVADYYDISKNHLMKIVHALSRFGLITSYQGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L + +IT+ ++V+ E E F D L + A F + Sbjct: 61 NGGFKLAKDPSEITLGEIVQLFE-KVSYLESFPEIHEDENLEN---MKEAFDYAFLQFSE 116 Query: 121 VLTQYSIECLVR 132 L YS++ L+ Sbjct: 117 ALKAYSLQDLIH 128 >gi|188582606|ref|YP_001926051.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi BJ001] gi|179346104|gb|ACB81516.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium populi BJ001] Length = 188 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 6/145 (4%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 HL+ TDYG+R+LM + IA+ IS L KI Q LV+AG+VE +GR Sbjct: 20 HLSLHTDYGLRLLMRLTLVEPGAWIATPTIAQRFGISVHHLQKIAQALVRAGVVEARQGR 79 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL + I + +V E V +C + C L+ C L L A AFF Sbjct: 80 AGGVRLAQNPRDIRLGRLVAELEGVGTVVDC---RRDPCRLLSRCRLKWALDAAEQAFFL 136 Query: 121 VLTQYSIECLVRN--RSSIKKIFNA 143 L + ++ + +++ +F+ Sbjct: 137 ELDRLTLADVAAGSTAAALGALFDE 161 >gi|326387606|ref|ZP_08209212.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207652|gb|EGD58463.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 150 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 5/143 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T Y IR L + A R+ IAEA I FL IL + + GIV + RGR Sbjct: 2 LSQKTRYTIRALQHLADAFGQGSVRLDAIAEAQNIPRKFLTVILSEMAREGIVISQRGRD 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117 GG L P I D+++ S + C + + +C C L ++ + + Sbjct: 62 GGYELALPPVDIRYGDIIRLCRGSLALVPCASRNAHETCANCLPEEECRLRGLMLQLRDE 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 +L + ++ ++ ++ Sbjct: 122 TAAILDRITLADPIQVEPPFDQM 144 >gi|70726295|ref|YP_253209.1| hypothetical protein SH1294 [Staphylococcus haemolyticus JCSC1435] gi|68447019|dbj|BAE04603.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 140 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENSLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PAD+I D+++ E + E S + + +A Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPITIVESIESEPP--------AQKQLWLRMRDAVR 112 Query: 120 DVLTQYS---IECLVRNRSSIK 138 +VL + + V + Sbjct: 113 EVLDNTTLKYLADYVETDDKLN 134 >gi|291286176|ref|YP_003502992.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290883336|gb|ADD67036.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 154 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +T Y ++ L Y A HN IS IAE I + FL IL L G + + G+ Sbjct: 2 FSMKTVYALKALQYLAESHNQGNVMISVIAENEGIPKKFLETILLTLKNEGFLTSRIGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKALN 116 GG +L ++I + D++ A E + + C C CG +L K Sbjct: 62 GGYKLALAPNEINLKDIISALEGNIALIPCAVHETGEKKCDQCRDYELCGTRLILTKISE 121 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 DVL+ ++ ++ ++ Sbjct: 122 RLADVLSSNTLADMIGETEKARQ 144 >gi|218248538|ref|YP_002373909.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061606|ref|YP_003139494.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169016|gb|ACK67753.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 8801] gi|256591772|gb|ACV02659.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 8802] Length = 147 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R+ Y ++ L+ ++ + P + IA + +L K+L + ++G+V++VRG Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIALRQDLPAPYLEKLLIEMRRSGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L QI++ +++A E+ ++ D S+ ++ Sbjct: 61 SQGGYQLAYQPSQISLGQILEAVGETIEP---LPGYQPDIEQGSDWVTFSLWKRLHEKLK 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L + ++ L + S + Sbjct: 118 EALYKITLADLYYDARSWQASLGE 141 >gi|126643101|ref|YP_001086085.1| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978] Length = 144 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MY A +D P I++IA+ +S+ L K++ + K + T+RG+ GG+RL A + Sbjct: 1 MYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGKGGGIRLNPKALDLK 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +V+ + + EC + C L CGL +L +AL +F+ L QY++ +++ Sbjct: 61 LGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQYTLGEVLQQP 117 Query: 135 SS 136 S Sbjct: 118 KS 119 >gi|220909499|ref|YP_002484810.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866110|gb|ACL46449.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7425] Length = 145 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ + P + IA+ + +L K+L + +AG+V ++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPNYGPTSVQAIAQRQDLPAPYLEKLLIAMRRAGLVHSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R QI++ +++A ES FA G ++ ++ Sbjct: 61 AQGGYQLARSPAQISLAQILEAVGESIEPL--FAQRAAQ---SGDWLTLTLWKRLQQKLR 115 Query: 120 DVLTQYSIECL 130 + L ++E L Sbjct: 116 ESLYTITLEDL 126 >gi|312129033|ref|YP_003996373.1| transcriptional regulator, badm/rrf2 family [Leadbetterella byssophila DSM 17132] gi|311905579|gb|ADQ16020.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella byssophila DSM 17132] Length = 139 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 3 LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K+ Y ++ L ++ + P IS+I+E I + FL IL L GI+++ +G+ Sbjct: 2 ISKKAKYALKALTRLTLNYETRKPLLISEISETENIPKKFLEAILLELRNNGILQSQKGK 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116 GG L P ++ I +++ + C F DC +C + ++++ + Sbjct: 62 GGGYLLKLPPAEVKIARIIRVIDGPIAPLLCVSLHFYDKCEDCSSEEACKIRPLMQQIRD 121 Query: 117 AFFDVLTQYSIECL 130 A V +++ L Sbjct: 122 ANLTVYENTTLQDL 135 >gi|300865571|ref|ZP_07110350.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300336443|emb|CBN55500.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 147 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ + P + IA + +L K+L + ++G+V +VRG Sbjct: 1 MKLTTRGHYSVKALLDLSSQPGYGPASVKAIASRQELPAPYLEKLLIEMRRSGLVLSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R I++ +++A E+ A H D + S+ + Sbjct: 61 TQGGYQLARRPASISLGQILEAVGETIEP---LAGHSPDATVAEDWVTFSLWNRLHKKIT 117 Query: 120 DVLTQYSIECL 130 + L S+E L Sbjct: 118 EALYSISLEDL 128 >gi|116624954|ref|YP_827110.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228116|gb|ABJ86825.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 141 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 10/145 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH + + +Y ++ + A + P RI+ IA+ I + FL IL L +AG VE+ RG Sbjct: 1 MHTSVKGEYALQAIFDLASQRSGEPIRIADIAQRQKIPQKFLELILASLKQAGFVESRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPAD +T+ +V++ E + + + + A Sbjct: 61 AEGGYLLSRPADSLTVGEVLRYVEGP-------QGKSRKGRKGPATPFSDMWEQVDAAVS 113 Query: 120 DVLTQYSIECLVR--NRSSIKKIFN 142 V+ + + L R K + N Sbjct: 114 SVIDKTTFADLQRAWQEQQNKYVLN 138 >gi|255020951|ref|ZP_05293007.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus caldus ATCC 51756] gi|254969742|gb|EET27248.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus caldus ATCC 51756] Length = 148 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H D ++ I++ IS +L ++ L + G+VE+VRG GG RL P Q Sbjct: 1 MLDLALHQDGGVVTVADISQRQQISVAYLEQLFGRLRRRGLVESVRGPGGGYRLADPTAQ 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIECLV 131 I + +V+A ES +C C G C + L ++ LV Sbjct: 61 IPLTQIVEAVNESIHTTQCGGDPVQCCKGEGQQCLTHDLWEALGQQIAAFLGGITLAQLV 120 Query: 132 RNRS 135 + Sbjct: 121 AEQR 124 >gi|315502962|ref|YP_004081849.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|315409581|gb|ADU07698.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 145 Score = 126 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +R+ M A + ++A + + K++Q L + G++ T+RGR Sbjct: 1 MRLNRSTDMALRIAMLTAASP-VRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV A IT+ VV+A E V +C + CPLV C L LR+A AF Sbjct: 60 SGGVAFAEHAGDITVGRVVRAFEGDGEVVDCA---QPVCPLVAECRLRGELRRAQAAFLA 116 Query: 121 VLTQYSIECLVR 132 VL + LV Sbjct: 117 VLDGVRLGDLVD 128 >gi|154503668|ref|ZP_02040728.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149] gi|153795768|gb|EDN78188.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149] Length = 486 Score = 126 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR++ Y A N ++++ I ++ KI + L + IV+ G Sbjct: 1 MQLTNTTDYAIRIVCYLASEN-KVITTAELSRELNIPASYIPKITKQLKEKEIVKAAEGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 GG L + ++I+++DV+ TE + ++ C C C + VL N + Sbjct: 60 NGGYMLEKRPEEISLMDVINCTESTMAISRCLEKDGY-CSRNYSDCCKVHKVLLDLQNTY 118 Query: 119 FDVLTQYSIECLVR 132 + L I +++ Sbjct: 119 NNRLENVKISDIIQ 132 >gi|300021837|ref|YP_003754448.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] gi|299523658|gb|ADJ22127.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium denitrificans ATCC 51888] Length = 165 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+T + IR+L+ C + ND +++ +++ +++ +FKI+ L AG + VRG Sbjct: 1 MRLTKQTGHAIRILIDCTLANDELVKVADVSDRLGVTKQNVFKIVHILSHAGFLSAVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGVRL +PA I I DVV+A E + E + ++ AL+AF Sbjct: 61 NGGVRLAKPATSIKIGDVVRAIEVTRVQVE--GGRGRKTVDNDPASINAMFDDALSAFIS 118 Query: 121 VLTQYSIECLVRNRSSI 137 VL Q+++ L +S + Sbjct: 119 VLDQHTLAELASQKSPL 135 >gi|311894108|dbj|BAJ26516.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae KM-6054] Length = 145 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYAARALVELACDTGRPLTCEAIASSQEIPFRFLKSVVGDLRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA +IT+LDVV+A + + P + L + R+ + Sbjct: 61 EGGYWLGRPAAEITLLDVVRAVDGELITLRGEPLTGLAYP-GPADALPGIWREVEERAGE 119 Query: 121 VLTQYSIECLV 131 VL ++ LV Sbjct: 120 VLAGTTVAALV 130 >gi|37521489|ref|NP_924866.1| hypothetical protein glr1920 [Gloeobacter violaceus PCC 7421] gi|35212486|dbj|BAC89861.1| glr1920 [Gloeobacter violaceus PCC 7421] Length = 148 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 4/143 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ R Y ++ ++ IH D P I QIA IS+ FL ++L L ++G V +VRG Sbjct: 3 KLSTRGHYSVKAMLDLTIHRHDPPQPIRQIARRQNISKHFLEQLLILLRQSGFVRSVRGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L R QIT+ ++++A + + D ++ + + Sbjct: 63 QGGYVLARLPAQITLGEILRAVGDGMAP---LGRIERDGTQAEDWVTMALWSRVHRSVEA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 L + ++E L + S + + Sbjct: 120 ALDRITLEDLYHDARSRQAALSE 142 >gi|256392947|ref|YP_003114511.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256359173|gb|ACU72670.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 151 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY +RV++ A H + S + + + F+ IL L +A +V + RG Sbjct: 1 MHISAKADYAVRVMLELAAHGPGVVKASVVIDHQDLPRKFIEAILVELRRADLVRSHRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA I+I VV+A + H+ + L A A Sbjct: 61 DGGYTLARPAAAISIGSVVRAVDGPLAEVRGLRPHETEYAGAAE-HLADCWVAARAALRK 119 Query: 121 VLTQYSIECLVRNR 134 VL + S+ ++ R Sbjct: 120 VLDETSLAQVLDGR 133 >gi|218283509|ref|ZP_03489499.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989] gi|218215777|gb|EEC89315.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989] Length = 480 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR++ Y A HN S++++ I+ ++ KI + L A I+ G Sbjct: 1 MQLKSSTDYAIRIVCYLATHNG-MISTSELSKQLYIATTYIPKIAKKLKDANIIVACEGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 +GG L + A+ I++ +++ EE+ + C C C + VL N + Sbjct: 60 KGGYTLAKRAEDISLKEIISCMEETMAINRCLERDGF-CSRNAVNHCRVHKVLLDVQNTY 118 Query: 119 FDVLTQYSIECLVR 132 + L + L+R Sbjct: 119 NNKLENIKVSDLIR 132 >gi|54293583|ref|YP_125998.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens] gi|53753415|emb|CAH14868.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens] gi|307609396|emb|CBW98885.1| hypothetical protein LPW_06721 [Legionella pneumophila 130b] Length = 153 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG V++Y A H IA ++ + KIL+ L AG++ +VRG Sbjct: 3 RVSKLADYGTVVMVYLAKHPQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVS 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA +I++ ++ A EE EC + DC L G C + R +A Sbjct: 63 GGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETA 121 Query: 122 LTQYSIECLVRNRSSIKKI 140 L S+E L + + + Sbjct: 122 LDSVSLEALAKPTLPTRDV 140 >gi|221315013|ref|ZP_03596818.1| hypothetical protein BsubsN3_14952 [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 110 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L D IT D+++ E + +C Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKC 92 >gi|120405372|ref|YP_955201.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958190|gb|ABM15195.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium vanbaalenii PYR-1] Length = 158 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIELATADDGALVKTDDLAKAQGIPPQFLVDILSDLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RPA I+I DV++ + + + LT V R + Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL Q S+ + Sbjct: 120 SVLEQTSVADVA 131 >gi|254480074|ref|ZP_05093322.1| rrf2 family protein (putative transcriptional regulator) [marine gamma proteobacterium HTCC2148] gi|214039636|gb|EEB80295.1| rrf2 family protein (putative transcriptional regulator) [marine gamma proteobacterium HTCC2148] Length = 144 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A+H P ++ I+ IS +L ++ L + +V +VRG GG RL R + Sbjct: 1 MLDLALHGSSGPVSLADISGRQDISLSYLEQLFAKLRRNDLVTSVRGPGGGYRLSRHTGE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + +V A E+ C DC C + + L+Q S+ LV Sbjct: 61 IFVAQIVDAVNEAVDATGC--GGTSDCQQGEVCLTHHLWCDLSDQIHGFLSQISLANLVE 118 Query: 133 NRS 135 + Sbjct: 119 RKE 121 >gi|67459239|ref|YP_246863.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia felis URRWXCal2] gi|67004772|gb|AAY61698.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia felis URRWXCal2] Length = 139 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + P +++I+ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMAAKSSAEPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 +GG L ++I I D++ A E+F + C+ C P C + + Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWKGLSKHI 120 Query: 119 FDVLTQYSIEC 129 D SI+ Sbjct: 121 RDYFENISIKD 131 >gi|157691453|ref|YP_001485915.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680211|gb|ABV61355.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 145 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSATYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + + I+ LDV++A E + C H P G C + ++ Sbjct: 61 AKGGYTILKKKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHNG-CLIEQAMQDVETKMQ 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + L+Q + + +K Sbjct: 120 ETLSQKRLVDIASQIEQTEK 139 >gi|323518180|gb|ADX92561.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] Length = 164 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D P +AE +S F+ KI L KAG+V G RGG L R A +I+ LD+V Sbjct: 3 NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIV 62 Query: 80 KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 A E + EC F + D G C + +V+ +A A D L +++ + Sbjct: 63 NAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDI 122 Query: 131 VRN 133 Sbjct: 123 ADR 125 >gi|240169536|ref|ZP_04748195.1| hypothetical protein MkanA1_09496 [Mycobacterium kansasii ATCC 12478] Length = 161 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATAPTGNLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RP +I+I DV++ + + + LT V R + Sbjct: 61 REGGYELARPGSEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLVR 132 VL + ++ + Sbjct: 120 SVLEETTLADVAA 132 >gi|113475528|ref|YP_721589.1| BadM/Rrf2 family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110166576|gb|ABG51116.1| transcriptional regulator, BadM/Rrf2 family [Trichodesmium erythraeum IMS101] Length = 147 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ + P + +IA I +L K+L + + G+V + RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQQSNTPVSVKEIAVRQNIPVAYLEKLLIEMRRGGLVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + QI++ +++++ E+ + + + + Sbjct: 61 AQGGYQLAKLPAQISLGEILESVGETIEP---LFKYTPNASHAEDWVTYCIWHRIHKKLS 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L S+E L + S + + Sbjct: 118 EALYNISLEDLYYDVRSWQTVVGE 141 >gi|294083583|ref|YP_003550340.1| BadM/Rrf2 family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292663155|gb|ADE38256.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Puniceispirillum marinum IMCC1322] Length = 164 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 60/129 (46%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L + TDY I VL A D + +AE + + + K+ + LV A ++ T RG Sbjct: 3 RLNRMTDYAIVVLGALAHKRDETVATALLAELTGLKQPTVAKVAKNLVAADLLVTQRGVN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA I+++D+V+A E V +C C + C + + + A Sbjct: 63 GGYRLVRPARSISLVDIVEAMEGPIAVTDCVDGAPDPCAVTHCCFMANNWNRVNLAIRGA 122 Query: 122 LTQYSIECL 130 L ++E L Sbjct: 123 LEAVTLEDL 131 >gi|125654633|ref|YP_001033827.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126464902|ref|YP_001041878.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221634495|ref|YP_002523183.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332561319|ref|ZP_08415634.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77386293|gb|ABA81722.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126106717|gb|ABN79242.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|221163368|gb|ACM04330.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332274118|gb|EGJ19435.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 169 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 7/148 (4%) Query: 3 LTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A P RI IA+ + FL IL + AG + + RG Sbjct: 2 ITQKMKYALKALMVLAEEKSGDRRPLRIEDIAQRSGTPKRFLEHILLDIRNAGYIASTRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + Q+ + ++++ + C + DC +C + V Sbjct: 62 RSGGYLLIKEPAQVPLSELLRMIDGPIAPLPCLSRRSYQKCEDCTDEETCRIRKVFAGIF 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 ++ ++ ++ LV ++ ++I A Sbjct: 122 WSYLVLIDSLTLADLVGVPAAAEQILAA 149 >gi|290960745|ref|YP_003491927.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260650271|emb|CBG73387.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 152 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ D P + IA I FL IL L + G+V + RG Sbjct: 1 MRISARADYAVRAVLEVAVRQDGGPVKAEVIATVQEIPHKFLEGILGDLRRGGLVTSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R IT+ DV++A + + L + Sbjct: 61 GSGGYRLAREPAAITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWIALRANVR 119 Query: 120 DVLTQYSIECLVR 132 +L ++ + Sbjct: 120 RILEGVTVADIAA 132 >gi|160901533|ref|YP_001567114.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95] gi|160359177|gb|ABX30791.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis SJ95] Length = 150 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI-------HNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M LT ++ Y IR L + I++IAE+ +S+ FL KI L KA I Sbjct: 1 MSLTVKSCYAIRGLYEMYKLQNRNEDEKNTKISIAKIAESSGVSQEFLAKIFAELKKAKI 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 V + +G+ GG + ++I + ++V+ E +C + + C +C + V ++ Sbjct: 61 VSSEKGKFGGFYFTKAPEKINLSEIVEVLEVPLNSYDCVSGGE--CENQKNCPVEFVWKR 118 Query: 114 ALNAFFDVLTQYSIECLVR 132 +A F+ L++ +++ ++ Sbjct: 119 VQDAIFNELSKITLKDVIE 137 >gi|302869746|ref|YP_003838383.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315503772|ref|YP_004082659.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|302572605|gb|ADL48807.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] gi|315410391|gb|ADU08508.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 147 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 11/145 (7%) Query: 1 MHLTKRTDYGIRVLMYCA----------IHNDYPNRISQIAEACCISELFLFKILQPLVK 50 M+++ R DY +R ++ A + + +AE+ I FL IL L + Sbjct: 1 MYISARADYALRAMLAVADAAVTTGDPAAGGGELVKAASLAESQGIPLSFLQGILLDLRR 60 Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110 AG++ + RG GG L RP D+I++ DV++A + + + V + GL V Sbjct: 61 AGLLHSHRGTEGGYALTRPPDEISVGDVLRAVGGAITSVRGIPADRAGYHGVAT-GLRDV 119 Query: 111 LRKALNAFFDVLTQYSIECLVRNRS 135 A V+ + ++ L+ +R+ Sbjct: 120 WLAVDGAIALVVDRTTLADLLSDRA 144 >gi|302866552|ref|YP_003835189.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|302569411|gb|ADL45613.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] Length = 145 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TD +R+ M A + ++A + + K++Q L + G++ T+RGR Sbjct: 1 MRLNRSTDMALRIAMLTAASP-VRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIRGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV A IT+ VV+A E V +C + CPLV C L LR+A AF Sbjct: 60 SGGVAFAEHAGDITVGGVVRAFEGDGEVVDCA---QPVCPLVAECRLRGELRRAQAAFLA 116 Query: 121 VLTQYSIECLVR 132 VL + LV Sbjct: 117 VLDGVRLGDLVD 128 >gi|218887632|ref|YP_002436953.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758586|gb|ACL09485.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 152 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT RT Y RVL+ A+H + P + ++ IS FL +IL+ L +AG+ + RG Sbjct: 1 MKLTARTRYAARVLVALAVHGTEGPLTTTALSRHTDISVQFLEQILKDLRRAGLTASARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV-LRKALNAF 118 GG RL P +I++ VV+ E +AE D P LT + +A +A Sbjct: 61 AMGGHRLALPPTKISLGTVVRLMEGGIRIAE-----HCDLPATPGDRLTCLGWTRAADAV 115 Query: 119 FDVLTQYSIECLVRNRSSI 137 L +++ L + + Sbjct: 116 ESALDSITLDDLAKGLPDL 134 >gi|111019257|ref|YP_702229.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110818787|gb|ABG94071.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 158 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RV+M A+ D IAE +S K++ L + GIV+ RG Sbjct: 1 MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYAHAAKVITRLSELGIVDARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + ++ + + E V +C CPL C L S LR+A NAFF Sbjct: 61 RAGGLAITELGRTASVGWLARRLEGDAEVVDC--DGAQPCPLRSGCLLRSALRRAQNAFF 118 Query: 120 DVLTQYSIECLVRNRSS 136 + L +IE L R+ + Sbjct: 119 ESLDALTIEDLTRSPTG 135 >gi|78358152|ref|YP_389601.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220557|gb|ABB39906.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 146 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ RT Y R+L+ A+H+ + P R S ++++ ++ F+ +IL+PL K G+V +VRG Sbjct: 1 MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++T+ +V+ E + EC + + C C V + A Sbjct: 61 AAGGHLLAADPQELTLGHIVRVMEGGIHMTEC-SRDETACERAHQCRTRQVWIRISRAME 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L ++ L+++ S I Sbjct: 120 QELEAITLSDLMQDASII 137 >gi|54296620|ref|YP_122989.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris] gi|53750405|emb|CAH11799.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris] Length = 153 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 1/139 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG V++Y A H+ IA ++ + KIL+ L AG++ +VRG Sbjct: 3 RVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVS 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA +I++ V+ A EE EC + DC L G C + R +A Sbjct: 63 GGYRLQRPAAEISVSQVIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETA 121 Query: 122 LTQYSIECLVRNRSSIKKI 140 L S+E L + + + Sbjct: 122 LDSVSLEALAKPTLPTRDV 140 >gi|302866226|ref|YP_003834863.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315502784|ref|YP_004081671.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|302569085|gb|ADL45287.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] gi|315409403|gb|ADU07520.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 151 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R + A IA + FL +L L +AG+V RG Sbjct: 1 MQISARGDYAVRAALSLATAYPTLLSTQAIAAEQDMPRKFLEAVLADLRRAGVVRAQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +ITI V++A + + L + + Sbjct: 61 EGGYTLARPPREITIGHVLRAVDGPLAGVRGLRPEETRYEGAAE-NLPRLWVAVRASVRR 119 Query: 121 VLTQYSIECLVRNR 134 V+ + S++ LV R Sbjct: 120 VVDEVSLDELVSGR 133 >gi|194016021|ref|ZP_03054636.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012376|gb|EDW21943.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 145 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 2/140 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSSTYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + + I+ LDV++A E + C H P G C + V++ Sbjct: 61 AKGGYAIMKQKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHDG-CLIEQVMQDVETKMQ 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + L+Q + + +K Sbjct: 120 ETLSQKRLVDIASQIEQTEK 139 >gi|88811720|ref|ZP_01126974.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231] gi|88791111|gb|EAR22224.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231] Length = 153 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 59/129 (45%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + TDYGI +L A +++A+ + + + KIL+ L + GI+ + RG + Sbjct: 3 RINRETDYGISILTLMARRRRERFNAAELAQWRRLPQPIVSKILKHLARNGILISYRGVQ 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R ++I++ D++ A E + EC C +C +++ R Sbjct: 63 GGYALARSPEEISLADIIVALEGPISLTECVIGGADACQYGANCAVSARWRHINQKIRMA 122 Query: 122 LTQYSIECL 130 L S+ + Sbjct: 123 LEAISLAEM 131 >gi|52840837|ref|YP_094636.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148360750|ref|YP_001251957.1| rrf2 family transporter protein [Legionella pneumophila str. Corby] gi|52627948|gb|AAU26689.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148282523|gb|ABQ56611.1| rrf2 family protein [Legionella pneumophila str. Corby] Length = 153 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 1/139 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG V++Y A H+ IA ++ + KIL+ L AG++ +VRG Sbjct: 3 RVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVS 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RPA +I++ ++ A EE EC + DC L G C + R +A Sbjct: 63 GGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETA 121 Query: 122 LTQYSIECLVRNRSSIKKI 140 L S+E L + + + Sbjct: 122 LDSVSLEALAKPTLPTRDV 140 >gi|257784030|ref|YP_003179247.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] gi|257472537|gb|ACV50656.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM 20469] Length = 167 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y ++ + R+ AE ISE +L K L KAGIV + G Sbjct: 1 MKFSIGIEYALHCLLYMVDLNENKSIRVRDFAEFQGISESYLSKTFTQLSKAGIVLSSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL----------VGSCGLTS 109 +GG RL + I+ D+V+A E + +C + L C ++ Sbjct: 61 IKGGYRLAKSPQSISFWDIVEAIEGKDPLFQCHEIRLSNSTLKEIGVLQKADKSPCLISG 120 Query: 110 VLRKALNAFFDVLTQYSIECL 130 V+ + L++ ++ L Sbjct: 121 VMHQGEKEMKKFLSKKTLRWL 141 >gi|118472493|ref|YP_885725.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family protein [Mycobacterium smegmatis str. MC2 155] gi|118173780|gb|ABK74676.1| transcriptional regulator, BadM/Rrf2 family protein [Mycobacterium smegmatis str. MC2 155] Length = 153 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MHLT+ TD G+R LM + D IA++ SE + K + LV+ G+V R Sbjct: 1 MHLTRFTDLGLRTLMLLSAGESQDQRVTTRTIAKSANASEHHVAKAVSKLVEMGMVHARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L +I +V+ E V EC CPL+ +C L L +A AF Sbjct: 61 GRVGGLELTEAGRTASIGRLVRELEGDREVIEC--GGAAPCPLIAACRLRRALAEAKEAF 118 Query: 119 FDVLTQYSIECL 130 + L +Y++ L Sbjct: 119 YRELDRYTVTDL 130 >gi|210632890|ref|ZP_03297589.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279] gi|210159358|gb|EEA90329.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279] Length = 150 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51 M ++ + Y +++++Y A + ++AE IS +L ++++PL+ A Sbjct: 1 MLISSKGRYALKLMIYIAAIGGDPAAGAKAAPAVSLREVAEREQISLKYLEQLVRPLMNA 60 Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 G++ +VRG+ GG L PA I D+++A E C + C C Sbjct: 61 GLLRSVRGKGGGYVLAVPAQDIRAGDILRAAEGERSTVAC-EGLEGTCGRSDLCSTVKFW 119 Query: 112 RKALNAFFDVLTQYSIECLVR 132 + ++ L Sbjct: 120 TGLEETIEAYVDGVTLAELAH 140 >gi|291460624|ref|ZP_06600014.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416815|gb|EFE90534.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 167 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L+Y A + + RI ++ ISE +L K L KAGI+ + G Sbjct: 1 MKFSVAVEYALHGLIYMAGLEENKSIRIQDMSRFQGISESYLSKTYAKLAKAGIISSAAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-------------SCG 106 +GG RL +PA+QI+ DV++A E + C ++ C + C Sbjct: 61 AKGGYRLSKPAEQISFWDVIEAIEGKEPLFRC---EELRCKSISVNIDALPEEYTNTPCL 117 Query: 107 LTSVLRKALNAFFDVLTQYSIECL 130 ++ V+ A N L+ +I L Sbjct: 118 ISRVMHDAENEMKRYLSGKNIGWL 141 >gi|329934459|ref|ZP_08284538.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] gi|329306055|gb|EGG49910.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces griseoaurantiacus M045] Length = 152 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 1/144 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH++ + DY R L+ A P IA + I FL ++ L +AG+V + RG Sbjct: 1 MHISAKADYATRALLELAREPSRPLTCEAIASSQHIPFRFLKSVVGELRRAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA+ IT+LDV A + +D P + GL +V R+ Sbjct: 61 EGGYWLGRPAEAITLLDVAHAVDGELITLRGEPLTGLDYP-GPASGLPAVWRRIEEEAAA 119 Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144 +L ++ L+ +S +G Sbjct: 120 LLRSTTLTSLLPGEASAPLPAGSG 143 >gi|146279770|ref|YP_001169928.1| hypothetical protein Rsph17025_3759 [Rhodobacter sphaeroides ATCC 17025] gi|145558011|gb|ABP72623.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 158 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 7/148 (4%) Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A RI IA + FL IL + AG + ++RG Sbjct: 2 ITQKMKYALKALMVLAEERAGERRALRIEDIAARSGTPKRFLEHILLDIRNAGFIASLRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + QI + D+++ + C + DC +C + V + Sbjct: 62 RSGGYLLIKEPSQIPLSDLLRMIDGPIAPLPCLSRRSYQRCEDCTDEAACRIRKVFAEIF 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 ++ ++ ++ LVR ++ ++I A Sbjct: 122 WSYLLLIESLTLADLVRTPAAAEQIMAA 149 >gi|270158822|ref|ZP_06187479.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968] gi|289166385|ref|YP_003456523.1| hypothetical protein LLO_3073 [Legionella longbeachae NSW150] gi|269990847|gb|EEZ97101.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968] gi|288859558|emb|CBJ13523.1| putative conserved hypothetical protein [Legionella longbeachae NSW150] Length = 153 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG V++Y A H IA ++ + KIL+ L AG++ +VRG Sbjct: 3 RISKLADYGTVVMVYLARHAQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVT 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L RPA +I++ ++ A EE EC ++H C L C + R A Sbjct: 63 GGYQLRRPATEISVSQIIFALEEHRGFTEC-SAHPNGCSLQDVCTIQGNWRLISQAIETA 121 Query: 122 LTQYSIECLVR 132 L S+ L + Sbjct: 122 LDSVSLATLAK 132 >gi|226363891|ref|YP_002781673.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226242380|dbj|BAH52728.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 154 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ ++ + + + + P +++A+ +S+ +L K LQ L +AG+V GR Sbjct: 3 MKISGGVEWSLHCCVVLS-QAEGPVPTARLADLHGVSKSYLAKHLQSLARAGLVHPTEGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R IT+LDVV+A + + C A+ C CG+ V+ Sbjct: 62 DGGYVLTRAPADITVLDVVQAVDGAGPAFRCTEIRQQGLLAAPPEQCK--TPCGIAKVMA 119 Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142 +A A+ L+ +I L + +++++ Sbjct: 120 EAERAWRASLSGVTIADLAATLDLTALRRTLE 151 >gi|77464012|ref|YP_353516.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462857|ref|YP_001043971.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332558886|ref|ZP_08413208.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77388430|gb|ABA79615.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides 2.4.1] gi|126104521|gb|ABN77199.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17029] gi|332276598|gb|EGJ21913.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 155 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L+ A+ + ++++++ IS +L ++ L +AG+VE V Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L RPA+ I + ++++A EE+ A + LT+ L + L+A Sbjct: 61 RGPGGGYKLARPAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120 Query: 118 -FFDVLTQYSIECLVRNR 134 + L Q + +++N Sbjct: 121 HVYVFLHQTRLSDIIKNE 138 >gi|73667036|ref|YP_303052.1| BadM/Rrf2 family transcriptional regulator [Ehrlichia canis str. Jake] gi|72394177|gb|AAZ68454.1| transcriptional regulator, BadM/Rrf2 family [Ehrlichia canis str. Jake] Length = 533 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y + ++ A ++ P ++S IA++ +SE +L +I+ L K G+V Sbjct: 1 MLITTRLRYAVMFMVSLAQEYYILKGSNQPKKMSHIADSQSLSEGYLEQIIAKLKKQGLV 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRK 113 + +G GG L + + IT+ ++++ E+ + C ++ I C P C ++ Sbjct: 61 NSTKGPGGGYFLNKSPNIITLNLILESIGENIKITRCKNNNVIRCLPNNAKCITHNLWDN 120 Query: 114 ALNAFFDVLTQYSIECLVRNR 134 N L S+E ++ N Sbjct: 121 IGNYIKKYLNSISLEDIINNN 141 >gi|312144048|ref|YP_003995494.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] gi|311904699|gb|ADQ15140.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp. 'sapolanicus'] Length = 149 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R LMY A + +IAE ISE +L ++ L KA +V+ +RG Sbjct: 1 MEISSQARYGLRALMYIAASEGSQAIPLREIAEKQNISERYLEQLFAKLKKADLVKGIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + ++IT D++K E + + + + N F Sbjct: 61 AHGGYLLNQSPEEITAADILKVLEGPVISEQGPEKISSEAEIYKKAA-YELWNGLENLIF 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 L ++ L + + IK Sbjct: 120 KHLAAITLADLSKRAAEIK 138 >gi|260425936|ref|ZP_05779915.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] gi|260420428|gb|EEX13679.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] Length = 153 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + I++ +S +L ++ L +AG+V +VRG Sbjct: 1 MKLSTKGRYAMVALADIAMQPDGDLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I ++D++ A +E+ A + LT+ L ++L+A Sbjct: 61 PGGGYRLARPASEIRVVDILAAVDETVDAMHKGAGASGAASGSRAQSLTNRLWQSLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + ++ N Sbjct: 121 YVFLHQTRLSDVIDN 135 >gi|269120156|ref|YP_003308333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sebaldella termitidis ATCC 33386] gi|268614034|gb|ACZ08402.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis ATCC 33386] Length = 144 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ ++M A + + IA + +SE +L +I+Q L K ++ + R Sbjct: 1 MRISTKGRYGLYLMMELAGNCTKSRCISLKNIAASQGVSEKYLEQIVQILNKEKLLISTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG +L +I++ +++ E++ + EC + + C V K Sbjct: 61 GAYGGYKLASKPSEISVGTILRCLEKTIDIPECEETADKSVFVSIVC--KEVYEKIDEVV 118 Query: 119 FDVLTQYSIECLVRNRSS 136 ++L ++E L+ Sbjct: 119 NNLLNNITLEDLLNKYDE 136 >gi|308176299|ref|YP_003915705.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743762|emb|CBT74734.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 152 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD +R +M A +I+E+ + + K + L GI++ RGR Sbjct: 1 MKLSAFTDVCLRTIMVLATPGTGQLTSREISESVGVPYNHVAKAVLELRTLGILQVTRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A + ++ +++ ++ + +C + +CPL G+C L +V R+A AF+ Sbjct: 61 NGGAMLTGAALESSLGGLLRKLDKRTDIVDCSDHDAQSNCPLAGNCRLRAVFRQAREAFY 120 Query: 120 DVLTQYSIECLV 131 L I+ + Sbjct: 121 ASLDALKIQDIC 132 >gi|108800879|ref|YP_641076.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS] gi|119870019|ref|YP_939971.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS] gi|126436505|ref|YP_001072196.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS] gi|108771298|gb|ABG10020.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS] gi|119696108|gb|ABL93181.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS] gi|126236305|gb|ABN99705.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS] Length = 162 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATADDGVLVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RPA I+I DV++ + + + LT V R + Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL Q S+ + Sbjct: 120 SVLEQTSLADVA 131 >gi|254774316|ref|ZP_05215832.1| hypothetical protein MaviaA2_06565 [Mycobacterium avium subsp. avium ATCC 25291] Length = 161 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RP I+I DV++ + + + LT V R + Sbjct: 61 REGGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL + ++ + Sbjct: 120 LVLEETTLADVA 131 >gi|254439600|ref|ZP_05053094.1| Transcriptional regulator superfamily [Octadecabacter antarcticus 307] gi|198255046|gb|EDY79360.1| Transcriptional regulator superfamily [Octadecabacter antarcticus 307] Length = 153 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + L A+ ++P I +A+ IS +L ++ L AG+V +VRG Sbjct: 1 MKLTTKGRYAMVALTDLALEATEHPVSIRALAKRQDISVTYLEQLFVKLRGAGLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L RP I I+DV+KA +ES A + +T+ L + L+A Sbjct: 61 PGGGYSLARPPSDIRIVDVLKAVDESVSAMHTGAGVSGGASGSKAQSMTNRLWEGLSANV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V N Sbjct: 121 YVFLHQARLSDVVEN 135 >gi|153006770|ref|YP_001381095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030343|gb|ABS28111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 13/142 (9%) Query: 1 MHLTKRT---DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M + +Y + L+ A+ ++ P + +A + E FL K+ L KAG+VE Sbjct: 1 MKSSLYGAGAEYALHSLLILAVRSE-PVSVRDLARFQDLPERFLAKLFTRLQKAGLVEAT 59 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108 G RGG L RPA +I + DV++A + + + EC F + + G C + Sbjct: 60 EGVRGGFALARPAARIAVRDVLEAVDPNRTLFECAEIRRHCALFGAEPPAWSISGMCRIH 119 Query: 109 SVLRKALNAFFDVLTQYSIECL 130 +++A A L ++ L Sbjct: 120 LFMKEAEGALQGFLASKTLADL 141 >gi|317123685|ref|YP_004097797.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Intrasporangium calvum DSM 43043] gi|315587773|gb|ADU47070.1| transcriptional regulator, BadM/Rrf2 family [Intrasporangium calvum DSM 43043] Length = 154 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 6/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ R DY +R ++ A P I +A + FL I L +A +V + Sbjct: 1 MDISARVDYAVRAMLILAEAAASGSGPVSIEALATEQELPRKFLEAIFADLRRAELVLSR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L RP +I++ DV +A + H+ V L S+ + Sbjct: 61 RGALGGYALARPQREISVGDVFRAVDGPLAEVRGLRPHETSYAGVAQ-HLPSLWVAVRAS 119 Query: 118 FFDVLTQYSIECLVRN--RSSIKKIFNA 143 +VL S+E L ++++ A Sbjct: 120 LREVLDGTSLEALRTGALPEPLQQLLTA 147 >gi|78189265|ref|YP_379603.1| hypothetical protein Cag_1300 [Chlorobium chlorochromatii CaD3] gi|78171464|gb|ABB28560.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium chlorochromatii CaD3] Length = 186 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y A + + +++E S+ FL K +Q L KAGI ++V+G Sbjct: 3 QVSRKFEYGLHAITYLATKGQNRVVTVKELSEELGFSQEFLSKAMQSLKKAGITKSVQGL 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL +P +IT+ D+ ATE + +C S + C + +C + + + + Sbjct: 63 RGGFRLIKPITEITVADIAVATEGEPHLVQCNISAE-RCHVYATCQHKAFMNTLQHKIHE 121 Query: 121 VLTQYSIECLVRN 133 +L +I L+ Sbjct: 122 LLATTTIVALLEQ 134 >gi|184199973|ref|YP_001854180.1| Rrf2 family DNA-binding protein [Kocuria rhizophila DC2201] gi|183580203|dbj|BAG28674.1| putative Rrf2 family DNA-binding protein [Kocuria rhizophila DC2201] Length = 176 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +RVL+ + +IAE + K + L G++ + RG Sbjct: 1 MRLTAFSDIALRVLLLMGGLPQGTMLSTQRIAEGVGAPYHHVAKTVARLRGMGLLCSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGV L +++ V++ E + EC A CPL C L L A AF+ Sbjct: 61 RAGGVALTAEGCGVSVGRVLRELEADTAIVECEADEAA-CPLNHGCRLRRALNSAREAFY 119 Query: 120 DVLTQYSIECLVRNRS 135 L ++ LV R Sbjct: 120 RELDGVTVTDLVNPRQ 135 >gi|297162887|gb|ADI12599.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 161 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R + A D + IA A I FL IL L + G+V + RG Sbjct: 1 MQISARADYAVRAALELAAAGPDTSLKAEAIAAAQGIPHKFLEGILGDLRRGGLVTSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPAD+I I DV++ + ++ L + Sbjct: 61 GNGGYRLARPADEIAIADVIRVADGPLVSVRGVRPPQLSYTGPAE-SLLPLWVAVRANVR 119 Query: 120 DVLTQYSIECLV 131 +L + ++ + Sbjct: 120 KILGEVTLADVA 131 >gi|197119432|ref|YP_002139859.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088792|gb|ACH40063.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 162 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 17/143 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y + L Y + I +AE ++ +L KI L K GIV +V G Sbjct: 1 MQFSVGVEYALHSLFYLVNVPEGKTVGIRHLAELHGSTDSYLSKIFAKLRKTGIVRSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------CPLVGSCGL 107 +GG L R + I+ D+++A E + +C K + CP C + Sbjct: 61 VKGGYELARLPEAISFWDIIEAVEGPSYFFQCNEMRKKNIFVSDPSIFTDRCP----CLI 116 Query: 108 TSVLRKALNAFFDVLTQYSIECL 130 V++ A N F + L S+ L Sbjct: 117 KVVIQDAENVFRNELRNKSLRWL 139 >gi|91205764|ref|YP_538119.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii RML369-C] gi|91069308|gb|ABE05030.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii RML369-C] Length = 139 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + D P +++I+ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 GG L ++I I +++ A E+F + C+ +C C + + Sbjct: 61 PNGGYILIGKLEEIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKCNSHKLWKGLGKHI 120 Query: 119 FDVLTQYSIEC 129 D S++ Sbjct: 121 RDYFENISVKD 131 >gi|296116552|ref|ZP_06835162.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976764|gb|EFG83532.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 152 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY + L+ + ++ + I E + K+L+ L GIV + RG R Sbjct: 3 KLSKLTDYAVVALVRLG-QKEEVTTSPVLSRSTGIPEPTIAKVLKVLAAQGIVISQRGAR 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RP QI++ V++A + + C + C CGL A D Sbjct: 62 GGYRLARPLAQISVAAVIQAIDGPISLTTCVDGGE--CDARSKCGLVGQWDAVNGAILDA 119 Query: 122 LTQYSIECL 130 L+ S+ + Sbjct: 120 LSSISLSDM 128 >gi|256783279|ref|ZP_05521710.1| hypothetical protein SlivT_02175 [Streptomyces lividans TK24] Length = 146 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 4/136 (2%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +TK TD +R +M A+ D P ++AE + K + L G+VE RGR Sbjct: 1 MTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+ L + ++ +V+ E V +C CPL G+C L LR A AF+ Sbjct: 61 GGGLTLTDLGRRASVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAFYA 118 Query: 121 VLTQYSIECLVRNRSS 136 L ++ LV + Sbjct: 119 ALDPLTVTDLVAAPTG 134 >gi|257056284|ref|YP_003134116.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586156|gb|ACU97289.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 149 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L K TD +R++M A+ + + ++A+A + K++ L + G+VE R Sbjct: 1 MRLMKGTDLALRIVMRLAVVGERESAPTTREVADAVSVPYSHAAKVVTRLQRLGVVEARR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ L ++ +V+ E V C CPL +C L + LR A +AF Sbjct: 61 GRSGGLALTAAGRAASLGRLVRELEGVGDVVGC--EDDPPCPLRTACRLRAALRSAQDAF 118 Query: 119 FDVLTQYSIECLVRNRSS 136 + L +IE LV + Sbjct: 119 YAALDPLTIEDLVAEPAG 136 >gi|254459475|ref|ZP_05072891.1| HTH-type transcriptional regulator NsrR [Rhodobacterales bacterium HTCC2083] gi|206676064|gb|EDZ40551.1| HTH-type transcriptional regulator NsrR [Rhodobacteraceae bacterium HTCC2083] Length = 115 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 56/96 (58%) Query: 42 FKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101 KI+ L +AG + T RGR GG RL +PA++I + DVV+ TE + ECF CPL Sbjct: 1 MKIVHELGQAGYIVTQRGRGGGFRLAKPAEEIVVGDVVRLTEGPLNLVECFNLENNTCPL 60 Query: 102 VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 +G C L+ L++A AF VL ++ + NRS + Sbjct: 61 IGICKLSRSLQEATRAFMAVLDDLTLADIASNRSVL 96 >gi|327402275|ref|YP_004343113.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317783|gb|AEA42275.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis DSM 16823] Length = 139 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y + L Y A + P I +I+E I FL IL L K GI+ + G+ Sbjct: 2 LSKKTKYALHALTYLAKKEANEPTLILEISENGHIPRKFLESILLDLKKQGILNSKMGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I I +++ + C + +C +CGL V N Sbjct: 62 GGYFLRQTPTEIQISTIIRLFNGPIALLPCVSLNYYQRCDECTDEKTCGLNKVFIDVRNE 121 Query: 118 FFDVLTQYSIECLVRNR 134 +L SI+ +V Sbjct: 122 TLRILENKSIQDIVDQE 138 >gi|256372224|ref|YP_003110048.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256008808|gb|ACU54375.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium ferrooxidans DSM 10331] Length = 273 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 2/129 (1%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R DY +R +Y A ++ + +I A I F +IL L +AGI+ GR Sbjct: 5 LSRRGDYAVRAALYLARQESNEAVGVREITAAMAIPPSFAGQILADLTRAGILGARPGRG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L IT+L +V+A E + C C C L + + A+ A D Sbjct: 65 GGYWLQHDPKDITLLTIVEAAEGTLRAERCALGDGP-CRWDSVCPLHTFWQGAVRAVRDQ 123 Query: 122 LTQYSIECL 130 L ++ + Sbjct: 124 LATVTLADV 132 >gi|126650609|ref|ZP_01722832.1| transcriptional regulator [Bacillus sp. B14905] gi|126592765|gb|EAZ86764.1| transcriptional regulator [Bacillus sp. B14905] Length = 140 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + +++ + +A+ +S +L KIL LVKAG++E+ G Sbjct: 2 MKYSKATNYALHTMVFLTNTPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIESNPG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R+ + +++ LDV+ A E + C + H+ G C + V+ A N Sbjct: 62 VNGGYRISKRPQEVSFLDVIYAIEGQTSLFSCSSDHEDSFHNEG-CLIEQVMVDAENNMK 120 Query: 120 DVLTQ 124 + L++ Sbjct: 121 EELSK 125 >gi|302539851|ref|ZP_07292193.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653] gi|302457469|gb|EFL20562.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653] Length = 152 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DY +R + A+ +D + IA + + FL IL L + G+V + RG Sbjct: 1 MRISAKADYAVRAALELAVAADDTSLKAEVIAASQGVPHKFLEGILGDLRRGGLVVSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG RL RPAD+ITI DV++ + ++ + L + Sbjct: 61 GKGGYRLARPADEITIADVIRVVDGPLVSVRGVRPPELSY-RGPAESLLPLWIAVRANVR 119 Query: 120 DVLTQYSIECLVR 132 +L + ++ + Sbjct: 120 KILGEVTLAEVAA 132 >gi|89890072|ref|ZP_01201583.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium BBFL7] gi|89518345|gb|EAS21001.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium BBFL7] Length = 138 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T YGI+ L Y A + N+ P IS IA+A I FL IL L K I+ + +G+ Sbjct: 4 LSRKTKYGIKALTYLARLDNNEPVSISTIADAEQIPHKFLEAILLELRKNSILGSRKGKG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + + + E + C F DC +C + ++ + + Sbjct: 64 GGYYLMQSPETVRMSSIHRVLEGPIAMLPCVSLNFYEKCEDCIDEETCAVNKLMIQVRDN 123 Query: 118 FFDVLTQYSIECLVR 132 +L +++ L++ Sbjct: 124 TLAILENQTLKDLIK 138 >gi|323694029|ref|ZP_08108212.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum WAL-14673] gi|323501915|gb|EGB17794.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum WAL-14673] Length = 165 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R ++Y A + + ++I EA ++++F+ K+L+ L AG+V + G Sbjct: 10 MQLTMTTDYALRCMLYLAG-KEGLSSSTEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 68 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL + A +I +LD++ E++ + C + C +C + + Sbjct: 69 TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 127 Query: 121 VLTQYSIECLVR 132 + +++ ++ Sbjct: 128 FFGRDTLQDVID 139 >gi|254821269|ref|ZP_05226270.1| hypothetical protein MintA_15127 [Mycobacterium intracellulare ATCC 13950] Length = 161 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMIQLATVSDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L R I+I DV++ + + + LT V R + Sbjct: 61 REGGYELARSGSDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL Q ++ + Sbjct: 120 SVLEQTTLADVA 131 >gi|153209325|ref|ZP_01947344.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat Q177'] gi|212218766|ref|YP_002305553.1| cysteine desulfurase activator complex subunit SufB [Coxiella burnetii CbuK_Q154] gi|120575396|gb|EAX32020.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat Q177'] gi|212013028|gb|ACJ20408.1| ABC transporter-associated protein [Coxiella burnetii CbuK_Q154] Length = 631 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ DY V+ A +QIA +S + K+L+ L + +V + RG Sbjct: 3 KISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGVN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R I+I D++ A + + EC + C CG+ + FDV Sbjct: 63 GGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFDV 121 Query: 122 LTQYSIECLVRNRSSIKKI 140 L ++ + + +K+I Sbjct: 122 LDSLNLADM--QKPLLKRI 138 >gi|291551330|emb|CBL27592.1| rrf2 family protein (putative transcriptional regulator) [Ruminococcus torques L2-14] Length = 572 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T TDY IR++ Y A + S++++ + ++ KI + L +AGI++ G Sbjct: 1 MQITSTTDYAIRIVCYLAAQS-QMISTSELSQELSVPSSYIPKITKKLKQAGIIKACEGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118 +GG ++ + + I++ DV+ TE + ++ C + C C + +L N + Sbjct: 60 KGGYQIAKQPENISLRDVISCTESTMAISRCL-EKEGGCSKNYIACCKVHQILMDLQNIY 118 Query: 119 FDVLTQYSIECLVR 132 + L I ++R Sbjct: 119 NNRLESVKISDIIR 132 >gi|157363012|ref|YP_001469779.1| BadM/Rrf2 family transcriptional regulator [Thermotoga lettingae TMO] gi|157313616|gb|ABV32715.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga lettingae TMO] Length = 134 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T +++Y ++L+ A + P +S I + + F KI+ L +AGI+E+ RG Sbjct: 1 MGITIKSEYAFKILLQIANCQANEPVSLSLILTDVNVPKEFAEKIMVSLKEAGIIESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAF 118 R+GG RL + ADQIT L++V+A ++ + +C C SC + + + Sbjct: 61 RKGGYRLTKSADQITALEIVRAVDDPDKLIKCTMDENC-CSDPTSCTIRLKIWDNLKKSV 119 Query: 119 FDVLTQYSIECL 130 D L+ + L Sbjct: 120 EDTLSSIKLSDL 131 >gi|194333947|ref|YP_002015807.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311765|gb|ACF46160.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris aestuarii DSM 271] Length = 169 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 2/141 (1%) Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L T+ TDY +R L+ A H D IAE I FL +LQ + + G++ + G Sbjct: 2 MQLLTQHTDYALRALLMLADHPDSYLSARHIAEKQEIPYQFLRGLLQEMPREGLICSHEG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGV L R I++ +V++ + ++EC ++ C C L + + + Sbjct: 62 AHGGVGLNRDPGSISVRNVIELFQGKVELSECMFRKQL-CSNRSRCVLRHQIMRIESVVA 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + +I L+ + ++ ++ Sbjct: 121 REFDRITIGSLLNDLHAVDRM 141 >gi|86157269|ref|YP_464054.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773780|gb|ABC80617.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter dehalogenans 2CP-C] Length = 157 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 2/140 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY I +L A + +A+ + + K+ + L KAG+V + RGR Sbjct: 3 RLSKLTDYAIVILANLARAGEGTLTAQDLADRSKVPLPTVSKLCKELSKAGLVLSHRGRH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119 GG L R AD I+I ++V+A E + C C L +C + A Sbjct: 63 GGYGLARSADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L + +V S+ K Sbjct: 123 GALRGLPLSSIVLQHSNDPK 142 >gi|227818808|ref|YP_002822779.1| transcriptional regulator [Sinorhizobium fredii NGR234] gi|36959063|gb|AAQ87488.1| RRF2 family protein [Sinorhizobium fredii NGR234] gi|227337807|gb|ACP22026.1| predicted transcriptional regulator [Sinorhizobium fredii NGR234] Length = 179 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Query: 2 HLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 H++ +Y + L+Y A P +AE + F+ K+ L K+GIV G Sbjct: 3 HVSAGVEYALHCLLYLIDAEELGQPASARDLAELQKVPAEFVAKLFTKLQKSGIVVAREG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110 GG L RPA IT LDV++A + + EC F + G C + +V Sbjct: 63 IGGGFALARPATDITALDVIEAVDGRKALFECKEIRAQCALFGDRTPVWAMDGVCSIHAV 122 Query: 111 LRKALNAFFDVLTQYSIECLV 131 + +A +VL +++ + Sbjct: 123 MIEAEKRTREVLAGHTLASIA 143 >gi|116748731|ref|YP_845418.1| BadM/Rrf2 family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697795|gb|ABK16983.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobacter fumaroxidans MPOB] Length = 133 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R++Y + L+Y A H + IA A I FL +IL L A + + +G Sbjct: 1 MRLTCRSEYALLALVYLARHQGETFIPVPAIAAAQGIPPKFLEQILLSLRLAKYLHSSKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118 + GG RL +PAD IT+ ++++ + + E + + P+ L ++ ++ + Sbjct: 61 KNGGFRLAKPADTITLAEIIRLFDGALAPTESASKYFYEPTPIEKEGKLLALFKEVRDYL 120 Query: 119 FDVLTQYSIECLV 131 D + + +I + Sbjct: 121 SDKMERTTIADVA 133 >gi|226361387|ref|YP_002779165.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226239872|dbj|BAH50220.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 157 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+RV+M A+ D IAE +S K++ L + GIV+ RG Sbjct: 1 MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYTHAAKVITRLGELGIVDARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ + ++ + + E V +C CPL +C L S LR+A +AFF Sbjct: 61 RAGGLAITELGRTASVGWLARRLEGDAEVVDC--DGAQPCPLRSNCLLRSALRRAQDAFF 118 Query: 120 DVLTQYSIECLVRNRSS 136 L ++E L R + Sbjct: 119 TSLDALTVEDLTRTPTG 135 >gi|319649301|ref|ZP_08003459.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317398935|gb|EFV79615.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 138 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +K T+Y + ++Y + + Q+A+ +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSKATNYALHTMVYLTLTPKGKSVGVEQLAKIQNLSPTYLSKILTKLVKAGLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + + + LDV+ A E + C H C + V+ +A Sbjct: 61 VKGGYSIVSHSRKTSFLDVIHAIEGHTTLFHCSLEHDD--LQNEDCLIEKVMFEAEKKMK 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L I + + S KK Sbjct: 119 DELNTKYISDIAKEIDSTKK 138 >gi|260770286|ref|ZP_05879219.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2 family [Vibrio furnissii CIP 102972] gi|260615624|gb|EEX40810.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2 family [Vibrio furnissii CIP 102972] Length = 172 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI L+ + P + + A + +L KI KAG+VE+ GR+ Sbjct: 5 SSGVEYGIHCLVNMVDEDGEPREMSVREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRK 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG +L + +I++LD+ A + + +C F G CG+ +V+R Sbjct: 65 GGYKLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVPQWACEGMCGIHAVMR 124 Query: 113 KALNAFFDVLTQYSIECLVRN 133 KA N VL + SI L + Sbjct: 125 KAQNQMQQVLAEQSILMLSKQ 145 >gi|315498886|ref|YP_004087690.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis excentricus CB 48] gi|315416898|gb|ADU13539.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis excentricus CB 48] Length = 138 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R Y IR + A I + ++AE FL IL L + G + + RGR Sbjct: 2 LSQRAKYAIRAMQEMARIPQGQTVQAGELAERIKAPLHFLEGILLELRREGFLMSKRGRS 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L RP+D I++ D+++ + + C + DCP C L VL A +A Sbjct: 62 GGYMLARPSDMISMADLIRLIDGPLALTPCASRTAYARCEDCPTPDDCQLRLVLLAARDA 121 Query: 118 FFDVLTQYSIEC 129 VL ++ Sbjct: 122 MARVLESSTLAE 133 >gi|225849877|ref|YP_002730111.1| Rrf2 family protein [Persephonella marina EX-H1] gi|225646286|gb|ACO04472.1| Rrf2 family protein [Persephonella marina EX-H1] Length = 142 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Query: 10 GIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 IR ++Y A + D + I +IAE +S FL K LQ LVK G++E+ RG GGVRL Sbjct: 9 SIRAMIYIAKYGDRNSFLSIHKIAEDLDLSFYFLSKNLQKLVKVGLLESYRGPNGGVRLA 68 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 +P DQI +LD++ A + + F +C C C + + N +++ ++ Sbjct: 69 KPPDQIKLLDIIDAIDGTEFFNKCILGFDT-CSDENPCVIHHKWAEKRNEIYEMFFGTTL 127 Query: 128 ECLVRN 133 V + Sbjct: 128 SEAVED 133 >gi|222100083|ref|YP_002534651.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] gi|221572474|gb|ACM23286.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana DSM 4359] Length = 143 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K Y +R+LM ++ N P S++AE I+ F K+L L ++G+V +++G+ GG Sbjct: 10 KHVRYALRLLMRLSLEN-RPMSSSELAEKEHITRSFTLKVLHYLKRSGLVSSIKGKNGGF 68 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 L R AD+I+ LD+++A E+ + +C C C + ++ + Sbjct: 69 VLARSADEISFLDIIRAFEKDLVIVDC----SNRCENYKHCRAKYFWSWLSDHLKEMFSS 124 Query: 125 YSIECLV 131 +++ + Sbjct: 125 ITLKDIA 131 >gi|298241400|ref|ZP_06965207.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297554454|gb|EFH88318.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 137 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ T+Y + ++Y A+ + Q+AE +S +L KIL LVKAG++E+ G Sbjct: 1 MKYSQATNYALHTMLYLVALPLGKTVGVQQLAELQGLSPTYLSKILTKLVKAGMIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R ++ L+V+ A E + + C C + V+ A Sbjct: 61 INGGYKLTRNKADLSFLEVIHAIEGTASLFHCDDGKDHQ-----GCLIQGVMTHAEQQME 115 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L + + LV + + Sbjct: 116 AYLKERKLVELVGQVGDVNAL 136 >gi|117929268|ref|YP_873819.1| BadM/Rrf2 family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649731|gb|ABK53833.1| transcriptional regulator, BadM/Rrf2 family [Acidothermus cellulolyticus 11B] Length = 156 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%) Query: 1 MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 MH++ +TDY +R ++ A D + +IA+ + FL IL L +A +VE+ Sbjct: 1 MHISAKTDYAMRAMLVLAHAARERADAWVKAEEIADEQRLPRKFLEAILADLRRARLVES 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 +RG GG RL +PA I + DV++A + + + GL V Sbjct: 61 LRGAEGGYRLAKPASAIYVADVMRAVDGPLAEVRGLRPENVRYEGAAA-GLQDVWVAVRA 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 VL + S+E V NR+ K + + Sbjct: 120 GLRAVLERVSVED-VANRALPKPVQD 144 >gi|150017088|ref|YP_001309342.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903553|gb|ABR34386.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 137 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + ++Y + +S +AE +S +L KIL LVKA ++E+ G Sbjct: 1 MKYTKATNYALHTIVYMMENAKSEKLSVSALAEHFNLSTTYLSKILTQLVKADLIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + I+ +DV+KATE + + C + C + V+ +A N Sbjct: 61 ANGGYVLRKDMRSISFMDVIKATEGTGSLFVCNLNEN------SKCLIEKVMSEAENVLE 114 Query: 120 DVLTQYSIECLVRNRSSIK 138 + L + L +N+S+ K Sbjct: 115 NYLEDKKLYDLTQNKSNCK 133 >gi|146278399|ref|YP_001168558.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556640|gb|ABP71253.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides ATCC 17025] Length = 155 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L+ A+ + ++++++ IS +L ++ L +AG+VE V Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L R A +I + ++++A EE+ A + LT+ L + L+A Sbjct: 61 RGPGGGYKLARDAQEIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120 Query: 118 -FFDVLTQYSIECLVRNR 134 + L Q + +++N Sbjct: 121 HVYVFLHQTRLSDIIKNE 138 >gi|149193764|ref|ZP_01870862.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter mediatlanticus TB-2] gi|149135717|gb|EDM24195.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter mediatlanticus TB-2] Length = 134 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T Y ++ L+ + + D P ++ I+E I + FL K+LQ L + G V + +G Sbjct: 1 MLFTKSTAYALQALIELSKY-DKPIDVTTISEKTAIPKPFLAKLLQNLSRNGFVYSFKGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118 GG L + +I +LD+ K E+ + + K DC C L K + Sbjct: 60 NGGFVLAKNPKEIKLLDIFKNIEDKDTLVFYCSKSKDDCTRNRGSICELQPFFEKMEDEI 119 Query: 119 FDVLTQYSIECLVRN 133 +L +Y++ +RN Sbjct: 120 AIILDKYTLADFIRN 134 >gi|194335942|ref|YP_002017736.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] gi|194308419|gb|ACF43119.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] Length = 137 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y A + ++A+ S+ FL K +Q L +AGI +V+G Sbjct: 3 QVSRKFEYGLHAVTYLATKGVGRVVTVKEMADEIGFSQEFLSKAMQSLKRAGIATSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L + D+IT+ D+ A E + C C + SC L + Sbjct: 63 KGGYTLGKTMDEITVADIAIAIEGKPHLVRC-GVTPDSCEIFSSCHHRGYLNNLQYKIQE 121 Query: 121 VLTQYSIECLVRN 133 +LT ++ L+ Sbjct: 122 LLTATTLHSLLDE 134 >gi|56696894|ref|YP_167256.1| iron-sulfur cluster assembly transcription factor IscR, putative [Ruegeria pomeroyi DSS-3] gi|56678631|gb|AAV95297.1| iron-sulfur cluster assembly transcription factor IscR, putative [Ruegeria pomeroyi DSS-3] Length = 152 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + I+E IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALTDIALQPADKLVTLGDISERQDISLPYLEQLFVKLRRADLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA I +++++ A +E+ A + LT+ L + L+A Sbjct: 61 PGGGYRLARPASDIRVVEILAAVDETVNAMHKGAGASGASSGSRAQSLTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V+N Sbjct: 121 YVFLHQTRLSDVVKN 135 >gi|116622770|ref|YP_824926.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225932|gb|ABJ84641.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 147 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ DY +RV+++ A + S+++ + E FL K+LQ L + G++ + RG Sbjct: 1 MQLTRAADYAVRVMIHLAGLPPGTRVSRSELSTSAECPEQFLCKVLQSLTRVGLIASHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++L+VV+A E + C +H C C V +A A Sbjct: 61 NTGGFELEERHRSASVLEVVQAIEGPIHLNVCL-NHDHGCSRQSWCPAHDVWAEAQRALN 119 Query: 120 DVLTQYSIECLVR 132 +VL +I + Sbjct: 120 EVLGHATISGMAH 132 >gi|262197356|ref|YP_003268565.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Haliangium ochraceum DSM 14365] gi|262080703|gb|ACY16672.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum DSM 14365] Length = 183 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYP---NRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L+ +T YG+R + A H D P + IA I +L +I Q L +AG+VE+ Sbjct: 1 MRLSTKTRYGVRAIFDIAYHGQDQPGVAAQAKDIARREDIPLRYLEQIFQDLKRAGLVES 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFF 87 RG RGG L R A++IT+ DVV+A + Sbjct: 61 KRGPRGGYSLKRSAEEITLGDVVRALQGPIE 91 >gi|330466620|ref|YP_004404363.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809591|gb|AEB43763.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora maris AB-18-032] Length = 151 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R + A I+ + FL +L L +AG+V RG Sbjct: 1 MQISARGDYAVRAALSLAAAYPALLSTQTISAEQDMPRKFLEAVLADLRRAGVVRAQRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP ++T+ V++A E + V L + Sbjct: 61 EGGYALARPPREVTVGAVLRAVEGPLAGVRGLRPEETSYEGVAQ-HLPGFWVAVRASLRR 119 Query: 121 VLTQYSIECLVRNR 134 V+ + S+ ++ R Sbjct: 120 VVDEVSLADVLSGR 133 >gi|145220261|ref|YP_001130970.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206425|gb|ABP37468.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeovibrioides DSM 265] Length = 148 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K++DY +R L+ D IAE + FL +LQ L++ G+VE+ G Sbjct: 1 MKVLNKKSDYAVRALLALGAAGDGFLSARVIAEGQQMPYQFLRGLLQDLIRHGMVESREG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG RL + AD+I +LD+++ + V+EC +I C +C L + + + Sbjct: 61 ARGGFRLVKDADEIALLDIIEIFQGPVQVSECMFRKQI-CVNRSNCVLRHEILRIEHVVQ 119 Query: 120 DVLTQYSIECLVRN-RSSIKKIFNAG 144 +I L+R+ + + + + G Sbjct: 120 REFAGITIGKLMRDLEEAHRPVLDGG 145 >gi|251771117|gb|EES51701.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum ferrodiazotrophum] Length = 141 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 8/131 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R DYGIR ++ A+ + ++IAE I + FL +I+ LVK G VE+ RG + Sbjct: 4 KLSQRVDYGIRAMVEIAVAGAHGMTGAKIAERSKIPKPFLKQIMATLVKNGFVESSRGPQ 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 G RL R I + +V+A E + + + + L ++ K A + Sbjct: 64 GKYRLLRDPADIRLSGIVRALEGTVSLYDPSSPPGP--------ALQTLFDKLSQAVNEE 115 Query: 122 LTQYSIECLVR 132 L + ++ + Sbjct: 116 LEKVTLAECIE 126 >gi|254518634|ref|ZP_05130690.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912383|gb|EEH97584.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 143 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ AI+ D I I+E ISE +L +I L K GI+ +G Sbjct: 1 MKISTKGRYGLRALIDLAINIDSENVSIKTISERQNISERYLEQIFSLLRKGGIIVGRKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + ++TI +++K E + + + + ++ + Sbjct: 61 AQGGYILGKNPSELTISEILKVLEGENIFIDINEEEENELENFIN---KNLWKDINCLIS 117 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + ++E LV K Sbjct: 118 KYFSAITLEDLVNEYKKSKD 137 >gi|114705805|ref|ZP_01438708.1| RrF2 family protein [Fulvimarina pelagi HTCC2506] gi|114538651|gb|EAU41772.1| RrF2 family protein [Fulvimarina pelagi HTCC2506] Length = 138 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++R Y IR + A + P + IAE I + FL IL L +AG + + RG+ G Sbjct: 2 ISQRARYAIRAVFNVADRS-TPVSAAVIAEEEAIPKKFLEAILADLKQAGFLASSRGKNG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118 G L P +I+ D+++ + +A C + DC V +C L + +A Sbjct: 61 GYLLALPPAEISFADILRVIDGPLALAPCASRTAYRRCADCKDVETCETRKALLRVRDAT 120 Query: 119 FDVLTQ 124 ++L Sbjct: 121 AEILEN 126 >gi|297566671|ref|YP_003685643.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851120|gb|ADH64135.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus DSM 9946] Length = 174 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ Y + L Y +++ A + +L +IL LV G+V + +G Sbjct: 1 MRLSATDIYAFKALGYLGTQPPGRYVGSEELSRATGVRRTYLVRILAALVGQGLVASKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLT-SVLRKALNA 117 GG L RP +I + DV++A + C + C G C + K +A Sbjct: 61 AGGGYALPRPPQEINLRDVIRAVDGPIAPLSCVSLKWPKACGEEGRCHARNQIWIKVRDA 120 Query: 118 FFDVLTQYSIECLVRN 133 + L++ S+ L + Sbjct: 121 VLEALSRVSVADLAED 136 >gi|254509696|ref|ZP_05121763.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] gi|221533407|gb|EEE36395.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] Length = 152 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + D + +I+E IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQSSDALVTLGEISERQDISLPYLEQLFVKLRRADLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R +I +++++ A +E+ A + LT+ L ++L+A Sbjct: 61 PGGGYRLARAPSEIRVVEILAAVDETVDAMHKGAGATGASSGSRAQSLTNRLWESLSANV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + ++RN Sbjct: 121 YVFLHQTRLSDVIRN 135 >gi|257065317|ref|YP_003144989.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792970|gb|ACV23640.1| rrf2 family protein, putative transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 136 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R L+ A H D + +AE +S+ +L +I+ L +GI++ RG Sbjct: 1 MLVSTKGRYALRFLLDLAQHKDAGVISLQAVAERQNVSKKYLERIVSLLSPSGILKITRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L R + IT+ +++ TE F +CP A Sbjct: 61 YQGGYQLARDPELITVAEILMLTEGGFSPVPI--DEARECPASA-----FAWESLEGAIT 113 Query: 120 DVLTQYSIECLVRNRSSI 137 L +++ ++ + + Sbjct: 114 RCLENITLQDILDHSDPV 131 >gi|326329630|ref|ZP_08195952.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] gi|325952626|gb|EGD44644.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] Length = 152 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ ++DY +R L+ A D ++ A I FL IL L KAG+V + RG Sbjct: 1 MRVSAKSDYALRALIEMAAREDGKAVSAEELGRAQEIPHGFLQAILADLRKAGVVISQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL R A +++ DV++A + + L V A ++ Sbjct: 61 QSGGWRLARKASDVSVADVIRAVDGPLVSVYGLRPEAVTYNERAD-VLQHVWIAARDSLR 119 Query: 120 DVLTQYSIECLVRNR 134 +V + SI L Sbjct: 120 EVFEKVSIAELAARE 134 >gi|134099519|ref|YP_001105180.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008706|ref|ZP_06566679.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912142|emb|CAM02255.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora erythraea NRRL 2338] Length = 160 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ ++ + L+ A + + P S++A + +L K LQ LV+AG++ + G Sbjct: 1 MRMSEGVEWALHSLLALAWLDDGRPVPTSRLAAGNDLPPAYLNKQLQALVRAGLLVSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112 RGG L RP ++IT++DVV A E C ++ C + + +R Sbjct: 61 ARGGFSLARPPEKITLMDVVAAIEGPEEAFRCTEIRRRGAGANAPRREFESPCAIATAMR 120 Query: 113 KALNAFFDVLTQYSIECL 130 +A A+ L ++ + Sbjct: 121 RAELAWRRELAAQTLADV 138 >gi|319948207|ref|ZP_08022366.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4] gi|319438142|gb|EFV93103.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4] Length = 160 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 10/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51 M +T ++DY +R L+ A D P ++ I FL IL L +A Sbjct: 1 MRVTAKSDYALRALVELAAARSDDPARAPRDNPVSAEELGRLQDIPHGFLQAILSDLRRA 60 Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 G+V + RG+ GG L R AD+IT+ DV++A + + + L V Sbjct: 61 GLVASRRGKTGGWFLGRDADEITVADVMRAVDGPLVSVYDVRPEAVVYNERAA-VLQHVW 119 Query: 112 RKALNAFFDVLTQYSIECLVRNR 134 + A V+ +I L R Sbjct: 120 IASRAALRRVMDAVTIADLAAGR 142 >gi|167586740|ref|ZP_02379128.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia ubonensis Bu] Length = 127 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 17 CAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 A+ + P ++ I++ IS +L ++ L + IVE+VRG GG L R A +T+ Sbjct: 1 MALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTV 60 Query: 76 LDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 D++ A +E +C D G C + + L S++ LV Sbjct: 61 ADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWATLNQKMVEYLDSVSLQDLVDQ 120 Query: 134 RS 135 + Sbjct: 121 QR 122 >gi|320334527|ref|YP_004171238.1| BadM/Rrf2 family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755816|gb|ADV67573.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus maricopensis DSM 21211] Length = 155 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ Y + L Y + D +I+E ++ +L +IL L G+V++ +G Sbjct: 1 MRLSTTDVYAFQALAYLGMQGPDRWIASEEISEQTGVARPYLVRILAALAAKGVVKSKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117 GG L R +++ +VV+A + C + + + CP C + + + +A Sbjct: 61 IGGGYALARKPHLVSLCEVVRAIDGPVAPLSCISLNWREPCPEQDRCHARNTIYTRMRDA 120 Query: 118 FFDVLTQYSIECLVRNRSS 136 VL +S+ LV++R++ Sbjct: 121 MLTVLQDFSVADLVQDRTA 139 >gi|307297855|ref|ZP_07577661.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales bacterium mesG1.Ag.4.2] gi|306917115|gb|EFN47497.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales bacterium mesG1.Ag.4.2] Length = 154 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M T ++ Y +R L A + +I + I FL KI L +AGI++ V Sbjct: 1 MGFTLKSSYALRALYKMAKSTREGKDKLSLVEIVQGNEIPRDFLEKIFGELRQAGIIKAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGR GG L RPA++I + DV+ ++ C + C +C + V K NA Sbjct: 61 RGRYGGYCLARPANEILLRDVILKLDKPMNSYPCLQQNG-KCLEDPNCTVKYVWFKLYNA 119 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 L ++E L+ I + Sbjct: 120 MMRELGSMTLENLLEYGDKIAQ 141 >gi|15892655|ref|NP_360369.1| hypothetical protein RC0732 [Rickettsia conorii str. Malish 7] gi|15619826|gb|AAL03270.1| unknown [Rickettsia conorii str. Malish 7] Length = 139 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + P +++++ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASKSSTEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 +GG L ++I I D++ A E+F + C+ C P C + + Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 D SI+ + + +I Sbjct: 121 RDYFENISIKDALNSNLNI 139 >gi|145222864|ref|YP_001133542.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315443329|ref|YP_004076208.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Mycobacterium sp. Spyr1] gi|145215350|gb|ABP44754.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum PYR-GCK] gi|315261632|gb|ADT98373.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. Spyr1] Length = 158 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATVGDGALVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RPA I+I DV++ + + + LT V R + Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTASLTDVWRALRASMR 119 Query: 120 DVLTQYSIECLVRNR 134 VL Q S+ + Sbjct: 120 SVLEQTSLADVASGE 134 >gi|323485134|ref|ZP_08090486.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum WAL-14163] gi|323401564|gb|EGA93910.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum WAL-14163] Length = 146 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY +R ++Y A + + ++I EA ++++F+ K+L+ L AG+V + G Sbjct: 1 MQLTMTTDYALRCMLYLAG-KEGLSSSTEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL + A +I +LD++ E++ + C + C +C + + Sbjct: 60 TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 118 Query: 121 VLTQYSIECLVR 132 + +++ ++ Sbjct: 119 FFGRDTLQDVID 130 >gi|296282946|ref|ZP_06860944.1| transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 140 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY I ++ A + +A+ I KI+ L AG++ + RG Sbjct: 1 MRLSNLADYAIVIMAATARKCGGGRVSSADLAQETGIPVPTAQKIVSKLSAAGLLRSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG++L RPA I++ D+V+A E + C + DC + C + A Sbjct: 61 AGGGLQLGRPAAAISMADIVEAIEGPIALVSCIDTG--DCAVEHECSVKPHWPVVNAAVR 118 Query: 120 DVLTQYSIECLV 131 L + S+ + Sbjct: 119 GALAEVSLAKIA 130 >gi|239982229|ref|ZP_04704753.1| putative transcriptional regulator [Streptomyces albus J1074] gi|291454076|ref|ZP_06593466.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291357025|gb|EFE83927.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 153 Score = 123 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M LT+ TD +RVLM A+ + D ++A + K + L G+VE Sbjct: 1 MRLTRFTDLALRVLMRLAVEDPKATDDLPTTREVAAGMRVPYTHTAKAVARLQHLGLVEA 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RGR GG+ L ++ +V+ E + V EC CPL +C L LR+A Sbjct: 61 RRGRGGGLTLTAAGRSASVGALVRELEGTGDVVEC--EGAEPCPLRSACRLRGALRQAQE 118 Query: 117 AFFDVLTQYSIECLVRNRSS 136 AFF L ++ L + + Sbjct: 119 AFFAALDPLTVGGLAASPTG 138 >gi|238060186|ref|ZP_04604895.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881997|gb|EEP70825.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 170 Score = 123 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-------NDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R A P QIA+A I FL IL L + GI Sbjct: 15 MRLSARVDYALRATAELAAVADDAGAARSRPVTAEQIAKAQGIPPKFLESILLQLRRGGI 74 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 V RG GG L RPA +I++ +V++ + ++ L V Sbjct: 75 VHAQRGPEGGYWLARPAAEISLAEVIRVIDGPLAHVRGQRPEQLGYQGAAQ-ALQDVWIA 133 Query: 114 ALNAFFDVLTQYSIECLV 131 + ++L ++ + Sbjct: 134 LRASEREILDLVTVADVA 151 >gi|322382961|ref|ZP_08056793.1| transcriptional regulator-like protein of cysteine biosynthesis [Paenibacillus larvae subsp. larvae B-3650] gi|321153081|gb|EFX45539.1| transcriptional regulator-like protein of cysteine biosynthesis [Paenibacillus larvae subsp. larvae B-3650] Length = 126 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +M A + P + IAE +SE +L +++ PL AG+V+++RG GG L RPA+Q Sbjct: 1 MMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQ 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 IT +++ E + F + + ++ VL ++ L+ Sbjct: 61 ITTGQIIRVLEGPISPVD-FEEEDDPAK-------RDLWIRIRDSIAQVLDSTTLASLI 111 >gi|302035787|ref|YP_003796109.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300603851|emb|CBK40183.1| putative HTH-type transcriptional regulator, rrf2 family [Candidatus Nitrospira defluvii] Length = 150 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YGI + A+H + P IA+ I FL ++L + KAG+V + RG Sbjct: 1 MKVSLRATYGIIAAVDLALHHAEQPVCAKSIAKRQAIPARFLEQVLHAMKKAGVVASQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117 +GG L R ++++ D++ A E K L + + A Sbjct: 61 AQGGYVLSRKPSELSVADILDALEGPLLTTNGEGGPKHSSSRGAKQEALLAHIWDRVKRA 120 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 VL++ ++E L + + S+ + Sbjct: 121 ELSVLSEVTVEELAKRQRSLDE 142 >gi|296170194|ref|ZP_06851788.1| Rrf2 family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895146|gb|EFG74863.1| Rrf2 family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 159 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + +Y +R ++ A + + + +A+A I FL IL L +V + RGR Sbjct: 1 MSAKAEYAVRAMVQLATVPHGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP D+I+I DV++ + + + LT V R + V Sbjct: 61 GGYELARPGDEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMRSV 119 Query: 122 LTQYSIECLVRN 133 L + ++ + N Sbjct: 120 LEETTLADVAAN 131 >gi|116626733|ref|YP_828889.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229895|gb|ABJ88604.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 158 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ +YG+R L+ + + I ++++A +S + K+L+ L K G V+ RG Sbjct: 1 MKLSANEEYGLRCLVRIGYAGEGGSLTIPEMSQAEGVSPAYAAKVLRVLRKGGFVKAARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF---FVAECFASHKIDCPLVGSCGLTSVLRKALN 116 + GG L RPA+ I I DV+ E A C C + S+ R Sbjct: 61 KDGGYTLARPAEAIVIGDVMDVLGGRIFESSFCESHAGQAAICTRSIDCSVRSLWRAVQV 120 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 A VL++ ++ L++N + Sbjct: 121 AVDQVLSKATLRDLLQNEEEMN 142 >gi|182414244|ref|YP_001819310.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1] gi|177841458|gb|ACB75710.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae PB90-1] Length = 137 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + DY RVL A + +I +A + FL +IL L G++ + R Sbjct: 1 MKISTKVDYACRVLAELARLHGSGELAQIEHLARVEKLPPNFLAQILSELRNGGLITSRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L RP DQI++ D++ + V E +H+ + V + +F Sbjct: 61 GIQGGYALARPPDQISLYDIITLIDG--AVLELSGNHEG----RSGRRIRQVWLEIRESF 114 Query: 119 FDVLTQYSIECLV 131 + +Y+++ LV Sbjct: 115 EEKTKRYTLDQLV 127 >gi|304440166|ref|ZP_07400057.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371429|gb|EFM25044.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 141 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY R+ Y A ++I+E I E F +IL+ L AGI + RG Sbjct: 1 MRITQEVDYAFRICSYLASKKGEVVAATEISETQAIPERFTLRILRKLNLAGITDAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRKA 114 GG L R + + ++++A + + C S C + C L Sbjct: 61 YGGYYLVRDKYDLNLYEIIEAIDGPIQINRCLRSEDAYCSKNNTQKEREMCKFHQKLSYI 120 Query: 115 LNAFFDVLTQYSIECLVR 132 N+ ++ Q ++ + Sbjct: 121 QNSIINMFKQTTLAEFAK 138 >gi|310780203|ref|YP_003968535.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] gi|309749526|gb|ADO84187.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus DSM 2926] Length = 140 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T + YG+ L+Y A + + + ++AE IS+ +L +I L K+GI+ +V+G +GG Sbjct: 4 TNKGHYGLIALIYMAGNIEKKVSVKEVAEKENISKRYLEQIFSALKKSGILISVKGSQGG 63 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 L R +I + DV++A E+ V + ++ Sbjct: 64 YLLSRSPKEIKVGDVLRALEDIESAV----PKNYRIEDTSYTIQKEVWDTIEKSINQIID 119 Query: 124 QYSIECL 130 SIE L Sbjct: 120 NTSIEDL 126 >gi|157828607|ref|YP_001494849.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933321|ref|YP_001650110.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] gi|229586808|ref|YP_002845309.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia africae ESF-5] gi|238650793|ref|YP_002916648.1| Rrf2 family protein [Rickettsia peacockii str. Rustic] gi|157801088|gb|ABV76341.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908408|gb|ABY72704.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa] gi|228021858|gb|ACP53566.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia africae ESF-5] gi|238624891|gb|ACR47597.1| Rrf2 family protein [Rickettsia peacockii str. Rustic] Length = 139 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + P +++++ IS +L +I L KA +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 +GG L ++I I D++ A E+F + C+ C P C + + Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 D SI+ + + +I Sbjct: 121 RDYFENISIKDALNSNLNI 139 >gi|297562143|ref|YP_003681117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846591|gb|ADH68611.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 143 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT TD +R++M A+ ++ +A + + K + L G+VE RG Sbjct: 1 MRLTAFTDVSLRLVMRLAVADEGELLTTRAVAGMLSVPYTHMAKAVARLSDMGLVEARRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L + ++ +V+ E + +A C CPL +C L LR+A AF+ Sbjct: 61 RNGGLLLTESGRRASVGSIVRELEGAGELAGC--EDDPPCPLRAACRLRGALREAHEAFY 118 Query: 120 DVLTQYSIECLVRNRS 135 L ++E LV + Sbjct: 119 TSLDGVTVESLVSPPA 134 >gi|315181355|gb|ADT88268.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC 11218] Length = 172 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 11/135 (8%) Query: 4 TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI L+ + P + + A + +L KI KAG+VE+ GR+ Sbjct: 5 SSGVEYGIHCLVNMVDEDGEPREMSVREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRK 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG +L + +I++LD+ A + + +C F G CG+ +V+R Sbjct: 65 GGYKLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVHQWACEGMCGIHAVMR 124 Query: 113 KALNAFFDVLTQYSI 127 KA N VL + SI Sbjct: 125 KAQNQMQQVLAEQSI 139 >gi|302868852|ref|YP_003837489.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315504679|ref|YP_004083566.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5] gi|302571711|gb|ADL47913.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca ATCC 27029] gi|315411298|gb|ADU09415.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5] Length = 156 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R A P QIA A I FL IL L + GI Sbjct: 1 MRLSARVDYALRAAAELASVAVGGTTGRSRPVTAEQIARAQDIPPKFLESILLQLRRGGI 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 V RG GG L RPA +I++ +V++ + ++ L V Sbjct: 61 VHAQRGPEGGYWLARPAGEISLAEVIRVIDGPLAHVRGQRPEQLGYQGAAR-ALQDVWIA 119 Query: 114 ALNAFFDVLTQYSIECLVR 132 + ++L +I + Sbjct: 120 LRASEREILELVTIADVAA 138 >gi|119513040|ref|ZP_01632097.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia spumigena CCY9414] gi|119462320|gb|EAW43300.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia spumigena CCY9414] Length = 147 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V ++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPGYGPASVRSIALRQDIPAPYLEKLLIEMRRAGLVTSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L QI+I +++A E+ ++ ++ Sbjct: 61 SIGGYQLALKPAQISIGQILEAVGETITRLPHHTPTPAQ---TEDWVTFTLWQRLNQKLK 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 + L ++ L + S + Sbjct: 118 EALYSITLADLYYDARSWQASLGE 141 >gi|320175095|gb|EFW50208.1| Iron-sulfur cluster regulator IscR [Shigella dysenteriae CDC 74-1112] Length = 152 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 11 IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG GG L + Sbjct: 1 MTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKD 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A I + +V+ A +ES C C ++ R + L ++ Sbjct: 61 ASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGE 118 Query: 130 LVRNRSSI 137 LV N+ + Sbjct: 119 LVNNQEVL 126 >gi|218438424|ref|YP_002376753.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Cyanothece sp. PCC 7424] gi|218171152|gb|ACK69885.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7424] Length = 147 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA + +L K+L + +AG+V+++RG Sbjct: 1 MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L QI++ +++A E+ + D S+ ++ Sbjct: 61 CQGGYQLACEPSQISLGQILEAVGETIEP---LPRYNPDTEQAEDWVTFSLWKRLHLKLK 117 Query: 120 DVLTQYSIECL 130 + L ++ L Sbjct: 118 EALHSITLADL 128 >gi|117926820|ref|YP_867437.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1] gi|117610576|gb|ABK46031.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp. MC-1] Length = 141 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 2/137 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ TDYG V+M+ A + + S+IA+ + E + K+L+ +V+A ++ +VRG + Sbjct: 3 RLSRMTDYGTLVMMHMAKAPERVHSASEIAQHTKLPEPSVRKVLKIMVRAELLCSVRGLK 62 Query: 62 GGVRLCRPADQITILDVVKATEES-FFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119 GG RL + +I++ ++ A E + + +C + D C +C + A Sbjct: 63 GGYRLAKLPLEISLEALITALEGTAVAITDCCDDEQTDHCEQFDACHMRPHWVVINEAIR 122 Query: 120 DVLTQYSIECLVRNRSS 136 L +++ L+ + Sbjct: 123 HALQGVTVQDLLSSADP 139 >gi|292492144|ref|YP_003527583.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291580739|gb|ADE15196.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus Nc4] Length = 136 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 12/143 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R Y I +M A+ + IA+ IS +L +I L G+VE VRG Sbjct: 1 MRLSNRPRYAISAMMNLALAKQPSSVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG L R A++ITI +++ A + + + + Sbjct: 61 PGGGYHLARAAEEITIAEIIAAVDKQPGKLNPLAIANNSVSEAER--------LWNDFSA 112 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 +D L Q ++ L R +++ Sbjct: 113 RLYDFLNQITLADLTRRWPHLRQ 135 >gi|282898861|ref|ZP_06306848.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] gi|281196388|gb|EFA71298.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] Length = 186 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA I +L K+ + AG+V ++RG Sbjct: 40 MKLTTRGHYSVKALLDLSLQPKYGPASVKAIASRQEIPAAYLEKLFIEMRHAGLVHSLRG 99 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R QI+I ++++A E+ S ++ ++ Sbjct: 100 SIGGYKLARHPQQISIGEILEAVGENITDLAVKVSPSTQ---AEDWVTFTLWQRLNQKLR 156 Query: 120 DVLTQYSIECL 130 + L ++ L Sbjct: 157 ESLYSITLADL 167 >gi|291297814|ref|YP_003509092.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567034|gb|ADD39999.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 158 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T ++ + + + D P +++AE +L K LQ L +AGIV + G+ Sbjct: 1 MKMTSGVEWALHACVTLSQAAD-PVPAARLAELHGTPPAYLAKQLQSLARAGIVTSTAGQ 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L RPA ++T+L+VV+A + + C A C SC + + Sbjct: 60 VGGYTLTRPATEVTVLEVVQAVDGTEPAYRCTEIRQRGPLAVPAEKCER--SCAIARAMA 117 Query: 113 KALNAFFDVLTQYSIECLVR 132 +A A+ L++ +I L R Sbjct: 118 EAQEAWSRALSRITIADLAR 137 >gi|331698727|ref|YP_004334966.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953416|gb|AEA27113.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia dioxanivorans CB1190] Length = 160 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ ++ + + P +++A +S +L K LQ L +AG+V +V+G+ Sbjct: 1 MKMSGGVEWALHCCVVL-TGATEPVPAARLAAFHDVSPTYLAKQLQALSRAGLVRSVQGQ 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG +L R IT+LDVV+A + C FA+ C + CG+ SV+ Sbjct: 60 AGGYQLTRDPQAITVLDVVEAVDGRQSAFVCTEIRQRGPFAATPEQCRV--PCGIASVMY 117 Query: 113 KALNAFFDVLTQYSIECLV 131 A A+ D L +I L Sbjct: 118 DADRAWRDSLRATTIADLA 136 >gi|159038921|ref|YP_001538174.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917756|gb|ABV99183.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola CNS-205] Length = 156 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R + A QIA A I FL IL L + G+ Sbjct: 1 MRLSARVDYALRAVAELASVTSGVSTGRGRTVTADQIARAQEIPPKFLESILLQLRRGGV 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 V RG GG L RPA++I++ +V++ + ++ L V Sbjct: 61 VRAQRGPEGGYWLARPAEEISLAEVIRVIDGPLAHVRGQRPEQLGYHGAAR-ALQDVWIA 119 Query: 114 ALNAFFDVLTQYSIECLV 131 + +L ++ + Sbjct: 120 LRASERQILELVTVADVA 137 >gi|326404674|ref|YP_004284756.1| FeS assembly transcriptional regulator [Acidiphilium multivorum AIU301] gi|325051536|dbj|BAJ81874.1| FeS assembly transcriptional regulator [Acidiphilium multivorum AIU301] Length = 152 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ TDY + VL+ A IA I E + K+L+ L ++G+V + RG G Sbjct: 1 MSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGAHG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RL RP I I DV+ A + + C C C + +A D L Sbjct: 60 GYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGSCDSASLCPMAGRWGVVNDAISDAL 119 Query: 123 TQYSIECL 130 S++ + Sbjct: 120 NAISLDDM 127 >gi|326330461|ref|ZP_08196769.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] gi|325951736|gb|EGD43768.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] Length = 151 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 13/154 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ + + + H P ++AE +S+ +L K LQ L +AGIV GR Sbjct: 1 MKLSTGVEWSLHCCVVLS-HAPGPVASGRLAELLGVSKTYLAKHLQALARAGIVRPSEGR 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R D++T+LDVV+A E C A+ C CG+ V+ Sbjct: 60 DGGYELTRAPDEVTVLDVVQAVEGRRPAFRCTEIRQQGLLAAPPERC--RSMCGIAKVMA 117 Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFNAG 144 A A+ L +I L + ++ + G Sbjct: 118 DAEEAWRASLAGVTIGDLSDRFDTGPMRDVLLEG 151 >gi|15964295|ref|NP_384648.1| hypothetical protein SMc02238 [Sinorhizobium meliloti 1021] gi|307307031|ref|ZP_07586770.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|307320111|ref|ZP_07599531.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|15073472|emb|CAC45114.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306894157|gb|EFN24923.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306901971|gb|EFN32570.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 168 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + I + + + + +AE +S +L K LQ + AG++E V G Sbjct: 1 MKLGDGVEQAIHSVTMLSCLQPGSTLSAAALAEFHGVSTSYLLKHLQAMSGAGLLEAVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKA 114 +GG RL R ++IT+LD+V A E C + C C + + +A Sbjct: 61 PKGGYRLARAPEKITLLDIVLAVEGPEPAFRCNEIRLRGPNPYSCKPAAPCTINVAMLRA 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139 A+ L + +I ++ + +I + Sbjct: 121 EQAYRAELRRVTIAAIMADLKAIDR 145 >gi|145219397|ref|YP_001130106.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205561|gb|ABP36604.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeovibrioides DSM 265] Length = 137 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ + Y A+ + ++A S+ FL K +Q L +AGI + +G Sbjct: 3 QVSRKFEYGLHAVAYLAMKGSGEAVTVKEMARDIGFSQEFLAKAMQNLTRAGIASSAQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L R +IT+ D+ A E + C + C + SC + + N+ Sbjct: 63 KGGYMLARLPSEITVADIGLAIEGEPHMVRCIVNAD-SCEIYSSCRMRGYIIGLQNSIQG 121 Query: 121 VLTQYSIECLVRNRS 135 +L ++ L++ Sbjct: 122 LLASTTVATLLQRNE 136 >gi|327405892|ref|YP_004346730.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321400|gb|AEA45892.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis DSM 16823] Length = 151 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 7/144 (4%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + KR+ Y I+ L A + I+ IAE I FL IL L G+V + G Sbjct: 2 IPKRSKYAIQALKCLAKVYRDKKHLSIATIAEEENIPRKFLEAILLQLRNGGMVGSKMGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116 GG L + D+I + +++ T + C F I+CP CGL V+ + Sbjct: 62 NGGYFLVKHPDEIVLSSIIRVTGGPIALLPCVSLNFYEECIECPHEELCGLHDVMLEVRE 121 Query: 117 AFFDVLTQYSIECLV-RNRSSIKK 139 A +L++ S+ L+ R + ++K Sbjct: 122 ASIHILSKTSLADLILREKKLMRK 145 >gi|221639874|ref|YP_002526136.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160655|gb|ACM01635.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter sphaeroides KD131] Length = 155 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ + Y + L+ A+ + ++++++ IS +L ++ L +AG+VE V Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG +L R A+ I + ++++A EE+ A + LT+ L + L+A Sbjct: 61 RGPGGGYKLARAAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120 Query: 118 -FFDVLTQYSIECLVRNR 134 + L Q + +++N Sbjct: 121 HVYVFLHQTRLSDIIKNE 138 >gi|254471392|ref|ZP_05084794.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] gi|211959538|gb|EEA94736.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] Length = 131 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + D RI Q+ + S + K++ L +AGI+ET+RGR GG +L R A I++ DV Sbjct: 1 MQPDVIQRIDQVVQQQGFSRGHVMKLVNQLSRAGILETMRGRGGGFKLGRLAKHISVGDV 60 Query: 79 VKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 V+A E F V EC +I C + SC L ++++A +AF DVL + +IE Sbjct: 61 VRAVENDFAVVECLRQSECGEIHCCFLPSCRLKPLMQRASSAFLDVLDEMTIE 113 >gi|116622995|ref|YP_825151.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226157|gb|ABJ84866.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter usitatus Ellin6076] Length = 158 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ +Y IR ++ A + + IAE I FL KILQ L + G++ + +G Sbjct: 1 MIYSRSAEYAIRAFVHLAQVQEGKYAMVKNIAEQEDIPAHFLAKILQQLARKGLLRSSKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L A +I +LD+V+A + +C AS +C C + + Sbjct: 61 PTGGFALRVDASEIRLLDIVEALDGLAPYQQC-ASGLSECSDDMPCSMHDSWIALRSRIM 119 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 D L + +I L + KK Sbjct: 120 DYLGKNTIADLAKALEQKKKSL 141 >gi|254488419|ref|ZP_05101624.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp. GAI101] gi|214045288|gb|EEB85926.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp. GAI101] Length = 153 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + IAE IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALTDIALQPPGGLVSLGDIAERQSISLPYLEQLFVKLRRAELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA I ++D++ A +E A + LT+ L + L+A Sbjct: 61 PGGGYRLGRPASDIRVVDILSAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + +V N Sbjct: 121 YVFLHQTRLSDVVANE 136 >gi|157964665|ref|YP_001499489.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia massiliae MTU5] gi|157844441|gb|ABV84942.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia massiliae MTU5] Length = 139 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A + P +++++ IS +L +I L A +V+ +RG Sbjct: 1 MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKNADLVKAIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 +GG L ++I I D++ A E+F + C+ C P C + + Sbjct: 61 SKGGYILIGNLEEIKIADIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 D SI+ + + +I Sbjct: 121 RDYFENISIKDALNSNLNI 139 >gi|238019616|ref|ZP_04600042.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748] gi|237863657|gb|EEP64947.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748] Length = 157 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + S +AE I E FL KI++ L+ AGI+++ RG Sbjct: 8 MKLNQATDYAFRMVLHMALLPSGTKLTGSVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 67 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 GG L R +I++LDV++A E ++ C S C +G C + + + Sbjct: 68 VDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--MGHCAINEAMGTIQD 125 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 + L Q + + L + I+ Sbjct: 126 QLINQLEQVNFKTLAQREQLIE 147 >gi|300778846|ref|ZP_07088704.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504356|gb|EFK35496.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 135 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K++ Y + L Y N+ P IS+IAE I FL IL L KA I+++ +G+ Sbjct: 2 LSKKSQYAFKALSYLVEKRNEGPILISEIAEHKKIPLKFLENILLELKKADILDSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG + + + +++ + C F DC CGL VL + +A Sbjct: 62 GGYFFKENPENVKLAKIIRLVNGPIAMLPCVSLNFYEKCEDC-NEDHCGLHDVLIEVRDA 120 Query: 118 FFDVLTQYSIECLVR 132 ++L ++ LV Sbjct: 121 SLNILESKTLMDLVD 135 >gi|183984102|ref|YP_001852393.1| putative transcriptional regulatory protein [Mycobacterium marinum M] gi|183177428|gb|ACC42538.1| conserved hypothetical transcriptional regulatory protein [Mycobacterium marinum M] Length = 161 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATADSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RP I+I DV++ + + + LT V R + Sbjct: 61 RDGGYELARPGTDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL + ++ + Sbjct: 120 SVLEETTLADVA 131 >gi|226324474|ref|ZP_03799992.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758] gi|225206922|gb|EEG89276.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758] Length = 148 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+ +K++ YG+R L+ ++++ + ++ IAE IS +L ++ L KAGI+++V+G Sbjct: 1 MNFSKKSRYGLRALIDLSVYSKESHVALAAIAERNSISPQYLEQVFAALRKAGIIKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L +PA +I++ ++++A E + + E + + V+ + Sbjct: 61 PQGGYLLAKPATKISVAEILRALEGDYLIEEEDVEGAENGRAAAQAVQSEVIERLNRGLQ 120 Query: 120 DVLTQYSIECLVRNRSS 136 D+L + L + Sbjct: 121 DILENLFLSDLEQKYQE 137 >gi|149914909|ref|ZP_01903438.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. AzwK-3b] gi|149811097|gb|EDM70934.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. AzwK-3b] Length = 153 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ A+ + +S+I+ +S +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALVDIALQDGESLVTLSEISRRQDVSLPYLEQLFVKLRRANLVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R A +I ++DV+ A +E+ + A + +T+ L ++L+A Sbjct: 61 PGGGYRLARSASEIRVVDVLAAVDETVNALQKGAGASGAASGSKAQSMTNRLWESLSAQV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V N Sbjct: 121 YVFLHQTRLSDVVSN 135 >gi|260433735|ref|ZP_05787706.1| iron-sulfur cluster assembly transcription factor IscR [Silicibacter lacuscaerulensis ITI-1157] gi|260417563|gb|EEX10822.1| iron-sulfur cluster assembly transcription factor IscR [Silicibacter lacuscaerulensis ITI-1157] Length = 152 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + +I+E IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPADALVTLGEISERQDISLPYLEQLFVKLRRADLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I +++V+ A +E+ A + LT+ L ++L+A Sbjct: 61 PGGGYRLARPASEIRVVEVLAAVDETVDAMHKGAGASGASSGSRAQSLTNRLWESLSAHV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + ++ N Sbjct: 121 YVFLHQTRLSDVIENE 136 >gi|57237713|ref|YP_178961.1| RrF2 family protein, putative [Campylobacter jejuni RM1221] gi|86150257|ref|ZP_01068484.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152104|ref|ZP_01070316.1| rrf2 family protein (putative transcriptional regulator) [Campylobacter jejuni subsp. jejuni 260.94] gi|86153564|ref|ZP_01071768.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597557|ref|ZP_01100791.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|121612186|ref|YP_001000559.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|148926572|ref|ZP_01810254.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp. jejuni CG8486] gi|153952143|ref|YP_001398128.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei 269.97] gi|157415141|ref|YP_001482397.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni 81116] gi|167005492|ref|ZP_02271250.1| hypothetical protein Cjejjejuni_04615 [Campylobacter jejuni subsp. jejuni 81-176] gi|205356370|ref|ZP_03223135.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562504|ref|YP_002344283.1| putative transcriptional regulator [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283954445|ref|ZP_06371965.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni 414] gi|57166517|gb|AAW35296.1| RrF2 family protein, putative [Campylobacter jejuni RM1221] gi|85839373|gb|EAQ56635.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840889|gb|EAQ58139.1| rrf2 family protein (putative transcriptional regulator) [Campylobacter jejuni subsp. jejuni 260.94] gi|85843290|gb|EAQ60501.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249498|gb|EAQ72458.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|88190149|gb|EAQ94124.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112360210|emb|CAL35005.1| putative transcriptional regulator [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845266|gb|EDK22360.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp. jejuni CG8486] gi|152939589|gb|ABS44330.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei 269.97] gi|157386105|gb|ABV52420.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni 81116] gi|205345755|gb|EDZ32393.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp. jejuni CG8421] gi|283794062|gb|EFC32811.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni 414] gi|284926118|gb|ADC28470.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni IA3902] gi|307747784|gb|ADN91054.1| Rrf2 family protein (Putative transcriptional regulator) [Campylobacter jejuni subsp. jejuni M1] gi|315058324|gb|ADT72653.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp. jejuni S3] gi|315926477|gb|EFV05859.1| Rrf2 family protein, putative [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929508|gb|EFV08702.1| Rrf2 family protein (transcriptional regulator) [Campylobacter jejuni subsp. jejuni 305] gi|315932634|gb|EFV11565.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp. jejuni 327] Length = 136 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117 +GG L + Q TI ++V + E + V EC CP +C L +L N Sbjct: 60 KGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGG---TCPNNKEENCTLMPMLVNLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 + L ++E +++N Sbjct: 117 VDEFLDSITLEDIMKNN 133 >gi|238760769|ref|ZP_04621882.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC 35236] gi|238701015|gb|EEP93619.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC 35236] Length = 169 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 4 TKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +YGI L+ +D + ++A+ + +L KI L AG+V + G+ Sbjct: 5 SSGVEYGIHSLVCMVDINGDDREMNVREMADLQGVPYDYLAKIFTRLSHAGLVVSSEGKG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112 GG RL RP+ IT+LDV++A + + +C F G CG+ +V+ Sbjct: 65 GGFRLARPSALITMLDVIQAVDGQKGIFKCKEIRQRLAIFEEKLPAWVCDGPCGIRAVMD 124 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L +++I L R Sbjct: 125 SAQQRMEEELARHTILDLARK 145 >gi|194333510|ref|YP_002015370.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311328|gb|ACF45723.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris aestuarii DSM 271] Length = 137 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 2/136 (1%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ ++Y A +D + ++A S+ F+ K LQ L +AG+ +V+G Sbjct: 3 KVSRKFEYGLHAIIYLAGKSDDEIVTVKEMAAEIGFSQEFMAKALQKLKRAGLALSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG +L +PA +IT+ DV +ATE + C +S + C +V SC + Sbjct: 63 KGGYKLGKPAAEITVADVGRATEGEPHLMRC-SSEEGSCEIVRSCPHRGYMFSLEKRIQG 121 Query: 121 VLTQYSIECLVRNRSS 136 ++ + ++ L++ Sbjct: 122 LMAETTVMALLQRHEG 137 >gi|323440820|gb|EGA98529.1| Rrf2 family protein [Staphylococcus aureus O11] Length = 117 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L PA++I+ D+++ E E S + + +A Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112 Query: 120 DVLTQ 124 DVL Sbjct: 113 DVLDN 117 >gi|118619195|ref|YP_907527.1| putative transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571305|gb|ABL06056.1| conserved hypothetical transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 161 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATTDSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RP I+I DV++ + + + LT V R + Sbjct: 61 RDGGYELARPGTDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL + ++ + Sbjct: 120 SVLEETTLADVA 131 >gi|15608427|ref|NP_215803.1| hypothetical protein Rv1287 [Mycobacterium tuberculosis H37Rv] gi|15840735|ref|NP_335772.1| hypothetical protein MT1325 [Mycobacterium tuberculosis CDC1551] gi|31792479|ref|NP_854972.1| hypothetical protein Mb1318 [Mycobacterium bovis AF2122/97] gi|121637215|ref|YP_977438.1| hypothetical protein BCG_1346 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661074|ref|YP_001282597.1| hypothetical protein MRA_1295 [Mycobacterium tuberculosis H37Ra] gi|148822504|ref|YP_001287258.1| hypothetical protein TBFG_11313 [Mycobacterium tuberculosis F11] gi|167969611|ref|ZP_02551888.1| hypothetical protein MtubH3_16956 [Mycobacterium tuberculosis H37Ra] gi|215403126|ref|ZP_03415307.1| hypothetical protein Mtub0_05401 [Mycobacterium tuberculosis 02_1987] gi|215410923|ref|ZP_03419731.1| hypothetical protein Mtub9_06240 [Mycobacterium tuberculosis 94_M4241A] gi|215426606|ref|ZP_03424525.1| hypothetical protein MtubT9_09527 [Mycobacterium tuberculosis T92] gi|215430171|ref|ZP_03428090.1| hypothetical protein MtubE_05718 [Mycobacterium tuberculosis EAS054] gi|215445463|ref|ZP_03432215.1| hypothetical protein MtubT_05813 [Mycobacterium tuberculosis T85] gi|218752991|ref|ZP_03531787.1| hypothetical protein MtubG1_05905 [Mycobacterium tuberculosis GM 1503] gi|219557185|ref|ZP_03536261.1| hypothetical protein MtubT1_07730 [Mycobacterium tuberculosis T17] gi|224989690|ref|YP_002644377.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo 172] gi|253799668|ref|YP_003032669.1| hypothetical protein TBMG_02694 [Mycobacterium tuberculosis KZN 1435] gi|254231544|ref|ZP_04924871.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254364183|ref|ZP_04980229.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254550293|ref|ZP_05140740.1| hypothetical protein Mtube_07514 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186223|ref|ZP_05763697.1| hypothetical protein MtubCP_09373 [Mycobacterium tuberculosis CPHL_A] gi|260200337|ref|ZP_05767828.1| hypothetical protein MtubT4_09463 [Mycobacterium tuberculosis T46] gi|260204542|ref|ZP_05772033.1| hypothetical protein MtubK8_09578 [Mycobacterium tuberculosis K85] gi|289442725|ref|ZP_06432469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289446881|ref|ZP_06436625.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A] gi|289554924|ref|ZP_06444134.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289569296|ref|ZP_06449523.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289573949|ref|ZP_06454176.1| Rrf2 family protein [Mycobacterium tuberculosis K85] gi|289745032|ref|ZP_06504410.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289749839|ref|ZP_06509217.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289753363|ref|ZP_06512741.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289757386|ref|ZP_06516764.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289761441|ref|ZP_06520819.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994844|ref|ZP_06800535.1| hypothetical protein Mtub2_10117 [Mycobacterium tuberculosis 210] gi|297633836|ref|ZP_06951616.1| hypothetical protein MtubK4_06924 [Mycobacterium tuberculosis KZN 4207] gi|297730823|ref|ZP_06959941.1| hypothetical protein MtubKR_07014 [Mycobacterium tuberculosis KZN R506] gi|298524790|ref|ZP_07012199.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775455|ref|ZP_07413792.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis SUMu001] gi|306781632|ref|ZP_07419969.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis SUMu002] gi|306784008|ref|ZP_07422330.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis SUMu003] gi|306807174|ref|ZP_07443842.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis SUMu007] gi|306967373|ref|ZP_07480034.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis SUMu009] gi|307079278|ref|ZP_07488448.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis SUMu011] gi|307083848|ref|ZP_07492961.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis SUMu012] gi|313658155|ref|ZP_07815035.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|54040094|sp|P67160|Y1318_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb1318 gi|54042641|sp|P67159|Y1287_MYCTU RecName: Full=Putative HTH-type transcriptional regulator Rv1287/MT1325 gi|1322411|emb|CAA97753.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880926|gb|AAK45586.1| Rrf2 family protein [Mycobacterium tuberculosis CDC1551] gi|31618068|emb|CAD94179.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121492862|emb|CAL71333.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600603|gb|EAY59613.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134149697|gb|EBA41742.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148505226|gb|ABQ73035.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148721031|gb|ABR05656.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224772803|dbj|BAH25609.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo 172] gi|253321171|gb|ACT25774.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289415644|gb|EFD12884.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289419839|gb|EFD17040.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A] gi|289439556|gb|EFD22049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289538380|gb|EFD42958.1| Rrf2 family protein [Mycobacterium tuberculosis K85] gi|289543050|gb|EFD46698.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685560|gb|EFD53048.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289690426|gb|EFD57855.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289693950|gb|EFD61379.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289708947|gb|EFD72963.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289712950|gb|EFD76962.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298494584|gb|EFI29878.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216075|gb|EFO75474.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis SUMu001] gi|308325593|gb|EFP14444.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis SUMu002] gi|308331243|gb|EFP20094.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis SUMu003] gi|308346415|gb|EFP35266.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis SUMu007] gi|308354987|gb|EFP43838.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis SUMu009] gi|308362898|gb|EFP51749.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis SUMu011] gi|308366483|gb|EFP55334.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis SUMu012] gi|323720243|gb|EGB29342.1| hypothetical protein TMMG_01982 [Mycobacterium tuberculosis CDC1551A] gi|326902908|gb|EGE49841.1| hypothetical protein TBPG_00763 [Mycobacterium tuberculosis W-148] gi|328459414|gb|AEB04837.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 161 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + + +A A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RP +I+I DV++ + + + LT V R + Sbjct: 61 REGGYELARPGTEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLV 131 VL + ++ + Sbjct: 120 SVLEETTLADVA 131 >gi|257063216|ref|YP_003142888.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] gi|256790869|gb|ACV21539.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] Length = 136 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 8/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R+ Y + V++ A + + +IA+ ISE +L IL+ LVK G + VRG Sbjct: 1 MLFSTRSQYALSVMVDLAERQAEGYTPLKEIADRQGISEKYLESILKVLVKNGFLIGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L R D T+ DV++ TE+S + + ++ R +A Sbjct: 61 KGGGYKLTRNPDLYTVGDVLRLTEDSLTQTVEVSQSTNE-------KTAAMWRGLGDAIN 113 Query: 120 DVLTQYSIECLV 131 L ++ L Sbjct: 114 GYLDSVTVADLA 125 >gi|86141875|ref|ZP_01060399.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217] gi|85831438|gb|EAQ49894.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217] Length = 137 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A H P +I IA++ IS+ FL I+ L KAG + + +G+ Sbjct: 2 LSKKTKYGLKALAYVAKHKGEDPVQIGAIAKSENISQKFLESIMLTLRKAGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L R ++I +++V++ E + C F DCP +C + S++ + ++ Sbjct: 62 GGYYLRRQPEEIKMVEVMRILEGPVSMVPCVSLNFYEKCDDCPDETTCSVHSLMVQLRDS 121 Query: 118 FFDVLTQYSIECLVRN 133 VL + ++ L+ Sbjct: 122 NLAVLNKNTLADLIAE 137 >gi|307824109|ref|ZP_07654336.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] gi|307734893|gb|EFO05743.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter tundripaludum SV96] Length = 149 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY +L + A +I+ I+ + KIL+ LV A ++ + RG + Sbjct: 3 RLSKLTDYATVILSFMAREKAQVRAAMEISTVTGIALPTVSKILKLLVNADVLISTRGAK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R ++I++ V+ A E + EC SH+ C C + + Sbjct: 63 GGYVLARMPEEISVAAVISALEGPIALTECSISHQG-CEQASGCDILGNWSLINQTIHNA 121 Query: 122 LTQYSIECLVR 132 L ++ L+R Sbjct: 122 LESVTLADLIR 132 >gi|239916899|ref|YP_002956457.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414646|ref|ZP_06246388.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239838106|gb|ACS29903.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 157 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD +RVLM A QIA+ + + K + L + G +E +RGR Sbjct: 1 MKLSAYTDVCLRVLMTLAAAEGERVTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + ++V+A V +C + CP C L L +A AF Sbjct: 61 NGGATIAEAGLDQRVGELVRALSSRDEVIDCAGHETGVPCPFAADCRLREALARAREAFM 120 Query: 120 DVLTQYSIECLVR 132 L ++ LVR Sbjct: 121 AELDLLTVRDLVR 133 >gi|325962157|ref|YP_004240063.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Arthrobacter phenanthrenivorans Sphe3] gi|323468244|gb|ADX71929.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter phenanthrenivorans Sphe3] Length = 149 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R LM A + IA++ + K + L G+++ VRG Sbjct: 1 MKINAFADVSLRALMVLAAAPEGALLTTQNIADSVGTPYNHVSKAMAKLRSLGLIDVVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L T+ V++ + A+C A +CPL+ C L S L +A AF+ Sbjct: 61 RTGGSSLSHAGRYATVGQVLRQLDTRTDAADCVAPGG-NCPLINECKLRSALARAREAFY 119 Query: 120 DVLTQYSIECL 130 L I L Sbjct: 120 RELDSVVIADL 130 >gi|300934634|ref|ZP_07149890.1| Rrf2 family transcriptional regulator [Corynebacterium resistens DSM 45100] Length = 162 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT D G+R +M + I+ +A+A S+ L +++ LV+ +V +VRG Sbjct: 1 MRLTTFADLGLRSMMILGDLPEGERLTIADLAKATNASDNHLARVIAKLVEMKLVVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118 R GG L A ++ +++ E S V +C + CPL C L L A AF Sbjct: 61 RNGGAYLSDTARGASVGKILRQIEGSSEVVDCAGTR--PCPLAARDCALRHRLADAQEAF 118 Query: 119 FDVLTQYSIECLVR 132 F L +I L+ Sbjct: 119 FATLDDDTIGDLIA 132 >gi|290968345|ref|ZP_06559886.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781620|gb|EFD94207.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 153 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R+++Y A + + +A+ I E FL KI++ L AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLYLASFPEGTKVTGAALADKQNIPERFLLKIMRSLTAAGIMKSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117 GG L R A +IT+ D+++A E + C C G C + + Sbjct: 61 VEGGFSLNRSAKEITLFDIIEAVEGQTELQRCLHDMG-SCTRSCSGMCSIYTAFADIQRD 119 Query: 118 FFDVLTQYSIECLVRNRSS 136 L + L + Sbjct: 120 LAMKLKSINFYDLAAQEAK 138 >gi|254411526|ref|ZP_05025303.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes PCC 7420] gi|196182027|gb|EDX77014.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes PCC 7420] Length = 145 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +T+Y + L+ H P +I QIA I + +L ++L L + +V + R Sbjct: 1 MELSCKTEYTLLALLELTGHYNQGEPLQIRQIAAQQNIPDRYLEQLLATLRRGNLVRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R +IT+LD++ + S + + + S + ++ + Sbjct: 61 GAKGGYILAREPWRITLLDIMNCLDGSTATT---SGSQTNAITEASAIVQETWQEVRDRT 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 D+L Y+++ L ++ +++ Sbjct: 118 NDILRDYTLQDLWEKLNNRQQL 139 >gi|310658027|ref|YP_003935748.1| transcriptional regulator [Clostridium sticklandii DSM 519] gi|308824805|emb|CBH20843.1| putative transcriptional regulator [Clostridium sticklandii] Length = 128 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 7/133 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + ++ Y + N +S +A IS +L KIL LVKA ++++ G Sbjct: 1 MKYTKATNYALHIMTYFVSQDGKENFSLSPLASHMNISPTYLSKILTQLVKANLIQSSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +P +I+ DV++A E S + C + C + +++A Sbjct: 61 VNGGYSLRKPKSEISFYDVIQAIEGSNALFTCELNEDNLCKIE------LAMQEAEEKMV 114 Query: 120 DVLTQYSIECLVR 132 L + I + Sbjct: 115 TYLKEKLILDVAN 127 >gi|163746291|ref|ZP_02153649.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanibulbus indolifex HEL-45] gi|161380176|gb|EDQ04587.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanibulbus indolifex HEL-45] Length = 153 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + + IAE +S +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPEGSLVSLGDIAERQSVSLPYLEQLFVKLRRAELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA I ++DV+ A +E+ A + LT+ L + L+A Sbjct: 61 PGGGYRLARPATDIRVVDVLAAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWQGLSAHV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + +V N Sbjct: 121 YVFLHQTRLSDVVDNE 136 >gi|89054857|ref|YP_510308.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1] gi|88864406|gb|ABD55283.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1] Length = 152 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + + A+ D +S +++ +S +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVAMADLALQTGDVLTPLSDLSKRQNVSLPYLEQLFVKLRRAELVVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I ++++ +A +E+ A + LT+ L + +A Sbjct: 61 PGGGYRLARPATEIRVVEIFEAVDETVSALHMGAGATGGGSGSRAQSLTNRLWEGFSAHV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + +V+N Sbjct: 121 YVFLHQTRLSDVVKNE 136 >gi|154148684|ref|YP_001406497.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis ATCC BAA-381] gi|153804693|gb|ABS51700.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis ATCC BAA-381] Length = 137 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + +++ A + + P + I+ I + FL KILQ L + GI+++ +G Sbjct: 1 MLFTKASEYALLSMIFIARNKE-PVGVDAISNELKIPKSFLAKILQDLARDGILQSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 +GG L + +I++ ++V++ E+ + EC ++++ CP C + + N Sbjct: 60 KGGFLLAKKPLEISLNEIVQSAEKKQNSIFEC-SNNRASCPSNKGEICEIWHIFSGIQNK 118 Query: 118 FFDVLTQYSIECLVRN 133 +L +++E ++ Sbjct: 119 VDAILDNFTLENFIKE 134 >gi|182416626|ref|ZP_02948040.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum 5521] gi|237668057|ref|ZP_04528041.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379518|gb|EDT77004.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum 5521] gi|237656405|gb|EEP53961.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 142 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 5/140 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+R L+ +++ + + I+E ISE +L +I L K GI++ +G Sbjct: 1 MKISTKGRYGLRALIDICVYSRNEMATVKSISERQNISERYLEQIFSSLRKGGIIKAKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L TI ++ E + + A + + + ++ KA Sbjct: 61 AQGGYFLTDEPKNFTIAKILSVLEGDLLLIDVEAEDNN----MENYLIDNLWSKANEQIR 116 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + ++E L + K Sbjct: 117 NFFCSMTLEDLSEGYKNKGK 136 >gi|329850522|ref|ZP_08265367.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] gi|328840837|gb|EGF90408.1| rrf2 family protein transcriptional regulator family protein [Asticcacaulis biprosthecum C19] Length = 163 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 19/145 (13%) Query: 13 VLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + A++ P +S+I+E IS +L ++ L KAG+V++ RG GG L R A Sbjct: 2 AMTDLALNGQAGRPISLSEISERQQISLSYLEQLFARLRKAGLVKSARGPGGGYSLSRGA 61 Query: 71 DQITILDVVKATEESFFVAEC----------------FASHKIDC-PLVGSCGLTSVLRK 113 +++ + ++V A +E C A+ +I C P C ++ Sbjct: 62 ERLFVSEIVLAVDEPIKATRCELTSNKLGANKRLGKDEAAREIGCMPGGQRCLTHNLWED 121 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIK 138 A D L+Q S+E +VR R+ K Sbjct: 122 LGVAIHDYLSQVSLEDVVRKRTRKK 146 >gi|282896000|ref|ZP_06304031.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] gi|281199110|gb|EFA73980.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] Length = 147 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA I +L K+L + AG+V ++RG Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPGSVKAIASRQEIPAAYLEKLLIEMRHAGLVHSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L + QI+I ++++A E+ S ++ ++ Sbjct: 61 SVGGYKLAKHPQQISIGEILEAVGENIADLAVKVSPSTQ---AEDWVTFTLWQRLNQKLR 117 Query: 120 DVLTQYSIECL 130 + L ++ L Sbjct: 118 EALYSITLADL 128 >gi|291533964|emb|CBL07077.1| rrf2 family protein (putative transcriptional regulator) [Megamonas hypermegale ART12/1] Length = 135 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR+++ A + I+ I + ++ KI + LV A ++E G Sbjct: 1 MQLNITTDYAIRIILALANRDGEVVSSKDISMTMKIPQKYVLKITRSLVAAELIERRSGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 GG L + ++I++L++VK E + +V C C V +C + + N Sbjct: 61 YGGFLLAKKPEEISLLEIVKVMEPTMYVNRCLEEDNY-CSRDAVDNCSIRKIYTNFQNII 119 Query: 119 FDVLTQYSIECLVRNR 134 + ++ +I+ L+ N+ Sbjct: 120 EEKFSEITIKTLIDNK 135 >gi|332665390|ref|YP_004448178.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334204|gb|AEE51305.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter hydrossis DSM 1100] Length = 137 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++ Y I+ L+Y A + + IA I + FL IL + +A +V + +G Sbjct: 2 LSQKAKYAIKALIYLAKQEKGSLTKTADIASKSSIPKKFLELILIDMKRASLVSSKQGIG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + AD+I + D+ + + + + C F DCP +C + L + + Sbjct: 62 GGYYLLKDADEINLADIYRLFDGAIAMLPCASLRFYEPCHDCPDEATCLIRKSLIQVRDQ 121 Query: 118 FFDVLTQYSIECLVRN 133 L + +I+ L + Sbjct: 122 TLHALEKTTIKMLTKE 137 >gi|325168404|ref|YP_004280194.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Agrobacterium sp. H13-3] gi|325168902|ref|YP_004280692.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Agrobacterium sp. H13-3] gi|325064127|gb|ADY67816.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp. H13-3] gi|325064625|gb|ADY68314.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp. H13-3] Length = 162 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + + +AE + + +L K LQ L +AG+V T G Sbjct: 1 MILKSQVEWALHCCAILAGLPDGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113 GG RL R ++T LDVV+A E S C C G C + ++ + Sbjct: 61 PSGGYRLARAPAKLTFLDVVEAVEGSGRTFVCQNIRANNPCRPKGYCESGPCAIARIMWE 120 Query: 114 ALNAFFDVLTQYSIECL 130 A A+ VL + + L Sbjct: 121 ADEAWRTVLRKVTFADL 137 >gi|222055613|ref|YP_002537975.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221564902|gb|ACM20874.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 134 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R++Y + L+Y A ++ + IA A I FL +IL L +A + ++RG Sbjct: 1 MKLTSRSEYALLALIYLARTGSENLVPVQTIATAQGIPPKFLEQILLILKRAKFLRSLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 + GG L RPA QI + +V++ + + E + + + P+ L SV + + Sbjct: 61 QAGGYALARPASQIHLAEVIRLFDGALAPTESVSVYFYESTPIEKEQKLISVFKDIRDYV 120 Query: 119 FDVLTQYSIECL 130 L ++ + Sbjct: 121 AGKLENTTLADV 132 >gi|160894918|ref|ZP_02075692.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50] gi|156863349|gb|EDO56780.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50] Length = 128 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 14 LMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++Y A+++D + +I++ +S+ +L I + L KA ++E G GG RL R ++ Sbjct: 1 MVYLAVNHDGSFIPLKEISQHEELSQKYLESITRMLSKAHLIEAASGHGGGYRLTREPEE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 ++ +++K TE + C + C C + + + + ++ + Sbjct: 61 YSVGEILKLTEGTLAPVSCLKDDSVPCDRSELCYTLPIWQGLADLINNYFDNMTLADVA 119 >gi|189499741|ref|YP_001959211.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] gi|189495182|gb|ACE03730.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] Length = 132 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++++ +YG+ ++Y A + + ++A S+ FL K LQ L KAGIV +V+G Sbjct: 3 QVSRKFEYGLHAVVYLARRESGEVVTVKEMAADIGFSQEFLAKALQQLKKAGIVLSVQGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG RL ++ITI D+ +A E + C +S + C +V SC S + K Sbjct: 63 KGGYRLAGLPEEITISDIARAIEGPPRLMRC-SSERGKCEIVSSCSNRSTMFKLEKNIDA 121 Query: 121 VLTQYSIECLV 131 ++ + L+ Sbjct: 122 LMADTKVSALL 132 >gi|291301253|ref|YP_003512531.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570473|gb|ADD43438.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 149 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R + + ++A A I F IL L + G++E+ RG Sbjct: 1 MRLSARVDYALRAAVELTSVGEEWLSAEKVAGAQKIPGKFCESILLQLRRGGLIESRRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA +I++ DV++ + +D + L V + Sbjct: 61 DGGHRLARPAKEISLADVIRVVDGPLVGVRGQRPEHVDYDGTAA-ALRDVWIALRASERK 119 Query: 121 VLTQYSIECLVRNR--SSIKKI 140 +L ++ + + ++++K+ Sbjct: 120 ILESVTLADVAGGKLPAAVRKL 141 >gi|163736408|ref|ZP_02143827.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] gi|163741057|ref|ZP_02148449.1| iron-sulfur cluster assembly transcription factor IscR, putative [Phaeobacter gallaeciensis 2.10] gi|161385410|gb|EDQ09787.1| iron-sulfur cluster assembly transcription factor IscR, putative [Phaeobacter gallaeciensis 2.10] gi|161390278|gb|EDQ14628.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter gallaeciensis BS107] Length = 152 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + + I++ IS +L ++ L ++G+V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPEGSLVVLGDISKRQDISLPYLEQLFVKLRRSGLVVSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL P I ++DV+ A +E+ A + LT+ L + L+A Sbjct: 61 PGGGYRLAHPPSDIRVVDVLSAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + ++ N Sbjct: 121 YVFLHQTRLSDVIEN 135 >gi|221319934|ref|ZP_03601228.1| hypothetical protein BsubsJ_14863 [Bacillus subtilis subsp. subtilis str. JH642] Length = 111 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG Sbjct: 3 KISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91 GG L D IT D+++ E + +C Sbjct: 63 YGGYVLGSEPDAITAGDIIRVLEGPISLLKC 93 >gi|332765883|gb|EGJ96094.1| iscR transcriptional regulator IscR transcriptional dual regulator [Shigella flexneri 2930-71] Length = 149 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG GG L + A Sbjct: 1 MLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + +V+ A +ES C C ++ R + L ++ LV Sbjct: 61 IAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGELVN 118 Query: 133 NRSSI 137 N+ + Sbjct: 119 NQEVL 123 >gi|260906649|ref|ZP_05914971.1| BadM/Rrf2 family transcriptional regulator [Brevibacterium linens BL2] Length = 152 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T ++DY +R L+ A + + P ++ + I + FL IL L + IV +VRG Sbjct: 1 MRVTTKSDYALRALIEIANVTDGEPISADELGKRQDIPKGFLQAILADLRRVEIVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG RL + A T+ DV++A + ++ L V A A Sbjct: 61 KSGGWRLTKSASATTVADVIRAVDGPLVSIYGQRPEVVEYDDAAE-SLQQVWIAARFALR 119 Query: 120 DVLTQYSIECLVRN 133 DVL Q +IE L Sbjct: 120 DVLEQVTIEQLAAK 133 >gi|150019861|ref|YP_001312115.1| BadM/Rrf2 family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906326|gb|ABR37159.1| transcriptional regulator, BadM/Rrf2 family [Clostridium beijerinckii NCIMB 8052] Length = 137 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M++ + +DY R+++ + D ++E I FL K+ + L +AGI+++ RG Sbjct: 1 MNINQESDYAFRIILMLSKEGLDNKLDAKSLSEKGNIPLRFLLKLTRKLTQAGILKSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 GG + R IT+ DVV+A + V C K C G C + L N Sbjct: 61 VNGGYAITREPKDITLKDVVEAIQGPIIVTRCVYDGKA-CSANKAGHCSIHKALYNIQNT 119 Query: 118 FFDVLTQYSIECL 130 + L + + + L Sbjct: 120 MINELEKVNFDKL 132 >gi|218441057|ref|YP_002379386.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Cyanothece sp. PCC 7424] gi|218173785|gb|ACK72518.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7424] Length = 151 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 7/136 (5%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L + +Y + L+ A + +P +++I I E +L +IL L + G++++ RG Sbjct: 11 LPSKVEYALLALLEMASQSHLKHPLTVNEITAKQPIPERYLEQILATLRRGGLLKSQRGS 70 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L R IT+L++V E + V E D V + +A A Sbjct: 71 KGGYVLAREPQDITLLEIVSIIEGNRQVKE-----NTDLSTVEMKLIQDSWHQANQAAQS 125 Query: 121 VLTQYSIECLVRNRSS 136 +L QY++ L + R S Sbjct: 126 ILEQYTLLDLCKQRES 141 >gi|189347463|ref|YP_001943992.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM 245] gi|189341610|gb|ACD91013.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola DSM 245] Length = 168 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TDY IR L+ N IA I FL ++LQ +++ G+V + G Sbjct: 1 MKVLTKNTDYAIRALLSLGSANGGYLSARSIAGEQDIPYQFLRRLLQEMIRHGLVVSKEG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R I + ++++ + V+EC +I C C L + + Sbjct: 61 AGGGFMLARNPHDIRVRELIEIFQGRVQVSECLFRKQI-CANRARCVLRHEIMRIEQVVE 119 Query: 120 DVLTQYSIECLVRN 133 +I L+ + Sbjct: 120 REFDNITIGKLLGD 133 >gi|283957139|ref|ZP_06374603.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|283791315|gb|EFC30120.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni 1336] Length = 136 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117 +GG L + +Q TI ++V + E + V EC CP +C L +L N Sbjct: 60 KGGFALIKEPNQYTIKEIVNSAEKKDISVFECSGG---TCPNNKEKNCTLMPMLVNLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 + L ++E +++N Sbjct: 117 VDEFLDSITLEDIMKNN 133 >gi|330994034|ref|ZP_08317964.1| Protein aau3 [Gluconacetobacter sp. SXCC-1] gi|329758980|gb|EGG75494.1| Protein aau3 [Gluconacetobacter sp. SXCC-1] Length = 153 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY + L+ + ++ + I E + K+L+ L GIV + RG R Sbjct: 3 KLSKLTDYAVVALVRLG-QKEEVTTSPVLSRSTGIPEPTVAKVLKILATQGIVTSQRGAR 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL P ++I+I V++A + + C DC +CGL A + Sbjct: 62 GGYRLAHPLEEISIAAVIEAIDGPISLTTCVDGG--DCDARSTCGLGGEWDLVNTAIRNA 119 Query: 122 LTQYSIECL 130 L+ + + Sbjct: 120 LSVIMLSDM 128 >gi|296536722|ref|ZP_06898782.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC 49957] gi|296262953|gb|EFH09518.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC 49957] Length = 183 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY + VL +A A I+E + K+L+ L A +VE +RG R Sbjct: 27 RLSKLTDYAVVVLARL-EAEGGVQTAPGLAAATGIAEPTVSKVLKHLGHASLVEGLRGAR 85 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RP I + DV+ A + + C C G C + A Sbjct: 86 GGYRLARPLSSIPLSDVICAIDGPIALTACVDGATGGCEAEGLCPVRGRWDPVNEAIRAA 145 Query: 122 LTQYSIECLVRNRSS 136 L+ S+ + RS+ Sbjct: 146 LSAISVADIAAPRSA 160 >gi|260426151|ref|ZP_05780130.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] gi|260420643|gb|EEX13894.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45] Length = 162 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T++T Y ++ LM A+ I ++++ + FL IL L KAG + RGR Sbjct: 2 ITQKTKYALKSLMTLGALEKGAALTIEEVSQRTGAPKRFLEHILLDLRKAGYLGARRGRA 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117 GG L R ++++ ++++ + C + DC +C L V + + Sbjct: 62 GGYFLIREPSKVSLGELLQQIDGPIAPLPCLSRRSYRRCDDCDDEEACQLRRVFGEIFWS 121 Query: 118 FFDVLTQYSIECLVRNR 134 + ++ +++ L+R+ Sbjct: 122 YLLLIESLTLQDLLRDP 138 >gi|254455677|ref|ZP_05069106.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211] gi|207082679|gb|EDZ60105.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211] Length = 130 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 13 VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L+ A ++ P + I+ IS +L +I L K IV+++RG +GG L + + Sbjct: 2 ALVDLARFDNINPVSLRDISLRQGISLDYLEQIFSKLKKDQIVKSIRGTQGGYVLSKKPN 61 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECL 130 +I + ++ A +E +C K C + C ++ + N + S+E L Sbjct: 62 EIKLTNIFHAVDEKVKTVQCKKESKKGCNGKATKCVTHNLWDELENHINSFFDKKSLEDL 121 Query: 131 VRNRSSIK 138 +++ + + Sbjct: 122 LKSSTENR 129 >gi|29827903|ref|NP_822537.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29605004|dbj|BAC69072.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 160 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ ++ + + + P +++AE +S +L K LQ L +AG+V +V+G+ Sbjct: 1 MKMSGGVEWALHCCVVL-TSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R IT+LDVV+A + C A+ C + C + + Sbjct: 60 AGGYVLTREPASITVLDVVEAVDGPDQAFTCTEIRQRGPLATPAESCAV--PCAIARAMT 117 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A A+ L SI LV+N Sbjct: 118 GADAAWRAALRAVSIADLVQN 138 >gi|145595671|ref|YP_001159968.1| Rrf2 family transcriptional regulator [Salinispora tropica CNB-440] gi|145305008|gb|ABP55590.1| transcriptional regulator, BadM/Rrf2 family [Salinispora tropica CNB-440] Length = 200 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-------NRISQIAEACCISELFLFKILQPLVKAGI 53 M L+ R DY +R + A QIA A I FL IL L + G+ Sbjct: 45 MRLSARVDYALRAVAELASATGGVSTGRGRFVTADQIARAQEIPPKFLESILLQLRRGGV 104 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 V+ RG GG L RPA +I++ +V++ + ++ L V Sbjct: 105 VQAQRGPEGGYWLARPAGEISLAEVIRVIDGPLAHVRGQRPEQLGYHGAAR-ALQDVWIA 163 Query: 114 ALNAFFDVLTQYSIECLVR 132 + +L ++ + Sbjct: 164 LRASERQILELVTVADVAD 182 >gi|169333748|ref|ZP_02860941.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM 17244] gi|169259597|gb|EDS73563.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR L+Y A D I A I E +L+K++ + G VE VRG Sbjct: 1 MQLNITTDYAIRSLIYIA-EKDREVSRRDICSATKIPENYLYKLMAKFRECGYVEAVRGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L I++ D+V E S + C + G+C + + + Sbjct: 60 DGGYKLIVDPKDISVFDIVTLVEGSININRCALDGRECSKDGHGNCKVHAFYVGLQGSIE 119 Query: 120 DVLTQYSIECLVR 132 +L + +++ L+R Sbjct: 120 KILRKTTLKSLMR 132 >gi|83269916|ref|YP_419207.1| hypothetical protein BAB2_1077 [Brucella melitensis biovar Abortus 2308] gi|256015879|ref|YP_003105888.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915] gi|82940190|emb|CAJ13243.1| Protein of unknown function UPF0074 [Brucella melitensis biovar Abortus 2308] gi|255998539|gb|ACU50226.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915] Length = 131 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +++ A + + S+IAE I FL I L AG V + +G+ GG L PA + Sbjct: 1 MVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLAHPASE 60 Query: 73 ITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAFFDVLTQYSIEC 129 I I ++++A + + C + C C + V+ A +VL ++ Sbjct: 61 IAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAIANVLDHRTLAD 120 >gi|56698540|ref|YP_168916.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56680277|gb|AAV96943.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 172 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M T+ ++ A + D +AE + E +L K +Q L AGIVET RG Sbjct: 1 MKHTEGLEWAAHACSLLAALPPDTSLPARLLAEFFDLPEPYLAKQMQKLSAAGIVETRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES------FFVAECFASHKIDCPLVGSCGLTSVLRK 113 RGG L R +I++L +V+A + + C S D + CG+ + + Sbjct: 61 PRGGYALARAPAEISLLQMVQAIDGETRHFTCTELRRCGPSGVEDSQYLRPCGIARSMWR 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A+ L ++ L+R Sbjct: 121 AEAAWRRELAGVTLADLLR 139 >gi|315650361|ref|ZP_07903433.1| transcription regulator [Eubacterium saburreum DSM 3986] gi|315487472|gb|EFU77782.1| transcription regulator [Eubacterium saburreum DSM 3986] Length = 139 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + V++ + D + IA+ ISE +L I++ LVK ++ +RG Sbjct: 1 MKISTKGRYSLLVMIDLTENQSDDFIPLRDIAKRQDISEKYLESIIKLLVKNKLLVGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + IT+ +V++ EE+ + E + K Sbjct: 61 KGGGYKLTKRPSDITVGEVLRIAEENIMIDE---EDTESMYRTSEYRTIDMWSKLSKMIN 117 Query: 120 DVLTQYSIECLV 131 D SI L+ Sbjct: 118 DYFDSISIADLI 129 >gi|304321528|ref|YP_003855171.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503] gi|303300430|gb|ADM10029.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503] Length = 134 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 3/134 (2%) Query: 14 LMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + A P + IA +S FL +IL+ L +AG+VE+ RG GG RL R A Sbjct: 1 MADIATQEAATFPVTVQAIAARQRLSAPFLEQILRKLRRAGLVESRRGVNGGYRLARRAA 60 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECL 130 +I + +VV+A EE C + C + C + L S+ + Sbjct: 61 EIPVSEVVRAVEEEIRSTACQPGAVLGCTGTSARCLTHHLWSGLDRHIESYLADISLADI 120 Query: 131 VRNRSSIKKIFNAG 144 ++ + G Sbjct: 121 ADKTYEAERAVDHG 134 >gi|84503551|ref|ZP_01001602.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola batsensis HTCC2597] gi|84388041|gb|EAQ01089.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola batsensis HTCC2597] Length = 165 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + +S +A+ IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPEGGLVTLSDVAKRQNISLPYLEQLFVKLRRAEVVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I +++V+ A +E+ A + +T+ L + L+A Sbjct: 61 PGGGYRLARPAAEIRVIEVLAAVDETIDALHKGAGATGGLSGTRAQSVTNRLWEGLSAQV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V N Sbjct: 121 YVFLHQTRLSDVVGN 135 >gi|182679703|ref|YP_001833849.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635586|gb|ACB96360.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 162 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +AG+V T+ G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113 GG RL RP ++T LD+V+A E C C C + ++ + Sbjct: 61 PSGGYRLARPPTELTFLDIVEAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWE 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A+ L ++ L R Sbjct: 121 ADEAWRQKLRGVTLSDLGR 139 >gi|312973225|ref|ZP_07787397.1| rrf2 family protein [Escherichia coli 1827-70] gi|310331820|gb|EFP99055.1| rrf2 family protein [Escherichia coli 1827-70] Length = 149 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG GG L + A Sbjct: 1 MLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I + +V+ A +ES C C ++ R + L ++ LV Sbjct: 61 IAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGELVN 118 Query: 133 NRSSI 137 N+ + Sbjct: 119 NQEVL 123 >gi|256391950|ref|YP_003113514.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256358176|gb|ACU71673.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 145 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ RTDY +RVL+ A + P IAE+ I FL +++ L AG+V + RG Sbjct: 1 MRVSARTDYAVRVLIELAAADSRPVTCEAIAESQQIPYRFLKAVVRDLRVAGLVRSQRGC 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + R A +I + DVV+A + + P + GL D Sbjct: 61 EGGYWIGREAAEIALADVVRAVDGELLTVNDVPPADVAYP-APAAGLGLFWLALGARVED 119 Query: 121 VLTQYSIECLVRN 133 + SI L+ Sbjct: 120 LFGAVSIADLLNQ 132 >gi|53804893|ref|YP_113471.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] gi|53758654|gb|AAU92945.1| Rrf2 family protein [Methylococcus capsulatus str. Bath] Length = 153 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDY I +L A + +++A+ I+ KIL+ L +AGIV + RG R Sbjct: 3 RISKLTDYAIILLDQMARAGEQTFAAAELADQTSIAMPTTSKILKALARAGIVTSTRGAR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + + ++ ++ A E + EC A + C SC + S A Sbjct: 63 GGYALAQKPEHTSVARIIDAIEGPIALTECSAEQAL-CQQSSSCDVRSHWNVINRAVQTT 121 Query: 122 LTQYSIECLVR 132 L S+ ++R Sbjct: 122 LESVSLADMIR 132 >gi|85709850|ref|ZP_01040915.1| predicted transcriptional regulator [Erythrobacter sp. NAP1] gi|85688560|gb|EAQ28564.1| predicted transcriptional regulator [Erythrobacter sp. NAP1] Length = 144 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ DY + + A H D +++A + + +++ L AG++ +VRG Sbjct: 1 MRLSNLADYAVITMCQAATHCGDGRVSAAELASETGLPVPTVQRLVSKLTSAGLLRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG++L RPA IT+ D+V+A E + C +C C + Sbjct: 61 AGGGLQLGRPAAAITVADIVEAVEGPIALTACV--DHKECEHEARCSMKPHWPIINAKLR 118 Query: 120 DVLTQYSIECL 130 L + ++E L Sbjct: 119 GALAEVTLEHL 129 >gi|288941147|ref|YP_003443387.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896519|gb|ADC62355.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum DSM 180] Length = 156 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + ++ A+H P ++ I+ + IS +L ++ L +V VRG Sbjct: 1 MRLSTKGRYAVTAMLDLALHAGKGPVTLADISSSQGISLSYLEQLFAALRAKKLVRGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R +I+I +++ A +E + C + +C C + + + F Sbjct: 61 PGGGYYLGRAPSEISIANIICAVDEWVELTRC--GGRQNCHEGQRCLTHHLWDQLSDEIF 118 Query: 120 DVLTQYSIECLVRN 133 L+ S++ LV Sbjct: 119 RFLSDISLQDLVDR 132 >gi|83593906|ref|YP_427658.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576820|gb|ABC23371.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 154 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + K TDY + +L+ A D QIA + + K+++ LV+ +V + RG Sbjct: 3 RINKLTDYAVVLLVDMA-RTDKVRAAQQIACDTGVPLPTVAKVMKALVRGNLVISQRGAT 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RPA +IT+ D+++A E + C + C L C + + + Sbjct: 62 GGYGLARPACEITVADMIQALEGPVALTACVETTDDACGLETLCPMHGHWNRVNKRVEEA 121 Query: 122 LTQYSIECLV 131 L S+ + Sbjct: 122 LRTVSLAEMA 131 >gi|114768830|ref|ZP_01446456.1| Rrf2 family transcriptional regulator [alpha proteobacterium HTCC2255] gi|114549747|gb|EAU52628.1| Rrf2 family transcriptional regulator [alpha proteobacterium HTCC2255] Length = 153 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ AI + + +I++ IS +L ++ L + I+ +VRG Sbjct: 1 MKLSTKGRYAMIALVDLAIEGEKGLVSLGEISDRQNISLNYLEQLFLKLRRKEIITSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG +L + A+ I + D++ A +E A + L++ L ++L+A Sbjct: 61 PGGGYKLAKSAEAIRVSDILTAVDEDMNALSKGAGVSGASSGTRAQSLSNRLWESLSAQV 120 Query: 119 FDVLTQYSIECLVRNR 134 F L + L+ N+ Sbjct: 121 FVYLHATRLSDLIENQ 136 >gi|239918539|ref|YP_002958097.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281415252|ref|ZP_06246994.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239839746|gb|ACS31543.1| rrf2 family protein, putative transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 169 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L ++ L+ P + +AEA +S +L K LQ L G+V + G Sbjct: 4 MQLPNGVEWTAHCLVVLEQFGSTQPVPSAALAEAYGLSPTYLNKHLQKLAANGLVTSTPG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 + GG L RPA +IT+ DVV A + + C F + G C + S + Sbjct: 64 QAGGFALARPAQEITLADVVDALDGRGPIFRCTEIRCQGLFKERSAEIKASGPCRIASAM 123 Query: 112 RKALNAFFDVLTQYSIECLVR 132 R+A +A+ L+Q SI L Sbjct: 124 RQAEDAWRSSLSQVSITDLAA 144 >gi|86138298|ref|ZP_01056872.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. MED193] gi|85824823|gb|EAQ45024.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. MED193] Length = 153 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + + I++ IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPEGALVVLGDISKRQNISLPYLEQLFVKLRRAELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R +I ++D++ A +E+ A + LT+ L ++L+A Sbjct: 61 PGGGYRLARRPSEIRVVDILSAVDETVDAMHKGAGASGATSGSRAQSLTNRLWESLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +++N Sbjct: 121 YVFLHQTRLSDVIQN 135 >gi|313894575|ref|ZP_07828138.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon 158 str. F0412] gi|313440765|gb|EFR59194.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon 158 str. F0412] Length = 162 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A + + + +AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMAMLPSGTKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 GG L R +I++LDV++A E ++ C S C G C + + + Sbjct: 61 VDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGTIQH 118 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 L + + + L + +I Sbjct: 119 QLIGQLKEVNFKILAQREQTI 139 >gi|319948404|ref|ZP_08022545.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4] gi|319437958|gb|EFV92937.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4] Length = 152 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L++ +D +R LM A+ ++ + IAE+ S + KI+ LV+ G+ E+ R Sbjct: 1 MQLSRSSDLALRALMRLAVADEREERMTAAVIAESVEASVSHVAKIVSRLVELGLAESRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ + ++ +++ E V +C CPL G+CGL L A AF Sbjct: 61 GRGGGLVITELGRHESVGRLLRRLEGPGEVVQC--EGPTPCPLAGNCGLRRALVDAREAF 118 Query: 119 FDVLTQYSIECLVR 132 F L +++ +VR Sbjct: 119 FATLDPLTVDGIVR 132 >gi|126736370|ref|ZP_01752112.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] gi|126714191|gb|EBA11060.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] Length = 154 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + +++I++ IS +L ++ L +AG+V++VRG Sbjct: 1 MKLSTKGRYAMVALADLALQDGNALVNLTEISKRQDISLPYLEQLFVKLRRAGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA I + +++ A +E+ A + +T+ L + L+A Sbjct: 61 PGGGYRLARPAADIRVSEILGAVDETVSAMHKGAGASGAASGSRAQSMTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + +V N Sbjct: 121 YVFLHQARLSDVVSNE 136 >gi|227820042|ref|YP_002824013.1| Rrf2 family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36958592|gb|AAQ87060.1| probable RF2 family protein [Sinorhizobium fredii NGR234] gi|227339041|gb|ACP23260.1| putative Rrf2 family transcriptional regulator protein [Sinorhizobium fredii NGR234] Length = 162 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +AG+V T G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKSLAEFHGVPKEYLSKALQSLSQAGLVHTTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113 GG RL R ++T LD+V+A E C C G+C + V+ + Sbjct: 61 PSGGYRLARKPAELTFLDIVEAVEGKARTFVCNNIRANNPCRPQGYCETGACAVARVMWE 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A+ + L + L+ Sbjct: 121 ADEAWREKLRSVRLSDLID 139 >gi|163784477|ref|ZP_02179349.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1] gi|159880255|gb|EDP73887.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1] Length = 143 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 4/129 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 LT IR ++Y A D I +IAE +S FL KIL LVK +E+ RG Sbjct: 2 LTTACKDAIRAMIYIAKKQKKSDSFISIKEIAENLNLSFYFLSKILHKLVKDRFLESYRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GGV+L RP + I++ D++ + + + +C K +C C + + Sbjct: 62 PNGGVKLARPMENISLYDIILSIDGNNVFTQCILGFK-ECSDTKPCAVHEKWVPERERIY 120 Query: 120 DVLTQYSIE 128 + ++ Sbjct: 121 QLFKNTTLA 129 >gi|329889571|ref|ZP_08267914.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] gi|328844872|gb|EGF94436.1| rrf2 family protein transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] Length = 142 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + A + +++IA IS +L ++ L K G+V+++RG GG RL + ++ Sbjct: 1 MADLAKNGSGRAVSLAEIATRQEISLSYLEQLFARLRKGGLVKSIRGPGGGYRLAKGPEE 60 Query: 73 ITILDVVKATEESFFVAECFASHKI-DCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECL 130 + D+V A +E C A C G+ C + L S+ + Sbjct: 61 TVVADIVLAVDEPIRATRCAAHGTPRGCMTGGARCITHDLWEDLGAEIHRYLAGVSLADV 120 Query: 131 VRNRSSIKKI 140 + R++ ++ Sbjct: 121 IEKRTNRARM 130 >gi|150395381|ref|YP_001325848.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150026896|gb|ABR59013.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 168 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + I + + + + +AE +S +L K LQ + AG++E V G Sbjct: 1 MKLGDGVEQAIHSVTMLSCLQPGSTLSAAALAEFHGVSTSYLLKHLQAMSGAGLLEAVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKA 114 +GG RL R ++IT+LD+V A E C + C C + + +A Sbjct: 61 PKGGYRLARAPEKITLLDIVLAVEGPEPAFRCNEIRLRGPNPYTCKPAAPCTINVAMLRA 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137 A+ L + ++ ++ + +I Sbjct: 121 EQAYRAELRRVTVAGIIADLKTI 143 >gi|84516301|ref|ZP_01003661.1| iron-sulfur cluster assembly transcription factor IscR, putative [Loktanella vestfoldensis SKA53] gi|84509997|gb|EAQ06454.1| iron-sulfur cluster assembly transcription factor IscR, putative [Loktanella vestfoldensis SKA53] Length = 153 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D +++I++ IS +L ++ L ++G+V++VRG Sbjct: 1 MKLSTKGRYAMVALADLALQPADALVNLTEISKRQDISLPYLEQLFVKLRRSGLVDSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I + +++ A +E+ A + LT+ L + L+A Sbjct: 61 PGGGYRLSRPASEIRVAEILGAVDETVSAMHKGAGASGGASGSRAQSLTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V N Sbjct: 121 YVFLHQARLSDVVSN 135 >gi|157736632|ref|YP_001489315.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri RM4018] gi|315635796|ref|ZP_07891058.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] gi|157698486|gb|ABV66646.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri RM4018] gi|315479775|gb|EFU70446.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] Length = 132 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT++++Y + L+ A + + P + +++ IS+ FL KI+Q L K +V + RG Sbjct: 1 MLLTRKSEYALLSLISIAKNKE-PKNVDVLSKELDISKSFLAKIMQNLAKHELVISHRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCPL--VGSCGLTSVLRKALNA 117 GG L +P D+ITIL++V+A EE + EC S + CP SC + +L Sbjct: 60 NGGFVLKKPLDEITILEIVEAAEERVPMVFECAPSLQ-SCPNNKAKSCIIWPLLNNLQFK 118 Query: 118 FFDVLTQYSIECLV 131 D L++ +++ + Sbjct: 119 VNDFLSKLTLKDIA 132 >gi|307152699|ref|YP_003888083.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982927|gb|ADN14808.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7822] Length = 147 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ ++ P + IA + +L K+L + +AG+V++VRG Sbjct: 1 MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L QI++ +++A E+ + S+ ++ Sbjct: 61 CLGGYQLAYQPSQISLGQILEAVGETIQP---LPGYNPVAQQAEDWVTFSLWKRLHFKLK 117 Query: 120 DVLTQYSIECL 130 D L ++ L Sbjct: 118 DALHSITLADL 128 >gi|331003016|ref|ZP_08326528.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413060|gb|EGG92435.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon 107 str. F0167] Length = 139 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + V++ + D + IA+ +SE +L I++ LVK ++ +RG Sbjct: 1 MKISTKGRYSLLVMIDLTENQSDEFIPLHDIAKRQELSEKYLESIIKLLVKNKLLVGLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + IT+ +V++ EE+ + + + K Sbjct: 61 KGGGYKLTKSPSDITVGEVLRIAEENIMMDD---EDTEGMHRTSEYRTIDMWGKLSKMII 117 Query: 120 DVLTQYSIECLV 131 + SI L+ Sbjct: 118 EYFDSISIADLI 129 >gi|310815010|ref|YP_003962974.1| Putative HTH-type transcriptional regulator rrf2-like protein [Ketogulonicigenium vulgare Y25] gi|308753745|gb|ADO41674.1| Putative HTH-type transcriptional regulator rrf2-like protein [Ketogulonicigenium vulgare Y25] Length = 153 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 7/148 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T++ Y ++ LM A RI +IA + FL IL L AG++ ++RG Sbjct: 2 ITQKMKYALKALMVLADAKAEGIAAMRIEEIARRSDTPKRFLEHILLELRNAGVIASIRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG L + + + + +++ + C + DC +C L + Sbjct: 62 RAGGYTLIKEPEAVQLSQMLRLIDGPIAPLPCLSRSAYQRCEDCSDEATCRLRRAFSEVF 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143 ++ ++ ++ L+ + + ++ + Sbjct: 122 WSYLVIIDSLTLADLIAQPAVVAQVIAS 149 >gi|313682187|ref|YP_004059925.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313155047|gb|ADR33725.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 137 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 11/138 (7%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + YG+ + A+H +I IAE I + +L +IL L K G+++++RG Sbjct: 4 ISTKGSYGLAAMYELALHYGQGHLQIRDIAEKANIPQNYLEQILATLRKEGLIQSIRGAG 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + + I + +++ A E C + + P+ L + +V Sbjct: 64 GGYLLAKAPNAIAVFEILVALEGEL----CNPTDERLQPI-----LHLYWDRIREDMKNV 114 Query: 122 LTQYSIECLVRNRSSIKK 139 + +++ LV +++ + Sbjct: 115 FHE-TLQDLVDQGNALNQ 131 >gi|239990651|ref|ZP_04711315.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 140 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 10 GIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +RVLM A+ ++A + K++ L G+++ RGR GG+ L Sbjct: 2 ALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRGRGGGLTLTS 61 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 +I +V+ E V EC CPL +C L LR A +AF+ L ++ Sbjct: 62 AGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFYAALDPITVA 119 Query: 129 CLVRNRSS 136 LV + + Sbjct: 120 DLVASPTG 127 >gi|258542739|ref|YP_003188172.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256633817|dbj|BAH99792.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256636876|dbj|BAI02845.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256639929|dbj|BAI05891.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256642985|dbj|BAI08940.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646040|dbj|BAI11988.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649093|dbj|BAI15034.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652080|dbj|BAI18014.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655137|dbj|BAI21064.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] Length = 154 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ DY I +L+ + +A + E + K+L+ L G V + RG + Sbjct: 3 KLSRLADYAIVILVKLGEQ-EGVVTSPTLAAITGVPEPTVAKVLKVLSAHGFVLSQRGAK 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL RP I++ V+ A + + C + C SCGL A Sbjct: 62 GGYRLARPLADISVASVITAVDGKIALTACVDGGE--CDTGVSCGLCGSWDTINQAIRTT 119 Query: 122 LTQYSIECL 130 L S+E + Sbjct: 120 LEGISLESM 128 >gi|99081081|ref|YP_613235.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040] gi|99037361|gb|ABF63973.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040] Length = 152 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + ++ I++ IS +L ++ L + G+V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPSEGLVVLADISKRQQISLPYLEQLFVKLRRGGLVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I +++++ A +E+ A + LT+ L + L+A Sbjct: 61 PGGGYRLARPASEIRVVEILAAVDETVDAMHKGAGASGGSSGSRAQSLTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + ++ N Sbjct: 121 YVFLHQTRLSDVIEN 135 >gi|283780532|ref|YP_003371287.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283438985|gb|ADB17427.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 178 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ +Y +R ++Y A + P Q+A + + +L K+LQ LV+AGI+ + RG G Sbjct: 2 FSQTVEYALRAVVYLAADSSQPATTEQLAAVTKVPKAYLSKVLQGLVRAGILHSQRGIGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+ L + +TIL+VV+A E + C + C L + AL L Sbjct: 62 GMTLVKSPADLTILEVVQAVEPVARIRSC--PLGLAWHGEHLCPLHRRMDDALALVEQAL 119 Query: 123 TQYSIECLVRNRSSIKKIFNA 143 ++ ++ S K +++ Sbjct: 120 GSSTLAEVLAEPSRSKPLWDG 140 >gi|158335568|ref|YP_001516740.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305809|gb|ABW27426.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina MBIC11017] Length = 145 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + +Y + L+ H P RI QIA I + +L ++L L ++G+V + R Sbjct: 1 MELSCKCEYAVLALLSLVDHYPQGEPLRIRQIAAQQHIPDRYLEQLLAILRRSGLVCSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG L R +IT+L+++ E + + + + ++A A Sbjct: 61 GARGGYLLAREPWKITLLEIINCIEGRDPQSNALPQTGLTTEKA---VVQELWQEADQAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 +L +++ L R + K+I Sbjct: 118 SKILKNCTLQDLCDRRDAKKQI 139 >gi|23500834|ref|NP_700274.1| RrF2 family protein [Brucella suis 1330] Length = 131 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +++ A + + S+IAE I FL I L AG V + +G+ GG L PA + Sbjct: 1 MVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLTHPASE 60 Query: 73 ITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAFFDVLTQYSIEC 129 I I ++++A + + C + C C + V+ A +VL ++ Sbjct: 61 IAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAIANVLDHRTLAD 120 >gi|223935695|ref|ZP_03627611.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] gi|223895703|gb|EEF62148.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] Length = 139 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ ++DY R ++ A H R+ +AE I +L +IL L IV+++R Sbjct: 1 MKLSAKSDYAARAVIGLARHYQTGESLRVEDLAEGQGIPPNYLVQILIELKSQQIVKSLR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G+ GG L RP +I++ DV++ V + A CP L + +K A Sbjct: 61 GKEGGYLLARPPAEISMADVLRCVHG--QVFDSPALSDPLCPPE----LRAAWQKLQKAV 114 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 + + L+ K++ Sbjct: 115 DAAAESINFQQLLDQSVDKGKMY 137 >gi|197301334|ref|ZP_03166419.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC 29176] gi|197299652|gb|EDY34167.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC 29176] Length = 147 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 68/134 (50%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K++ YG+R L+ A+++ + IA+ IS +L + L KA IV++++G Sbjct: 1 MKLSKKSRYGLRALIDLAVNSRTEQVSLGSIAQRNDISAQYLEHVFSALRKAHIVKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118 +GG L + + IT+ ++V+A E S+++ + + + ++ + Sbjct: 61 SQGGYFLEKAPELITVAEIVEALEGSYYLED--EEGDMSGLRGDQEAIQHLIIDRINEKN 118 Query: 119 FDVLTQYSIECLVR 132 ++L +++ LV Sbjct: 119 REILEDITLKDLVE 132 >gi|237748543|ref|ZP_04579023.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229379905|gb|EEO29996.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 172 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ T Y IR+L + P I+ ++E I + I L + I ++ G Sbjct: 13 MKLSTHTRYAIRILFELHLARG-PISIAALSELTNIGLKTVENIHAVLRQNDITASIIGA 71 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL +P I++ +++ +E CF DCP C SV + Sbjct: 72 HGGIRLNKPLSAISLGKMIELFDEGVRFVVCFGEKSNDCPRQNVCETRSVWKTISGQIQK 131 Query: 121 VLTQYSIECLVRNRSS 136 L S+E ++ Sbjct: 132 ELDTVSLEAILDQYRE 147 >gi|119356346|ref|YP_910990.1| BadM/Rrf2 family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119353695|gb|ABL64566.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides DSM 266] Length = 164 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TDY IR L++ IA I FL +++Q ++ G+V + G Sbjct: 1 MKVLTKNTDYAIRALLFLGARKGSYVSAKTIAAEQEIPYQFLRRLMQDMIGHGLVVSKGG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D I I D+++ + V+EC K+ C +C L + + Sbjct: 61 ASGGFMLLKEPDGIRINDLIEIFQGKIQVSECMFRKKL-CSNRATCVLRHEIMRIEQVVH 119 Query: 120 DVLTQYSIECLVRNRSSIK 138 + +I L+R+ + Sbjct: 120 QEFEKVTIGKLMRDLDEAR 138 >gi|332528839|ref|ZP_08404813.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041698|gb|EGI78050.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 190 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 4/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ + + ++ A+ P ++ I + IS +L ++ L +A +VE+ RG Sbjct: 1 MRLSAKSRFAVAAMIDLALREAAGPVPLNSIGQRLQISLSYLEQLFSKLRRANLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A ++++ D+++A E + + D G + + Sbjct: 61 PGGGYTLGRSAQRVSVADIIRAVEGAQEL---MGEEVADAGEAGLQLTRDLWSGLSSRMM 117 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 D + + L + S A Sbjct: 118 DHMEGIKLHQLCEEQRSKGVDLGA 141 >gi|15644275|ref|NP_229327.1| hypothetical protein TM1527 [Thermotoga maritima MSB8] gi|4982094|gb|AAD36594.1|AE001800_4 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 140 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K Y +R+L+ ++ N P S++AE I+ F K+L L ++G+V +++G+ GG Sbjct: 7 KHVRYALRLLVRLSLEN-RPMSSSELAEKELITRNFALKVLHYLKRSGLVNSIKGKNGGF 65 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 L + D+I+ LDV+ E+ + +C + C +C + + D+ + Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDCNSR----CKNYRACRVKYFWNWLSDYLKDLFSN 121 Query: 125 YSIECLV 131 +I+ + Sbjct: 122 ITIKDIA 128 >gi|315186460|gb|EFU20220.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6578] Length = 138 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG++ L++ A+ H P + +IAE ISE FL + L AG+V + +G Sbjct: 1 MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L RP +IT+ +VV A E F A D P + Sbjct: 61 KGGGYTLRRPPHRITLREVVTAFEPYVIFPLSHEADEGPDAP---------IWADLEKHI 111 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 + S+E LV + I + Sbjct: 112 QVWMEGRSLEELVGLVKRRRGILD 135 >gi|284032632|ref|YP_003382563.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811925|gb|ADB33764.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM 17836] Length = 159 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M ++ ++DY +R L+ ++ +++ A I FL IL L +AG++ + Sbjct: 1 MRVSAKSDYALRALIEITQRWVANDPSVVSAEELSRAQGIPHGFLQGILADLRRAGVLSS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 RG+ GG +L ++I++ DV++A + + L V A Sbjct: 61 QRGQSGGWKLAVDPNEISVADVMRAVDGPIVSISGVRPESVAYNERAV-VLQRVWIAARA 119 Query: 117 AFFDVLTQYSIECLVRNR 134 + DVL ++ L + + Sbjct: 120 SLRDVLEHTTLIDLAKGK 137 >gi|307718973|ref|YP_003874505.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6192] gi|306532698|gb|ADN02232.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6192] Length = 138 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG++ L++ A+ H P + +IAE ISE FL + L AG+V + +G Sbjct: 1 MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L RP +IT+ ++V A E F A D P + Sbjct: 61 KGGGYTLRRPPHRITLREIVTAFEPYVIFPLSHEADEGPDAP---------IWADLEKHI 111 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 + + S+E LV + I + Sbjct: 112 QVWMEERSLEELVGLVKRRRGILD 135 >gi|219883349|ref|YP_002478510.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] gi|219862194|gb|ACL42534.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] Length = 164 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ I + + D ++A +S +L K +Q L + G+V +++G Sbjct: 4 MKLSGGVEWAIHCCVVLS-RMDGAVPAGKLAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L RPADQI+ILDVV+A E + C + C + C + + Sbjct: 63 AGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIRQRGPLGTPPEKC--LTHCPIAIAMM 120 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 A A+ D L + +I L SS Sbjct: 121 TAETAWRDSLNKITIGDLAHQVSS 144 >gi|226195510|ref|ZP_03791098.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pakistan 9] gi|225932470|gb|EEH28469.1| iron-sulfur cluster assembly transcription factor IscR [Burkholderia pseudomallei Pakistan 9] Length = 154 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 ++ I++ IS +L ++ L + IVE+VRG GG L R A +T+ D++ A +E Sbjct: 1 MTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTVADIIIAVDE 60 Query: 85 SFFVAECFASHKIDCPLV----GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 +C K C G C + + L S++ LV + + Sbjct: 61 PLDATQC--GGKGACEGSKQPDGHCMTHELWSTLNQKMVEYLDSVSLQDLVDQQRA 114 >gi|86358381|ref|YP_470273.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282483|gb|ABC91546.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 162 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +A +V+T G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL R +I LD+V+A E C C G C + V+ + Sbjct: 61 PSGGYRLARSPSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARVMWE 120 Query: 114 ALNAFFDVLTQYSIECLV 131 A A+ + L + LV Sbjct: 121 ADEAWRNTLRAVRLSDLV 138 >gi|225028919|ref|ZP_03718111.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353] gi|224953758|gb|EEG34967.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353] Length = 149 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 10/146 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+L+K++ YGI L+ A++ D ++S IAE IS +L +I L KAG+V +V+G Sbjct: 1 MNLSKKSRYGITALIDLAVYAKDQCVQLSSIAERNNISVKYLEQIFSSLRKAGLVRSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118 +GG L + + IT+ DV+ A + S+ + + G+++ ++K L + Sbjct: 61 PQGGYLLAKRPESITVADVIHALDGSYLL----EDERSVVSGTDEKGISTAIQKLLIDQM 116 Query: 119 FD----VLTQYSIECLVRNRSSIKKI 140 D +L Q ++ LV + ++ Sbjct: 117 NDQTDRLLKQLTLRNLVDSSMEYSQV 142 >gi|120434688|ref|YP_860375.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] gi|117576838|emb|CAL65307.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] Length = 137 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L Y A D P + S+I+E+ IS+ FL IL L K+G + + +G+ Sbjct: 2 LSKKTKYGIKALAYIARKKDRKPVQASEISESENISQKFLESILLELRKSGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + V++ E + C + DCP +C + ++ + +A Sbjct: 62 GGYYLIKEPAEIKMTAVIRVLEGPIAMVPCVSLNYYEKCNDCPDEKTCSVHKLMIQLRDA 121 Query: 118 FFDVLTQYSIECLV 131 +VL + ++E + Sbjct: 122 SLNVLGENTLEDIA 135 >gi|86605142|ref|YP_473905.1| transcriptional regulator [Synechococcus sp. JA-3-3Ab] gi|86553684|gb|ABC98642.1| putative transcriptional regulator [Synechococcus sp. JA-3-3Ab] Length = 150 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT R Y IR L+ A+ + IAE I +L K+L L +AG+V + RG Sbjct: 1 MRLTTRATYSIRALLDLAML-GQVASVRAIAERQQIPAPYLEKLLIELRQAGLVCSQRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG RL R +I I ++ A ES AE + + ++ R+ Sbjct: 60 QGGYRLARAPRRIPISAILAAVGESLDPLPAERAGAQQEGSADGLDWVTEALWRRIAQRV 119 Query: 119 FDVLTQYSIECL 130 VL + ++E L Sbjct: 120 EQVLEETTLEDL 131 >gi|283780983|ref|YP_003371738.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283439436|gb|ADB17878.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 175 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + GI L+ + P ++A +S + K+L L +AG+V + G+ GG L Sbjct: 8 VEIGIHTLLCL-LRTTQPVSSHELATYQGLSPTHVAKVLGRLQQAGVVASSPGKTGGYLL 66 Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117 R A +I++ DVV A E + C A + C + S +++A +A Sbjct: 67 ARSAAEISLTDVVDAIEGPKPLFACRDIRFRCELLAGDPPEWATCSMCAVNSAMKRAESA 126 Query: 118 FFDVLTQYSIECL 130 DVL + ++ L Sbjct: 127 MRDVLAKTTLRQL 139 >gi|119718638|ref|YP_925603.1| BadM/Rrf2 family transcriptional regulator [Nocardioides sp. JS614] gi|119539299|gb|ABL83916.1| transcriptional regulator, BadM/Rrf2 family [Nocardioides sp. JS614] Length = 152 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ ++DY +R L+ A D ++ I FL IL L +AGIV + RG Sbjct: 1 MRVSAKSDYALRALIEMASRADGRAVSAEELGRLQEIPHGFLQAILADLRRAGIVMSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG R+ R A +++ DV++A + + L V A ++ Sbjct: 61 QSGGWRMGRSAADVSVADVIRAVDGPLVSVYGLRPEAVSYNEAAD-VLQHVWIAARHSLR 119 Query: 120 DVLTQYSIECLVRNR 134 DV Q SI+ L R Sbjct: 120 DVFEQVSIQQLADGR 134 >gi|271966528|ref|YP_003340724.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509703|gb|ACZ87981.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 154 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ RT Y +R ++ A D P +IA I F IL L +AG++ + RG Sbjct: 2 MRISARTQYALRAMVALAA-ADNPIHAERIAATQDIPRRFCDNILLQLRRAGLIHSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L PA++IT+ DV++ +E + + L + + Sbjct: 61 DGGYWLAHPAEKITLADVIRVSEG-------VTEGGAEYFPGVAAPLADIWAEIRQHQHA 113 Query: 121 VLTQYSIECLVR 132 +L++ ++ +V Sbjct: 114 LLSEITLAQIVA 125 >gi|294811041|ref|ZP_06769684.1| Rrf2 family protein, putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294323640|gb|EFG05283.1| Rrf2 family protein, putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 136 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 M A+H+D P ++A A + K++ L G+VE RGR GG+ L Sbjct: 1 MRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRGRGGGLALTTAGRTG 60 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 +I +V+ E + V C CPL +C L SVLR A AF+ L Y+++ LV + Sbjct: 61 SIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFYTALDPYTVDDLVAS 118 Query: 134 RS 135 + Sbjct: 119 PT 120 >gi|300114068|ref|YP_003760643.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540005|gb|ADJ28322.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii C-113] Length = 140 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 12/137 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R Y I +M A+ + IA+ IS +L +I L G+VE +RG Sbjct: 1 MRFSNRPRYAISAMMNLALVKQQETVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG L R A++ITI +++ A + + + + Sbjct: 61 PGGGYHLTRTAEKITIAEIIAAVDKQPGKLNPLAIATNSVSEAER--------LWHDFST 112 Query: 117 AFFDVLTQYSIECLVRN 133 +D L Q ++ L + Sbjct: 113 RLYDFLNQITLADLAQR 129 >gi|148270395|ref|YP_001244855.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288979|ref|YP_001739217.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2] gi|281412702|ref|YP_003346781.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|147735939|gb|ABQ47279.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila RKU-1] gi|170176482|gb|ACB09534.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2] gi|281373805|gb|ADA67367.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga naphthophila RKU-10] Length = 140 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K Y +R+L+ ++ N P S++AE I+ F K+L L ++G+V +++G+ GG Sbjct: 7 KHVRYALRLLVRLSLEN-RPMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGF 65 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 L + D+I+ LDV+ E+ + +C + C +C + + D+ + Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDCNSR----CKNYRACRVKYFWNWLSDYLKDLFSN 121 Query: 125 YSIECLV 131 +I+ + Sbjct: 122 ITIKDIA 128 >gi|118469239|ref|YP_889225.1| rrf2 family protein (transcriptional regulator) [Mycobacterium smegmatis str. MC2 155] gi|118170526|gb|ABK71422.1| rrf2 family protein (putative transcriptional regulator) [Mycobacterium smegmatis str. MC2 155] Length = 156 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + +Y +R ++ A + + + +A+A I FL IL L +V + RG Sbjct: 1 MRMSAKAEYAVRAMVQLATVSDGELLKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L RPAD I+I DV++ + + + LT V R + Sbjct: 61 RDGGYALARPADAISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119 Query: 120 DVLTQYSIECLVR 132 VL + S+ + Sbjct: 120 SVLEETSLSDVAA 132 >gi|225028923|ref|ZP_03718115.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353] gi|224953762|gb|EEG34971.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353] Length = 140 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +RV++ A H + + IA+ IS+ +L IL+ LVK +++ +RG+ Sbjct: 2 ISTKGRYALRVMLDLAEHGNEGYIPLKDIAKRQAISDKYLESILKSLVKQKMLKGLRGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R + ++ ++++ E + C DCP C + +K + D Sbjct: 62 GGYQLTRTPAEYSVGEILEVAEGTLAPVACLMDDAEDCPRANQCRTLPMWKKFDSLVHDF 121 Query: 122 LTQYSIECLVRNRSSIKK 139 ++E ++ + + + Sbjct: 122 FYNITLEQILEDPKFLPE 139 >gi|126737794|ref|ZP_01753524.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. SK209-2-6] gi|126721187|gb|EBA17891.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseobacter sp. SK209-2-6] Length = 153 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + + I++ IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALSDIALQPEGTLVVLGDISKRQDISLPYLEQLFVKLRRAELVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I ++D++ A +E+ A + LT+ L ++L+A Sbjct: 61 PGGGYRLARPASEIRVVDILSAVDETVDAMHKGAGASGGASGSRAQSLTNRLWQSLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + ++ N Sbjct: 121 YVFLHQTRLSDVINN 135 >gi|88813311|ref|ZP_01128550.1| Rrf2 family protein [Nitrococcus mobilis Nb-231] gi|88789483|gb|EAR20611.1| Rrf2 family protein [Nitrococcus mobilis Nb-231] Length = 163 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 15/147 (10%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ ++ Y + LM+ AIHN P +++I+ IS ++ +I+ L +AG+V+ G Sbjct: 3 RLSTKSRYAVSALMHLAIHNQAGPVPLAEISVCQGISMSYVEQIVGRLRRAGLVQGTPGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R + I++ +V+ E+ + L V + Sbjct: 63 GGGYRLGRSPEHISVGEVIALMEDG------RGGRQYTSTLD-----RIVWSRLTQRIDA 111 Query: 121 VLTQYSIECLVRN---RSSIKKIFNAG 144 L ++ V+ R+++ + + G Sbjct: 112 FLRGVTLADFVQRPQIRAALARQYAGG 138 >gi|1381739|gb|AAB09668.1| HI0379 homolog [Neisseria meningitidis] Length = 150 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG Sbjct: 1 MRLTTKGLSAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PA +I I ++ A E+ +C K +C C + Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 D L +++ ++ ++ Sbjct: 119 DYLGSVTLQSIIETEKQRRR 138 >gi|328886610|emb|CCA59849.1| Rrf2 family transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 160 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ + + + P +++AE +S +L K +Q L +AG+V +V+G+ Sbjct: 1 MKLSGGVEWALHCCVVLTAAS-RPVPAARLAELHDVSPSYLAKQMQALSRAGLVRSVQGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L RPA +IT+LDVV+A + C A+ C +C + + Sbjct: 60 TGGYVLTRPAVEITLLDVVQAVDGPDPAFVCTEIRQRGPLATPPEKC--TKACPIARAMG 117 Query: 113 KALNAFFDVLTQYSIECLVR 132 A A+ L +I LV Sbjct: 118 AAEAAWRASLAATTIADLVA 137 >gi|256420420|ref|YP_003121073.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035328|gb|ACU58872.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis DSM 2588] Length = 165 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L K +Y I + Y + D I+ +A ISE +L KI L K G+V + G + Sbjct: 4 LGKGVEYAIHSMYYLVDVSRDSAMTIADMATFQNISESYLAKIFTRLQKGGLVRSALGVK 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-------VGSCGLTSVLRKA 114 GG L RPA++I+ D+ A E + EC + C + G C + +V +A Sbjct: 64 GGYVLARPAEEISFWDIAVAVEGRVSLFECH-DVRSGCVIGMTNGGQTGVCTVHAVFLEA 122 Query: 115 LNAFFDVLT-------QYSIECLVRNRS 135 L ++ ++ + + Sbjct: 123 SQKLEAFLKTRNLRWLHTTLLDIIPDET 150 >gi|219883346|ref|YP_002478507.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] gi|219862191|gb|ACL42531.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] Length = 161 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ I + + D ++A +S +L K +Q L + G+V +++G Sbjct: 4 MKLSGGVEWAIHCCVVLS-RMDGAVPAGKLAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L RPADQI+ILDVV+A E + C + C + C + + Sbjct: 63 AGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIRQRGPLGTPPEKC--LTHCPIAIAMM 120 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 A A+ D L + +I L SS Sbjct: 121 TAETAWRDSLNKITIGDLAHQVSS 144 >gi|209550103|ref|YP_002282020.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535859|gb|ACI55794.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 162 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +A +V+T G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL RP+ +I LD+V+A E C C G C + ++ + Sbjct: 61 PSGGYRLARPSSEINFLDIVEAVEGKARSFTCTNIRDNNPCRPAGYCDSKPCAVARIMWE 120 Query: 114 ALNAFFDVLTQYSIECLV 131 A A+ D L + + LV Sbjct: 121 ADEAWRDTLRRVRLSDLV 138 >gi|310659303|ref|YP_003937024.1| badm/rrf2 family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308826081|emb|CBH22119.1| Transcriptional regulator, BadM/Rrf2 family [Clostridium sticklandii] Length = 128 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY +R++ Y A + S IA+ + F+ KIL+ L AGI + RG Sbjct: 1 MKITQESDYALRIVQYLANQEESRVGASIIAKEQDVPLRFVLKILRKLNAAGITKAYRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 GG L + I+ +V++A E ++ C A+ K +C + C + L Sbjct: 61 SGGYALTKEPGDISYKEVIEAIEGDIYLNRCLAN-KTNCTRDAADKCSIHKKLLGIQKFL 119 Query: 119 FDVLTQ 124 + L + Sbjct: 120 DEELGK 125 >gi|289524284|ref|ZP_06441138.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502456|gb|EFD23620.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 150 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ + + A+H + + +++E +SE K+ Q L KAG+V ++RG Sbjct: 7 QISQAASIALHGMGILALH-ERRISVRKLSEMISVSEQHAAKVFQRLTKAGLVNSLRGPS 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GGV L PA +IT+ +V +A E C + K CP GSC +L++ F Sbjct: 66 GGVELAVPASKITLYEVYEAIEGKPSSDYCLIN-KQHCPF-GSCIFGGMLKRINEEFIKY 123 Query: 122 LTQYSIECLVRN 133 L+ ++ LVR+ Sbjct: 124 LSSRTLADLVRS 135 >gi|23013034|ref|ZP_00052988.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 130 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 + IAE IS +L ++ L K G+V++VRG GG L R Q I D++ A +E Sbjct: 2 ADIAERQEISLSYLEQLFGKLRKGGLVKSVRGPGGGYLLSRIPQQTRISDIILAVDEPIQ 61 Query: 88 VAECFASHKIDCPLV-GSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 C C G C + + N + L+ S+ + R Sbjct: 62 TTRCSPGSPAGCHNNKGRCLTHDLWEELGNQIYLYLSSVSLADVCERR 109 >gi|260063768|ref|YP_003196848.1| BadM/Rrf2 family transcriptional regulator [Robiginitalea biformata HTCC2501] gi|88783213|gb|EAR14386.1| transcriptional regulator, BadM/Rrf2 family protein [Robiginitalea biformata HTCC2501] Length = 135 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A D P +I++IA IS+ FL IL L K G + + +G+ Sbjct: 2 LSKKTKYGLKALTYLAAQKDREPVQIAEIARHENISQKFLESILLTLRKNGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + V++ E + C F DCP +C + ++ ++ Sbjct: 62 GGYYLIKDPGEIRMTSVMRVLEGPIAMVPCVSLNFYEPCDDCPDESACSVHKLMLMVRDS 121 Query: 118 FFDVLTQYSIECLV 131 V +++ V Sbjct: 122 ALAVYRNHTLADFV 135 >gi|68171749|ref|ZP_00545098.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str. Sapulpa] gi|67998829|gb|EAM85532.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str. Sapulpa] Length = 524 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y + ++ A + P R+S IA + +SE +L +I+ L K G++ Sbjct: 1 MLITTRLRYAVMFMVKLAQEYYTLKGSTQPKRMSHIANSQSLSEGYLEQIIVKLKKQGLI 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRK 113 + +G GG L + + IT+ ++++ E+ + C +H I C C ++ Sbjct: 61 NSTKGPGGGYSLNKSPNSITLNLILESIGENIKITRC-KNHLIGCLSNNARCITHNLWDN 119 Query: 114 ALNAFFDVLTQYSIECLVRNR 134 N L S+E ++ N Sbjct: 120 IGNHIKKYLNSISLEDILNNN 140 >gi|332284501|ref|YP_004416412.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] gi|330428454|gb|AEC19788.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7] Length = 164 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 2/132 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG VL + A + S +A + + + KIL+ L + +V + RG R Sbjct: 3 RISKIIDYGTLVLTHMAGSPERMFSASDLASTLGLGQPTVSKILKLLGQHELVTSSRGAR 62 Query: 62 GGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA QI++ D++ A EE F + EC A C + C + S ++ Sbjct: 63 GGYILSRPASQISVADIIDALEEQPFGLTECTALPGA-CSVEAGCHIRSNWQRINAIVRH 121 Query: 121 VLTQYSIECLVR 132 L + S+ ++R Sbjct: 122 TLEEISVADMIR 133 >gi|241767055|ref|ZP_04764836.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] gi|241362402|gb|EER58363.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] Length = 142 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T R + + A+ + P +S I+ S L ++ L KAG+V++ RG Sbjct: 1 MRITTRGQLAVSAMTDLAMRQHKGPVALSTISARQGTSLSHLEQLFSALKKAGLVDSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG L R +Q+++ D+V A E E +T L A NA Sbjct: 61 PGGGYALARKPEQVSVADIVVAVENQRVAEEAATRGPAQMV-----SMTGSLWTAFNAQV 115 Query: 119 FDVLTQYSIECLVRNR 134 L ++ LV + Sbjct: 116 LAYLQSVTLRDLVAEQ 131 >gi|118464782|ref|YP_880680.1| StaS protein [Mycobacterium avium 104] gi|118166069|gb|ABK66966.1| StaS protein [Mycobacterium avium 104] Length = 159 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + +Y +R ++ A D + +A+A I FL IL L +V + RGR Sbjct: 1 MSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP I+I DV++ + + + LT V R + V Sbjct: 61 GGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMRLV 119 Query: 122 LTQYSIECLV 131 L + ++ + Sbjct: 120 LEETTLADVA 129 >gi|114776741|ref|ZP_01451784.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1] gi|114552827|gb|EAU55258.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1] Length = 151 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 1/129 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK TDYGI +L A +++AE I + KILQ L+ ++ + RG R Sbjct: 3 RLTKLTDYGILLLTRMASSEQLRFTATELAEMTHIPMPTVSKILQMLLHENLLSSTRGAR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R A QI I DV+ E S + EC + C C ++ ++ A Sbjct: 63 GGYQLTRDASQINIRDVINVFEGSIALTECNIEGSV-CDQHDVCSTSNNWKRINIAVGQA 121 Query: 122 LTQYSIECL 130 L S+ + Sbjct: 122 LEGISLADM 130 >gi|313898036|ref|ZP_07831575.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] gi|312957064|gb|EFR38693.1| putative HTH-type transcriptional regulator CymR [Clostridium sp. HGF2] Length = 130 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 5/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ Y R L+ AI+ D+P I++I ISE +L I L KAG + + RG Sbjct: 1 MKLSTKSRYAARCLIDLAIYGKDHPLSITEIGAREEISERYLELIFATLKKAGFIASARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L RP + ITI D++ E + + + + V + Sbjct: 61 SQGGYQLIRPIESITIYDIIALMETNTSIVNTQDERDP----MKRILMREVWSLIDDNLK 116 Query: 120 DVLTQYSIECL 130 L+ +I L Sbjct: 117 AYLSDLTIAEL 127 >gi|299143924|ref|ZP_07037004.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518409|gb|EFI42148.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 137 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY R+ Y A + +IA ISE F +IL+ L AGI RG Sbjct: 1 MRITQETDYAFRICGYLAQNEGQVIGAPKIASEKKISERFTLRILRKLNLAGITTAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKAL 115 GG L +P ++IT+ D++ A + V +C S C VG C + L + Sbjct: 61 AGGYLLNKPKEEITLYDIIVAVDGPIIVNKCIDSECGRVSDSPCGFVG-CKFHNKLAEVQ 119 Query: 116 NAFFDVLTQYSIECLVRN 133 D+ +++ + Sbjct: 120 QTIVDMFKDATLDKFMER 137 >gi|294793415|ref|ZP_06758560.1| Rrf2 family protein [Veillonella sp. 6_1_27] gi|294455846|gb|EFG24211.1| Rrf2 family protein [Veillonella sp. 6_1_27] Length = 143 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKVTGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 GG L R +I++LDV++A E ++ C S C G C + + + Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 + L + + L + + I Sbjct: 119 QLINQLEAVNFKTLAQRKQLI 139 >gi|54022226|ref|YP_116468.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54013734|dbj|BAD55104.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 176 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 26/159 (16%) Query: 1 MHLTKRTDYGIRVLMYCA-------------------------IHNDYPNRISQIAEACC 35 MH+T + DY +R L+ A + + IA A Sbjct: 1 MHITAKVDYAVRTLLEIARLTPAEITPATAGCVAEPGVRPDAGVAAPAKVKAETIAAAQQ 60 Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 I L +L L +A +V + RG GG RL RPA QI++ DV++A E Sbjct: 61 IPPKVLETVLSDLRRAELVTSRRGPDGGYRLARPAAQISVADVIRAIEGPLASVRGQRPE 120 Query: 96 KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + + L V VL SIE + +R Sbjct: 121 DVRYEGMAE-PLQRVWIALRVNIRAVLENVSIEQIAADR 158 >gi|154250436|ref|YP_001411261.1| BadM/Rrf2 family transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154372|gb|ABS61604.1| transcriptional regulator, BadM/Rrf2 family [Fervidobacterium nodosum Rt17-B1] Length = 141 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE--ACCISELFLFKILQPLVKAGIVETVR 58 M +T +++Y I++++ A+ N +I + + F KIL L + GI+ R Sbjct: 1 MAITMKSEYAIKIMILIAVENKR-VNAREIVKKCRERLPLEFAEKILADLARNGILHAYR 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG L + D+IT+ DVV + + +CF SC + + L Sbjct: 60 GRGGGYELAKKLDEITVYDVVSSVDNPSDTIKCFVDINDKATSPESCTVNKIWESVLEKM 119 Query: 119 FDVLTQYSIECLVRN 133 ++L +++ L + Sbjct: 120 QEILKSITLKELTED 134 >gi|302344421|ref|YP_003808950.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641034|gb|ADK86356.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii DSM 2075] Length = 142 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H+++ + + Y A +IA SE L K++Q L KAG+V + RG Sbjct: 6 HISEAASLALHTMAYLAAEPGRKASTHEIARVMGASEAHLAKVMQRLGKAGLVVSQRGPG 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + +Q+++L+V A E C + C G C + +L K D Sbjct: 66 GGFTLAKTPEQVSLLEVYAAAEGQLGEVGCLLGQPV-C--GGHCIMGELLGKLSQEIKDY 122 Query: 122 LTQYSIECLVRN 133 + L Sbjct: 123 FANTKLGDLTAE 134 >gi|295135463|ref|YP_003586139.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda SM-A87] gi|294983478|gb|ADF53943.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda SM-A87] Length = 135 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L + A + P + S+IA++ IS FL IL L K+G + + +G+ Sbjct: 2 LSKKTKYGIKALTFIARQPERNPVQTSEIAKSENISLKFLESILLILRKSGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + I + +++ E + C + DCP +C + ++ + ++ Sbjct: 62 GGYYLIKEPEDIKMTAIIRVLEGPIAMVPCVSLNYYEKCEDCPDEQTCAVHKLMIQVRDS 121 Query: 118 FFDVLTQYSIECL 130 +VL + ++ L Sbjct: 122 TLNVLGENTLADL 134 >gi|83942219|ref|ZP_00954680.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. EE-36] gi|83846312|gb|EAP84188.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. EE-36] Length = 156 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPADRLVNLGDIATRQSISLPYLEQLFVKLRRADLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA I ++D++ A +E A + LT+ L + L+A Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + +V N Sbjct: 121 YVFLHQTRLSDVVANE 136 >gi|83955454|ref|ZP_00964085.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. NAS-14.1] gi|83840098|gb|EAP79273.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sulfitobacter sp. NAS-14.1] Length = 156 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPADRLVNLGDIAARQSISLPYLEQLFVKLRRAELVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA I ++D++ A +E A + LT+ L + L+A Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + +V N Sbjct: 121 YVFLHQTRLSDVVANE 136 >gi|15807194|ref|NP_295923.1| hypothetical protein DR_2201 [Deinococcus radiodurans R1] gi|6460004|gb|AAF11750.1|AE002053_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 155 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ Y + L + + + +I+++ I +L +IL L GIV++ +G Sbjct: 1 MRLSATDVYAFQALGFLGTQDAERWVPSEEISDSTGIHRPYLVRILAALSAKGIVKSKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117 GG L R I++ +VV+A + C + + C G C + V + +A Sbjct: 61 IGGGYALARKPRLISLCEVVRAVDGPVAPLSCISLNWHEPCAEEGRCHARATVYTRMRDA 120 Query: 118 FFDVLTQYSIECLV 131 VL ++S+E LV Sbjct: 121 MLGVLQEFSVEDLV 134 >gi|330467835|ref|YP_004405578.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810806|gb|AEB44978.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora maris AB-18-032] Length = 151 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R+DY +R ++ A + + + +A + I FL IL L +AG++ + RG Sbjct: 1 MYVSARSDYAVRAMLAMAQQHPALVKAAALAASQDIPYSFLQGILLDLRRAGLLHSARGS 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L R ++IT+ DV++AT + V GL V + A Sbjct: 61 DGGYALTRAPEEITVGDVLRATGGPLTTVRGAPAEVATYHGVAV-GLGEVWQSVHRAIER 119 Query: 121 VLTQYSIECLV 131 V+ + S+ L+ Sbjct: 120 VVDRSSLADLL 130 >gi|294795234|ref|ZP_06760368.1| Rrf2 family protein [Veillonella sp. 3_1_44] gi|294454026|gb|EFG22401.1| Rrf2 family protein [Veillonella sp. 3_1_44] Length = 143 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEHELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 GG L R +I++LDV++A E ++ C S C G C + + + Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 + L + + LV+ I Sbjct: 119 QLVNQLEAVNFKNLVQREQLI 139 >gi|126728568|ref|ZP_01744383.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sagittula stellata E-37] gi|126710498|gb|EBA09549.1| iron-sulfur cluster assembly transcription factor IscR, putative [Sagittula stellata E-37] Length = 154 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ ++ D + +++ +S +L ++ L +AG+VE+VRG Sbjct: 1 MKLSTKGRYAMVALVDISLQGCDDLVTLGDVSKRQDLSLPYLEQLFVKLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL + I ++D++ A +E+ A + L+++L ++L+A Sbjct: 61 PGGGYRLAKSPSDIRVVDILAAVDETVDAMHKGAGASGGLSGSKAQSLSNMLWQSLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V Sbjct: 121 YVFLHQTRLSDVVER 135 >gi|256827446|ref|YP_003151405.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] gi|256583589|gb|ACU94723.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum DSM 15641] Length = 167 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + ++ + LMY + + I +AE IS +L K L KA IV + G Sbjct: 1 MKFSISIEHALHCLMYMVDVEENKSIGIRDLAEFQGISASYLSKTFTRLAKAHIVLSSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTS 109 +GG RL R + I+ D+V+A E C +D C ++ Sbjct: 61 VKGGYRLARTPEAISFWDIVEAIEGKDPFFRCQEVRFGSPVLKELGALDANDKSPCLISG 120 Query: 110 VLRKALNAFFDVLTQYSIECL 130 V+ + L++ ++ L Sbjct: 121 VMHQGEAEMKRYLSKKTLRWL 141 >gi|332284622|ref|YP_004416533.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7] gi|330428575|gb|AEC19909.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7] Length = 168 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + I + A + + + +AE +S +L K LQ L AGIV T+ G Sbjct: 1 MKLGDGVEQAIHSVTMLAGLSSSGVLSAAALAEFHGVSASYLLKHLQALSGAGIVHTLPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113 +GG RL R +IT+LD+V A E S C + L C + + + + Sbjct: 61 PKGGYRLARQPAKITLLDIVLAVEGSSPAFRCNEIRRRGPNPPSSSMLTKPCSINAAMLR 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A A+ L + SI ++ S++ Sbjct: 121 AEQAYRAELRRVSIADILSEVSAM 144 >gi|256827284|ref|YP_003151243.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583427|gb|ACU94561.1| rrf2 family protein, putative transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 170 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+R DY R+L H D +++I+E I F I LV+AG V TVRG Sbjct: 1 MELTRRCDYACRILRSAYRHRDRFVSVAEISEEEEIPYAFARTIQHDLVQAGYVRTVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG++L Q+T+LDV+ A + V+ C A + C C + + A + + Sbjct: 61 HGGLQLAIDLSQVTVLDVLHALQGEVTVSACAADPQ-SCSKSEGCRFNQLWQVA-DKMLN 118 Query: 121 VL-TQYSIECL 130 L ++ + Sbjct: 119 TLFDSVTLSDM 129 >gi|254877128|ref|ZP_05249838.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843149|gb|EET21563.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 174 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR Sbjct: 35 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 94 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F Sbjct: 95 FGGVSISQATYNINLSTIVKELE-PMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 153 Query: 121 VLTQYSIECLVR 132 L+ Y + Sbjct: 154 RLSDYRFIDICN 165 >gi|241668595|ref|ZP_04756173.1| putative transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 140 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR Sbjct: 1 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F Sbjct: 61 FGGVSISQATYNINLSTIVKELE-PMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119 Query: 121 VLTQYSIECLVR 132 L+ Y + Sbjct: 120 RLSDYRFIDICN 131 >gi|261597140|gb|ACX85433.1| putative transcriptional regulator [Arthrobacter sp. NyZ415] Length = 158 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ ++ I + + D S+ A +S +L K +Q L + G+V +++G Sbjct: 1 MKLSGGVEWAIHCCVVLS-RMDGAVPASKFAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L RPA+QI+ILDVV+A E + C + DC + C + + Sbjct: 60 AGGYVLTRPAEQISILDVVQAVEGQQPLFVCTEIRQRGPLGTPPEDC--LTPCPIAKAMM 117 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A A+ + L + +I L Sbjct: 118 TAEAAWREALREVTIGDLAHQ 138 >gi|291531113|emb|CBK96698.1| rrf2 family protein (putative transcriptional regulator) [Eubacterium siraeum 70/3] Length = 135 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T TDY IR++ + A + D I+E + + F KIL+ L AGIV + +G Sbjct: 1 MHITLETDYAIRIVDFMAKN-DGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117 +GG L R ++++ DVV+A E+++ + C H +C + C + + Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEDTYMFSRCLDGH-YNCNRAENGLPCNYRIAFARISDI 118 Query: 118 FFDVLTQYSIEC 129 D L + + + Sbjct: 119 VCDELKKLTFDD 130 >gi|56551012|ref|YP_161851.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761404|ref|ZP_04759492.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56542586|gb|AAV88740.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374311|gb|EER63808.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 145 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 1/126 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ T Y + L ++ IAE I +L KIL L +AG++ RG+ G Sbjct: 4 ISQSTGYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+RL RP + I++L++VKA + + CF C C + S K L Sbjct: 64 GLRLNRPPETISLLEIVKAIDGKDWGCGCFLGL-PGCSNEHPCPMHSFWLKTRPVIVKQL 122 Query: 123 TQYSIE 128 +++ Sbjct: 123 ENMTLD 128 >gi|325284831|ref|YP_004264293.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] gi|324316546|gb|ADY27658.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] Length = 146 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 3/142 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ +Y +R + A + +Q+A + +L K+LQ L +AG+++ +RG+ G Sbjct: 2 FSQTAEYALRAAVTLAEAGES-LSTAQLAGRTQVPAQYLSKVLQQLHRAGLLQALRGKYG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RL RP ITILDVV A + + C C L + +AL L Sbjct: 61 GYRLARPPQDITILDVVNAVDPLQRIRHCPLGRPAHAH--ALCPLHRQMDQALAQIEQTL 118 Query: 123 TQYSIECLVRNRSSIKKIFNAG 144 ++ ++ ++ + G Sbjct: 119 GAQTLAAMLELGQPGPELLHLG 140 >gi|218665081|ref|YP_002427593.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517294|gb|ACK77880.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 175 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y ++ L+Y A P I++ + +L KILQ L K G++++ +G Sbjct: 14 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 73 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L A Q+ ILD+++ E F C K C +C + + + Sbjct: 74 RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 132 Query: 120 DVLTQYSIECLVR 132 D+L + +I + Sbjct: 133 DLLGRQTIASMAE 145 >gi|257452761|ref|ZP_05618060.1| hypothetical protein F3_06819 [Fusobacterium sp. 3_1_5R] gi|257466870|ref|ZP_05631181.1| hypothetical protein FgonA2_05470 [Fusobacterium gonidiaformans ATCC 25563] gi|315918018|ref|ZP_07914258.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059302|ref|ZP_07923787.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684978|gb|EFS21813.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313691893|gb|EFS28728.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 137 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L+Y + + D ++I+E I LF +IL+ + KAG++ +G Sbjct: 1 MRLKNEVEYVFRILLYLSKYGKDRVISSTEISEKEQIPHLFSLRILKKMEKAGLLSIQKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + IT+ ++ E V +C + K G C + + F Sbjct: 61 AKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVSDPKSCSLRGGRCSVHRAMALIEKEFI 120 Query: 120 DVLTQYSIECLVRNR 134 + L +Y+ + L Sbjct: 121 EHLAKYNFQDLSDEN 135 >gi|146299648|ref|YP_001194239.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154066|gb|ABQ04920.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium johnsoniae UW101] Length = 137 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + Y ++ L+Y A ++ + +R +IA+ I + FL +IL L + V + +G+ Sbjct: 2 LSHKAKYALKALLYLAEQDENHISRTVEIADGANIPKKFLEQILLDLKRGRFVSSKQGKF 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + IT+ ++ + + + + C F DC C L L + Sbjct: 62 GGYYLIKSKNDITLAEIHRLFDGAIALLPCASLNFYEPCSDCKTESECSLRHGLMLIRDK 121 Query: 118 FFDVLTQYSIECLVRN 133 + +I LV+ Sbjct: 122 TLKAMEGITIASLVKK 137 >gi|311900466|dbj|BAJ32874.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae KM-6054] Length = 167 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 13/143 (9%) Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M ++ ++ + + A P +++A +S +L K+LQ L +AG++ Sbjct: 1 MRTSEGVEWALHCCLTLVWVGGAEAAPEPVPSARLAAMFELSPTYLNKVLQRLTRAGLLT 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--------CGL 107 +V G RGGVRL R ++IT++DVV A E + C + VG+ CG+ Sbjct: 61 SVSGPRGGVRLARAPERITVMDVVAAVEGPDPLFACAEIRQRGASAVGAGPREFARPCGV 120 Query: 108 TSVLRKALNAFFDVLTQYSIECL 130 +R+A A+ L+ ++ L Sbjct: 121 AGAMRRAELAWRRELSAQTVADL 143 >gi|271970444|ref|YP_003344640.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513619|gb|ACZ91897.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 181 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ RT Y +R A P +IA + I FL IL L +AG++ + RG Sbjct: 1 MRISARTQYALRAATELAAAPPGPVPAEKIAVSQNIPRRFLDNILLQLRRAGLIHSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA++IT+ DV+ E + ++ + PL + S+LR+ Sbjct: 61 DGGYWLARPAEEITLADVIMVVEGNPEHSQHGGYPGVAGPLAD---VWSLLREHEETL-- 115 Query: 121 VLTQYSIECLVRN 133 LT+ ++ + ++ Sbjct: 116 -LTEITLAHITKD 127 >gi|291542545|emb|CBL15655.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus bromii L2-63] Length = 135 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y + VL+ A + + + +IAE IS+ ++ IL+ LV ++E V+G Sbjct: 1 MLISSKGRYTLYVLVDLAKNGQNRYIPLKEIAERQNISKKYMEGILKTLVDRNLLEGVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + ++ ++++ TE C + C + SC + ++ N Sbjct: 61 KGGGYKLTKEPKDYSLGEILRLTEGDLASVPCTSKTHEHCNHMESCPSHPIWQQLDNLIN 120 Query: 120 DVLTQYSIECLVRNR 134 + L ++ L+ N Sbjct: 121 NYLDSVTLANLLNNE 135 >gi|227874364|ref|ZP_03992548.1| possible transcription regulator [Oribacterium sinus F0268] gi|227839772|gb|EEJ50218.1| possible transcription regulator [Oribacterium sinus F0268] Length = 140 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +++++ A HN + +IA ISE +L I++ LVK ++ +RG Sbjct: 1 MLISTKGQYALQLMVDLAEHNGQGYIPLKEIAARQDISEKYLESIVKVLVKKELLLALRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L RP + ++L+++ A E S + +G+C V ++ Sbjct: 61 KGGGYKLKRPVAEYSLLEILTALEGSLSPVSDLEKRRGS---LGACKTYPVWKELDRMIQ 117 Query: 120 DVLTQYSIECLV 131 + + ++ L Sbjct: 118 EYFQEKTLLELA 129 >gi|224372917|ref|YP_002607289.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola AmH] gi|223589916|gb|ACM93652.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola AmH] Length = 138 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T Y + L+ + D P ++ +AE + + FL K+LQ L + G V++ +G Sbjct: 1 MLFTKSTAYTLHALVELSKF-DKPVDVTHLAEITELPKPFLAKLLQTLSRKGFVKSFKGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 GG L + I I+D+ + E+ + +S DC + C + F Sbjct: 60 HGGFILSKEPKDIKIIDIFRVMEDKNSLVFYCSSDPDDCMRGRANICSIRPFFAFLEEEF 119 Query: 119 FDVLTQYSIECLVRNRSS 136 ++ Y++E ++R +S Sbjct: 120 LKIVQNYTLEDVIRMKSG 137 >gi|34557102|ref|NP_906917.1| hypothetical protein WS0691 [Wolinella succinogenes DSM 1740] gi|34482817|emb|CAE09817.1| LIN1550 PROTEIN [Wolinella succinogenes] Length = 137 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + YG+ L Y ++ P +IS+I++ I + +L +IL L KAG ++++RG + Sbjct: 4 ISTKGIYGLGALYYLTLNLHKPSIQISEISQNTNIPQNYLEQILANLKKAGFLKSIRGPK 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L P +QI + D+++A E EC + L A + + Sbjct: 64 GGYALAMPPEQIIVYDILEALEGGLCAIECRTDIE---------ALKLFWEDAGSKVRQI 114 Query: 122 LTQYSIECLVRNRSSIKK 139 S++ L+R I++ Sbjct: 115 F-SLSLKDLLRYEEMIQR 131 >gi|198284912|ref|YP_002221233.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249433|gb|ACH85026.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 162 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y ++ L+Y A P I++ + +L KILQ L K G++++ +G Sbjct: 1 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L A Q+ ILD+++ E F C K C +C + + + Sbjct: 61 RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 119 Query: 120 DVLTQYSIECLVR 132 D+L + +I + Sbjct: 120 DLLGRQTIASMAE 132 >gi|86742682|ref|YP_483082.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3] gi|86569544|gb|ABD13353.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3] Length = 177 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ ++ + A D + + Q+A + +L K LQ L KAG+V +V G Sbjct: 1 MRLSQGIEWALHCCHALAEAPDGSSLPVQQLAALHGGNPAYLAKHLQALSKAGVVVSVLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------IDCPLVGSCGLTSVLRK 113 RGG RL RPADQI +LDVV A E S V C + C + + + Sbjct: 61 PRGGYRLGRPADQIRLLDVVDAIEGSSPVFLCTEIRQRGPAALPPANYRAPCAIAAAVSS 120 Query: 114 ALNAFFDVLTQYSIECLV 131 A +A+ L +I +V Sbjct: 121 AEDAWRQALASTTIADIV 138 >gi|319795510|ref|YP_004157150.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus EPS] gi|315597973|gb|ADU39039.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus EPS] Length = 181 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + + + ++ A+H P ++ I+ +S +L + L + +VE+ RG Sbjct: 1 MRLTTKGRFAVTAMIDIALHGRSGPVTLASISLRQRVSLSYLELLFAKLRRNDLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R A I++ D+V + E+ D G C + + Sbjct: 61 PGGGYSLSRKAALISVADIVLSIEDHGNETT-RRRAGADVDDSGRCEVEELWASVNLRAV 119 Query: 120 DVLTQYSIECLVRNRSS 136 + L S++ LV + + Sbjct: 120 EFLKSISLQSLVDEQKA 136 >gi|163857206|ref|YP_001631504.1| putative transcriptional regulator [Bordetella petrii DSM 12804] gi|163260934|emb|CAP43236.1| putative transcriptional regulator [Bordetella petrii] Length = 160 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +++ ++ + + A ++ +++A A + +L K LQ LVKAGI+ + Sbjct: 1 MKMSEGVEWALHCCLTLAWLDNDGASVPTARLAAAFELPPAYLNKCLQLLVKAGILVSTA 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVL 111 G +GG RL R +IT+LDVV A E C + V CG+ + Sbjct: 61 GVKGGFRLARAPARITLLDVVTAIEGPEGAFRCAEIRQRGAGASASPREFVRPCGIAVAM 120 Query: 112 RKALNAFFDVLTQYSIECLVR 132 R+A A+ L ++ L+ Sbjct: 121 RRAETAWRRELAAQTVADLLD 141 >gi|260753319|ref|YP_003226212.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552682|gb|ACV75628.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 145 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 1/126 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ T Y + L ++ IAE I +L KIL L +AG++ RG+ G Sbjct: 4 ISQSTGYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+RL RP + I++L++VKA + + CF C C + S K L Sbjct: 64 GLRLNRPPETISLLEIVKAIDGKDWGCGCFLGL-PGCSNEHPCQMHSFWLKTRPVIVKQL 122 Query: 123 TQYSIE 128 +++ Sbjct: 123 ENMTLD 128 >gi|319762538|ref|YP_004126475.1| transcriptional regulator, rrf2 family [Alicycliphilus denitrificans BC] gi|330824556|ref|YP_004387859.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117099|gb|ADU99587.1| transcriptional regulator, Rrf2 family [Alicycliphilus denitrificans BC] gi|329309928|gb|AEB84343.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus denitrificans K601] Length = 180 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R + + A+H+ +P + I+ IS +L I L +AG+V +VRG Sbjct: 1 MRLTTRGKLAVTAITDVALHSHGHPVALPGISVRQGISLSYLEDIFSALRRAGLVHSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RP +++ ++V A+E+ A A + P + + Sbjct: 61 PGGGYMLTRPPQSLSVAEIVMASEKYMAHANDKAGNAAPSPSSDD-MTADLWASFHSRIL 119 Query: 120 DVLTQYSIECLVRNRS 135 + L ++ L+ Sbjct: 120 EYLQSITVADLLAQHR 135 >gi|260221649|emb|CBA30424.1| HTH-type transcriptional regulator iscR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 176 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 8/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R + I ++ A+ + P + IA IS +L ++ L + G+VE+ RG Sbjct: 1 MRLSTRGRFAITAMIDLALRESGQPVPLQDIALRHRISLSYLEQVFAKLRQNGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L D IT+ D++ A EE + + D + + Sbjct: 61 PGGGYSLGFRGDSITVADIIGAIEEKEESSRETSQSAQD-------MTRDLWAALQSTVV 113 Query: 120 DVLTQYSIECLVRNRSS 136 + ++ L + + Sbjct: 114 AHMRTITLRSLAEEQRA 130 >gi|282855397|ref|ZP_06264720.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] gi|282586777|gb|EFB92022.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter piscolens W5455] Length = 151 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R YG+R ++ + + P +S +A+A +S+ +L +++ L +AGI+ + R Sbjct: 1 MKVSTRAHYGLRAVIAISEMARSGLPVSVSDVAKAENLSDTYLEQLVSKLRRAGILRSYR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKA 114 G RGG L R D IT+ +V+KA E EC C L C + + Sbjct: 61 GARGGYELVRDPDTITVAEVLKAAGEQIIFPECTTPEG--CELAHQRGHVCASSHFWQNL 118 Query: 115 LNAFFDVLTQYSIECLVRNRSS 136 + + + ++ L+RN Sbjct: 119 NSMVNKIAEETTVGSLIRNYEE 140 >gi|57167906|ref|ZP_00367046.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter coli RM2228] gi|305432068|ref|ZP_07401235.1| rrf2 family protein [Campylobacter coli JV20] gi|57021028|gb|EAL57692.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter coli RM2228] gi|304445152|gb|EFM37798.1| rrf2 family protein [Campylobacter coli JV20] Length = 136 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+Y A H + P + +A I + FL KILQ L K ++++ +G Sbjct: 1 MLFTKASEYALLSLIYIA-HKENPQDVDSLALELNIPKSFLAKILQTLAKDNLLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117 +GG L + Q +I ++V + E + V EC CP +C L +L N Sbjct: 60 KGGFALIKEPSQYSIKEIVNSAEKKEVSVFECSGGV---CPNNKEENCTLMPMLVNLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 + L ++ ++ + Sbjct: 117 VDEFLDSLTLADIMNHN 133 >gi|260574649|ref|ZP_05842652.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] gi|259023066|gb|EEW26359.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2] Length = 153 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ +D +++I+ IS +L ++ L +A +VE VRG Sbjct: 1 MKLSTKGRYAMVALADLALARDDDLVSLAEISRRQDISLAYLEQLFVKLRRASLVEAVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R D I + ++++A EE+ A + LT+ L + L+A Sbjct: 61 PGGGYRLARSPDAIRVSEILEAVEETVSAMHSGAGASGGISGSRAQSLTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + ++ N Sbjct: 121 YVFLHQTRLSDVIGNE 136 >gi|56551318|ref|YP_162157.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241760972|ref|ZP_04759061.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56542892|gb|AAV89046.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374591|gb|EER64052.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 135 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ TDY + VL H +AE + + K++ L A ++ ++R Sbjct: 1 MRLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L RPA++IT+ DVV+A E ++ C + + C CG+ + Sbjct: 61 GMGGGFTLARPAEEITLADVVEAIEGPIAMSSC-DNKESLCKFSAECGMRPRWPEVNRTV 119 Query: 119 FDVLTQYSIECLV 131 + L S++ L Sbjct: 120 KNALESISLKSLA 132 >gi|29654658|ref|NP_820350.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 493] gi|154705843|ref|YP_001424796.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111] gi|161829979|ref|YP_001597203.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331] gi|29541926|gb|AAO90864.1| rrf2 family protein [Coxiella burnetii RSA 493] gi|154355129|gb|ABS76591.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111] gi|161761846|gb|ABX77488.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331] Length = 153 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ DY V+ A +QIA +S + K+L+ L + +V + RG Sbjct: 3 KISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGVN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R I+I D++ A + + EC + C CG+ + FDV Sbjct: 63 GGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFDV 121 Query: 122 LTQYSIECLVRNRSSIKKI 140 L ++ + + +K+I Sbjct: 122 LDSLNLADM--QKPLLKRI 138 >gi|126726563|ref|ZP_01742404.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] gi|126704426|gb|EBA03518.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] Length = 180 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A I +S I+ IS +L ++ L +AG+VE+VRG Sbjct: 28 MKLSTKGRYAMVALADLACITAPRLTSLSDISRRQDISLPYLEQLFVKLRRAGLVESVRG 87 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL + +I + D++ A +E+ + + + L + L+A Sbjct: 88 PGGGYRLAKAPAEIRVSDILGAVDETVSAMHQGGGASGGSSGSKAQSMANRLWENLSANV 147 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + ++ N Sbjct: 148 YVFLHQTRLSDVIENE 163 >gi|167750933|ref|ZP_02423060.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702] gi|167656112|gb|EDS00242.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702] gi|291557420|emb|CBL34537.1| rrf2 family protein (putative transcriptional regulator) [Eubacterium siraeum V10Sc8a] Length = 135 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T TDY IR++ + + ND I+E + + F KIL+ L AGIV + +G Sbjct: 1 MHITLETDYAIRIVDFM-VKNDGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117 +GG L R ++++ DVV+A E ++ + C H +C + C + + Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEGTYMFSRCLDGH-YNCNRAENGLPCNYRIAFARISDI 118 Query: 118 FFDVLTQYSIEC 129 D L + + + Sbjct: 119 VCDELKKLTFDD 130 >gi|86609933|ref|YP_478695.1| transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558475|gb|ABD03432.1| transcriptional regulator, putative [Synechococcus sp. JA-2-3B'a(2-13)] Length = 151 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y I+ L+ A + + + IA+ I +L K+L L +AG+V + RG Sbjct: 1 MRLTTRATYSIKALLDLAMLGSGQMASVRAIAQRQGIPAPYLEKLLIELRQAGLVCSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 +GG RL R +I I ++ A ES + E + + ++ ++ Sbjct: 61 AQGGYRLARAPRRIPISAILAAVGESLDPLVESSDATAVYSAERLDWVTEALWKRIARQV 120 Query: 119 FDVLTQYSIECL 130 VL + ++E L Sbjct: 121 QQVLEETTLEDL 132 >gi|329114662|ref|ZP_08243421.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum DM001] gi|326696142|gb|EGE47824.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum DM001] Length = 160 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ DY I +L+ + +A + E + K+L+ L G V + RG + Sbjct: 9 KLSRLADYAIVILVKLGEQ-EGVVTSPTLAAITGVPEPTVAKVLKVLSAHGFVLSQRGAK 67 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL R I++ V+ A + + C + C SCGL A Sbjct: 68 GGYRLARHLADISVASVITAVDGKIALTACVDGGE--CDTGVSCGLCGSWDTINQAIRTT 125 Query: 122 LTQYSIECL 130 L S+E + Sbjct: 126 LEGISLESM 134 >gi|282849988|ref|ZP_06259370.1| Rrf2 family protein [Veillonella parvula ATCC 17745] gi|282580177|gb|EFB85578.1| Rrf2 family protein [Veillonella parvula ATCC 17745] Length = 143 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 GG L R +I++LDV++A E ++ C S C G C + + + Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 + L + + L + I Sbjct: 119 QLINQLEAVNFKTLAQREQLI 139 >gi|327191462|gb|EGE58484.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 162 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +A +V+T G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL R + +I LD+V+A E C C G C + ++ + Sbjct: 61 PSGGYRLARASSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136 A A+ + L + + LV + S Sbjct: 121 ADEAWRETLRRVRLSDLVDSLSQ 143 >gi|171911244|ref|ZP_02926714.1| hypothetical protein VspiD_08720 [Verrucomicrobium spinosum DSM 4136] Length = 137 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 9/136 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++K+ +Y +R ++ + I +AE I FL +IL L K GI+ + RG Sbjct: 1 MKISKKAEYALRAVLAMSRSATGTIFSIQSLAEEERIPLKFLEQILLILRKGGIMHSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L RPA +IT+ ++++ + + S GLTS ++ Sbjct: 61 AGGGYQLVRPASRITVGEILELVDGPIELLPDGNSLSP--------GLTSAFQELQGEMQ 112 Query: 120 DVLTQYSIECLVRNRS 135 LT+ ++ +++ Sbjct: 113 AWLTKMTLADVMQREQ 128 >gi|291037439|ref|ZP_06568403.1| transcriptional regulator BadM/Rrf2 [Gluconacetobacter xylinus NBRC 3288] Length = 136 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ RTDY RVL++ A + D + I E IS L K++Q L AGIV+ RG Sbjct: 1 MRLSLRTDYAFRVLIHLACNPDSRVTVRNITELHGISHNHLVKVVQHLCHAGIVQGTRGG 60 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL A I + +++ E E C +S C L +C ++ +A++AF Sbjct: 61 TGGIRLAVSARNINVGHIMRLMETEKESPGACHSSGNNQCILGNACQFRHLIVQAVDAFM 120 Query: 120 DVLTQYSIECL 130 S+ L Sbjct: 121 AFSDGMSLLDL 131 >gi|317057079|ref|YP_004105546.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315449348|gb|ADU22912.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 149 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R +YGI L AI+ S I+E IS+ +L +I+ L + G V+ + Sbjct: 1 MKISTRVEYGIIALADIAINGANGKTVSSSDISERQDISQKYLEQIIISLRQGGFVKGQK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G RGG L RPA++I + +++ A + S E + +C L K + Sbjct: 61 GSRGGYMLSRPAEKIYLSEILNALDNSILADAYEESEENTAGMRNSVNCCL---WDKINS 117 Query: 117 AFFDVLTQYSIECLVRNRSS 136 Q ++ L+ Sbjct: 118 YMRSFTEQMTLADLIAGHKE 137 >gi|241205480|ref|YP_002976576.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859370|gb|ACS57037.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 162 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +A +VET G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL + I L++V+A E C C G C + ++ + Sbjct: 61 PSGGYRLAKTPSDINFLEIVEAVEGKARSFTCTNIRANNPCRPEGYCDSKPCAVARIMWE 120 Query: 114 ALNAFFDVLTQYSIECLV 131 A A+ D L + + LV Sbjct: 121 ADEAWRDTLRRVRLSDLV 138 >gi|297624973|ref|YP_003706407.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297166153|gb|ADI15864.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix DSM 17093] Length = 165 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ Y + L + I+EA ++ +L +IL L GI+ + +G Sbjct: 11 MRLSTTDIYAFQALGFLGTQPPGRWVGSDTISEATGVARPYLVRILAQLTAKGIIVSKKG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117 GG L R A I + DV++A + C + + + C C S V + +A Sbjct: 71 AGGGYALVREAHLINLRDVMRAIDGPVAPLSCVSLNWHVPCVEEARCHARSAVWERVRDA 130 Query: 118 FFDVLTQYSIECLVRN 133 L++ S+ L + Sbjct: 131 LLTALSEVSVADLAAD 146 >gi|269797540|ref|YP_003311440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Veillonella parvula DSM 2008] gi|269094169|gb|ACZ24160.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula DSM 2008] Length = 143 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116 GG L R +I++LDV++A E ++ C S C G C + + + Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118 Query: 117 AFFDVLTQYSIECLVRNRSSI 137 + L + + L + I Sbjct: 119 QLINQLEAVNFKTLAQREQLI 139 >gi|298248163|ref|ZP_06971968.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297550822|gb|EFH84688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 135 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ T+Y + +MY A+ + ++AE +S +L KIL LVKAGI+E+ G Sbjct: 1 MKYSQATNYALHTMMYFVALPVGSTIGVQRLAELQKLSPTYLSKILTKLVKAGIIESTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R ++ L+V+ A E + + H C + V+ +A Sbjct: 61 VNGGYRLTRNKADLSFLEVIHAIEGTATLFHDGLHHHE-------CLIQDVMTQAEQQME 113 Query: 120 DVLTQYSIECLV 131 D L + + LV Sbjct: 114 DYLKERKLIELV 125 >gi|307319940|ref|ZP_07599363.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306894480|gb|EFN25243.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] Length = 142 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Query: 11 IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ ++ + I++IA + + FL I+ L AG + + +G GG L RP Sbjct: 1 MKAMVDLVQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPGGGYALARP 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDVLTQY 125 A +I + V++ + C + DC +C + + +A D+L Sbjct: 61 ASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVRDAVADILDNM 120 Query: 126 SIECLVRNRSS 136 ++ + Sbjct: 121 TLAQFAASERE 131 >gi|154483669|ref|ZP_02026117.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC 27560] gi|149735579|gb|EDM51465.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC 27560] Length = 147 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+L+K++ YG+ L+ +IH+ + IAE IS +L I L +AGI+++++G Sbjct: 1 MNLSKKSRYGLTALIDLSIHSTKGHVSLISIAERNGISPQYLEHIFASLRRAGIIKSIKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L +IT+ +++A + ++ + S + P + ++ K + Sbjct: 61 AQGGYLLGDSPSRITVASIIEALDGAYRIEREEVSESEN-PRIALTIQNLIIDKINDRLD 119 Query: 120 DVLTQYSIECL 130 +VL ++ L Sbjct: 120 EVLENTTLADL 130 >gi|239834897|ref|ZP_04683225.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] gi|239822960|gb|EEQ94529.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum intermedium LMG 3301] Length = 156 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Query: 1 MH-LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MH LTK+ YG++ L + A +++IA IS+ FL IL L GI+ + + Sbjct: 1 MHMLTKKGKYGLKALAHLAALAPGESAFVAEIAARNNISKKFLDAILLELRNDGILRSKK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKA 114 G GG L +PA +ITI VV+ + C + DC +C + + Sbjct: 61 GPGGGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCDDCEDHRACQVRRSMLLV 120 Query: 115 LNAFFDVLTQYSIECLVRN 133 A VL ++E RN Sbjct: 121 REAIAGVLDTMTLEQFARN 139 >gi|325676175|ref|ZP_08155855.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325552959|gb|EGD22641.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 148 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R++M A +AE +S K++ L + G+V T R Sbjct: 1 MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ + ++ + + E V C CPL C L S LR A +AF Sbjct: 61 GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDK--PCPLRRGCRLRSSLRVAQDAF 118 Query: 119 FDVLTQYSIECLVR 132 + L ++ L Sbjct: 119 YTALDAMTVRDLAA 132 >gi|149202631|ref|ZP_01879603.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. TM1035] gi|149143913|gb|EDM31947.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. TM1035] Length = 153 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ A+ + I+ IS +L ++ L +A +V++VRG Sbjct: 1 MKLSTKGRYAMVALVDIALQPAGSVVTLGDISRRQDISLPYLEQLFVKLRRADLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I + D++ A +E+ A + +T+ L + L+A Sbjct: 61 PGGGYRLMRPASEIRVTDILAAVDETIDALHKGAGASGAASGSRAQSMTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + + N Sbjct: 121 YVFLHQTRLSDVAGN 135 >gi|262196471|ref|YP_003267680.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Haliangium ochraceum DSM 14365] gi|262079818|gb|ACY15787.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum DSM 14365] Length = 273 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T+ D R A + +A A I E + K+L+ LV+AG+V +VRG GG Sbjct: 77 TRAGDVAHR-----AGEGGTHQSVRALAAATGIPEPTVRKVLKTLVRAGVVGSVRGTHGG 131 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFFDVL 122 L RPA I++ +V A E V EC + C L C + ++ D L Sbjct: 132 YALARPASAISVAEVATAFEGPIAVTECASEETVGTCGLEDRCTVKGPWQRISEVIRDAL 191 Query: 123 TQYSIECL 130 S+ + Sbjct: 192 EGLSLAQM 199 >gi|257464248|ref|ZP_05628627.1| hypothetical protein FuD12_10461 [Fusobacterium sp. D12] gi|317061765|ref|ZP_07926250.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313687441|gb|EFS24276.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 136 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L+Y + + + ++I+E I LF +IL+ + KAG+V +G Sbjct: 1 MRLKNEVEYVFRILLYLSRYGKERIISSTEISEKEQIPHLFSLRILKKMEKAGLVSIQKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + IT+ ++ E V +C K G C + + F Sbjct: 61 AKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVRDPKSCSLRSGRCSVHRAMAVIEKEFI 120 Query: 120 DVLTQYSIECLVRNR 134 + L +Y+ + L Sbjct: 121 EHLAKYNFQDLSDEN 135 >gi|218291270|ref|ZP_03495246.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] gi|218238818|gb|EED06030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus acidocaldarius LAA1] Length = 125 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 11/124 (8%) Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ A +D P + IAE +SE +L +++ PL G V ++RG GG L R + Sbjct: 3 LVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRGAYGGYVLARHPRE 62 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I I DV+ A E + + GL + + A DVL+ +++ LV Sbjct: 63 IVIEDVLLALEGPITIVDEEIDD----------GLQVLWDRLREAIHDVLSSMTLQDLVE 112 Query: 133 NRSS 136 R Sbjct: 113 LRQG 116 >gi|116252972|ref|YP_768810.1| Rrf2 family transcriptional regulator protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257620|emb|CAK08717.1| putative Rrf2 family transcriptional regulator protein [Rhizobium leguminosarum bv. viciae 3841] Length = 162 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +A +VET G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL + I L++V+A E C C G C + ++ + Sbjct: 61 PSGGYRLAKTPSDINFLEIVEAVEGKARSFTCTNIRANNPCRPEGYCDSKPCAVARIMWE 120 Query: 114 ALNAFFDVLTQYSIECLV 131 A A+ D L + + LV Sbjct: 121 ADEAWRDTLRRVRLSDLV 138 >gi|121594035|ref|YP_985931.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42] gi|120606115|gb|ABM41855.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42] Length = 187 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 2/137 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R + + A+ + P + I+ IS +L I L +AG+V ++RG Sbjct: 1 MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RP ++++ D+V A+E+ A+ + G + + Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEKYMGGADDKGTDTGTASAPGE-MTAELWASFHSRVM 119 Query: 120 DVLTQYSIECLVRNRSS 136 + L ++ L+ R + Sbjct: 120 EYLQSITVADLLTQREA 136 >gi|212212264|ref|YP_002303200.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212] gi|212010674|gb|ACJ18055.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212] Length = 153 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ DY V+ A +QIA +S + K+L+ L + +V + RG Sbjct: 3 KISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGVN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R I+I D++ A + + EC + C CG+ + FDV Sbjct: 63 GGYQLARAPQSISIADIIAAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFDV 121 Query: 122 LTQYSIECLVRNRSSIKKI 140 L ++ + + +K+I Sbjct: 122 LDSLNLADM--QKPLLKRI 138 >gi|260753062|ref|YP_003225955.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552425|gb|ACV75371.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 135 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 MHL+ TDY + VL H +AE + + K++ L A ++ ++R Sbjct: 1 MHLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L RPA++IT+ DVV+A E ++ C + + C CG+ + Sbjct: 61 GMGGGFTLARPAEEITLADVVEAIEGPIAMSSC-DNKESLCKFSAECGMRPRWPEVNRTV 119 Query: 119 FDVLTQYSIECLV 131 + L S++ L Sbjct: 120 KNALESISLKSLA 132 >gi|90419967|ref|ZP_01227876.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336008|gb|EAS49756.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 139 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++R Y IR L A P + IA I FL IL L +AG++ ++RG RG Sbjct: 2 ISQRARYAIRSLRNIAPRA-APVSAAVIAVEEQIPRKFLEAILAELKQAGLLVSLRGARG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118 G RL RP +QI+ DV++ + +A C + DC V SC + L +A Sbjct: 61 GYRLARPGEQISFADVLRVVDGPLALAPCASRTAYRRCEDCRDVESCETRTALLAVRDAT 120 Query: 119 FDVLTQ 124 +L Sbjct: 121 AAILEG 126 >gi|167628038|ref|YP_001678538.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598039|gb|ABZ88037.1| putative transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 140 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR Sbjct: 1 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F Sbjct: 61 FGGVSISQATYNIKLSTIVKELE-PMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119 Query: 121 VLTQYSIECLVR 132 L Y + Sbjct: 120 RLNDYRFIDICN 131 >gi|153003770|ref|YP_001378095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027343|gb|ABS25111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. Fw109-5] Length = 155 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K TDY I +L + A + ++A + + K+ + L KAG+V + RGR Sbjct: 3 RMSKLTDYAIVLLAHLA-RSGRTLAAQELAARSGVPLPTVSKLCKELSKAGLVVSHRGRH 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RPA+ I++ ++V+A E + +C + K+ C + +C + A Sbjct: 62 GGYGLARPAELISVAEIVEALEGPIALTDCTSPAKVACGIEATCPAKASFDPVTRAIQGA 121 Query: 122 L 122 L Sbjct: 122 L 122 >gi|159184340|ref|NP_353521.2| hypothetical protein Atu0493 [Agrobacterium tumefaciens str. C58] gi|159139656|gb|AAK86306.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 167 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + I + A + + +AE +S +L K LQ L AGIV TV G Sbjct: 1 MKLGDGVEQAIHSVSMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQSLSNAGIVTTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 +GG RL R D+IT+LD+V A E C + PL G CG+ + + K Sbjct: 61 PKGGYRLARTTDKITLLDIVLAVEGPQPAFRCAEIRQRGPNPLPGRYFTKPCGINAAMLK 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A + L + SI ++ + Sbjct: 121 AEKVYRAELAKTSIADILGD 140 >gi|303228847|ref|ZP_07315660.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-134-V-Col7a] gi|303230326|ref|ZP_07317089.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-049-V-Sch6] gi|302515012|gb|EFL56991.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-049-V-Sch6] gi|302516467|gb|EFL58396.1| transcriptional regulator, Rrf2 family [Veillonella atypica ACS-134-V-Col7a] Length = 150 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 4/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + TDY R++++ A + + +AE I E FL KI++ L+ AGI+++ RG Sbjct: 1 MKLNQATDYAFRMILHMAMLPSGQKVTGGVLAEQEMIPERFLLKIMRSLIAAGIMKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L R I++LDV++A E ++ C C G C + + Sbjct: 61 VDGGFALNREPKDISMLDVIRAVEGDTYLQRCLYDVG-SCSKACMGQCAVNEAMSVVQAE 119 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142 + + + L I + N Sbjct: 120 LVRQMESVTFDKLAVREKEILETMN 144 >gi|300856563|ref|YP_003781547.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436678|gb|ADK16445.1| predicted transcription regulator [Clostridium ljungdahlii DSM 13528] Length = 137 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ +DYG RV++Y + + IA+ + FL K+L+ L +AGIV++ RG Sbjct: 1 MKITQESDYGFRVVLYLSNLGYGKKIEAKTIAKDQNVPLRFLLKLLRKLTQAGIVKSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118 GG L R + IT+ ++++A + ++ C + G CG+ + L K Sbjct: 61 VNGGYALNRMPEDITLRNIIEAIDGPIYLNRCLYDTEHCNAHKKGHCGVHNALSKVQGTL 120 Query: 119 FDVLTQYSIECLVRNR 134 + L + + ++ ++ Sbjct: 121 INELESINFKDIMEDK 136 >gi|312881138|ref|ZP_07740938.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] gi|310784429|gb|EFQ24827.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] Length = 152 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H ++ + ++ A + +AEA SE L K++Q L KAGI+ RG R Sbjct: 6 HFSEAASLAVHGVLLLAASGGEHRTVRSLAEAVGASEAHLAKVVQRLGKAGILSCTRGPR 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GGV L RPA +IT+L+V +A E C CP G+C +L + D Sbjct: 66 GGVFLARPAGEITLLEVYEAVEGPLDRGGCVLGRSA-CPF-GACLFGGLLERVSGEVRDF 123 Query: 122 LTQYSIECLVRNR 134 L ++E ++R Sbjct: 124 LAATTLEDFWKSR 136 >gi|283778130|ref|YP_003368885.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283436583|gb|ADB15025.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 142 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ +T+Y ++ A ++ P RI IA+ I FL +IL L AG+V++VR Sbjct: 1 MIVSAKTEYACIAMLELAARDERSEPVRIKDIADRHGIPSRFLVQILLQLKTAGLVQSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG +L P +IT+ V+ A + +S D P L + Sbjct: 61 GASGGYQLALPPREITLGTVMSAVDAQSARV--VSSLTSDSPTTRV--LHDRWQLVAEKQ 116 Query: 119 FDVLTQYSIECLV 131 ++L + ++ LV Sbjct: 117 RELLEEVTLADLV 129 >gi|291518758|emb|CBK73979.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio fibrisolvens 16/4] Length = 133 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + Y +RV++ + + + + IAE IS+ +L I++ LV G V+ V G+ Sbjct: 2 FSTKGRYALRVMIDLSQQNPEEYIPLKDIAERQDISKKYLEIIVKELVHGGFVKGVSGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R ++ ++ ++++ E S C A ++CP G C + + D Sbjct: 62 GGYQLTRKPEEYSVGEIIELMEGSLSPVACLADENMECPREGICKTLPMWTEFYMLERDF 121 Query: 122 LTQYSIECLVRN 133 + LV + Sbjct: 122 FYGKKLSDLVNS 133 >gi|170761689|ref|YP_001786255.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408678|gb|ACA57089.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] Length = 126 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M TK T+Y + ++ Y H+D + +A IS +L KIL LVKA I+++ G Sbjct: 1 MKYTKATNYALHIVAYIIKHDDGKHISLYPLANYFNISPSYLSKILTKLVKADIIQSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + + I++LDV+KA E + + C + K C + + + +A + Sbjct: 61 VNGGYILYKNKEDISLLDVIKAIEGNSSIFTCEMNEK------SECKIQNAISEAEHIME 114 Query: 120 DVLTQYSIECLV 131 L I ++ Sbjct: 115 TYLKNKKIFEII 126 >gi|308371930|ref|ZP_07426693.2| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis SUMu004] gi|308373100|ref|ZP_07431000.2| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis SUMu005] gi|308374277|ref|ZP_07435406.2| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis SUMu006] gi|308376685|ref|ZP_07439652.2| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis SUMu008] gi|308378898|ref|ZP_07484226.2| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis SUMu010] gi|308335059|gb|EFP23910.1| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis SUMu004] gi|308338867|gb|EFP27718.1| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis SUMu005] gi|308342552|gb|EFP31403.1| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis SUMu006] gi|308350358|gb|EFP39209.1| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis SUMu008] gi|308358935|gb|EFP47786.1| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis SUMu010] Length = 159 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + +Y +R ++ A + + +A A I FL IL L +V + RGR Sbjct: 1 MSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RP +I+I DV++ + + + LT V R + V Sbjct: 61 GGYELARPGTEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMRSV 119 Query: 122 LTQYSIECLV 131 L + ++ + Sbjct: 120 LEETTLADVA 129 >gi|154503497|ref|ZP_02040557.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149] gi|153795597|gb|EDN78017.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149] Length = 132 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR+++Y A +++E IS+ F++KI++ L AGI+ G Sbjct: 1 MQLNIATDYAIRIVIYMAKQR-RIVSSRELSENLKISQPFIYKIMRKLNHAGILAINTGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119 GG L + +QI + +++ E + C + C +C L K F Sbjct: 60 HGGYILQKETEQINLFEIMDTMERTMKWNRCLEDDRYCSCFATEACRLRETYLKMQEHFE 119 Query: 120 DVLTQYSIECLVR 132 + L + +I+ +++ Sbjct: 120 NELKETTIQKIIK 132 >gi|153011671|ref|YP_001372885.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563559|gb|ABS17056.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi ATCC 49188] Length = 154 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L + A ++ IA IS+ FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALAHLAALEPGESAFVADIATQNNISKKFLDAILLELRNDGILRSKKGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L +PA +ITI VV+ + C + DC +C + + A Sbjct: 62 GGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCNDCVDHRACQVRRSMLLVREA 121 Query: 118 FFDVLTQYSIECLVRN 133 VL + ++E RN Sbjct: 122 IAGVLDRMTLEQFTRN 137 >gi|307324656|ref|ZP_07603862.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306889538|gb|EFN20518.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 158 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ ++ + + + P +++AE +S +L K LQ L +AG+V +V+G+ G Sbjct: 1 MSGGVEWALHCCVVL-TSVEEPVPATKLAEFHDVSASYLAKQLQALSRAGLVRSVQGKAG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLRKA 114 G L R IT+LDVV+A + C A+ C C + + A Sbjct: 60 GYILTREPASITLLDVVEAVDGPAAAFTCTEIRQRGPLATPAESC--TTPCPIARAMSGA 117 Query: 115 LNAFFDVLTQYSIECLVRN 133 A+ L SI L ++ Sbjct: 118 DAAWRAALRAVSIADLAQD 136 >gi|289706858|ref|ZP_06503199.1| Rrf2 family protein (putative transcriptional regulator) [Micrococcus luteus SK58] gi|289556408|gb|EFD49758.1| Rrf2 family protein (putative transcriptional regulator) [Micrococcus luteus SK58] Length = 152 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD +RVLM A QIA+ + + K + L + G +E +RGR Sbjct: 1 MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119 GG + + ++V++ V +C + CP G C L L +A AF Sbjct: 61 HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL 120 Query: 120 DVLTQYSIECLV 131 L I LV Sbjct: 121 AELDTVRIRDLV 132 >gi|269956765|ref|YP_003326554.1| BadM/Rrf2 family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305446|gb|ACZ30996.1| transcriptional regulator, BadM/Rrf2 family [Xylanimonas cellulosilytica DSM 15894] Length = 168 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 5/145 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T + DY +R+ + A + ++A A I ++ IL L + G+VET R Sbjct: 1 MRITAKIDYAVRLCVELAARYDGGGYAKSDELATAQQIPANYVLGILNSLKQTGLVETRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG RL QI + DV++A + + P + + V A Sbjct: 61 GADGGARLASDPAQIAVADVIRAIDGPLASVGGRNVEDVSYPGSSA-PVRDVWVALRCAM 119 Query: 119 FDVLTQYSIECLVRN--RSSIKKIF 141 VL ++ ++ + ++++ Sbjct: 120 RSVLEVVTLADVLAGAMPAPVQELL 144 >gi|268679988|ref|YP_003304419.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] gi|268618019|gb|ACZ12384.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] Length = 135 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+ A + P + ++ +S+ FL KILQ L K I+ + +G Sbjct: 1 MLLTKASEYALLSLIIIA-QKNTPQDVDTLSTQLGLSKSFLAKILQSLAKEEILSSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCP--LVGSCGLTSVLRKALNA 117 GG L + ++IT+ VV+ E+ V EC + CP +C + VL K + Sbjct: 60 HGGFMLAKKPEEITLKMVVECAEKKQTVVFEC-SPSTQKCPGGKGDNCRVWPVLNKLQSK 118 Query: 118 FFDVLTQYSIECLVRNR 134 L ++ ++ Sbjct: 119 IDLFLDTMTLHDIINEN 135 >gi|288817531|ref|YP_003431878.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter thermophilus TK-6] gi|288786930|dbj|BAI68677.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter thermophilus TK-6] gi|308751134|gb|ADO44617.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter thermophilus TK-6] Length = 151 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D ++ +IAEA I + FL KI L + ++ + +G GG L P +QITI+DV+ Sbjct: 20 NRDRLVKVEEIAEAQKIPKPFLSKIFHKLARERVLRSYKGPTGGFALAVPPEQITIMDVI 79 Query: 80 KATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + +E + + C A C V C + + + D L +I L Sbjct: 80 RYLDEDYKLDYC-ALRPGRCEEWQVSPCRVHEKWTRLRDTIMDYLNNTTIAELAE 133 >gi|262201958|ref|YP_003273166.1| hypothetical protein Gbro_2020 [Gordonia bronchialis DSM 43247] gi|262085305|gb|ACY21273.1| protein of unknown function UPF0074 [Gordonia bronchialis DSM 43247] Length = 177 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 11/145 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51 M LT+ TD G+RV+M +A + + K++ L + Sbjct: 13 MQLTRFTDIGLRVVMRLVAAEAAARETASGPPTLTTKDLAAELAVPYTHVAKVVSRLSEL 72 Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 G+V + RGR GG+ + + + + E V +C + CPL +C L L Sbjct: 73 GVVHSRRGRSGGLMITDLGRAARVGWLAETLEGPGEVVDCNSPE--PCPLRAACHLRGAL 130 Query: 112 RKALNAFFDVLTQYSIECLVRNRSS 136 +A NAFF L +++I LV + Sbjct: 131 AQARNAFFRSLDEHAIVDLVAQPTG 155 >gi|160872032|ref|ZP_02062164.1| FeS assembly SUF system regulator [Rickettsiella grylli] gi|159120831|gb|EDP46169.1| FeS assembly SUF system regulator [Rickettsiella grylli] Length = 157 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY + ++ Y + H +IAE I+ K+L+ L G++ RG R Sbjct: 3 RLSKLTDYAVVIMAYLSQHPGLAINAKKIAERTGIALPTTSKLLKHLTHRGLLHANRGIR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L PA I++ +++ E + EC + C C + R+ Sbjct: 63 GGYLLAYPAADISLGTLIQTLEGPIALTECSHRTRT-CRFAQQCTIRDNWRRISAFIQMT 121 Query: 122 LTQYSIECLVR 132 S+ L++ Sbjct: 122 FMHISLADLIQ 132 >gi|56751534|ref|YP_172235.1| hypothetical protein syc1525_d [Synechococcus elongatus PCC 6301] gi|81301394|ref|YP_401602.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686493|dbj|BAD79715.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81170275|gb|ABB58615.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus elongatus PCC 7942] Length = 171 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 5/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R Y ++ L+ + D P + IA+ IS L K+L L KAG+V +G Sbjct: 26 MKLTVRAHYSLKALIDLCLQPEDEPVSMRAIAQRQNISPTLLEKLLVELCKAGLVTATKG 85 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RRGG +L RPA +I++ D++ A E + ++ ++ + Sbjct: 86 RRGGYQLARPAAKISLADILAAVGELSD----RDRQPLAPEEAADWVSRAIWQRLDAQWQ 141 Query: 120 DVLTQYSIECL 130 L Q S+ L Sbjct: 142 ATLRQVSLADL 152 >gi|89902226|ref|YP_524697.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346963|gb|ABD71166.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax ferrireducens T118] Length = 182 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + + ++ A+ P +S IA IS +L ++ L + G+V + RG Sbjct: 1 MRLSTKGRFAVTAMIDVALREKLGPVPLSDIAVRQQISLSYLEQMFSKLRQHGLVASTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + AD+IT+ D++ A E+ + K G + Sbjct: 61 PGGGYALGQQADRITVADIIGAVEDETDRSTKDAVRHAKTAASSAGKDMAQDLWDSLNTK 120 Query: 118 FFDVLTQYSIECLV 131 D + ++ L Sbjct: 121 MMDYMQSVTLRSLA 134 >gi|305664587|ref|YP_003860874.1| BadM/Rrf2 family transcriptional regulator [Maribacter sp. HTCC2170] gi|88708604|gb|EAR00840.1| transcriptional regulator, BadM/Rrf2 family protein [Maribacter sp. HTCC2170] Length = 136 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L + A + P +I++IA IS+ FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGLKALTFLASQENRQPVQIAEIARNENISQKFLESILLSLRKTGILGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + I + DV++ E + C F DCP +C + ++ + ++ Sbjct: 62 GGYYLIKEPKDILMTDVMRILEGPIAMVPCVSLNFYERCEDCPDEKTCSVHKLMLQVRDS 121 Query: 118 FFDVLTQYSIECLVR 132 ++ ++ L++ Sbjct: 122 ALEIYRNNTLADLIK 136 >gi|222823943|ref|YP_002575517.1| BadM/Rrf2 family transcriptional regulator [Campylobacter lari RM2100] gi|222539165|gb|ACM64266.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter lari RM2100] Length = 134 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L++ A + P + ++ I + FL KILQ L K ++++ +G Sbjct: 1 MLFTKASEYALLSLIHIA-KSKEPQDVDTMSNVLDIPKSFLAKILQALAKDALLKSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 +GG L + + T+ +++ + E +S V EC CP +C + +L K N Sbjct: 60 KGGFVLIKQPSEYTLKEIINSVEKKSINVFEC---SNGICPSQKEDNCKIMPILVKLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 D L ++E +++N Sbjct: 117 IDDFLVSITLEDIIQNN 133 >gi|119961490|ref|YP_946631.1| transcriptional regulator [Arthrobacter aurescens TC1] gi|119948349|gb|ABM07260.1| putative transcriptional regulator [Arthrobacter aurescens TC1] Length = 156 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 2/138 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R +M A + +A+A + K + L G ++ RG Sbjct: 1 MKINAFADVSLRAIMVLAAAPEGTLLTTQAVADAVGTPYNHVSKAMVRLRALGFIDVERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL + T+ ++++ + AEC + K CPL+ CGL + KA AF+ Sbjct: 61 RLGGSRLNEAGRKATVGELLRHLDSRQDPAECQSPTKA-CPLINECGLRHAMNKAREAFY 119 Query: 120 DVLTQYSIECLVRNRSSI 137 L I L R I Sbjct: 120 RELDTVVISSLPHARQMI 137 >gi|110679918|ref|YP_682925.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109456034|gb|ABG32239.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 157 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALADIAMQPQDKLVSLGDIATRQAISLAYLEQLFVKLRRAELVASVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL R I +++++ A +E+ A + LT+ L ++L+A Sbjct: 61 PGGGYRLTRSPSDIRVVEILSAVDETVDAMHKGAGASGGASGSQAQSLTNRLWESLSAHV 120 Query: 119 FDVLTQYSIECLVRNR 134 + L Q + ++ N Sbjct: 121 YVFLHQTRLSDVIANE 136 >gi|633731|gb|AAA61511.1| ORF3; 14-nt overlap with flhA [Campylobacter jejuni subsp. jejuni 81-176] Length = 136 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117 + G L + Q TI ++V + E + V EC CP +C L +L N Sbjct: 60 KVGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGG---TCPNNKEENCTLMPMLVNLQNK 116 Query: 118 FFDVLTQYSIECLVRNR 134 + L ++E +++N Sbjct: 117 VDEFLDSITLEDIMKNN 133 >gi|315638496|ref|ZP_07893673.1| rrf2 family protein [Campylobacter upsaliensis JV21] gi|315481487|gb|EFU72114.1| rrf2 family protein [Campylobacter upsaliensis JV21] Length = 133 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y + + P + +A I + FL KILQ L + G++ + +G Sbjct: 1 MLLTKASEYALLSLIYISSKS-TPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 +GG L R T+ +++ + E + V EC CP +C L SVL Sbjct: 60 KGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116 Query: 119 FDVLTQYSIECLVRNR 134 + L ++E +++N Sbjct: 117 DNFLDSITLEDIIKNN 132 >gi|284042783|ref|YP_003393123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283947004|gb|ADB49748.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 153 Score = 116 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +TDY +R + A + + P + IA A I FL KIL L +AGIVE+ RG Sbjct: 1 MRIGAKTDYALRAALELAANDGERPVKAEAIATAQQIPPRFLEKILNDLRRAGIVESRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L PAD+I + DV++A + H++ L +L A A Sbjct: 61 VEGGHLLASPADEIAVADVIRAIDGPLANVSGKRPHELSYDGAAE-KLPELLVAARAALR 119 Query: 120 DVLTQYSIECLVRNR 134 DVL + ++ +V + Sbjct: 120 DVLDRTTLADVVSGQ 134 >gi|58038586|ref|YP_190550.1| putative transcriptional regulator [Gluconobacter oxydans 621H] gi|58001000|gb|AAW59894.1| Putative transcriptional regulator [Gluconobacter oxydans 621H] Length = 160 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 3/138 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K DY +L++ H + + +A + E + K+L+ L +G+V + RG R Sbjct: 3 RLSKLADYATVLLVHLGRH-EGLATAAALAVETGVPEPTVAKLLKGLASSGLVLSHRGAR 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL + +T+ V+ A + + C + C CGL+ +A Sbjct: 62 GGYRLSSELETVTVATVIAAVDGPIAITACCDGRE--CEHSSLCGLSGQWDVVNDAILKT 119 Query: 122 LTQYSIECLVRNRSSIKK 139 L ++ + R+ + + Sbjct: 120 LNSITLADMGRHAERLPR 137 >gi|116669235|ref|YP_830168.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24] gi|116609344|gb|ABK02068.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24] Length = 149 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 3/144 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R +M A D IA+A + K + L + G+++ RG Sbjct: 1 MKINAFADVSLRAMMVLAAAPDGNLLTTQSIADAVGTPYNHVSKAMARLRELGVIDVERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL + T+ +++ A+C + DCPL+ C L L +A AF+ Sbjct: 61 RNGGSRLNEAGRRATVGQLLRQLNTRTDPADCHSL-NGDCPLINECRLRGALARAREAFY 119 Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143 L + L R + +F A Sbjct: 120 RELDDIVVSTLPGTR-QMAPVFQA 142 >gi|58617151|ref|YP_196350.1| cysteine desulfurase [Ehrlichia ruminantium str. Gardel] gi|58416763|emb|CAI27876.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia ruminantium str. Gardel] Length = 526 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++ Sbjct: 5 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +G GG L IT+ ++++ E+ + C + C + Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNGPGCLSNNNRCVTHKLWDDI 124 Query: 115 LNAFFDVLTQYSIECLVRNR 134 N D L S+E +V N Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144 >gi|119512675|ref|ZP_01631749.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414] gi|119462690|gb|EAW43653.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414] Length = 129 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 17 CAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 A H + P +I QIA I + +L ++L L + GIV++ RG +GG L R +IT Sbjct: 1 MATHYQSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGIVKSQRGSKGGYFLTREPWKIT 60 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + DV++ E V C + + + + + ++A A VL Y+++ L R Sbjct: 61 VFDVLECLEG-LDVRTCEEDNNP--KSIDTAVIKEIWQEACQAANLVLQNYTLQELCEKR 117 Query: 135 SSIKKI 140 S +++ Sbjct: 118 DSRRQL 123 >gi|312138539|ref|YP_004005875.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887878|emb|CBH47190.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 148 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT+ TD G+R++M A +AE +S K++ L + G+V T R Sbjct: 1 MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG+ + ++ + + E V C CPL C L S LR A +AF Sbjct: 61 GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDK--PCPLRRGCRLRSSLRVAQDAF 118 Query: 119 FDVLTQYSIECLVR 132 + L ++ + Sbjct: 119 YTALDAMTVRDIAA 132 >gi|222111232|ref|YP_002553496.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730676|gb|ACM33496.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus TPSY] Length = 187 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT R + + A+ + P + I+ IS +L I L +AG+V ++RG Sbjct: 1 MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L RP ++++ D+V A+E+ A+ D + + G + + Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEKYMGGAD---DKGTDTGIASAPGEMTAELWANFHSR 117 Query: 118 FFDVLTQYSIECLVRNRSS 136 + L ++ L+ R + Sbjct: 118 VMEYLQSITVADLLTQREA 136 >gi|255321430|ref|ZP_05362590.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae RM3277] gi|255301583|gb|EET80840.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae RM3277] Length = 134 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y A D P+ + ++ IS+ FL KILQ L + GI+ + +G Sbjct: 1 MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILVSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L + ++I+I ++++ E+ V EC ++ G C + + + Sbjct: 60 NGGFMLAQKPEEISIKRIIESAEKRKMAVFECSISADSCASSKGGMCQIWPMFSALQSKI 119 Query: 119 FDVLTQYSIECLVRN 133 D L ++ +++ Sbjct: 120 DDFLDTITLANIIKK 134 >gi|253582245|ref|ZP_04859468.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251835784|gb|EES64322.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 136 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+LMY I+ D ++I+E I LF +IL+ L KA +V +G Sbjct: 1 MRLKNEIEYVFRILMYLTINGDNRIIPSNEISEKEEIPHLFSLRILKKLEKADLVLIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + + +IT+ D +++ E S + +C S + G+CG+ +L+ + F Sbjct: 61 AKGGYKLKKDSREITLKDAIESIEGSICIKDCLESPESCTLRKGNCGVHRILKDIESQFI 120 Query: 120 DVLTQYSIECLVRNR 134 L + L + Sbjct: 121 SRLQNVNFRDLADGK 135 >gi|15919268|gb|AAL10759.1|AF338108_1 hypothetical iron-sulfur cofactor synthesis protein 1 [Ehrlichia ruminantium] Length = 522 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++ Sbjct: 1 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +G GG L IT+ ++++ E+ + C + C + Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120 Query: 115 LNAFFDVLTQYSIECLVRNR 134 N D L S+E +V N Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140 >gi|78189454|ref|YP_379792.1| hypothetical protein Cag_1493 [Chlorobium chlorochromatii CaD3] gi|78171653|gb|ABB28749.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium chlorochromatii CaD3] Length = 143 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 2/134 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK+ DY IR L+ A IAEA I FL +LQ L+ +V + G Sbjct: 1 MKILTKKADYAIRALLMLAAKEGGFMSAKAIAEAQDIPYQFLRSLLQELMHHHLVASKEG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R+ D I++ +++ + V+EC ++ C SC L + + Sbjct: 61 AHGGFRIETNPDNISVKQLIEIFQGEVQVSECMFRKQV-CRNRSSCVLRHEIMRIEEVVS 119 Query: 120 DVLTQYSIECLVRN 133 Q +I L+R Sbjct: 120 HEFGQLTIGSLLRK 133 >gi|119491073|ref|ZP_01623231.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106] gi|119453618|gb|EAW34778.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106] Length = 144 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ ++ Y + L+ H + P +I QIA I E +L ++L L ++GIV + R Sbjct: 1 MELSCKSQYAVLALLELTAHYPHGEPRQIRQIARQHHIPERYLEQLLATLKRSGIVRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L + +IT+ DVV E S + + S + V +A Sbjct: 61 GAKGGYLLAKEPWKITLFDVVVCLEGSNS----SPNRNRHHKSLESLIVDEVWEEAHQMA 116 Query: 119 FDVLTQYSIECLVRN 133 +L +Y+++ L Sbjct: 117 NSILQKYTLQDLCEK 131 >gi|319953691|ref|YP_004164958.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola DSM 14237] gi|319422351|gb|ADV49460.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola DSM 14237] Length = 136 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L + A D P +IS+IA A IS+ FL IL L K G + + +G+ Sbjct: 2 LSKKTKYGLKALTFLAQQVDRQPVQISEIANAENISQKFLETILLSLRKTGFLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + V++ E + C F DCP +CG+ ++ + ++ Sbjct: 62 GGYYLIKDPAEIQMASVMRVLEGPISMVPCVSLNFYEKCDDCPDEAACGVHKLMLQVRDS 121 Query: 118 FFDVLTQYSIECLVR 132 ++ S+ L+ Sbjct: 122 NLEIYRNTSLADLIA 136 >gi|225572497|ref|ZP_03781361.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM 10507] gi|225040037|gb|EEG50283.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM 10507] Length = 144 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RV+ A+ + ++ I E I+ F +KIL+ L KA IV RG Sbjct: 1 MLITRECDYAVRVIR--ALSGEERLSVNDICEREEITAPFAYKILKKLQKAKIVRGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALNA 117 GG L + +IT+LDV A + ++ EC K C L G C + L + Sbjct: 59 HGGYSLKKSVSEITLLDVYLAIDPGMYIIECMNPKKKCCRDEKLDGGCEVHQELLRIQER 118 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143 D+L++ S++ ++ +K+ Sbjct: 119 LQDMLSERSLQEILGESEKKEKVVGE 144 >gi|94985506|ref|YP_604870.1| BadM/Rrf2 family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555787|gb|ABF45701.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus geothermalis DSM 11300] Length = 155 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ Y + L + +I+EA + +L +IL L GIV++ +G Sbjct: 1 MRLSATDVYAFQALGFLGSQELTRWVSSEEISEATGVHRPYLVRILAALTAKGIVKSKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117 GG L R I++ +VV+A + C + + C C + V ++ +A Sbjct: 61 IGGGYALSRKPRLISLCEVVRAIDGPVAPLSCISLNWHEPCVEEARCHARATVYQRMRDA 120 Query: 118 FFDVLTQYSIECLV 131 VL ++S+E LV Sbjct: 121 MLAVLQEFSVEDLV 134 >gi|168700728|ref|ZP_02733005.1| hypothetical protein GobsU_14484 [Gemmata obscuriglobus UQM 2246] Length = 154 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ +Y +R +++ A +QIAEA + + +L KILQ L K GIV+T RG G Sbjct: 2 FSRTVEYALRAVVHLAHEAPKARTTAQIAEATQVPKDYLSKILQGLAKKGIVDTQRGVGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 GV L + +TILDVV A E + C + P + C L + A+ + Sbjct: 62 GVSLTKSPHDLTILDVVNAVEPIERITTCPLNLPNHGPNL--CPLHKRMDAAMALVEEAF 119 Query: 123 TQYSIECLVRNRSS 136 ++ ++ + +S Sbjct: 120 RGSTLAEVLADPTS 133 >gi|82702897|ref|YP_412463.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410962|gb|ABB75071.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira multiformis ATCC 25196] Length = 156 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ T Y I+ L+Y A + IAE +L KILQ L K ++ + RG Sbjct: 1 MILSRTTQYAIQALIYMATQPPGVAVLNRTIAECLRSPPTYLAKILQELCKGNLLYSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 ++GG L +D+I ++ +V+ TE F +C K+ C +C + + Sbjct: 61 KQGGFCLRESSDKINLMQIVRITEGPGFTEDCVLGLKV-CSDTTACPMHAKWWPIKQEIV 119 Query: 120 DVLTQYSIECLVR 132 +L +++ L Sbjct: 120 KLLQGQTLDTLAA 132 >gi|57239143|ref|YP_180279.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden] gi|57161222|emb|CAH58138.1| hypothetical protein Erum4140 [Ehrlichia ruminantium str. Welgevonden] Length = 522 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++ Sbjct: 1 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +G GG L IT+ ++++ E+ + C + C + Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120 Query: 115 LNAFFDVLTQYSIECLVRNR 134 N D L S+E +V N Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140 >gi|58579094|ref|YP_197306.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden] gi|58417720|emb|CAI26924.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia ruminantium str. Welgevonden] Length = 526 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++ Sbjct: 5 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +G GG L IT+ ++++ E+ + C + C + Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 124 Query: 115 LNAFFDVLTQYSIECLVRNR 134 N D L S+E +V N Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144 >gi|147677388|ref|YP_001211603.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146273485|dbj|BAF59234.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 123 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +SE + KAG+V +VRG +GG L R +IT+ DV++A E Sbjct: 1 MAERQNLSEHYWSSYSHA-EKAGLVRSVRGAQGGYILAREPAEITVGDVIRALEGPIAPV 59 Query: 90 ECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 C + C C +V + + VL S+ + ++ Sbjct: 60 SCVSEEAPGKCDEADYCITRTVWARVRDGIARVLDSISLADICLEAEKAQQ 110 >gi|152990870|ref|YP_001356592.1| BadM/Rrf2 family transcriptional regulator [Nitratiruptor sp. SB155-2] gi|151422731|dbj|BAF70235.1| transcriptional regulator, BadM/Rrf2 family [Nitratiruptor sp. SB155-2] Length = 133 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ T+Y + L+ A + P ++ IS FL KILQ L K I+++ +G Sbjct: 1 MLFTRATEYALLALVVIA-KEERPLGTDYLSRRLNISRSFLAKILQALAKQDILKSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 GG +L RPA+Q++I ++ A E + +C +S + CP C L L K Sbjct: 60 SGGFQLARPANQLSIKEISTAAEGKGVNIFDC-SSDQACCPSNKGDFCTLWPFLNKLQTR 118 Query: 118 FFDVLTQYSIECLVR 132 D L + +++ L+ Sbjct: 119 VDDFLEELTLQDLME 133 >gi|110634404|ref|YP_674612.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285388|gb|ABG63447.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp. BNC1] Length = 169 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + I + A + + S +AE +S +L K LQ L A I+E+V G Sbjct: 1 MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113 GG RL + ++I++LD+V A E C + L S CG+ + + + Sbjct: 61 PYGGYRLAKAPERISLLDIVLAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLR 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136 A A+ VL + + +V + Sbjct: 121 AERAWRAVLAETKLSEIVDGYKA 143 >gi|255262733|ref|ZP_05342075.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] gi|255105068|gb|EET47742.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] Length = 152 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + Y + L+ A+ + + +I++ IS +L ++ L + G+VE+VR Sbjct: 1 MKLSTKGRYAMVALVDLALLQSDARLVTLGEISKRQDISLPYLEQLFVKLRREGLVESVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117 G GG RL R + I ++D++ A +E+ A + L++ L + L+A Sbjct: 61 GPGGGYRLARASSDIRVVDILGAVDETVSAMHKGAGASGAASGSRAQSLSNRLWEGLSAH 120 Query: 118 FFDVLTQYSIECLVRN 133 + L Q + +V N Sbjct: 121 VYVFLHQTRLSDVVSN 136 >gi|220910380|ref|YP_002485691.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866991|gb|ACL47330.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7425] Length = 145 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y + ++ A + P +I QIA I + +L ++L L + G++ + R Sbjct: 1 MELSCKSEYALLAMLELADAYKRNEPLQIRQIAALHSIPDRYLEQLLATLRRCGLIRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L R QIT+L+V++ E + + + + ++A A Sbjct: 61 GAKGGYLLAREPWQITLLEVMECIEG---LETRPTDKSLSTETIERAVVRESWQEACQAA 117 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 VL + S++ L R + +++ Sbjct: 118 HSVLQRCSLKDLCDRRDTKRQL 139 >gi|254471092|ref|ZP_05084495.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] gi|211960234|gb|EEA95431.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp. JE062] Length = 140 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M A++ + I +++EA + K++Q L + G +++ RGR GG+ L I Sbjct: 1 MLMAVNRNDKWTIDRLSEATNSGRPQVAKVVQILNRKGYIKSRRGRLGGLMLAHAPASIN 60 Query: 75 ILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 I +++ E++F + ECFA S CPL G C L+ AL++F + L ++ ++ N Sbjct: 61 IGKLIRNVEDNFALVECFACSPSKPCPLEGVCRFRGKLKHALDSFMEELDAINLTQIIEN 120 Query: 134 RSSIK 138 I+ Sbjct: 121 ADEIR 125 >gi|322419199|ref|YP_004198422.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320125586|gb|ADW13146.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 153 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A I + FL IL L +GI+++ +G+ Sbjct: 2 ISKKTKYGLKALIYLARKYDKGPILIADLARDENIPKKFLEAILLSLKNSGILQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L R IT ++ + C + +C SCG+ V++ +A Sbjct: 62 GGYYLGRNPKDITFGQAIRVMDGPLAPVPCVSESAYAECRECHDEFSCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLV 131 +L + S+ ++ Sbjct: 122 MASILDRTSLADVL 135 >gi|254437797|ref|ZP_05051291.1| rrf2 family protein (putative transcriptional regulator) [Octadecabacter antarcticus 307] gi|198253243|gb|EDY77557.1| rrf2 family protein (putative transcriptional regulator) [Octadecabacter antarcticus 307] Length = 157 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L A+ + + +++ +S +L ++ L +AG+VE+VRG Sbjct: 1 MKLSTKGRYAMVALADIALQPAETLVSLGELSRRQGLSLPYLEQLFVKLRRAGLVESVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL + A I +++++ A +E+ A + +T+ L + L+A Sbjct: 61 PGGGYRLAKGASDIRVVEILAAVDETVSAMHQGAGVSGGSSGSRAQSMTNRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + +V N Sbjct: 121 YVYLHQTRLTDVVSN 135 >gi|190892504|ref|YP_001979046.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190697783|gb|ACE91868.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 162 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +A +V+T G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL R + +I LD+V+A E C C G C + ++ + Sbjct: 61 PSGGYRLARASCEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136 A A+ + L + + LV + S Sbjct: 121 ADEAWRETLRRVRLSDLVDSLSQ 143 >gi|224367513|ref|YP_002601676.1| hypothetical protein HRM2_03930 [Desulfobacterium autotrophicum HRM2] gi|223690229|gb|ACN13512.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 162 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 17/143 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + L Y ++ I QIAE I +L K+ L KAGIV + G Sbjct: 1 MQFSIGVENAFHSLFYMVDFPEHKTIGIKQIAELNKIKVTYLSKVFTKLRKAGIVRSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------------IDCPLVGSCGL 107 +GG L + A+ I+ D+++A E + +C K +CP C + Sbjct: 61 VKGGYELAKQAENISFWDIIEAIEGPTYFFQCAEIRKKNIFVDDPSVFTAECP----CLI 116 Query: 108 TSVLRKALNAFFDVLTQYSIECL 130 V+++A F D L S+ L Sbjct: 117 KVVIQEAEELFRDRLRNRSLRWL 139 >gi|313682882|ref|YP_004060620.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313155742|gb|ADR34420.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 134 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK ++Y + L+ A +P +++ IS+ FL KILQ L + GI+ + +G Sbjct: 1 MLMTKASEYALLSLIVLA-KAGHPLDADTLSKELDISKSFLAKILQSLARQGILNSYKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117 GG L R + +IT+L+V++A E S V C S + DCP SCGL L + Sbjct: 60 NGGFELARHSREITVLEVMEAAEGKSPAVFSCSPSQE-DCPSNKAMSCGLWPFLNRLQGK 118 Query: 118 FFDVLTQYSIECLVRN 133 L ++E ++ Sbjct: 119 VDAFLGTLTLEAILEE 134 >gi|186683299|ref|YP_001866495.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465751|gb|ACC81552.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 145 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + +Y + ++ + N P +I QIAE I +L ++L L G++ ++R Sbjct: 1 MRLPNKFEYSLLAMLALVDSYQNGDPMQIKQIAELKGIQNRYLEQLLATLRCQGLINSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNA 117 G +GG L R +IT+LDV+ A E E A + S + V ++A A Sbjct: 61 GAKGGYILARDPRKITVLDVLTAIEG----VEIDAPANNTTIDTMESSIVEEVWQEACQA 116 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 V ++S++ L RS +++ Sbjct: 117 ANFVFQKHSLQDLWERRSKRQQM 139 >gi|77165193|ref|YP_343718.1| hypothetical protein Noc_1716 [Nitrosococcus oceani ATCC 19707] gi|254434008|ref|ZP_05047516.1| rrf2 family protein (putative transcriptional regulator) [Nitrosococcus oceani AFC27] gi|76883507|gb|ABA58188.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani ATCC 19707] gi|207090341|gb|EDZ67612.1| rrf2 family protein (putative transcriptional regulator) [Nitrosococcus oceani AFC27] Length = 141 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 12/137 (8%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R Y I +M A+ + IA+ IS +L +I L G+VE +RG Sbjct: 1 MRFSNRPRYAISAMMNLALVKQQKSITLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG L R A++ITI +++ A + + + + Sbjct: 61 PGGGYHLTRAAEKITIAEIIAAVDKQPGKLNPLAIATNSVSEAER--------LWHDFSM 112 Query: 117 AFFDVLTQYSIECLVRN 133 +D L Q ++ L R Sbjct: 113 RLYDFLNQITLADLARR 129 >gi|168699748|ref|ZP_02732025.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata obscuriglobus UQM 2246] Length = 169 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+++ DY + +L Y N IAE +S F+ IL+ L ++G V + RG +G Sbjct: 4 LSRKADYALLILSYL-YQNKSGGTARAIAEQFGLSRSFVANILKELCQSGFVASHRGVKG 62 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAFF 119 G L R A +++ ++++ E+ F + C A C +C + + Sbjct: 63 GYALSRDAAGVSLAELLETVEDGFRLTVCNTVHADGAEPCSHSSTCTVKGPMAGVYQRLM 122 Query: 120 DVLTQYSIECLVRNRSS 136 VL ++ L +S Sbjct: 123 GVLRDVTLAELFDPQSP 139 >gi|238060932|ref|ZP_04605641.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882743|gb|EEP71571.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 166 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 18/152 (11%) Query: 1 MHLTKRTDYGIRVLM-----------------YCAIHNDYPNRISQIAEACCISELFLFK 43 M+++ R+DY +R ++ + + + +AE+ I FL Sbjct: 1 MYVSARSDYALRAMLAVAVAAADGGGTTGDLGHAPAPGGELVKAAALAESQAIPLSFLQG 60 Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103 IL L +AG++ + RG GG L RPAD+I++ DV++A S + V Sbjct: 61 ILLDLRRAGLLLSHRGAEGGYALTRPADEISVGDVLRAVGGSLTSVRGLPAEIAGYHGVA 120 Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 + GL V A V+ + S+ L+ +S Sbjct: 121 T-GLRDVWLAVDGAIATVVDRTSLADLLAAKS 151 >gi|253999837|ref|YP_003051900.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986516|gb|ACT51373.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. SIP3-4] Length = 154 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD G+R LMY + + I+++A+ + L K++ L K G ++ RG Sbjct: 5 MQLTKFTDLGLRALMYVSQSTHTRMVSITELAQQLNVPRNHLIKVVTFLNKTGWIQATRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL +++ VV+ E + +C + CPL GSCGL VL ++L+ F+ Sbjct: 65 PGGGLRLGMDPASLSLGLVVRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVFY 121 Query: 120 DVLTQYSIECLVRNRSS 136 L Y++ + +S Sbjct: 122 RHLDTYTLADVTPKHTS 138 >gi|226356686|ref|YP_002786426.1| Rrf2 family transcriptional regulator [Deinococcus deserti VCD115] gi|226318676|gb|ACO46672.1| putative transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115] Length = 155 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ Y + L + + +I++A + +L +IL L G+V++ +G Sbjct: 1 MRLSATDVYAFQALGFLGTQAEGHWISSEEISDATGVHRPYLVRILAALTAKGVVKSKKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLT-SVLRKALNA 117 GG L R I++ +VV+A + C + + C C S+ R+ +A Sbjct: 61 IGGGYALARKPQLISLCEVVRAIDGPVAPLSCISLNWHEPCVEEDRCHARASIYRRMRDA 120 Query: 118 FFDVLTQYSIECLV 131 VL ++S+ LV Sbjct: 121 MLGVLQEFSVADLV 134 >gi|172041371|ref|YP_001801085.1| Rrf2 family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852675|emb|CAQ05651.1| putative transcriptional regulator (Rrf2 family) [Corynebacterium urealyticum DSM 7109] Length = 164 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 9/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAI------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M LT D G+RVLM + P RI +A+ S + K++ L G++ Sbjct: 1 MQLTTFADLGLRVLMVLGATQAVDAADRSPVRIQDLADQLNASRNHVAKVVNMLTSDGLL 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRK 113 E++RGR GGV + + ++ +++ E + V +C + CPL C L L Sbjct: 61 ESIRGRYGGVHITEQGMRASVGALLRQLEGNREVVDC--EGALQCPLARHDCALRRRLAA 118 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A AFF L ++ LV + Sbjct: 119 AQEAFFATLDGDTVGDLVSATKGL 142 >gi|157737595|ref|YP_001490278.1| hypothetical protein Abu_1353 [Arcobacter butzleri RM4018] gi|157699449|gb|ABV67609.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 135 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ + Y I+VL+Y A N + ++++ I +L K++ L K ++ ++GR Sbjct: 1 MILSTTSQYAIKVLIYMAEDNSKLYSVKELSKILEIPYKYLSKVMTNLSKKELILAIQGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L +P ++I + D++ A E+ +C + C C L ++ Sbjct: 61 YGGFKLSKPKEEIKLKDILVALEDE-SFKQCVLGGGV-CNQKNKCELHDTWDESKQTIQK 118 Query: 121 VLTQYSIECL 130 L + ++ L Sbjct: 119 SLLEVTLGEL 128 >gi|331092089|ref|ZP_08340920.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402290|gb|EGG81861.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium 2_1_46FAA] Length = 131 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TDYGIR+++Y I N+ +AE I + ++ K+ + L A IV + +G Sbjct: 1 MQLSATTDYGIRIVLYL-IKNNEIISSGVLAEQLEIPKTYVLKVTKKLELANIVTSYQGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ L QIT+ DV+ A E + + +C ++ D C L V A Sbjct: 60 NGGIGLAGDPAQITLWDVISAVESTTVINKCMEQENEYDVKAEDYCKLRKVYGLLQQAVE 119 Query: 120 DVLTQYSIECL 130 D L + L Sbjct: 120 DRLQSIKLIDL 130 >gi|313201811|ref|YP_004040469.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688] gi|312441127|gb|ADQ85233.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp. MP688] Length = 154 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TD G+R LMY + + I+++A+ + L K++ L K G ++ RG Sbjct: 5 MQLTKFTDLGLRALMYVSQSTHTRMVSITELAQQLNVPRNHLIKVVTFLNKTGWIQATRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+RL +++ V++ E + +C + CPL GSCGL VL ++L+ F+ Sbjct: 65 PGGGLRLGMDPASLSLGLVIRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVFY 121 Query: 120 DVLTQYSIECLVRNRSS 136 L Y++ + +S Sbjct: 122 RHLDTYTLADVTPKHTS 138 >gi|261855901|ref|YP_003263184.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Halothiobacillus neapolitanus c2] gi|261836370|gb|ACX96137.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus neapolitanus c2] Length = 150 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 12/144 (8%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT + + + L++ A + +++I+ +S +L ++ + +A +V R Sbjct: 1 MRLTTKCRHAVTALIHLANRSNEQTTVSLAEISTIQGVSISYLEQLFSKMRQADLVIGTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKA 114 G GG RL RP +QIT+ + A ++ C CP + + Sbjct: 61 GPGGGYRLNRPPEQITVAHIADAIDD-----RCREERLEGFNKSCPDKRNFA-QDKWNEF 114 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + L ++ V N++ I+ Sbjct: 115 SRELYLFLDTITLSRFVENQTPIQ 138 >gi|72161204|ref|YP_288861.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX] gi|71914936|gb|AAZ54838.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX] Length = 150 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A P Q+A A I FL IL L +AG+V + RG Sbjct: 1 MRLSARVDYALRAAAELAAVGGGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA +I++ D+++A + ++ L V + Sbjct: 61 VGGYWLARPASEISLADIIRAVDGPLANVRGERPEHLEYDGAAR-SLQQVWIALRASERA 119 Query: 121 VLTQYSIE 128 +L ++E Sbjct: 120 ILESVTLE 127 >gi|153812308|ref|ZP_01964976.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174] gi|149831715|gb|EDM86802.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174] Length = 147 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M K+T YG+ L+ A P + IAE IS FL I + GIV++V+G Sbjct: 1 MKFCKKTRYGLTALVDLAAQPSTTPVALKTIAERNDISLQFLEHIFASFRRTGIVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + AD+IT+ VV+ E S+ + + + + V+ Sbjct: 61 SQGGYNLAKAADEITVASVVEVLEGSYHLEDEDVLAENSYKGISDTIQKLVVDSVNQELD 120 Query: 120 DVLTQYSIECL 130 +L+ ++ + Sbjct: 121 QILSNLTLAQM 131 >gi|284040273|ref|YP_003390203.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819566|gb|ADB41404.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM 74] Length = 161 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+ Y I+ L P IS I+ I + FL IL L GI+++ +G+ Sbjct: 2 ISKKAKYAIKALKVLTEEYGKGPVLISYISAKENIPKKFLEAILLELRNHGILQSQKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117 GG L ++ + V++ + C + + DC +C L ++ + +A Sbjct: 62 GGYLLRVDPGRVNLAQVLRVIDGPIAPTPCVSFNFYVKCDDCNDEVTCALRPIMERVRDA 121 Query: 118 FFDVLTQYSI 127 V ++ Sbjct: 122 NLGVYENTTL 131 >gi|149202529|ref|ZP_01879501.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius sp. TM1035] gi|149143811|gb|EDM31845.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius sp. TM1035] Length = 149 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 7/143 (4%) Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +T +T Y ++ LM A RI IA + FL IL L +AG++ + RG Sbjct: 2 ITHKTKYALKALMVLADEKAGEGVALRIEDIAARSGAPKRFLEHILLDLKRAGLIGSRRG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 R GG + + ++++ +V++ + C + DC +C + +V Sbjct: 62 RNGGYEMIKEPRRVSLAEVLRLIDGPMAPLPCLSRKAYQRCEDCTDEQTCRVRAVFGGFY 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138 + ++ ++ L R+ ++ Sbjct: 122 ATYILMIESLTVADLQRDARPLE 144 >gi|322419855|ref|YP_004199078.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320126242|gb|ADW13802.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 153 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A I + FL IL L +GI+++ +GR Sbjct: 2 ISKKTKYGLKALIYLARKYDQGPILIADLAREERIPKKFLENILLSLKNSGILQSRKGRG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L RP D+IT V+ E C + +C +CG+ V++ + Sbjct: 62 GGYYLGRPPDKITFGQAVRVMEGPLAPVPCVSEMAYAKCTECGDELTCGIRLVMKDVRDE 121 Query: 118 FFDVLTQYSIECLVRN 133 +L ++ +++ Sbjct: 122 MARILDGTTLADVLKK 137 >gi|169630216|ref|YP_001703865.1| hypothetical protein MAB_3134c [Mycobacterium abscessus ATCC 19977] gi|169242183|emb|CAM63211.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 137 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ TD G+R++M A+ + +A C+S K++ L + G +E+ RG Sbjct: 1 MQLTRFTDLGLRIVMRLAVEGPNAQLHTDDLAAQLCVSYTHATKVVARLSEMGAIESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GGVR+ + + + + E S V +C CPL +C L LR A +AFF Sbjct: 61 RHGGVRITQDGLGRRVGSLARKLERSGEVIDC--EGDPPCPLRRNCRLREALRSAQDAFF 118 Query: 120 DVLTQYSIECLVR 132 L Q+++ + R Sbjct: 119 THLDQWTVAEIAR 131 >gi|253700358|ref|YP_003021547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251775208|gb|ACT17789.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 153 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ L+Y A D P I+ +A + + FL IL L GI+++ +G+ Sbjct: 2 ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L R +IT V+ E C + +C +CG+ V++ +A Sbjct: 62 GGYYLGRHPSKITFGQAVRVMEGPLAPVPCVSETAYAKCTECENEVTCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRN 133 +L ++ ++ Sbjct: 122 MAVILDGTTLADVLEK 137 >gi|57242644|ref|ZP_00370581.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter upsaliensis RM3195] gi|57016573|gb|EAL53357.1| rrf2 family protein (putative transcriptional regulator) superfamily [Campylobacter upsaliensis RM3195] Length = 133 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y + + P + +A I + FL KILQ L + G++ + +G Sbjct: 1 MLLTKASEYALLSLIYISSKS-TPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118 RGG L R T+ +++ + E + V EC CP +C L SVL Sbjct: 60 RGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116 Query: 119 FDVLTQYSIECLVRNR 134 + L ++E ++ N Sbjct: 117 DNFLDSITLEDIINNN 132 >gi|325830725|ref|ZP_08164109.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] gi|325487132|gb|EGC89575.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] Length = 186 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+R DY R+L D +S IAE I F I LVK G+++TVRG Sbjct: 1 MDVTRRCDYACRILRAAYKSGDSYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+ L +T+L+V++A + ++ C C C + + A Sbjct: 61 RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119 Query: 121 VLTQYSIECLVRNRSS 136 +++ L+ +S Sbjct: 120 YFGAITLKDLIEQGAS 135 >gi|74316354|ref|YP_314094.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055849|gb|AAZ96289.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans ATCC 25259] Length = 154 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ + Y ++ L+Y A D P IA + +L KILQ L K ++ + RG Sbjct: 1 MILSRTSQYAVQALIYMATQPDATPVLNKDIAAKLGVPAPYLAKILQSLAKGNLLFSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L ++IT++ + TE F C K C +C L Sbjct: 61 RLGGFCLREGGEKITLMQIFLLTEGPAFTQSCLLGLK-KCSDETACPLHFRWVPVKKKII 119 Query: 120 DVLTQYSIECLVR 132 D+L + +++ L + Sbjct: 120 DLLHETTLDKLAK 132 >gi|257460500|ref|ZP_05625601.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] gi|257441831|gb|EEV16973.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] Length = 137 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + ++ A + + I+ IS FL KILQ L +AG++ + +G Sbjct: 1 MLFTKASEYALLSMICIAGKEES-MDVDSISSELGISRSFLAKILQNLARAGLLNSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 +GG L R AD+IT+ +++K+ E V +C A CP + C + + + Sbjct: 60 KGGFVLARNADKITLSEIIKSAERRKATVFDCTAEGIDACPNGRTLCRVNLMFGELQEKV 119 Query: 119 FDVLTQYSIECLVRNRSS 136 + + ++ ++ Sbjct: 120 DEYMDTITLADIIGKERK 137 >gi|83814365|ref|YP_444885.1| rrf2 family protein (putative transcriptional regulator) [Salinibacter ruber DSM 13855] gi|83755759|gb|ABC43872.1| rrf2 family protein (putative transcriptional regulator) [Salinibacter ruber DSM 13855] Length = 215 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 14/140 (10%) Query: 1 MHLTKRTDYGIRVLMYCAI-------------HNDYPNRISQIAEACCISELFLFKILQP 47 M L+K +YG+R ++Y I I++ I FL K+ Q Sbjct: 54 MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 113 Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 L AG++ + RG GGV L R D I++ ++V A + + EC C C L Sbjct: 114 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEECVLGL-PGCGEAEPCPL 172 Query: 108 TSVLRKALNAFFDVLTQYSI 127 + + + ++ Sbjct: 173 HEHWTEERDRMKATFQRTAL 192 >gi|254562344|ref|YP_003069439.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens DM4] gi|254269622|emb|CAX25593.1| putative transcriptional regulator, Rrf2 family [Methylobacterium extorquens DM4] Length = 150 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 15 MYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 M+ + +A+ IS L KI Q LV+AG+VE +GR GGVRL R A +I Sbjct: 1 MHLTLAERRVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREI 60 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + +V E V +C + CPL+G C L A AFF L + ++ +V Sbjct: 61 RLGRLVADLEGVGTVVDC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVVAG 117 Query: 134 R--SSIKKIFNA 143 ++++ +F Sbjct: 118 PTAAALRALFRG 129 >gi|330720575|gb|EGG98846.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC2047] Length = 130 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 S I+ IS +L ++ L + +V +VRG GG +L R +QI + ++V A ES Sbjct: 2 SDISSRQDISLSYLEQLFSKLRRRELVTSVRGPGGGYQLARELEQICVAEIVDAVNESVD 61 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 C + +C +C ++ L+ S+ LV R Sbjct: 62 ATLC--NGDNNCQHGHACLTHNLWDDLSKQIHSFLSSISLRDLVDRRE 107 >gi|317132029|ref|YP_004091343.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] gi|315470008|gb|ADU26612.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] Length = 135 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +R++ A ++E ++ F KI + L +AGIV + +G Sbjct: 1 MRITQEADYAVRIIDCLATAGTR-MDARTVSEKTGVTLRFTLKIFRKLGQAGIVRSFKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117 +GG L R D+I + V++A + + C + + C L+ C +V + Sbjct: 60 QGGYELARDPDEINLRQVIEAVDGPININRCM-TGSLPCALLEDTRLCYYHTVFNELSKT 118 Query: 118 FFDVLTQYS 126 + L + Sbjct: 119 IQEKLESVT 127 >gi|325284485|ref|YP_004257024.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] gi|324316659|gb|ADY27770.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus proteolyticus MRP] Length = 156 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 17/158 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ ++ + ++ + A+ + + +L K L+ LV+AG++ G Sbjct: 1 MKLSQGVEWCLHAVVLLGQLPQGTVLPRTLMAQHHGLPDDYLAKYLKQLVRAGVLMASTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 RGG RL RPA++IT +V++A E C A+ +C C + ++ Sbjct: 61 PRGGYRLARPAERITAWEVIEAIEGGQSFFHCQEIRQCGTGAARPAEC--TEPCAIHQMM 118 Query: 112 RKALNAFFDVLTQYSIECLVRN------RSSIKKIFNA 143 A + D L+Q ++ LV+ + + + NA Sbjct: 119 HSAFLTWKDQLSQTTVADLVQQVPEHVRERNRQGLLNA 156 >gi|332183985|gb|AEE26239.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida 3523] Length = 136 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A ++ P ++I+E+ ++ + K+L L A IV + RG Sbjct: 3 KISKLLDYGLLVVVTIAQNDSNPYSAAKISESTGLNIPTVRKLLNQLSLANIVTSKRGIE 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L +IT+LD+VK E+ + EC K C L G+C ++ + + + Sbjct: 63 GGYTLVSDPREITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLGL 120 Query: 122 LTQYSIECLVRNRSS 136 L++ SI +V N+ Sbjct: 121 LSKTSIYDIVNNKDK 135 >gi|218674482|ref|ZP_03524151.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 156 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 7 TDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 ++ + A + +AE + + +L K LQ L +A +VET G GG R Sbjct: 1 VEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYR 60 Query: 66 LCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRKALNAFF 119 L R ++ L++V+A E C C G C + ++ +A A+ Sbjct: 61 LARAPSEVNFLEIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWR 120 Query: 120 DVLTQYSIECLV 131 D L + + LV Sbjct: 121 DTLRRVRLSDLV 132 >gi|87306783|ref|ZP_01088930.1| Transcriptional Regulator, BadM/Rrf2 family protein [Blastopirellula marina DSM 3645] gi|87290962|gb|EAQ82849.1| Transcriptional Regulator, BadM/Rrf2 family protein [Blastopirellula marina DSM 3645] Length = 142 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M+++ +T+Y ++ A + P R+ ++A I FL +IL L AG+V++ R Sbjct: 1 MNISAKTEYACVAMIELAALYDSGDPVRVRELAATHSIPAHFLTQILLQLKGAGMVQSTR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG RL R +I+I D+ + E C A K P + L ++ +A A Sbjct: 61 GATGGYRLARDPSEISIYDIHRVIEGDSD-QPCGALQK---PTPAAAALKALCCEAATAQ 116 Query: 119 FDVLTQYSIECLVRNRSS 136 ++L+ ++ + S Sbjct: 117 REILSAATLADMAEKAGS 134 >gi|254423218|ref|ZP_05036936.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335] gi|196190707|gb|EDX85671.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335] Length = 134 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%) Query: 13 VLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 L+ ++H P RI QIA I + +L ++L L + G V++ RG +GG L R Sbjct: 3 ALIELSLHYSKGEPLRICQIAAQQGIPDRYLEQLLATLRRGGFVKSQRGAKGGYLLTREP 62 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 Q+++LDVV E + A ++ V ++ + VL +Y+++ L Sbjct: 63 WQVSLLDVVSCIEG----FDANAREVKSPQTTEGAVVSEVWQEVWRSAESVLEEYTLQDL 118 Query: 131 VRNRSSIKKI 140 V R++ +++ Sbjct: 119 VDKRNTRQQV 128 >gi|154254085|ref|YP_001414909.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154158035|gb|ABS65252.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 149 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 10/140 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+K+T + ++ AI+ P + +I + I + +L +++Q LV AGI++ VRG Sbjct: 3 RLSKKTWLALEAVVDVAINARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVRGP 62 Query: 61 RGGVRLCRPADQITILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGG L R +I + +VV+ A E S S +G + + ++ Sbjct: 63 RGGYTLARERRRIPVGEVVRVVGAMEASDEPTATAPSE------LGERVIAPLWQEVQRE 116 Query: 118 FFDVLTQYSIECLVRNRSSI 137 L +IE + R + Sbjct: 117 LMAKLDNITIEDMCRKAEEV 136 >gi|254459294|ref|ZP_05072715.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] gi|207083907|gb|EDZ61198.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] Length = 133 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ ++Y I L+ + P ++ I + FL KILQ L K GI+++ +G Sbjct: 1 MLITRASEYAILSLIVLS-KATSPMDSETLSNQLSIPKSFLAKILQSLAKKGILKSFKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 GG L + I++L V+ A E V +C S K DCP C + L K Sbjct: 60 NGGFTLLKDPKDISMLSVMSAVEGKAPAVFDCSPSQK-DCPSDRAELCSIWPFLNKLQGK 118 Query: 118 FFDVLTQYSIECLVR 132 D L + S++ ++ Sbjct: 119 IDDFLAELSLDDILE 133 >gi|304436329|ref|ZP_07396306.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370684|gb|EFM24332.1| iron-sulfur cluster assembly transcription regulator IscR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 175 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 14/138 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI +++ A D P I I+E IS+++L ++ L ++ +V +++ Sbjct: 29 MKISAKGRYGIASMVFLARSYDTSSPVTIISISEHLGISKIYLEQVFALLKRSKLVNSIK 88 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAE-----CFASHKIDCPLVGSCGLTSVLRK 113 G +GG +L RP IT D++ A E + E C K+D L + Sbjct: 89 GSQGGYQLARPPHDITAYDILSAIE--IALIEKTGSSCEKMEKLDLVLA-----RDLFGV 141 Query: 114 ALNAFFDVLTQYSIECLV 131 D L ++E L+ Sbjct: 142 LDQNIHDTLNAVTLEDLL 159 >gi|209547809|ref|YP_002279726.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533565|gb|ACI53500.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 166 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + I + A + + +AE +S +L K LQ L AGI++TV G Sbjct: 1 MKMSDGVEQAIHSVAMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113 RGG RL + ++I++LD++ A E C + D C +++ + + Sbjct: 61 PRGGYRLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRLFAKPCNISAAMLR 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + L + SI L Sbjct: 121 AERVYRAELAKTSIADL 137 >gi|325291884|ref|YP_004277748.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3] gi|325059737|gb|ADY63428.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3] Length = 167 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + I + A + + +AE +S +L K LQ L AGIV TV G Sbjct: 1 MKLGDGVEQAIHSVGMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQLLSGAGIVSTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 +GG RL R D+IT+LD+V A E C + PL G CG+ + + K Sbjct: 61 PKGGYRLARTTDKITLLDIVLAVEGPQPAFRCAEIRQRGPNPLPGRYFTKPCGINAAMLK 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A+ L + SI ++ + Sbjct: 121 AEKAYRAELAKTSIADILGD 140 >gi|288917460|ref|ZP_06411826.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] gi|288351163|gb|EFC85374.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] Length = 136 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R +Y IR ++ A+ + +A + IS +L IL L +AG++ RG Sbjct: 1 MYISARAEYAIRAMLALAVAHPDRVAAPALAASEEISLAYLQAILLDLRRAGLLFNRRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP D IT+ D+++AT + + + GL+ V A + Sbjct: 61 DGGYSLARPTDSITVGDILRATGGALTSVR-GEPAERATYGGAARGLSRVWLAVDAAIHE 119 Query: 121 VLTQYSIECLVRNRSSI 137 VL + ++ ++ ++ S+ Sbjct: 120 VLDRATLADVLADKVSV 136 >gi|189183482|ref|YP_001937267.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda] gi|189180253|dbj|BAG40033.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda] Length = 148 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y + ++ A + P ++ +IA+ I+ +L ++ L GIV++V+G Sbjct: 1 MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 GG L + TI D++ A EE + C ++ C L C + + Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRC--NNSKGCLALNVRCTAHYLWEELEYKI 118 Query: 119 FDVLTQYSIECLVRNR 134 ++ S++ ++ + Sbjct: 119 KHYFSEISLDDIISGK 134 >gi|167627991|ref|YP_001678491.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597992|gb|ABZ87990.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 136 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A +N P ++IAE ++ + K+L L + IV + RG Sbjct: 3 KISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGIE 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L IT+LDVVKA E+ + EC HK C L GSC ++S + + D+ Sbjct: 63 GGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSSYWKVLNSQLLDL 120 Query: 122 LTQYSIECLVRNR 134 L++ SI +V N+ Sbjct: 121 LSKTSIYDIVNNK 133 >gi|241668545|ref|ZP_04756123.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877080|ref|ZP_05249790.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843101|gb|EET21515.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 136 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A +N P ++IAE ++ + K+L L + IV + RG Sbjct: 3 KISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGIE 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L IT+LDVVKA E+ + EC HK C L GSC +++ R + D+ Sbjct: 63 GGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSNYWRVLNSQLLDL 120 Query: 122 LTQYSIECLVRNR 134 L++ SI +V N+ Sbjct: 121 LSKTSIYDIVNNK 133 >gi|257469482|ref|ZP_05633574.1| hypothetical protein FulcA4_09098 [Fusobacterium ulcerans ATCC 49185] gi|317063726|ref|ZP_07928211.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689402|gb|EFS26237.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 136 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L+Y I+ D ++I+E I LF +IL+ L KA +V +G Sbjct: 1 MRLKNEIEYVFRILLYLTINGDNRIISSNEISEKEEIPHLFSLRILKKLEKADLVLIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + + +IT+ D +++ E + + +C S + G+CG+ +L+ + F Sbjct: 61 AKGGYKLKKDSSEITLKDAIESIEGNICIKDCLESPESCTLRKGNCGVHRILKDIESQFI 120 Query: 120 DVLTQYSIECLVRNR 134 L + L + Sbjct: 121 SRLQDVNFRDLADGK 135 >gi|85703168|ref|ZP_01034272.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. 217] gi|85672096|gb|EAQ26953.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius sp. 217] Length = 153 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + L+ A+ + ++ IS +L ++ L +A +V +VRG Sbjct: 1 MKLSTKGRYAMVALVDIALQPAGAVVTLGDVSRRQDISLPYLEQLFVKLRRAELVTSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 GG RL RPA +I + D++ A +E+ A + + + L + L+A Sbjct: 61 PGGGYRLMRPASEIRVSDILAAVDETIDALHKGAGASGGASGSRAQSMANRLWEGLSAHV 120 Query: 119 FDVLTQYSIECLVRN 133 + L Q + + N Sbjct: 121 YVFLHQTRLSDVAGN 135 >gi|325003478|ref|ZP_08124590.1| rrf2 family protein, putative transcriptional regulator [Pseudonocardia sp. P1] Length = 156 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + ++ + + A P S++A + +L K +Q LV+AG+ E+V G Sbjct: 1 MRMGQGVEWALHCCLNLAW-TGEPVPGSRLAAFYDLPPAYLTKQMQALVRAGVCESVPGP 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114 RGG RL R +++++LDVV A E C + GSC + +R+A Sbjct: 60 RGGFRLVRAPEEVSLLDVVVALEGPEDAFRCTSILGAAPGGDPAADYSGSCAFSLSMRRA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A+ L S+ + + Sbjct: 120 ELAWRRELAARSLADVGDD 138 >gi|229160056|ref|ZP_04288058.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] gi|228623367|gb|EEK80191.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] Length = 140 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +SE FL K+ L KAGIV +V G +GG RL + + ++ DV++A E + Sbjct: 1 MAEFQGLSETFLSKVFGKLSKAGIVSSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60 Query: 90 EC---------FASHKIDC----PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 +C + C P SC + V+ +A + L + ++ L Sbjct: 61 QCKNIVQNGLLYRDEDEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLAWL 114 >gi|332524348|ref|ZP_08400568.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332107677|gb|EGJ08901.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 166 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 13/137 (9%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ RT + + L+ + P ++ I +S ++ ++ L + G+VE+ RG Sbjct: 1 MRMSTRTRFAVNALVDLGLRQQAGPVALAAICGRLQVSLSYMEQVFARLRRQGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R AD ITI DVV A E+ A + + + Sbjct: 61 PGGGYTLGRRADAITIADVVSAVEDRPAPAAEVTPGQA------------LWSELDAVMM 108 Query: 120 DVLTQYSIECLVRNRSS 136 ++ ++E L+ + + Sbjct: 109 QHMSGITLESLLEEQRA 125 >gi|325679872|ref|ZP_08159441.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] gi|324108310|gb|EGC02557.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] Length = 150 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + ++GI L AI+ N S I+ IS+ +L +IL L +AG + + Sbjct: 1 MKISTKVEFGIVALADIAIYSVNGETVSSSDISSRQNISQKYLEQILVALRQAGFIRGQK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKAL 115 G RGG L RPA +I+ +++ + + + D L SC + K Sbjct: 61 GSRGGYTLARPASEISFSEILNGLDNNILADTYVSEDDTDGGLRDKVNSC----IWDKLN 116 Query: 116 NAFFDVLTQYSIECLVR 132 + + ++ + Sbjct: 117 GYMREFTAKMTLADFIE 133 >gi|317502405|ref|ZP_07960570.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087998|ref|ZP_08336921.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896215|gb|EFV18321.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409309|gb|EGG88758.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium 3_1_46FAA] Length = 131 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK +DY IRV+ A+ + I ++ E I F +KILQ + K+G++E RG Sbjct: 1 MLFTKESDYAIRVIR--ALQDGGKKTIKELCELEQIPSAFGYKILQKMNKSGLIEIRRGP 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG +L + + T+ DVV A E F V EC I C + L ++ Sbjct: 59 KGGYQLAKDIGEFTLYDVVTAIEPDFAVMECVHHSCIRNESKEGCAVHRELLGIQHSVEK 118 Query: 121 VLTQYSIECLVRN 133 +L + ++ +++ Sbjct: 119 LLKKKTMADILKK 131 >gi|296106185|ref|YP_003617885.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy] gi|295648086|gb|ADG23933.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy] Length = 139 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 ++Y A H+ IA ++ + KIL+ L AG++ +VRG GG RL RPA +I Sbjct: 1 MVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVSGGYRLQRPAAEI 60 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 ++ ++ A EE EC + DC L G C + R +A L S+E L + Sbjct: 61 SVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETALDSVSLEALAKP 119 Query: 134 RSSIKKI 140 + + Sbjct: 120 TLPTRDV 126 >gi|240139920|ref|YP_002964397.1| putative transcriptional regulator, Rrf2 family [Methylobacterium extorquens AM1] gi|240009894|gb|ACS41120.1| putative transcriptional regulator, Rrf2 family [Methylobacterium extorquens AM1] Length = 150 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 15 MYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 M+ + +A+ IS L KI Q LV+AG+VE +GR GGVRL R A +I Sbjct: 1 MHLTLAERGVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREI 60 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + +V E V +C + CPL+G C L A AFF L + ++ +V Sbjct: 61 RLGRLVADLEGVGTVVDC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVVAG 117 Query: 134 RS 135 + Sbjct: 118 PT 119 >gi|320104168|ref|YP_004179759.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319751450|gb|ADV63210.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida ATCC 43644] Length = 164 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 T+R +Y +R Y A + Y + ++AEA + +L K+LQ L + G++ + RG G Sbjct: 2 FTQRVEYALRATAYLASLDGYNSTTEEVAEATKVPRAYLSKVLQELRRGGVIRSRRGVGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+ L ++T+L VV+A E + C K C L L A+ Sbjct: 62 GIVLAIDPKELTLLRVVQAVEPLQRITTCPLGLKA--HGARLCPLHKRLDDAMAKVEAAF 119 Query: 123 TQYSIECLVRNRS 135 ++ ++ S Sbjct: 120 AGVTLAQVLAEPS 132 >gi|294102885|ref|YP_003554743.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] gi|293617865|gb|ADE58019.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium colombiense DSM 12261] Length = 141 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ + AI + ++AEA +SE L K+ Q LV+ G V + RG G Sbjct: 7 ISEAASLAFHGMGLLAI-SGKRMSTKEMAEAINVSEAHLAKVFQRLVRCGFVTSSRGPGG 65 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G L RPA+ I++LD+ +A E C H+ +CP +C +L+K D L Sbjct: 66 GFELARPAESISLLDIYEAIEGQTDGGYCLL-HQKECPFR-TCIFGDMLKKMTKEIRDFL 123 Query: 123 TQYSIECLVRNR 134 + ++ L R Sbjct: 124 REKNLSELARGE 135 >gi|227549985|ref|ZP_03980034.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077937|gb|EEI15900.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 162 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 9/142 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + T++ L+ + D P +AE I + +L K LQ LV+AGI+ + G Sbjct: 1 MKLPRGTEWMAHCLVALSACEDIGPLAKHTLAEMFDIPDAYLSKQLQQLVRAGIIRSSAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 RGG L RPA +T+LDV+K + + C F + G CG+ + Sbjct: 61 NRGGYFLARPASTVTLLDVIKTVQGDAPLFVCEEVRCRGIFTNDADAIRETGPCGIHHAM 120 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 +A N + D L ++E L + Sbjct: 121 VEAENRWRDSLATVTVEALTQQ 142 >gi|331090359|ref|ZP_08339241.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401244|gb|EGG80834.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium 3_1_46FAA] Length = 141 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TDY +R++ + + + + +I+EA S ++ IL+ L K G+VE +RG Sbjct: 1 MQLNRTTDYVVRIVYFLS-NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVIRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 +GG RL + D I++ DV+K E++ + +C + + +C L + C + Sbjct: 60 KGGFRLKKRPDAISLFDVIKIMEDTICINQCL-NEEENCNLKATDYCPVRRFYLSLQEQI 118 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 L + E L ++ +IF Sbjct: 119 ESELKHMTFEMLRKSGGGADRIF 141 >gi|255020290|ref|ZP_05292358.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756] gi|254970210|gb|EET27704.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756] Length = 162 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y ++ L+Y A P I++ + +L KILQ L K G++++ +G Sbjct: 1 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLRVPAQYLAKILQVLAKRGVLDSYKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG L A+Q+ IL+VV+ E + F C K C +C + + Sbjct: 61 RGGGFVLRPGAEQMNILEVVEMVEGAPFGQGCVLGLKA-CADETACPVHYAWKPLKAQVV 119 Query: 120 DVLTQYSIECLVR 132 ++L + +I + Sbjct: 120 ELLGKQTIGSMAE 132 >gi|296269083|ref|YP_003651715.1| BadM/Rrf2 family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091870|gb|ADG87822.1| transcriptional regulator, BadM/Rrf2 family [Thermobispora bispora DSM 43833] Length = 154 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A D P + ++A+ + +L IL + +AG+V RG Sbjct: 1 MRLSARVDYALRAAAELAAAGDGPTTVGELAQGQDMPPKYLENILLQMRRAGLVRGQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA+QIT+ DV++A + ++ L V + Sbjct: 61 EGGYVLARPANQITLADVIRAVDGPLANVRGERPEEVGYTGAAH-ALQRVWIALRASERA 119 Query: 121 VLTQYSIECLVRNR 134 +L + ++E + + Sbjct: 120 ILERVTLEHVAKGE 133 >gi|226362111|ref|YP_002779889.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4] gi|226240596|dbj|BAH50944.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4] Length = 160 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ ++ + V++ A + +D P + +A + + +L K LQ LV+AGI+ +V G Sbjct: 1 MRMSRGVEWAMHVVLSLAWVDDDRPVSTAALARSYDLPAPYLNKQLQALVRAGILTSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112 GG L R A I++LDVV A E + C + L C ++ +R Sbjct: 61 AAGGFVLTRSAKHISVLDVVTAIEGAEEAFRCTEIRAQGVGADMPAGQLSMPCAVSMAMR 120 Query: 113 KALNAFFDVLTQYSIECL 130 KA A+ L S++ + Sbjct: 121 KADLAWRRELAGQSVDDV 138 >gi|307720334|ref|YP_003891474.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas autotrophica DSM 16294] gi|306978427|gb|ADN08462.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas autotrophica DSM 16294] Length = 137 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K Y IR+L Y A H D ++++E I FL KI+ +VK+G+V ++RG Sbjct: 1 MQLSKSAQYAIRILAYMADHKDSKLLNATELSETLLIPYKFLTKIMTEVVKSGLVVSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG +P +I + +++ +S +C C + C L + + Sbjct: 61 RDGGYSFAKPPSEIMVSEILDIFHDSIKDEQCVLGIGF-CNGMCKCALHDQWMEPKHLMQ 119 Query: 120 DVLTQYSIECLV 131 + + ++E + Sbjct: 120 KMFQESTLEEIA 131 >gi|229154646|ref|ZP_04282763.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] gi|228629044|gb|EEK85754.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] Length = 137 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 11/112 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +SE FL K+ L KA IV +V G +GG RL + + I+ DV++A E + Sbjct: 1 MAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIF 60 Query: 90 EC----------FASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 +C C P SC + V+ +A + L + ++ L Sbjct: 61 QCKNIVQNGLLYRDEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLAWL 112 >gi|148284617|ref|YP_001248707.1| iron-sulfur cluster assembly transcription regulation factor [Orientia tsutsugamushi str. Boryong] gi|146740056|emb|CAM80173.1| iron-sulfur cluster assembly transcription regulation factor [Orientia tsutsugamushi str. Boryong] Length = 148 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT ++ Y + ++ A + P ++ +IA+ I+ +L ++ L GIV++V+G Sbjct: 1 MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118 GG L + TI D++ A EE + C ++ C L C + + Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRC--NNSKGCLALNIRCTAHYLWEELEYKI 118 Query: 119 FDVLTQYSIECLVRNR 134 ++ S++ ++ + Sbjct: 119 KHYFSEISLDDIISGK 134 >gi|88195436|ref|YP_500240.1| hypothetical protein SAOUHSC_01732 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202994|gb|ABD30804.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 116 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 +GG +L PA++I+ D+++ E E S Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP 98 >gi|317488261|ref|ZP_07946828.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|316912643|gb|EFV34185.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] Length = 186 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+R DY R+L + +S IAE I F I LVK G+++TVRG Sbjct: 1 MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+ L +T+L+V++A + ++ C C C + + A Sbjct: 61 RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119 Query: 121 VLTQYSIECLVRNRSS 136 +++ L+ +S Sbjct: 120 YFGAITLKDLIEQGAS 135 >gi|229095595|ref|ZP_04226579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] gi|228687839|gb|EEL41733.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] Length = 140 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 +AE +SE FL K+ L KAGIV +V G +GG RL + + ++ DV++A E + Sbjct: 1 MAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60 Query: 90 EC------------FASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 +C A C P SC + V+ +A + L + ++ L Sbjct: 61 QCKNIVQNGLLYRDEAEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLAWL 114 >gi|265989282|ref|ZP_06101839.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|262999902|gb|EEZ12641.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] Length = 123 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DC 99 GG L PA +I I ++++A + + C + C Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPC 123 >gi|255522661|ref|ZP_05389898.1| hypothetical protein LmonocFSL_15876 [Listeria monocytogenes FSL J1-175] Length = 114 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + IA+ +SE +L +++ PL AGIV+++RG GG L ++IT D+++ E Sbjct: 1 SLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGP 60 Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + E + + + NA DVL Q ++ L+++ Sbjct: 61 IVLVESMEDEEA--------AQRELWTRMRNAVRDVLDQTTLADLLKH 100 >gi|291545758|emb|CBL18866.1| rrf2 family protein (putative transcriptional regulator) [Ruminococcus sp. SR1/5] Length = 137 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY +RV+ A+ + +S+I E I+ F +KIL+ L AG+VE RG Sbjct: 1 MFITRESDYAMRVIR--ALMWEPRLSVSEICERESITAPFAYKILKKLQNAGLVEGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG L R +++++ ++ A + + EC + CP G C L++ + Sbjct: 59 HGGYALKRDPEELSLYEIYSAIDPDMSIIECL-NGTYQCPRNGQDGVPCHAHDELQEIQD 117 Query: 117 AFFDVLTQYSIECL 130 + +L + S++ L Sbjct: 118 QLWTMLRRKSMKDL 131 >gi|266625010|ref|ZP_06117945.1| Rrf2 family protein [Clostridium hathewayi DSM 13479] gi|288863105|gb|EFC95403.1| Rrf2 family protein [Clostridium hathewayi DSM 13479] Length = 131 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 1/130 (0%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +RV++ A H + + ++AE IS+ +L I++ L+K ++ + GR Sbjct: 2 ISTKGRYALRVMIDLAEHGGEGYIPLKEVAERQEISKKYLEIIVKELIKGKMLIGLGGRG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +LCR ++ + ++++ E S C + C C + + D Sbjct: 62 GGYKLCRKPEEYKVGEILELMEGSLATVACLSKDAKPCSRAAICKTLPLWSEFDKMVHDY 121 Query: 122 LTQYSIECLV 131 + ++ L+ Sbjct: 122 FYEKTLADLL 131 >gi|256393946|ref|YP_003115510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256360172|gb|ACU73669.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 159 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + ++G+ L+ A + P ++AE + +L K LQPLV+AGI+ + G Sbjct: 1 MQMGEGVEWGLHCLLALAWLEEHTPVATGRLAEIFELPPEYLKKRLQPLVRAGILASSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-------PLVGSCGLTSVLR 112 RGG L R ++IT++DVV A E C K CG+ +R Sbjct: 61 ARGGYALARRPEEITLMDVVAAVEGREEAFRCTEIRKQGAGALAEADEFGEPCGIAKAMR 120 Query: 113 KALNAFFDVLTQYSIECLV 131 +A A+ L ++ ++ Sbjct: 121 RAEMAWRRELAAQTVADVM 139 >gi|121997026|ref|YP_001001813.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121588431|gb|ABM61011.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 158 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + Y + +M A++ D P +++I+ IS +L ++ + + G+V VRG Sbjct: 1 MRLSTKGRYAVTAMMELALNTDKGPVTLAEISHTQGISLSYLEQLFARMRRDGLVVGVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA +I++ ++ A +E + D C + + Sbjct: 61 PGGGYRLARPAGEISVAQIITAVDEGTAQGQGVGEGSSD---DDRCLTHDLWVDLSRQIY 117 Query: 120 DVLTQYSIECLVRN 133 D L ++E + R+ Sbjct: 118 DFLNGITLEQMARD 131 >gi|291300389|ref|YP_003511667.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569609|gb|ADD42574.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 162 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +++ ++ I + A N S++A + +L K LQ L +AGI+ + G Sbjct: 5 MKMSEGVEWAIHSCLNLAWANRDAIPASRLAAYHELPPAYLNKQLQALCRAGILTSTTGP 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114 RGG RL RP D I+ +DVV A E C + +C ++ +R A Sbjct: 65 RGGFRLARPLDDISFMDVVTAIEGGDDAFACTEIRQRGPNGGPAENFPHTCAVSRTMRAA 124 Query: 115 LNAFFDVLTQYSIEC 129 + L Q+++ Sbjct: 125 ELTWRRELAQHTLAD 139 >gi|257791023|ref|YP_003181629.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|257474920|gb|ACV55240.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] Length = 186 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+R DY R+L + +S IAE I F I LVK G+++TVRG Sbjct: 1 MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+ L +T+L+V++A + ++ C C C + + A Sbjct: 61 RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119 Query: 121 VLTQYSIECLVRNRSS 136 +++ L+ +S Sbjct: 120 YFGAITLKDLIEQGAS 135 >gi|300777967|ref|ZP_07087825.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503477|gb|EFK34617.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 138 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 5/130 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++KR Y ++ ++ A + N S IA+ I FL +IL L +A +V + +G+ Sbjct: 2 MSKRCKYALKAMVRLARNYNQGFLPTSVIAQDENIPRKFLEQILLELKRAKLVNSKQGKV 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +++++ D+ + + + C F DC C L L Sbjct: 62 GGYYLLKSPNEVSLADIYRIFDGPIALTPCVSLNFYEACDDCVDEAVCYLRKELMIVREK 121 Query: 118 FFDVLTQYSI 127 + + ++ Sbjct: 122 TRTSMMEATL 131 >gi|149278443|ref|ZP_01884580.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp. BAL39] gi|149230813|gb|EDM36195.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp. BAL39] Length = 156 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T + +YG+R+L+ A I+ I+E+ +S ++ K+ + L AG + + G Sbjct: 1 MKITAQEEYGLRILLRIARQGKEGLSIAAISESEGLSTAYVAKLTRLLRMAGYINSTPGN 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117 +GG L PA +I I V+K + F + C C + S+ + Sbjct: 61 KGGYSLAMPAAEININKVLKVLGGALFSQRFCEEYPGAVKLCTNSIDCSVRSLWQMIQLT 120 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143 +L Q S++ L+ + + Sbjct: 121 VDQLLDQVSLKDLLSPEQQSNFLLES 146 >gi|281418212|ref|ZP_06249232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|281409614|gb|EFB39872.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum JW20] gi|316941312|gb|ADU75346.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 1313] Length = 148 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + ++ A +N + I+E IS++FL ++ L KA IV + + Sbjct: 1 MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117 G +GG +L R QIT+LDV+ + E + E D P + +SV Sbjct: 61 GAQGGYQLTRTPSQITVLDVLLSVE--VSLFEQTQETVSDKAPDIEQALRSSVFDVLDKN 118 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 L+ +I LV K Sbjct: 119 IKQTLSTITIADLVAEAEKHKD 140 >gi|256042842|ref|ZP_05445789.1| RfF2 family protein [Brucella melitensis bv. 1 str. Rev.1] Length = 100 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+ Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DC 99 GG L PA +I I ++++A + + C + C Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPC 100 >gi|153815582|ref|ZP_01968250.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756] gi|317502129|ref|ZP_07960308.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium 8_1_57FAA] gi|145847013|gb|EDK23931.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756] gi|316896474|gb|EFV18566.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium 8_1_57FAA] Length = 140 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + TDY +R++ + + + + +I+EA S ++ IL+ L K G+VE +RG Sbjct: 1 MQLNRTTDYVVRIVYFLS-NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVIRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 +GG RL + D I++ DV+K E++ + +C + + +C L + C + Sbjct: 60 KGGFRLKKRPDAISLFDVIKIMEDTICINQCL-NEEENCNLKATDYCPVRRFYLSLQEQI 118 Query: 119 FDVLTQYSIECL 130 L + E L Sbjct: 119 ESELKHMTFEML 130 >gi|57239141|ref|YP_180277.1| hypothetical protein Erum4120 [Ehrlichia ruminantium str. Welgevonden] gi|57161220|emb|CAH58136.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 156 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M T R Y I ++ A + P R+S IA +SE +L +++ L K G++ Sbjct: 1 MLTTARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +G GG L IT+ ++++ E+ + C + C + Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120 Query: 115 LNAFFDVLTQYSIECLVRNR 134 N D L S+E +V N Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140 >gi|77918499|ref|YP_356314.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77544582|gb|ABA88144.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter carbinolicus DSM 2380] Length = 132 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +T+ DY IR +++ + +P + +++ I FL KIL L+ A +V + RGR Sbjct: 2 ITREADYCIRTILHLSRPEQRKHPVPVDELSRQMTIPAPFLRKILAKLINADLVHSHRGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG+ + +QI++L++++ + + +C S + C G+C + ++K N Sbjct: 62 NGGLTIKGEPEQISLLEILQVADGKGLLLNQCLESEGV-CTHQGTCTVHDAMKKLQNVME 120 Query: 120 DVLTQYSIECLV 131 + L + + L+ Sbjct: 121 NHLKAITFDQLI 132 >gi|294506739|ref|YP_003570797.1| transcriptional regulator [Salinibacter ruber M8] gi|294343067|emb|CBH23845.1| Transcriptional regulator [Salinibacter ruber M8] Length = 162 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 14/140 (10%) Query: 1 MHLTKRTDYGIRVLMYCAI-------------HNDYPNRISQIAEACCISELFLFKILQP 47 M L+K +YG+R ++Y I I++ I FL K+ Q Sbjct: 1 MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 60 Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 L AG++ + RG GGV L R D I++ ++V A + + EC C C L Sbjct: 61 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEECVLGL-PGCGEAEPCPL 119 Query: 108 TSVLRKALNAFFDVLTQYSI 127 + + + ++ Sbjct: 120 HEHWTEERDRMKTTFQRTAL 139 >gi|222054747|ref|YP_002537109.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221564036|gb|ACM20008.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 153 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 71/143 (49%), Gaps = 5/143 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T YG++ ++Y A +++ P I+ +A I + FL IL L G++++ +G+ Sbjct: 2 ISKKTKYGLKAMIYLAKVYDQGPVLIADLAREEKIPKKFLELILLTLKNHGVLQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I++ +V+ + C + +C +CG+ V++ +A Sbjct: 62 GGYYLGKLPKEISLGKLVRILDGPLAPVPCVSETAYAKCDECLDERTCGIRLVMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 ++L S+ ++ +++ Sbjct: 122 IAEILDGTSLADVLERSEKAEQL 144 >gi|325107421|ref|YP_004268489.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Planctomyces brasiliensis DSM 5305] gi|324967689|gb|ADY58467.1| transcriptional regulator, BadM/Rrf2 family [Planctomyces brasiliensis DSM 5305] Length = 140 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 3/140 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+K +Y +R ++ A D P IA +L +++Q L AG+V++ G G Sbjct: 2 LSKTAEYALRAVVLLASQPDKPFSADVIAGKTKAPRRYLTRVMQDLAAAGLVQSRPGPGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G + + D ++ILDV+ A + + C K L C L + L KA A Sbjct: 62 GYEMAKGIDAVSILDVINAVDPVERIRSCPLGLKSHTEL---CPLHAELDKAYAATEKAF 118 Query: 123 TQYSIECLVRNRSSIKKIFN 142 +++ L+ + + I + + Sbjct: 119 RNVTLKQLIESANPIVPLCD 138 >gi|149369729|ref|ZP_01889581.1| transcriptional regulator, rrf2 family protein [unidentified eubacterium SCB49] gi|149357156|gb|EDM45711.1| transcriptional regulator, rrf2 family protein [unidentified eubacterium SCB49] Length = 138 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T YGI+ L Y A P +I+ IA + IS+ FL IL L KAG++ + +G+ Sbjct: 2 LSRKTKYGIKALTYLAQQEGNDPTQIAVIAVSENISQKFLESILLTLRKAGVLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + AD I I + + E + C F DCP +C + +++ + ++ Sbjct: 62 GGYYLLKDADSIKISQIYRVLEGPIAMVPCVSLNFYEKCDDCPDEDTCSVHNLMIQVRDS 121 Query: 118 FFDVLTQYSIECLVRNR 134 ++L ++ ++ + Sbjct: 122 TLNILENTTLADIISEQ 138 >gi|58579092|ref|YP_197304.1| hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str. Welgevonden] gi|58417718|emb|CAI26922.1| Hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str. Welgevonden] Length = 160 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M T R Y I ++ A + P R+S IA +SE +L +++ L K G++ Sbjct: 5 MLTTARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +G GG L IT+ ++++ E+ + C + C + Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 124 Query: 115 LNAFFDVLTQYSIECLVRNR 134 N D L S+E +V N Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144 >gi|229098964|ref|ZP_04229899.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] gi|229105131|ref|ZP_04235782.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28] gi|229117993|ref|ZP_04247353.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228665442|gb|EEL20924.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228678312|gb|EEL32538.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28] gi|228684462|gb|EEL38405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] Length = 151 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A +VL ++E LV N +S IK+ Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151 >gi|296140570|ref|YP_003647813.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Tsukamurella paurometabola DSM 20162] gi|296028704|gb|ADG79474.1| transcriptional regulator, BadM/Rrf2 family [Tsukamurella paurometabola DSM 20162] Length = 159 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M + + ++ V + ++ P S++AE+ + +L K LQ L +AGI E++ Sbjct: 1 MRMNEGVEWAAHVCVLLHWLDEGDLTPVPASRLAESYDLPPAYLGKQLQALARAGITESL 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSV 110 GRRGG+RL R +IT++DVV A E C S CG+ Sbjct: 61 PGRRGGIRLARSTAEITLMDVVSAIEGPSDAFACTEIRQRGMNSDNPRSDFTAPCGIAHA 120 Query: 111 LRKALNAFFDVLTQYSIECLVR 132 +R A ++ L SI L Sbjct: 121 MRGAELSWRRELAATSIADLAA 142 >gi|229019725|ref|ZP_04176531.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] gi|229025951|ref|ZP_04182341.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228735352|gb|EEL85957.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228741570|gb|EEL91764.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] Length = 151 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A +VL ++E LV N +S IK+ Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151 >gi|78187526|ref|YP_375569.1| hypothetical protein Plut_1672 [Chlorobium luteolum DSM 273] gi|78167428|gb|ABB24526.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum DSM 273] Length = 177 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K TDY +R L+ A IA I FL ++LQ L++ +V + G Sbjct: 21 MKVLNKNTDYAVRALLSLAGSQGVYLSAKTIATEQDIPYQFLRRLLQELIRHRLVVSREG 80 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L R D I + ++++ + V+EC K+ C C L + + Sbjct: 81 ASGGFKLDRDPDGIALRELIEIFQGPVQVSECLFRKKL-CGNRARCVLRHQILRIEQVVR 139 Query: 120 DVLTQYSIECLVRN 133 +I L+ + Sbjct: 140 AEFENITIGSLLGD 153 >gi|206602829|gb|EDZ39310.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 141 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R +Y +R L+ A+ D +QIA I + FL +IL LVK GIVE+ RG R Sbjct: 4 RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 G L + + I++ ++ E + + ++ + V Sbjct: 64 GKYCLGQRPEDISLYRLLAMVEGEIVFFDPATPPGP--------AIQTLYSDIRDGLVGV 115 Query: 122 LTQYSIECLV----RNRSSIKKIF 141 L +++++ V ++RS + +F Sbjct: 116 LDRFTLDAFVEAAGKDRSETRPMF 139 >gi|117926693|ref|YP_867310.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1] gi|117610449|gb|ABK45904.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp. MC-1] Length = 153 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K+ Y I ++ A + P +I ++ + + +L +++Q LVKAGI++ +RG Sbjct: 3 KFSKKLLYAIEAVVDIAYNSGGEPVQIREVTSRQGVPQRYLEQVMQRLVKAGILKGIRGP 62 Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + +I++ D+ + A E S P+ G+ + V + Sbjct: 63 KGGYLLAKERSKISVGDIARVAMELGDEGNNGLPSDVATGPI-GTAVIRPVWGEFQEEIL 121 Query: 120 DVLTQYSIECL 130 ++ + S+E L Sbjct: 122 VMMDKVSVEDL 132 >gi|228993237|ref|ZP_04153158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228999285|ref|ZP_04158865.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|229006840|ref|ZP_04164473.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228754462|gb|EEM03874.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228760482|gb|EEM09448.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|228766563|gb|EEM15205.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] Length = 151 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R D+IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 69 -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A VL +++ LV N +S IKK Sbjct: 128 AMESVLANVTVQQLVTNLQSKIKK 151 >gi|169805235|gb|ACA83733.1| putative transcriptional regulator [Rhodothermus marinus] Length = 150 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + + A N + +++ S L +I+ L AG+ + +RG Sbjct: 8 ISLSGRQALAAMQVLAQQNHGRFVPVRRLSRMIGASPHTLARIMLRLTAAGLTDALRGPG 67 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GGVRL RPA +IT+ ++++ + + C + C C L ++ + Sbjct: 68 GGVRLARPAHEITLFEILQEIDGPEVLNRCILGLGV-CNEARPCPLHAIWFPCRQQLRQM 126 Query: 122 LTQYSIECLVR 132 L + ++ L+ Sbjct: 127 LAETTLADLIH 137 >gi|124514277|gb|EAY55791.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] Length = 141 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 12/144 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R +Y +R L+ A+ D +QIA I + FL +IL LVK GIVE+ RG R Sbjct: 4 RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 G L + ++I++ ++ E + + ++ + V Sbjct: 64 GKYCLGQRPEEISLYRLLAMVEGEIVFFDPATPPGP--------AIQTLYSDIRDGLVGV 115 Query: 122 LTQYSIECLV----RNRSSIKKIF 141 L +++++ V ++R+ + +F Sbjct: 116 LDRFTLDAFVEAAGKDRNETRPMF 139 >gi|190890245|ref|YP_001976787.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218507620|ref|ZP_03505498.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] gi|190695524|gb|ACE89609.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 166 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + I + + + + +AE +S +L K LQ L AGI++TV G Sbjct: 1 MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 +GG RL + A++I++LD++ A E C + P+ C +++ + + Sbjct: 61 PKGGYRLAKAAEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + L + SI L Sbjct: 121 AERVYRAELAKTSIADL 137 >gi|238926961|ref|ZP_04658721.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238885195|gb|EEQ48833.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 147 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI +++ A P I I+E IS+++L ++ L ++ +V +++ Sbjct: 1 MKISAKGRYGIASMVFLARSYGTSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L RP IT +++ A E + E S + + Sbjct: 61 GSQGGYQLARPPHAITAYEILSAIE--IALIERTGSASEKMEKLNFILSRDLFDVLDQNI 118 Query: 119 FDVLTQYSIECLV 131 + L ++E L+ Sbjct: 119 HNTLNAVTLEDLL 131 >gi|125974067|ref|YP_001037977.1| BadM/Rrf2 family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714292|gb|ABN52784.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum ATCC 27405] Length = 151 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 5/142 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + ++ A +N + I+E IS++FL ++ L KA IV + + Sbjct: 4 MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 63 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117 G +GG +L R QIT+LDV+ + E + E D P + +SV Sbjct: 64 GVQGGYQLTRTPSQITVLDVLLSVE--VSLFEQTQETVSDKAPDIEQALRSSVFDVLDKN 121 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 L+ +I LV K Sbjct: 122 IKQTLSTITIADLVAEAEKHKD 143 >gi|118479660|ref|YP_896811.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|228948230|ref|ZP_04110514.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229032151|ref|ZP_04188127.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|229163495|ref|ZP_04291446.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] gi|229175215|ref|ZP_04302731.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3] gi|229186740|ref|ZP_04313898.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] gi|118418885|gb|ABK87304.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] gi|228596753|gb|EEK54415.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] gi|228608351|gb|EEK65657.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3] gi|228620064|gb|EEK76939.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] gi|228729157|gb|EEL80157.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|228811588|gb|EEM57925.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 151 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 128 AMENVLANVTVDQLVTNLKSKMK 150 >gi|65321873|ref|ZP_00394832.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] gi|228903025|ref|ZP_04067164.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 4222] gi|228910330|ref|ZP_04074146.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 200] gi|228917145|ref|ZP_04080703.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923250|ref|ZP_04086540.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929554|ref|ZP_04092573.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935816|ref|ZP_04098628.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941684|ref|ZP_04104231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954776|ref|ZP_04116797.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228967601|ref|ZP_04128624.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228974611|ref|ZP_04135177.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981206|ref|ZP_04141506.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407] gi|228987757|ref|ZP_04147868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048212|ref|ZP_04193781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676] gi|229072011|ref|ZP_04205221.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] gi|229081759|ref|ZP_04214252.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2] gi|229093603|ref|ZP_04224704.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|229111969|ref|ZP_04241513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15] gi|229124071|ref|ZP_04253263.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201] gi|229129791|ref|ZP_04258758.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4] gi|229141238|ref|ZP_04269777.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26] gi|229147065|ref|ZP_04275425.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24] gi|229152700|ref|ZP_04280887.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550] gi|229158115|ref|ZP_04286184.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] gi|229180772|ref|ZP_04308110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W] gi|229192705|ref|ZP_04319664.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876] gi|229198656|ref|ZP_04325357.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293] gi|228584815|gb|EEK42932.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293] gi|228590795|gb|EEK48655.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876] gi|228602750|gb|EEK60233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W] gi|228625344|gb|EEK82102.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] gi|228630763|gb|EEK87405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550] gi|228636453|gb|EEK92923.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24] gi|228642279|gb|EEK98571.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26] gi|228653707|gb|EEL09578.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4] gi|228659373|gb|EEL15021.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201] gi|228671533|gb|EEL26833.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15] gi|228689812|gb|EEL43618.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|228701604|gb|EEL54097.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2] gi|228711170|gb|EEL63135.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] gi|228723199|gb|EEL74575.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676] gi|228772031|gb|EEM20486.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778406|gb|EEM26673.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407] gi|228785014|gb|EEM33027.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792092|gb|EEM39671.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228804896|gb|EEM51494.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817896|gb|EEM63974.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823873|gb|EEM69693.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830133|gb|EEM75751.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836456|gb|EEM81807.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842563|gb|EEM87653.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849282|gb|EEM94120.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 200] gi|228856618|gb|EEN01139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 4222] Length = 151 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 128 AMENVLANVTVDQLVTNLKSKMK 150 >gi|302338626|ref|YP_003803832.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta smaragdinae DSM 11293] gi|301635811|gb|ADK81238.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta smaragdinae DSM 11293] Length = 126 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T+Y + ++ A + D + +AE +S +L KIL LVK G + + G Sbjct: 1 MKYTKATNYALHTMLIMAKNADKRISVQHLAEKQDLSPTYLSKILTKLVKGGFISSFSGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + + I+ LD++ E + EC + + +C + V+ A Sbjct: 61 HGGYALPQNWENISFLDIIHCMEGKSSLFECCLNEEEEC------SIKKVMLLAEEKMEA 114 Query: 121 VLTQYSIECLVR 132 L I L+R Sbjct: 115 DLKGTRISDLIR 126 >gi|223040640|ref|ZP_03610910.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus RM3267] gi|222878098|gb|EEF13209.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus RM3267] Length = 134 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK ++Y + L+Y A D P+ + ++ IS+ FL KILQ L + GI+ + +G Sbjct: 1 MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILISFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L + I+I V+++ E+ V EC + C + + + Sbjct: 60 NGGFMLAQKPGDISIKRVIESAEKRKMAVFECSISQEGCSSSKNRMCQIWPMFSALQSRI 119 Query: 119 FDVLTQYSIECLVRN 133 D L ++ +++ Sbjct: 120 DDFLDTITLANIMKK 134 >gi|228960772|ref|ZP_04122410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798907|gb|EEM45883.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 151 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R GI +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 9 MGISSRFTVGIHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 128 AMENVLANVTVDQLVTNLKSKMK 150 >gi|251798602|ref|YP_003013333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247546228|gb|ACT03247.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 144 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L I D N IA + + + + ++L L KAG+V+ VR Sbjct: 1 MKISSRFSIAVHILSLLEISKDAHNTSEWIAGSVNTNPVIIRRLLGQLKKAGLVQ-VRAG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LD+ +A + E + DCP+ S L VL+K+ + Sbjct: 60 TGGSYLTKEMSEITLLDIFRAVDVVEEGQLFHIHEGPNPDCPVGASIQVVLELVLKKSQD 119 Query: 117 AFFDVLTQYSIECLVRN 133 A VL Q ++E LV + Sbjct: 120 AMESVLAQITLEELVAD 136 >gi|72160826|ref|YP_288483.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX] gi|71914558|gb|AAZ54460.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX] Length = 155 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TD +R++M A+ + +A + K + L + G+VE RGR Sbjct: 1 MRLTTFTDLSLRIVMRLAVAGEETLTTRSVAGMLAVPYTHAAKAVARLSEMGLVEARRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL T+ +V+ E S V C CPL +C L LR+A AFF Sbjct: 61 GGGLRLTPAGRAATVGSIVRELEGSKDVVAC--EDDPPCPLRAACRLRGELRRAQEAFFA 118 Query: 121 VLTQYSIECLVRNRSS 136 L + ++E LV + + Sbjct: 119 ALDEVTVESLVASPTG 134 >gi|317050737|ref|YP_004111853.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] gi|316945821|gb|ADU65297.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum S5] Length = 147 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 2/136 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K TDY +R+ +Y A + ++S+I + +++ + K++Q L + G+V + G+ GG+ Sbjct: 7 KETDYALRIAVYLANKQER-VKVSEICQKLNLTKPVVIKVIQMLKRHGLVASKTGKYGGL 65 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 L P ++I++ DV+ + + C C L C ++ F L Sbjct: 66 SLAHPPEEISVYDVLVSMSADHSINTCLEDASF-CQLQPICRISRFFCDIQRDFNARLKS 124 Query: 125 YSIECLVRNRSSIKKI 140 + L + ++ + Sbjct: 125 VKLAGLTFDDEQLEAL 140 >gi|229087063|ref|ZP_04219215.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44] gi|228696256|gb|EEL49089.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44] Length = 143 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R D+IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 61 -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 119 Query: 117 AFFDVLTQYSIECLVRNRSS 136 A +VL +++ LV N S Sbjct: 120 AMENVLANVTVQQLVTNLQS 139 >gi|30264575|ref|NP_846952.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42783680|ref|NP_980927.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47530042|ref|YP_021391.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187398|ref|YP_030650.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49481494|ref|YP_038559.1| Rrf2 family protein; transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140996|ref|YP_085834.1| Rrf2 family protein; transcriptional regulator [Bacillus cereus E33L] gi|165871451|ref|ZP_02216098.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167635603|ref|ZP_02393915.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167641682|ref|ZP_02399927.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170688290|ref|ZP_02879500.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|170708378|ref|ZP_02898822.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|177653127|ref|ZP_02935414.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190566975|ref|ZP_03019891.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196034358|ref|ZP_03101767.1| rrf2 family protein [Bacillus cereus W] gi|196039250|ref|ZP_03106556.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|196044861|ref|ZP_03112095.1| rrf2 family protein [Bacillus cereus 03BB108] gi|206969656|ref|ZP_03230610.1| rrf2 family protein [Bacillus cereus AH1134] gi|206977724|ref|ZP_03238615.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217961991|ref|YP_002340561.1| rrf2 family protein [Bacillus cereus AH187] gi|218235575|ref|YP_002369303.1| rrf2 family protein [Bacillus cereus B4264] gi|218899663|ref|YP_002448074.1| rrf2 family protein [Bacillus cereus G9842] gi|218905732|ref|YP_002453566.1| rrf2 family protein [Bacillus cereus AH820] gi|222097974|ref|YP_002532031.1| rrf2 family protein; transcriptional regulator [Bacillus cereus Q1] gi|225866481|ref|YP_002751859.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227817288|ref|YP_002817297.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229601070|ref|YP_002868788.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254687004|ref|ZP_05150862.1| RRF2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254724567|ref|ZP_05186350.1| RRF2 family protein [Bacillus anthracis str. A1055] gi|254736610|ref|ZP_05194316.1| RRF2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254741648|ref|ZP_05199335.1| RRF2 family protein [Bacillus anthracis str. Kruger B] gi|254754754|ref|ZP_05206789.1| RRF2 family protein [Bacillus anthracis str. Vollum] gi|254757586|ref|ZP_05209613.1| RRF2 family protein [Bacillus anthracis str. Australia 94] gi|296504983|ref|YP_003666683.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|301056017|ref|YP_003794228.1| Rrf2 family protein; putative transcriptional regulator [Bacillus anthracis CI] gi|30259233|gb|AAP28438.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|42739609|gb|AAS43535.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|47505190|gb|AAT33866.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181325|gb|AAT56701.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49333050|gb|AAT63696.1| Rrf2 family protein; possible transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974465|gb|AAU16015.1| Rrf2 family protein; possible transcriptional regulator [Bacillus cereus E33L] gi|164712748|gb|EDR18278.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167510389|gb|EDR85790.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167529023|gb|EDR91778.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170126753|gb|EDS95636.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|170667796|gb|EDT18549.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172081651|gb|EDT66722.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190561966|gb|EDV15935.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|195992900|gb|EDX56859.1| rrf2 family protein [Bacillus cereus W] gi|196024349|gb|EDX63022.1| rrf2 family protein [Bacillus cereus 03BB108] gi|196029877|gb|EDX68478.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206735344|gb|EDZ52512.1| rrf2 family protein [Bacillus cereus AH1134] gi|206744025|gb|EDZ55441.1| rrf2 family protein [Bacillus cereus H3081.97] gi|217066878|gb|ACJ81128.1| rrf2 family protein [Bacillus cereus AH187] gi|218163532|gb|ACK63524.1| rrf2 family protein [Bacillus cereus B4264] gi|218536473|gb|ACK88871.1| rrf2 family protein [Bacillus cereus AH820] gi|218544856|gb|ACK97250.1| rrf2 family protein [Bacillus cereus G9842] gi|221242032|gb|ACM14742.1| Rrf2 family protein; possible transcriptional regulator [Bacillus cereus Q1] gi|225785815|gb|ACO26032.1| rrf2 family protein [Bacillus cereus 03BB102] gi|227005099|gb|ACP14842.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229265478|gb|ACQ47115.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|296326035|gb|ADH08963.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|300378186|gb|ADK07090.1| Rrf2 family protein; possible transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324328400|gb|ADY23660.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942291|gb|AEA18187.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 143 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 61 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 120 AMENVLANVTVDQLVTNLKSKMK 142 >gi|148265911|ref|YP_001232617.1| BadM/Rrf2 family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399411|gb|ABQ28044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter uraniireducens Rf4] Length = 153 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 67/142 (47%), Gaps = 5/142 (3%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K+T Y ++ ++Y A +++ P I+ +A I + FL IL L GI+++ +G+ Sbjct: 2 ISKKTKYALKAIIYLARVYDKGPILIADLARDERIPKKFLELILLTLKNNGILQSRKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117 GG L + I++ V++ E C + +C +CG+ +++ +A Sbjct: 62 GGYYLGKSPKDISMGTVIRILEGPLAPVPCVSETAYAKCDECVDERTCGIRLMMKDVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 +L ++ ++ ++ Sbjct: 122 MAKILDGTTLADVLERTEKAEQ 143 >gi|30022586|ref|NP_834217.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|29898144|gb|AAP11418.1| RRF2 family protein [Bacillus cereus ATCC 14579] Length = 145 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 3 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 62 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A Sbjct: 63 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 121 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A +VL +++ LV N S K Sbjct: 122 AMENVLANVTVDQLVTNLKSKMK 144 >gi|146299258|ref|YP_001193849.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153676|gb|ABQ04530.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium johnsoniae UW101] Length = 136 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L Y A N+ P +I++IA++ IS FL IL L +G + +G+ Sbjct: 2 LSKKTKYGIKALTYLARRENNEPVQIAEIAKSEHISIKFLESILLLLRNSGFLGAKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + I++ V + E + C F DC +C ++ + + Sbjct: 62 GGYYLIKDPKDISMAKVYRILEGPIALLPCASHNFYEKCDDCDDESTCAARRLMTEVRDN 121 Query: 118 FFDVLTQYSIECLV 131 +L S+ + Sbjct: 122 TLKILESNSLADIA 135 >gi|325971574|ref|YP_004247765.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Spirochaeta sp. Buddy] gi|324026812|gb|ADY13571.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy] Length = 138 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R YG+R+L+ A H N+ P ++ +A+ +SE +L ++ L + G + +V+G Sbjct: 1 MKISTRGRYGLRLLVDIAEHSNEGPIALTVVAKRQDLSEKYLQQVALLLTRGGFLTSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L R + I DV+ E + E + + L V +K Sbjct: 61 SGGGYLLERSPASMMIYDVLDLLEGNICFEEPVQGEENA--IERVIRLH-VYQKLDQEVK 117 Query: 120 DVLTQYSIECLVR 132 V ++ + + Sbjct: 118 KVFEGLTLADVTK 130 >gi|268317560|ref|YP_003291279.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] gi|262335094|gb|ACY48891.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus DSM 4252] Length = 144 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + + A N + +++ S L +I+ L AG+ + +RG Sbjct: 2 ISLSGRQALAAMQVLAQQNHGRFVPVRRLSRMIGASPHTLARIMLRLTAAGLTDALRGPG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GGVRL RPA +IT+ ++++ + + C + C C L ++ + Sbjct: 62 GGVRLARPAHEITLFEILQEIDGPEVLNRCILGLGV-CNEARPCPLHAIWFPCRQQLRQM 120 Query: 122 LTQYSIECLVR 132 L + ++ L+ Sbjct: 121 LAETTLADLIH 131 >gi|307720665|ref|YP_003891805.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas autotrophica DSM 16294] gi|306978758|gb|ADN08793.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas autotrophica DSM 16294] Length = 134 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ ++Y I L+ + + P ++ IS+ FL KILQ L KA I+ + +G Sbjct: 1 MLITRASEYAILSLILLS-KAESPMDSDTLSRELSISKSFLAKILQSLAKAQILNSYKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L + I +L+V E V EC S + DCP +C + L K Sbjct: 60 NGGFALKKEPQDINMLEVASCVEGKAPAVFECAPSLE-DCPSEKASTCSIWPFLHKLQGK 118 Query: 118 FFDVLTQYSIECLVRN 133 L ++ L+ + Sbjct: 119 IDLFLANLTLADLLND 134 >gi|313672403|ref|YP_004050514.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939159|gb|ADR18351.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 136 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T ++ Y I L+Y + N P S+I+ + I + FL L L GI+++ +G Sbjct: 1 MQTTAQSIYAIYALVYISYRN-KPVNPSEISNSSSIPKRFLEITLNKLKHHGILKSKKGP 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +P ++I++ D++ ATE + + +C L C L + Sbjct: 60 NGGFILSKPPEKISLYDILSATESNLSLFDCEK------HLPTGCHFKQFLESINCQHLN 113 Query: 121 VLTQYSIECLVRNRSS 136 +L ++E + + S Sbjct: 114 LLKSITLEDIRKQESQ 129 >gi|167462502|ref|ZP_02327591.1| rrf2 family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 142 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L A++++ +A + + + + +I+ L KAG+V+ VR Sbjct: 1 MKISSRFSVGVHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + D+IT+LD+ KA + E + + +CP+ + L VL +A Sbjct: 60 TGGAYLLKSLDEITLLDIYKAVDVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQE 119 Query: 117 AFFDVLTQYSIECLV 131 A VL +++ LV Sbjct: 120 AMEQVLKDITMDELV 134 >gi|255658792|ref|ZP_05404201.1| Rrf2 family protein [Mitsuokella multacida DSM 20544] gi|260849190|gb|EEX69197.1| Rrf2 family protein [Mitsuokella multacida DSM 20544] Length = 148 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 11/137 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ + Y A + P I I+E IS+++L ++ L +A +V +++ Sbjct: 1 MKISAKGRYGLAAMTYLARNYAAGTPITIVSISEKLGISKIYLEQVFSLLKRARLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE----ESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 G +GG +L RP +IT D++ + E E A ++D + SC T + Sbjct: 61 GSQGGYQLARPPREITPYDILSSIELSLMEKTAPAAQEKMPELD-RALASCVFTPL---- 115 Query: 115 LNAFFDVLTQYSIECLV 131 A L+ S++ ++ Sbjct: 116 DEAIQKALSAISLDDIL 132 >gi|315924880|ref|ZP_07921097.1| Rrf2 family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621779|gb|EFV01743.1| Rrf2 family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 148 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI ++ + + ++ +AE IS+++L +I L ++G+V +V+ Sbjct: 1 MRISAKGRYGIASMIELSWMSREGHHVPVAILAENLGISKIYLEQIFSLLKRSGLVASVK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L +PA +I++ +++KA E+ F E + P + S V R Sbjct: 61 GAQGGYHLAKPASEISVYEILKALEQILFEPTESSVDERA--PAIESVMQKDVFRPLDAT 118 Query: 118 FFDVLTQYSIECLVRN 133 +L + + L+ + Sbjct: 119 IETLLAKIRLSDLLED 134 >gi|255035951|ref|YP_003086572.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] gi|254948707|gb|ACT93407.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] Length = 145 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 7/143 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR + Y A ++ I +IA E FL KILQ L K G+V + +G Sbjct: 4 FSKTCEYAIRAVFYIAQKSEEGQKVGIREIALHINSPEPFLAKILQKLSKDGLVLSSKGP 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L Q ++ D+V+A E C C C L + +K N Sbjct: 64 HGGFYLDPGGLQRSLADIVQAIEGDSIFNGCGMGLSY-CSQANPCPLHNDFKKIRNQIVI 122 Query: 121 VLTQYSI----ECLVRNRSSIKK 139 +L SI E L++ + ++ K Sbjct: 123 MLRNTSIGKFNEGLIQGQLTLNK 145 >gi|218678083|ref|ZP_03525980.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 166 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + I + + + + +A+ +S +L K LQ L AGI++TV G Sbjct: 1 MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAQFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113 +GG RL + +I++LD++ A E C + D C +++ + + Sbjct: 61 PKGGYRLAKAPAEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFATPCNISAAMLR 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + L + SI L Sbjct: 121 AERVYRAELAKTSIADL 137 >gi|326203774|ref|ZP_08193637.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] gi|325986214|gb|EGD47047.1| transcriptional regulator, BadM/Rrf2 family [Clostridium papyrosolvens DSM 2782] Length = 148 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI ++ A N + I+E IS+++L ++ L ++ +V +++ Sbjct: 1 MRISSKGRYGIASMICVAQLGRNGDFVTVISISEKLGISKIYLEQVFSLLKRSKLVSSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L + ++IT D+++A E S F S + + V K + Sbjct: 61 GSQGGYQLTKSPEKITAYDILQAVEISLFEVT-ERSVSRQAEGIEKSITSLVWSKMDKSI 119 Query: 119 FDVLTQYSIECLVRNRS 135 +VL ++ LV Sbjct: 120 SEVLKNVTLTDLVDEAE 136 >gi|157693884|ref|YP_001488346.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682642|gb|ABV63786.1| Rrf2 family transcriptional regulator [Bacillus pumilus SAFR-032] Length = 142 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ IA + + + + +I+ L KAG++ T G+ Sbjct: 1 MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG +L R D+IT+LDV KA E + + + S DCP+ + L +L +A + Sbjct: 61 -GGSQLNRSEDEITLLDVYKAVEVVDEGELFQIHESPNPDCPIGANIQAVLELILCRAQS 119 Query: 117 AFFDVLTQYSIECLVR 132 A VL + + L + Sbjct: 120 AMEQVLAEIKLSELTQ 135 >gi|296272138|ref|YP_003654769.1| BadM/Rrf2 family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096313|gb|ADG92263.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter nitrofigilis DSM 7299] Length = 133 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK+++Y + L+ A +D + +++ I + FL KI+Q L K IV + RG Sbjct: 1 MLLTKKSEYALLSLISIA-KSDKAKNVDELSRELRIPKSFLAKIMQNLAKNEIVISQRGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L +P DQ+TI + A EE V EC S CP C + +L Sbjct: 60 NGGFILAKPYDQLTIFSITAAAEEKIPSVFECAPSMD-SCPSESGSLCSIWPLLNNLQGK 118 Query: 118 FFDVLTQYSIECLVR 132 + L + +++ + + Sbjct: 119 INEFLEELTLKDIAQ 133 >gi|86356200|ref|YP_468092.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280302|gb|ABC89365.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|327192636|gb|EGE59577.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 166 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + I + + + + +AE +S +L K LQ L AGI++TV G Sbjct: 1 MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 RGG +L + A++I++LD++ A E C + P+ C +++ + + Sbjct: 61 PRGGYKLAKAAEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + L + SI L Sbjct: 121 AERVYRAELAKTSIADL 137 >gi|295401043|ref|ZP_06811017.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312112181|ref|YP_003990497.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294976836|gb|EFG52440.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311217282|gb|ADP75886.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 146 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L A+ + IA + + + + +++ L KAG V+ G Sbjct: 1 MKISSRFTVAVHILALLALEKNAHCTSEWIAGSVNTNPVVVRRVIGQLKKAGFVQVRPG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LD+ +A E E + + CP+ + L +L +A Sbjct: 60 TGGAFLTKDTQEITLLDIYRAVEVVEEGELFQIHEHPNPQCPVGANIQAVLEVILHRAQA 119 Query: 117 AFFDVLTQYSIECLV 131 A +VL + + +V Sbjct: 120 AMENVLQEIRLHDIV 134 >gi|213029354|ref|ZP_03343801.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 85 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60 Query: 60 RRGGVRLCRPADQITILDVV 79 GG L + A I + +V+ Sbjct: 61 PGGGYLLGKDAGSIAVGEVI 80 >gi|288961953|ref|YP_003452263.1| transcriptional regulator [Azospirillum sp. B510] gi|288914233|dbj|BAI75719.1| transcriptional regulator [Azospirillum sp. B510] Length = 157 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K TDY I VL A H + ++ +A+ + + K+++ + AG+ + RG Sbjct: 3 RLSKLTDYAIVVLSEMARHVGTVHTVAHLADRTGVPAPTVAKLMKAMTPAGLTTSQRGAA 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L RPA I+I +++ A + + C C + C + K A Sbjct: 63 GGYALSRPAAAISIAEIITALDGPIALTACVDGADSQCGVEQLCPMRGGWEKVNRAIRGA 122 Query: 122 LTQYSIECLVR 132 L + ++ ++ Sbjct: 123 LEEVTLADMMA 133 >gi|149177719|ref|ZP_01856319.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797] gi|148843369|gb|EDL57732.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797] Length = 157 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ +Y +R +++ A P QIA+A + + +L K+LQ L ++ +V + RG G Sbjct: 2 FSQTVEYALRAIVHLADQAPNPCTTEQIAKATKVPQAYLSKVLQSLRQSSVVHSQRGIGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+ L + +++++L+VV A + + C K C L L A+ Sbjct: 62 GISLVKTPEELSLLEVVNAVDPICRIKTCPLGLKG--HGANLCPLHRKLDDAMRETETAF 119 Query: 123 TQYSIECLVRNRSSIKKIFNA 143 + ++ ++ + +S + N Sbjct: 120 AETTLAQILLSSTSSYPLCNE 140 >gi|300813621|ref|ZP_07093949.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512257|gb|EFK39429.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 135 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY R+ + A H + IAE C ++E F +IL+ L AGI RG Sbjct: 1 MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-----VGSCGLTSVLRKAL 115 +GG L RP ++IT+ ++ A E + C A H C V C S L Sbjct: 61 KGGYGLKRPKEEITLYQIICAIEGPTVINRCLA-HDQYCNRKTIEGVKHCKFHSKLFHIQ 119 Query: 116 NAFFDVLTQYSIE 128 + ++ +I+ Sbjct: 120 KSIINMFNSETID 132 >gi|210621787|ref|ZP_03292816.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275] gi|210154551|gb|EEA85557.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275] Length = 148 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T+ +DY IR++ A+ ++ I I E + E F +KI++ L K+ IVE RG Sbjct: 1 MLFTRESDYAIRIVR--ALKDEEKLTIKTICERELLPEAFAYKIIKKLAKSEIVEIKRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + +++T+ DV+ A + F V EC S G C + L N Sbjct: 59 NGGYSLKKDLNELTLYDVIIAVDPDFAVMECIHSFCNRNGSNGMCKVHKELIYIQNQVEM 118 Query: 121 VLTQYSIECLVRNRS 135 +L + S+E ++ +R+ Sbjct: 119 LLKRRSLEEILEDRN 133 >gi|15807906|ref|NP_285565.1| hypothetical protein DR_A0242 [Deinococcus radiodurans R1] gi|6460690|gb|AAF12395.1|AE001863_20 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 149 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ +Y +R + A +++A + +LFK++ LV+AG+V RG+ G Sbjct: 16 FSQTAEYALRATVMLAEQ-GRALSAAELARLSEVPPPYLFKVMGQLVRAGVVTAQRGKNG 74 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RL R A IT+L+VV A + + C C L L + L Sbjct: 75 GYRLGRAAGDITVLEVVNAVDPLPRIRHCPLGKPE--HERALCPLHRQLDETYAQIEATL 132 Query: 123 TQYSIECL 130 S+ + Sbjct: 133 GSRSLAEM 140 >gi|317969579|ref|ZP_07970969.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp. CB0205] Length = 142 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +T YG+ L+ A ++S IA+ I E +L +++ L K G++ + R Sbjct: 1 MPFNAKTRYGLLALIELAGIQAQGGRLQVSVIAQRQGIPERYLEQMMTSLRKGGLLNSSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L RPA I + + ++ E + L S+ + Sbjct: 61 GPKGGYQLARPAADIRLSEALECLEGRSEP------QPPAQQSLEQQVLHSIGTQLQEQR 114 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 +L ++ L+ R ++ + Sbjct: 115 LALLESTTLTDLLAQRDALLQ 135 >gi|194015517|ref|ZP_03054133.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012921|gb|EDW22487.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 142 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ IA + + + + +I+ L KAG++ T G+ Sbjct: 1 MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG +L R D IT+LDV KA E + + + S DCP+ + L +L +A + Sbjct: 61 -GGSQLNRSEDDITLLDVYKAVEVVDEGELFQIHESPNPDCPIGANIQAVLELILCRAQS 119 Query: 117 AFFDVLTQYSIECLVR 132 A VL + + L + Sbjct: 120 AMEQVLAEIKLSELTQ 135 >gi|76666808|emb|CAJ31186.1| Transcriptional regulator [uncultured sulfate-reducing bacterium] Length = 182 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L+ R Y +R+++ A H ++ +SQ++ IS +L +++ L A ++ Sbjct: 22 MKLSTRARYALRLMVTLARHTNGDNSVVSLSQVSREAKISRRYLEQLVIGLKNASLIRGR 81 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G+ GG L PADQI I ++++ + EC +I C C + + Sbjct: 82 SGKGGGYCLALPADQIRIRQIIESAIGPINIVECVMQPEI-CLKSDLCECRMLYQLINQR 140 Query: 118 FFDVLTQYSIECLV 131 VL + L Sbjct: 141 ITGVLDGLVLSDLA 154 >gi|317132533|ref|YP_004091847.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] gi|315470512|gb|ADU27116.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens harbinense YUAN-3] Length = 137 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ +DY +RV+++ I+E I FL K+L+ + A IV + RG Sbjct: 1 MRVTQESDYALRVIIFLYQRGIGERVEARVISEKENIPLRFLLKLLRKMAAANIVRSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117 GG + + +I++ +V++A E +V +C C +C + L+ + Sbjct: 61 SGGGYAIEKQPSEISVREVIEAVEGPIYVNKCLGD-SSQCNLDRTSTCHIHRALQMVQDK 119 Query: 118 FFDVLTQYSIECLVR 132 L + + E +++ Sbjct: 120 LLANLDELTFEQILK 134 >gi|225018166|ref|ZP_03707358.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum DSM 5476] gi|224949163|gb|EEG30372.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum DSM 5476] Length = 132 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T +DY +R++ + A + + IAE ++ F KIL+ LV AG+V++ +G Sbjct: 1 MYITLESDYAVRIMSFLAKRREKLD-AKTIAENTGVTLRFALKILRKLVAAGVVQSFKGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNAF 118 +GG + R +IT+L++++ E + + C C + S+ Sbjct: 60 QGGYLIARDPSEITLLEIIETVEGRYCFSRCLGEDHECGQWCSGERCKVQSIYSNISALV 119 Query: 119 FDVLTQYSIECLV 131 + L + + L+ Sbjct: 120 REQLAGVTFDQLI 132 >gi|258544534|ref|ZP_05704768.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826] gi|258520216|gb|EEV89075.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826] Length = 155 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK ++Y +L + +A+ I+ K+L+ L + GI+E++RG Sbjct: 3 RITKESEYAFLLLGAILSAEGAARNTATLAKEARIAVPMSGKVLKRLTQQGILESIRGAH 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R A+ +T LDVV+A E + EC + + +C L C + ++ + + Sbjct: 63 GGYQLARAAESVTALDVVEAIEGGPELVEC-TNGETNCALAEHCQFSPFWQELNDDIRAM 121 Query: 122 LTQYSIECLVR 132 L ++ + R Sbjct: 122 LAAKTLADMQR 132 >gi|210610732|ref|ZP_03288592.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787] gi|210152296|gb|EEA83303.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787] Length = 158 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR++ Y A + S++A I E ++ KI + L +A I+ G Sbjct: 19 MQLKITTDYAIRIVYYLACRGE-VITASELAYELKIPESYIPKITKKLKEANIITACEGI 77 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 +GG L + + I++ D++ +TE + + C C C + +L + Sbjct: 78 KGGYSLVKKTEDISLFDIISSTEVTMKLNRCLEEDGF-CSRNATEHCKVHKILLDVQQTY 136 Query: 119 FDVLTQYSIECLVR 132 ++L + +++ Sbjct: 137 DNLLKGIKVSEIIK 150 >gi|153815370|ref|ZP_01968038.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756] gi|317500841|ref|ZP_07959053.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089263|ref|ZP_08338165.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847229|gb|EDK24147.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756] gi|316897721|gb|EFV19780.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium 8_1_57FAA] gi|330405815|gb|EGG85344.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium 3_1_46FAA] Length = 136 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 4/138 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR ++Y ++I+ I +L K+L L KA + G Sbjct: 1 MQLNVTTDYAIRTVLYLGQCK-KIASATEISNEMGIPRGYLEKVLSKLKKAEYISADLGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 RGG RL + IT+ DV++ E + + C C C + K Sbjct: 60 RGGYRLNKTLKDITLGDVIRLMESTTKINRCLEDDAY-CSRKAVDFCAVRRYYAKVQEKL 118 Query: 119 FDVLTQYSIECLVRNRSS 136 S++ ++ + Sbjct: 119 ETQFFSISLKEILEQEGA 136 >gi|269793340|ref|YP_003318244.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100975|gb|ACZ19962.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 142 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 1/135 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ T + + + ++A SE L K++Q L +AGI+ + G Sbjct: 6 RFSEATSIALHACLLLSAPGAGRMTSGELASRIGASEAHLSKVVQHLTRAGILRSKSGPG 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GGV L ++ +LDV +A E C K CP G C ++ + + D Sbjct: 66 GGVELAADPSRLKLLDVYEAMEGKSSKGGC-PLGKGLCPFGGRCLFGGLMGRVEDQVLDF 124 Query: 122 LTQYSIECLVRNRSS 136 L + ++ + Sbjct: 125 LARTTLGDFWKGERQ 139 >gi|269215941|ref|ZP_06159795.1| Rrf2 family protein [Slackia exigua ATCC 700122] gi|269130200|gb|EEZ61278.1| Rrf2 family protein [Slackia exigua ATCC 700122] Length = 138 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +RTDY R ++ A ND ++++AE I F I LV AG++ RG Sbjct: 1 MDLNRRTDYACR-MIRAAYKNDGKVISVTKVAEQEGIPYAFARSIQNDLVHAGLLRAERG 59 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG+ L T+L V++ + + C + C C +V + A + Sbjct: 60 ARGGLALACDPSTTTLLHVLECVQGPISMTACTNDERF-CDRRDGCEFHAVWKHAESMLK 118 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +++ L R+ + ++ Sbjct: 119 AYYASITLDDLFRHGRNPRR 138 >gi|218672764|ref|ZP_03522433.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 166 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + I + + + + +AE +S +L K LQ L AGI++TV G Sbjct: 1 MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 RGG RL +P ++I++LD++ A E C + P+ C +++ + + Sbjct: 61 PRGGYRLAKPPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCTISAAMLR 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + L + SI L Sbjct: 121 AERIYRAELAKTSIADL 137 >gi|291278641|ref|YP_003495476.1| BadM/Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753343|dbj|BAI79720.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter desulfuricans SSM1] Length = 139 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T ++ Y I + A++ D + IA+ I + FL L L GIV + +G Sbjct: 1 MNVTSKSIYAIIAVYELALNKDKFIKSDVIAKKYNIPKRFLEITLSELKTNGIVISKKGG 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + ++I+I D++ TE V C + +C +V Sbjct: 61 GGGFALKKLPEEISIFDIITITENDLKVFNCSKFLEK-----STCNTFTVFENLNTEIIS 115 Query: 121 VLTQYSIECLVRNRS 135 +L +I+ ++ + Sbjct: 116 LLKNKTIQDIINENT 130 >gi|290962918|ref|YP_003494100.1| hypothetical protein SCAB_86361 [Streptomyces scabiei 87.22] gi|260652444|emb|CBG75577.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 133 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%) Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +M A+ + QIA++ + + K + L G++E RGR GG+ L Sbjct: 1 MMRLAVVDGAELLTTRQIADSMNVPYTHMAKAIAQLQHLGVIEARRGRNGGLTLTDAGRA 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + ++V+ E+ C CPL G+C L LR+A AF+ L + ++ LV Sbjct: 61 APVGNLVRTLEQDREAVVC--EGDTPCPLSGACRLRRALREAQEAFYSSLDKVTVGDLVA 118 Query: 133 NRSS 136 + + Sbjct: 119 SPTG 122 >gi|94985327|ref|YP_604691.1| BadM/Rrf2 family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555608|gb|ABF45522.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus geothermalis DSM 11300] Length = 148 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ RT + +L + D + +A + + + + ++ L AG+VET RG+ Sbjct: 10 KLSTRTAMAVHILTLVGANPDVAHSSEWLAGSLGVHPVMVRQVTSRLRAAGLVETRRGKA 69 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119 G +RL RPA +T+LDV +A E+ + A CP+ L V +A AF Sbjct: 70 G-LRLTRPASAMTLLDVYRAVEDGDALLALHARPNPSCPVGSGIQAVLEDVFEEARTAFE 128 Query: 120 DVLTQYSIECLVRN 133 L ++ ++ Sbjct: 129 RSLAARTVADVMAR 142 >gi|260061024|ref|YP_003194104.1| hypothetical protein RB2501_05485 [Robiginitalea biformata HTCC2501] gi|88785156|gb|EAR16325.1| hypothetical protein RB2501_05485 [Robiginitalea biformata HTCC2501] Length = 143 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K Y I+ ++Y +H+ P +I + E +SE +L KILQ L + I+ +++GR Sbjct: 2 ISKTAKYAIKAVIYLGLHSSEPKKILTRDMYEQIHVSESYLAKILQVLSRHNIISSIKGR 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L T++D+V+ + +V C +C C L ++ K F Sbjct: 62 NGGFYLSEENKNHTLMDIVRVVDGGQYVESCVLGIS-NCNSENPCALHDLVGKGKTEFNR 120 Query: 121 VLTQYSIECLVRN 133 VL + +I+ L+ + Sbjct: 121 VLEEVTIKKLIAS 133 >gi|310826117|ref|YP_003958474.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308737851|gb|ADO35511.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 148 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ ++ A + + IAE +S+++L ++ L +AG+V +V+ Sbjct: 1 MRISAKGRYGLAAMIAIAQGDFEGDYVPVIVIAEKLGLSKIYLEQVFSLLKRAGLVNSVK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----- 113 G +GG RL R DQI +++ A E + + S + ++K Sbjct: 61 GAQGGYRLTREPDQINAHEILTALE------QILFENTETSVEEASPAIEHTMQKCVFTP 114 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A + L + +++ LV Sbjct: 115 LDRAVQEHLEKITLDELVAE 134 >gi|78776353|ref|YP_392668.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78496893|gb|ABB43433.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas denitrificans DSM 1251] Length = 134 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + YG+ + + + P +I +IA + + +L ++L L +AG+VE++RG + Sbjct: 4 ISTKGSYGLAAICELSKRKENSPMQIKEIALNANVPQNYLEQLLGKLRRAGLVESIRGAK 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 GG L RP I ILD++ A E+ + + H I Sbjct: 64 GGYILARPPQDIKILDILMALEDDLKIVDTLVEHPI 99 >gi|186685046|ref|YP_001868242.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467498|gb|ACC83299.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 145 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +I +IA I +L ++L L + G+++++RG +GG L R +IT+LD Sbjct: 23 KGEALQIREIAVLQDIPNRYLEQLLATLRRGGLIKSIRGAKGGYVLARDPGKITVLDAFS 82 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 E S V S + G + V ++A A VL +Y+++ L RS K+ Sbjct: 83 CMEGSDIVVS--DSEPTPNTVEGE-LIQEVWQEARQAANSVLEKYTLQDLCERRSLRKQ 138 >gi|326799915|ref|YP_004317734.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sphingobacterium sp. 21] gi|326550679|gb|ADZ79064.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp. 21] Length = 145 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 7/143 (4%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R + Y A H I +IA+A E FL KILQ L K G++++V+G Sbjct: 4 FSKTAEYAMRAVFYIAQRSHEGQRTGIKEIADAVNSPEAFLAKILQKLSKVGLIQSVKGP 63 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + D+V A E C C C L +K N Sbjct: 64 NGGFYIDTSGFSRPLADIVIAVEGDTIFKGCGMGLSY-CSEEYPCPLHGEFKKVRNQITL 122 Query: 121 VLTQYSI----ECLVRNRSSIKK 139 +L +I L++ + ++ K Sbjct: 123 MLRNTTIGQFNAELIKGQLTLNK 145 >gi|241202984|ref|YP_002974080.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856874|gb|ACS54541.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 166 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + I + + + + +AE +S +L K LQ L AGI++TV G Sbjct: 1 MKIGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113 +GG RL + +I++LD+V A E S C + D C + + + K Sbjct: 61 PKGGYRLAKAPKEISLLDIVLAVEGSAPAFRCAEIRQRGPNPVSDRLFAQPCTINAAMLK 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + L + S+ + Sbjct: 121 AERVYRAELAKTSLADI 137 >gi|73662780|ref|YP_301561.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495295|dbj|BAE18616.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 127 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +K T+Y + L++ +N + +A+A IS +L KIL LVK G++ Sbjct: 1 MKYSKATNYALHALLFMIKNNGDVQRIPVQDLAKALGISTTYLSKILTRLVKVGVISASS 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L +TI +V+ + + E +H CP + ++ +A A Sbjct: 61 GAKGGYQLSLNWQDVTIYEVITTIDGKQSLFEDSFNHGDSCP------INKLMIEAEQAL 114 Query: 119 FDVLTQYSIECLV 131 L Q ++ L+ Sbjct: 115 IGSLKQKKLKDLI 127 >gi|83646262|ref|YP_434697.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634305|gb|ABC30272.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 156 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L A+H R IA + + + ++L L +AG+ + G Sbjct: 1 MPTSTRFAVAIHILADLALHKGKAVRSEDIACSVNTNAAVVRRLLGVLAEAGMTRSQLGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116 GG L RPAD IT+LDV +A EE + + C + C +TSVL ++ Sbjct: 61 GGGALLARPADAITLLDVYQAVEEPNYFVLHRSKPNPKCYIG--CNITSVLEDEFQRISA 118 Query: 117 AFFDVLTQYSIECLVRN 133 L Q +I + R Sbjct: 119 TMDASLAQTTIADVARQ 135 >gi|320533390|ref|ZP_08034080.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320134407|gb|EFW26665.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 165 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K ++ L+ + + +A +S +L K LQ L AGIV +V G Sbjct: 1 MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG RL +PA ++++ DVV A + + +C F K G C + + Sbjct: 61 SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFIDQKSQILASGLCSINRAMS 120 Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFNA 143 +A +A+ L SI L + ++ ++ A Sbjct: 121 RAEDAWRASLAGTSIADLAAGLDNATRTRMLQA 153 >gi|271963708|ref|YP_003337904.1| hypothetical protein Sros_2178 [Streptosporangium roseum DSM 43021] gi|270506883|gb|ACZ85161.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 149 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R DY +R A + P + ++A+ + +L IL + +AG+V RG Sbjct: 1 MRLSARVDYALRAAAELAAAGEGPTTVGELAKEQDMPPKYLENILLQMRRAGLVRGQRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RPA +IT+ DV++A + +D + L V + Sbjct: 61 EGGYVLARPAAEITLADVIRAVDGPLANVRGERPEHVDY-RGPAESLQQVWIALRASERA 119 Query: 121 VLTQYSIECLV 131 +L + +++ + Sbjct: 120 ILEEVTLDSVA 130 >gi|253990072|ref|YP_003041428.1| hypothetical protein PAU_02593 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781522|emb|CAQ84685.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 155 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 12/140 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L A+H+ R IA + + + ++L L AG+ + G+ Sbjct: 1 MPTSTRFAVAIHILTDIALHHGQAVRSEDIARSVNTNPTVVRRLLGALADAGLTYSQMGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L RP +QI++LD+ +A E+ + + C + + +T VL N F Sbjct: 61 GGGALLARPPEQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHN--ITPVL---ENEFLR 115 Query: 121 V-------LTQYSIECLVRN 133 + L + +I + Sbjct: 116 ITCVLETALAETTIADMANR 135 >gi|313205087|ref|YP_004043744.1| transcriptional regulator, badm/rrf2 family [Paludibacter propionicigenes WB4] gi|312444403|gb|ADQ80759.1| transcriptional regulator, BadM/Rrf2 family [Paludibacter propionicigenes WB4] Length = 147 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + YG+R ++ A D + IA+ IS +L I+ L G++ +G Sbjct: 1 MRINTKIRYGLRTMIEIASSTDANGMLQKDIAKNQNISLKYLDPIISSLKLKGLIVNSKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R G RL R IT+LD+ A E V EC + + C + + N F Sbjct: 61 RGSGYRLTREPKDITMLDIYTAFE-QIIVIECINNLGYCDRSMHDCKGRNYWNEFKNEFA 119 Query: 120 DVLTQYSIECLVRN 133 ++L ++E ++ Sbjct: 120 EMLRSKNLEQIIEE 133 >gi|256389825|ref|YP_003111389.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256356051|gb|ACU69548.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 155 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 11/142 (7%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L T++ + A + +Q+A + +L K LQ L +AGI+ G Sbjct: 1 MKLPTSTEWVLHCAATLAQLRPAETASAAQLAAYYDLPAPYLAKQLQALTRAGILSATTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 RGG RL R A IT+L +V+A + + EC +C +C L + Sbjct: 61 PRGGFRLARAAKDITMLQIVEAVDGAAAPYECREIRQQGRGGLTPDECQ--ETCPLARTM 118 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 +A A+ LT S+ ++ Sbjct: 119 AEAHTAWRASLTAVSLADILAE 140 >gi|144898449|emb|CAM75313.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 151 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +K+ + I ++ A H P + +I I +L + LQ LV++G++ VRG +G Sbjct: 5 SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRSGLLVGVRGPKG 64 Query: 63 GVRLCRPADQITILD---VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 G RL R +I++ + VV+A E + + + +G+ + + Sbjct: 65 GYRLARERRRISVGEVVRVVRAMETAEDPFQ-----DVPASDLGAKVIRPMWGDLTEEIM 119 Query: 120 DVLTQYSIECLV 131 D L + + L Sbjct: 120 DRLDAITFDDLC 131 >gi|282882582|ref|ZP_06291201.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281297557|gb|EFA90034.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 135 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY R+ + A H + IAE C ++E F +IL+ L AGI RG Sbjct: 1 MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-----SCGLTSVLRKAL 115 +GG L RP ++IT+ ++ A + + C C C L Sbjct: 61 KGGYGLKRPKEEITLYQIICAIDGPTVINRCLGYDHY-CNRKAENGVKHCKFHKKLFHIQ 119 Query: 116 NAFFDVLTQYSIE 128 ++ +I+ Sbjct: 120 KTIINMFDSETID 132 >gi|87302927|ref|ZP_01085731.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701] gi|87282423|gb|EAQ74382.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701] Length = 144 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + +T+YG+ L+ A + +IA I E +L ++L L ++G+V ++R Sbjct: 1 MSFSTKTEYGLVALIELAEVYSGGGVLQAGEIARRQGIPERYLEQMLTSLRRSGLVHSLR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG +L R + IT+ +V+ E C + + LT++ +K A Sbjct: 61 GPRGGYQLARSPELITVAEVLACLEGK-AGGACPDGKRSTTAFL---VLTALEQKLEQAR 116 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 VL +++ L+ + + + Sbjct: 117 ARVLAALTLKQLLEDTRARNQ 137 >gi|229013707|ref|ZP_04170836.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048] gi|229062189|ref|ZP_04199513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] gi|229135339|ref|ZP_04264130.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196] gi|229169232|ref|ZP_04296946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621] gi|228614298|gb|EEK71409.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621] gi|228648114|gb|EEL04158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196] gi|228717172|gb|EEL68848.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] gi|228747629|gb|EEL97503.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048] Length = 151 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R D+IT+LDV KA E E + + I+CP+ + L +L ++ Sbjct: 69 -GGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILIQSQE 127 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A +VL +++ LV N +S IK+ Sbjct: 128 AMENVLANVTVQQLVTNLKSKIKE 151 >gi|146328986|ref|YP_001209737.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A] gi|146232456|gb|ABQ13434.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A] Length = 141 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +TK ++Y + + + + + +A+ I+ K+L+ L+K IV++VRG Sbjct: 3 RITKESEYAFLL-LSVLLSEESAQSAAVLAKKTGIAAPMASKVLKRLLKGDIVQSVRGAY 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG RL + A+ IT L+VV E + EC +K +C L +C ++ ++ A + Sbjct: 62 GGYRLAKAAETITALEVVAVIEGMPELVECVDQNK-NCDLSSNCPISPFWQQMNQAIETM 120 Query: 122 LTQYSIECLVRNRS 135 L ++ + R+ + Sbjct: 121 LAAKTLADMQRDEN 134 >gi|319442413|ref|ZP_07991569.1| Rrf2 family transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 159 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%) Query: 1 MHLTKRTDYGIRVLMYC-------AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 MHLTK D G+R LM A + ++A + K++ L G+ Sbjct: 1 MHLTKFADLGLRSLMILGDTGAAGATDPSQRRTVGELAVQTAAPASHVKKVVARLTGLGV 60 Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLR 112 + +VRGR GGV L A I +++ E V +C + CPL C L +L Sbjct: 61 LASVRGRSGGVYLADGARDTDIGRLLRELEGRHEVVDC--EGEAPCPLAARDCSLRHLLA 118 Query: 113 KALNAFFDVLTQYSIECLVRN 133 +A FF ++ L+ Sbjct: 119 QAQENFFATFDGMTLGELIER 139 >gi|302551156|ref|ZP_07303498.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces viridochromogenes DSM 40736] gi|302468774|gb|EFL31867.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces viridochromogenes DSM 40736] Length = 152 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A + P + +A A I FL IL L + G+V++ RG Sbjct: 1 MRISARADYAVRAVVELAARQGEGPVKAEAVATAQDIPHKFLEGILGDLRRGGVVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A +IT+ DV++A + + L + Sbjct: 61 GGGGYRLAREATEITVADVIRAVDGPIVSVRGERPTGLAYTGTAE-PLLPLWIALRANVR 119 Query: 120 DVLTQYSIECLVR 132 +L ++ L Sbjct: 120 RILEGVTVADLAA 132 >gi|260588850|ref|ZP_05854763.1| sensory box protein [Blautia hansenii DSM 20583] gi|260540629|gb|EEX21198.1| sensory box protein [Blautia hansenii DSM 20583] Length = 488 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR++ + A + + P + IA + I ++ KI++ L A IV +V G Sbjct: 1 MQLTSTTDYSIRLVCFLA-YKEEPCSTATIATSANIPNNYIPKIIKKLKIANIVGSVEGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-------CPLVGSCGLTSVLRK 113 +GG L + + IT+ D++ E + + +C + C +C + +V + Sbjct: 60 QGGYFLLKKPETITLWDILDTMESTMKINKCLEEKQEGECCVPNYCHNRETCKVRAVFEQ 119 Query: 114 ALNAFFDVLTQYSIECLV 131 L + +I L+ Sbjct: 120 FQMDLERKLEEVTIAELI 137 >gi|222084808|ref|YP_002543337.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722256|gb|ACM25412.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 166 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + I + A + + IAE +S +L K LQ L AGI++TV G Sbjct: 1 MKLGEGVEQAIHSVAVLAGLSEGSVLSAAAIAEFHGVSVSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCP---LVGSCGLTSVLRK 113 +GG RL R I++LD+V A E C P CG+++ + Sbjct: 61 PKGGYRLARLPKDISLLDIVLAVEGPAPAFRCAEIRQRGPNSLPGKYFTKPCGISAAMLA 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A + L + +I ++ + Sbjct: 121 AERVYRAELAKTAIADILAD 140 >gi|158313027|ref|YP_001505535.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EAN1pec] gi|158108432|gb|ABW10629.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EAN1pec] Length = 151 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A + + +A A + FL IL L ++G+V++ RG Sbjct: 1 MQISARADYALRALLTLAASDGSLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +LCRPA++ITI V++AT+ L V Sbjct: 61 DGGYQLCRPAEEITIATVIRATDGPLASVRGRPPENAQYEGAAK-HLQDVWIAVRVNLRR 119 Query: 121 VLTQYSIECLVRNR 134 VL ++ + + Sbjct: 120 VLESVTLADVASGK 133 >gi|226197420|ref|ZP_03792997.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] gi|225930799|gb|EEH26809.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] Length = 142 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 + I +I++A IS+ L K++Q L + G +ETVRGR GG+RL + +T+ +VV+ TE Sbjct: 2 STIQEISDAYGISKNHLMKVVQQLGELGWIETVRGRNGGLRLNAQSVTLTVGEVVRKTEN 61 Query: 85 SFFVAECFASHKI---DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 F + CFA C + +C L V A AFF L +++I L + S + + Sbjct: 62 DFALVGCFAGESESHRSCVIQSACRLRGVFAAAREAFFAELDKHTIGELAQPASQLATLL 121 Query: 142 N 142 Sbjct: 122 G 122 >gi|313633680|gb|EFS00431.1| Rrf2 family protein [Listeria seeligeri FSL N1-067] Length = 143 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +I+ L KAG++ + G Sbjct: 3 MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGV 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118 G L + A +IT+ D+ A + + + + + +C + + +T +V A Sbjct: 63 SGTYLL-KEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQVTLDTVFNHAQQQM 121 Query: 119 FDVLTQYSIECLVRN 133 L Q ++ + N Sbjct: 122 EADLKQTNLSQITAN 136 >gi|309774620|ref|ZP_07669645.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917651|gb|EFP63366.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 134 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL TDY +R+++Y A + +++E I + ++ K+ L +A I+E V G Sbjct: 1 MHLKISTDYAVRIVLYLAKKR-QLVQSKELSEQLHIPQGYVLKVASILKEAQILEAVTGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFF 119 GG RL + I I DV++A E + + C + GS C + K + Sbjct: 60 DGGFRLVKHPRDIPIYDVIRAMETTMQINRCLEKDRYCSRDAGSFCQVRHFYEKIQSYLD 119 Query: 120 DVLTQYSIECLVR 132 +L SI+ L+ Sbjct: 120 HMLLSTSIQELLE 132 >gi|237736975|ref|ZP_04567456.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229420837|gb|EEO35884.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 143 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + +Y IR+L+Y + + ++I++A I LF +IL+ L KA +V+ +G Sbjct: 1 MRIKNEIEYVIRILLYLTKYGENRIVSSNEISDAEDIPHLFSLRILKKLEKASLVKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG +L +P+++IT+ D V+ E + +C + G C + F Sbjct: 61 ARGGYQLTKPSEEITLRDAVETIEPVICIKDCVNDPESCSLRKGECAVHRAFNGIQREFI 120 Query: 120 DVLTQYSIECLVRN 133 L + + L Sbjct: 121 KALESRNFKELAEE 134 >gi|289548069|ref|YP_003473057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Thermocrinis albus DSM 14484] gi|289181686|gb|ADC88930.1| transcriptional regulator, BadM/Rrf2 family [Thermocrinis albus DSM 14484] Length = 143 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D + ++++ I FL KI LV+ I+++ +G GG P ++ITILDV+ Sbjct: 20 NRDRLVKSEEVSQVQNIPRPFLSKIFHKLVRERILKSYKGPTGGFTFAIPPEEITILDVI 79 Query: 80 KATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 KA +E + + C A C C + + LT +I L Sbjct: 80 KALDEDYKLDYC-ALRPGRCEEWQTSPCNVHDKWVALREHVLEYLTTTTIAELAGVEDKH 138 Query: 138 KK 139 +K Sbjct: 139 RK 140 >gi|163792642|ref|ZP_02186619.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] gi|159182347|gb|EDP66856.1| transcriptional regulator, BadM/Rrf2 family protein [alpha proteobacterium BAL199] Length = 180 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 7 TDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +Y + L+ A+ +A+ + F+ K+L L KAG+V G RGG R Sbjct: 8 VEYALHTLLNLALAPPGTAPSARDLADFQRLPVPFIQKLLTQLEKAGLVTGAEGIRGGWR 67 Query: 66 LCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTSVLRKAL 115 + R A+ IT+LDV A + + +C + + G C + +V+ A Sbjct: 68 MARAANAITVLDVADAAKGDDALFKCRNIRARCALWDDASPPQAAVSGVCSIHAVMLSAE 127 Query: 116 NAFFDVLTQYSIECLVRN 133 A L +++ +V Sbjct: 128 AAMRQELAAHTLADIVDR 145 >gi|226357841|ref|YP_002787581.1| transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115] gi|226320084|gb|ACO48077.1| putative transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115] Length = 138 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L +++ +IA + ++ + + ++ L KAG+++T +G G RL RP Sbjct: 8 AVHILTLISLYPHNARTSDEIAASVGVNPVVVRNVMSLLRKAGLLDTRQGSPG-ARLIRP 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSI 127 + IT+LDV A V + CP+ G+ LT+VL A A D L ++ Sbjct: 67 PEAITLLDVYHAVNAPELVFKLHDQPHPQCPVGGNIQAALTTVLGNAQQAMEDHLATVTL 126 Query: 128 ECLVRN 133 ++ + Sbjct: 127 ADIMAD 132 >gi|328541946|ref|YP_004302055.1| HTH-type transcriptional regulator NsrR [polymorphum gilvum SL003B-26A1] gi|326411696|gb|ADZ68759.1| HTH-type transcriptional regulator NsrR [Polymorphum gilvum SL003B-26A1] Length = 132 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 I IA+ C + ++Q L K G +++V+GR GG+ L R +I++ ++V E Sbjct: 1 MSIDTIADRCRTGRPQVVHVVQILRKHGYIKSVQGRNGGIWLDRNPAEISLAEIVHLFES 60 Query: 85 SFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 + ECF + C L +CG L +AL AF L +I L +++ Sbjct: 61 DLNLVECFEPKRTCRCTLQAACGFRRTLDRALQAFLAELEATTIADLAGETAAL 114 >gi|116250351|ref|YP_766189.1| Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254999|emb|CAK06073.1| putative Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 166 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + I + + + + +AE +S +L K LQ L AGI++TV G Sbjct: 1 MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113 +GG RL + +I++LD+V A E S C + D C + + + K Sbjct: 61 PKGGYRLAKAPKEISLLDIVLAVEGSAPAFRCAEIRQRGPNPVSDRLFAQPCTINAAMLK 120 Query: 114 ALNAFFDVLTQYSIECL 130 A + L + S+ + Sbjct: 121 AERVYRAELAKTSLADI 137 >gi|325102879|ref|YP_004272533.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324971727|gb|ADY50711.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 145 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 15/147 (10%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R + + A D I +IA+ E FL KILQ L + GIV + +G Sbjct: 4 FSKTCEYAMRAVFFIAYKTSEDKKVGIKEIAQGINSPEHFLAKILQDLSRKGIVLSAKGP 63 Query: 61 RGGVRLCRPADQITILD----VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + D IT+ +V+A + C C C + +K N Sbjct: 64 NGGFYM----DSITLKQPLSNIVEAIDGDKIFVGCGLGLNY-CSESNPCPIHHEFKKIRN 118 Query: 117 AFFDVLTQYSI----ECLVRNRSSIKK 139 +L +I E L+ S++KK Sbjct: 119 DIIKMLKNTTIEDFNEDLILGNSTLKK 145 >gi|163942239|ref|YP_001647123.1| BadM/Rrf2 family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864436|gb|ABY45495.1| transcriptional regulator, BadM/Rrf2 family [Bacillus weihenstephanensis KBAB4] Length = 143 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R D+IT+LDV KA E E + + I+CP+ + L +L ++ Sbjct: 61 -GGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILIQSQE 119 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A +VL +++ LV N +S IK+ Sbjct: 120 AMENVLANVTVQQLVTNLKSKIKE 143 >gi|229167407|ref|ZP_04295145.1| Transcriptional regulator [Bacillus cereus AH621] gi|228615969|gb|EEK73056.1| Transcriptional regulator [Bacillus cereus AH621] Length = 120 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 9/122 (7%) Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +++ A + + Q+AE +S +L KIL L K G++ + G +GG L + Sbjct: 1 MLFLAEATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSSNWED 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 I+ LD++ A E + EC C C + V+ A + L I L Sbjct: 61 ISFLDIIHAIEGKTSLFEC-------CLHQEPGCLINEVMLAAEEKMEEELRNQKIVDLA 113 Query: 132 RN 133 + Sbjct: 114 KK 115 >gi|289643651|ref|ZP_06475764.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of Datisca glomerata] gi|289506542|gb|EFD27528.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of Datisca glomerata] Length = 151 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A N + +A A + FL IL L ++G+V + RG Sbjct: 1 MQISARADYALRALLTLAASNGDLVKGETLATAQDLPLRFLENILTDLRRSGLVRSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RLCRPA++IT+ V++AT+ + L V + Sbjct: 61 DGGYRLCRPANEITVAMVIRATDGPLASVRGRRPEEAVYEGAAK-HLQEVWIAVRVSIRR 119 Query: 121 VLTQYSIECLV 131 VL + ++ + Sbjct: 120 VLEEVTLADIA 130 >gi|152976907|ref|YP_001376424.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025659|gb|ABS23429.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus NVH 391-98] Length = 143 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+ Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L R D+IT+LDV KA E E + + ++CP+ + L +L +A Sbjct: 61 -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNVECPVGANIQSVLEIILIQAQE 119 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A VL +++ LV + +S I+K Sbjct: 120 AMEHVLANVTVQQLVTSLQSKIQK 143 >gi|256389588|ref|YP_003111152.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Catenulispora acidiphila DSM 44928] gi|256355814|gb|ACU69311.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora acidiphila DSM 44928] Length = 151 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 1/111 (0%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H D +AEA + + K++ L G+V+ RGR GG+ L ++ VV Sbjct: 25 HPDELPTTRGVAEAMGAASTHMAKVVGKLQHLGLVQARRGRGGGLVLTPAGRVASVGAVV 84 Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 + E S +A C CPL +C L S LR A AF+ L Q ++E + Sbjct: 85 RTFEGSGDLAACVDGEDP-CPLNAACRLRSALRAAQEAFYASLDQLTVEDV 134 >gi|56752461|ref|YP_173162.1| hypothetical protein syc2452_d [Synechococcus elongatus PCC 6301] gi|81300274|ref|YP_400482.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687420|dbj|BAD80642.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169155|gb|ABB57495.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus elongatus PCC 7942] Length = 151 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + +Y + L+ A N P +I Q+A+ I + +L ++L L + GIV +VRG Sbjct: 8 LSGKCEYALLALIELARGHSNGEPQQIKQLADRQNIPDRYLEQLLATLRRGGIVRSVRGA 67 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L R QI++ DVV + E + L + + A Sbjct: 68 RGGYLLAREPWQISMQDVVHCIDGTEMQRTEAIDQQSVTIERQ---ILVDINVELCKAVE 124 Query: 120 DVLTQYSIECLVRNRSS 136 DVL YS++ L+ R + Sbjct: 125 DVLAAYSLQDLLEIREN 141 >gi|237733505|ref|ZP_04563986.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383338|gb|EEO33429.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 134 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL TDY +R+++Y + ++++ I + ++FKIL+ L ++ +V + G Sbjct: 1 MHLKMSTDYAVRIIIYLSEKQCR-VSSKELSKKLVIPQNYIFKILKILQESNLVNSYSGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 GG L + IT+ D+++ATE + + C + + C +C K Sbjct: 60 DGGFILKKEPKDITMFDIMQATETTTRINRCLENDEY-CSRHATTNCKARCFYIKMQMYM 118 Query: 119 FDVLTQYSIECLVR 132 D + +I+ L+ Sbjct: 119 DDTFKRMTIQDLLE 132 >gi|225412244|ref|ZP_03761433.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme DSM 15981] gi|225042209|gb|EEG52455.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DYG+R++ A+ + I QI E CI + F +KIL+ L AG+V+ RG Sbjct: 24 MMITRESDYGVRIIR--ALKDGGLMTIGQICERECIPKQFAYKILKKLELAGLVQIKRGF 81 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 GG L R +T+ DV++AT+E FF+ C + DC C + L + Sbjct: 82 GGGCALARDLADMTLYDVIRATDEEFFLTHCLQAD-FDCEYLAKSPCTIHRELARVQGIL 140 Query: 119 FDVLTQYSIECLV 131 L S+ L+ Sbjct: 141 EQELRARSMAELL 153 >gi|297191372|ref|ZP_06908770.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720618|gb|EDY64526.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 160 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ ++ + + + P +++AE +S +L K LQ L +AG+V +V+G+ Sbjct: 1 MKMSGGVEWALHCCVVL-TSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG L R IT+LDVV+A + C A+ C C + + Sbjct: 60 AGGYVLTREPASITVLDVVEAVDGPGQAFTCTEIRQRGPLATPAESC--TAPCAIARAMA 117 Query: 113 KALNAFFDVLTQYSIECLVR 132 A A+ L SI LV+ Sbjct: 118 GADAAWRAALRAVSIADLVQ 137 >gi|297199432|ref|ZP_06916829.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sviceus ATCC 29083] gi|197713030|gb|EDY57064.1| iron-sulfur cluster assembly transcription factor IscR [Streptomyces sviceus ATCC 29083] Length = 152 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 2/134 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R ++ A+ P + IA I FL IL L + GIV++ RG Sbjct: 1 MRISARADYAVRAVLELAVRQGTEPVKAEAIAAVQDIPHKFLEGILGDLRRGGIVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL R A +T+ DV++A + ++ L + Sbjct: 61 GGGGYRLAREASAVTVADVIRAVDGPIVSVRGERPTGLEYTGSAQ-PLLPLWIALRANVR 119 Query: 120 DVLTQYSIECLVRN 133 +L +I + + Sbjct: 120 KILEGVTIADIAGD 133 >gi|306820775|ref|ZP_07454400.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551165|gb|EFM39131.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 131 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L Y + + S ++E I F KIL+ L GI + RG Sbjct: 1 MRITQETDYALRILDYLSATDKEIVGASVLSEDLNIPVRFALKILRKLNLYGITKANRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117 GG L + I VV+A E ++ +C C +C + LR Sbjct: 61 SGGYFLLMKPEDINYKMVVEAIEGEIYINKCLQDRSC-CNRRMKKDTCIINKNLRSIQEV 119 Query: 118 FFDVLTQY 125 L +Y Sbjct: 120 LNKELEKY 127 >gi|229085778|ref|ZP_04218006.1| Transcriptional regulator [Bacillus cereus Rock3-44] gi|228697577|gb|EEL50334.1| Transcriptional regulator [Bacillus cereus Rock3-44] Length = 131 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 14 LMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++Y + + + Q+A+ +S +L KIL LVKAG++E+ G GG + R + Sbjct: 1 MVYLTLTPKGKSTGVEQLAKIQNLSPTYLSKILTKLVKAGLIESNPGVNGGYSIVRRSHN 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 I+ LDV+ A E + C H+ C + +V+ A N D L + I + + Sbjct: 61 ISFLDVIHAIEGQTTLFSCSLEHEKL-FRNDDCLIENVMIDAENKMKDELNKKYIIDIAK 119 Query: 133 NRSSIKK 139 S KK Sbjct: 120 QIQSKKK 126 >gi|160935060|ref|ZP_02082446.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753] gi|156866513|gb|EDO59885.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753] Length = 134 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+T DY +R++ + A IAE + F KIL+ LV I+ + +G Sbjct: 1 MHMTLEADYAVRIVEFLAEQ-GCKTDAHTIAEQTRVPLRFALKILRTLVSQDIIVSYKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG +L PA++IT+ V++A E + + C + C +C V + + Sbjct: 60 KGGYQLAHPAEEITLRQVIEAVEGPYVLNRC-QHDEYTCGHT-ACRFHHVYNEISQLVRE 117 Query: 121 VLTQY 125 L Sbjct: 118 KLESV 122 >gi|157738370|ref|YP_001491054.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri RM4018] gi|315636657|ref|ZP_07891890.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] gi|157700224|gb|ABV68384.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri RM4018] gi|315479083|gb|EFU69783.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri JV22] Length = 137 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + YG+ + + H D P +I I+ I + +L ++L L KA +V ++RG R Sbjct: 4 ISTKGVYGLSAMYELSKHKADTPMQIKDISANANIPQNYLEQLLSKLRKANLVNSIRGAR 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAE 90 GG L + D+I I+D++ A E+ + + Sbjct: 64 GGYILAKKPDEIKIVDILIALEDDIKIID 92 >gi|186685463|ref|YP_001868659.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467915|gb|ACC83716.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC 73102] Length = 156 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + +Y + L+ A H+ P +S+I I E +L +IL L +AG+V++ RG Sbjct: 16 LSSKVEYALLALLELASHHGKKLPLTMSEITTKQPIPERYLEQILTNLRRAGVVQSQRGS 75 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L R QIT+L++V E + P + + V +A A + Sbjct: 76 KGGFVLAREPWQITLLEIVTLVEGERK-----EKDTSNSPTLEKTLVYEVWEQANAAAIE 130 Query: 121 VLTQYSIECLVRNRSSIKK 139 VL +Y+++ L R + + Sbjct: 131 VLGRYTLQDLCEERETRAQ 149 >gi|87307172|ref|ZP_01089317.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM 3645] gi|87289912|gb|EAQ81801.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM 3645] Length = 153 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ +Y +R + + A +IA + +L K+LQ L KAG+V + RG G Sbjct: 2 FSQTVEYALRAVCHLAFIAPNSCTTEEIATGTKVPLAYLSKVLQGLAKAGVVRSQRGIGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+ L + D++TIL+VV A + + C + V C L L AL + Sbjct: 62 GMSLIKRPDELTILEVVNAVDPIQRIRTC--PLGLSTHGVKLCPLHRRLDNALKGVEEAF 119 Query: 123 TQYSIECLVRNRSS 136 ++ ++ S Sbjct: 120 GGTTLAEVIAEPSE 133 >gi|291303191|ref|YP_003514469.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572411|gb|ADD45376.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia nassauensis DSM 44728] Length = 160 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 11/141 (7%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L T++ + A + + +Q+AE + +L K LQ LVKAGI+ G Sbjct: 5 KLPTSTEWLLHSATTLAQLEPGHSASAAQLAEYYDLPPAYLAKQLQVLVKAGILAATTGA 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 RGG RL +PA ++T+L +V+A + + EC A + DC +C L + + Sbjct: 65 RGGFRLAKPAAEVTLLAIVEAVDGTASPYECREIRQQGRGALPEKDCRR--TCVLAARMY 122 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A +A+ L ++ ++ + Sbjct: 123 DAHDAWRRSLAGVTLADILDS 143 >gi|323485653|ref|ZP_08090991.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum WAL-14163] gi|323691728|ref|ZP_08105988.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum WAL-14673] gi|323401003|gb|EGA93363.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum WAL-14163] gi|323504206|gb|EGB20008.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum WAL-14673] Length = 138 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L + + ++AE + + F +KIL+ L KAGIV+ RG Sbjct: 1 MLITRETDYALRILRTLS--DGKSYTAGELAERESLPQKFAYKILKKLEKAGIVQITRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG RL T+ +++A E + + C C G C + + L K N Sbjct: 59 SGGCRLGCDLRTATLYQLIEAVETNARLTSCMTPG-YQCEWRGRYGSPCTIHTQLAKVQN 117 Query: 117 AFFDVLTQYSIECLVRNRSS 136 A S+ L+ + Sbjct: 118 AIDQEFRSRSLYWLLNGEEN 137 >gi|320102385|ref|YP_004177976.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319749667|gb|ADV61427.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida ATCC 43644] Length = 137 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D P + +IA I E +L +IL L AG+V++VRG GG RL RP ++T+ +V++ Sbjct: 24 RDEPIPLREIAAEDGIPERYLVQILLQLKGAGLVQSVRGSTGGYRLARPPHRLTLGEVIR 83 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 A S L V R A + +L Q ++ LV S Sbjct: 84 AIGGSASPLPQPLGPGGR-------ALAQVWRAIEQAEWSILDQTTLAQLVPPEDS 132 >gi|255532922|ref|YP_003093294.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM 2366] gi|255345906|gb|ACU05232.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM 2366] Length = 155 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 4/147 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + +YG+R+L+ H+ I I+EA +S ++ K+ + L AG + + G Sbjct: 1 MKITAQEEYGLRILLRIGRHDHGDGISIPAISEAEGLSGAYVAKLTRILRMAGYINSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116 +GG L + A QI I V+K + + + + C C + S+ + Sbjct: 61 NKGGYVLAQTAGQININQVMKVLGGALYSKKFCEDYPGTLKLCTNSIDCSIRSLWQMIQF 120 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143 +L + +++ L+ + + Sbjct: 121 TVDQLLDKVTLQDLISQEQESSLLLES 147 >gi|168182103|ref|ZP_02616767.1| rrf2 family protein [Clostridium botulinum Bf] gi|237793605|ref|YP_002861157.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] gi|182674586|gb|EDT86547.1| rrf2 family protein [Clostridium botulinum Bf] gi|229263550|gb|ACQ54583.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657] Length = 143 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +++ L +AG+V + G Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + DQIT+LDV +A E + + + S I+CP+ + + VL A Sbjct: 61 GGAYLL-KDLDQITLLDVYRAVEVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQE 119 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A VL ++E +V R IKK Sbjct: 120 AMEQVLENVTMEYIVTGIRKKIKK 143 >gi|330836544|ref|YP_004411185.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] gi|329748447|gb|AEC01803.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides DSM 17374] Length = 146 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y + L++ A+ D I+E IS +L ++ PL + I++ R Sbjct: 1 MRISTRGRYSLEALLFIALVQDAESIVSAHLISEKTGISYGYLEQLFIPLKRTRIIKGSR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG R+ D+IT+ D++++ E S + S + + + Sbjct: 61 GAKGGYRIASDLDKITVGDILRSVENSLKDSSRPDSAVRQDISNPIPKVKETWAELHDTI 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 + ++ +V + + Sbjct: 121 SGFIDSLTLADVVSSYHKMND 141 >gi|82659477|gb|ABB88853.1| putative transcriptional regulator [Azospirillum brasilense] Length = 151 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K+ + I ++ A + P + +I I + +L ++LQ LV+ G++ VRG Sbjct: 3 RISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVRDGVLAGVRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL R +IT+ ++VK + ++G + + + Sbjct: 63 RGGYRLARERRRITLGEIVKVVRSMETATDPIEEPAGS--ILGHKVVRPLWNELQEECMK 120 Query: 121 VLTQYSIECLV 131 L +IE L Sbjct: 121 KLDDITIEDLC 131 >gi|257054249|ref|YP_003132081.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256584121|gb|ACU95254.1| rrf2 family protein, putative transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 156 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + ++ + + + D P +++A+ + +L K LQ L + I+ +V G Sbjct: 1 MRLGQAVEWMLHTCLNLSWV-DEPVSTARLADIYRLPSAYLNKQLQALAREKILVSVPGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF------ASHKIDCPLVGSCGLTSVLRKA 114 RGG RL R +I++LDVV A E C D C ++ +R+A Sbjct: 60 RGGFRLARDPAEISLLDVVVAVEGKAEAFRCAQILRNGPGGDPDVDYSSYCVVSQSMRRA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A+ L +I + + Sbjct: 120 ELAWRRELAGRTIADIAAD 138 >gi|159901882|gb|ABX10616.1| transcriptional regulator [uncultured planctomycete 6N14] Length = 141 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R Y ++ AI ND P I +I + + FL +IL+ L G V+++R Sbjct: 1 MVISARVHYACVAMLELAIQNDEGSPVAIREITDRHGVPGPFLVQILRSLRALGWVQSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG RL IT+LD+ +A S C K P+ L A A Sbjct: 61 GSQGGYRLSVDPATITLLDIAEAI-GSQE-TGCRTEAKGT-PIAAM--LQEQWDDAAEAS 115 Query: 119 FDVLTQYSIECLVRN 133 VL Q ++ LV Sbjct: 116 RRVLGQATLSGLVER 130 >gi|328880478|emb|CCA53717.1| Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family [Streptomyces venezuelae ATCC 10712] Length = 151 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R DY +R + A D P + IAE IS FL IL + K G+V++ RG Sbjct: 1 MRISARADYAVRAALQLAAAQDAGPLKAEAIAEDQGISHKFLEGILGDMRKGGLVQSQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAF 118 GG L RPA+ I++ +V++ + D G L ++ Sbjct: 61 GNGGYWLARPAESISVAEVIRCVDGPLVSVR--GERPPDLSYTGPAESLLTLWIALRAGV 118 Query: 119 FDVLTQYSIECLVRNR 134 +VL S+ + R Sbjct: 119 REVL-GVSLAEVAAAR 133 >gi|331084569|ref|ZP_08333668.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401000|gb|EGG80597.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium 6_1_63FAA] Length = 141 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR ++Y ++I+ I +L K+L L KA + + G Sbjct: 1 MQLNVTTDYAIRTVLYLGQCK-KLASATEISNEMKIPRGYLEKVLSKLKKAEYISSDLGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 RGG RL ++IT+ DV++ E + + C C V C + K Sbjct: 60 RGGYRLNMTLEEITLGDVIRLMENATKINRCLEEDMF-CNRKAVDYCAVRRYYEKVQKKL 118 Query: 119 FDVLTQYSIECLVR 132 + S++ ++ Sbjct: 119 ENHFFTISLKEILE 132 >gi|81230337|ref|YP_398716.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|215481753|ref|NP_665782.3| ANL44 [Synechococcus elongatus PCC 7942] gi|157400503|gb|AAM81169.3|AF441790_40 ANL44 [Synechococcus elongatus PCC 7942] gi|81170309|gb|ABB58647.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 144 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ Y + L+ A +I +IA + +L +IL L K G + + R Sbjct: 1 MAVSSTFRYALIALIEVAKIRETGGVLQIEEIASQQHLPTKYLGQILTLLRKQGFLISQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GR GG RL R QI ++D+ + EE+ SH + + +L + A+ Sbjct: 61 GRHGGYRLAREPWQIRLIDIYYSLEEAQQAGASLPSHAT----SSAMVVDQLLHQIEAAW 116 Query: 119 FDVLTQYSIECLVRNRSSI 137 + L Y+++ L + Sbjct: 117 REPLEHYTLQDLRDQAEGL 135 >gi|209966309|ref|YP_002299224.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] gi|209959775|gb|ACJ00412.1| rrf2 family protein (putative transcriptional regulator) [Rhodospirillum centenum SW] Length = 151 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+K+ + I ++ A + P + ++I I + +L ++LQ LV+AG++ VRG Sbjct: 3 RLSKKLVFAIETVLDIAYNAGSAPVQSAEITARQGIPKRYLEQVLQALVRAGVLAGVRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL + +IT+ ++V+ + +G + + + Sbjct: 63 RGGYRLAKERRRITVGEIVRVVRSLEQATDPIEEPAGS--ELGMRVVRPLWAELQEEVMQ 120 Query: 121 VLTQYSIECLV 131 L + SIE L Sbjct: 121 RLDRTSIEDLC 131 >gi|254445085|ref|ZP_05058561.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] gi|198259393|gb|EDY83701.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] Length = 137 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + DY R L A + +RI ++A+ I +L +IL L G++E+ R Sbjct: 1 MKLSVKLDYACRALARMASRRPSGELSRIEELADVEAIPANYLVQILGELRNGGLIESRR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G++GG L R ++IT+ +V+ + F S GS + + + F Sbjct: 61 GKQGGYLLARAPEEITLREVIALVQGDV-----FGSVANPVGGSGS-TVAKTWKVLQDCF 114 Query: 119 FDVLTQYSIECLVRN 133 ++ ++ L+ + Sbjct: 115 EQKASELTVRDLMPD 129 >gi|328883585|emb|CCA56824.1| Predicted transcriptional regulator of 4-carboxymuconolactone decarboxylase, Rrf2 family [Streptomyces venezuelae ATCC 10712] Length = 157 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ ++ + + A I + +++A + +L K LQ L +AGIV +V G + Sbjct: 1 MSDGVEWALHSCLNLAWIGSGQAVTAARLAAYHELPPAYLNKQLQALARAGIVTSVSGPK 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKAL 115 GG RL R D+IT++DVV A E C C + + +A Sbjct: 61 GGFRLARALDRITLMDVVAAIEGPDEAFRCTEIRQQGPGAAAPESYAAECAIAGAMSRAE 120 Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138 A+ L +++ VR R+ ++ Sbjct: 121 LAWRRELMAQTLDD-VRARAELQ 142 >gi|253577980|ref|ZP_04855252.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850298|gb|EES78256.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 135 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RV+ A+ + +S I E I+ F +KIL+ L KA IV+ RG Sbjct: 1 MFITRECDYAVRVVR--ALWGESRLSVSDICEKEAITAPFAYKILKKLQKAEIVKGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG L R D++T+ +V A + F+ EC K +C G C + L + Sbjct: 59 HGGYSLNRGLDELTLYEVYSAIDPDMFIIECL-DPKYNCVRDGQDGLPCLVHRELLSVQD 117 Query: 117 AFFDVLTQYSIECLVRN 133 +L + +I+ ++ Sbjct: 118 ELISLLKRKTIQQIMEE 134 >gi|227538160|ref|ZP_03968209.1| possible transcription regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242003|gb|EEI92018.1| possible transcription regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 149 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 7/143 (4%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R +MY A I +IAEA E FL KILQ L K G++ + +G Sbjct: 8 FSKTCEYALRAVMYIAQCSQQGEKVGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 67 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + + D+V + + C C C L +K F Sbjct: 68 NGGFYMTPEDTKRPLADIVSSIDGVQLFEGCAMGLDY-CSKENPCPLHHDFKKIRKKLFV 126 Query: 121 VLTQYSIE----CLVRNRSSIKK 139 +L + SI L++ ++ K Sbjct: 127 MLQETSIGQFNMDLIKGNFTLSK 149 >gi|291532974|emb|CBL06087.1| Predicted transcriptional regulator [Megamonas hypermegale ART12/1] Length = 75 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + Y +R+++ A+++ P RI IAE IS+ +L +I+ L KAG V+++RG Sbjct: 1 MKISTKGRYALRLMLDIALNDAKTPVRIKDIAERQQISDKYLEQIVSSLNKAGFVKSLRG 60 Query: 60 RRGGVRLCRPADQI 73 +GG RL + I Sbjct: 61 PQGGYRLTKNQKSI 74 >gi|331092088|ref|ZP_08340919.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402289|gb|EGG81860.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium 2_1_46FAA] Length = 132 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TDYGIR+++Y I N+ + ++E I + ++ K+ + L A IV +G Sbjct: 1 MQLSVTTDYGIRIVLYL-IKNNEVTSSAILSEKLDIPKTYVLKVTKKLEAANIVACYQGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 GGV L ++I++ DVV ATE + + +C + C +C + V A Sbjct: 60 NGGVNLLPRPEEISLWDVVIATETTTAINKCLDTDGC-CNRHAEDTCKVREVYLVLQKAV 118 Query: 119 FDVLTQYSIECLVR 132 + + + L Sbjct: 119 EERMQNIKLIDLAE 132 >gi|288957208|ref|YP_003447549.1| transcriptional regulator [Azospirillum sp. B510] gi|288909516|dbj|BAI71005.1| transcriptional regulator [Azospirillum sp. B510] Length = 151 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K+ + I ++ A + P + +I I + +L ++LQ LV+ G++ VRG Sbjct: 3 RISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVREGVLAGVRGP 62 Query: 61 RGGVRLCRPADQITILDV---VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RGG RL R +IT+ ++ V+A E + E + ++G + + + + Sbjct: 63 RGGYRLARERRRITLGEIVKVVRAMETATDPIE-----EPAGSVLGHQVVRPLWGELQDE 117 Query: 118 FFDVLTQYSIECLV 131 L +IE L Sbjct: 118 CMAKLDTITIEDLC 131 >gi|310827114|ref|YP_003959471.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612] gi|308738848|gb|ADO36508.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612] Length = 134 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 4/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R++ A + +SQ+++ I + F +KI++ L +AG+V RG Sbjct: 1 MLITRETDYALRLVRSLA--DGERRSVSQLSDEEQIPKAFAYKIIKKLERAGLVSIARGS 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSCGLTSVLRKALNAF 118 GG L +P I++ D++ A + S ++ C S C GSC + L Sbjct: 59 EGGCSLNKPTSAISLYDLMCAIDGSCSLSPCMESGYRCEWCEKHGSCCFHNHLMVIQEEL 118 Query: 119 FDVLTQYSIECLVR 132 D L S+E +++ Sbjct: 119 NDRLKASSLEEILK 132 >gi|217077940|ref|YP_002335658.1| Rrf2 family protein [Thermosipho africanus TCF52B] gi|217037795|gb|ACJ76317.1| Rrf2 family protein [Thermosipho africanus TCF52B] Length = 148 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE-ACCISELFLFKILQPLVKAGIVETVRG 59 M +T ++DY +R+L+ +I N + I++ I F KIL LV +GI+E+ RG Sbjct: 1 MAVTMKSDYALRLLLLLSIENKRMSTSELISKCKTSIPYEFAQKILSQLVASGILESSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + IT+ D+V + ++ + CF C + V + F Sbjct: 61 KFGGYKLVKDPKDITVYDIVTSVDDISSMITCFVPPDKISLAPEICSVNEVWEIVMKRFK 120 Query: 120 DVLTQYSIECL 130 L ++E L Sbjct: 121 QSLKSVTLEDL 131 >gi|220928362|ref|YP_002505271.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Clostridium cellulolyticum H10] gi|219998690|gb|ACL75291.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulolyticum H10] Length = 148 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI ++ A N + I+E IS+++L ++ L ++ +V +V+ Sbjct: 1 MRISSKGRYGIAAMICVAQLGRNGDFVTVISISEKLGISKIYLEQVFSLLKRSKLVNSVK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L + +++IT D+++A E S F E S + + L V K + Sbjct: 61 GSQGGYHLAKSSERITAYDILQAVELSLFEKTERSVSAQAEGIEKSISSL--VWDKLDES 118 Query: 118 FFDVLTQYSIECLV 131 +VL ++ LV Sbjct: 119 ICEVLKNTTLRDLV 132 >gi|225871965|ref|YP_002753419.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196] gi|225791981|gb|ACO32071.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196] Length = 145 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R G+ ++ A D IA + + + ++ L AG+V++ +G Sbjct: 1 MAVNTRFATGVHAMVLLAAEPDTLQTSETIAGRLETNPVVVRRVFSLLHHAGLVDSHKGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG +L RPA QIT+ D+ KA + F FAS + + L V + + Sbjct: 61 SGGSKLARPAKQITLADIYKALDTGDLFHTAEFASEEAA---HTASALHQVFKNIERSLR 117 Query: 120 DVLTQYSIECL 130 D L++ ++ + Sbjct: 118 DELSKTTLSQI 128 >gi|310815934|ref|YP_003963898.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium vulgare Y25] gi|308754669|gb|ADO42598.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium vulgare Y25] Length = 142 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L+ A+ + + +I++ IS +L ++ L +A +VE+ RG GG +L RP D Sbjct: 3 ALVDLALQPESALVNLGEISKRQDISLPYLEQLFVKLRRADLVESARGPGGGYKLARPMD 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 QI++ D+++A +E+ A + LT+ L + L+A + L Q + + Sbjct: 63 QISVADILEAVDETVSAMHKGAGVSGGLSGSRAQSLTNRLWEGLSAQVYVFLHQTKLSDI 122 Query: 131 VRNR 134 V+NR Sbjct: 123 VKNR 126 >gi|327540342|gb|EGF26928.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47] Length = 139 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 3/141 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+K +Y +R + P +AE + +L ++LQ L AG+V + G G Sbjct: 2 LSKTAEYALRAIACMGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G LC P D +TILDVV + +C K L C L + L + A + Sbjct: 62 GYELCVPTDTLTILDVVNTVAPVERIRKCPLGLKSHTDL---CPLHAELDRVYAATEEAF 118 Query: 123 TQYSIECLVRNRSSIKKIFNA 143 +I+ LV + + I + + Sbjct: 119 RGVTIDDLVNSTNPILPLCES 139 >gi|150025901|ref|YP_001296727.1| hypothetical protein FP1858 [Flavobacterium psychrophilum JIP02/86] gi|149772442|emb|CAL43924.1| Protein of unknown function YjeB [Flavobacterium psychrophilum JIP02/86] Length = 139 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L TD+ +R+LMY + ++++ IS L K++Q L K + T RG Sbjct: 1 MKLNHFTDFSMRILMYLNHQKEGKTTSLDELSDQFKISRNHLIKVVQFLSKNQYIHTKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNA 117 + GG+ + I + +++ E ++ + C C L C L + + + Sbjct: 61 KNGGIHISNETKTIPLGNLINILEQDNSPIINC---DSKPCVLAPHNCKLKYIFQLGYQS 117 Query: 118 FFDVLTQYSIECL 130 F + L Q+++ L Sbjct: 118 FINTLNQFTLSDL 130 >gi|152993458|ref|YP_001359179.1| BadM/Rrf2 family transcriptional regulator [Sulfurovum sp. NBC37-1] gi|151425319|dbj|BAF72822.1| transcriptional regulator, BadM/Rrf2 family [Sulfurovum sp. NBC37-1] Length = 132 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ T+Y + L + D P Q+A I + FL KILQ + K GI+E+ +G Sbjct: 1 MLLTRATEYALLSLDSIS-KADKPVGAEQLANELNIPKSFLAKILQNMAKQGILESRKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 GG L + + ITI ++ A E V +C +S+ CP G+C ++ + Sbjct: 60 HGGFVLAQTINDITINSIIFAAEGKLPAVFDC-SSYSETCPNGAIGTCVISPFIANFQTK 118 Query: 118 FFDVLTQYSIECLV 131 + L ++ ++ Sbjct: 119 INNFLEGLTLGDIL 132 >gi|313669379|ref|YP_004049806.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313156576|gb|ADR35253.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 137 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 1/111 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH +K +Y IRVL Y H++ + ++ + + + +L K++ LVK G+V RGR Sbjct: 1 MHFSKTAEYAIRVLSYLYRHHESSHSVNVLHQELVLPYKYLTKMVTDLVKKGLVNASRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 GG+ L + ADQI + D+++A E C + C C L Sbjct: 61 EGGISLAKNADQIRLRDILEAIGEPLEHERCILGFE-KCDASNPCALHEQW 110 >gi|302875321|ref|YP_003843954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307688174|ref|ZP_07630620.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302578178|gb|ADL52190.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 143 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + YG++ ++ A ++ + I I E +SE +L +I L K GI+ +G Sbjct: 1 MKISTKGIYGLKAIVDLACYSVNEVVTIKSICERQGLSERYLEQIFSLLRKNGIIVGRKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86 +GG L + ++T+ +++ A E Sbjct: 61 SQGGYTLAKKPKELTVYEILTALEGEL 87 >gi|292670938|ref|ZP_06604364.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] gi|292647559|gb|EFF65531.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas noxia ATCC 43541] Length = 147 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ ++ A + P I I+E IS+++L ++ L ++ +V +++ Sbjct: 1 MKISAKGRYGLAAMIVLARSYESSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L R +IT +++ + E + E + + + + Sbjct: 61 GSQGGYQLSRHPREITAYEILSSIE--ISLIEKTGTVSEKMDQLNHVLARELFDQLDKNI 118 Query: 119 FDVLTQYSIECLV 131 F+ L ++E L+ Sbjct: 119 FETLNAITLEGLL 131 >gi|148378286|ref|YP_001252827.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|153933591|ref|YP_001382687.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|153936117|ref|YP_001386238.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|153937936|ref|YP_001389653.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|168177627|ref|ZP_02612291.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|170754327|ref|YP_001779938.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|226947508|ref|YP_002802599.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|148287770|emb|CAL81836.1| Rrf2-family transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152929635|gb|ABS35135.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397] gi|152932031|gb|ABS37530.1| rrf2 family protein [Clostridium botulinum A str. Hall] gi|152933832|gb|ABS39330.1| rrf2 family protein [Clostridium botulinum F str. Langeland] gi|169119539|gb|ACA43375.1| rrf2 family protein [Clostridium botulinum B1 str. Okra] gi|182670341|gb|EDT82315.1| rrf2 family protein [Clostridium botulinum NCTC 2916] gi|226842307|gb|ACO84973.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto] gi|295317743|gb|ADF98120.1| rrf2 family protein [Clostridium botulinum F str. 230613] gi|322804550|emb|CBZ02101.1| rrf2 family transcriptional regulator, group III [Clostridium botulinum H04402 065] Length = 143 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +++ L +AG+V + G Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + DQIT+LDV +A + + + + S I+CP+ + + VL A Sbjct: 61 GGAYLL-KDLDQITLLDVYRAVDVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQE 119 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A VL ++E +V R IKK Sbjct: 120 AMEQVLENVTMEYIVTGIRKKIKK 143 >gi|37525899|ref|NP_929243.1| hypothetical protein plu1977 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785328|emb|CAE14270.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 154 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L A+H+ R IA++ + + ++L L +AG+ + G+ Sbjct: 1 MPTSTRFAVAIHILTDIALHHGQAVRSEDIAKSVNTNPTVVRRLLGALAEAGLTYSQMGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RP++QI++LD+ +A E+ + + C + + L + Sbjct: 61 GGGALLARPSNQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNITPVLEDEFSRVTCVL 120 Query: 119 FDVLTQYSIECLVRN 133 L + ++ +V Sbjct: 121 ETALAETTVADIVNR 135 >gi|262196227|ref|YP_003267436.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Haliangium ochraceum DSM 14365] gi|262079574|gb|ACY15543.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum DSM 14365] Length = 140 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R + +L P IA + + + ++L L KAG+ + RG G Sbjct: 1 MNTRFAVAVHILTLLQAQAGEPASSEWIAGSVNTNPALIRRLLSQLAKAGLTRSQRGAGG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 G L R AD IT+ DV +A + V A+ CP+ L L+ A A Sbjct: 61 GALLARSADSITLADVYQAVSDDADVIPIHAAPNPKCPVGRHIESALAVHLQAAEQALQV 120 Query: 121 VLTQYSIECLVRN 133 L + +I L ++ Sbjct: 121 ELARTTIASLTQD 133 >gi|170760968|ref|YP_001785621.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407957|gb|ACA56368.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree] Length = 143 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +++ L KAG+V + G Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKKAGLVSVIAGT 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + DQIT+LDV +A E + + + S I+CP+ + + +L A Sbjct: 61 GGAYLL-KDLDQITLLDVYRAVEVVKEGELFQFHDSPNINCPIGANIQSVMEGILLNAQE 119 Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139 A VL ++E +V R I+K Sbjct: 120 AMEQVLENVTMEYVVAGIRKKIEK 143 >gi|288923812|ref|ZP_06417900.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] gi|288344839|gb|EFC79280.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f] Length = 151 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A + + +A A + FL IL L ++G+V++ RG Sbjct: 1 MQISARADYALRALLTLAASDGNLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +LCRPA+ ITI V++AT+ L V Sbjct: 61 DGGYQLCRPAEDITIATVIRATDGPLASVRGRPPETAHYEGAAK-HLQDVWIATRVNLRR 119 Query: 121 VLTQYSIECLVRNR 134 VL ++ + + Sbjct: 120 VLEAVTLADVASGK 133 >gi|28210311|ref|NP_781255.1| hypothetical protein CTC00575 [Clostridium tetani E88] gi|28202747|gb|AAO35192.1| conserved protein (RRF2 family protein) [Clostridium tetani E88] Length = 138 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M++T+ DYGIR ++ A + IAE I FL K+L+ L++AGIV + RG Sbjct: 4 MNITQEADYGIRAVLILAKEGEGEKLDAKTIAERGNIPLRFLLKLLRKLIQAGIVRSYRG 63 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118 GG L + ++ I + +V+++ + V C + C + LRK N F Sbjct: 64 VNGGYALNKHSEDINLKEVIESIDGPIAVNRCITDKDFCNAKKTEICVVHKELRKVQNIF 123 Query: 119 FDVLTQYSIECL 130 L + + L Sbjct: 124 VKELEKITFSKL 135 >gi|300772784|ref|ZP_07082654.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761087|gb|EFK57913.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 145 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 11/145 (7%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y +R +MY A I +IAEA E FL KILQ L K G++ + +G Sbjct: 4 FSKTCEYALRAVMYIAQCSQQGEKAGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 63 Query: 61 RGGVRLCRPADQI--TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 GG + + D+V++ + S C C C L +K Sbjct: 64 NGGFY--MDPEDTKRPLADIVRSIDGSQLFEGCAMGLDY-CSKENPCPLHHDFKKIRKKL 120 Query: 119 FDVLTQYSIE----CLVRNRSSIKK 139 +L + SI L++ ++ K Sbjct: 121 SVMLQETSIGQFNMDLIQGNFTLSK 145 >gi|56696277|ref|YP_166634.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] gi|56678014|gb|AAV94680.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3] Length = 164 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 10 GIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 + A + +A +SE +L K ++ L AG+ E V G RGG RL R Sbjct: 11 ALHCAAVLAELPEGKVLSGRDLAALHGVSESYLLKHMRALTAAGVTEAVPGPRGGFRLAR 70 Query: 69 PADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCGLTSVLRKALNAFFDV 121 Q+++LDVV+A + C + C C + + A A+ Sbjct: 71 APRQVSLLDVVEAVDGPGPAFVCREIRRKGDVTSNDPCAYRKDCFIKRRMLSAEQAWRTA 130 Query: 122 LTQYSIECLVRNRSS 136 L ++ L+ + + Sbjct: 131 LRGQTLADLMADARA 145 >gi|78776924|ref|YP_393239.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78497464|gb|ABB44004.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas denitrificans DSM 1251] Length = 133 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ ++Y I L+ + + P ++ I + FL KILQ + K GI+++ +G Sbjct: 1 MLITRASEYAILSLIVLSKAS-APMDSETLSTQLSIPKSFLAKILQAMAKHGILKSFKGV 59 Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L I +L V+ + E V EC + CP + C L L K Sbjct: 60 NGGFSLLLEPKDIKMLQVIASVEGKAPAVFEC-SPSMYSCPSGKAQLCSLWPFLNKLQGK 118 Query: 118 FFDVLTQYSIECLVR 132 L ++ ++ Sbjct: 119 IDSFLADLTLADILE 133 >gi|209522489|ref|ZP_03271083.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] gi|209497074|gb|EDZ97335.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160] Length = 149 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLAMLSDAGLTTSQMGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +QIT+LDV +A E++ C + + L S++ +A A Sbjct: 61 GGGALLARRPEQITLLDVYRAVEDAQLFGVHREEPNPACMVGRNIQGVLRSIIDEAQQAM 120 Query: 119 FDVLTQYSIEC 129 L ++ Sbjct: 121 EAALAGRTLAD 131 >gi|289434461|ref|YP_003464333.1| transcriptional regulator Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170705|emb|CBH27245.1| transcriptional regulator Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 141 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +I+ L KAG++ + G Sbjct: 1 MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 G L + A +IT+ D+ A + + + + + +C + + L +V A Sbjct: 61 SGTYLL-KEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQDTLDTVFNHAQQQM 119 Query: 119 FDVLTQYSIECL 130 L + ++ + Sbjct: 120 EADLKRTNLSQI 131 >gi|260654665|ref|ZP_05860155.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] gi|260630681|gb|EEX48875.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] Length = 133 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P + IA+ +S+ +L +++ L +AG++ + RG GG L + +ITIL++V+A+ Sbjct: 14 PVSVMDIAQREELSDTYLEQLVSKLRRAGLLRSYRGANGGYELAKDPSEITILEIVQASG 73 Query: 84 ESFFVAECFASHKIDCPLV----GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 E EC + K C L C RK +A ++ ++E L+ S Sbjct: 74 EKLEFPECAFNEKG-CELARQRGSVCPSAFFWRKLSSAVLELSRSMTLEDLLSQSSK 129 >gi|167772123|ref|ZP_02444176.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM 17241] gi|167665921|gb|EDS10051.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM 17241] Length = 130 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T DY +R++ A H ++ A ++ F KIL+ LV GIV + +G Sbjct: 1 MYITLEADYAVRIVDCLAQHQ-MRMDAKSLSAATGVTLRFALKILRKLVAEGIVRSYKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 +GG L RPA +I + +V++ E ++ C C V C Sbjct: 60 QGGYELARPAGEIALGEVIEIVEGPIVISRCVGDDTFQCSRVEKCA 105 >gi|58617149|ref|YP_196348.1| hypothetical protein ERGA_CDS_04220 [Ehrlichia ruminantium str. Gardel] gi|58416761|emb|CAI27874.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 145 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 P RIS IA +SE +L +++ L K G++ +G GG L IT+ ++++ Sbjct: 18 QPVRISYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESI 77 Query: 83 EESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 E+ + C ++ DC C + N D L S+E +V N Sbjct: 78 GENIKITRC-ENNSPDCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNN 129 >gi|260655751|ref|ZP_05861220.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] gi|260629367|gb|EEX47561.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1] Length = 152 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+ L+ + P ++E+ S+ L K+LQ L AG V +RG GG +L Sbjct: 4 GLHALVALGREPEQPRTTETLSESIGCSKTHLSKVLQKLCHAGYVTALRGPGGGYQLALR 63 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 ++I +L V + F C H + C + +++ + AF D L + Sbjct: 64 PEKICMLHVFELLGGPFIPTGCTVDHHQN----EPCLIGAMMDELTIAFRDYLATKTFYH 119 Query: 130 LVR 132 L+R Sbjct: 120 LLR 122 >gi|329945233|ref|ZP_08293064.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon 170 str. F0386] gi|328529276|gb|EGF56197.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon 170 str. F0386] Length = 165 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 10/153 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K ++ L+ + + +A +S +L K LQ L AGIV +V G Sbjct: 1 MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112 GG RL +PA ++++ DVV A + + +C F K G C + + Sbjct: 61 SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFVDQKSRILASGLCSINRAMS 120 Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFNA 143 A +A+ L SI L + ++ ++ A Sbjct: 121 LAEDAWRASLAGTSIADLAAGLDNATRTRMLQA 153 >gi|86742249|ref|YP_482649.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3] gi|86569111|gb|ABD12920.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3] Length = 151 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A N + +A A + FL IL L +AG+V++ RG Sbjct: 1 MQISARADYALRALLTLAASNGRLVKGEALAAAQDLPLRFLENILTDLRRAGLVQSRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L P ++ITI V++AT+ + L V Sbjct: 61 DGGYQLSLPPERITIATVIRATDGPLASVRGRRPEDTNYDGAAK-HLQDVWIAVRVNLRR 119 Query: 121 VLTQYSIECLVRNR 134 VL ++ + + Sbjct: 120 VLEAVTLADVASGQ 133 >gi|89054908|ref|YP_510359.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1] gi|88864457|gb|ABD55334.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1] Length = 141 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R +L A+ D P IA+ + + KI+ L ++GI + G Sbjct: 1 MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 +GG L R +QIT+LDV +A + A CP+ G L V KA A Sbjct: 61 KGGTHLARAPEQITLLDVYRAVDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAM 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 L SI + + Sbjct: 121 EAELAAVSIAAIADKLKPL 139 >gi|149180394|ref|ZP_01858899.1| possible transcriptional regulator (rrf2 family protein) [Bacillus sp. SG-1] gi|148852586|gb|EDL66731.1| possible transcriptional regulator (rrf2 family protein) [Bacillus sp. SG-1] Length = 141 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++ + L+Y A D+ IA+ + + + KI+ L G V+T G Sbjct: 1 MYVNSEFTIAVHSLVYLAYLPDHMASSQAIAQNVATNPVRVRKIMSCLRDTGFVKTKEGT 60 Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L IT+ V ++ + C + C + + + + +A Sbjct: 61 GGGYTLTAEPGDITLGQVYRSVSYGAIKPTWCKGEREESCLISTNIQEVVNGIFTEADQY 120 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 F + L + +IE ++ + Sbjct: 121 FAEYLDKTTIESVLNQIRQTR 141 >gi|260464287|ref|ZP_05812479.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] gi|259029911|gb|EEW31195.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium opportunistum WSM2075] Length = 172 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + I A + + + +AE+ +S +L K L L A I+E+V G Sbjct: 1 MKLGEGVEAAIHCAATLASVEGNSTMPGAALAESFGLSPSYLLKHLNMLTAARILESVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRK 113 GG RL +PA++IT+LD+V A E C + + + CG+ + + K Sbjct: 61 PAGGYRLAKPAERITLLDIVLAVEGREPAFRCGEIRRNGPVKLDASAYVKPCGINAAMLK 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A+ L + + +V Sbjct: 121 AERAYRAALAETRLSDIVA 139 >gi|284034151|ref|YP_003384082.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813444|gb|ADB35283.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM 17836] Length = 158 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 ++G+ + + ++A + +L K LQ L +AGI+ + G +GG +L Sbjct: 5 VEWGMHTCVNLSWMPGEALPAKKLAAFYELPTAYLNKQLQALTRAGILSSTSGPKGGFQL 64 Query: 67 CRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVG---SCGLTSVLRKALNAFFD 120 RP D+IT+LD+V A + C + P +C ++ +R+A + Sbjct: 65 ARPTDRITLLDIVVAIDGPDEAFRCTEILKAGPGADPREDYRTTCLISQAMRQAELVYRR 124 Query: 121 VLTQYSIECLVRN 133 L +I +V + Sbjct: 125 ELAARTIADIVAD 137 >gi|312194978|ref|YP_004015039.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c] gi|311226314|gb|ADP79169.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c] Length = 151 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 1/134 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R DY +R L+ A + + +A A + FL IL L ++G+V + RG Sbjct: 1 MQISARADYALRALLTLAASDGGLVKGETLASAQDLPLRFLENILTDLRRSGLVASRRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG +L RPA +I + V++AT+ ++ L V + Sbjct: 61 EGGYQLARPAAEIDVATVIRATDGPLAGVRGRRPEEVTYEGAAK-NLQDVWIAVRVSLRQ 119 Query: 121 VLTQYSIECLVRNR 134 VL ++ + Sbjct: 120 VLESVTLADIASGE 133 >gi|153812327|ref|ZP_01964995.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174] gi|149831489|gb|EDM86576.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174] Length = 134 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RVL A + +++I E I+ F +KIL+ L K+G+V RG Sbjct: 1 MLITRECDYAVRVLRAMA--EEKRVSVNEICEKELITAPFAYKILKKLQKSGMVRGYRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKALN 116 GG L DQIT+ DV + F+ +C DC + C + L + Sbjct: 59 HGGYSLNCDLDQITLYDVYTTIDPGMFIIDCLEPG-YDCARNSADGQNCSVHCELAEIQE 117 Query: 117 AFFDVLTQYSIECLVR 132 +L + S++ L+ Sbjct: 118 ELCRMLKRKSLKKLIN 133 >gi|15605808|ref|NP_213185.1| hypothetical protein aq_268 [Aquifex aeolicus VF5] gi|2982976|gb|AAC06590.1| hypothetical protein aq_268 [Aquifex aeolicus VF5] Length = 156 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D ++ +IA+ I FL K++ L K G+V +V+G RGG L + D+ITI D++ Sbjct: 32 NRDRLVKVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDII 91 Query: 80 KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVR 132 + +++ C + C + + + D +I+ L+ Sbjct: 92 ELFGDAYKYEMCLLMPHKCSEFADNPCIVHHKWEELKSQIQDFFKGTTIKDLIN 145 >gi|20140436|sp|O66625|Y268_AQUAE RecName: Full=Putative HTH-type transcriptional regulator aq_268 Length = 144 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D ++ +IA+ I FL K++ L K G+V +V+G RGG L + D+ITI D++ Sbjct: 20 NRDRLVKVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDII 79 Query: 80 KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVR 132 + +++ C + C + + + D +I+ L+ Sbjct: 80 ELFGDAYKYEMCLLMPHKCSEFADNPCIVHHKWEELKSQIQDFFKGTTIKDLIN 133 >gi|313618824|gb|EFR90710.1| Rrf2 family protein [Listeria innocua FSL S4-378] Length = 83 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKAT 82 GG L ++IT D+++ Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTL 83 >gi|302875241|ref|YP_003843874.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] gi|307687906|ref|ZP_07630352.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium cellulovorans 743B] gi|302578098|gb|ADL52110.1| transcriptional regulator, BadM/Rrf2 family [Clostridium cellulovorans 743B] Length = 132 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY +R ++ A IAE+C I FL K+L+ L KA +V + RG Sbjct: 1 MKITQESDYALRAVVNIAEKYPNKIEAKVIAESCDIPLRFLLKLLRKLTKAHVVRSYRGI 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118 GG L + IT+ V++A E + +C ++ C G C ++ LRK + Sbjct: 61 NGGYALATNPEDITMASVIEAIEGPIILNKCIQDKEL-CSNNRKGKCNISMELRKIQESL 119 Query: 119 FDVLTQYSIECLV 131 L I L+ Sbjct: 120 LKELRSRKISDLL 132 >gi|282901029|ref|ZP_06308962.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] gi|281194120|gb|EFA69084.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis raciborskii CS-505] Length = 160 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 7/135 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + +Y + L+ AI++ I+ IA I E +L +IL L +AG+V++ RG Sbjct: 20 LSAKVEYALLALLELAINHGKKVTLTINDIAAKQPIPERYLEQILTQLRRAGVVQSQRGS 79 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +GG L R +I++L++V E + + + + +A A + Sbjct: 80 KGGFLLVREPWEISLLEIVSLIEGERN-----EKRNANVLTIEKTLVWEIWERANTASVE 134 Query: 121 VLTQYSIECLVRNRS 135 VL +Y+++ L + R Sbjct: 135 VLGRYTLQDLCQERE 149 >gi|153814508|ref|ZP_01967176.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756] gi|145848002|gb|EDK24920.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756] Length = 95 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 47 PLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105 L KAGIV +VRG GG L + + I++ DV++A E S +C C + SC Sbjct: 1 MLKKAGIVRSVRGAGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSC 60 Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVRNR 134 V +K ++ + + ++ LV+ Sbjct: 61 VTKYVWKKINDSINQTVDEIKLDQLVKEN 89 >gi|330717994|ref|ZP_08312594.1| transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 153 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++ + + VL+ A+ D P + ++ +SE + K ++ L AGIV + Sbjct: 1 MKMSQAVEQSLVVLIMLAVQQDNAPVKSHILSSRLEVSESYFKKTMRKLRIAGIVTAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRK 113 + GG +L RP QIT+LDV +A E S +A+ + G+ + +++ Sbjct: 61 KEGGFKLARPLHQITLLDVYEAIEGEDSFIHSTQLADRIFKGSDELVKSGTKEVLAIIYD 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A AF L Y+I ++ + Sbjct: 121 AEQAFKQKLADYTIADILSH 140 >gi|312196443|ref|YP_004016504.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c] gi|311227779|gb|ADP80634.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c] Length = 159 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ + + + + P +++AE +S +L K LQ L +A +V++V+G+ Sbjct: 1 MRLSGGVETALHCCVVLTAAAE-PVPAARLAELHGVSATYLAKQLQALSRARLVQSVQGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114 GG L RP ++I +LDVV+A + + C C + + A Sbjct: 60 AGGYVLTRPPEEIKVLDVVEAVDGAAPTFVCTEIRQRGPLAAPPEACAAPCAIKRTMIAA 119 Query: 115 LNAFFDVLTQYSIECLVR 132 A+ VL + S+ L R Sbjct: 120 DQAWRAVLREVSVADLAR 137 >gi|292669316|ref|ZP_06602742.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC 43541] gi|292649157|gb|EFF67129.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC 43541] Length = 147 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L+ +++ D P +A + + + + +IL L +AG++ RG Sbjct: 1 MQISSRFTIAIHILICVDLYSADAPATSESLAGSIGVHPVVIRRILGQLRRAGLITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115 R GG + RP +IT+ D+ +A E S + + CP+ + L L + Sbjct: 61 REGGAHIVRPLGEITLADIFRAVESIGSDTLFSFHENPNPACPVGRNIHNVLDGHLAQIQ 120 Query: 116 NAFFDVLTQYSIECLVRN 133 A + Q ++ ++ Sbjct: 121 RAMEHSMEQTTLADVIAE 138 >gi|116872585|ref|YP_849366.1| transcriptional regulator Rrf2 family protein, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741463|emb|CAK20587.1| transcriptional regulator Rrf2 family protein, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 141 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 59/135 (43%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +I+ L KAG++++ G Sbjct: 1 MAISTRFSVAVHILTLIDMNKERSITSDTIAASVNTNPVVIRRIMSKLKKAGLIQSSPGI 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 G L + A +IT+ D+ +A E + + + + +C + + L +V A Sbjct: 61 SGTYLL-KNATEITLYDIYQAVEVTDNLFDIHKNPNPNCEVGANIQETLDTVFIHAQQKM 119 Query: 119 FDVLTQYSIECLVRN 133 L + ++ + + Sbjct: 120 EADLKRTTLSQITAD 134 >gi|163752875|ref|ZP_02159999.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia algicida OT-1] gi|161326607|gb|EDP97932.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia algicida OT-1] Length = 137 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YG++ L Y A D P IS+IA IS+ FL IL L G++ + +G+ Sbjct: 2 LSKKTKYGLKALTYIARKGDEAPVLISEIATEEKISKKFLEAILLQLKNNGLLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + D+I I +++ E + C F DCP CGL ++ + + Sbjct: 62 GGYYLIKTPDEIKIASLIRILEGPIAMLPCVSLNFYEKCDDCPDETKCGLHQLMLEVRDN 121 Query: 118 FFDVLTQYSIECL 130 VL ++E L Sbjct: 122 MLAVLDNKTLEDL 134 >gi|313638249|gb|EFS03485.1| Rrf2 family protein [Listeria seeligeri FSL S4-171] Length = 141 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ + IA + + + + +I+ L KA ++ + G Sbjct: 1 MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKARLIHSSPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118 G L + A +IT+ D+ A + + + + + +C + + +T +V A Sbjct: 61 SGTYLL-KEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQVTLDTVFNHAQQQM 119 Query: 119 FDVLTQYSIECLVRN 133 L Q ++ + N Sbjct: 120 EADLKQTNLSQITAN 134 >gi|307324043|ref|ZP_07603252.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306890492|gb|EFN21469.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 152 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + DY +R + A D + IA A I FL IL L + G+V + RG Sbjct: 1 MRISAKADYAVRAALELAAAGADTSVKAEVIAGAQGIPHKFLEGILGDLRRGGLVASQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118 GG RL RPAD I+I +V++ + ++ C S L + Sbjct: 61 GNGGYRLARPADTISIAEVIRVVDGPLVSVRGVRPPELSYCGPAES--LLPLWIAVRANV 118 Query: 119 FDVLTQYSIECLVRNR 134 +L + ++ + R Sbjct: 119 RKILGEVTLAEVAAAR 134 >gi|83595124|ref|YP_428876.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83578038|gb|ABC24589.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum ATCC 11170] Length = 151 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+K+ + I ++ A H P + +I I +L + LQ LV++G++ VRG Sbjct: 3 RLSKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQHLVRSGVLTGVRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG RL R +ITI ++V+ + + E A ++ +G + + + + Sbjct: 63 RGGYRLARERRRITIGEIVRVVRDLEAIDE--AVDELPGSDLGRQVVRPLWNELHDELMV 120 Query: 121 VLTQYSIECLV 131 L +++ L Sbjct: 121 KLDTLTVDDLC 131 >gi|256026414|ref|ZP_05440248.1| hypothetical protein PrD11_00165 [Fusobacterium sp. D11] gi|260494511|ref|ZP_05814641.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33] gi|289764429|ref|ZP_06523807.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|260197673|gb|EEW95190.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33] gi|289715984|gb|EFD79996.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 140 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDELL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 121 DDFDKINFYDLVENNTGLE 139 >gi|154174055|ref|YP_001408761.1| RRF2 family protein [Campylobacter curvus 525.92] gi|112802637|gb|EAT99981.1| RRF2 family protein [Campylobacter curvus 525.92] Length = 138 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L+ D IA + + + + K+ Q L KAG++E G Sbjct: 1 MQVGTKFSVSIHILLSAEFFKDEKVTSEFIASSVGTNPVIIRKLTQLLKKAGLLEVRAGV 60 Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GGV L + +QIT+LDV +A +E + + A CPL G G L S A NA Sbjct: 61 -GGVNLAKKPEQITLLDVYQAVSDEEKNLFKIHAKSPAACPLGGKIGNLLNSHFLSAQNA 119 Query: 118 FFDVLTQYSIECLVRN 133 L + +++ L+ Sbjct: 120 MQKELGKVTLQDLLDE 135 >gi|315302753|ref|ZP_07873529.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] gi|313628876|gb|EFR97233.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] Length = 140 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ R + +L I+ + IA + + + + +I+ L KAG++ + G G Sbjct: 2 ISTRFSVAVHILTLIDINQERAITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGVSG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 L + A +IT+ D+ A + + + + + +C + + L +V A Sbjct: 62 TYLL-KAASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQDTLDTVFNHAQQQMEA 120 Query: 121 VLTQYSIECLVRN 133 L + ++ + N Sbjct: 121 DLKRTNLSQITAN 133 >gi|157827110|ref|YP_001496174.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii OSU 85-389] gi|157802414|gb|ABV79137.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia bellii OSU 85-389] Length = 128 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ A + D P +++I+ IS +L +I L KA +V+ +RG GG L + Sbjct: 2 AILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRGPNGGYILIGKLE 61 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIEC 129 +I I +++ A E+F + C+ +C C + + D S++ Sbjct: 62 EIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKCNSHKLWKGLGKHIRDYFENISVKD 120 >gi|320159837|ref|YP_004173061.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] gi|319993690|dbj|BAJ62461.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila UNI-1] Length = 146 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 9/136 (6%) Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +++R DYG+++++ A + P + +AE I FL +I + L+++G + G Sbjct: 3 RVSRRIDYGVQLMIALAQTEAERPVPTAVLAEKLHIPLPFLHQIGRSLIQSGYIRATPGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 RGG+RL + + I++L +++A E + + + V + Sbjct: 63 RGGLRLKQSPENISLLQIIEALEGPMRIVPESNGNGM--------MTREVWAELQEKVVA 114 Query: 121 VLTQYSIECLVRNRSS 136 L + L + Sbjct: 115 ALASIRLSELAKKAPQ 130 >gi|239627234|ref|ZP_04670265.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517380|gb|EEQ57246.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 133 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY +R++ A+ + I QI + + F +KIL+ L KAG+V RG Sbjct: 1 MMITRESDYAVRMIR--ALKDGEQLTIGQICQKEQVPRQFAYKILKKLEKAGLVLIRRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG L + D +T+LDV++AT+E FF+ C C +C + L + Sbjct: 59 GGGCNLGQSLDVLTLLDVIRATDEEFFLNPCL-REGYRCEYADGSGHNCTVHCELARVQA 117 Query: 117 AFFDVLTQYSIECL 130 L ++ L Sbjct: 118 ILERELKHRTLAEL 131 >gi|157825855|ref|YP_001493575.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia akari str. Hartford] gi|157799813|gb|ABV75067.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia akari str. Hartford] Length = 128 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ A + P +++I+ IS +L +I L KA +V+ +RG +GG L + Sbjct: 2 AILEIATKSSAAPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYVLIGNLE 61 Query: 72 QITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 +I I D++ A E+F + C+ C P C + + D SI+ Sbjct: 62 EIKISDIMDAVNENFIMTTCYKKSVKTCVPDTVKCNSHKLWKGLGKHIRDYFENISIKD 120 >gi|86608330|ref|YP_477092.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556872|gb|ABD01829.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 146 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y + L+ A H + +I +IA I + +L ++L L + G+V + R Sbjct: 1 MELSCKSEYALLALLELAQHYSDGQVLQIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G +GG L R QI++LDV++A E + S + L + A A Sbjct: 61 GSKGGYFLARAPWQISLLDVIQAIEGEDLSRSRDLPSGDLTPERE---VLLKAWQDAQAA 117 Query: 118 FFDVLTQYSIECLVR 132 +L + +++ L Sbjct: 118 AVAILQKTTLQDLCD 132 >gi|220908247|ref|YP_002483558.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864858|gb|ACL45197.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7425] Length = 147 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 P + + IA I+ +L +IL L +AGIV + RG GG L R +IT+ DV Sbjct: 27 QPLKANAIAARQEIASRYLEQILSMLRQAGIVASYRGAAGGYTLARDPSEITVWDVFSCL 86 Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 E + + L + +++ A +VL Q +++ L+ R K+ Sbjct: 87 EGETINKQPAPDGPPNLTKE---ILQEIWQQSTTAAQNVLQQITLQDLLIRRKEYKQ 140 >gi|297620718|ref|YP_003708855.1| putative HTH-type transcriptional repressor [Waddlia chondrophila WSU 86-1044] gi|297376019|gb|ADI37849.1| putative HTH-type transcriptional repressor [Waddlia chondrophila WSU 86-1044] Length = 144 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 10/138 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ ++Y +R+++ A + + ++A+ +SE + KILQ L +AG+V+ +G Sbjct: 2 LSSTSEYALRIMVILAHQKENSFLKGKELAKETKVSEAYSAKILQLLNRAGLVQAQKGLG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118 GG L R AD+I++ D++ A + EC A HK CP L L F Sbjct: 62 GGYLLSRSADEISLFDIINAVDPFTRFDECPLGIAEHKTLCP------LHRKLDNVYADF 115 Query: 119 FDVLTQYSIECLVRNRSS 136 + S+ +NR Sbjct: 116 QKIFKDCSLSTFSKNREQ 133 >gi|56964902|ref|YP_176633.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911145|dbj|BAD65672.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 169 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + + +L+ A + I+ +S +L KI++ LV + ++ +V G Sbjct: 1 MKIKSGVEQAVCILVILATQTGQQHVKSDTISARLRVSPSYLKKIMRKLVISKLITSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 GG L + + IT+LD+++A E + + +I GS L ++ +A Sbjct: 61 NSGGFALAKSPEAITMLDILEAIEGTSPFFQTEGLIQYVFPEIPAAEAGSKRLEAIFLEA 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140 + L + ++ + + +KI Sbjct: 121 QEQYMASLAKTTLAEAIHQTLNREKI 146 >gi|282897323|ref|ZP_06305325.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] gi|281197975|gb|EFA72869.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii D9] Length = 160 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 I+ IA I E +L +IL L +AGIV++ RG +GG L R +I++L++V E Sbjct: 44 LTINDIAAKQPIPERYLEQILTQLRRAGIVQSQRGSKGGFLLVREPWEISLLEIVTLIEG 103 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135 + + + +A A +VL +Y+++ L + R Sbjct: 104 ERN-----EKRNAKVLTIEKSLVWEIWERANIASVEVLGRYTLQDLCQERE 149 >gi|160937566|ref|ZP_02084927.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC BAA-613] gi|158439635|gb|EDP17385.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC BAA-613] Length = 135 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ +DY IR++ A+ + + QI + + + F +KIL+ L ++G+V RG Sbjct: 1 MMITRESDYAIRIIR--ALKDGELLPLEQICQRELVPKQFAYKILKKLERSGLVSIRRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117 GG L R +T+LD++KA +E FF+ C S + C S C + L + Sbjct: 59 GGGCILNRSLADLTLLDIIKAADEEFFLNPCLDS-QYQCGYAASFDGCKVHCELARVQRV 117 Query: 118 FFDVLTQYSIECL 130 + L + S++ L Sbjct: 118 LEEELKRTSLDRL 130 >gi|256421070|ref|YP_003121723.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035978|gb|ACU59522.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis DSM 2588] Length = 142 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y L++ A + D P IS+IA+ IS FL IL L AGI+ + +G+ Sbjct: 2 LSKKTQYAFHALIHLAENADKGPILISEIAQEKSISIKFLENILLELKNAGILGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + +++ + + + C + +C CGL V+ K +A Sbjct: 62 GGYYLLKTPKEIPLAKIIRLLDGAIALLPCVSLNYYEKCENCRDEAVCGLNDVMGKVRDA 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 +L +++ ++ SI Sbjct: 122 TLKILETKTLKDILTRNVSI 141 >gi|292654129|ref|YP_003534027.1| Uncharacterized protein family UPF0074 superfamily [Haloferax volcanii DS2] gi|291369713|gb|ADE01941.1| Uncharacterized protein family UPF0074 superfamily [Haloferax volcanii DS2] Length = 147 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R VL A+ +D ++A + + + + ++L L +A +V++ RG Sbjct: 1 MSNSSRFVVATHVLTNLAVRSDERLSSDRLAWSVNTNPVVIRQLLCSLREADLVDSKRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCG--LTSVLRKALN 116 GG L D IT+ D+ +A E++ CF +C + L +L A+ Sbjct: 61 TGGFTLAHEPDAITLRDIYEAVEDAEPF--CFHTNEPNDECTVGEHIQPVLGELLEPAIQ 118 Query: 117 AFFDVLTQYSIECL 130 A D L ++ + Sbjct: 119 AMLDELDSVTVADV 132 >gi|157165239|ref|YP_001467135.1| Rrf2 family protein (putative transcriptional regulator) [Campylobacter concisus 13826] gi|112801375|gb|EAT98719.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter concisus 13826] Length = 134 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+ + P + I+ IS+ FL KILQ L K G++++ +G Sbjct: 1 MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKDGVLKSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 GG L + ++I +++ E+ V EC +S + CP SC + S+ Sbjct: 60 NGGFALNGEPENLSIKKIIECAEKRELSVFECSSS-ALGCPSNKASSCQIWSMFSGLQGK 118 Query: 118 FFDVLTQYSIECLVRN 133 ++L + +V+ Sbjct: 119 IDEMLDAIKLSDIVKK 134 >gi|318041035|ref|ZP_07972991.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp. CB0101] Length = 142 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 24/146 (16%) Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + +T YG+ LM A + ++S+IA I E +L +++ L ++GI+ ++R Sbjct: 1 MGFSAKTTYGLLALMELADVAGSGERLQVSEIAARQAIPERYLEQMMTSLRRSGILRSIR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG +L + ADQI + +V+ E + + R+ +NA Sbjct: 61 GARGGYQLAKAADQILLSEVILCLEGEPNTVDPSSGSPE--------------RQVINAL 106 Query: 119 FDVLTQ--------YSIECLVRNRSS 136 D L + ++ L +R + Sbjct: 107 ADELRRQRTTRLAATTLADLQHDRDA 132 >gi|111225126|ref|YP_715920.1| RRF2 family protein [Frankia alni ACN14a] gi|111152658|emb|CAJ64399.1| RRF2 family protein [Frankia alni ACN14a] Length = 135 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A + + +A A + FL IL L +AG+V++ RG GG +L RPADQIT+ Sbjct: 1 MAASDGQLVKGESLALAQDLPLRFLENILTDLRRAGLVQSRRGADGGYQLGRPADQITVA 60 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 V++ T+ + C + L V VL ++ + R Sbjct: 61 TVIRVTDGPLASVR-GRRPEDACYEGAAKNLQDVWIAVRVNLRRVLENVTLAEVAGGR 117 >gi|237744648|ref|ZP_04575129.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229431877|gb|EEO42089.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 140 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 61 AKGGYILTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDELL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 121 DDFDKINFYDLVENNTGLE 139 >gi|322389974|ref|ZP_08063513.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321143287|gb|EFX38726.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 149 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ + +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG L + +D+I++LD+ +A E + + + CP+ + + +VL Sbjct: 61 -TGGAELAKASDEISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A ++Q +++ +V + Sbjct: 118 DIQTAMEKEMSQTTLKDVVED 138 >gi|85709197|ref|ZP_01040263.1| Rrf2 family protein [Erythrobacter sp. NAP1] gi|85690731|gb|EAQ30734.1| Rrf2 family protein [Erythrobacter sp. NAP1] Length = 162 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K ++ V A+ + + +AE + +L K +Q L +AGI ++VRG Sbjct: 1 MQLAKGIEWTTHVCTIIALLPEGKGLSVDALAEFFELPAAYLSKQMQALRRAGIAQSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113 + GG RL + D IT+LD+V A E C C L S C + + Sbjct: 61 KGGGYRLAQSPDAITLLDIVIAIEGPSPAFRCTEIRQNGPCGLERSECKRPCEIAAAFAA 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A+ L ++ +++ Sbjct: 121 AEQAYRSALESKTLASIMQE 140 >gi|319782786|ref|YP_004142262.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168674|gb|ADV12212.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 167 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + I A + + + +AEA +S +L K L L A ++E+V G Sbjct: 1 MKLGEGVEAAIHCAATLASVEGNSTMPGAALAEAFGLSPSYLLKHLNMLSAARVLESVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------IDCPLVGSCGLTSVLRK 113 GG RL RPA++IT+LD+V A E C + V CG+ + + K Sbjct: 61 PAGGYRLARPAERITLLDIVLAVEGREPAFRCGEIRQRGPVKLDASAYVKPCGINAAMLK 120 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A+ L + + +V Sbjct: 121 AERAYRAALAETKLSDIVA 139 >gi|300866831|ref|ZP_07111509.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300335181|emb|CBN56669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 146 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + P +I IA I + +L ++L L + G++ + RG +GG L R +IT+L+++ Sbjct: 23 NEGEPLQIRSIASQQNIPDRYLEQLLATLRRGGVIRSQRGAKGGYLLAREPWKITLLEIL 82 Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 E + + + + S + V ++A VL +Y+++ L ++ ++ Sbjct: 83 NCLEGADMD---RSENNSTTKTLESAVVFEVWQEAREIANSVLQKYTLQDLTERLNARRQ 139 Query: 140 I 140 + Sbjct: 140 L 140 >gi|226312193|ref|YP_002772087.1| hypothetical protein BBR47_26060 [Brevibacillus brevis NBRC 100599] gi|226095141|dbj|BAH43583.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 146 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L +I ++ IA + + + + ++L L KAG+V VR Sbjct: 1 MKISSRFSIAVHILSLLSIDSNSHCTSEWIAGSVNTNPVVIRRVLGLLKKAGLVN-VRAG 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + DQIT+L++ +A + E + DCP+ + L +L +A + Sbjct: 60 AGGASLAKELDQITLLEIYRAVDVVEEGQLFHIHEQPNPDCPVGANIQFVLELILTRAQH 119 Query: 117 AFFDVLTQYSIECLVRN 133 A ++L + LV N Sbjct: 120 AMEEILGGVKMSELVDN 136 >gi|163783457|ref|ZP_02178448.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1] gi|159881221|gb|EDP74734.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1] Length = 144 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H D + +IA+A I + FL KIL L + ++ +V+G +GG L +++T+ DVV Sbjct: 20 HRDRLVKADEIAKAQNIPKPFLSKILHELARRDVLHSVKGPKGGFALKTDPEKLTMWDVV 79 Query: 80 KATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAFFDVLTQYSIECLVR-NRSS 136 E + C C + C + K D L +I LV Sbjct: 80 SLMGEDYRFQACVLMPD-KCEVYETNPCVVHHRWEKLKRKIVDFLKNTTIADLVSVEERH 138 Query: 137 IKKIFN 142 + + + Sbjct: 139 LADLLS 144 >gi|198284817|ref|YP_002221138.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667768|ref|YP_002427503.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249338|gb|ACH84931.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519981|gb|ACK80567.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 146 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K ++Y +R L+Y A P I++ S + K+L+ L K GI+ +V+G Sbjct: 1 MMLSKASEYALRSLIYLAAQPSGRPVLSRDISDYIGGSAPCVTKVLRCLAKRGILYSVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118 + GG L A+ + I+DV++ TE C H DC + C L + Sbjct: 61 KGGGYMLRPGAESLNIIDVIEITEGRPLEIRCILGH--DCVRNTTLCPLHPQWEAIKSRE 118 Query: 119 FDVLTQYSI 127 L ++ Sbjct: 119 MGFLRGQTV 127 >gi|62262806|gb|AAX78104.1| unknown protein [synthetic construct] Length = 171 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A ++ P ++IAE ++ + K+L L A IV + RG Sbjct: 29 KISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGIE 88 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + + Sbjct: 89 GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 146 Query: 122 LTQYSIECLVRNRSS 136 L++ SI +V N+ Sbjct: 147 LSKTSIYDIVNNKDK 161 >gi|168703183|ref|ZP_02735460.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata obscuriglobus UQM 2246] Length = 136 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 12/138 (8%) Query: 14 LMYCAIHND--YPNRISQIAEACCIS-ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ A H P R++ IA IS FL +IL L K G+V + RG GG + R Sbjct: 1 MLELAAHYGDPKPVRLTDIANKHGISSPRFLVQILIQLNKDGLVTSTRGAAGGYHIARAP 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD-------VLT 123 IT+ DV+ A E + + K PL + L V + A D +L Sbjct: 61 SAITLADVIAAVEGTEQAGTRTKARKPTSPLAAA--LDDVWDRVRTAHEDFLLKQAAILK 118 Query: 124 QYSIECLVRNRSSIKKIF 141 ++ LV + ++ + Sbjct: 119 STTLAQLVDSGEPLQYVI 136 >gi|256424752|ref|YP_003125405.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039660|gb|ACU63204.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis DSM 2588] Length = 144 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR +++ A + I IA+ E F+ KILQ L + G+V++++G Sbjct: 2 FSKTCEYAIRAMIFIAQKSKDGSKIGIRDIAKGIDSPEYFIAKILQELGRKGVVQSMKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L A + ++ +VKA + + C K C C L K + Sbjct: 62 TGGFYLDNSARKTSLATIVKAVDGDNIFSGCGLGLK-QCSDKHPCPLHHEFTKIRKDITN 120 Query: 121 VLTQYSIECL 130 +L + + L Sbjct: 121 MLNKTRVGDL 130 >gi|260430264|ref|ZP_05784238.1| putative transcriptional regulator [Citreicella sp. SE45] gi|260418736|gb|EEX11992.1| putative transcriptional regulator [Citreicella sp. SE45] Length = 126 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 57/106 (53%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + +AE +S L KI+Q L +AG+V+T RG GG L R +I + DVV EE Sbjct: 14 STADLAEEFQLSRNHLIKIIQKLSRAGLVQTRRGGGGGATLARHPKEIRLGDVVLVLEEG 73 Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 + ECF + DC + G C LT+ LR A AF + L + ++ + Sbjct: 74 QALVECFQPNGGDCTIDGCCRLTTRLRVAEMAFIENLNRSTVADVA 119 >gi|262067675|ref|ZP_06027287.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] gi|291378399|gb|EFE85917.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] Length = 140 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I +C + L+K N Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSATICSTRGANCSIRLALKKIQNELL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 121 DDFDKINFHDLVENNTGLQ 139 >gi|118497442|ref|YP_898492.1| transcriptional regulator [Francisella tularensis subsp. novicida U112] gi|195536133|ref|ZP_03079140.1| transcriptional regulator family protein [Francisella tularensis subsp. novicida FTE] gi|208779236|ref|ZP_03246582.1| transcriptional regulator family protein [Francisella novicida FTG] gi|254372803|ref|ZP_04988292.1| transcriptional regulator [Francisella tularensis subsp. novicida GA99-3549] gi|254374263|ref|ZP_04989745.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|118423348|gb|ABK89738.1| transcriptional regulator [Francisella novicida U112] gi|151570530|gb|EDN36184.1| transcriptional regulator [Francisella novicida GA99-3549] gi|151571983|gb|EDN37637.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|194372610|gb|EDX27321.1| transcriptional regulator family protein [Francisella tularensis subsp. novicida FTE] gi|208745036|gb|EDZ91334.1| transcriptional regulator family protein [Francisella novicida FTG] Length = 136 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG Sbjct: 3 KISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGIE 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + + Sbjct: 63 GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120 Query: 122 LTQYSIECLVRNRSS 136 L++ SI +V N+ Sbjct: 121 LSKTSIYDIVNNKDK 135 >gi|328676938|gb|AEB27808.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida Fx1] Length = 136 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG Sbjct: 3 KISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSRRGIE 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + + Sbjct: 63 GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120 Query: 122 LTQYSIECLVRNRSS 136 L++ SI +V N+ Sbjct: 121 LSKTSIYDIVNNKDK 135 >gi|257459683|ref|ZP_05624792.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] gi|257443108|gb|EEV18242.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis RM3268] Length = 137 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+ ++ A ++ P I +IAE +S+ +L +IL L +V +++G+ Sbjct: 4 LSTKGVYGLAAILQIAKASEVAPISIKEIAERTGVSKNYLEQILNTLRNEKLVCSIKGKN 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97 GG L R A +I+ ++ A E+ + S Sbjct: 64 GGYHLARDASEISFGEIFTALEKDLRMTSIQMSDPG 99 >gi|295676234|ref|YP_003604758.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] gi|295436077|gb|ADG15247.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1002] Length = 149 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPVLIRRLLAMLSEAGLTTSQMGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +QIT+LDV +A E++ A C + + L+ ++ +A A Sbjct: 61 GGGALLARRPEQITLLDVYRAVEDAQLFALHREEPNPACMVGRNIQSVLSGIVDEAQQAM 120 Query: 119 FDVLTQYSIEC 129 L ++ Sbjct: 121 EAALAARTLAD 131 >gi|311029207|ref|ZP_07707297.1| hypothetical protein Bm3-1_01416 [Bacillus sp. m3-13] Length = 138 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+ A D+ +IA+ + + KI+ L G V T G GG L R Sbjct: 8 AVHSLVLLAHLPDHMASSQKIADNVSTNPARIRKIMSCLRNHGFVRTKEGIGGGYILQRD 67 Query: 70 ADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFFDVLTQYS 126 D+IT+ + ++ + C + +C + + L V + F L + S Sbjct: 68 PDEITLGQIYRSVSGATIKPNWCSGDPEEECVVASNIQLVMDEVFEETDQYFSAYLDRIS 127 Query: 127 IECLVRN 133 I +++ Sbjct: 128 IASILKK 134 >gi|304311762|ref|YP_003811360.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] gi|301797495|emb|CBL45715.1| Predicted transcriptional regulator [gamma proteobacterium HdN1] Length = 156 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 1/129 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + K TDY + ++ A R+ +A+ + + + K++ LV A +V + RG R Sbjct: 3 RIGKLTDYALILMNCMATRPAQLWRMELLADTTRLPQPTVRKLMGQLVAANLVRSERGAR 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R + I++ +++ A E + EC C +G+C + + + Sbjct: 63 GGYQLSRLPNLISMAEIIIAIEGPIAITECC-EVVPSCERLGACDMEGRWPAINDLILQL 121 Query: 122 LTQYSIECL 130 L ++ + Sbjct: 122 LRVVTLSDI 130 >gi|39933740|ref|NP_946016.1| putative transcriptional regulator BadM [Rhodopseudomonas palustris CGA009] gi|6136594|sp|O07465|BADM_RHOPA RecName: Full=Putative HTH-type transcriptional regulator BadM gi|2190585|gb|AAC13361.1| unknown [Rhodopseudomonas palustris] gi|39647587|emb|CAE26107.1| putative transcriptional regulator, badM [Rhodopseudomonas palustris CGA009] Length = 156 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 3 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R ++T+LD++ E++ + E + S L VLR Sbjct: 63 GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDH-----EESRALHKVLRDIDEIAM 117 Query: 120 DVLTQYSIECLVR 132 L SI L++ Sbjct: 118 TTLRSVSITSLLK 130 >gi|316935429|ref|YP_004110411.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603143|gb|ADU45678.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris DX-1] Length = 154 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 1 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRTLVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R ++T+LD++ E++ + E + S L VLR Sbjct: 61 GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDEH-----EESRALHKVLRDIDEIAM 115 Query: 120 DVLTQYSIECLVR 132 L SI L++ Sbjct: 116 TTLRSVSITSLLK 128 >gi|56708063|ref|YP_169959.1| hypothetical protein FTT_0970 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670534|ref|YP_667091.1| hypothetical protein FTF0970 [Francisella tularensis subsp. tularensis FSC198] gi|134301877|ref|YP_001121846.1| rrf2 family transcriptional regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|187931697|ref|YP_001891681.1| FeS assembly SUF system regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|224457151|ref|ZP_03665624.1| FeS assembly SUF system regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254370550|ref|ZP_04986555.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874866|ref|ZP_05247576.1| cysteine desulfurase activator complex subunit sufB [Francisella tularensis subsp. tularensis MA00-2987] gi|56604555|emb|CAG45603.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320867|emb|CAL08986.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|134049654|gb|ABO46725.1| transcriptional regulator, rrf2 family [Francisella tularensis subsp. tularensis WY96-3418] gi|151568793|gb|EDN34447.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|187712606|gb|ACD30903.1| FeS assembly SUF system regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|254840865|gb|EET19301.1| cysteine desulfurase activator complex subunit sufB [Francisella tularensis subsp. tularensis MA00-2987] gi|282159259|gb|ADA78650.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. tularensis NE061598] Length = 136 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A ++ P ++IAE ++ + K+L L A IV + RG Sbjct: 3 KISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGIE 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + IT+LD+VK E+ + EC K C L G+C ++ + + + Sbjct: 63 GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120 Query: 122 LTQYSIECLVRNRSS 136 L++ SI +V N+ Sbjct: 121 LSKTSIYDIVNNKDK 135 >gi|323341526|ref|ZP_08081765.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC 25644] gi|323091047|gb|EFZ33680.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC 25644] Length = 186 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK + ++ A N P I S+ +L KI++ LV G++ + G Sbjct: 9 MQLTKGFEQAACIMALLATQNRGIPLSSHVIHTRVSSSQTYLKKIMRKLVVGGLITSASG 68 Query: 60 RRGGVRLCRPADQITILDVVKATEESFF------VAECFASHKIDCPLVGSCGLTSVLRK 113 GG L R + IT+L +V A E + + S G+ + + Sbjct: 69 NSGGFSLAREPEDITLLQIVSAVEGEIHTYPNNGLLDLVFSDFKPIATEGNSAINAAFDA 128 Query: 114 ALNAFFDVLTQYSIECLV 131 A + L + +I L+ Sbjct: 129 ADQLWRQALDKVTIYDLL 146 >gi|148261260|ref|YP_001235387.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402941|gb|ABQ31468.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum JF-5] Length = 97 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L++ TDY + VL+ A IA I E + K+L+ L ++G+V + RG Sbjct: 1 MRLSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98 GG RL RP I I DV+ A + + C Sbjct: 60 HGGYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGS 97 >gi|88801410|ref|ZP_01116938.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter irgensii 23-P] gi|88782068|gb|EAR13245.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter irgensii 23-P] Length = 137 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L + + P I+ I+++ IS FL IL L K GI+ + +G+ Sbjct: 2 LSKKTKYGIKALTFLGKQENRLPVSIATISKSENISLKFLESILLTLRKNGILGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + +I + +++ E + C F DCP +C + ++ + Sbjct: 62 GGYYLLKEPSEIPMASIMRILEGPISMVPCVSLNFYEKCDDCPDENACSVHRLMTLVRDN 121 Query: 118 FFDVLTQYSIECLV 131 + ++ L Sbjct: 122 TLQIFKNTTLADLC 135 >gi|19704228|ref|NP_603790.1| hypothetical protein FN0893 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328864|ref|ZP_06871375.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714456|gb|AAL95089.1| Hypothetical protein FN0893 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153985|gb|EFG94792.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 140 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y ++ D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIIYYLTLNRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDDLL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV N +S++ Sbjct: 121 DDFDKINFYDLVENNASLQ 139 >gi|254460966|ref|ZP_05074382.1| transcriptional regulator, putative [Rhodobacterales bacterium HTCC2083] gi|206677555|gb|EDZ42042.1| transcriptional regulator, putative [Rhodobacteraceae bacterium HTCC2083] Length = 110 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 1/108 (0%) Query: 34 CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93 ISE +L KI L K G V + GR GG+ L I+I V++A +++ VAECF Sbjct: 2 YGISENYLVKIATQLSKGGFVVSESGRGGGLTLAVLVVDISIGAVLRALKKNEPVAECFG 61 Query: 94 SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 S C ++ +C L L +A AFF L YS+ + + + +K + Sbjct: 62 S-NTSCAILPTCSLRGPLLEAQEAFFAALVGYSLADVAKAKGYLKDLI 108 >gi|192289160|ref|YP_001989765.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282909|gb|ACE99289.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris TIE-1] Length = 156 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 3 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG R ++T+LD++ E++ + E + S L VLR Sbjct: 63 GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDH-----EESRALHKVLRDIDEIAM 117 Query: 120 DVLTQYSIECLVR 132 L SI L++ Sbjct: 118 TTLRSVSITSLLK 130 >gi|116618835|ref|YP_819206.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097682|gb|ABJ62833.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 139 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ +QIA++ + + + +I+ L G + + GR Sbjct: 1 MKYSTKLSDAIHILTYIVINQGTDLSSTQIAKSVNSNPVVIRRIMSQLKNDGCLLSSNGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118 +L RPAD I++LD+ +A EE + +C + T + A Sbjct: 61 A-DPKLARPADTISLLDIYRAVEEDTSFLKIDTKTNQNCNVGSHIQTTLDKYYNQVQEAA 119 Query: 119 FDVLTQYSIECLVRN 133 + + + +++ Sbjct: 120 EKEMNKIKLADIIKE 134 >gi|34581609|ref|ZP_00143089.1| hypothetical protein [Rickettsia sibirica 246] gi|28262994|gb|EAA26498.1| unknown [Rickettsia sibirica 246] Length = 128 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Query: 13 VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ A + P +++++ IS +L +I L KA +V+ +RG +GG L + Sbjct: 2 AILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYILIGNLE 61 Query: 72 QITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 +I I D++ A E+F + C+ C P C + + D SI+ Sbjct: 62 EIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHIRDYFENISIKDA 121 Query: 131 VRNRSSI 137 + + +I Sbjct: 122 LNSNLNI 128 >gi|13471616|ref|NP_103182.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022358|dbj|BAB48968.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 174 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + I A + + + +AE +S +L K L L A I+E+V G Sbjct: 1 MKLGEGVEAAIHCTATLASVEGNSTMPGAALAECFGLSASYLLKHLNMLTAASILESVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRK 113 GG RL R A++IT+LD+V A E C + + + CG+ + + K Sbjct: 61 PAGGYRLARAAERITLLDIVLAIEGREPAFRCGEIRRNGPVKIDASAYVKPCGINAAMLK 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136 A A+ L + + +V + ++ Sbjct: 121 AERAYRAALAEVKLSDIVADYAA 143 >gi|329769741|ref|ZP_08261142.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325] gi|328838103|gb|EGF87721.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325] Length = 138 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L++ + D +A + + + KI+ L K G++E+ +G+ G + Sbjct: 3 TKFSVALHILIFIS-ETDKIVSSELLANSVNTNSSHIRKIIALLKKGGLIESQQGKTG-M 60 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122 L + IT+ DV + + + +CP+ + L V +A +AF++ L Sbjct: 61 ALAKSTKDITLADVYQIVYPNKHLVNIHEGANKECPVGNNIENLLQPVFNEAQDAFYNKL 120 Query: 123 TQYSIECLVRN 133 ++E L++ Sbjct: 121 ASKTLEQLIKE 131 >gi|114798072|ref|YP_758963.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444] gi|114738246|gb|ABI76371.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444] Length = 163 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + ++ + A+ + + IA + +L K +Q L +AGIV + RG Sbjct: 1 MRMGEGVEWAAHACLLLSALPDGAGLPAAAIAAFHDVPPAYLAKHMQALARAGIVTSARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL R ++I +L + A + C + C +CG+ + Sbjct: 61 ASGGYRLARAPEEINLLQIADAVDGGEPAFRCTEIRQRGPCAAKAEECMKACGIAAAFWA 120 Query: 114 ALNAFFDVLTQYSIEC----LVRNRSS 136 A + L + LVR + S Sbjct: 121 AERIYRQHLEGVRLADIRSALVRKQDS 147 >gi|311745462|ref|ZP_07719247.1| Rrf2 family protein [Algoriphagus sp. PR1] gi|126578014|gb|EAZ82234.1| Rrf2 family protein [Algoriphagus sp. PR1] Length = 138 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 5/135 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T Y + L Y H D I +IAE IS FL IL L KAG++ + +G+ Sbjct: 2 LSKKTKYALHALTYLGKHKDEKTVLIHEIAEEHGISHKFLENILLELKKAGLLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117 GG L + I + V++ + + C + +C CG+ VL K + Sbjct: 62 GGYYLIKEPKDIPLSKVIRLLDGPIALLPCVSLNYYEPCDECKNEAQCGINKVLIKVRDE 121 Query: 118 FFDVLTQYSIECLVR 132 +L ++E +++ Sbjct: 122 TLKILENKTLEDILK 136 >gi|83309299|ref|YP_419563.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944140|dbj|BAE49004.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 151 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +K+ + I ++ A H P + +I I +L + LQ LV+AGI+ VRG RG Sbjct: 5 SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRAGILVGVRGPRG 64 Query: 63 GVRLCRPADQITILD---VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 G RL R +I++ + VV+A E + + + +G+ + + Sbjct: 65 GYRLARERRRISVGEVVRVVRALETAEDPYQ-----DMPASQLGAQVIRPMWGDLTEEIM 119 Query: 120 DVLTQYSIECLV 131 L SI+ L Sbjct: 120 SRLDAISIDELC 131 >gi|110597184|ref|ZP_01385473.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] gi|110341375|gb|EAT59840.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM 13031] Length = 140 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TDY IR L+ A IA I FL ++LQ +++ ++ + G Sbjct: 1 MKVLTKNTDYAIRALLALAAEKGSYLSAKAIASGQDIPYQFLRRLLQEMIRHNLIVSKEG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 RGG L + D IT+ +++ + V+EC +I C C L + + Sbjct: 61 ARGGFMLEKDPDAITVTQLIEIFQGKVQVSECMFRKQI-CGNRSRCVLRHEIMRIEQVVQ 119 Query: 120 DVLTQYSIECLVRN 133 + +I L+R+ Sbjct: 120 SEFEKVTIGKLLRD 133 >gi|115522626|ref|YP_779537.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516573|gb|ABJ04557.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisA53] Length = 153 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A H D IAE IS L K+L+ LV+A ++E+VRG Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYDISLNHLAKVLRTLVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG ++T+LD++ E++ E AS K + S L VL + Sbjct: 61 GGGYTFSGNPKRVTLLDIIALFEDTSPDPEQAASDKHE----ESRALHKVLHDIDDIAMT 116 Query: 121 VLTQYSIECLVR 132 L SI L++ Sbjct: 117 TLRSVSITSLLK 128 >gi|254467026|ref|ZP_05080437.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales bacterium Y4I] gi|206687934|gb|EDZ48416.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales bacterium Y4I] Length = 142 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ + I++ IS +L ++ L ++G+VE+VRG GG RL +PA Sbjct: 3 ALADIALQTQGDLVPLGDISKRQDISLPYLEQLFVKLRRSGLVESVRGPGGGYRLAKPAS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 +I I+DV+ A +E+ A + LT+ L + L+A + L Q + + Sbjct: 63 EIRIVDVLSAVDETVDAMHKGAGASGALSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122 Query: 131 VRN 133 ++N Sbjct: 123 IKN 125 >gi|228990968|ref|ZP_04150931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] gi|228997055|ref|ZP_04156686.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|229004710|ref|ZP_04162447.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228756598|gb|EEM05906.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4] gi|228762680|gb|EEM11596.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17] gi|228768748|gb|EEM17348.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM 12442] Length = 144 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ IAE+ + + + KI+ L +A V RG Sbjct: 2 MKISSRFSIAVHILSILKNNSSSICTSEFIAESVNTNPVVIRKIMSDLKRAEFVYVNRGP 61 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + ++IT+LDV A E+ + DCP+ + L VL +A + Sbjct: 62 -GGAELLKDLNEITLLDVYHAVNVVEADKLFHIHEQPNPDCPIGANIQAVLEVVLVQAQS 120 Query: 117 AFFDVLTQYSIECL 130 A +VL ++E L Sbjct: 121 AMEEVLKNITMENL 134 >gi|189499610|ref|YP_001959080.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] gi|189495051|gb|ACE03599.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium phaeobacteroides BS1] Length = 136 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 14/142 (9%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+ ++ A + +I QI E I + +L +I LVK +V++VRG + Sbjct: 4 LSAKAHYGLAAMLDLADNFGKQRLQIRQIVEKRGIPKNYLEQIFNRLVKNALVKSVRGNK 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R +T+ +++A E + + H + + + Sbjct: 64 GGYELARSPSSLTVFSILEALEGKLEIV---SDHDTK-------AMRQTFGNLEDLVMEY 113 Query: 122 LTQYSIECLV--RNRSSIKKIF 141 ++E L+ R S K+I+ Sbjct: 114 F-SMTLEELIVQEKRFSQKQIY 134 >gi|254476324|ref|ZP_05089710.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] gi|214030567|gb|EEB71402.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] Length = 142 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ + + I++ IS +L ++ L +AG+V++VRG GG RL RPA Sbjct: 3 ALADIALQPEGHLVVLGDISKRQDISLPYLEQLFVKLRRAGLVDSVRGPGGGYRLARPAS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 +I ++DV+ A +E+ A + LT+ L + L+A + L Q + + Sbjct: 63 EIRVVDVLGAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122 Query: 131 VRN 133 ++N Sbjct: 123 IKN 125 >gi|221324215|ref|ZP_03605509.1| hypothetical protein BsubsS_15007 [Bacillus subtilis subsp. subtilis str. SMY] Length = 97 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 14 LMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ A H + P + IA+ +SE +L +++ PL AG+V+++RG GG L D Sbjct: 1 MIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 60 Query: 73 ITILDVVKATEESFFVAEC 91 IT D+++ E + +C Sbjct: 61 ITAGDIIRVLEGPISLLKC 79 >gi|229542592|ref|ZP_04431652.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] gi|229327012|gb|EEN92687.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans 36D1] Length = 145 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R GI +L ++ D + +AE+ + + + KI+ L ++G++E G+ Sbjct: 1 MSISSRFAVGIHILALIEMNKDGVSSSEFLAESVNTNPVVIRKIMGMLKRSGLIEVHPGK 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G RL + IT+LDV KA + + + CP+ + + + + Sbjct: 61 AG-ARLAKALSDITLLDVYKAVNVVQDKALFSIHRNPNPKCPVGRNIQNTIEPIFEASQM 119 Query: 117 AFFDVLTQYSIECLVRN 133 A VL Q ++E +V++ Sbjct: 120 AMEKVLEQVTLEDVVKD 136 >gi|34762328|ref|ZP_00143331.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741835|ref|ZP_04572316.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845171|ref|ZP_05550629.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2] gi|294785526|ref|ZP_06750814.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] gi|27887982|gb|EAA25046.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429483|gb|EEO39695.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256718730|gb|EEU32285.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2] gi|294487240|gb|EFG34602.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] Length = 140 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIIYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSTTICSTRGADCTIRHALKKIQDELL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV N + ++ Sbjct: 121 DDFDKINFYDLVENSTGLQ 139 >gi|294497330|ref|YP_003561030.1| Rrf2 family transcriptional regulator [Bacillus megaterium QM B1551] gi|294347267|gb|ADE67596.1| transcriptional regulator, Rrf2 family [Bacillus megaterium QM B1551] Length = 143 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + + +P+ IA + + + + +++ L KAG+V G Sbjct: 1 MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLVGVKAGA 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + ++IT+LDV +A E + + + ++CP+ + L +L+++ + Sbjct: 61 GGAYLL-KDLEEITLLDVYRAVAAVEEGELFQMHENPNVECPVGANIQSVLELILKRSQD 119 Query: 117 AFFDVLTQYSIECLVRN 133 A VL +++ LV + Sbjct: 120 AMEQVLADVTMKELVTD 136 >gi|225570988|ref|ZP_03780011.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM 15053] gi|225160450|gb|EEG73069.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM 15053] Length = 129 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 2/130 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY IR+L A+ + + + I + I E F +KI++ L KAGIVE RG Sbjct: 1 MLLTRENDYAIRMLR--AMRDGQKHTMKDICQEEEIPEAFAYKIVRKLQKAGIVEVERGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R+ R ++T+ DVV A +E + C +C + L + Sbjct: 59 AGGCRMGRSLTELTLYDVVAAVDEEPVIMPCLRKSCSRNTGGNACKVHMELAQIQRVLMR 118 Query: 121 VLTQYSIECL 130 L ++ + Sbjct: 119 ELKARTLSEV 128 >gi|126641870|ref|YP_001084854.1| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978] gi|213157474|ref|YP_002319519.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|215483319|ref|YP_002325530.1| Transcriptional regulator family protein [Acinetobacter baumannii AB307-0294] gi|239504201|ref|ZP_04663511.1| putative transcriptional regulator [Acinetobacter baumannii AB900] gi|213056634|gb|ACJ41536.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter baumannii AB0057] gi|213986810|gb|ACJ57109.1| Transcriptional regulator family protein [Acinetobacter baumannii AB307-0294] Length = 141 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91 + KI L KAG+V G RGG L R A +I+ LD+V A E + EC Sbjct: 1 MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60 Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 F + D G C + +V+ +A A D L +++ + Sbjct: 61 FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102 >gi|242372556|ref|ZP_04818130.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349773|gb|EES41374.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 142 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L I + + IA + + + + +++ L +AG +ET +G Sbjct: 1 MKISSRFTVAVHILSLVHIERNQTLTSAYIAGSVNTNSVVIRRLISKLKQAGFLETHQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG++L +P IT+LDV +A E E + + I+C + + L VL +A + Sbjct: 60 SGGIQLLKPLTDITLLDVYRAVEVVEEGELFQMHEDTNINCVVGANIQSVLEIVLLRAQD 119 Query: 117 AFFDVLTQYSIECLV 131 A VL +++ +V Sbjct: 120 AMETVLANVTMDDIV 134 >gi|328543025|ref|YP_004303134.1| HTH-type transcriptional regulator rrf2-like protein [polymorphum gilvum SL003B-26A1] gi|326412771|gb|ADZ69834.1| Putative HTH-type transcriptional regulator rrf2-like protein [Polymorphum gilvum SL003B-26A1] Length = 142 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 4/119 (3%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 RI ++AE + FL IL L +AG++ + RGR+GG L + ++I ++++ + Sbjct: 14 LRIEEVAELSGAPKRFLEHILLDLKRAGLIGSRRGRKGGYELIKEPRHVSIAEILRLIDG 73 Query: 85 SFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 C + DC SC + +V +A+ ++ ++ L + +++ Sbjct: 74 PIAPLPCLSRRAYRPCEDCKDEKSCRVRAVFGGFYSAYILMIESLTLADLQQESQPLER 132 >gi|290968839|ref|ZP_06560376.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781135|gb|EFD93726.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 144 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY IR+L A+ + I +I++ I F +KI + L AG +E +RG Sbjct: 1 MIITRETDYAIRILR--ALEGKDVSSIREISDTEYIPLQFAYKIAKKLDHAGCIEIIRGP 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNA 117 GG RL + +T+ ++++ T+ V C + C + C + + L + + Sbjct: 59 HGGCRLVKDLHAVTLFEIIQITDRENMVTSCM-NEDFYCMYREVNEECIMHTSLCQVQSH 117 Query: 118 FFDVLTQYSIECLV 131 L +I L+ Sbjct: 118 ITKYLKTLTIHDLI 131 >gi|295702703|ref|YP_003595778.1| Rrf2 family transcriptional regulator [Bacillus megaterium DSM 319] gi|294800362|gb|ADF37428.1| transcriptional regulator, Rrf2 family [Bacillus megaterium DSM 319] Length = 143 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + + +P+ IA + + + + +++ L KAG+V G Sbjct: 1 MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLVGVKAGA 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + ++IT+LDV +A E + + + ++CP+ + L +L+++ + Sbjct: 61 GGAYLL-KDLEEITLLDVYRAVAAVEEGELFQMHENPNVECPVGANIQSVLELILKRSQD 119 Query: 117 AFFDVLTQYSIECLVRN 133 A VL +++ LV + Sbjct: 120 AMEQVLADVTMKELVTD 136 >gi|254303299|ref|ZP_04970657.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323491|gb|EDK88741.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 140 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y ++ D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIIYYLTLNRDKDIISSNEISAEEDIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I C + L+K + Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCTIRHALKKIQDDLL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV N +S++ Sbjct: 121 DDFDKINFYDLVENNASLQ 139 >gi|296876096|ref|ZP_06900150.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432807|gb|EFH18600.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 149 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ + +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG L + AD+I++LD+ +A E + + + CP+ + + +VL Sbjct: 61 -TGGAELAKAADKISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A ++Q +++ +V + Sbjct: 118 DIQIAMEKEMSQTTLKDVVED 138 >gi|223940021|ref|ZP_03631886.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] gi|223891288|gb|EEF57784.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514] Length = 139 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L S +A + S F+ +IL L KA +V T G+ Sbjct: 1 MAVNTQFSIAVHILAGLGYRCGGNVTSSTLAHSVNTSPSFVRRILAKLSKARLVHTTTGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS----VLRKALN 116 G L R IT+L+V +A + A + + CP+ SC + S VL K Sbjct: 61 TGACCLARDPANITLLEVYQAVDAPKAFAIHKYNAQKPCPV--SCQIKSSLEGVLHKTQQ 118 Query: 117 AFFDVLTQYSIECLVRN 133 + + L + ++ ++ + Sbjct: 119 SLENSLAKITLADVISD 135 >gi|89256550|ref|YP_513912.1| hypothetical protein FTL_1231 [Francisella tularensis subsp. holarctica LVS] gi|115314981|ref|YP_763704.1| transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|156502669|ref|YP_001428734.1| rrf2 family transcriptional regulator [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010975|ref|ZP_02275906.1| transcriptional regulator family protein [Francisella tularensis subsp. holarctica FSC200] gi|254369464|ref|ZP_04985476.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp. holarctica FSC022] gi|290953094|ref|ZP_06557715.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. holarctica URFT1] gi|295313700|ref|ZP_06804282.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. holarctica URFT1] gi|89144381|emb|CAJ79670.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129880|gb|ABI83067.1| probable transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|156253272|gb|ABU61778.1| transcriptional regulator, rrf2 family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122414|gb|EDO66554.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp. holarctica FSC022] Length = 136 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG Sbjct: 3 KISKLLDYGLLVVVTIAQNDSNPYSTAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGIE 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + IT+LD+VK E+ + C K C L G+C ++ + + + Sbjct: 63 GGYTLVSDSRDITVLDIVKCVEKDVNLTGCCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120 Query: 122 LTQYSIECLVRNRSS 136 L++ SI +V N+ Sbjct: 121 LSKTSIYDIVNNKDK 135 >gi|32474577|ref|NP_867571.1| hypothetical protein RB6994 [Rhodopirellula baltica SH 1] gi|32445116|emb|CAD75118.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] gi|327541268|gb|EGF27811.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47] Length = 141 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + Y +M A+H + P R S+I I +L +IL+ L G V VR Sbjct: 1 MVINAAVHYACLAMMDLAMHSNDGQPVRTSEITSRHDIPGPYLVQILRTLKSTGWVRAVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG L D IT+LD+ +A E L +A Sbjct: 61 GSQGGYVLAVDPDSITLLDIAEAI----GCTESTDRGDQPMSDAQH-ALQRRWNEASEES 115 Query: 119 FDVLTQYSIECLVRN 133 L + + +VR Sbjct: 116 RKRLARVRLGDVVRE 130 >gi|118445083|ref|YP_879134.1| rrf2 family protein ( transcriptional regulator) [Clostridium novyi NT] gi|118135539|gb|ABK62583.1| rrf2 family protein (putative transcriptional regulator) [Clostridium novyi NT] Length = 139 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R ++Y I+E I FL KIL+ L AGIVE+ RG Sbjct: 1 MKITQEVDYALRTVLYLCKLGYGEKIEAKNISETENIPIRFLLKILRKLKHAGIVESYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117 GG L + I+I D+++ + ++ C K C L +C + + L N Sbjct: 61 VNGGYALNKYPKDISIEDIIRIIDGPIYMNRCIYDPKY-CNLNRSSTCVIHNALESVQNT 119 Query: 118 FFDVLTQYSIECLVR 132 L + E L+ Sbjct: 120 LVSNLKAINFENLLN 134 >gi|229160930|ref|ZP_04288919.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] gi|228622498|gb|EEK79335.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803] Length = 146 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMAYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQVVLEVILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMAQL 136 >gi|159045131|ref|YP_001533925.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912891|gb|ABV94324.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 156 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D + IAE + + + ++L L +AG++ + +G Sbjct: 23 MKRNSRLSLALHTLSHMAGEPDRMRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 82 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 GG RL RP IT+ DV A +E A C + ++SVL + + Sbjct: 83 AGGWRLARPPQDITLADVYLALDERMVATG-NAEDVPACSIEHALHRRVSSVLEEIEESL 141 Query: 119 FDVLTQYSIECL 130 L + SI + Sbjct: 142 VQRLRETSISEV 153 >gi|288573879|ref|ZP_06392236.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569620|gb|EFC91177.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 159 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ + + A+ RI ++A+A SE + K+ Q LV+AG+V +VRG Sbjct: 6 QVSEAISLALHGMGILALAGKR-MRIREMAKAVEASEAHMAKVFQRLVRAGLVGSVRGPA 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + +I++ V +A E C CP C + F D Sbjct: 65 GGFELLKKPSEISLYVVYRAIEGDLRPKSCVLGLS-RCPFRE-CMFGDFPNRVYEEFTDH 122 Query: 122 LTQYSIECLV 131 L S+ LV Sbjct: 123 LKSRSLGELV 132 >gi|251788573|ref|YP_003003294.1| BadM/Rrf2 family transcriptional regulator [Dickeya zeae Ech1591] gi|247537194|gb|ACT05815.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591] Length = 148 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L A+ + P R +IA + S + + +L L KAG+ ++ G Sbjct: 1 MPMSTRFVVAVHILTGFAVSDGKPMRSEEIAYSVNTSAVVIRGLLARLGKAGLTKSQLGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L + A I++LDV + E++ + +C + + + +L +A A Sbjct: 61 GGGTMLAKHAANISLLDVYETVEDTALFSLHRTPPCENCAVGSNILDAIHPILTRAREAL 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 L + +I + + + K Sbjct: 121 EQELAKTTIADVGAELARLGK 141 >gi|168185784|ref|ZP_02620419.1| Rrf2 family protein [Clostridium botulinum C str. Eklund] gi|169296028|gb|EDS78161.1| Rrf2 family protein [Clostridium botulinum C str. Eklund] Length = 139 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +R ++Y I+E+ I FL KIL+ L AGIVE+ RG Sbjct: 1 MKITQEVDYALRTVLYLCKLGYGEKIEAKNISESENIPIRFLLKILRKLKHAGIVESYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L + I+I D+++ + ++ C K C L S C + + L N Sbjct: 61 VNGGYALNKYPKDISIEDIIRIIDGPIYMNRCIYDPKY-CNLNRSSKCVIHNALESVQNT 119 Query: 118 FFDVLTQYSIECLVR 132 L + E L+ Sbjct: 120 LVSNLKAINFENLLN 134 >gi|294782303|ref|ZP_06747629.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] gi|294480944|gb|EFG28719.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] Length = 140 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I +C + L+K + Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDELL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV + + Sbjct: 121 DDFDKINFHDLVEENTGLY 139 >gi|256026588|ref|ZP_05440422.1| hypothetical protein PrD11_01075 [Fusobacterium sp. D11] gi|260494648|ref|ZP_05814778.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|289764592|ref|ZP_06523970.1| transcriptional regulator [Fusobacterium sp. D11] gi|260197810|gb|EEW95327.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|289716147|gb|EFD80159.1| transcriptional regulator [Fusobacterium sp. D11] Length = 141 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + D S+IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L R IT+ D V+ E+ + + C A + C + + L K N Sbjct: 61 ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVA-GQTSCSI-----IFEALEKVENN 114 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 F L + + + L +K Sbjct: 115 FLKNLEKVNFQELTCPHVPLK 135 >gi|210614867|ref|ZP_03290366.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787] gi|210150509|gb|EEA81518.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787] Length = 136 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK DY IR++ A+ + +S I A + +KI + L K G++++ RG Sbjct: 4 MLFTKECDYAIRIMR--ALSDGELVSVSNICAAEQLPSAMTYKITRKLEKQGLLKSCRGT 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNA 117 GG L R +I++ D+ A + + EC C + C + + + Sbjct: 62 NGGYCLNRTLSEISLYDICAAVDPDILLLECMKDG-YHCSMNNQQKPCLVHREFCRLQSM 120 Query: 118 FFDVLTQYSIECL 130 + Q S+ L Sbjct: 121 LLQEMRQKSLSEL 133 >gi|331092200|ref|ZP_08341030.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401972|gb|EGG81546.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium 2_1_46FAA] Length = 133 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK DY IR++ A+ + +S I +S +KI + L KAG+++++RG Sbjct: 1 MLFTKECDYAIRIMR--ALSSGEFINVSTICTMENLSSAMTYKITRKLEKAGLLKSLRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALNA 117 GG L R I++ DV + E + EC C + C + + Sbjct: 59 NGGYALNRSLKDISLYDVCTSIEPDILLLECM-KKDYQCSMNTQNTPCLVHGEFCRIQRI 117 Query: 118 FFDVLTQYSIECL 130 L ++ L Sbjct: 118 LLQELQHKNLAEL 130 >gi|257468462|ref|ZP_05632556.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317062725|ref|ZP_07927210.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688401|gb|EFS25236.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 136 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ +DY I++++Y + + +I+EA +S F KIL+ L K +VE+ RG Sbjct: 1 MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEQMSMKFALKILRRLCKVKLVESFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + A+ I++ V++ + F+ + + + S+L Sbjct: 61 IKGGYKLKKSANDISLRSVIEVIQGDLFINTSLKNVNSAKKVEAD-PVNSLLYSIQEEVK 119 Query: 120 DVLTQYSIECL 130 L+ S + L Sbjct: 120 AKLSNTSFKDL 130 >gi|194335315|ref|YP_002017109.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] gi|194307792|gb|ACF42492.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon phaeoclathratiforme BU-1] Length = 154 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK TDY IR L+ A IA I FL +LQ +++ ++ + G Sbjct: 1 MKVLTKNTDYAIRALLALAARKGSYVSARSIATEHDIPYQFLRGLLQEMIRHDLIVSKEG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + D I++ +++ + ++EC +I C C L + + Sbjct: 61 VQGGFMMKKDPDTISVTQLIEIFQGKVQMSECMFRKQI-CGNRARCVLRHEIMRIEQVVQ 119 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + +I L+R+ + ++ Sbjct: 120 SEFEKVTIGKLMRDLQAANQV 140 >gi|118477378|ref|YP_894529.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118416603|gb|ABK85022.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] Length = 164 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 22 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 82 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 140 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 141 AMEEVLRNITMGQL 154 >gi|237740621|ref|ZP_04571102.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229422638|gb|EEO37685.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 140 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L R ++T D+++ ++ + C S I +C + L+K + Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDELL 120 Query: 120 DVLTQYSIECLVRNRSSIK 138 D + + LV + + Sbjct: 121 DDFDKINFHDLVEKNTGLY 139 >gi|305665393|ref|YP_003861680.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170] gi|88710148|gb|EAR02380.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170] Length = 143 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + Y ++ ++Y A+++ N+I I+E + + +L K+LQ L + IV + RG Sbjct: 2 FSNSSKYALKAVLYLAVNSSESNKILAKNISEPINVPQAYLAKLLQELSRYNIVSSTRGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + T++++V + + C S + +C C L Sbjct: 62 NGGFYLSGQNKKTTLIEIVNVIDGDNRLNSCLLSLQ-NCDNEKPCPLHEFAAPFRTDLLK 120 Query: 121 VLTQYSIECLV 131 L SIE L Sbjct: 121 NLENSSIEDLA 131 >gi|294054230|ref|YP_003547888.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] gi|293613563|gb|ADE53718.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] Length = 137 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ + +Y RVL D I +A+A I +L +IL L AG++ + R Sbjct: 1 MKLSHKLEYACRVLAQLGRSYGQDKLAHIDTLADAEKIPANYLVQILNELRTAGLITSKR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G++GG L R +I + +V+A + + + +S V + + F Sbjct: 61 GKQGGYALSREPSKIQLSAIVQAVDAEL-LEQHLSSDGHSGERVAT-----IWGDIAKNF 114 Query: 119 FDVLTQYSIECLV 131 + + +Y++E ++ Sbjct: 115 EEQVGRYTLEDMI 127 >gi|87309332|ref|ZP_01091468.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM 3645] gi|87287971|gb|EAQ79869.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM 3645] Length = 160 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 4/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ Y ++ + A + P S++A + E FL ++L+ LV GI+ + RG Sbjct: 1 MKLSRTVAYALQATLQLAETDSSSPVPCSKLAAKGDMPERFLLQVLRNLVTHGILRSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L RPA+QI++L++++A + + ++D + L L A Sbjct: 61 VDGGYTLVRPAEQISLLEIIEAIDGPMD-SRLPIESEVDSSFQEN--LKEALANVTTAMR 117 Query: 120 DVLTQYSIECLVRNRSSIKKIF 141 L I LV ++ + + Sbjct: 118 QQLADIKISKLVTKSTNGRPVI 139 >gi|319956225|ref|YP_004167488.1| transcriptional regulator, badm/rrf2 family [Nitratifractor salsuginis DSM 16511] gi|319418629|gb|ADV45739.1| transcriptional regulator, BadM/Rrf2 family [Nitratifractor salsuginis DSM 16511] Length = 134 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ ++Y + L ++ P Q+A CI + FL KIL L K I+E+ RG Sbjct: 1 MLLTRASEYALLSLDKI-RKSEQPIGSEQLARELCIPKSFLAKILHNLAKQEILESHRGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117 +GG + DQI++ DV+ A E S V +C + +CP G C ++ L Sbjct: 60 QGGFTIKAGMDQISVYDVILAAEGKSPAVFDC-TQYAENCPNGSIGGCAISPFLATFQGK 118 Query: 118 FFDVLTQYSIECL 130 D L + +++ L Sbjct: 119 IDDFLNELTLDQL 131 >gi|182413404|ref|YP_001818470.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1] gi|177840618|gb|ACB74870.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae PB90-1] Length = 151 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 2/129 (1%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R + +L Y ++IA + + + + ++L L KAG+V +G GG Sbjct: 4 NSRFAVSLHILAYLVYRAGAAVPSAEIARSVDTNPVVIRRLLSALAKAGLVTAHKGATGG 63 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDV 121 + + IT+LDV +A E + S CP+ L VL +A Sbjct: 64 FAIAAAPEAITLLDVYRAVEPAPDQGLRHFSPNPGCPVGARMERILHRVLGEAQAGMEAA 123 Query: 122 LTQYSIECL 130 L + ++ + Sbjct: 124 LRRVTLADM 132 >gi|237744867|ref|ZP_04575348.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229432096|gb|EEO42308.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 141 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + D S+IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDKIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L R IT+ D V+ E+ + + C A + C + + L K N Sbjct: 61 ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVA-GQTSCSI-----IFEALEKVENN 114 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 F L + + + L +K Sbjct: 115 FLKNLEKVNFQELTCPHVPLK 135 >gi|295402097|ref|ZP_06812057.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|312109802|ref|YP_003988118.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. Y4.1MC1] gi|294975879|gb|EFG51497.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus thermoglucosidasius C56-YS93] gi|311214903|gb|ADP73507.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. Y4.1MC1] Length = 136 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + Y A + IA++ + L KIL L K I+ + G +GG L P Sbjct: 8 AVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFTLNDP 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFFDVLTQY 125 + IT+ + K T E V +C S++ +CP+ + L+++L + A F + L Sbjct: 68 PEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRN--LSNILIRVCHNAEQHFLNYLKGV 124 Query: 126 SIECLVRN 133 +I+ ++ Sbjct: 125 TIKDIIDE 132 >gi|283781762|ref|YP_003372517.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440215|gb|ADB18657.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM 6068] Length = 152 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L++ Y +R + A + + P S++A A + E FL +IL+ LV GI+ + RG Sbjct: 1 MKLSRTVAYAVRATLQLAQLEAEGPVPCSRLASAGKMPERFLLQILRNLVTHGILRSTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L +PA +I++L+V++A E + + L L + Sbjct: 61 VDGGYSLVKPAGEISLLEVIEAIEGPYDS---SLEMGEGLSIDSQTKLQDALNSVTSTTR 117 Query: 120 DVLTQYSIECLVRNRS 135 + L + L++ + Sbjct: 118 NQLEAIKLAQLLKAPT 133 >gi|312868528|ref|ZP_07728728.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis F0405] gi|311096273|gb|EFQ54517.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis F0405] Length = 147 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ + +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG L + AD+I++LD+ +A E + + + CP+ + + +VL Sbjct: 61 -TGGAELAKAADEISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + Q S+E +V+ Sbjct: 118 DIQTAMEKEMAQISLEQVVKE 138 >gi|56416821|ref|YP_153895.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries] gi|56388053|gb|AAV86640.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries] Length = 520 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+ Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFQPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114 + RG GG L P + IT+ ++ + + + C + P G C ++ Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGNEREGCLPFPGVRCNSHNLWDGI 120 Query: 115 LNAFFDVLTQYSIECLVRNR 134 L SI + N Sbjct: 121 EKYVMHYLKNTSILDVFNNN 140 >gi|254995024|ref|ZP_05277214.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Mississippi] Length = 520 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+ Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFQPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114 + RG GG L P + IT+ ++ + + + C + P G C ++ Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120 Query: 115 LNAFFDVLTQYSIECLVRNR 134 L SI + N Sbjct: 121 ERYVMHYLKNTSILDVFNNN 140 >gi|262068100|ref|ZP_06027712.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] gi|291378186|gb|EFE85704.1| transcriptional regulator family protein [Fusobacterium periodonticum ATCC 33693] Length = 141 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNA 117 GG +L + IT+ D V+ E+ + C + SC + S L + N Sbjct: 61 ANGGYKLNKDPKDITLRDAVETIEDEIII------KDRSCVVGQTSCSVIFSALEEVENN 114 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 F + L + + + L +K Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135 >gi|313905671|ref|ZP_07839032.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] gi|313469495|gb|EFR64836.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium cellulosolvens 6] Length = 146 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 9/146 (6%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + +++ +A + + + + KIL L AG++ +RG Sbjct: 1 MQISSRFTVALHIFTCVDTFKDEHKVTSDFLAASINTNPVIIRKILTQLKNAGLINVIRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKAL 115 GG+ L R IT DV +A E E + S +CP+ + L L+ Sbjct: 61 -TGGIELTRDLKDITFYDVYQAIEPLEDGDLFRFHESPNPECPVGRNIHLLLDDKLKNIQ 119 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141 A + +Y++ L RS ++++ Sbjct: 120 EAMESEMKKYTLNDL---RSGMQELL 142 >gi|159038768|ref|YP_001538021.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917603|gb|ABV99030.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola CNS-205] Length = 169 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 11/142 (7%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L T++ + A + +Q+A + +L K LQ LVKAG++ G Sbjct: 1 MKLPISTEWLLHCAATLAQLDAGSTASAAQLARYYDLPAPYLAKQLQALVKAGVLVATTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 GG RL +PA +IT+L +V+A + C A +C + C L + Sbjct: 61 PTGGFRLAQPASEITLLRIVEAVGGTSPPYVCREIRQQGQGALPADECQNM--CVLAEKM 118 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 +A A+ L S+ +V + Sbjct: 119 TEAHEAWRRSLAGVSLADIVAS 140 >gi|239828144|ref|YP_002950768.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacillus sp. WCH70] gi|239808437|gb|ACS25502.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70] Length = 136 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + Y A IA++ + L KIL L K I+ + G +GG L Sbjct: 8 AVHCVAYLAQKQSQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFSLNDS 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127 + IT+ + K T E V +C S++ +CP+ + L V A F + L +I Sbjct: 68 PEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRNLSNILIRVFHNAEEHFLNYLKGVTI 126 Query: 128 ECLVRNRSS 136 + ++ +S Sbjct: 127 KDIIDEINS 135 >gi|269958756|ref|YP_003328543.1| putative cysteine desulfurase [Anaplasma centrale str. Israel] gi|269848585|gb|ACZ49229.1| putative cysteine desulfurase [Anaplasma centrale str. Israel] Length = 520 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+ Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFKPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114 + RG GG L P + IT+ ++ + + + C + P G C ++ Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120 Query: 115 LNAFFDVLTQYSIECLVRNR 134 L SI + N Sbjct: 121 EKYVMHYLKNTSILDVFNNN 140 >gi|213025900|ref|ZP_03340347.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 93 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+Y A + + IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ Sbjct: 1 LIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANT 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106 I I DVV+ E + C + C + +C Sbjct: 61 ICIGDVVRELE-PLSLVNCSSEF---CHITPACR 90 >gi|28377816|ref|NP_784708.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254556000|ref|YP_003062417.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300767801|ref|ZP_07077711.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179992|ref|YP_003924120.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270649|emb|CAD63555.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254044927|gb|ACT61720.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300494786|gb|EFK29944.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045483|gb|ADN98026.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 174 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K + VL+ A + P + E S ++ KI++ LV AG+V + G Sbjct: 1 MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113 GGV L R + I+I DVV A E + + G+ + + + Sbjct: 61 NNGGVHLARSPEDISITDVVAAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSR 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A + D L Q + L++ Sbjct: 121 ADQLWLDFLDQQKLATLIKE 140 >gi|229096463|ref|ZP_04227435.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] gi|229115387|ref|ZP_04244795.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228668107|gb|EEL23541.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3] gi|228687025|gb|EEL40931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29] Length = 145 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 3 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 63 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQVVLEVILIQAQS 121 Query: 117 AFFDVLTQYSIECL 130 A +VL S+E L Sbjct: 122 AMEEVLKNISMEQL 135 >gi|296110959|ref|YP_003621340.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832490|gb|ADG40371.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 168 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 16/149 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + +++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSNAVEQSLVVLVMLALQKDELPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-------ECFASHKIDCPLVGSCG------ 106 + GG +L RP QIT+LDV +A E F + K + + Sbjct: 61 KEGGFKLARPVSQITLLDVYQAIEGMGSFIHSTQLADRIFLNQKSNKRIEDVQQALAVAT 120 Query: 107 --LTSVLRKALNAFFDVLTQYSIECLVRN 133 + +V +A F + L Y+I L+++ Sbjct: 121 NDVLTVFNEAEQDFKNRLENYTIAKLLQH 149 >gi|228920651|ref|ZP_04083995.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839016|gb|EEM84313.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 164 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 22 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 82 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 140 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 141 AMEEVLRNITMGQL 154 >gi|70725313|ref|YP_252227.1| hypothetical protein SH0312 [Staphylococcus haemolyticus JCSC1435] gi|68446037|dbj|BAE03621.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 160 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ + +++ + +++ +S+ +L KI++ LVK G+V + G Sbjct: 1 MKLSIGWEQAVYVLLMLNLLSEHSVMTSTALSDRLNVSDSYLKKIIKALVKEGLVNSSTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 + GG L +P +QIT DV A E + + + C ++ L Sbjct: 61 KNGGFSLNKPLNQITFYDVFLAIEGRDAIFSSQQLLKPFLGENEGQKAEMCVVSHALNTI 120 Query: 115 LNAFFDVLTQYSIECLVRN 133 + L+ +++ + +N Sbjct: 121 QHTLISTLSSITLDEVNQN 139 >gi|56419543|ref|YP_146861.1| hypothetical protein GK1008 [Geobacillus kaustophilus HTA426] gi|56379385|dbj|BAD75293.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 136 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + Y A + IA++ + L KIL L K I+ + G +GG L P Sbjct: 8 AVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFSLNDP 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFFDVLTQY 125 + IT+ + K T E V +C S++ +CP+ + L+ +L + A F + L Sbjct: 68 PEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRN--LSDILIRVCHNAEQHFLNYLKGV 124 Query: 126 SIECLVRNRSS 136 +I+ ++ +S Sbjct: 125 TIKDIIDEINS 135 >gi|299770003|ref|YP_003732029.1| putative transcriptional regulator [Acinetobacter sp. DR1] gi|298700091|gb|ADI90656.1| putative transcriptional regulator [Acinetobacter sp. DR1] Length = 141 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91 + KI L KAG+V G RGG L R A +I+ LD+V A E + EC Sbjct: 1 MAKIFPKLEKAGLVIAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60 Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 F D G C + +V+ +A A D L +++ + Sbjct: 61 FNHAPPDWATGGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102 >gi|325130469|gb|EGC53229.1| rrf2 transcriptional regulator family protein [Neisseria meningitidis OX99.30304] Length = 130 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 ++S I+E IS +L ++ L +AG+VE++RG GG L PA +I I ++ A Sbjct: 6 GAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAA 65 Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 E+ +C K +C C + D L +++ ++ +++ Sbjct: 66 EDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTINDYLGSVTLQSIIEQKNN 117 >gi|187780034|ref|ZP_02996507.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC 15579] gi|187773659|gb|EDU37461.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC 15579] Length = 141 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV++Y + I+E + FL K+L+ L K+GIV + RG Sbjct: 1 MKITQEADYALRVILYLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + DV++A + + C + + G+C + L K Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRKL 120 Query: 119 FDVLTQYSIECLVRNRSSI 137 L + + ++ + SI Sbjct: 121 VSELEAVNFQEILDQKGSI 139 >gi|169350557|ref|ZP_02867495.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552] gi|169292877|gb|EDS75010.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552] Length = 146 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + +DY +A + ++ + + KIL L AG+VE RG Sbjct: 1 MQISSRFTIAVHIFACIDTFKDDYKITSDFLAASVNVNPVIIRKILSQLKNAGLVEVKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113 GG + + +QI D+ A E E+ + + CP+ + + ++L + Sbjct: 61 -SGGATIAKELEQINFYDIYSAVECIENGELFHFHENPNSQCPVGRN--IHNILDGKLVQ 117 Query: 114 ALNAFFDVLTQYSIECLVRN 133 NA + L + ++ ++++ Sbjct: 118 VQNALENELKKITLADVIKD 137 >gi|239616862|ref|YP_002940184.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] gi|239505693|gb|ACR79180.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF 19.5.1] Length = 144 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + K Y +R+L+ +I N +I+ + + F KIL L KAG+V +RGR Sbjct: 1 MLIQKTVRYALRILVKLSIEN-RALNSKEISLSENLDHGFTLKILYYLKKAGLVRAIRGR 59 Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG L + + ITI + +A + + +C C C + + N Sbjct: 60 KGGYALAKNPEDITITKIFEAIPDVEERLIDC----DTSCKFHKECYVKDFW-ELTNHII 114 Query: 120 DV-LTQYSIECLVRNR 134 + SI ++ N Sbjct: 115 GYTFSNVSIANIINNN 130 >gi|110679145|ref|YP_682152.1| rrf2 family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109455261|gb|ABG31466.1| transcriptional regulator, rrf2 family, putative [Roseobacter denitrificans OCh 114] Length = 177 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A + + IAE + + + ++L L KAG++ + +G Sbjct: 38 MKRNSRLSLALHTLGHMAGDPERVQTSADIAEHAGTNPVVVRRVLGKLRKAGLLTSEKGH 97 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 GG RL R QIT+ DV A +ES A C + + SVL+ + Sbjct: 98 AGGWRLARAPGQITLADVYLALDESLVATG-EAEAIPACSVEHILQRKVASVLKDVEQSL 156 Query: 119 FDVLTQYSIECLVRNRS 135 + L+ +I + + Sbjct: 157 VERLSATTIAEVRESND 173 >gi|222475186|ref|YP_002563602.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Florida] gi|222419323|gb|ACM49346.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Florida] Length = 520 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+ Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFKPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114 + RG GG L P + IT+ ++ + + + C + P G C ++ Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120 Query: 115 LNAFFDVLTQYSIECLVRNR 134 L SI + N Sbjct: 121 ERYVMHYLKNTSILDVFNNN 140 >gi|220911591|ref|YP_002486900.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Arthrobacter chlorophenolicus A6] gi|219858469|gb|ACL38811.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter chlorophenolicus A6] Length = 161 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + D +R LM A IA++ + K + L G+++ RG Sbjct: 1 MKINAFADVSLRALMVLAAAPGNQLLTTQNIADSVGTPYNHVSKAMARLRTMGLIDVERG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL T+ +++ + A+C A+ +CPL+ C L + L +A AF+ Sbjct: 61 RTGGSRLSSAGRTATVGQILRELDTRTDPADCMAA-TGNCPLINECKLRAALARAREAFY 119 Query: 120 DVLTQYSIECL 130 L I L Sbjct: 120 RELDPVVIANL 130 >gi|89068825|ref|ZP_01156208.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola granulosus HTCC2516] gi|89045595|gb|EAR51658.1| iron-sulfur cluster assembly transcription factor IscR, putative [Oceanicola granulosus HTCC2516] Length = 143 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 13 VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ + +++ IS +L ++ L +AG+VE+VRG GG RL RPA Sbjct: 3 ALADLALLPQGGLASLGEVSRRQDISLPYLEQLFVKLRRAGLVESVRGPGGGYRLARPAS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 +I + DV+ A +E+ A + LT+ L + L+A + L Q + + Sbjct: 63 EIRVADVLGAVDETVSAMHKGAGASGGASGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122 Query: 131 VRN 133 V N Sbjct: 123 VGN 125 >gi|254423512|ref|ZP_05037230.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7335] gi|196191001|gb|EDX85965.1| rrf2 family protein (putative transcriptional regulator) [Synechococcus sp. PCC 7335] Length = 140 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 4/135 (2%) Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ ++ + + QIAE + +L K+L L ++ ++ +VRG +GG +L +P+ Q Sbjct: 1 MLDLSLQPAGSLSSVRQIAERQQLPAPYLEKLLIELRRSRLINSVRGAQGGYQLAKPSSQ 60 Query: 73 ITILDVVKATEE---SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 I++ +++A E S + + + + + ++E Sbjct: 61 ISLGQILEAVGESASSMTAMAVSSPDNSTQVQAEDWVTSMLWNRLNQKIQEAFHSITLED 120 Query: 130 LVRNRSSIKKIFNAG 144 L + S + G Sbjct: 121 LYYDARSWQAAQGEG 135 >gi|260888343|ref|ZP_05899606.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185] gi|330838337|ref|YP_004412917.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] gi|260861879|gb|EEX76379.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185] gi|329746101|gb|AEB99457.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena ATCC 35185] Length = 148 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YG+ + + A + P I I+E IS+++L ++ L A +V + + Sbjct: 1 MKISAKGRYGLAAMAFLARIGQANSPTTILTISENLGISKIYLEQVFSLLKHARLVTSSK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF 86 G +GG L R A +IT DV+ A E Sbjct: 61 GSQGGYHLARAAQEITAWDVLAAIELPL 88 >gi|88658169|ref|YP_507438.1| rrf2/aminotransferase, class V family protein [Ehrlichia chaffeensis str. Arkansas] gi|88599626|gb|ABD45095.1| rrf2/aminotransferase, class V family protein [Ehrlichia chaffeensis str. Arkansas] Length = 492 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87 S IA + +SE +L +I+ L K G++ + +G GG L + + IT+ ++++ E+ Sbjct: 2 SHIANSQSLSEGYLEQIIVKLKKQGLINSTKGPGGGYSLNKSPNSITLNLILESIGENIK 61 Query: 88 VAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + C +H I C C ++ N L S+E ++ N Sbjct: 62 ITRC-KNHLIGCLSNNARCITHNLWDNIGNHIKKYLNSISLEDILNNN 108 >gi|30261949|ref|NP_844326.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47527212|ref|YP_018561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184791|ref|YP_028043.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49481167|ref|YP_036090.1| RRF2 family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143498|ref|YP_083331.1| RRF2 family protein [Bacillus cereus E33L] gi|165873201|ref|ZP_02217814.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167633141|ref|ZP_02391467.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167638458|ref|ZP_02396735.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170686336|ref|ZP_02877557.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|170706135|ref|ZP_02896597.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|177650797|ref|ZP_02933694.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190566252|ref|ZP_03019170.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196036748|ref|ZP_03104139.1| rrf2 family protein [Bacillus cereus W] gi|196041922|ref|ZP_03109210.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|218903070|ref|YP_002450904.1| rrf2 family protein [Bacillus cereus AH820] gi|222095568|ref|YP_002529626.1| hypothetical protein BCQ_1908 [Bacillus cereus Q1] gi|227815262|ref|YP_002815271.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229029646|ref|ZP_04185722.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|229600425|ref|YP_002866321.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254684513|ref|ZP_05148373.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254721270|ref|ZP_05183060.1| rrf2 family protein [Bacillus anthracis str. A1055] gi|254734816|ref|ZP_05192528.1| rrf2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254741217|ref|ZP_05198905.1| rrf2 family protein [Bacillus anthracis str. Kruger B] gi|254755471|ref|ZP_05207505.1| rrf2 family protein [Bacillus anthracis str. Vollum] gi|254760007|ref|ZP_05212031.1| rrf2 family protein [Bacillus anthracis str. Australia 94] gi|301053482|ref|YP_003791693.1| RRF2 family protein [Bacillus anthracis CI] gi|30256575|gb|AAP25812.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47502360|gb|AAT31036.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178718|gb|AAT54094.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|49332723|gb|AAT63369.1| conserved hypothetical protein, possible RRF2 family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976967|gb|AAU18517.1| conserved hypothetical protein; possible RRF2 family protein [Bacillus cereus E33L] gi|164711075|gb|EDR16639.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167513759|gb|EDR89128.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167531953|gb|EDR94618.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170129137|gb|EDS98002.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|170669412|gb|EDT20154.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172083258|gb|EDT68319.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190562387|gb|EDV16354.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|195990631|gb|EDX54608.1| rrf2 family protein [Bacillus cereus W] gi|196027294|gb|EDX65913.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|218539939|gb|ACK92337.1| rrf2 family protein [Bacillus cereus AH820] gi|221239626|gb|ACM12336.1| conserved hypothetical protein [Bacillus cereus Q1] gi|227004632|gb|ACP14375.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|228731650|gb|EEL82556.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271] gi|229264833|gb|ACQ46470.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|300375651|gb|ADK04555.1| conserved hypothetical RRF2 family protein [Bacillus cereus biovar anthracis str. CI] Length = 143 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGQL 133 >gi|304394778|ref|ZP_07376676.1| BadM/Rrf2 family transcriptional regulator [Ahrensia sp. R2A130] gi|303293077|gb|EFL87479.1| BadM/Rrf2 family transcriptional regulator [Ahrensia sp. R2A130] Length = 129 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + L + A P Q+A + + + +IL L +A + + RGR Sbjct: 1 MKTNSQLNVALHTLGHIAASAGEPMTSEQLASCAGTNPVVVRRILGVLRRADLCVSARGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L R +IT+ D+ A E +H C + G L L++A + Sbjct: 61 SGGWTLTRGPAEITLGDIHAAL----APPETEDAHTHTCKIAGRLDDRLDQALKRASRSM 116 Query: 119 FDVLTQYSIECLV 131 L + ++ LV Sbjct: 117 RQELDRTTLADLV 129 >gi|91976008|ref|YP_568667.1| hypothetical protein RPD_1529 [Rhodopseudomonas palustris BisB5] gi|91682464|gb|ABE38766.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisB5] Length = 154 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A H D IA+ IS L K+L+ LV+A ++E+VRG Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAKKYDISLNHLAKVLRTLVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG ++T+LD++ E++ ++ AS + S L VL Sbjct: 61 GGGYTFSGNPKRVTLLDIIALFEDTAPASDLTASDDHE----ESRALHKVLGDIDEIAIT 116 Query: 121 VLTQYSIECLVR 132 L S+ L++ Sbjct: 117 TLRSVSLTSLLK 128 >gi|154684993|ref|YP_001420154.1| YwnA1 [Bacillus amyloliquefaciens FZB42] gi|154350844|gb|ABS72923.1| YwnA1 [Bacillus amyloliquefaciens FZB42] Length = 147 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 5/146 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R GI +L I+ D + +A + + F+ KI+ L KAG+V+ G Sbjct: 1 MSISSRFAVGIHILALIEINEDGISTSEFLAGSVNTNPAFIRKIVGMLKKAGLVKVRPGI 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + +IT+LDV +A + + + CP+ + + + A + Sbjct: 61 AG-AELAKDLTEITLLDVYRAVNVVQDKELFSIHENPNPQCPVGRNIQSTIGPIFEIAQS 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142 A L +IE +V++ +K+ N Sbjct: 120 ALEKALGHITIEDVVKDIIEKEKLTN 145 >gi|323488201|ref|ZP_08093452.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2] gi|323398205|gb|EGA91000.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2] Length = 168 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK + I +++ A P +I++ +S ++ KI + LV GI +V G Sbjct: 1 MQLTKGVEQAICIIVLLATQESSAPLASDEISKRLGVSPSYMKKITRKLVVQGIAVSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-----CFASHKIDCPLVGSCGLTSVLRKA 114 GGV L + A IT+LDV++A E + A + G L +V + Sbjct: 61 NNGGVSLAKSATDITMLDVIEAMEGPIKIYPDTGLIRLAFKDGEYAKKGQEILQNVFAQG 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140 + L++ + L++ + + Sbjct: 121 DRLLIEYLSKVTAADLLKEGLGMSNL 146 >gi|299068911|emb|CBJ40152.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum CMR15] Length = 148 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG V + G Sbjct: 6 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 64 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPAD+IT+LDV +A E +A ++ C + L V +A +A Sbjct: 65 SGGSTLARPADRITLLDVFRAVESPVLIALPYSQPNPACEVGREITGVLERVTARAQSAM 124 Query: 119 FDVLTQYSIECLVRN 133 L +I ++ Sbjct: 125 EAELAAQTIAGMLAE 139 >gi|206970723|ref|ZP_03231675.1| rrf2 family protein [Bacillus cereus AH1134] gi|217959425|ref|YP_002337975.1| rrf2 family protein [Bacillus cereus AH187] gi|218235411|ref|YP_002366638.1| rrf2 family protein [Bacillus cereus B4264] gi|296502541|ref|YP_003664241.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|206734359|gb|EDZ51529.1| rrf2 family protein [Bacillus cereus AH1134] gi|217065668|gb|ACJ79918.1| rrf2 family protein [Bacillus cereus AH187] gi|218163368|gb|ACK63360.1| rrf2 family protein [Bacillus cereus B4264] gi|296323593|gb|ADH06521.1| RRF2 family protein [Bacillus thuringiensis BMB171] gi|326939570|gb|AEA15466.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 143 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGQL 133 >gi|256847668|ref|ZP_05553113.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256715357|gb|EEU30333.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 146 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R I +L Y I+ D IA + S + + +I+ L KAG+++T G Sbjct: 1 MKVSTRFSDAIHILAYLNIYQDTKLSSENIAASVMTSPVVVRRIMGALQKAGLIQTTHGS 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116 L + I++LD+ A E + + + +C + G+ + VL ++ N Sbjct: 61 P-NPHLAKQPSAISLLDIYYAVEGNRQLFSVDPTTNPECIVGGN--IQKVLDQTYQEVQN 117 Query: 117 AFFDVLTQYSIECLVRN 133 A F L++ ++E ++ + Sbjct: 118 AAFGRLSRITLEDIIND 134 >gi|17548747|ref|NP_522087.1| hypothetical protein RS00405 [Ralstonia solanacearum GMI1000] gi|17430996|emb|CAD17677.1| probable cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum GMI1000] Length = 143 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLASAGE-PVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPAD+IT+LDV +A E +A + C + L V +A +A Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119 Query: 119 FDVLTQYSIECLV 131 L +I ++ Sbjct: 120 EAELAAQTIAGML 132 >gi|228914539|ref|ZP_04078148.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927012|ref|ZP_04090078.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945562|ref|ZP_04107912.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090931|ref|ZP_04222155.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|228692332|gb|EEL46067.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42] gi|228814080|gb|EEM60351.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832747|gb|EEM78318.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844858|gb|EEM89900.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 146 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGQL 136 >gi|75911214|ref|YP_325510.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704939|gb|ABA24615.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis ATCC 29413] Length = 156 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 P +S I+ I E +L +IL L +AG+V++ RG RGG L R Q+T+L+VV Sbjct: 36 QKTPTTMSDISAKHPIPERYLEQILSSLRRAGVVQSQRGSRGGFVLTREPRQLTLLEVVI 95 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + E + ++ LV C + ++A A ++L+QY+I+ L R + Sbjct: 96 MLDGEQKEKESPSEENLEKSLV--C---EIWQQADVAAQNILSQYTIQDLCDQREA 146 >gi|229102555|ref|ZP_04233260.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28] gi|228680877|gb|EEL35049.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28] Length = 145 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 3 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 62 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 63 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 121 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 122 AMEEVLRNITMGQL 135 >gi|65319235|ref|ZP_00392194.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] Length = 147 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 65 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 123 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 124 AMEEVLRNITMGQL 137 >gi|255262381|ref|ZP_05341723.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] gi|255104716|gb|EET47390.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp. R2A62] Length = 134 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A + IA + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLSHMAGDPSKTRTSADIANHAGTNPVVVRRVLGKLREAGMLTSEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 GG +L R + IT+ DV A +ES E + C + +T V+R + Sbjct: 61 AGGWKLARAPETITLADVYLALDESLIATE-TDNPVSSCSVENALHHRVTGVMRDIEQSL 119 Query: 119 FDVLTQYSIECL 130 + L + ++ + Sbjct: 120 IERLGETTLSDV 131 >gi|229017253|ref|ZP_04174159.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] gi|229023426|ref|ZP_04179927.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228737874|gb|EEL88369.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228744043|gb|EEL94139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] Length = 143 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHKQPNPDCPIGANIQVVLEVILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGQL 133 >gi|229109407|ref|ZP_04239002.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15] gi|229178348|ref|ZP_04305717.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W] gi|228605078|gb|EEK62530.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W] gi|228674033|gb|EEL29282.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15] Length = 147 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 65 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 124 AMEEVLRNITMGQL 137 >gi|30019984|ref|NP_831615.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|228939070|ref|ZP_04101667.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228958230|ref|ZP_04119959.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971948|ref|ZP_04132568.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978558|ref|ZP_04138933.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407] gi|229127271|ref|ZP_04256267.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4] gi|229138649|ref|ZP_04267231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26] gi|229144560|ref|ZP_04272963.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24] gi|229190044|ref|ZP_04317051.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876] gi|29895529|gb|AAP08816.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|228593433|gb|EEK51245.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876] gi|228638973|gb|EEK95400.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24] gi|228644768|gb|EEL01018.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26] gi|228656104|gb|EEL11946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4] gi|228781157|gb|EEM29360.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407] gi|228787765|gb|EEM35724.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801439|gb|EEM48327.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228820598|gb|EEM66626.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 146 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGQL 136 >gi|312880753|ref|ZP_07740553.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] gi|310784044|gb|EFQ24442.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans DSM 12260] Length = 157 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M+LT+ ++Y A P +I + +E + K LQ L++ G++ + +G Sbjct: 5 MNLTETLSLAFHSMVYLAERRGPRPCSAREIGDHFGATEPLVTKTLQRLLRTGLIRSCKG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L P +++++L + +A E C C + ++ Sbjct: 65 PGGGYSLVVPPEEVSLLSIAEAVEGPLKSQGCALKGCN----RPPCPVKGLVDAVTERVS 120 Query: 120 DVLTQYSIECLVR 132 L ++ LV Sbjct: 121 QELASKTLAELVE 133 >gi|154503942|ref|ZP_02041002.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149] gi|153795369|gb|EDN77789.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149] Length = 132 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK DY IR++ A+ + +S+I E + +KI + L K+G +++ RG Sbjct: 1 MLFTKECDYAIRIMR--ALSSGELISVSRICEMEHLPSAMTYKITRKLEKSGFLKSCRGT 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNA 117 GG L +I++ D+ A + + EC C + C + + N Sbjct: 59 NGGYALNLKLAEISLYDLCAAIDPDILLLECM-KEGYPCSMNSPKNPCLVHHEFCRLQNM 117 Query: 118 FFDVLTQYSIECL 130 + Q S+ L Sbjct: 118 LVQEMKQKSLAEL 130 >gi|238926642|ref|ZP_04658402.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238885588|gb|EEQ49226.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 156 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ + P ++ + + + +IL L +AG++ RG Sbjct: 12 MQISSRFTIAVHILICVDLFGKREPATSESLSGSIGAHPVVIRRILGQLRRAGLITVARG 71 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115 R GG + + IT+ D+ +A E + + CP+ L L Sbjct: 72 REGGAHIAKELTDITLADIFRAVESISGQSLFSFHENPNPACPVGSHIHDVLDHRLADIQ 131 Query: 116 NAFFDVLTQYSIECLVRN 133 +A + + ++ +++ Sbjct: 132 HAMEKEMEETTLADVIKE 149 >gi|237740772|ref|ZP_04571253.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229422789|gb|EEO37836.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 138 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L + IT+ D V+ E+ + + C A + C + L N Sbjct: 61 ANGGYKLNKDPKDITLRDAVETIEDEIIIKDRSCVA-GQTSCS-----VIFKALESVENN 114 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 F + L + + + L +K Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135 >gi|317489305|ref|ZP_07947819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|316911550|gb|EFV33145.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] Length = 158 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDYG+R ++Y A IAE I +L ++ Q L AGI+E G+ Sbjct: 1 MQLKASTDYGMRAILYLAAQ-GTTCSSKDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG RL + +L++++A ++ A+ K D G+ + V + Sbjct: 60 HGGYRLAKDPADTNVLEIMEALDDD---AKQSTRAKRDARKGGAMVQEIRQVYDLIEESM 116 Query: 119 FDVLTQYSIECLVR 132 L+ +++ L+ Sbjct: 117 DAYLSSLTVQMLLD 130 >gi|325677675|ref|ZP_08157327.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] gi|324110643|gb|EGC04807.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8] Length = 145 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T DY +R+ D +++ C++ F KIL+ LV AG+V++ +G Sbjct: 1 MYITLEADYAVRITAEL-CKADGRLDAKTLSDKTCVTLRFSLKILRKLVSAGLVKSFKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118 +GG + + IT+ V++A E ++ + C DC G+C Sbjct: 60 QGGYMIAKSPKDITLRMVIEAIEGTYCFSRCL-QPDADCSRGASGNCPFQDAFCDITKMV 118 Query: 119 FDVLTQYSIECL 130 + L Y+ L Sbjct: 119 SEKLETYNFAQL 130 >gi|213965359|ref|ZP_03393555.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium amycolatum SK46] gi|213951975|gb|EEB63361.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium amycolatum SK46] Length = 157 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT +D +RV+ A+ +++AE+ S + K++ LV+ G ++ V+G Sbjct: 1 MQLTLFSDLSLRVITLMAMGEPGRKYTAAEVAESLNASRAHVSKVVSRLVELGFLDAVKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG+ L A ++ +++ E + V +C DCPL+ +C L L A AFF Sbjct: 61 RNGGIYLRDSATDKSVGKLLRTLENN-EVVDCVG---TDCPLLPTCLLRGKLAAAQEAFF 116 Query: 120 DVLTQYSIECLV 131 L I L+ Sbjct: 117 AALDPVLIADLI 128 >gi|315150793|gb|EFT94809.1| Rrf2 family protein [Enterococcus faecalis TX0012] Length = 158 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + I +L IA + + + + +++ L KAG++ ++RG Sbjct: 1 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALN 116 L + ++I++ ++ A E + + +C + + + SVL K Sbjct: 61 N-KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQ 117 Query: 117 AFFDVLTQYSIECLVRN 133 + L ++ ++ Sbjct: 118 KMEEELKSITLADVIHE 134 >gi|300693471|ref|YP_003749444.1| transcriptional regulator, rrf2 [Ralstonia solanacearum PSI07] gi|299075508|emb|CBJ34801.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum PSI07] Length = 143 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPAD+IT+LDV +A E +A + C + L V +A +A Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119 Query: 119 FDVLTQYSIECLVRN 133 L +I ++ Sbjct: 120 EAELAAQTIAGMLAE 134 >gi|75763691|ref|ZP_00743371.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488818|gb|EAO52354.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 164 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 22 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 82 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 140 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 141 AMEEVLRNITMGQL 154 >gi|257789851|ref|YP_003180457.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|325832443|ref|ZP_08165396.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] gi|257473748|gb|ACV54068.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|325486004|gb|EGC88460.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1] Length = 158 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDYG+R ++Y A IAE I +L ++ Q L AGI+E G+ Sbjct: 1 MQLKASTDYGMRAILYLAAQ-GTTCSSKDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG RL + +L++++A ++ A+ K D G+ + V + Sbjct: 60 HGGYRLAKDPADTNVLEIMEALDDD---AKQSTRAKRDARKGGAMVQEIKQVYDLIEESM 116 Query: 119 FDVLTQYSIECLVR 132 L+ +++ L+ Sbjct: 117 DAYLSSLTVQMLLD 130 >gi|322508566|gb|ADX04020.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] Length = 141 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91 + KI L KAG+V G RGG L R A +I+ LD+V A E + EC Sbjct: 1 MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAV 60 Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 F + D G C + +V+ +A A D L +++ + Sbjct: 61 FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102 >gi|259416991|ref|ZP_05740911.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp. TrichCH4B] gi|259348430|gb|EEW60207.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp. TrichCH4B] Length = 142 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%) Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ + ++ I++ IS +L ++ L + G+V +VRG GG RL RPA Sbjct: 3 ALADIALQPSEGLVVLADISKRQDISLPYLEQLFVKLRRGGLVASVRGPGGGYRLARPAS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 +I +++++ A +E+ A + LT+ L + L+A + L Q + + Sbjct: 63 EIRVVEILAAVDETVDAMHKGAGASGGSSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122 Query: 131 VRNR 134 + N Sbjct: 123 IANE 126 >gi|313894737|ref|ZP_07828298.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon 137 str. F0430] gi|312976646|gb|EFR42100.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon 137 str. F0430] Length = 149 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 10/151 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ + D S+ ++ + + + +IL L +AG++ +RG Sbjct: 1 MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRVMRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113 R GG L RP +IT+ DV A E + + CP+ S + VL Sbjct: 61 REGGAYLVRPLSEITLADVFHAVESLGGDTLFSFHENPNPACPVGRS--IHDVLDNRLAG 118 Query: 114 ALNAFFDVLTQYSIECLVRN-RSSIKKIFNA 143 A + ++ + + R IK+ A Sbjct: 119 IQRAMERTMEGMTLADIAEDARQEIKRTAQA 149 >gi|257065288|ref|YP_003144960.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] gi|256792941|gb|ACV23611.1| transcriptional regulator, BadM/Rrf2 family [Slackia heliotrinireducens DSM 20476] Length = 146 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 4/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ ++ + +A + ++ + + +L L AGIV G Sbjct: 1 MRFSSRLPVATHILLCIALLGHEHKTTSTFLAGSVGVNPVIVRNVLGQLKAAGIVTVEPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117 GG L R ++IT+ DV++A E+ V +CP+ L + L A A Sbjct: 61 V-GGASLARAPEEITLRDVLEAVEDDAGVFRMHEHPSPECPVGRNVHAVLGAELDAAERA 119 Query: 118 FFDVLTQYSIECLVRNRSSI 137 D L ++ L + Sbjct: 120 MMDRLASATLADLADETRGL 139 >gi|229547399|ref|ZP_04436124.1| Rrf2 family transcriptional regulator protein [Enterococcus faecalis TX1322] gi|256854843|ref|ZP_05560207.1| rrf2 family protein [Enterococcus faecalis T8] gi|229307431|gb|EEN73418.1| Rrf2 family transcriptional regulator protein [Enterococcus faecalis TX1322] gi|256710403|gb|EEU25447.1| rrf2 family protein [Enterococcus faecalis T8] gi|315028301|gb|EFT40233.1| Rrf2 family protein [Enterococcus faecalis TX4000] Length = 141 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + I +L IA + + + + +++ L KAG++ ++RG Sbjct: 1 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALN 116 L + ++I++ ++ A E + + +C + + + SVL K Sbjct: 61 N-KNTLLKKPEEISLYEIYTAVELERDIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQ 117 Query: 117 AFFDVLTQYSIECLVRN 133 + L ++ ++ Sbjct: 118 KMEEELKSITLADVIHE 134 >gi|253581432|ref|ZP_04858657.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836502|gb|EES65037.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 140 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ +DY I++++Y + + +I+EA +S F KIL+ L K +VE+ RG Sbjct: 5 MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEKMSMKFALKILRRLCKVKLVESFRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L + AD I++ V++ + F+ + + + S+L Sbjct: 65 IKGGYKLKKSADDISLRSVIEVIQGDLFINTSLKNINSAKKVETD-PVNSLLYSIQEDVK 123 Query: 120 DVLTQYSIECL 130 L+ S + L Sbjct: 124 RKLSNTSFKDL 134 >gi|293396060|ref|ZP_06640341.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421558|gb|EFE94806.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582] Length = 157 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L + R IA + + + +IL L AG+ + G+ Sbjct: 1 MSTSTRFAVAIHILTNITLFRGQAVRSEDIARSVNTNPTVVRRILGALADAGLTHSQMGQ 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L +PA +IT+ D+ A E+ + + +C + + L + Sbjct: 61 GGGALLAKPASEITLRDIYHAVEDQPYFPLHRSKPNDECYIGHAIIPVLEGEFARISRHM 120 Query: 119 FDVLTQYSIECLV 131 L Q S+ +V Sbjct: 121 EASLAQTSLADIV 133 >gi|229011247|ref|ZP_04168440.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048] gi|228750130|gb|EEL99962.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048] Length = 143 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L ++G V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKIMSYLKQSGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDSHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGQL 133 >gi|218896888|ref|YP_002445299.1| rrf2 family protein [Bacillus cereus G9842] gi|218543446|gb|ACK95840.1| rrf2 family protein [Bacillus cereus G9842] Length = 143 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLGNITMGQL 133 >gi|154148775|ref|YP_001406452.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis ATCC BAA-381] gi|153804784|gb|ABS51791.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis ATCC BAA-381] Length = 137 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTKR Y +++ + + P I IA+ S+ +L + + L KAG+++ +RG Sbjct: 4 LTKRGVYAAIIMLEISKGDKTAPVSIKSIADTLGKSKNYLEQAINALRKAGLIKALRGPN 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + ++IT D+ ATE + ++ L N Sbjct: 64 GGYFLLKKPNEITFGDIFNATEGELVMTNLDIKNEN---------LKRFFDDLNNKIKKT 114 Query: 122 LT 123 L Sbjct: 115 LE 116 >gi|296115596|ref|ZP_06834223.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295977845|gb|EFG84596.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 106 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCP 100 + L +AG+V + RG GG RL RPAD+I D+++ T+ + C F DC Sbjct: 1 MSDLRRAGLVTSQRGSGGGYRLARPADRIMFADIIRVTDGPISMLPCVSRNFYEQCEDCS 60 Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 C L + + A D+L S+ Sbjct: 61 NEEICALRKIFAEVRTAVADILDHRSLAD 89 >gi|229059615|ref|ZP_04196993.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] gi|228719628|gb|EEL71227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603] Length = 143 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L ++G V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKIMSYLKQSGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143 A +VL ++ L S+++ NA Sbjct: 120 AMEEVLRNITMGQLFE---SLQQKMNA 143 >gi|325676084|ref|ZP_08155766.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325553124|gb|EGD22804.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 152 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH++ R D +R L+ A + + ++ + ++ FL +L L + G+V++ RG Sbjct: 1 MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA +TI DV++ E + L V Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVEGPLASVRGERPEDVTYDGAAE-SLQQVWIAVRVNLR 119 Query: 120 DVLTQYSIECLVR 132 VL +I + Sbjct: 120 TVLEGVTIADVAA 132 >gi|284045053|ref|YP_003395393.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Conexibacter woesei DSM 14684] gi|283949274|gb|ADB52018.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei DSM 14684] Length = 130 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T ++ Y +R L P I+++A I FL ++ L +AG++++ RG + Sbjct: 4 ITTKSPYALRALTELGRLGGSGPVPIAELARRREIPVQFLEQLFAVLRRAGVLKSQRGVK 63 Query: 62 GGVRLCRPADQITILDVVKATEESF 86 GG R +IT+L++V+ + +F Sbjct: 64 GGYSFAREPGEITVLEIVELLDGAF 88 >gi|165937166|ref|ZP_02225731.1| HTH-type transcriptional regulator IscR [Yersinia pestis biovar Orientalis str. IP275] gi|165915029|gb|EDR33641.1| HTH-type transcriptional regulator IscR [Yersinia pestis biovar Orientalis str. IP275] Length = 118 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 46 QPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 L K G+V +VRG GG L + A I + V+ A +ES C K C C Sbjct: 1 SRLRKNGLVASVRGPGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRC 58 Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 ++ R L ++ LV N+ ++ Sbjct: 59 LTHTLWRDLSERISSFLNNITLAELVNNQDILE 91 >gi|121606333|ref|YP_983662.1| BadM/Rrf2 family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595302|gb|ABM38741.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas naphthalenivorans CJ2] Length = 179 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 11/142 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ ++ + + ++ A+ + P ++ I IS +L ++ L ++G+VE+ RG Sbjct: 1 MRLSTKSRFAVTAMIDIALQGNAGPISLADIGMRHKISVSYLEQLFSRLRQSGLVESTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKAL 115 GG L R ++ I++ D++ A E A K + G G +T L AL Sbjct: 61 PGGGYSLSRSSESISVADIIGAIE-----VHPHAPGKGEKAFPGQAGSGEWMTQELWAAL 115 Query: 116 NA-FFDVLTQYSIECLVRNRSS 136 NA + + S+ L + + Sbjct: 116 NAKMVEHMQSISLRHLASEQRA 137 >gi|312137813|ref|YP_004005149.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887152|emb|CBH46461.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 152 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH++ R D +R L+ A + + ++ + ++ FL +L L + G+V++ RG Sbjct: 1 MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG RL RPA +TI DV++ E + L V Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVEGPLASVRGERPEDVTYDGAAE-SLQQVWIAVRVNLR 119 Query: 120 DVLTQYSIECLVR 132 VL +I + Sbjct: 120 TVLEGVTIADVAA 132 >gi|34763033|ref|ZP_00144008.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742023|ref|ZP_04572504.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256845364|ref|ZP_05550822.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294785339|ref|ZP_06750627.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] gi|27887293|gb|EAA24389.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429671|gb|EEO39883.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718923|gb|EEU32478.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294487053|gb|EFG34415.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27] Length = 141 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L R IT+ D V+ E+ + + C A + C + + L K N Sbjct: 61 ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCIAG-QTSCSI-----IFGALEKVENN 114 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 F L + + + L ++ Sbjct: 115 FLKNLEKVNFKELTCPHVPLE 135 >gi|29377625|ref|NP_816779.1| rrf2 family protein [Enterococcus faecalis V583] gi|227517217|ref|ZP_03947266.1| Rrf2 family transcriptional regulator [Enterococcus faecalis TX0104] gi|227554593|ref|ZP_03984640.1| Rrf2 family transcriptional regulator [Enterococcus faecalis HH22] gi|229547972|ref|ZP_04436697.1| Rrf2 family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|293385289|ref|ZP_06631105.1| Rrf2 family protein [Enterococcus faecalis R712] gi|293389698|ref|ZP_06634142.1| Rrf2 family protein [Enterococcus faecalis S613] gi|294779157|ref|ZP_06744567.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis PC1.1] gi|300861490|ref|ZP_07107574.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis TUSoD Ef11] gi|307270509|ref|ZP_07551807.1| Rrf2 family protein [Enterococcus faecalis TX4248] gi|307273674|ref|ZP_07554902.1| Rrf2 family protein [Enterococcus faecalis TX0855] gi|307276598|ref|ZP_07557716.1| Rrf2 family protein [Enterococcus faecalis TX2134] gi|307284797|ref|ZP_07564953.1| Rrf2 family protein [Enterococcus faecalis TX0860] gi|307288388|ref|ZP_07568380.1| Rrf2 family protein [Enterococcus faecalis TX0109] gi|307292194|ref|ZP_07572058.1| Rrf2 family protein [Enterococcus faecalis TX0411] gi|312902009|ref|ZP_07761271.1| Rrf2 family protein [Enterococcus faecalis TX0470] gi|312905479|ref|ZP_07764593.1| Rrf2 family protein [Enterococcus faecalis TX0635] gi|312906640|ref|ZP_07765640.1| Rrf2 family protein [Enterococcus faecalis DAPTO 512] gi|312910899|ref|ZP_07769734.1| Rrf2 family protein (putative transcriptional regulator) [Enterococcus faecalis DAPTO 516] gi|312953278|ref|ZP_07772122.1| Rrf2 family protein [Enterococcus faecalis TX0102] gi|29345093|gb|AAO82849.1| rrf2 family protein [Enterococcus faecalis V583] gi|227075314|gb|EEI13277.1| Rrf2 family transcriptional regulator [Enterococcus faecalis TX0104] gi|227176270|gb|EEI57242.1| Rrf2 family transcriptional regulator [Enterococcus faecalis HH22] gi|229306848|gb|EEN72844.1| Rrf2 family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|291077489|gb|EFE14853.1| Rrf2 family protein [Enterococcus faecalis R712] gi|291080945|gb|EFE17908.1| Rrf2 family protein [Enterococcus faecalis S613] gi|294453790|gb|EFG22182.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis PC1.1] gi|295114481|emb|CBL33118.1| transcriptional regulator, BadM/Rrf2 family [Enterococcus sp. 7L76] gi|300848951|gb|EFK76704.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis TUSoD Ef11] gi|306496700|gb|EFM66253.1| Rrf2 family protein [Enterococcus faecalis TX0411] gi|306500688|gb|EFM70013.1| Rrf2 family protein [Enterococcus faecalis TX0109] gi|306503056|gb|EFM72313.1| Rrf2 family protein [Enterococcus faecalis TX0860] gi|306506708|gb|EFM75860.1| Rrf2 family protein [Enterococcus faecalis TX2134] gi|306509687|gb|EFM78729.1| Rrf2 family protein [Enterococcus faecalis TX0855] gi|306513090|gb|EFM81724.1| Rrf2 family protein [Enterococcus faecalis TX4248] gi|310627288|gb|EFQ10571.1| Rrf2 family protein [Enterococcus faecalis DAPTO 512] gi|310628783|gb|EFQ12066.1| Rrf2 family protein [Enterococcus faecalis TX0102] gi|310631208|gb|EFQ14491.1| Rrf2 family protein [Enterococcus faecalis TX0635] gi|311288767|gb|EFQ67323.1| Rrf2 family protein (putative transcriptional regulator) [Enterococcus faecalis DAPTO 516] gi|311290945|gb|EFQ69501.1| Rrf2 family protein [Enterococcus faecalis TX0470] gi|315026525|gb|EFT38457.1| Rrf2 family protein [Enterococcus faecalis TX2137] gi|315031868|gb|EFT43800.1| Rrf2 family protein [Enterococcus faecalis TX0017] gi|315034782|gb|EFT46714.1| Rrf2 family protein [Enterococcus faecalis TX0027] gi|315144200|gb|EFT88216.1| Rrf2 family protein [Enterococcus faecalis TX2141] gi|315146528|gb|EFT90544.1| Rrf2 family protein [Enterococcus faecalis TX4244] gi|315152847|gb|EFT96863.1| Rrf2 family protein [Enterococcus faecalis TX0031] gi|315154594|gb|EFT98610.1| Rrf2 family protein [Enterococcus faecalis TX0043] gi|315159542|gb|EFU03559.1| Rrf2 family protein [Enterococcus faecalis TX0312] gi|315161290|gb|EFU05307.1| Rrf2 family protein [Enterococcus faecalis TX0645] gi|315164374|gb|EFU08391.1| Rrf2 family protein [Enterococcus faecalis TX1302] gi|315167047|gb|EFU11064.1| Rrf2 family protein [Enterococcus faecalis TX1341] gi|315171134|gb|EFU15151.1| Rrf2 family protein [Enterococcus faecalis TX1342] gi|315172883|gb|EFU16900.1| Rrf2 family protein [Enterococcus faecalis TX1346] gi|315573196|gb|EFU85387.1| Rrf2 family protein [Enterococcus faecalis TX0309B] gi|315577066|gb|EFU89257.1| Rrf2 family protein [Enterococcus faecalis TX0630] gi|315581302|gb|EFU93493.1| Rrf2 family protein [Enterococcus faecalis TX0309A] gi|323479104|gb|ADX78543.1| transcriptional regulator family protein [Enterococcus faecalis 62] gi|327536296|gb|AEA95130.1| Rrf2 family transcriptional regulator [Enterococcus faecalis OG1RF] gi|329577825|gb|EGG59248.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis TX1467] Length = 141 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + I +L IA + + + + +++ L KAG++ ++RG Sbjct: 1 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALN 116 L + ++I++ ++ A E + + +C + + + SVL K Sbjct: 61 N-KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQ 117 Query: 117 AFFDVLTQYSIECLVRN 133 + L ++ ++ Sbjct: 118 KMEEELKSITLADVIHE 134 >gi|332878892|ref|ZP_08446607.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683243|gb|EGJ56125.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 148 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y A ++ RI ++A+A I FL KILQ LV+ ++ + +G Sbjct: 2 LSNSSKYAINAVIYLAANSSESKRIGVKEVADALHIPLPFLAKILQALVRKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + ++ VV+ E+ +C S + C C L + ++ + F Sbjct: 62 GGGFWLTDDEKEQPLMRVVEQIGEADKFIKCAMSLRP-CSDEKPCPLHTSVQPFRDNFRK 120 Query: 121 VLTQYSIECLVRN 133 LT+ SI Sbjct: 121 ELTENSIADFAEK 133 >gi|90422537|ref|YP_530907.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104551|gb|ABD86588.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisB18] Length = 154 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T G+ ++ A H D IAE IS L K+L+ LV+A ++E+VRG Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYAISLNHLAKVLRALVRARLIESVRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++T+LD++ E++ E AS + S L +LR Sbjct: 61 GGGYRFSGNPKRVTLLDIITLFEDTAPDLEQAASDDHE----ESRALHKMLRDIDGIAMT 116 Query: 121 VLTQYSIECLVR 132 L SI L++ Sbjct: 117 TLRSISITSLLK 128 >gi|320332910|ref|YP_004169621.1| BadM/Rrf2 family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754199|gb|ADV65956.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus maricopensis DSM 21211] Length = 138 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL ++H D+ IA + + + + I+ L +AG++ T RG G L R Sbjct: 8 AVHVLALISMHPDHARTSEAIAGSVGTNPVVVRNIIGLLRRAGLLRTQRGVAG-AVLTRT 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127 D +T+LDV +A + CP+ L V A A + L Q ++ Sbjct: 67 PDAVTLLDVYRAVNPPEHLFRLHEQPNPQCPVGSHIQDTLEVVFGTAQRALEERLGQVTL 126 Query: 128 ECLVRN 133 ++ + Sbjct: 127 VDVMAD 132 >gi|241890090|ref|ZP_04777388.1| transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863712|gb|EER68096.1| transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 138 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L+Y + D +A++ + + KIL L K ++E+ +G+ G + Sbjct: 3 TKFSVALHILIYIS-ETDKVVSSEILAKSVNTNSSHIRKILVVLKKGELIESQQGKTG-I 60 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122 L + IT+ ++ + ++ +CP+ + L V +A AF+ L Sbjct: 61 TLAKEPKDITLSEIYQIIYPDKYLVNIHEGANKECPVGLNIENLLQPVFNEAQEAFYKKL 120 Query: 123 TQYSIECLVRN 133 ++E L++ Sbjct: 121 EGKTLEKLIKE 131 >gi|84686886|ref|ZP_01014770.1| iron-sulfur cluster assembly transcription factor IscR, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665083|gb|EAQ11563.1| iron-sulfur cluster assembly transcription factor IscR, putative [Rhodobacterales bacterium HTCC2654] Length = 143 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ + ++ ++E IS +L ++ L +A +VE+VRG GG L RP+ Sbjct: 3 ALAELALQPEGTRMSLTDLSERQKISLPYLEQLFVKLRRAELVESVRGPGGGYMLARPSS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 +I + +++ A +E+ A + +T+ L + L+A + L Q + + Sbjct: 63 EIRVAEILAAVDETVSAMHTGAGASGGKSGTRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122 Query: 131 VRNR 134 V N Sbjct: 123 VHNE 126 >gi|294053610|ref|YP_003547268.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] gi|293612943|gb|ADE53098.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita akajimensis DSM 45221] Length = 150 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 I + Y A + +IAE + + + K+L L +AG+V+ RG GG L Sbjct: 11 AISAMSYLAKVYDGGETKISSKEIAEERQLPQTLVAKLLVTLSQAGLVDGARGPNGGYWL 70 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 + I + D+V+ E+ A C C C L L + L + S Sbjct: 71 AKAPKDIVLYDIVRLFEKGGSGAMCPFGPDW-CGNGEPCPLHDQLVELDGNLMSFLERTS 129 Query: 127 IE 128 + Sbjct: 130 LA 131 >gi|262366531|gb|ACY63088.1| hypothetical protein YPD8_2413 [Yersinia pestis D182038] Length = 149 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 VK G+V +VRG GG L + A I + V+ A +ES C K C Sbjct: 31 FHAYVKNGLVASVRGPGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNR 88 Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 C ++ R L ++ LV N+ ++ Sbjct: 89 CLTHTLWRDLSERISSFLNNITLAELVNNQDILE 122 >gi|83312490|ref|YP_422754.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82947331|dbj|BAE52195.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 136 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T + ++ A D ++IAE IS L K+L+ L + G+VE VRG Sbjct: 1 MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R + T+LD+++ E + D G GL VL + + Sbjct: 61 GGGYRFSGNRRRTTLLDIIQLFE-TIDPIRHGEREDGDDTAEGK-GLCQVLMEIEDTARA 118 Query: 121 VLTQYSIECLVR 132 +++ +++ Sbjct: 119 TFASITLDTMIK 130 >gi|46201310|ref|ZP_00055264.2| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 144 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%) Query: 9 YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + I ++ A H P + +I I +L + LQ +V+AGI+ VRG RGG RL Sbjct: 3 FAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQMVRAGILVGVRGPRGGYRLA 62 Query: 68 RPADQITILD---VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 R +I++ + VV+A E + + + ++ G + + L Sbjct: 63 RERRRISVGEVVRVVRALETAEDPYQDMPASEL-----GKQVIRPMWGDLTEEIMARLDA 117 Query: 125 YSIECLV 131 SI+ L Sbjct: 118 ISIDELC 124 >gi|228900538|ref|ZP_04064761.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 4222] gi|228968842|ref|ZP_04129804.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790905|gb|EEM38544.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228859089|gb|EEN03526.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 4222] Length = 146 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGQL 136 >gi|218680758|ref|ZP_03528655.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 122 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + ++ + A + +AE + + +L K LQ L +A +V+T G Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 GG RL R + +I LD+V+A E C C G C + ++ + Sbjct: 61 PSGGYRLARSSSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120 Query: 114 A 114 A Sbjct: 121 A 121 >gi|19704428|ref|NP_603990.1| hypothetical protein FN1093 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714688|gb|AAL95289.1| Hypothetical protein FN1093 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 142 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + + ++IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L + IT+ D V+ E+ + + C + C + + L K N Sbjct: 61 ANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVVG-QTSCSI-----IFEALEKVENN 114 Query: 118 FFDVLTQYSIECL 130 F + L + + + L Sbjct: 115 FLNNLEKVNFQEL 127 >gi|296328218|ref|ZP_06870749.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154730|gb|EFG95516.1| transcriptional regulator superfamily protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 142 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + + ++IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L + IT+ D V+ E+ + + C + C + + L K N Sbjct: 61 ANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVV-GQTSCSI-----IFEALEKVENN 114 Query: 118 FFDVLTQYSIECL 130 F + L + + + L Sbjct: 115 FLNNLEKVNFQEL 127 >gi|228907665|ref|ZP_04071522.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 200] gi|228852157|gb|EEM96954.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL 200] Length = 146 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGHL 136 >gi|228952322|ref|ZP_04114410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807318|gb|EEM53849.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 147 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 65 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEIILIQAQS 123 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 124 AMEEVLRNITMGQL 137 >gi|229155529|ref|ZP_04283637.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] gi|228627847|gb|EEK84566.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342] Length = 146 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + K++ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKLMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGQL 136 >gi|220925187|ref|YP_002500489.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949794|gb|ACL60186.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium nodulans ORS 2060] Length = 167 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%) Query: 10 GIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 + ++ A+H P +A + L +LQ LV+ G+++ +RG GG L R Sbjct: 32 AVAAVIDIALHARPQPVSAKALAARHGLPPRHLETVLQALVRHGLLKGLRGPHGGYELAR 91 Query: 69 PADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125 +I+ DV +A E + D P V + + +L A AF L Sbjct: 92 ERRRISAGDVARAVLSLEGP----------EPDKPAVAAALVDPLLAAAGQAFLATLDAV 141 Query: 126 SIECLVRNRSSIK 138 ++E L R + + Sbjct: 142 TVEDLCRQAEAAR 154 >gi|317501323|ref|ZP_07959526.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088357|ref|ZP_08337276.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897287|gb|EFV19355.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330408601|gb|EGG88067.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium 3_1_46FAA] Length = 144 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R I + +D +A + + + + KILQ L AG++E RG Sbjct: 1 MQISSRFTMAIHMFACIDTFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114 GGV + RP +QIT LDV KA E + + CP+ + + VL + Sbjct: 60 TGGVTITRPLEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEV 117 Query: 115 LNAFFDVLTQYSIECLVRN 133 A + L++ ++ + ++ Sbjct: 118 QKAMEEKLSEMTLADVKKD 136 >gi|317056183|ref|YP_004104650.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315448452|gb|ADU22016.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 143 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M++T DY +R+ + I++ C++ F KIL+ LV AG+V++ +G Sbjct: 1 MYITLEADYAVRITAAL-CRAEGKLDAKTISDQTCVTLRFSLKILRKLVSAGLVQSFKGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 +GG + IT+ V++A E + + C +C S C Sbjct: 60 QGGYMIAMEPKDITLRMVIEAIEGKYCFSRCL-QEDAECSRGASGKCPFQDAFCDITKMV 118 Query: 119 FDVLTQYSIECL 130 + L ++ L Sbjct: 119 SEKLDSHNFAEL 130 >gi|326693155|ref|ZP_08230160.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 165 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ + D+ P + +++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSSAVEQSLVVLVMLELQKDHAPVKSYLLSDRLQVSESYLKKTMRKLVVAGIVDAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-------ECFASHKIDCPLVGSCGLTSV-- 110 + GG +L RP IT+LDV +A E F + K D P+ + +V Sbjct: 61 KEGGFKLARPIANITLLDVYQAIEGDGSFIHSTQLADRIFLNQKSDKPVEDVQEVLNVTI 120 Query: 111 ------LRKALNAFFDVLTQYSIECLVRN 133 +A F L Y+I L+++ Sbjct: 121 TDVLTIFSEAEQDFKKRLKSYTIANLLQH 149 >gi|149179559|ref|ZP_01858095.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797] gi|148841602|gb|EDL56029.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797] Length = 141 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+K +Y +R + A P +AE + +L ++LQ L +GIV + G +G Sbjct: 2 LSKTHEYALRAVACLAGQPGKPASADFLAERTKVPRRYLTRVLQDLAASGIVSSKSGPKG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G L + ++TILD+V A + C K L C L + L + Sbjct: 62 GYELIAESGELTILDIVNAIAPLERIKACPLGLKSHTSL---CPLHAELDRVYAETEAAF 118 Query: 123 TQYSIECLVRNRSSIKKIFN 142 + +I+ L+ + S+I + + Sbjct: 119 ARVTIKQLLESTSTIIPLCD 138 >gi|300117525|ref|ZP_07055312.1| rrf2 family protein [Bacillus cereus SJ1] gi|298725060|gb|EFI65715.1| rrf2 family protein [Bacillus cereus SJ1] Length = 143 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + K++ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL +++ L Sbjct: 120 AMEEVLRNITMDQL 133 >gi|330684769|gb|EGG96463.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis VCU121] Length = 142 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L I ++ IA + + + + +I+ L +A +V+ RG Sbjct: 1 MKISSRFTVAVHILSLIQIESNQELSSKYIAGSVNTNPVVIRRIIGYLKRAQLVDMYRG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG+ L +P IT+LDV A + E + + ++C + + L +L +A + Sbjct: 60 NGGLYLLKPLSDITLLDVYHAVDVVEEGQLFQIHEDTNVNCVVGANIQGVLEIILMQAQD 119 Query: 117 AFFDVLTQYSIECLVRN 133 A VL + ++ +V Sbjct: 120 AMEGVLAKVTMNDIVNQ 136 >gi|315225080|ref|ZP_07866897.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944763|gb|EFS96795.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 145 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AIH+ +RI +AEA I FL KILQ L + ++ + +G Sbjct: 2 LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L Q ++ VV+ E+ C K +C C L + ++ + F Sbjct: 62 GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120 Query: 121 VLTQYSIECLVRN 133 LT+ SI + Sbjct: 121 ELTENSIASFAQK 133 >gi|42781070|ref|NP_978317.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|42736991|gb|AAS40925.1| rrf2 family protein [Bacillus cereus ATCC 10987] Length = 143 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 ALEEVLRNITMGQL 133 >gi|227431453|ref|ZP_03913502.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352819|gb|EEJ42996.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 150 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 8/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + ++E +SE +L K ++ LV A +++ + Sbjct: 1 MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLGVSESYLKKTMRKLVVANLIKAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRK 113 + GG +L R + IT+LDV +A E S +A+ K + G+ + S++ + Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIEGEDSFIHSTQLADRVFPAKTA-VVEGTKEVLSIVYE 119 Query: 114 ALNAFFDVLTQYSIECLV 131 A F L + SI L+ Sbjct: 120 AEKDFKKRLKRTSIADLL 137 >gi|144901312|emb|CAM78176.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 140 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + + P IA + + + + ++L L KAG+V ++RG GG L + Sbjct: 10 AVHTCTLLGMSDGQPLTSDWIAGSVNTNPVVIRRLLSSLAKAGLVTSIRGSNGGSVLAQL 69 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127 + IT+LD+ +A +E A CP+ L V+ +A A VL+ + Sbjct: 70 PEAITLLDIQRAVDEDTEPALHNQPPNQKCPVGRGIQPVLRRVIDRAEAAREAVLSTTLL 129 Query: 128 ECLV 131 ++ Sbjct: 130 AEVI 133 >gi|254442216|ref|ZP_05055692.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] gi|198256524|gb|EDY80832.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] Length = 139 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 I L Y A + + IA + + + K+L L +AG+V G +GG L Sbjct: 11 AIMALCYLAEGFDNGVTRHTSRDIATNRNLPQPIVAKLLVLLSQAGLVLGTPGPKGGYWL 70 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 R IT+ D+V E C C C L L + D L + + Sbjct: 71 ARDPQDITLYDIVSHFERDGERISC-PKGIGKCDESNPCALHQKLIDLDHQLVDFLHENT 129 Query: 127 IECLVR 132 +E V Sbjct: 130 LEAFVE 135 >gi|23014795|ref|ZP_00054594.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 136 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T + ++ A D ++IAE IS L K+L+ L + G+VE VRG Sbjct: 1 MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R + T+LD+++ E + D G GL VL + + Sbjct: 61 GGGYRFSGNRRRTTLLDIIQLFE-TIDPIRNGEREDGDDTAEGK-GLCQVLMEIEDTARA 118 Query: 121 VLTQYSIECLVR 132 +++ +++ Sbjct: 119 TFASITLDTMIK 130 >gi|196047005|ref|ZP_03114224.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225863879|ref|YP_002749257.1| rrf2 family protein [Bacillus cereus 03BB102] gi|196022109|gb|EDX60797.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225789070|gb|ACO29287.1| rrf2 family protein [Bacillus cereus 03BB102] Length = 143 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + K++ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSSLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHDITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGQL 133 >gi|251799818|ref|YP_003014549.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247547444|gb|ACT04463.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 141 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y A + IA+ + K++ L K+G V+T G GG RL Sbjct: 8 AVHSLVYLAYLPERMASSEMIADNVGTHSARVRKVMSGLRKSGFVDTREGAGGGYRLTID 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 D +T+ DV + + SF + C +DC + + + + A + + Sbjct: 68 PDVVTLGDVYRVMAQGSFIPSWCSGDPGMDCVVGSNMNQVMFGIFCTAEKQLEGYFSGIT 127 Query: 127 IECLVRN 133 I +++ Sbjct: 128 ISDVLKQ 134 >gi|328955220|ref|YP_004372553.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] gi|328455544|gb|AEB06738.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium glomerans PW2] Length = 164 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + +R L+ A H + QIA+ ISE +L IL LV+ G++ RG Sbjct: 1 MLVSTKGRHALRALVDLAEHQAAGYIPLKQIADRQSISEKYLESILSSLVQHGLLLGRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R GG RL R A + T++ V+ TE S C C C ++ + Sbjct: 61 RGGGYRLARNARRCTVMSVLTLTEGSISAVPCLEGRSTGCHRASRCRTLAMWEGLDSLVR 120 Query: 120 DVLTQYSIECLVRNRS 135 L +I L+R+ Sbjct: 121 TYLEGVTIADLMRSPK 136 >gi|324998176|ref|ZP_08119288.1| transcriptional regulator [Pseudonocardia sp. P1] Length = 258 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 12/128 (9%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ R D+ + L + ++ A + L ++ L +AG+V + RG G Sbjct: 138 VSARLDHALAALAELVDADGDTVTCDAMSRARGVPLNSLVNVMLQLRRAGLVTSRRGCEG 197 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RL R AD+IT+ DVV+ATE + V + + + L Sbjct: 198 GYRLARRADEITVADVVRATEGAVAVLRGTGPASV------------LWADLERTVAEFL 245 Query: 123 TQYSIECL 130 T ++ L Sbjct: 246 TSRTLTDL 253 >gi|83644269|ref|YP_432704.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632312|gb|ABC28279.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 159 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L + DYG+ + ++ Q+A+ + + KI++ LV G+V + RG + Sbjct: 3 RLARLADYGLLIASSLEEPGKALVKLDQVADQTKLPIPTVRKIMKLLVDGGVVHSERGVK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L A I+I +++A E + +C A ++ C ++ +C + S ++ Sbjct: 63 GGYCLSDAAYNISIARILRAVEGGVALTDCCAEERV-CDVMHACTVHSNWSVINQTVSEI 121 Query: 122 LTQYSIECLVRN 133 + ++ + R Sbjct: 122 FERLTLRDMSRR 133 >gi|229069492|ref|ZP_04202781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] gi|228713631|gb|EEL65517.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] Length = 147 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 5 MKISSRFSIAVHILSILKNNPSSHCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 65 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 124 AMEEVLRNITMGQL 137 >gi|256819570|ref|YP_003140849.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga ochracea DSM 7271] gi|256581153|gb|ACU92288.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga ochracea DSM 7271] Length = 145 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AIH+ +RI +AEA I FL KILQ L + ++ + +G Sbjct: 2 LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L Q ++ VV+ E+ C K +C C L + ++ + F Sbjct: 62 GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120 Query: 121 VLTQYSIECLVRN 133 L++ SI + Sbjct: 121 ELSENSIASFAQK 133 >gi|210617663|ref|ZP_03291694.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787] gi|210149210|gb|EEA80219.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787] Length = 147 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 64/140 (45%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + ++ +A + ++ + + KIL L AG+V+ RG Sbjct: 1 MQISSRFTIAVHIFACIDTFKEEFKLTSEFLAASINVNPVIIRKILSQLKAAGLVKVQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113 GG + +P D+IT D+ +A E E + + CP+ + + +VL + Sbjct: 61 -SGGASIAKPLDEITFFDIYQAVECVEHGELFHFHENPNQKCPVGRN--IHNVLDGKLIQ 117 Query: 114 ALNAFFDVLTQYSIECLVRN 133 +A + L + ++E ++++ Sbjct: 118 IQDALENELGKITLEDVMKD 137 >gi|291010047|ref|ZP_06568020.1| transcriptional regulator Rrf2 family protein, putative [Saccharopolyspora erythraea NRRL 2338] Length = 147 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ R+ I L A + ++IA++ + + + +IL L A +V + GR G Sbjct: 4 LSSRSAVAIHALAMLAHRREGSLTSAEIADSLGSNPVLVRRILGRLRNAELVWSTEGRGG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 G L R IT+ D A EE + C + + G L + A A + Sbjct: 64 GWSLARAPRDITLYDAYAAVEEGQIFSRHTHPPSGVCEVGRNIGELLDIEFQSAERALEE 123 Query: 121 VLTQYSIECLVRN 133 L + +I L++ Sbjct: 124 QLGRTTIAGLLQQ 136 >gi|229184155|ref|ZP_04311364.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] gi|228599270|gb|EEK56881.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1] Length = 146 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + K++ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSSLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHDITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGQL 136 >gi|229079125|ref|ZP_04211674.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2] gi|228704142|gb|EEL56579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2] Length = 146 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSHCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEIILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGQL 136 >gi|300697092|ref|YP_003747753.1| Rrf2 family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073816|emb|CBJ53337.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum CFBP2957] Length = 143 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPAD+IT+LDV + E +A + C + L V +A +A Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119 Query: 119 FDVLTQYSIECLVRN 133 L +I ++ Sbjct: 120 EAELAAQTIAGMLAE 134 >gi|83952084|ref|ZP_00960816.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius nubinhibens ISM] gi|83837090|gb|EAP76387.1| iron-sulfur cluster assembly transcription factor IscR, putative [Roseovarius nubinhibens ISM] Length = 143 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ + + ++ IS +L ++ L +A +V +VRG GG RL RP Sbjct: 3 ALADIAMQEANGLVTLGDVSRRQDISLPYLEQLFVKLRRAELVASVRGPGGGYRLARPPS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 +I + +++ A +E+ A + +T+ L + L+A + L Q + + Sbjct: 63 EIRVAEILAAVDETVDALHKGAGASGAASGSRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122 Query: 131 VRNR 134 + N Sbjct: 123 IENE 126 >gi|312112835|ref|YP_004010431.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] gi|311217964|gb|ADP69332.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium vannielii ATCC 17100] Length = 149 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L T + I ++ A IAE IS L K+L+ L + GIV+ RG Sbjct: 1 MRLQVATRHAIFSVLELAAQPHRQMSAVDIAEKYAISPNHLAKVLRTLGREGIVDASRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++T+ D++ E F + L V+ + + Sbjct: 61 GGGYRFVGNPKRLTLFDIIAIFEPIGPTTGGFEAGDDTSEGQA---LRLVMNEIEDTARA 117 Query: 121 VLTQYSIECLVR 132 L+ +I+ +++ Sbjct: 118 TLSSITIDTMLK 129 >gi|218662716|ref|ZP_03518646.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli IE4771] Length = 128 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 7/128 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + I + + + + +AE +S +L K LQ L AGI++TV G Sbjct: 1 MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113 RGG RL + ++I++LD++ A E C + P+ C +++ + + Sbjct: 61 PRGGYRLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120 Query: 114 ALNAFFDV 121 A + Sbjct: 121 AERVYRAE 128 >gi|331082894|ref|ZP_08332015.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400035|gb|EGG79688.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium 6_1_63FAA] Length = 311 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 + +I+ L K VE V+G+ GG RL + I D+++ TE C + C Sbjct: 211 IERIMPVLSKNHYVEGVQGKGGGYRLTKEPKDYRIGDILRLTEGQLVPVACLECNAETCK 270 Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 C + ++ + + ++ L++ Sbjct: 271 RANICKTLPMWKEFHHMVNNYFDNITLSDLMK 302 >gi|271970217|ref|YP_003344413.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513392|gb|ACZ91670.1| putative transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 157 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L T++ + A + +Q+A+ + +L K L+ LV+AG++ G Sbjct: 1 MKLPVSTEWVLHCATTLAQLDPGASASAAQLAQYYDLPAAYLTKQLKSLVRAGLLAATTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111 RGG RL RPA +IT+L +V+A + + EC A +C +C L + Sbjct: 61 PRGGFRLARPASEITLLQIVEAVDGTSPPYECREIRQQGRGALAPEECRR--TCILAEKM 118 Query: 112 RKALNAFFDVLTQYSIECLVR 132 A A+ L + ++ ++ Sbjct: 119 ADAHEAWRRTLAEVTLAGILA 139 >gi|324325977|gb|ADY21237.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 143 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGHL 133 >gi|148379309|ref|YP_001253850.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|153932711|ref|YP_001383685.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 19397] gi|153936293|ref|YP_001387233.1| putative transcriptional regulator [Clostridium botulinum A str. Hall] gi|153940905|ref|YP_001390690.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|168179993|ref|ZP_02614657.1| putative transcriptional regulator [Clostridium botulinum NCTC 2916] gi|148288793|emb|CAL82877.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928755|gb|ABS34255.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 19397] gi|152932207|gb|ABS37706.1| putative transcriptional regulator [Clostridium botulinum A str. Hall] gi|152936801|gb|ABS42299.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|182669084|gb|EDT81060.1| putative transcriptional regulator [Clostridium botulinum NCTC 2916] gi|295318764|gb|ADF99141.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] gi|322805649|emb|CBZ03214.1| rrf2 family transcriptional regulator [Clostridium botulinum H04402 065] Length = 137 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + DV++A + + C + + G+C + L K Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKL 120 Query: 119 FDVLTQYSIECLVRN 133 L + + ++ Sbjct: 121 VSELEAVNFQEILDK 135 >gi|322383829|ref|ZP_08057576.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae B-3650] gi|321151645|gb|EFX44718.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae B-3650] Length = 132 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L A++++ +A + + + + +I+ L KAG+V+ VR GG L + Sbjct: 1 MHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSGTGGAYLLKSL 59 Query: 71 DQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 D+IT+LD+ KA + E + + +CP+ + L VL +A A VL + Sbjct: 60 DEITLLDIYKAVDVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQEAMEQVLKDIT 119 Query: 127 IECLV 131 ++ LV Sbjct: 120 MDELV 124 >gi|313205515|ref|YP_004044692.1| transcriptional regulator, badm/rrf2 family [Riemerella anatipestifer DSM 15868] gi|312444831|gb|ADQ81186.1| transcriptional regulator, BadM/Rrf2 family [Riemerella anatipestifer DSM 15868] gi|315023387|gb|EFT36397.1| rrf2 family protein (putative transcriptional regulator) [Riemerella anatipestifer RA-YM] gi|325335053|gb|ADZ11327.1| Predicted transcriptional regulator [Riemerella anatipestifer RA-GD] Length = 144 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR + A N+ + +I+ + F+ KILQ L KA I+E+VRG Sbjct: 2 FSKACEYAIRSAICIAQKRLNNQRVNVKEISASIDAPVAFIAKILQQLCKANIIESVRGH 61 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + +I I D++ A + S +C K +C V C + + R+ Sbjct: 62 QGGFSIDIEQLKEIKIYDIIVAIDGSGLFTKCGLGLK-ECSSVNPCPVHNDFREIKAKLE 120 Query: 120 DVLTQYSIECLV 131 ++ YS+ L Sbjct: 121 NITKSYSLYDLA 132 >gi|329922262|ref|ZP_08277964.1| transcriptional regulator [Paenibacillus sp. HGF5] gi|328942299|gb|EGG38569.1| transcriptional regulator [Paenibacillus sp. HGF5] Length = 147 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE G Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60 Query: 61 RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCGLT--SVLRKA 114 G +L +P IT+LD+ A E S + + CP+ V A Sbjct: 61 AG-AKLAKPPSGITLLDIYHAVHVVQEGS--LFGIHENSDTKCPVGKHIQTAIVPVFSAA 117 Query: 115 LNAFFDVLTQYSIECLVRN 133 A D L + ++E +VR Sbjct: 118 QKAMEDTLHEVNLEQIVRE 136 >gi|152981839|ref|YP_001353596.1| transcriptional regulator [Janthinobacterium sp. Marseille] gi|151281916|gb|ABR90326.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 148 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + LM+ A H P +A + + + + + L G+V + RG Sbjct: 1 MKKNSKLSASLHALMHMA-HQQEPLTSETLAVCMHTNPVVVRRTMAGLRDNGLVTSGRGH 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 GG L RP +IT+ DV A E + C L S L +A + F Sbjct: 60 GGGWALARPVAEITLRDVYTALNEPVPLQ--LEEDAPVCQLEHAVSTALNHAYAEAESLF 117 Query: 119 FDVLTQYSIECL 130 L ++ L Sbjct: 118 ARSLANITLADL 129 >gi|313895665|ref|ZP_07829221.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp. oral taxon 137 str. F0430] gi|320528904|ref|ZP_08029996.1| Rrf2 family protein [Selenomonas artemidis F0399] gi|312975791|gb|EFR41250.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp. oral taxon 137 str. F0430] gi|320138534|gb|EFW30424.1| Rrf2 family protein [Selenomonas artemidis F0399] Length = 147 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + YGI +++ A + D P I I+E IS+++L ++ L ++ +V +++ Sbjct: 1 MKISAKGRYGIAAMVFLARNYDASSPITIISISEHLGISKIYLEQVFSLLKRSRLVNSIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G +GG +L R +I DV+ + E + E + V + + Sbjct: 61 GSQGGYQLSRHPREINAYDVLSSIE--ISLIEKAGPATDKMDALNRMLSRCVFDELDRSI 118 Query: 119 FDVLTQYSIECLV 131 + L S+E L+ Sbjct: 119 LETLRGISLEDLL 131 >gi|213962009|ref|ZP_03390274.1| Rrf2 family protein [Capnocytophaga sputigena Capno] gi|213955362|gb|EEB66679.1| Rrf2 family protein [Capnocytophaga sputigena Capno] Length = 145 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y A+H R+ IAEA I FL KILQ L + ++ + +G Sbjct: 2 LSNSSKYAINAVIYLALHASPTKRLAPKDIAEALHIPTSFLAKILQTLARKKVISSNKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L +++VVK E+ C K +C C L + ++ + F Sbjct: 62 GGGFWLTDEEKAAPLMNVVKQIGEAEKFTSCAMGFK-ECSSEKPCPLHTSVQPFRDNFMR 120 Query: 121 VLTQYSIECLVRN 133 LT SI + Sbjct: 121 ELTNNSIASFAQK 133 >gi|315612720|ref|ZP_07887631.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315314830|gb|EFU62871.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 145 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +++ A+ + D +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIATHMMIIIALQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + I++LDV +A E +S + + +CP+ + + +VL Sbjct: 61 -TGGTEIIKDLKDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHAVLDQKLF 117 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 A + L Q S+ +V + + Sbjct: 118 DVQAAMENQLRQTSLAQVVADAQN 141 >gi|315649061|ref|ZP_07902154.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315275496|gb|EFU38851.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 148 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE G Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGISTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116 G +L + +IT+LD+ A + + + CP+ V A Sbjct: 61 AG-AKLAKHPAEITLLDIYHAVHVVQEDSLFSIHENSDTKCPVGKHIQTAIVPVFSAAQK 119 Query: 117 AFFDVLTQYSIECLVRN 133 A + L + S+E ++RN Sbjct: 120 AMENTLHEVSLEEIIRN 136 >gi|206977492|ref|ZP_03238387.1| rrf2 family protein [Bacillus cereus H3081.97] gi|206744342|gb|EDZ55754.1| rrf2 family protein [Bacillus cereus H3081.97] Length = 143 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + K++ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGQL 133 >gi|260881170|ref|ZP_05403779.2| Rrf2 family protein [Mitsuokella multacida DSM 20544] gi|260849700|gb|EEX69707.1| Rrf2 family protein [Mitsuokella multacida DSM 20544] Length = 159 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + A + + +A + ++ + + K + L KAG+++ RG Sbjct: 8 MQISSRFTIAVHIFACIEAFGDQHKLTSDFLAGSVNVNPVIIRKTMSQLQKAGLIKVARG 67 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 GG+++ RP D+IT+ DV +A E + + + CP+ + L L A Sbjct: 68 -TGGIKITRPLDEITLFDVFQAVEALDHKQLFHFHDNPNPSCPVGRNIHNILDGHLHDAQ 126 Query: 116 NAFFDVLTQYSIECLVRN 133 A L + ++ + + Sbjct: 127 RALEQELAKTTLADIQKE 144 >gi|167748622|ref|ZP_02420749.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662] gi|167651936|gb|EDR96065.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662] Length = 145 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + + +L+ A + P + ++E +S+ +L KI++ LV AG+V++ G Sbjct: 1 MKIKGSLEQAVCILLVIAHTKGHAPVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 ++GG L R I++LDV +A E + + + + + SV + Sbjct: 61 KKGGFVLKRAPKNISLLDVFEAIESTAPFLSTTNLVDKVFPKEKMIAHEKEQQIISVFTR 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A+ L+Q++++ +V Sbjct: 121 AEQAYRQSLSQFTLDHVVAE 140 >gi|116619016|ref|YP_819387.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097863|gb|ABJ63014.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 150 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + ++E +SE +L K ++ LV A +++ + Sbjct: 1 MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLEVSESYLKKTMRKLVVANLIKAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLR---KA 114 + GG +L R + IT+LDV +A E A + G VL +A Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIEGEDSFIHSTQLADRVFPAKTAVAEGTKEVLSIVYEA 120 Query: 115 LNAFFDVLTQYSIECLV 131 F L + SI L+ Sbjct: 121 EKDFKKRLKRTSIADLL 137 >gi|150021434|ref|YP_001306788.1| BadM/Rrf2 family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793955|gb|ABR31403.1| transcriptional regulator, BadM/Rrf2 family [Thermosipho melanesiensis BI429] Length = 148 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE-ACCISELFLFKILQPLVKAGIVETVRG 59 M +T +++Y +R+L+ ++ + I++ I F KIL LV +GI+ + RG Sbjct: 1 MAVTMKSEYALRLLLLLSLDEKLVSTRELISKCKADIPYEFAQKILSRLVSSGILSSSRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG +L + +ITI D+V A ++ V CF C + + + + F Sbjct: 61 KFGGYKLTKKPSEITIYDIVSAVDDISTVITCFVEPGKMKLEPEICTVNEIWQIVMEKFS 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 L ++E L +S +KK Sbjct: 121 KSLMSVTLEDL--KKSYLKK 138 >gi|300777499|ref|ZP_07087357.1| possible transcription regulator [Chryseobacterium gleum ATCC 35910] gi|300503009|gb|EFK34149.1| possible transcription regulator [Chryseobacterium gleum ATCC 35910] Length = 143 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR L++ A + I I+ E F+ KILQ L + G V++ +G Sbjct: 2 FSKTCEYAIRALIFIAQKSKDGSRIGIKDISSGIDSPEYFIAKILQDLSRKGFVQSAKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + ++ D+V+ + + C K +C C + + + Sbjct: 62 NGGFYMDDANLEQSVADIVREIDGDKLFSGCGLGLK-ECSEDHPCPIHNDFKHIRQEIKT 120 Query: 121 VLTQYSIECLVRN 133 +L + I+ V N Sbjct: 121 MLEESRIQLFVEN 133 >gi|73541761|ref|YP_296281.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha JMP134] gi|72119174|gb|AAZ61437.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha JMP134] Length = 144 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A ++ P S IA + + + +++ L +AG+V ++ G Sbjct: 1 MTTSSRFAVAVHILTLLASASE-PLPSSLIAGSVGTNPALIRRLIGQLAEAGLVTSIMGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPA++IT+LDV +A E + + ++ C + L V +A +A Sbjct: 60 TGGSTLSRPAERITLLDVFRAVETTALITLHQSAPNPACMVGREITGALRQVADRAQSAM 119 Query: 119 FDVLTQYSIECLVRN 133 + L + +I ++ + Sbjct: 120 DNALAEITIASMLAD 134 >gi|293364946|ref|ZP_06611663.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307703197|ref|ZP_07640143.1| transcriptional regulator family protein [Streptococcus oralis ATCC 35037] gi|291316396|gb|EFE56832.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307623272|gb|EFO02263.1| transcriptional regulator family protein [Streptococcus oralis ATCC 35037] Length = 145 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +++ A+ + D +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIATHMMIIIAMQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + +I++LDV +A E +S + + +CP+ + + VL Sbjct: 61 -TGGTEIIKDLQEISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHGVLDQKLF 117 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 A + L Q S+ +V + + Sbjct: 118 DVQAAMENQLHQTSLAQVVADAQN 141 >gi|325473526|gb|EGC76719.1| hypothetical protein HMPREF9353_02145 [Treponema denticola F0402] Length = 139 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + L+ D I+ + ++ + + KIL L KAG+VET G Sbjct: 1 MKISVRFTAAVHTLLCIRYFEKDMRVTSDFISASTGVNAVIIRKILLQLQKAGLVETAAG 60 Query: 60 RRGGVRLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114 GG L + AD+IT+LDV A EE + CP+ L + L A Sbjct: 61 V-GGSHLAQAADKITLLDVYNAINEGEEERDIFNFHPKPNSKCPVGSKIHLVLDTKLDDA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A D L + +I L ++ Sbjct: 120 QKAMKDSLNKTTIADLSKD 138 >gi|228985043|ref|ZP_04145211.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774731|gb|EEM23129.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 147 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + K++ L +AG V RG Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 64 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 65 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 124 AMEEVLRNITMGQL 137 >gi|86131704|ref|ZP_01050301.1| transcriptional regulator [Dokdonia donghaensis MED134] gi|85817526|gb|EAQ38700.1| transcriptional regulator [Dokdonia donghaensis MED134] Length = 135 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+++T YG++ L + A + I +IA++ IS+ FL IL + KAG + + +G+ Sbjct: 2 LSRKTKYGLKALTFLAKKPENTTVLIQEIADSENISKKFLESILLSMRKAGYLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + I I V++ E + C F H DCP C L ++ + + Sbjct: 62 GGYYLIKSPEDIKISSVIRTLEGPIALLPCVSLNFYEHCDDCPKEEECSLHILMIEVRDQ 121 Query: 118 FFDVLTQYSIECLV 131 VL S+ L+ Sbjct: 122 TLKVLENKSLIDLI 135 >gi|229196161|ref|ZP_04322911.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293] gi|228587319|gb|EEK45387.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293] Length = 146 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + K++ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 123 AMEEVLRNITMGQL 136 >gi|144900811|emb|CAM77675.1| Rrf2-like transcriptional regulator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 136 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K T + ++ A +IA+ IS L K+L+ L +AG++E VRG Sbjct: 1 MKLQKATRCALFAILELAGDPGRQMSAHEIADKYGISTNHLAKVLRSLGRAGLLEAVRGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R + T+LDV++ E +A P G+ L VL + + Sbjct: 61 GGGYRFSGSVKRTTLLDVIQLFETIDPLARGEREDGDGTPGGGA--LCEVLTEIEDIARA 118 Query: 121 VLTQYSIECLVR 132 S+E +++ Sbjct: 119 TFASISLETMLK 130 >gi|320531098|ref|ZP_08032127.1| Rrf2 family protein [Selenomonas artemidis F0399] gi|320136680|gb|EFW28633.1| Rrf2 family protein [Selenomonas artemidis F0399] Length = 160 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 10/151 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ + D S+ ++ + + + +IL L +AG++ +RG Sbjct: 12 MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRIMRG 71 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113 R GG L RP +IT+ DV A E + + CP+ S + V L Sbjct: 72 REGGAYLMRPLSEITLADVFHAVESLGGDTLFSFHENPNPACPVGRS--IHDVLDNRLAD 129 Query: 114 ALNAFFDVLTQYSIECLVRN-RSSIKKIFNA 143 A + ++ + + R IK+ A Sbjct: 130 IQRAMERAMEGMTLANIAEDARQEIKRTAQA 160 >gi|296124045|ref|YP_003631823.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM 3776] gi|296016385|gb|ADG69624.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus DSM 3776] Length = 147 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 3/140 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++K +Y +R + A + ++A + +L +LQ L +AGIV++ G G Sbjct: 2 ISKTAEYALRTVACLASAREGIVLADELATRTQVPRRYLNTVLQDLGRAGIVKSKSGPGG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G L +++ILDV+ A + +C L C L + L KA Sbjct: 62 GHSLLVDPKELSILDVINAVSPLERIRQCPLGLPSHTEL---CPLHAELDKAYAHTEKAF 118 Query: 123 TQYSIECLVRNRSSIKKIFN 142 ++ ++ + + + + Sbjct: 119 AGVTLGQVLASTKGVIPLCD 138 >gi|126734658|ref|ZP_01750404.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] gi|126715213|gb|EBA12078.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] Length = 125 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A+ D P IA+ + + KI+ L +AGI + G +GG L R +QIT+L Sbjct: 1 MAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRAGITTSQPGAKGGTHLARSPEQITLL 60 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFFDVLTQYSIECLVR 132 DV +A + A CP+ + VL + A A L SI + Sbjct: 61 DVYRAVDTQEIFANPNCPPDASCPIGS--RIGPVLDEIKANATQAMEAELAAVSIAGIAG 118 Query: 133 NRSSI 137 + Sbjct: 119 KLKPL 123 >gi|83749686|ref|ZP_00946666.1| Rrf2 family protein [Ralstonia solanacearum UW551] gi|207739012|ref|YP_002257405.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum IPO1609] gi|83723648|gb|EAP70846.1| Rrf2 family protein [Ralstonia solanacearum UW551] gi|206592383|emb|CAQ59289.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum IPO1609] Length = 143 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPAD+IT+LDV + E +A + C + L V +A +A Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119 Query: 119 FDVLTQYSIECLVRN 133 L +I ++ Sbjct: 120 ETELAAQTIAGMLAE 134 >gi|254303065|ref|ZP_04970423.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323257|gb|EDK88507.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 142 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + + ++IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDRNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117 GG +L + IT+ D V+ E+ + + C + C + + L K N Sbjct: 61 ANGGYKLNKEPKDITLRDAVETIEDEIIIKDRSCVV-GQTSCSI-----IFKALEKVENN 114 Query: 118 FFDVLTQYSIECL 130 F L + + + L Sbjct: 115 FLSNLEKVNFQEL 127 >gi|207724271|ref|YP_002254668.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum MolK2] gi|206589487|emb|CAQ36448.1| cog1959, predicted transcriptional regulator protein [Ralstonia solanacearum MolK2] Length = 143 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPAD+IT+LDV + E +A + C + L V +A +A Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACDVGREITGVLERVTARAQSAM 119 Query: 119 FDVLTQYSIECLVRN 133 L +I ++ Sbjct: 120 ETELAAQTIAGMLAE 134 >gi|313682502|ref|YP_004060240.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313155362|gb|ADR34040.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 141 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 11 IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 IR ++ + RI +I+E+ + FL K LQ LV AGI+ ++RG GGV L +P Sbjct: 10 IRAAVWLSTKEIGKFYRIQEISESLELPYHFLSKSLQKLVHAGILVSLRGASGGVSLSKP 69 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A +IT+L ++ A + S F C DC C L + ++ + + Sbjct: 70 ASEITLLSIIDAVDGSVFFDTCVLGIG-DCEAEKPCALHAQWDVWRQEMLEMYSAMRLSE 128 Query: 130 LVRN 133 + + Sbjct: 129 ITDD 132 >gi|37520366|ref|NP_923743.1| hypothetical protein glr0797 [Gloeobacter violaceus PCC 7421] gi|35211359|dbj|BAC88738.1| glr0797 [Gloeobacter violaceus PCC 7421] Length = 140 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L+ +++Y + ++ P +I +IA+ I + +L ++L L + G+V++ R Sbjct: 1 MELSAKSEYALLAMLQLALGHGKGEPMQIKEIAQCQSIPDRYLEQLLADLRRHGLVKSQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G RGG L R I +L++V+ E + L S + ++ A Sbjct: 61 GARGGYLLAREPFAIHLLEIVQCIEGQD------ETETPPNTLEAS-IVREAWDESRRAA 113 Query: 119 FDVLTQYSIECLVR 132 VL ++++ L Sbjct: 114 EQVLKGHTLQKLCE 127 >gi|304407788|ref|ZP_07389439.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304343271|gb|EFM09114.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 142 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 7/127 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y A + +A+ + K++ L K+G V T G GG RL Sbjct: 8 AVHSLVYLAYVPERMASSEALADNVGTHPARIRKVMSVLRKSGYVATREGAGGGYRLTAE 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQ 124 +++++ D+ + + S + C ++DC + + + V+ A Sbjct: 68 PNEVSLGDIYRVMAQGSLMPSWCSGDPEMDCVVGSN--MKQVMFGIFCTAEKRLETHFNA 125 Query: 125 YSIECLV 131 +I ++ Sbjct: 126 ITIRDVL 132 >gi|317470881|ref|ZP_07930261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|316901625|gb|EFV23559.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 145 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 7/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + + +L+ A + P + ++E +S+ +L KI++ LV AG+V++ G Sbjct: 1 MKIKGSLEQAVCILLVIAHTRGHAPVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 ++GG L R I++LDV +A E + + + + + SV + Sbjct: 61 KKGGFVLKRAPKNISLLDVFEAIESTAPFLSTTNLVDKVFPKEKMIAHEKEQQIISVFTR 120 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A+ L+Q++++ +V Sbjct: 121 AEQAYRQSLSQFTLDHVVAE 140 >gi|188585903|ref|YP_001917448.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350590|gb|ACB84860.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 144 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 4/131 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R+ + + +Y A++ + + +++A ISE +L ++ PL KA I+ + RG Sbjct: 1 MKVSTRSKWALACSLYYAVNYSKEVIPLKTVSKALGISEKYLEQLSIPLKKADILASTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG +L ++IT+ V+ + E E + + L+ + + Sbjct: 61 TQGGYKLKYHPEKITVYQVLSSIE-PIHFGEDASDQAGEKELLSV--TSEFWDELSQDLI 117 Query: 120 DVLTQYSIECL 130 L Q +++ L Sbjct: 118 KQLNQITLDDL 128 >gi|194014249|ref|ZP_03052866.1| Rrf2 family protein [Bacillus pumilus ATCC 7061] gi|194013275|gb|EDW22840.1| Rrf2 family protein [Bacillus pumilus ATCC 7061] Length = 137 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R + +L + A + IAE+ + + K++ L +AG++E RG Sbjct: 3 QISNRYPIAVHILSFIAGVQKE-CTGNFIAESVNSNPAIVRKMMAMLKRAGLIEIRRGVG 61 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117 G L RPA++IT+LDV +A + E + F I CP+ + L S L++A +A Sbjct: 62 GAY-LKRPAEEITLLDVYRAVDVSEDEELFN-FHQPVIACPIGQAMDTRLRSELKEAQSA 119 Query: 118 FFDVLTQYSIECLVRNRS 135 + L Q +I+ L+ Sbjct: 120 LENHLKQVTIQQLLTEAE 137 >gi|47568316|ref|ZP_00239018.1| rrf2 family protein [Bacillus cereus G9241] gi|47555009|gb|EAL13358.1| rrf2 family protein [Bacillus cereus G9241] Length = 143 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L ++ +AE+ + + + K++ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNSSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A +VL ++ L Sbjct: 120 AMEEVLRNITMGQL 133 >gi|226948610|ref|YP_002803701.1| putative transcriptional regulator [Clostridium botulinum A2 str. Kyoto] gi|226843148|gb|ACO85814.1| putative transcriptional regulator [Clostridium botulinum A2 str. Kyoto] Length = 137 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV+++ + I+E + FL K+L+ L K+ IV + RG Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSRIVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + DV++A + + C + + G+C + L K F Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKF 120 Query: 119 FDVLTQYSIECLVRN 133 L + + ++ Sbjct: 121 VSELEAVNFQEILDK 135 >gi|261408945|ref|YP_003245186.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285408|gb|ACX67379.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 150 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE G Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60 Query: 61 RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCGLT--SVLRKA 114 G +L +P IT+LD+ A E S + + CP+ V A Sbjct: 61 AG-AKLAKPPSGITLLDIYHAVHVVQEGS--LFGIHENSDAKCPVGKHIQTAIVPVFSAA 117 Query: 115 LNAFFDVLTQYSIECLVRN 133 A D L + ++E +VR Sbjct: 118 QKAMEDTLHEVNLEQIVRK 136 >gi|300312800|ref|YP_003776892.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075585|gb|ADJ64984.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 147 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L++ D P +IA + + + + L +AGIV + +G Sbjct: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118 GG L RP ++I++L V +A V C + + L V+ +A Sbjct: 61 GGGWSLARPMEEISLLQVQQAL-GERLVTLGAREESPGCLVEIAVNRALDDVMEEANRIL 119 Query: 119 FDVLTQYSIECLVRN 133 L ++ L ++ Sbjct: 120 DQRLAGITLAALAQD 134 >gi|228933254|ref|ZP_04096110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826415|gb|EEM72192.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 146 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122 Query: 117 AFFDVLTQYSIECL 130 A +VL + L Sbjct: 123 AMEEVLRNIKMGQL 136 >gi|291523912|emb|CBK89499.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale DSM 17629] gi|291528627|emb|CBK94213.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale M104/1] Length = 141 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 9/136 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R I + +D +A + + + + KILQ L AG++E RG Sbjct: 1 MQISSRFTMAIHMFACIDTFSDQKMTSDFMAASIGTNPVIIRKILQQLKAAGLIEVARG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114 GGV + RP +QIT LDV KA E + + CP+ + + VL + Sbjct: 60 TGGVTITRPLEQITFLDVYKAVECAPDEQLFHFHENPNQKCPVGKN--IHHVLDKRLLEV 117 Query: 115 LNAFFDVLTQYSIECL 130 A + L++ ++ + Sbjct: 118 QRAMEEKLSEMTLADV 133 >gi|226357828|ref|YP_002787568.1| transcriptional regulator,Rrf2 family [Deinococcus deserti VCD115] gi|226320071|gb|ACO48064.1| putative transcriptional regulator,Rrf2 family [Deinococcus deserti VCD115] Length = 138 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL ++ D IA + + + + ++ L +AG+++T +G G L R Sbjct: 8 AVHVLALINMYPDSARTSEDIAASIGTNPVVVRNVIGHLRRAGLLDTRQGVAG-AHLTRA 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127 IT+LDV +A V + CP+ LT V +A A L ++ Sbjct: 67 PRDITLLDVYRAVNAPASVFKLHEQPNPRCPVGSRIQGSLTQVFGEAQGALEAHLASLTL 126 Query: 128 ECLVRN 133 E + + Sbjct: 127 EDVTGD 132 >gi|168184147|ref|ZP_02618811.1| putative transcriptional regulator [Clostridium botulinum Bf] gi|182672686|gb|EDT84647.1| putative transcriptional regulator [Clostridium botulinum Bf] Length = 137 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + DV++A + + C + + G+C + L K Sbjct: 61 VKGGYALNKQPKDINLRDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRKL 120 Query: 119 FDVLTQYSIECLVRN 133 L + + ++ Sbjct: 121 VSELEAVNFQEILDE 135 >gi|331266849|ref|YP_004326479.1| Rrf2 family protein; transcriptional regulator,putative [Streptococcus oralis Uo5] gi|326683521|emb|CBZ01139.1| Rrf2 family protein; transcriptional regulator,putative [Streptococcus oralis Uo5] Length = 145 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +++ A+ + + +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIATHMMIIIAMQDTESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + I++LDV +A E +S + + +CP+ + + VL Sbjct: 61 -TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHGVLDQKLF 117 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 A + L Q S+ +V + + Sbjct: 118 DVQAAMENQLRQTSLAQVVADAQN 141 >gi|268679955|ref|YP_003304386.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] gi|268617986|gb|ACZ12351.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum DSM 6946] Length = 137 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 3 LTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + YG+ + ++ A + P +I +I+ I + +L ++L L +AG+V +VRG Sbjct: 4 LSTKGMYGLSAMYQLFLA-KSSKPLQIKEISTRAEIPQNYLEQLLILLRQAGLVNSVRGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAE 90 GG L + A+ I I D++ A E + V + Sbjct: 63 YGGYLLAKAAENILIKDILIALEGNLLVID 92 >gi|52081678|ref|YP_080469.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580] gi|52787064|ref|YP_092893.1| hypothetical protein BLi03369 [Bacillus licheniformis ATCC 14580] gi|319647593|ref|ZP_08001812.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2] gi|52004889|gb|AAU24831.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580] gi|52349566|gb|AAU42200.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|317390319|gb|EFV71127.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2] Length = 144 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +D+ QIA++ + + + +I + L KAG++E RG Sbjct: 1 MKISSRFTIAVHMLSLMHVRSDH-LTSEQIADSVNTNPVIIRQISRLLKKAGLIEVKRG- 58 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 GG L R A I++ DV KA E + + DC + + L VL KA Sbjct: 59 TGGAHLLRDAGAISLYDVYKAVEVVGEGELFHTHENPNPDCWVGANIHQVLELVLLKAQT 118 Query: 117 AFFDVLTQYSIECL 130 A ++L + SI+ L Sbjct: 119 AMENILKEMSIKEL 132 >gi|300172524|ref|YP_003771689.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886902|emb|CBL90870.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 168 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 16/147 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + +++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSHAVEQSLVVLVMLALQKDDLPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE-------SFFVAECFASHKIDCPLVGSCG------ 106 + GG RL RP +IT+LDV +A E + F S + + + Sbjct: 61 KEGGFRLARPISKITLLDVYQAIEGIGSFIHSTQLADRIFLSQQSNKRIEDVQQALEVAT 120 Query: 107 --LTSVLRKALNAFFDVLTQYSIECLV 131 + +V +A F + L Y+I L+ Sbjct: 121 NDVLTVFNEAEQDFKNRLQNYTIAKLL 147 >gi|254459171|ref|ZP_05072593.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] gi|207084064|gb|EDZ61354.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales bacterium GD 1] Length = 137 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 11/129 (8%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + YG+ ++ A ++ +I IA I + +L +IL L K+G+VE+VRG Sbjct: 4 ISTKGAYGLTAIIILAKEDNAKLLQIKDIAAKGDIPQNYLEQILVLLKKSGLVESVRGAN 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R + I++ +V+ + E + ++ + L + ++ Sbjct: 64 GGYKLSRDKNNISVYEVLNSLECCMAQTDNKSNDNM---------LQAFWEDTQEKVKEI 114 Query: 122 LTQYSIECL 130 Q SI+ L Sbjct: 115 F-QLSIKEL 122 >gi|42526191|ref|NP_971289.1| hypothetical protein TDE0676 [Treponema denticola ATCC 35405] gi|41816303|gb|AAS11170.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 139 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + L+ D I+ + ++ + + KIL L KAG+VET G Sbjct: 1 MKISVRFTAAVHTLLCIRYFEKDMRVTSDFISASTGVNAVIIRKILLQLQKAGLVETAAG 60 Query: 60 RRGGVRLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114 GG L + AD+IT+LDV A +E + CP+ L L A Sbjct: 61 V-GGSHLAQTADKITLLDVYNAINEGDEERDIFNFHPKPNPKCPVGRKIHLVLDDKLDDA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 NA D L++ +I L ++ Sbjct: 120 QNAMKDSLSKTTIADLSKD 138 >gi|255970632|ref|ZP_05421218.1| rrf2 family protein [Enterococcus faecalis T1] gi|255974212|ref|ZP_05424798.1| rrf2 family protein [Enterococcus faecalis T2] gi|256618068|ref|ZP_05474914.1| YwnA [Enterococcus faecalis ATCC 4200] gi|256761007|ref|ZP_05501587.1| rrf2 family protein [Enterococcus faecalis T3] gi|256958450|ref|ZP_05562621.1| YwnA [Enterococcus faecalis DS5] gi|256960515|ref|ZP_05564686.1| YwnA [Enterococcus faecalis Merz96] gi|256963008|ref|ZP_05567179.1| YwnA [Enterococcus faecalis HIP11704] gi|257078238|ref|ZP_05572599.1| YwnA [Enterococcus faecalis JH1] gi|257080433|ref|ZP_05574794.1| rrf2 family protein [Enterococcus faecalis E1Sol] gi|257083155|ref|ZP_05577516.1| rrf2 family protein [Enterococcus faecalis Fly1] gi|257088279|ref|ZP_05582640.1| YwnA [Enterococcus faecalis D6] gi|257091410|ref|ZP_05585771.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257418014|ref|ZP_05595008.1| rrf2 family transcriptional regulator [Enterococcus faecalis T11] gi|257420384|ref|ZP_05597374.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|255961650|gb|EET94126.1| rrf2 family protein [Enterococcus faecalis T1] gi|255967084|gb|EET97706.1| rrf2 family protein [Enterococcus faecalis T2] gi|256597595|gb|EEU16771.1| YwnA [Enterococcus faecalis ATCC 4200] gi|256682258|gb|EEU21953.1| rrf2 family protein [Enterococcus faecalis T3] gi|256948946|gb|EEU65578.1| YwnA [Enterococcus faecalis DS5] gi|256951011|gb|EEU67643.1| YwnA [Enterococcus faecalis Merz96] gi|256953504|gb|EEU70136.1| YwnA [Enterococcus faecalis HIP11704] gi|256986268|gb|EEU73570.1| YwnA [Enterococcus faecalis JH1] gi|256988463|gb|EEU75765.1| rrf2 family protein [Enterococcus faecalis E1Sol] gi|256991185|gb|EEU78487.1| rrf2 family protein [Enterococcus faecalis Fly1] gi|256996309|gb|EEU83611.1| YwnA [Enterococcus faecalis D6] gi|257000222|gb|EEU86742.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257159842|gb|EEU89802.1| rrf2 family transcriptional regulator [Enterococcus faecalis T11] gi|257162208|gb|EEU92168.1| conserved hypothetical protein [Enterococcus faecalis X98] Length = 139 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ + I +L IA + + + + +++ L KAG++ ++RG Sbjct: 1 MSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGAN- 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAF 118 L + ++I++ ++ A E + + +C + + + SVL K Sbjct: 60 KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQKM 117 Query: 119 FDVLTQYSIECLVRN 133 + L ++ ++ Sbjct: 118 EEELKSITLADVIHE 132 >gi|260587111|ref|ZP_05853024.1| homoserine O-acetyltransferase [Blautia hansenii DSM 20583] gi|260542601|gb|EEX23170.1| homoserine O-acetyltransferase [Blautia hansenii DSM 20583] Length = 223 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100 + +I+ L K VE V+G+ GG L + I D+++ TE C + C Sbjct: 123 IERIMPVLSKNHYVEGVQGKGGGYCLAKEPKDYRIGDILRLTEGQLVPVACLECNAETCK 182 Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 C + ++ + + ++ L++ Sbjct: 183 RANICKTFPMWKEFHHMVNNYFDNITLSDLMK 214 >gi|254509783|ref|ZP_05121850.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] gi|221533494|gb|EEE36482.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium KLH11] Length = 134 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D S IA+ + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGKLREAGLLTSEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 GG RL RP I++ DV A +E ++ S C + + ++ VL + + Sbjct: 61 AGGWRLARPPQNISLADVYLALDERLVASD-EISEAPACSVEHALQKRVSGVLEEIEQSL 119 Query: 119 FDVLTQYSIECL 130 L + SI + Sbjct: 120 VQKLGETSISEV 131 >gi|229172640|ref|ZP_04300199.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3] gi|228611111|gb|EEK68374.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3] Length = 143 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + IAE+ + + + K++ L +AG V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYIAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHMHEQPNPDCPIGANIQAVLEVILIQAQS 119 Query: 117 AFFDVLTQYSIECL 130 A ++L ++ L Sbjct: 120 AMEEILRNITMGHL 133 >gi|146320050|ref|YP_001199761.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253751100|ref|YP_003024241.1| transcriptional regulator [Streptococcus suis SC84] gi|253753001|ref|YP_003026141.1| transcriptional regulator [Streptococcus suis P1/7] gi|145690856|gb|ABP91361.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251815389|emb|CAZ50962.1| putative transcriptional regulator protein [Streptococcus suis SC84] gi|251819246|emb|CAR44507.1| putative transcriptional regulator protein [Streptococcus suis P1/7] gi|292557653|gb|ADE30654.1| Transcriptional regulator, Rrf2 [Streptococcus suis GZ1] gi|319757362|gb|ADV69304.1| transcriptional regulator [Streptococcus suis JS14] Length = 139 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 GG RL + DQIT+L V +A E E + C + + L S L A Sbjct: 61 I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLLDSRLENA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 +A + L + + L+ Sbjct: 120 QSALENELAKTRLADLLAE 138 >gi|253701416|ref|YP_003022605.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Geobacter sp. M21] gi|251776266|gb|ACT18847.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21] Length = 154 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + + + ++ A + S IA+ IS L K+++ LV G+V+ +RG Sbjct: 1 MKLNKASLFALISVLELASDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++ T+LD+++ E + +K P++ L SV + Sbjct: 61 GGGYRFAGNVNRTTLLDIIQLFETLESELDLPHWNKAAEPVISE--LHSVTSEIDTVTRA 118 Query: 121 VLTQYSIECLVRN 133 +L ++ L++N Sbjct: 119 ILDTITLSTLLKN 131 >gi|253576663|ref|ZP_04853990.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843873|gb|EES71894.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 145 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R I +L I D IA + + + + +I+ L KAG+VE G Sbjct: 1 MTISSRFSVAIHILSLLEISKDEICTSEYIAGSVNTNPVVIRRIMGMLSKAGLVEVRTGV 60 Query: 61 RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGS--CGLTSVLRKA 114 G +L R DQIT+LDV +A E+ F DC + + + + KA Sbjct: 61 AG-AKLSRQLDQITLLDVYRAVHVVEEDGLFAV--HDQTNPDCLVGKNIQAAIEPIFSKA 117 Query: 115 LNAFFDVLTQYSIECLVRN 133 A + L +++ +V Sbjct: 118 QKAMENTLAAVTLQDVVNE 136 >gi|223932766|ref|ZP_03624764.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis 89/1591] gi|330832047|ref|YP_004400872.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3] gi|223898599|gb|EEF64962.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis 89/1591] gi|329306270|gb|AEB80686.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis ST3] Length = 139 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 GG RL + DQIT+L V +A E E + C + + L S L A Sbjct: 61 V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLLDSRLENA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 +A + L + + L+ Sbjct: 120 QSALENELAKTRLADLLAE 138 >gi|197117827|ref|YP_002138254.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197087187|gb|ACH38458.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem] Length = 154 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + + + ++ A + S IA+ IS L K+++ LV G+V+ +RG Sbjct: 1 MKLNKASLFALISVLELARDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++ T+LD+++ E + +K P+V L SV + Sbjct: 61 GGGYRFAGNVNRTTLLDIIQLFETLESELDLPHWNKAAEPVVSE--LHSVTSEIDTVTRA 118 Query: 121 VLTQYSIECLVRN 133 +L ++ +++N Sbjct: 119 ILDTVTLATVLKN 131 >gi|163939768|ref|YP_001644652.1| BadM/Rrf2 family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132791|ref|ZP_04261636.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196] gi|229166820|ref|ZP_04294568.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621] gi|163861965|gb|ABY43024.1| transcriptional regulator, BadM/Rrf2 family [Bacillus weihenstephanensis KBAB4] gi|228616623|gb|EEK73700.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621] gi|228650618|gb|EEL06608.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196] Length = 143 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 8/147 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + +L + +AE+ + + + KI L +A V RG Sbjct: 1 MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKITSYLKQAEFVYVKRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + +IT+LDV A E + DCP+ + L +L +A + Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143 A +VL ++ L S+++ NA Sbjct: 120 AMEEVLRNITMGQLFE---SLQQKMNA 143 >gi|269122202|ref|YP_003310379.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Sebaldella termitidis ATCC 33386] gi|268616080|gb|ACZ10448.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis ATCC 33386] Length = 137 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R I +L+ D IA + + + + +I+ L +AG+++ G Sbjct: 1 MKISSRFSVAIHILVLLECGKDKIFTSEFIAGSVNTNPVVIRRIMGKLKEAGLIDVKSG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG L + ++I++ DV KA E + + DCP+ L L KA Sbjct: 60 TGGAHLLKAPEEISLYDVYKAGEVVSAGELFSIHEHPNTDCPVGAKIQGVLEIFLLKAQE 119 Query: 117 AFFDVLTQYSIECLVR 132 A VL SI+ ++ Sbjct: 120 AMEQVLKDTSIKDILE 135 >gi|332667399|ref|YP_004450187.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332336213|gb|AEE53314.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter hydrossis DSM 1100] Length = 138 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 3/138 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K Y IR ++Y A H + +I EA + FL K+LQ L + ++ + +G Sbjct: 2 FSKSCQYAIRAVLYLAEHGKEGQCVGVKEITEALEVPGPFLAKLLQQLSRNQLIGSTKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + ++ V++ + C C C L Sbjct: 62 HGGFCMSPKHLEAPLIMVIECIDGPEVFTSCVLGLPA-CNAANPCYLHHQSLAYKQGMLK 120 Query: 121 VLTQYSIECLVRNRSSIK 138 +L +I + R ++ Sbjct: 121 ILKDKTIAEVARQVPELR 138 >gi|237794684|ref|YP_002862236.1| putative transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|229261414|gb|ACQ52447.1| putative transcriptional regulator [Clostridium botulinum Ba4 str. 657] Length = 137 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + DV++A + + C + + G+C + L K Sbjct: 61 VKGGYALNKQPKDINLRDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHMTLCKIQRKL 120 Query: 119 FDVLTQYSIECLVRN 133 L + + ++ Sbjct: 121 VSELEAVNFQEILDE 135 >gi|170016479|ref|YP_001727398.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803336|gb|ACA81954.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 166 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + VL+ A+ D P + ++ +SE +L K ++ LV AGIV+ + Sbjct: 1 MKMSNAVEQSLVVLVMLALQKDELPIKSYLLSNRLEVSESYLKKTMRKLVVAGIVQAIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-------ECFASHKIDCPLVGSCG------ 106 + GG +L R IT+LDV +A E F + + P+ Sbjct: 61 KEGGFKLARSIADITLLDVYEAIEGDGSFIHSTQLADRIFLNQASNKPVEDVQQALEVAV 120 Query: 107 --LTSVLRKALNAFFDVLTQYSIECLVRN 133 + +V A F L Y+I L+++ Sbjct: 121 DDVLTVFNDAEADFKKRLQNYTIAKLLQH 149 >gi|307721561|ref|YP_003892701.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas autotrophica DSM 16294] gi|306979654|gb|ADN09689.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas autotrophica DSM 16294] Length = 134 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ ++ YG+ + + +I +IA IS +L +IL L K G V +VRG Sbjct: 4 VSTKSLYGVAAMHALYNSPRNKLMQIKEIAAVTQISHGYLEQILSTLKKHGFVISVRGAN 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L A +I +LDVV+A E F + L S + V Sbjct: 64 GGYKLASDASKIIVLDVVEALEGELFTVSQNVGASV--------VLDSFWKDIQEKVRAV 115 Query: 122 LTQYSIECL 130 + L Sbjct: 116 F-NIKLSEL 123 >gi|229121497|ref|ZP_04250724.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201] gi|228661961|gb|EEL17574.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201] Length = 147 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 6 KISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP- 64 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L + +IT+LDV A E + DCP+ + L +L +A +A Sbjct: 65 GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQSA 124 Query: 118 FFDVLTQYSIECL 130 +VL ++ L Sbjct: 125 MEEVLRNITMGQL 137 >gi|134099141|ref|YP_001104802.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338] gi|291009886|ref|ZP_06567859.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338] gi|133911764|emb|CAM01877.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338] Length = 163 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + +H +IA + + + + ++L + AG+V + RG G L Sbjct: 10 AAHALTWIELHHRREGGTATSERIAGSVNTNPVVIRRLLGRMRDAGLVHSRRGAEAGWVL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVL 122 RP +++T+ DV +A E + A + +DCP+ G+ V+R + A L Sbjct: 70 ARPLEEMTLRDVYEAIEPAPLFAVHRSEPNLDCPIGS--GIRPVMRLAYARVEQAVRAEL 127 Query: 123 TQYSIECLVRN 133 ++ ++R+ Sbjct: 128 ECITLADVLRD 138 >gi|257417296|ref|ZP_05594290.1| YwnA [Enterococcus faecalis AR01/DG] gi|257159124|gb|EEU89084.1| YwnA [Enterococcus faecalis ARO1/DG] Length = 139 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ + I +L IA + + + + +++ L KAG++ ++RG Sbjct: 1 MSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGAN- 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAF 118 L + ++I++ ++ A E + + +C + + + SVL K Sbjct: 60 KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQKM 117 Query: 119 FDVLTQYSIECLVRN 133 + L ++ ++ Sbjct: 118 AEELKSITLADVIHE 132 >gi|304437884|ref|ZP_07397831.1| Rrf2 family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369106|gb|EFM22784.1| Rrf2 family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 156 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 5/141 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ + P ++ + + + +IL L +AG++ RG Sbjct: 12 MQISSRFTIAVHILICVDLFGKREPATSESLSGSIGAHPVVIRRILGQLRRAGLITVARG 71 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115 R GG + + IT+ D+ A E + + CP+ L L Sbjct: 72 REGGAHIAKELTDITLADIFCAVESISGQSLFSFHENPNPACPVGSHIHDVLDHRLADIQ 131 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 +A + + ++ +++ Sbjct: 132 HAMEKKMEETTLADIIKEARE 152 >gi|306829070|ref|ZP_07462260.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|322374754|ref|ZP_08049268.1| Rrf2 family protein [Streptococcus sp. C300] gi|304428156|gb|EFM31246.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|321280254|gb|EFX57293.1| Rrf2 family protein [Streptococcus sp. C300] Length = 145 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 11/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +++ A+ + D +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIATHMMISIAMQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + I++LDV +A E +S + + +CP+ + + +VL Sbjct: 61 -TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHAVLDQKLF 117 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + L Q S+ +V Sbjct: 118 DVQAAMENQLRQTSLAQVVAE 138 >gi|229552795|ref|ZP_04441520.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540586|ref|YP_003175085.1| transcriptional regulator Rrf2 family [Lactobacillus rhamnosus Lc 705] gi|229313777|gb|EEN79750.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152262|emb|CAR91234.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus Lc 705] Length = 146 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 12/147 (8%) Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M + + + Y A H DY I +I+E I + KI L K+GI+ Sbjct: 1 MAFSVAFSQALEITAYVNAKSQAQHEDY-LSIQKISEMLNIPVPSIKKISSTLKKSGILT 59 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109 + G GG+RL + IT+ +++ A E + + + + G T+ Sbjct: 60 SKTGLNGGLRLAKTPQTITVYEILTAIEGTAPLFKLHQEIDPAAFVNGERVTSWLTASTN 119 Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136 VL +A +A VL Q SI L + Sbjct: 120 VLNRAEDAMVQVLKQTSIADLAEAAEA 146 >gi|170760233|ref|YP_001786721.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407222|gb|ACA55633.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 137 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + DV++A + + C + + G+C + L K Sbjct: 61 VKGGYALNKQPKDINLRDVIEAIDGPICINRCTYDPRYCNAGKNGNCEIHRSLCKIQRKL 120 Query: 119 FDVLTQYSIECLVRN 133 L + E ++ Sbjct: 121 VSELEAVNFEEILDK 135 >gi|168705374|ref|ZP_02737651.1| possible transcriptional regulator, Rrf2 family protein [Gemmata obscuriglobus UQM 2246] Length = 140 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R VL A +D IA + + + + +IL L +AG+V T G Sbjct: 1 MTRSSRFVVAAHVLTLLA-RSDGALTSEYIAGSVNTNPVVIRRILAVLARAGLVATQEGT 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG RL +PA +IT+ V +A E A CP+ G L LR A A Sbjct: 60 GGGGRLAKPAAEITLRAVYEAVEPDALFALHPRDPNPLCPVGGGIQSALEPTLRAAETAL 119 Query: 119 FDVLTQYSIECLV 131 L S+ LV Sbjct: 120 LGSLAGTSVADLV 132 >gi|229150178|ref|ZP_04278400.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550] gi|228633297|gb|EEK89904.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550] Length = 146 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R + +L + +AE+ + + + KI+ L +AG V RG Sbjct: 5 KISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP- 63 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L + +IT+LDV A E + DCP+ + L +L +A +A Sbjct: 64 GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQSA 123 Query: 118 FFDVLTQYSIECL 130 +VL ++ L Sbjct: 124 MEEVLRNITMGQL 136 >gi|117164456|emb|CAJ88001.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 145 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M R + VL + A+ + QIA + + + + + L L KAG+V Sbjct: 1 MSANSRMTIAVHVLTWIALVHGRGRDVVTSDQIATSVATNPVVIRRSLADLRKAGLVTVR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115 +G G L R + I +LDV +A + A + CP+ L V A Sbjct: 61 QGAGAGYTLARAPESIALLDVFQAVHDEPLFALHRSEPNQVCPVGRGIQPALRHVYTDAE 120 Query: 116 NAFFDVLTQYSIECLVRN 133 AF L SI ++R+ Sbjct: 121 EAFRRELAGVSIADVLRD 138 >gi|281491024|ref|YP_003353004.1| Rrf2 family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374782|gb|ADA64302.1| Transcriptional regulator, Rrf2 family [Lactococcus lactis subsp. lactis KF147] Length = 156 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 + GG L + I+ DV A E + + + + C +TS L + Sbjct: 61 KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKATRCAITSALDEIE 120 Query: 116 NAFFDVLTQYSIECLVRN 133 N L+ S+ + Sbjct: 121 NTLVRTLSNVSLAQVADE 138 >gi|253580214|ref|ZP_04857481.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848733|gb|EES76696.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 145 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 59/135 (43%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L++ A+ ++ ++IAE+ + ++ +++ L AGIV +G Sbjct: 1 MKYSTKLSDTIHILIFIALGDEEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L +PAD+I + D+ +A E + DC + + + + N Sbjct: 60 HANAALAKPADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119 Query: 119 FDVLTQYSIECLVRN 133 + + +++ ++ Sbjct: 120 DEKMKSITLQDIIDR 134 >gi|291551332|emb|CBL27594.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] Length = 158 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT TDY IR++ Y A S++++ + ++ KI + L +AGI++ G Sbjct: 1 MQLTSTTDYAIRIVCYLAAQR-QMISTSELSQELSVPSNYIPKITKKLKQAGIIKACEGT 59 Query: 61 RGGVRLCRPADQITILDVV 79 GG L + + I++++++ Sbjct: 60 NGGYMLAKQPENISLMEII 78 >gi|257457624|ref|ZP_05622791.1| Rrf2 family protein [Treponema vincentii ATCC 35580] gi|257445010|gb|EEV20086.1| Rrf2 family protein [Treponema vincentii ATCC 35580] Length = 141 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + L+ DY IAE+ ++ + + KIL L KAG+VET G Sbjct: 1 MKISVRFTAAVHTLLCILYFEKDYRVTSDFIAESTGVNAVIIRKILLQLQKAGLVETAAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF---FVAECFASHKIDCPLVGSCG--LTSVLRKA 114 GG L + ++I +L + KA E V S CPL + L VL A Sbjct: 61 V-GGSHLVKKPEEINLLSIYKAVNEDNVHRTVFSFHPSPNSQCPLGKNIHRILDPVLDNA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A L + ++ ++ Sbjct: 120 QKALEVELQKTTLADMLSQ 138 >gi|325261733|ref|ZP_08128471.1| Rrf2 family protein [Clostridium sp. D5] gi|324033187|gb|EGB94464.1| Rrf2 family protein [Clostridium sp. D5] Length = 128 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 7/132 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+ DY IR+L + + + I +A + E F +KI++ L KAG V RG Sbjct: 1 MLLTRENDYAIRILRSL--KDKEKHTVKDICQAEEVPEAFAYKIIRKLQKAGFVAVERGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 GG RL +T+ DVV A + + C C +C + + L K Sbjct: 59 AGGCRLGTDLKSLTLYDVVTAVDAEPLIMPCMRQ---TCSRNAGDACKVHAELMKIQKVL 115 Query: 119 FDVLTQYSIECL 130 + L + L Sbjct: 116 IEELKSRRLFDL 127 >gi|255322125|ref|ZP_05363272.1| RRF2 family protein [Campylobacter showae RM3277] gi|255300823|gb|EET80093.1| RRF2 family protein [Campylobacter showae RM3277] Length = 151 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + ++ I +L+ C D N +A + + + I++ L A ++ G Sbjct: 12 MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTIGTNPVIVRNIIRLLKSANLINVSAG- 70 Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L + +QIT+ D+ A E + + + CPL G LT A A Sbjct: 71 TGGASLAKKPEQITLFDIFSAVNEGENDIFKIHKNSPPPCPLGGRIEALLTPKFGSAQQA 130 Query: 118 FFDVLTQYSIECLVRN 133 FD L +++ L+ Sbjct: 131 MFDSLAGVNLQNLLDE 146 >gi|88856365|ref|ZP_01131024.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1] gi|88814449|gb|EAR24312.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1] Length = 141 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 11 IRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +R++M A+ + IA+ + K + L + G++E VRGR GGVR+ Sbjct: 3 LRIIMLLSAMPVFELEKTKVIAQKIDTPYNHVSKAIVRLRELGMIEAVRGRSGGVRISDA 62 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 Q T+ V++ + +A+C + CPL+ CGL LR A AF+ L I Sbjct: 63 GRQATVGWVLRQLDTRTDLADCETPDGL-CPLIDGCGLRGALRLAREAFYAALDDVVISS 121 Query: 130 LVRNRSS 136 L + RS Sbjct: 122 LRQPRSD 128 >gi|228477644|ref|ZP_04062273.1| Rrf2 family protein [Streptococcus salivarius SK126] gi|228250533|gb|EEK09744.1| Rrf2 family protein [Streptococcus salivarius SK126] Length = 149 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 12/145 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R + +L A + N+ +A + ++ + + K L L KA ++ R Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDFMAGSVGVNPVIIRKTLSQLRKADLISVQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G GG L + ++I +L V +A + S + + CP+ + + +L ++L Sbjct: 61 G-TGGASLLKDPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117 Query: 116 N----AFFDVLTQYSIECLVRNRSS 136 A L + ++ ++++ + Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKA 142 >gi|322392211|ref|ZP_08065672.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC 700780] gi|321144746|gb|EFX40146.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC 700780] Length = 158 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MHL+ + I VL+ + ++E +S+ +L KI++ L G+V++VRG Sbjct: 1 MHLSSGWEQSIYVLLMLDQLPEGEYINSIFLSERLGVSDSYLKKIIKLLDNEGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 + GG+ L RP QI+ DV A E + E + + C +T+ L Sbjct: 61 KNGGIALSRPLSQISFYDVFVAIEGKNRIFESQNLLKRFLGEEEGKKAKRCVVTNSLDMI 120 Query: 115 LNAFFDVLTQYSIECLV 131 N LT ++ + Sbjct: 121 ENTLVSTLTSITLSQVA 137 >gi|302023274|ref|ZP_07248485.1| transcriptional regulator protein [Streptococcus suis 05HAS68] Length = 139 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 GG RL + DQIT+L V +A E E + C + + + S + A Sbjct: 61 V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLIDSRMEHA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 +A + L + + L+ Sbjct: 120 QSALENELAKTRLADLLAE 138 >gi|322376528|ref|ZP_08051021.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. M334] gi|321282335|gb|EFX59342.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. M334] Length = 158 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ + ++E +S+ +L KI++ L G+V++VRG Sbjct: 1 MRLSSGWEQSVYVLLMLNQLPEGKYINTISLSERLEVSDSYLKKIIKLLDNEGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 + GGV L +P QIT DV A E + E + C +T+ L Sbjct: 61 KNGGVALSKPLSQITFYDVFVAIEGKNRIFESQNLLKKFLGNKESKKAKRCVVTNSLDII 120 Query: 115 LNAFFDVLTQYSIECLVRN 133 N LT ++ + Sbjct: 121 ENTLVATLTSITLSQVAHQ 139 >gi|326406059|gb|ADZ63130.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 156 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 + GG L + I+ DV A E + + + + C +TS L + Sbjct: 61 KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKAKRCAITSALDEIE 120 Query: 116 NAFFDVLTQYSIECLVRN 133 N L+ S+ + Sbjct: 121 NTLVRTLSNVSLAQVADE 138 >gi|89894263|ref|YP_517750.1| hypothetical protein DSY1517 [Desulfitobacterium hafniense Y51] gi|219668676|ref|YP_002459111.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Desulfitobacterium hafniense DCB-2] gi|89333711|dbj|BAE83306.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538936|gb|ACL20675.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium hafniense DCB-2] Length = 151 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ R +++L+ A D +A + + + + +I+ L KAG++ G Sbjct: 1 MQLSSRFPVAVQILIIIAWCPEDVKVTSEALAVSVNTNPVLIRRIMGYLKKAGLIAISSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113 GG +L R ++IT+L V +A E + + A CP+ C + VLR + Sbjct: 61 -TGGAKLTRSTEEITLLAVYRAVELTDQHALFGLHAHPNAYCPIG--CRINDVLRPPLEE 117 Query: 114 ALNAFFDVLTQYSIECLV 131 A NA L + +I+ L+ Sbjct: 118 ARNALEGSLAKVTIQELL 135 >gi|163731797|ref|ZP_02139244.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161395251|gb|EDQ19573.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 147 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ D + IA IS +L ++ L +A +V +VRG GG RL R Sbjct: 3 ALADIAMQPGDKLVSLGDIATRQAISLAYLEQLFVKLRRADLVTSVRGPGGGYRLKRSPS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 I +++++ A +E+ A + LT+ L ++L+A + L Q + + Sbjct: 63 DIRVVEILSAVDETVDAMHKGAGASGGASGSQAQSLTNRLWESLSAHVYVFLHQTRLSDV 122 Query: 131 VRNR 134 + N Sbjct: 123 IANE 126 >gi|298246777|ref|ZP_06970582.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297549436|gb|EFH83302.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 154 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 12/134 (8%) Query: 10 GIRVLMYCAIH----NDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + L + A D + +IAE+ + + L ++L + K +V RG G Sbjct: 10 AVHTLTWMARRMANYGDQYDFSTSREIAESVNTNPVILRELLGMMEKQHLVRVQRGSNAG 69 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFF 119 +L R ++IT+L+V + + CP+ CG+ S L+ +A Sbjct: 70 WKLARKPEEITLLEVYQVVKPHTMFTLHHTPPNPQCPIG--CGIGSALQGIYANVQDAME 127 Query: 120 DVLTQYSIECLVRN 133 L + +I ++R+ Sbjct: 128 QELARTTIADVLRD 141 >gi|322516487|ref|ZP_08069406.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322125006|gb|EFX96418.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 149 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 12/152 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R + +L A + N+ +A + ++ + + K L L KA ++ R Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMAGSVGVNPVIIRKTLSQLKKADLISVQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR--- 112 G GG L + ++I +L V +A + S + + CP+ + + +L Sbjct: 61 G-SGGATLAKTPEEINLLQVYRAVDSIGPSGKLFSFHDNPNPACPVGRN--IHGILDQSL 117 Query: 113 -KALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 A L + ++ ++++ + K A Sbjct: 118 VDVQMAMEKELEKKTLAGILKDAKANWKEVGA 149 >gi|154497763|ref|ZP_02036141.1| hypothetical protein BACCAP_01741 [Bacteroides capillosus ATCC 29799] gi|150273261|gb|EDN00406.1| hypothetical protein BACCAP_01741 [Bacteroides capillosus ATCC 29799] Length = 152 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 58/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L + ++ ++IAE+ + ++ +++ L AG++ + +G Sbjct: 1 MKYSTKLSDALHILAFLSMGAGQRITSAKIAESVKTNPAYIRQLMAKLKSAGMITSSQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118 + L R D+IT+LDV +A E + + +C + + ++ A Sbjct: 60 QANAELTRRPDEITVLDVYRAIEGNKPLLHWDIDTNPECGVGIYVQLSIADFYQEIQKAA 119 Query: 119 FDVLTQYSIECLVRN 133 + +++ ++ Sbjct: 120 EQKMQTITLQDIIDR 134 >gi|56965547|ref|YP_177281.1| hypothetical protein ABC3789 [Bacillus clausii KSM-K16] gi|56911793|dbj|BAD66320.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 142 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + + A +A + + + + +I L KAGI+E G Sbjct: 1 MKISSRFSVAVHIGALLATERTAVLTSEWMAASVNTNPVVIRRISAQLKKAGIIEGRSG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG +L + D++T+LD +A + + + +C + + L +L KA Sbjct: 60 TGGAKLAKDPDELTLLDFYQAVQVVADNELFHIHSEPNPNCYVGANIQGVLEVMLGKAQR 119 Query: 117 AFFDVLTQYSIECLVRN 133 A +VL ++ ++ + Sbjct: 120 AMEEVLASMTLADVLAS 136 >gi|289167875|ref|YP_003446144.1| transcriptional regulator [Streptococcus mitis B6] gi|288907442|emb|CBJ22279.1| transcriptional regulator [Streptococcus mitis B6] Length = 158 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + I VL+ + ++E +S+ +L KI++ L G+V++VRG Sbjct: 1 MRLSSGWEQSIYVLLMLDQLAKGKYINTISLSERLEVSDSYLKKIIKLLDNEGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 + GGV L +P QIT DV A E + E + C +T+ L Sbjct: 61 KNGGVALSKPLSQITFYDVFVAIEGKNRIFESQNLLKKFLGNEESKKAKRCVVTNSLDII 120 Query: 115 LNAFFDVLTQYSIECLVRN 133 N LT ++ + Sbjct: 121 ENTLVATLTSITLSQVAHQ 139 >gi|254460865|ref|ZP_05074281.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales bacterium HTCC2083] gi|206677454|gb|EDZ41941.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium HTCC2083] Length = 142 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A + + IAE + + + ++L L +AG++ +V+G Sbjct: 1 MKRNSRLSLALHTLSHMAGDPERKRTSADIAEHAGTNPVVVRRVLGKLREAGLLASVKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118 GG L +PA+ IT+ DV A +E + + C + VL + Sbjct: 61 AGGWSLAKPANSITLADVYIALDERLVSGGEQDAEAMYCSIERDLQTRVADVLGEIEENL 120 Query: 119 FDVLTQYSIECL 130 L++ SI + Sbjct: 121 VQRLSETSITDV 132 >gi|199598905|ref|ZP_03212315.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus rhamnosus HN001] gi|199590213|gb|EDY98309.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus rhamnosus HN001] Length = 146 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 12/147 (8%) Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M + + + Y A H DY I +I+E I + KI L K+GI+ Sbjct: 1 MAFSVAFSQALEITAYVNAKSQAQHEDY-LSIQKISEMLNIPVPSIKKISSTLKKSGILT 59 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109 + G GG+RL + IT+ +++ A E + + + + G T+ Sbjct: 60 SKTGLNGGLRLAKTPQTITVYEILAAIEGTAPLFKLHQEIDPAAFVNGERVTSWLVASTN 119 Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136 VL +A +A VL Q SI L + Sbjct: 120 VLNRAEDAMVQVLKQTSIADLAEAAEA 146 >gi|154174545|ref|YP_001408025.1| BadM/Rrf2 family transcriptional regulator [Campylobacter curvus 525.92] gi|112803332|gb|EAU00676.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter curvus 525.92] Length = 134 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + L+ + P + I+ IS+ FL KILQ L K I+++ + Sbjct: 1 MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKEQILKSYKVA 59 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 GG L I+I +++ E+ V EC S CP SC + + N Sbjct: 60 NGGFALQADPQNISIKTIIECAEKREVSVFECSTSADG-CPSAKASSCQIWLMFTGLQNK 118 Query: 118 FFDVLTQYSIECLVRN 133 ++L + +++ Sbjct: 119 VDEMLDAIKLSDIIKK 134 >gi|56418891|ref|YP_146209.1| hypothetical protein GK0356 [Geobacillus kaustophilus HTA426] gi|56378733|dbj|BAD74641.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 138 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R + +L A IA++ + + + +I+ L KAG+V+ G Sbjct: 3 QISTRFSMAVHILCLLATSPAD-CTGDFIAQSVNTNPVIIRRIMGMLKKAGLVDVRPGV- 60 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L +P DQIT+LDV +A E+ + I CP+ + L + L+ A A Sbjct: 61 GGASLRKPPDQITLLDVYRAVGVVETDQLFRIHEHPNIQCPVGRNIEAVLQAELKAAQAA 120 Query: 118 FFDVLTQYSIECLVRN 133 + L+Q +I L+ Sbjct: 121 MEERLSQTTISRLIAQ 136 >gi|213612431|ref|ZP_03370257.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 87 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F Sbjct: 6 GENGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSF 61 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 L Y++ LV + K+ Sbjct: 62 LKELDNYTLADLVEENQPLYKLL 84 >gi|291522993|emb|CBK81286.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus GD/7] Length = 145 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L++ A+ +D ++IAE+ + ++ +++ L AGIV +G Sbjct: 1 MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L + AD+I + D+ +A E + +C + + + + N Sbjct: 60 HANAALAKSADKINMYDIYRAVEGDKPLLHLDTDTNPNCGIGINIQFAIGDFYHEIQNMI 119 Query: 119 FDVLTQYSIECLVRN 133 + + +++ ++ Sbjct: 120 DEKMKSITLQDIIDR 134 >gi|15672540|ref|NP_266714.1| hypothetical protein L153086 [Lactococcus lactis subsp. lactis Il1403] gi|13432280|sp|Q48660|YFFB_LACLA RecName: Full=Putative HTH-type transcriptional regulator yffB gi|12723445|gb|AAK04656.1|AE006290_1 hypothetical protein L153086 [Lactococcus lactis subsp. lactis Il1403] Length = 156 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 + GG L + I+ DV A E + + + + C +TS L + Sbjct: 61 KNGGFSLNKELHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKAKRCAITSALDEIE 120 Query: 116 NAFFDVLTQYSIECLVRN 133 N L+ S+ + Sbjct: 121 NTLVRTLSNVSLAQVADE 138 >gi|118475517|ref|YP_892257.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus subsp. fetus 82-40] gi|118414743|gb|ABK83163.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus subsp. fetus 82-40] Length = 134 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK ++Y + + ++ P + ++ IS+ FL KILQ L K GI+ + +G Sbjct: 1 MLFTKASEYALLS-LILLSQSNSPKDVDTMSTELGISKSFLAKILQNLAKEGILNSFKGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCP--LVGSCGLTSVLRKALNA 117 GG L I+I ++++ E+ V EC ++ + DCP C + + Sbjct: 60 NGGFILANKPANISIKKILESAEKRKASVFEC-SNARSDCPSNKGDICKMWPMFNSLQLK 118 Query: 118 FFDVLTQYSIECLVRN 133 D L S+ +++ Sbjct: 119 VDDFLDNISLADIIKK 134 >gi|295109399|emb|CBL23352.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum A2-162] Length = 149 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 6/148 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + V++ AI+ + + IAE+ + F+ +++ L KAG++ +V G Sbjct: 1 MKYSTKLSDTVHVMVLIAINKEKSLSSASIAESVHTNPGFVRQLMLKLKKAGLMTSVAG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L +PADQIT+LD+ KA E + +C + + L + Sbjct: 60 HARPSLSKPADQITLLDIYKAVEGDKPLLHLDTHTNPECGVGINIQLSLQGFYNEIQKTA 119 Query: 119 FDVLTQYSIECLVR---NRSSIKKIFNA 143 + + +++ ++ R SI+ + Sbjct: 120 EEKMNTITLQDIIDIYYQRISIENNLQS 147 >gi|113868325|ref|YP_726814.1| putative transcriptional regulator [Ralstonia eutropha H16] gi|113527101|emb|CAJ93446.1| Putative Transcriptional regulator [Ralstonia eutropha H16] Length = 136 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L A + P S IA + + + +++ L +AG+V T G GG L RP Sbjct: 2 AVHILTLLASSAE-PVPSSLIAASVGTNPALIRRLVGQLAEAGLVATTMGSTGGATLARP 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127 A IT+LDV + E + + ++ CP+ L V +A A D L +I Sbjct: 61 AASITLLDVFRVVETTALITLHQSAPNPACPVGREITGALRKVADRAQAAMDDTLAGATI 120 Query: 128 ECLVRN 133 ++ + Sbjct: 121 ASMLAD 126 >gi|125623396|ref|YP_001031879.1| putative transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|806485|gb|AAC41452.1| ORF156 [Lactococcus lactis subsp. cremoris] gi|124492204|emb|CAL97133.1| putative transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300070144|gb|ADJ59544.1| putative transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 156 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 + GG L + I+ DV A E + + + + C +T+ L + Sbjct: 61 KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGAESGKAQHCAITTALDEIE 120 Query: 116 NAFFDVLTQYSIECLVRN 133 N L+ S+ + Sbjct: 121 NTLVRTLSNVSLAQVADE 138 >gi|78223304|ref|YP_385051.1| BadM/Rrf2 family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194559|gb|ABB32326.1| transcriptional regulator, BadM/Rrf2 family [Geobacter metallireducens GS-15] Length = 143 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 2/128 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + + + ++ A + +IA +S L KI++ LV G+V+ VRG Sbjct: 1 MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R + T+LD+++ E + +D P++ L S+ + + Sbjct: 61 GGGYRFSGNIQRTTLLDIIQMFENLESELDVPHGSPLDVPILEE--LKSIANEIDDLTKA 118 Query: 121 VLTQYSIE 128 VL ++E Sbjct: 119 VLDTITLE 126 >gi|237748113|ref|ZP_04578593.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229379475|gb|EEO29566.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 146 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + Y +++++ A+ + D I+ I+ IS L + + L AG++ET G Sbjct: 6 MRIATKERYALKLMVDLALQDKDEYISINSISTRQGISIASLRAVARALTAAGLIETNTG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 RL R A QI I ++++AT+ F C C C + F Sbjct: 66 HLYHYRLNRDAAQIPIPEILRATDGKFACTACSEIEPEKCTRHRVCANVLFWEGMQESEF 125 Query: 119 FDVLTQYSIECL 130 + ++ L Sbjct: 126 IGTKSGQTLCDL 137 >gi|162454023|ref|YP_001616390.1| rrf2 family protein [Sorangium cellulosum 'So ce 56'] gi|161164605|emb|CAN95910.1| rrf2 family protein [Sorangium cellulosum 'So ce 56'] Length = 148 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 L A D ++ + + FL +IL L +AG++E GR GG RL RP Sbjct: 9 ATHALALLA-QADESCASDALSASINTNPAFLRRILARLSQAGLIEAREGRSGGYRLARP 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----FFDVLTQY 125 A +I + +V A E +A CP+ G+ + A L Q Sbjct: 68 AKKIRLSEVYAAVEPEGAIAPSPCEPNARCPIGS--GIQRAFDEVAEAANAGLLRGLAQK 125 Query: 126 SIECLV 131 ++ + Sbjct: 126 TVADIA 131 >gi|89054747|ref|YP_510198.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1] gi|88864296|gb|ABD55173.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1] Length = 136 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D + IA+ + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLGHMAGAPDKLRTSADIADHAGTNPVVVRRVLGRLREAGLLISEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 GG RL R IT+ DV A +ES VA + C + ++SV++ + Sbjct: 61 AGGWRLARAPQSITLADVYLALDESL-VASVESDDVPSCSVEHALHRRVSSVMKDIEQSL 119 Query: 119 FDVLTQYSIECL 130 + L + +I + Sbjct: 120 IERLGETTISEV 131 >gi|167748199|ref|ZP_02420326.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662] gi|167652191|gb|EDR96320.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662] Length = 184 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + + L+ A D +AE+ + + + I L KAGI+ RG Sbjct: 13 MRVSTQFTIAVHALIMIAYFPDIRVTSEMVAESVGNNPVIIRNIYGKLKKAGILSIQRG- 71 Query: 61 RGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + A++IT+ DV +A E + + + CP+ S L L++A+N Sbjct: 72 TGATSLTKTANEITLWDVYQAVETDAVDEIFKFSDTLSGACPVGSSIKELLFIHLQEAVN 131 Query: 117 AFFDVLTQYSIECL 130 + D L++ +IE L Sbjct: 132 SLKDSLSKTTIEEL 145 >gi|170754322|ref|YP_001780964.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169119534|gb|ACA43370.1| putative transcriptional regulator [Clostridium botulinum B1 str. Okra] Length = 137 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEVLPLRFLLKLLRKLTKSGIVVSFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + DV++A + + C + + G+C + L K Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKL 120 Query: 119 FDVLTQYSIECLVRN 133 L + + ++ Sbjct: 121 VSELEAVNFQEILDK 135 >gi|268610344|ref|ZP_06144071.1| hypothetical protein RflaF_12696 [Ruminococcus flavefaciens FD-1] Length = 145 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 10/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + + +L I ++ + ++ + + +L L GIVET +G Sbjct: 1 MQITSKFTVAVHILTCIDIFGGQMRVTSDFLSGSTGVNAVIVRNVLGQLRNTGIVETRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113 GG L + D+IT+ D+ KA + + + + DCP+ + + + Sbjct: 61 -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNADCPVGRN--IHKAMDDRLEA 117 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A A + L ++ +V + I Sbjct: 118 AQAALENELKSTTLAQVVADTRKI 141 >gi|254476371|ref|ZP_05089757.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] gi|214030614|gb|EEB71449.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11] Length = 134 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 9/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A D S IA+ + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGRLREAGLLTSEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL R I+ DV A +E ++ + +C + L+K ++ + Sbjct: 61 AGGWRLARSPQDISFADVYLALDERLVASDEISE-------APACSVEHALQKRVSGVLE 113 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 + Q I+ L +SI ++ A Sbjct: 114 EIEQTLIQKL--GEASISEVRGA 134 >gi|315641499|ref|ZP_07896571.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315482787|gb|EFU73311.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 157 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 9/142 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LTK + G+ V+ P + I + S + KI++ LV +G+ +V G Sbjct: 1 MQLTKAFEQGVCVMAMLTTQMPSIPVASATIHQRLGTSPTYTQKIVRKLVVSGLATSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE----CFASHKIDCPL----VGSCGLTSVL 111 + GG L R + I+ LDVV+A E + L + + Sbjct: 61 QGGGFCLARASKDISCLDVVEAIEGKVVTFPDSQLLHHTFANSSRLVNLATANSIVYQAF 120 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 KA + + + L SI ++ + Sbjct: 121 AKADDQWRNALANVSIADIIHD 142 >gi|284989652|ref|YP_003408206.1| BadM/Rrf2 family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062897|gb|ADB73835.1| transcriptional regulator, BadM/Rrf2 family [Geodermatophilus obscurus DSM 43160] Length = 165 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T R DY +R + A +IA A I FL IL L A +V + RGR Sbjct: 6 RITARVDYAVRAAVELAAAAPGALTCDRIAAAQGIPSRFLQSILSDLQHARLVTSQRGRE 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAFFD 120 GG RL P +++I V++ E F+AE D G+ L SV A A+ Sbjct: 66 GGYRLALPPAEVSIARVMRV--EQGFLAEVHGQRPEDVEYSGTAVPLASVWVAAREAYRR 123 Query: 121 VLTQYSIECLVRNR 134 VL Q ++ +V Sbjct: 124 VLEQVTLADVVAGE 137 >gi|253754824|ref|YP_003027964.1| transcriptional regulator [Streptococcus suis BM407] gi|251817288|emb|CAZ55018.1| putative transcriptional regulator protein [Streptococcus suis BM407] Length = 139 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG Sbjct: 1 MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 GG RL + DQIT+L V +A E E + + C + + L S L A Sbjct: 61 I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNLSCQVGRNIHPLLDSRLENA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 +A + L + + L+ Sbjct: 120 QSALENELAKTRLADLLAE 138 >gi|225027880|ref|ZP_03717072.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353] gi|224954827|gb|EEG36036.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353] Length = 145 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L++ A+ +D ++IAE+ + ++ +++ L AGIV +G Sbjct: 1 MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L + AD+I + D+ +A E + DC + + + + N Sbjct: 60 HANAALAKSADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119 Query: 119 FDVLTQYSIECLVRN 133 + + +++ ++ Sbjct: 120 NEKMKSITLQDIIDR 134 >gi|159898645|ref|YP_001544892.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891684|gb|ABX04764.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon aurantiacus ATCC 23779] Length = 148 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L + + S IA + + + + +IL L +AG+V T G Sbjct: 1 MSASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG RL R AD+IT+ D+ ATE + +S DC + L+++ A A Sbjct: 61 DGGTRLARSADEITLNDIYHATENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAM 120 Query: 119 FDVLTQYSIECLVRN 133 VL S+ +V Sbjct: 121 QQVLANKSLAEVVNE 135 >gi|30795085|ref|NP_851535.1| hypothetical protein pSLA2-L_p113 [Streptomyces rochei] gi|30698458|dbj|BAC76571.1| hypothetical protein [Streptomyces rochei] Length = 143 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + +H D +A + + + + ++L + AG+V + RG G L Sbjct: 10 AAHALAWIELHRRIGDGTATSEGVAGSVNTNPVVIRRLLGRMRDAGLVHSRRGADAGWVL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124 RP + IT+ DV +A E S A + + CP+ + V + A L + Sbjct: 70 ARPLEDITLRDVYEAIEPSPLFAMHRSDPNLGCPVGSGIQPAMRPVYARVEEAVRAELAR 129 Query: 125 YSIECLVRN 133 ++ ++R+ Sbjct: 130 VTLAEVLRD 138 >gi|157692447|ref|YP_001486909.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157681205|gb|ABV62349.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 137 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R + ++ + A IAE+ + + K++ L +A ++E RG Sbjct: 3 QISSRYPIAVHIMSFIAGVPKE-CTGDFIAESVNSNPAIVRKMMAMLKRADLIEIRRGVG 61 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117 G L RPA++IT+LDV +A + E + F I CP+ + L S L++A A Sbjct: 62 GAY-LKRPAEEITLLDVYRAVDVSEDEELFN-FHQPVIACPIGQAMDTRLRSELKEAQAA 119 Query: 118 FFDVLTQYSIECLVRNRS 135 + L Q +I+ L+ Sbjct: 120 LENHLKQVTIQQLLTEAE 137 >gi|315651088|ref|ZP_07904122.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486678|gb|EFU77026.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 144 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 9/146 (6%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + + N+Y +A + + + + KIL L AG++ RG Sbjct: 1 MQISSKFTVALHIFTCVDTFGNEYKITSDFLAGSINTNPVIIRKILSQLKNAGLIMVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115 GGV + RP ++IT DV +A + E+ + A CP+ + L L+ Sbjct: 61 -TGGVEITRPLNEITFYDVYEAIDPVENGDLFSFHAGPNPQCPVGRNIHVLLDDKLKAVQ 119 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141 A + + +Y+++ L +S +K++ Sbjct: 120 LAMENEMKKYTLDDL---KSEMKELL 142 >gi|254454314|ref|ZP_05067751.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter antarcticus 238] gi|198268720|gb|EDY92990.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter antarcticus 238] Length = 142 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L A+ + +++ +S +L ++ L +AG+VE+VRG GG RL R Sbjct: 3 ALADIALQPVGTLVSLGELSRRQDVSLPYLEQLFVKLRRAGLVESVRGPGGGYRLARRTS 62 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130 I +++++ A +E+ A + +T+ L + L+A + L Q + + Sbjct: 63 DIRVVEILSAVDETVSAMHQGAGASGGSSGSRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122 Query: 131 VRN 133 V N Sbjct: 123 VDN 125 >gi|295705225|ref|YP_003598300.1| probably rrf2 family transcriptional regulator [Bacillus megaterium DSM 319] gi|294802884|gb|ADF39950.1| Transcriptional regulator, probably rrf2 family [Bacillus megaterium DSM 319] Length = 139 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 7/129 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ A D+ IA C + + KI+ L K +V T G GG L Sbjct: 8 AVHSLVFLANLPDHRASSESIAYNICTNPARVRKIMSTLRKNNLVRTKEGLGGGYTLGCS 67 Query: 70 ADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124 +I++ + + + C DC + + + +V+ + L Q Sbjct: 68 PAEISLGVIYRVISTGTLKPHWCSGDPDADCIVKSN--IQTVMDDIFTESEQSVIRHLDQ 125 Query: 125 YSIECLVRN 133 +IE +++ Sbjct: 126 ITIEDVLKK 134 >gi|327398553|ref|YP_004339422.1| BadM/Rrf2 family transcriptional regulator [Hippea maritima DSM 10411] gi|327181182|gb|AEA33363.1| transcriptional regulator, BadM/Rrf2 family [Hippea maritima DSM 10411] Length = 143 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + Y +R+L+ +++ P + +++E ISE +L ++ L K +++ +G Sbjct: 18 MKFPTKVRYSLRLLIEI-KNSNKPITLREVSEKTHISENYLKQLAAKLEKEKVIKGKKGP 76 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + P T+ +++ +A C C L+ C + + Sbjct: 77 NGGYTILNP--DFTLKELIDIFTGGVKLAPCMDDD-YRCELMDICKARDIWSQLNKDIDK 133 Query: 121 VLTQYSIEC 129 + ++ Sbjct: 134 LFLSVKLKD 142 >gi|323341640|ref|ZP_08081873.1| iron-sulfur cluster assembly transcription regulator IscR [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464065|gb|EFY09258.1| iron-sulfur cluster assembly transcription regulator IscR [Erysipelothrix rhusiopathiae ATCC 19414] Length = 141 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ RT YGI + Y I++ + IAE IS+++L ++ L +A +V+ V+G Sbjct: 1 MKLSARTRYGIAAMTYMHINDQELTTLVNIAEHLNISKIYLEQVFSSLKQANLVDAVKGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + + + +++ A E S F D ++ + T + A + Sbjct: 61 AGGYYL--KSKECNMFNILNALEPSLFE---KTPASTDDSIINAALCTHLYTPIDAALRE 115 Query: 121 VLTQYSI---ECLVRNRSS 136 L + L++N S Sbjct: 116 TLKGIKLKEIAELIKNESG 134 >gi|116628074|ref|YP_820693.1| Rrf2 family protein [Streptococcus thermophilus LMD-9] gi|116101351|gb|ABJ66497.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus thermophilus LMD-9] Length = 149 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R + +L A + N+ +A + ++ + + K L L KA ++ R Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMARSVGVNPVIIRKTLSQLKKADLIFVQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G GG L ++I +L V +A + S + + CP+ + + +L ++L Sbjct: 61 G-SGGATLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117 Query: 116 N----AFFDVLTQYSIECLVRNRSS 136 A L + ++ ++++ + Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKA 142 >gi|163734987|ref|ZP_02142424.1| transcriptional regulator, rrf2 family, putative [Roseobacter litoralis Och 149] gi|161391769|gb|EDQ16101.1| transcriptional regulator, rrf2 family, putative [Roseobacter litoralis Och 149] Length = 140 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + L + A + IAE + + + ++L L +AG++ + +G Sbjct: 1 MKRNSRLSLALHTLGHMAGDPAGVRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 GG RL R +IT+ DV A +ES C + + SVL + Sbjct: 61 AGGWRLAREPHEITLADVYLALDESLVATG-EQEVASSCSVENILQRKVASVLEDVERSL 119 Query: 119 FDVLTQYSIECL 130 + L +I + Sbjct: 120 VERLAATTIAEV 131 >gi|332367121|gb|EGJ44857.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 170 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 81 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157 >gi|55821356|ref|YP_139798.1| Rrf2 family protein [Streptococcus thermophilus LMG 18311] gi|55823278|ref|YP_141719.1| Rrf2 family protein [Streptococcus thermophilus CNRZ1066] gi|55737341|gb|AAV60983.1| conserved hypothetical protein, Rrf2 family protein [Streptococcus thermophilus LMG 18311] gi|55739263|gb|AAV62904.1| conserved hypothetical protein, Rrf2 family protein [Streptococcus thermophilus CNRZ1066] gi|312278675|gb|ADQ63332.1| Transcriptional regulator, BadM/Rrf2 family [Streptococcus thermophilus ND03] Length = 149 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R + +L A + N+ +A + ++ + + K L L KA ++ R Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMASSVGVNPVIIRKTLSQLKKADLIFVQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G GG L ++I +L V +A + S + + CP+ + + +L ++L Sbjct: 61 G-SGGSTLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117 Query: 116 N----AFFDVLTQYSIECLVRNRSS 136 A L + ++ ++++ + Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKA 142 >gi|172057569|ref|YP_001814029.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990090|gb|ACB61012.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 138 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R + +L A H D IA + + + + +++ L +AG++ TV G+ G Sbjct: 2 INSRLAVSVHILALIATHPDQALSSDYIAGSVNTNPVVIRRLIGSLRQAGLLSTVAGKSG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 L + IT+L + +A E + CP+ L +A A Sbjct: 62 -ATLTKDPQDITLLMIYRAVEPKETLFSMHEQPNPACPVGRDIQSTLNQSFTRAQQALEA 120 Query: 121 VLTQYSIECLVRN 133 L ++ ++ Sbjct: 121 ELGTETLADILHR 133 >gi|90021696|ref|YP_527523.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus degradans 2-40] gi|89951296|gb|ABD81311.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus degradans 2-40] Length = 138 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L + A +D P +QIA+ + + + + + L + G VE+ +GR GG + RP Sbjct: 11 LHILAHLAT-SDEPVTSTQIAKFQSTNPVVVRRTMGLLREHGYVESTKGRNGGWAISRPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128 IT+LD+ +A ES CP+ S L +V+ + + +++ Sbjct: 70 SDITLLDIHRAFGESSLFTIGLTDEHAHCPIEKSINESLAAVMNETEALLLKRFGEITLD 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALYKQ 134 >gi|327460982|gb|EGF07315.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 170 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 81 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157 >gi|257460830|ref|ZP_05625931.1| transcriptional regulator family protein [Campylobacter gracilis RM3268] gi|257442161|gb|EEV17303.1| transcriptional regulator family protein [Campylobacter gracilis RM3268] Length = 136 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +++ A + +A + I+ K++ L A +V T G Sbjct: 1 MQVGIKFSLAVHIMLCVAYFREEKVTGDFVAASSGINPAIARKLISQLKNAALVLTTAGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118 GG+ L R A IT+LD+ +A E + CP+ G L + N F Sbjct: 61 -GGITLARDARLITLLDIYEAVSEEDAMFRLHKGSPSACPVGGKIEAVLAPRFARIQNDF 119 Query: 119 FDVLTQYSIECLVRN 133 L+ S+ L+ + Sbjct: 120 KKSLSSVSLADLLSD 134 >gi|262066052|ref|ZP_06025664.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693] gi|291380302|gb|EFE87820.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693] Length = 144 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 13/148 (8%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + NDY +A + + + + KIL L AG++ RG Sbjct: 1 MQISSRFTIALHIFTCVETFKNDYKITSDFLARSINTNPVIIRKILTQLKNAGLITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113 GG+ RP +I+ DV +A E E+ + ++ CP+ + + ++L Sbjct: 61 -TGGISPTRPLKEISFYDVYQAIEPVENGDLFNFHSNPNPQCPVGKN--IHALLDDKLKT 117 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIF 141 A + + +Y+++ L R ++++ Sbjct: 118 IQLAMENEMKKYTLDDL---RIGMQELL 142 >gi|325690774|gb|EGD32775.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK115] gi|332358975|gb|EGJ36796.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK49] Length = 169 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 81 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157 >gi|86605908|ref|YP_474671.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab] gi|86554450|gb|ABC99408.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab] Length = 146 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H+ +I +IA I + +L ++L L + G+V + RG +GG L RP QI++LD++ Sbjct: 22 HDGRVLQIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGAKGGYSLARPPWQISLLDII 81 Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 +A E + D L + A A +L + +++ L Sbjct: 82 QAIEGE-DLTRPRDLPSGDLSPERQ-VLWQAWQDAQAAAVGILQKTTLQDLCD 132 >gi|227893626|ref|ZP_04011431.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227864486|gb|EEJ71907.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 154 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ P IA + S + + K++ L KAG++ET G Sbjct: 1 MKVSTRFSDAIHLLAFIHIYKGQIPLSSENIAGSIETSPVMVRKLMSELRKAGLIETKHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 +L +P DQI++LDV A E+ + E C + G+ L +A A Sbjct: 61 TP-DPKLAKPTDQISLLDVYLAVEKDKPLFEIDHKTNPQCIVGGNIQATLKEYYHQAEVA 119 Query: 118 FFDVLTQYSIECLVR 132 L + +V Sbjct: 120 AKAKLNNIKLSDVVD 134 >gi|26553766|ref|NP_757700.1| hypothetical protein MYPE3120 [Mycoplasma penetrans HF-2] gi|26453773|dbj|BAC44104.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 143 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I + + D+ +A + ++ + + KIL L +G++E RG Sbjct: 1 MQISSRFTIAIHIFVCIKTFEEDHKITSEFLASSTNVNPVIIRKILLQLKSSGLIEVQRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113 GG + +P DQI+ LD+ KA E E + + +CP+ + + ++L Sbjct: 61 -SGGSSIAKPLDQISFLDIYKAVECIEKGKLFHFHENPNQECPVGKN--IHNILDDKLEQ 117 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A D L + +++ ++ + Sbjct: 118 VQKALEDELKKITLDQVIND 137 >gi|153812075|ref|ZP_01964743.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174] gi|149831730|gb|EDM86816.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174] Length = 149 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + V++ AI+ + + IAE+ + F+ +++ L KA ++ +V G Sbjct: 1 MKYSTKLSDTVHVMVLIAINQEKSLSSASIAESVHTNPGFVRQLMLKLKKAELMTSVAG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L +PA+QIT+LD+ KA E + DC + + L + Sbjct: 60 HARPSLSKPAEQITLLDIYKAVEGDKPLLHLDTHTNPDCGVGINIQLSLQGFYNEIQKDA 119 Query: 119 FDVLTQYSIECLVR---NRSSIKKIFN 142 + + +++ ++ R+SI+ Sbjct: 120 EEKMNTITLQDIIDTYYQRTSIENNLQ 146 >gi|167464005|ref|ZP_02329094.1| transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 76 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 + IAE +SE +L +++ PL AG+V+++RG GG L RPA+QIT +++ E Sbjct: 5 TSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQITTGQIIRVLEG 64 Query: 85 SFFVAE 90 + Sbjct: 65 PISPVD 70 >gi|223040323|ref|ZP_03610599.1| RRF2 family protein [Campylobacter rectus RM3267] gi|222878392|gb|EEF13497.1| RRF2 family protein [Campylobacter rectus RM3267] Length = 138 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 4/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + ++ I +L+ C D N +A + + + I++ L A ++ G Sbjct: 1 MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTVGTNPVIVRNIIRLLKSANLINVSAG- 59 Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG L + DQIT+ D+ A E + + + CPL G LT A A Sbjct: 60 TGGASLAKKPDQITLFDIFSAVNEGENGIFKIHKNSPPPCPLGGRIEALLTPKFASAQRA 119 Query: 118 FFDVLTQYSIECLVRN 133 FD L +++ L+ Sbjct: 120 MFDSLAGVNLQNLLDE 135 >gi|300811188|ref|ZP_07091698.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497832|gb|EFK32844.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 148 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 6/147 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T I +L+ A +A + + ++ K++ L GI+ + RG+ Sbjct: 1 MRDTKYT-VAIHILVMLATSP-RDLNSDDLARSVGTNASYIRKVMALLKDHGIIASQRGK 58 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117 G RL + + +++L++ +A + + + CP+ + + L +A Sbjct: 59 SG-TRLLKRPEDLSLLEIYQAVNGDDVEIFQIHQNPNPTCPVGKNIKEAVFPFLDEAERQ 117 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 + L + S+ ++ + +AG Sbjct: 118 LKETLAKDSLADVIDRLKQAAEETDAG 144 >gi|294499841|ref|YP_003563541.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294349778|gb|ADE70107.1| Transcriptional regulator, probably rrf2 family [Bacillus megaterium QM B1551] Length = 139 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 7/129 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ A D+ IA C + + KI+ L K +V T G GG L Sbjct: 8 AVHSLVFLANLPDHRASSESIAYNICTNPARVRKIMSTLRKNNLVRTKEGLGGGYTLGCS 67 Query: 70 ADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124 +I++ + + + C DC + + + +V+ + L Q Sbjct: 68 PAEISLGLIYRVISTGTLKPHWCSGDPDADCIVKSN--IQTVMDDIFTESEQSVIRHLDQ 125 Query: 125 YSIECLVRN 133 +IE +++ Sbjct: 126 ITIEDVLKK 134 >gi|296125727|ref|YP_003632979.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017543|gb|ADG70780.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii DSM 12563] Length = 140 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + L+ D + I+E+ ++ + + IL L KA I+ RG Sbjct: 1 MKISSRFTIAVHTLLCILEFKDEKITSNFISESVQVNPVIIRNILIQLQKADIITVKRG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 GG+ L + + IT+LD+ A E + + + CP+ G+ L L Sbjct: 60 TGGISLNKKTENITLLDIFNAVESLDEGKLFSFHENPNKKCPVGGNINKILQPKLDSVQY 119 Query: 117 AFFDVLTQYSIECL 130 A L + +++ + Sbjct: 120 AMEKELKKTTLKDI 133 >gi|323351192|ref|ZP_08086848.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322122416|gb|EFX94127.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 169 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 81 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157 >gi|298248776|ref|ZP_06972581.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] gi|297551435|gb|EFH85301.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter racemifer DSM 44963] Length = 164 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 4/137 (2%) Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + +L M A QIA + + +F+ +IL L KA +V Sbjct: 1 MRANTHFTVALHILTWMALASQQQEIMTSDQIAGSVNTNPVFIRRILGRLHKAHLVNVHH 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 G G L +P ++I++L+V +A E+ C + L A Sbjct: 61 GTSAGWTLAQPPEKISLLEVYQAVEQEPLFELHHTPPNQGCVVGKGIQPALKRFYSDAEA 120 Query: 117 AFFDVLTQYSIECLVRN 133 A Q S+ ++ Sbjct: 121 AMQQQFAQVSVADVLDE 137 >gi|171778450|ref|ZP_02919608.1| hypothetical protein STRINF_00459 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282851|gb|EDT48275.1| hypothetical protein STRINF_00459 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 149 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R + +L A + N+ +A + ++ + + K L L KA ++ R Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMASSVGVNPVIIRKTLSQLKKADLIFVQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR--- 112 G GG L ++I +L V +A + S + + CP+ + + +L Sbjct: 61 G-SGGATLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117 Query: 113 -KALNAFFDVLTQYSIECLVRN 133 A L + ++ ++++ Sbjct: 118 GDVQMAMEKELEKKTLAGILKD 139 >gi|296126632|ref|YP_003633884.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018448|gb|ADG71685.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii DSM 12563] Length = 149 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ + + +Y +I + IAE +S L K+LQ LVKAG + + +G G Sbjct: 4 ISEASAIALHSAVYISIK--EFASLKDIAERFDVSSNHLSKVLQALVKAGYLTSSKGPAG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G ++ + + L++ + E + C K D +C + ++ F + + Sbjct: 62 GFKIAEGKENTSFLEIYETIEGKNWQRSCLFHSKCD-KYCSNCIMGDLVNDINRKFKNYM 120 Query: 123 TQYSIEC 129 ++I+ Sbjct: 121 ESHTIKD 127 >gi|154484942|ref|ZP_02027390.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC 27560] gi|149733895|gb|EDM50014.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC 27560] Length = 143 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + NDY +A + ++ + + KIL L A ++E RG Sbjct: 1 MQISSRFTVAVHIFACIKTFENDYKITSDFLAGSTNVNPVIIRKILGQLKGADLIEVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113 GG ++ RP ++IT+LDV KA E E + + CP+ S + +VL + Sbjct: 61 -TGGAKITRPLNEITLLDVYKAVECVEGGELFHFHENPNPQCPVGRS--IHTVLDGKLEQ 117 Query: 114 ALNAFFDVLTQYSIECL 130 A L ++E + Sbjct: 118 VQKAMEKELNSITLEDV 134 >gi|324991473|gb|EGC23406.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK353] Length = 164 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 15 MQISSRFTIATHMLIVLALEGKKQKLTSDILASSVGVNPVIIRKTLSQLKNAGMITVARG 74 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 75 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 131 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 132 AIQAAMEAELAQTSLDEVVA 151 >gi|306833586|ref|ZP_07466713.1| transcriptional regulator superfamily protein [Streptococcus bovis ATCC 700338] gi|304424356|gb|EFM27495.1| transcriptional regulator superfamily protein [Streptococcus bovis ATCC 700338] Length = 159 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K + + VL A+ ++ P + +++ +S+ +L KIL L +AG++++ Sbjct: 1 MKLNKSFEQAVYVLTMLALQENHTPVKSRVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 + GG +L + IT+ DV A + V E H + + V K Sbjct: 61 KVGGYQLAQSVTTITLKDVFFALDLQANVIE--FKHMAHHIYDDTSHVKQVENKVQQTLE 118 Query: 117 ----AFFDVLTQYSIECLVRNRS 135 AF+ L +I L++ + Sbjct: 119 KGLFAFYHELDTLTIADLLQEEA 141 >gi|222053320|ref|YP_002535682.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] gi|221562609|gb|ACM18581.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32] Length = 146 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 2/133 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + G+ ++ A + + IAE IS L K+++ LV G+V+ +RG Sbjct: 1 MKLNKASLLGLIAVLELADDPEQQLSTTDIAEKYDISTHHLAKVMRNLVHKGVVQAMRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG R ++ T+LD+++ E + K P++ L S+ + + Sbjct: 61 GGGYRFAGNPNRTTLLDIIQLFETMESELDLPHWSKAADPIISE--LQSITNEIDDVTKA 118 Query: 121 VLTQYSIECLVRN 133 +L ++ ++N Sbjct: 119 ILETITLSAALKN 131 >gi|116511357|ref|YP_808573.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107011|gb|ABJ72151.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis subsp. cremoris SK11] Length = 156 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115 + GG L + I+ DV A E + + + + C +T+ L + Sbjct: 61 KNGGFSLNKDLLDISFYDVFLAIEGRGRIFQSQGLLQNFIGAESGKAQHCAITTALDEIE 120 Query: 116 NAFFDVLTQYSIECLVRN 133 N L+ S+ + Sbjct: 121 NTLVRTLSNVSLAQVADE 138 >gi|315222502|ref|ZP_07864391.1| Rrf2 family protein [Streptococcus anginosus F0211] gi|315188188|gb|EFU21914.1| Rrf2 family protein [Streptococcus anginosus F0211] Length = 149 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 8/146 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L A+ ++ +A++ ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLTVIALECQEHKVTSDFLADSVGVNPVIIRKTLSQLKSAGLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 GG + + IT+LDV +A E +S + CP+ + L L + Sbjct: 61 -TGGAVIMKDLKDITLLDVYQAVECLGKSGQLFSFHEHPNPSCPIGRNIHLVLDDKLAEI 119 Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139 A L++ S+ +V + + I+K Sbjct: 120 QAAMEKELSKTSLADVVASAQEEIQK 145 >gi|319946559|ref|ZP_08020794.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747305|gb|EFV99563.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 149 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 11/148 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R G VL+ A+ D IA + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIGTHVLVMIALKGDCTKVTSDMIAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + + I++LD+ +A E ++ + CP+ S + VL Sbjct: 61 -TGGAEMAKELEDISLLDIYQAVECLGKTGQLFGFHEHPNPACPIGNS--IHGVLDGKLE 117 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKI 140 K A + Q S++ +V ++ Sbjct: 118 KIQLAMEKEMAQTSLKEVVEQTKKQMEL 145 >gi|322374098|ref|ZP_08048632.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. C150] gi|321277064|gb|EFX54135.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp. C150] Length = 159 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + I VL+ + ++E +S+ +L KI++ L G+V++VRG Sbjct: 1 MRLSSGWEQSIYVLLMLDQLPEGKYINSVFLSERLGVSDSYLKKIIKLLDNEGLVKSVRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 + GG+ L +P +I+ DV A E + E + C +T+ L Sbjct: 61 KNGGIALSKPLSKISFYDVFVAIEGKNRIFESQNLLKKFLGDEEGSRAKKCVVTNSLDVI 120 Query: 115 LNAFFDVLTQYSIECLV 131 N L ++ + Sbjct: 121 ENTLVSTLISITLSQVA 137 >gi|322388749|ref|ZP_08062346.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140368|gb|EFX35876.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 143 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +AE+ + ++ K++ L AG++ + +G+ G Sbjct: 3 TKFSVSLHILTMISESKET-LSSQALAESVGTNASYIRKVIALLKNAGLITSHQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120 +L + ++T+L++ AT+E + + DCP+ ++ + A Sbjct: 61 QLSKSPKEVTLLEIYFATQEVSHISLFPVHQNSNPDCPVGKHIQAAVSPLFASAEAQLEK 120 Query: 121 VLTQYSIECLVRN 133 L Q ++E ++ N Sbjct: 121 ELAQQTLEDVINN 133 >gi|116669822|ref|YP_830755.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24] gi|116609931|gb|ABK02655.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24] Length = 136 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 +++AE + +L K LQ LV+AGI+ +V G RGG +L R A+ IT+LDVV A E Sbjct: 1 MNSARLAELYQLPAAYLNKQLQALVRAGILYSVSGPRGGFQLARGAETITVLDVVLAIEG 60 Query: 85 SFFVAEC---FASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 C A+ P SC ++ +R+A A+ L++ +I + + Sbjct: 61 PDPAFRCESILANAPGADPGEDYLRSCLVSQTMRQAELAWRQTLSRQTIAGIAAS 115 >gi|300932585|ref|ZP_07147841.1| transcriptional regulator, BadM/Rrf2 family protein [Corynebacterium resistens DSM 45100] Length = 133 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 + S IA + + K++ L + G+V + RGR GG+ L A + +++ E Sbjct: 20 HTSSSIAHNIGAPQTHVAKVVSKLAELGMVNSTRGRTGGIVLTPEARTKKLGTLMQELEG 79 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 CP C L VL+ A FFD L + +I +V + K+ Sbjct: 80 PRLSN---YRVHDPCPFDPECQLHGVLQLAAQQFFDHLDKTTINDIVPEFPAKAKL 132 >gi|24215428|ref|NP_712909.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657165|ref|YP_001251.1| hypothetical protein LIC11283 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196551|gb|AAN49927.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600403|gb|AAS69888.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 139 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 1/132 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T R I +L ++ ++AE+ + + + KIL L GIV G G Sbjct: 1 MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNQGIVRNQMGPNG 60 Query: 63 GVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 G L + I + ++ +A +E F + + K C L+ V KA + Sbjct: 61 GYVLAKTPASINLKEIYEAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEEE 120 Query: 122 LTQYSIECLVRN 133 L ++ + + Sbjct: 121 LGSTDLDSITKE 132 >gi|319938822|ref|ZP_08013186.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV] gi|319811872|gb|EFW08138.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV] Length = 145 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 8/146 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L A+ + +A++ ++ + + KIL L A ++ RG Sbjct: 1 MQISSRFTIATHMLTVIALECQKHKVTSDFLADSVGVNPVIIRKILSQLKSADLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 R GG + + IT+LDV +A E +S + CP+ + L L + Sbjct: 61 R-GGAIIRKDLKDITLLDVYQAVESLGKSGQLFSFHEHPNPSCPIGRNIHFVLDDKLAEI 119 Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139 A L++ S+ +V + + IKK Sbjct: 120 QAAMEKELSKTSLADVVASAQEKIKK 145 >gi|152990511|ref|YP_001356233.1| transcriptional regulator [Nitratiruptor sp. SB155-2] gi|151422372|dbj|BAF69876.1| transcriptional regulator [Nitratiruptor sp. SB155-2] Length = 138 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 13/133 (9%) Query: 1 MHL-TKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + + Y I + H + P + IA+ I + FL +IL L K+GIV+++ Sbjct: 1 MALVSAKGSYAIAAIFVLYEHYNENKPLKTELIAKLGSIPKNFLEQILLDLKKSGIVKSI 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG +GG L +P +I ++D++ + E C + + L ++ Sbjct: 61 RGAKGGYILAKPPKEILLIDIINSVEPECCTGICRTQNPV---------LEALWSDFNKT 111 Query: 118 FFDVLTQ-YSIEC 129 + L++ +I Sbjct: 112 IQNFLSRPITIFD 124 >gi|306819699|ref|ZP_07453360.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552265|gb|EFM40195.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 146 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 13/148 (8%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + +DY +A + + + + KIL L AG++ RG Sbjct: 1 MQISSRFTVALHIFTCVDTFKDDYKITSDFLAGSINTNPVIIRKILTQLKNAGLITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN- 116 GG+ R +I+ DV +A E E+ + S +CP+ + + ++L L Sbjct: 61 -TGGITPTRDLKEISFYDVYQAIEPVENGDLFNFHNSPNPNCPVGRN--IHALLDDKLKA 117 Query: 117 ---AFFDVLTQYSIECLVRNRSSIKKIF 141 A D + +YSI+ L RS ++++ Sbjct: 118 IQVAMEDEMKKYSIDDL---RSGMQELL 142 >gi|260062075|ref|YP_003195155.1| rrf2 family protein [Robiginitalea biformata HTCC2501] gi|88783637|gb|EAR14808.1| rrf2 family protein (putative transcriptional regulator) [Robiginitalea biformata HTCC2501] Length = 144 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR ++Y A + + +IA+A F KILQ L + G+V++V+G Sbjct: 2 FSKACEYGIRAVVYIAHKSLEGQRVSLKEIADAIDSPVAFTAKILQQLSRNGLVDSVKGA 61 Query: 61 RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + ++ + D+V + + C K C C + + + Sbjct: 62 SGGFEMSEGRIREVRLADIVSVVDGNRVYEGCGLGLK-KCNEHKPCPVHWEFVEVRDRLK 120 Query: 120 DVLTQYSIECL 130 +L SI + Sbjct: 121 ALLETTSIHDM 131 >gi|332358706|gb|EGJ36529.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK355] Length = 150 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137 >gi|322382580|ref|ZP_08056458.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae B-3650] gi|321153435|gb|EFX45842.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae B-3650] Length = 148 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 3/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L + L+ + +IA C + KI+ L KAG V+T G G Sbjct: 6 LNSEFTIAVHSLVLLSHLPGQMATSGEIAANVCTHAARIRKIMGMLRKAGYVKTKEGFGG 65 Query: 63 GVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119 G L D +T+ D+ + T S C CP+ + + + A Sbjct: 66 GFLLNCDPDAVTLADIYRVTSAGSLKPYWCTGDKSQSCPVSSNMQDVMNRLFCDAEKHME 125 Query: 120 DVLTQYSIECLVRN 133 L ++ ++ Sbjct: 126 QYLAGRTLGDVLHE 139 >gi|309799014|ref|ZP_07693270.1| Rrf2 family protein [Streptococcus infantis SK1302] gi|308117364|gb|EFO54784.1| Rrf2 family protein [Streptococcus infantis SK1302] Length = 145 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQISSRFTIATHMLIIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + + I++LDV +A E ++ + + CP+ + + VL + L Sbjct: 61 -TGGAEIIKDLEDISLLDVYQAVECLGKTGQLFSFHDNPNPACPVGSN--IHGVLDEKLQ 117 Query: 117 ----AFFDVLTQYSIECLVRNRSS 136 A L+Q S+ +V + S Sbjct: 118 KIQLAMEQELSQTSLAQVVADAES 141 >gi|225018040|ref|ZP_03707232.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum DSM 5476] gi|224949186|gb|EEG30395.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum DSM 5476] Length = 153 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R + L++ + +D ++A + + + + K+L L KAG++E G Sbjct: 1 MKISSRFTVAVHCLLFISC-SDEKITSEKLAASVNTNPVVIRKVLGKLKKAGLIEVYSG- 58 Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 GG L +PA IT+LD+ A + + + ++C + L++ L+ A Sbjct: 59 TGGAALLKPASSITLLDIFHAADVVDDNQLFS-LHDPNLECAVGKEVLPLLSNPLKTAQQ 117 Query: 117 AFFDVLTQYSIECLVRN 133 A L + ++ L+ Sbjct: 118 ALESSLEKTTLADLLDQ 134 >gi|325694827|gb|EGD36732.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK150] Length = 160 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 71 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 128 AIQAAMEAELAQTSLDEVVA 147 >gi|291519431|emb|CBK74652.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio fibrisolvens 16/4] Length = 144 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + VL+ ND +A + ++ + ++LQ L KA IV RG Sbjct: 1 MQISSRFTIAVHVLIAIETFKNDNKITSEFLASSANVNPTVIRRLLQQLKKAEIVTVKRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113 GG + + +IT+LDV A E E+ + + CP+ + + ++ + Sbjct: 61 -SGGADIEKSLTEITLLDVYNAVEPVENGQLFHFHENPNELCPVGRN--IHRIMDHRLEE 117 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 NA D + + +I ++ + + + Sbjct: 118 IQNAMEDKMRRITIADVMADANKL 141 >gi|226324094|ref|ZP_03799612.1| hypothetical protein COPCOM_01872 [Coprococcus comes ATCC 27758] gi|225207643|gb|EEG89997.1| hypothetical protein COPCOM_01872 [Coprococcus comes ATCC 27758] Length = 135 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + Y +RV++ A H D +++IA ISE +L +L+ LVK +++ RG+ Sbjct: 2 ISTKGRYALRVMIDLAQHKDEEYVPLNEIAIRQEISEKYLEIVLKILVKKKLLKGRRGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R + + TI ++++ E + C C C + +K D Sbjct: 62 GGYQLTRESSEYTIGEILELAEGNLATVACLVPGAEVCSREEQCITLPLWKKFDGMVHDF 121 Query: 122 LTQYSIECLVRNR 134 + ++E ++ Sbjct: 122 FYEITLEDVLNGN 134 >gi|56963162|ref|YP_174890.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909402|dbj|BAD63929.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 148 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 2/127 (1%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 Y ++ L++ + ++IAE C ++L LVKAGIVE GR GG L R Sbjct: 17 YALQSLVFMSGQQKSHCASNEIAEHVCSEATLTRRVLSRLVKAGIVEAREGREGGYALRR 76 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 + I+ DV +A + + P T+V+ ++ VL +++ Sbjct: 77 KPEDISFADVYRAIQVVDPLYTGLLDTTTSGPFAQETREMFTTVINESEKQLIQVLERHT 136 Query: 127 IECLVRN 133 I L++ Sbjct: 137 IADLIKK 143 >gi|52082199|ref|YP_080990.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52787590|ref|YP_093419.1| YwnA [Bacillus licheniformis ATCC 14580] gi|319648073|ref|ZP_08002290.1| YwnA protein [Bacillus sp. BT1B_CT2] gi|52005410|gb|AAU25352.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52350092|gb|AAU42726.1| YwnA [Bacillus licheniformis ATCC 14580] gi|317389708|gb|EFV70518.1| YwnA protein [Bacillus sp. BT1B_CT2] Length = 133 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I +L A + IA + + + + +++ L KAGI+ + G G L R Sbjct: 9 AIHILSLIAANPRE--SSEMIAGSVNTNPVVIRRMISQLKKAGILTSRPGVAG-ASLKRD 65 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSI 127 + I++LD+ +A + + +CP+ T A + L S+ Sbjct: 66 PEDISLLDIYRAVQPHEELFAIHDKPNPNCPVGRQIQTTLDQTFHSVQQAMENELASKSL 125 Query: 128 ECLV 131 + ++ Sbjct: 126 KDVL 129 >gi|295835500|ref|ZP_06822433.1| Rrf2 family protein [Streptomyces sp. SPB74] gi|197698596|gb|EDY45529.1| Rrf2 family protein [Streptomyces sp. SPB74] Length = 156 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L++ +H QIA + + + + ++L + +AG+V + RG G RL Sbjct: 10 AAHALVWIELHCRAGHEVATSEQIAGSVNTNPVVIRRLLGRMREAGLVCSRRGSDAGWRL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVL 122 RP + +T+ DV +A E S A +CP+ CG+ +R +A A L Sbjct: 70 LRPLESMTLRDVYEAIEPSPLFELHRAEPNPECPVG--CGIKPAMRTVYDRAEEAVRAEL 127 Query: 123 TQYSIECLVRN 133 + +++ ++R+ Sbjct: 128 GRVTLDEVLRD 138 >gi|325696155|gb|EGD38046.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK160] Length = 149 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137 >gi|268609517|ref|ZP_06143244.1| hypothetical protein RflaF_08475 [Ruminococcus flavefaciens FD-1] Length = 145 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 10/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + + +L I ++ + ++ + + +L L GIVET +G Sbjct: 1 MQITSKFTVAVHILTCIDIFGSQMRVTSDFLSGSTGVNAVIVRNVLGQLRNTGIVETRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113 GG L + D+IT+ D+ KA + + + + +CP+ + + + Sbjct: 61 -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNAECPVGRN--IHKAMDDRLEA 117 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A A + L ++ +V + I Sbjct: 118 AQAALENELKSTTLAQVVADTRKI 141 >gi|288905395|ref|YP_003430617.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306831475|ref|ZP_07464633.1| transcriptional regulator superfamily protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978384|ref|YP_004288100.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732121|emb|CBI13686.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304426260|gb|EFM29374.1| transcriptional regulator superfamily protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178312|emb|CBZ48356.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 159 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K + + VL A+ ++ P + +++ +S+ +L KIL L +AG++++ Sbjct: 1 MKLNKSFEQAVYVLTMLALQENHTPVKSHVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116 + GG +L + IT+ DV A + V E H + + V K Sbjct: 61 KVGGYQLAQSVTTITLKDVFFALDLQANVIE--FKHMAHHIYDDTSHVKQVENKVQQTLE 118 Query: 117 ----AFFDVLTQYSIECLVRNRS 135 AF+ L +I L++ + Sbjct: 119 KGLFAFYHELDTLTIADLLQEEA 141 >gi|324993824|gb|EGC25743.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994855|gb|EGC26768.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK678] gi|327474699|gb|EGF20104.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK408] gi|328946722|gb|EGG40860.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 159 Score = 93.9 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 71 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 128 AIQAAMEAELAQTSLDEVVA 147 >gi|332653243|ref|ZP_08418988.1| Rrf2 family protein [Ruminococcaceae bacterium D16] gi|332518389|gb|EGJ47992.1| Rrf2 family protein [Ruminococcaceae bacterium D16] Length = 147 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L + ++ ++IAE+ + ++ +++ L AGI+ + +G Sbjct: 1 MKYSTKLSDALHILAFLSMGAGQRITSAKIAESVKTNPAYIRQLMAALKSAGIITSSQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118 + L R +IT+LDV +A E + + +C + + ++ A Sbjct: 60 QANAELTRQPGEITVLDVYRAIEGNKPLLHWDIDTNPECGVGIYVQLSIADFYQEIQRAA 119 Query: 119 FDVLTQYSIECLVRN 133 + +++ ++ Sbjct: 120 EQKMQTITLQDIIDR 134 >gi|291545297|emb|CBL18406.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp. 18P13] Length = 147 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L+ D +A + + + + K+L L AG+VE RG Sbjct: 1 MQISSRFTLAVHILLCLDTFRDQYKVTSEFLAGSTNVHPVMIRKLLGQLKTAGLVEVTRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113 GG + +P +QIT+LDV +A + ++ + CP+ + + V L + Sbjct: 61 -SGGASIAKPLEQITLLDVYRAVDSVDADSLFHFHEKPNQLCPVGRN--VHGVLDPCLAR 117 Query: 114 ALNAFFDVLTQYSIECL 130 A +A L ++ + Sbjct: 118 AQHAMERELQSVTMAQV 134 >gi|153811085|ref|ZP_01963753.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174] gi|149832973|gb|EDM88056.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174] Length = 145 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 62/145 (42%), Gaps = 4/145 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L++ A+ +D ++IAE+ + ++ +++ L AGI+ +G Sbjct: 1 MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIIVNTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L + AD+I + D+ +A E + DC + + + + N Sbjct: 60 HANAALAKSADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119 Query: 119 FDVLTQYSIECLVRNRS-SIKKIFN 142 + +++ ++ I+K+ N Sbjct: 120 DKKMKSITLQDIIDRYYFKIRKVKN 144 >gi|146300166|ref|YP_001194757.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154584|gb|ABQ05438.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium johnsoniae UW101] Length = 149 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 4/132 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR ++ A + R I +A+ E F KI+Q L K GI+ + +G Sbjct: 2 FSKACEYGIRASIFIATKSSKGIRVGIKDVAKEIDSPEPFTAKIMQILTKNGIIHSAKGV 61 Query: 61 RGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + A I ++ +V A + C K +C C + +K Sbjct: 62 GGGFEVSKEALKSIKLIQIVDAIDGDKIYRGCGIGLK-ECSEEHPCPVHFEFKKIRGLLL 120 Query: 120 DVLTQYSIECLV 131 +L+ ++E L Sbjct: 121 QMLSTTTLEQLA 132 >gi|257870322|ref|ZP_05649975.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257804486|gb|EEV33308.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 141 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y + +IA++ + ++ +I+ L AG++E+ RG+ Sbjct: 1 MKYSTKYSDAIHILAYIEMLKGTDLSSDRIAQSVETNPAYVRRIMSDLRTAGLIESQRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALN 116 +L + ++IT+LD+ + E+ + +C + GS + VL + Sbjct: 61 A-EPKLLKKPEEITLLDIYSSVEKDQRLLHIDKKTNPNCLIGGS--IQEVLDETYERLQK 117 Query: 117 AFFDVLTQYSIECLVRN 133 + Q ++ ++ Sbjct: 118 KIELEMQQITLADIIDK 134 >gi|194289994|ref|YP_002005901.1| transcriptional regulator hth rrf2-type DNA-binding domain [Cupriavidus taiwanensis LMG 19424] gi|193223829|emb|CAQ69836.1| putative transcriptional regulator, HTH rrf2-type DNA-binding domain [Cupriavidus taiwanensis LMG 19424] Length = 144 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG+V T G Sbjct: 1 MSTSSRFAVAVHILTLLASSAE-PLPSSLIAGSVGTNPALIRRLVGQLAEAGLVATTMGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPA IT+L+V + E + +A ++ C + L V +A A Sbjct: 60 TGGATLARPAASITLLEVFRVVETTALIALHQSAPNPACLVGREITGALRKVADRAQAAM 119 Query: 119 FDVLTQYSIECLVRN 133 + L +I ++ + Sbjct: 120 DETLAGITIASMLAD 134 >gi|322387140|ref|ZP_08060750.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321141669|gb|EFX37164.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 143 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQISSRFTIATHMLVIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKADLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + + I++LD+ +A E ++ + + DCP+ + + VL + Sbjct: 61 -TGGAEIIKELEDISLLDIYQAVECLGKTGQLFSFHDNPNPDCPVGAN--IHGVLDEKLD 117 Query: 114 -ALNAFFDVLTQYSIECLVRNRSS 136 A + L+Q S+ +V + + Sbjct: 118 KIQEAMEEELSQTSLARVVADAEA 141 >gi|290579608|ref|YP_003484000.1| hypothetical protein SmuNN2025_0082 [Streptococcus mutans NN2025] gi|254996507|dbj|BAH87108.1| hypothetical protein [Streptococcus mutans NN2025] Length = 157 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + + VL+ + D ++ S +L KI++ LV G++ ++ G Sbjct: 1 MKLSSGWEQSVYVLLILSQLPDSKTINSQSLSLRLGTSHSYLKKIIKLLVNEGLITSIPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 + GG L + + IT DV A E + + + C +T L Sbjct: 61 KYGGFSLAKSLEDITFYDVFIAVEGRGKIFASQQLLKKFLGENEGKKAQKCAVTDSLDII 120 Query: 115 LNAFFDVLTQYSIECL 130 N L+ S+ + Sbjct: 121 ENTLVTTLSSISLAQV 136 >gi|323137246|ref|ZP_08072325.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] gi|322397604|gb|EFY00127.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC 49242] Length = 147 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 1 MHL-TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + + + + A+H P ++A + L +LQ LV+AGI+++VR Sbjct: 1 MRLLPRSARFALMAALDVALHARGRPVPSKELAARHDLPPRRLETLLQALVRAGILKSVR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 G GG L R ++ + ++V+ + P + + L V+ +A + Sbjct: 61 GPAGGYELARERRRLCVGEIVRV------ALRAEEEDENQSPALLAAVLEPVIAQAEESA 114 Query: 119 FDVLTQYSIECL 130 L + ++E L Sbjct: 115 LARLDEITLEDL 126 >gi|225374493|ref|ZP_03751714.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM 16841] gi|225213731|gb|EEG96085.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM 16841] Length = 139 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ TDY +R+L A+ + + + + I E + + F +KI+ L K G+V++VRG Sbjct: 1 MIITRETDYALRILR--ALSDGHRHTMKNICEEAVVPQQFAYKIIAKLAKGGVVDSVRGS 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKALN 116 GG L ++++ +++ + + C AS +C C + L + Sbjct: 59 GGGCLLDCDLRELSLYRLLEIMGDDDRINACMASE-YECSWEKKCRKHCEIRRKLCRIQM 117 Query: 117 AFFDVLTQYSI 127 L Q+S+ Sbjct: 118 QLQKELDQHSV 128 >gi|317056951|ref|YP_004105418.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7] gi|315449220|gb|ADU22784.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7] Length = 145 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 10/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + + +L + + ++ + ++ + + +L L AGIVET +G Sbjct: 1 MQITSKFTAAVHILTCIDVFDGQMRVTSDFLSGSTGVNAVIVRNVLGQLRTAGIVETRQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113 GG L + D+IT+ D+ KA + + + + DCP+ + + + + Sbjct: 61 -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNADCPVGRN--IHKAMDERLEA 117 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A A + L ++ +V + + Sbjct: 118 AQAALENELKSTTLAQVVSDTRKL 141 >gi|28377198|ref|NP_784090.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254555410|ref|YP_003061827.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300766930|ref|ZP_07076843.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179412|ref|YP_003923540.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270029|emb|CAD62929.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254044337|gb|ACT61130.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300495468|gb|EFK30623.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044903|gb|ADN97446.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 146 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ R I +L Y I+ D IA + S + + +++ L +AG++ T G Sbjct: 1 MRVSTRFSDSIHLLAYIKIYADTKLTSDAIARSIETSPVVVRRLMSKLRQAGLITTTPG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L +P QI++L V A E + DC + G+ L + A A Sbjct: 60 TAQPALAKPLSQISLLSVFYAIEGDKPLLAVDPKTNPDCIVGGNIQTVLKQYYQDAQTAA 119 Query: 119 FDVLTQYSIECLVRN 133 L + S++ +V N Sbjct: 120 EARLAKTSLQDVVDN 134 >gi|291279997|ref|YP_003496832.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754699|dbj|BAI81076.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans SSM1] Length = 140 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 2/138 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T+ DY IR++ Y A ++ +I +I + + F+ KI+ L K I++T G+ G Sbjct: 5 ITREVDYAIRIVAYLAGKDER-IKIDEICKKLYLKRPFVIKIIHKLNKCHILKTYTGKNG 63 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G+ L ++++ D+ + + C C L C +T+ + + L Sbjct: 64 GILLAMDVSELSLYDIFQCLGFKTTINIC-TEKPEHCELNPICNITTFFAGIEKSLVNKL 122 Query: 123 TQYSIECLVRNRSSIKKI 140 I+ + N + K+ Sbjct: 123 KNAKIKDFIFNDEDLNKM 140 >gi|315651167|ref|ZP_07904198.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986] gi|315486565|gb|EFU76916.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986] Length = 130 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +RV+ A+ + ++IA+ + + +K+L L+K+ +V ++RG Sbjct: 1 MLITREMDYAVRVVR--ALKGNTKISATEIAKKEHLPQAITYKVLNSLLKSKLVGSMRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118 GG L T+ D+ A E + EC DC G C L + N+ Sbjct: 59 NGGYYLKCDLTCTTLYDICVALGEDMSITECI-RDGYDCVNNRCGECTLNREFNRIQNSL 117 Query: 119 FDVLTQYSIECLV 131 L +++ L+ Sbjct: 118 NRELQLTTLDKLL 130 >gi|81429434|ref|YP_396435.1| hypothetical protein LSA1822 [Lactobacillus sakei subsp. sakei 23K] gi|78611077|emb|CAI56130.1| Hypothetical protein LCA_1822 [Lactobacillus sakei subsp. sakei 23K] Length = 171 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 7/138 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT+ + +++ A ++ I S+ +L KI++ LV AG+V++V G Sbjct: 1 MQLTRAFEQATCIIVLLATQDPEHTISSEVIHHRLGGSQTYLRKIIRKLVVAGLVKSVSG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV------AECFASHKIDCPLVGSCGLTSVLRK 113 GG L RPA +++I DVV ATE + + G+ + + K Sbjct: 61 NSGGFTLARPASEVSIYDVVLATEGQIKSYPDTGKLDTVFNDFQPVAKQGTLIINAAFHK 120 Query: 114 ALNAFFDVLTQYSIECLV 131 A + + L + ++ L+ Sbjct: 121 ADMLWANELKKQTVSGLI 138 >gi|86134276|ref|ZP_01052858.1| transcriptional regulator [Polaribacter sp. MED152] gi|85821139|gb|EAQ42286.1| transcriptional regulator [Polaribacter sp. MED152] Length = 142 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+K+T YGI+ L Y A P I+ I+++ IS FL IL L K G++ + +G+ Sbjct: 2 LSKKTKYGIKALTYLAKQEHKMPIAIATISKSENISLKFLESILLTLRKNGLLGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + D+I + +++ E + C F DCP +C + ++ + + Sbjct: 62 GGYYLLKKPDEILMTTIMRILEGPISMVPCVSLNFYEKCDDCPDENACAVHKLMIQVRDN 121 Query: 118 FFDVLTQYSIECLVRNRSS 136 + ++ L N S+ Sbjct: 122 TLQIFRNTTLADLTINASN 140 >gi|325687289|gb|EGD29311.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK72] Length = 160 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 71 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S+ +V Sbjct: 128 AIQAAMEAELAQTSLNEVVA 147 >gi|125718392|ref|YP_001035525.1| hypothetical protein SSA_1586 [Streptococcus sanguinis SK36] gi|125498309|gb|ABN44975.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 150 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGRKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137 >gi|315304491|ref|ZP_07874765.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] gi|313627139|gb|EFR95998.1| Rrf2 family protein [Listeria ivanovii FSL F6-596] Length = 156 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58 M L+K D ++ D P I S ++ KIL+ LV +G++ +V Sbjct: 1 MKLSKSMDQVFCIMTMLYTQKADVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112 G GG L + ++I +LD+V+A E + S + G +TS R Sbjct: 61 GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + + L + LV Sbjct: 121 NADKEYANYLYSQKLAVLVEQ 141 >gi|84686207|ref|ZP_01014102.1| hypothetical protein 1099457000256_RB2654_08387 [Maritimibacter alkaliphilus HTCC2654] gi|84665734|gb|EAQ12209.1| hypothetical protein RB2654_08387 [Rhodobacterales bacterium HTCC2654] Length = 144 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ H D P +I + + + + L AGIV +V+G GG L RP Sbjct: 11 LHALLHLERH-DGPATSDEIGRMLNTNATVVRRTMGGLRDAGIVGSVKGHGGGWTLARPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128 DQIT+L + A E A A C L + L L A F L + ++ Sbjct: 70 DQITMLTIYDALGEPSLFALGQAQDAPGCRLEQAANTALGKALDGARRRFRKELERVTVA 129 Query: 129 CL 130 L Sbjct: 130 DL 131 >gi|312863871|ref|ZP_07724109.1| transcriptional regulator [Streptococcus vestibularis F0396] gi|311101407|gb|EFQ59612.1| transcriptional regulator [Streptococcus vestibularis F0396] Length = 149 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R + +L A + N+ +A + ++ + + K L L KA ++ R Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMAGSVGVNPVIIRKTLSQLKKADLISVQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G GG L + ++I +L V +A + S + + CP+ + + +L ++L Sbjct: 61 G-SGGATLVKIPEEINLLQVYRAVDSIGPSGKLFSFHENPNPACPVGRN--IHGILDQSL 117 Query: 116 N----AFFDVLTQYSIECLVRNRSSIKKIFNA 143 A L + ++ ++++ + K A Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKANWKEVGA 149 >gi|169351211|ref|ZP_02868149.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM 1552] gi|169292273|gb|EDS74406.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM 1552] Length = 147 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 8/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + I +L+ A ++ P + I+++ +S+ +L KI++ LV AG++ + G Sbjct: 1 MKLKNSVEQAICLLIMIAHSDEKTPLKSYNISKSLGVSDSYLKKIIRQLVVAGLITSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112 ++GGV L + D+IT+LD+ +A E A F + + + Sbjct: 61 KKGGVSLKKSPDKITLLDIFEAIEGKEPFARATGLVERVFLNELKEVKEQKQAMILEAFN 120 Query: 113 KALNAFFDVLTQYSIE 128 +A ++ + L + +++ Sbjct: 121 QAEKSYKEKLKKITLQ 136 >gi|194467571|ref|ZP_03073558.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri 100-23] gi|194454607|gb|EDX43504.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri 100-23] Length = 151 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 4/146 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ P + IA + S + + +++ L KAG++ TV G Sbjct: 1 MKISTRFSDSIHILAFINIYQGTIPLTSNNIASSIETSPVVVRRLMSALNKAGLINTVHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 L + + I++ D+ A E + C + G+ L ++A A Sbjct: 61 AA-DPALAKSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGNIQETLNGFYQQAETA 119 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143 L + S++ ++ + I +A Sbjct: 120 AKAKLARTSLQDVIDTIRVKQAIKDA 145 >gi|157150627|ref|YP_001450032.1| RRF2 family protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075421|gb|ABV10104.1| RRF2 family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 149 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEIAKDLKDISLLDVYCAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137 >gi|262282684|ref|ZP_06060452.1| RRF2 family protein [Streptococcus sp. 2_1_36FAA] gi|262261975|gb|EEY80673.1| RRF2 family protein [Streptococcus sp. 2_1_36FAA] Length = 149 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKRKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEIAKDLKDISLLDVYCAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137 >gi|258509392|ref|YP_003172143.1| Rrf2 family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149319|emb|CAR88292.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus GG] gi|259650674|dbj|BAI42836.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 146 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 12/147 (8%) Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M + + + Y A H DY I +I+E I + K L K+GI+ Sbjct: 1 MAFSVAFSQALEITAYVNAKSQAQHEDY-LSIQKISEMLNIPVPSIKKNSSTLKKSGILT 59 Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109 + G GG+RL + IT+ +++ A E + + + + G T+ Sbjct: 60 SKTGLNGGLRLAKTPQTITVYEILTAIEGTAPLFKLHQEIDPAAFVNGERVTSWLAASTN 119 Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136 VL +A +A VL Q SI L + Sbjct: 120 VLNQAEDAMVQVLKQTSIADLAEAAEA 146 >gi|46201015|ref|ZP_00207932.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + A + IA + + + + ++L L KAG+V + RG GG L Sbjct: 10 AVHIASLLASMDGKACTSEWIAGSVNTNPVVVRRLLSALAKAGLVHSTRGSAGGSVLALG 69 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127 ++I++LD+ +A +E A DCP+ + L V+ +A A VL+ + Sbjct: 70 PERISLLDIHRAVDEEEEPALHNQPPNPDCPVGRNIQSVLVRVIERADAARDGVLSATLL 129 Query: 128 ECLV 131 +V Sbjct: 130 SDVV 133 >gi|322385029|ref|ZP_08058679.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270939|gb|EFX53849.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 149 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEITKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137 >gi|284036740|ref|YP_003386670.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM 74] gi|283816033|gb|ADB37871.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM 74] Length = 153 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++K + Y IR L Y A+ + N+I ++A + + FL KI+Q LV+ I+ + +G Sbjct: 2 ISKTSGYAIRGLAYLALKSTAVNKIGVHELAAELNVPQPFLGKIMQGLVRRDIISSTKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG I+DVV A + CF +C C L + ++ Sbjct: 62 NGGFFTNERTLTTPIIDVVDAIDGLGMFRRCFLGL-PECNSEKPCPLHQHVIGFRDSLQH 120 Query: 121 VLTQYSIECLVRN 133 L ++ +VR+ Sbjct: 121 SLETLTVHDMVRD 133 >gi|148242252|ref|YP_001227409.1| transcriptional regulator [Synechococcus sp. RCC307] gi|147850562|emb|CAK28056.1| Predicted transcriptional regulator [Synechococcus sp. RCC307] Length = 149 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LT+ +R L+ A ++A+ + E L +IL L +A +VE RGR G Sbjct: 2 LTRAGTIALRALVELARSPHSVISGPELAKRQELPEARLEQILLQLRQAQLVEARRGRSG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RL R AD +++ DV+ A + S + G + ++ A L Sbjct: 62 GYRLSRRADDLSVQDVLDAVGGRRQLNLEIESAEGAIGQAGQRLEQQLQQRLQRAMEREL 121 Query: 123 TQYSIECLVRNRSSIKKIFN 142 +Q ++ L+ ++ S + + Sbjct: 122 SQLTVAELLYDQRSWEASLD 141 >gi|255264484|ref|ZP_05343826.1| transcriptional regulator [Thalassiobium sp. R2A62] gi|255106819|gb|EET49493.1| transcriptional regulator [Thalassiobium sp. R2A62] Length = 143 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L + A D ++IA+ + + + ++L L AG++ + RG GG RL R Sbjct: 10 ALHALSHMAYDTDDAQTSAEIADHAGTNPVVVRRVLGKLRAAGLLTSERGHSGGWRLGRE 69 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127 IT+ DV A E+ V C + + + +L++ + + L Q +I Sbjct: 70 TKHITLADVYAALGENL-VVSGQRIKTDTCAVERALDVRVQQILKEIEQSLVERLGQTTI 128 Query: 128 ECL 130 + Sbjct: 129 ADV 131 >gi|257867558|ref|ZP_05647211.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873887|ref|ZP_05653540.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257801614|gb|EEV30544.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808051|gb|EEV36873.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 141 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 60/136 (44%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y + +IA++ + ++ +I+ L AG++E+ RG+ Sbjct: 1 MKYSTKYSDAIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRIAGLIESQRGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALN 116 +L + +I++LD+ + E+ + +C + G+ + +VL + Sbjct: 61 P-NPKLTKEPYEISLLDIYASVEKDQHLLHADKKTNPNCLIGGN--IQTVLEETYDVLQK 117 Query: 117 AFFDVLTQYSIECLVR 132 ++ S++ ++ Sbjct: 118 KIEQEMSAISLQSIID 133 >gi|15893411|ref|NP_346760.1| hypothetical protein CA_C0115 [Clostridium acetobutylicum ATCC 824] gi|15022941|gb|AAK78100.1|AE007524_5 Uncharacterized protein, Yje/RRF2 family [Clostridium acetobutylicum ATCC 824] gi|325507523|gb|ADZ19159.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 137 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ DY +RV++Y + + + IAE + FL K+L+ L+K+GIV++ RG Sbjct: 1 MRITQEADYSMRVVLYLSKLGYEQKIDAATIAEHEKLPLRFLLKLLRKLIKSGIVKSYRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118 +GG L + I + +V++A + V C + G C + + L + Sbjct: 61 VKGGYALNKYPKDINLREVIEAIDGPICVNRCLTDSSYCNAKRTGICEIHNALSLVRSDL 120 Query: 119 FDVLTQYSIECL 130 L + + E L Sbjct: 121 IKNLEKINFEDL 132 >gi|94311031|ref|YP_584241.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354883|gb|ABF08972.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus metallidurans CH34] Length = 144 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L +AG V T G Sbjct: 1 MSTSSRFAVAVHILTLLA-QAEGPVPSSMIAGSVGTNPALIRRMIGALTEAGFVTTTMGS 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPA QIT+L+V +ATE + + ++ C + L V +A A Sbjct: 60 TGGAMLTRPASQITLLEVFQATETTALITLHQSAPNPACLVGREITGTLQVVADRAQAAM 119 Query: 119 FDVLTQYSIECLV 131 L + +I ++ Sbjct: 120 DATLAEITIASML 132 >gi|184154498|ref|YP_001842838.1| hypothetical protein LAF_0022 [Lactobacillus fermentum IFO 3956] gi|260662559|ref|ZP_05863454.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|183225842|dbj|BAG26358.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] gi|260553250|gb|EEX26193.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 141 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R G+ VL Y +H D +++A + + + +++ L KAG++ T G Sbjct: 1 MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L + ++IT+LDV +A E+ + + DCP+ + LT K A Sbjct: 60 TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKNIQGVLTQEFAKVQAAA 119 Query: 119 FDVLTQYSIECLVRN 133 + + ++ + N Sbjct: 120 EAAMQEITLAEITAN 134 >gi|319955408|ref|YP_004166675.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola DSM 14237] gi|319424068|gb|ADV51177.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola DSM 14237] Length = 143 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YG+R +++ A +D +S I+E + F KILQ L K IV +++G Sbjct: 2 FSKSCEYGLRAVLFIAQQSDKDTKVSMSTISEEINSPQAFTAKILQKLTKTQIVHSLKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + ++V + C K C C L + + + Sbjct: 62 YGGFSILPEKMDTKLSEIVTILDGDSIYKGCALGLK-QCDANSPCPLHFKFVEIRDNLQE 120 Query: 121 VLTQYSIECLVRN 133 +L SI+ +V + Sbjct: 121 MLETTSIKSVVND 133 >gi|229823777|ref|ZP_04449846.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271] gi|229786816|gb|EEP22930.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271] Length = 150 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 1 MHLTKRTDYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ R I ++Y + + ++E+ ++ + + +L L AGI+E+ + Sbjct: 1 MQISSRFTIAIHSLAVIYL-RQDHQRVTSNFLSESIQVNPVVVRSVLSGLKAAGIIESRQ 59 Query: 59 GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LR 112 G GG RL +P D IT D+ + + + + DCP+ + + L Sbjct: 60 G-SGGSRLAKPLDAITFYDIYVTVDSVDKEGLFNFHPNPHQDCPVGRN--IHQAVDGKLI 116 Query: 113 KALNAFFDVLTQYSIECLVRN 133 + A + L + +++ +V + Sbjct: 117 QIQAAMENELKRITMQDVVDD 137 >gi|323489199|ref|ZP_08094431.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus donghaensis MPA1U2] gi|323397086|gb|EGA89900.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus donghaensis MPA1U2] Length = 160 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 14/147 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+ + + ++ + + I++ S + K+L+ LV AG++ +V G Sbjct: 1 MHMKPGVEQSVYAVLLLNMLPEKAVLPGEAISQQLGTSPTYFQKLLRKLVSAGLITSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111 +GG +L + + I + D+ A E + C C LT ++ Sbjct: 61 VKGGFKLNKKPEDINVFDIYVAIEGQQSLYSPSGVLSDLLELEEPERC-----CLLTELM 115 Query: 112 RKALNAFFDVLTQYSIECLVRNRSSIK 138 +A +A+ + Q +IE L R + Sbjct: 116 VEAESAWRSRMEQETIESLSRKMKEQR 142 >gi|187251464|ref|YP_001875946.1| rrf2 family protein [Elusimicrobium minutum Pei191] gi|186971624|gb|ACC98609.1| Rrf2 family protein (putative transcriptional regulator) [Elusimicrobium minutum Pei191] Length = 150 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + +L A++ N + +A++ + + + +IL L KA IV++ G Sbjct: 1 MKTNTRFTTAVHILALLALNKKEANTSALLAKSVNTNPVVVRRILSMLKKANIVDSKPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSC--GLTSVLRKALNA 117 +G V L R I++L++ A + + +C + + L L++A A Sbjct: 61 KG-VTLKRGPLTISLLEIYDAVKSPSDTFFPLHKNPSKECFIGANIHSALYDPLKEASQA 119 Query: 118 FFDVLTQYSIECLVR 132 +L++YS++ + R Sbjct: 120 AEKILSKYSLKDITR 134 >gi|157163963|ref|YP_001466494.1| transcriptional regulator superfamily [Campylobacter concisus 13826] gi|112800651|gb|EAT97995.1| Rrf2 family protein [Campylobacter concisus 13826] Length = 137 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I L+ + IA + + + + ++L L AG+V G Sbjct: 1 MQVGIKFSTAIHALLCAKFFENEKVTSEFIAGSINTNPVIIRRLLGTLKAAGLVNVAAGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GGV L + I +L++ A E + + + CP+ G L+ +A A Sbjct: 61 -GGVSLAKEPKDINLLEIFNAVNEKEKLFKIHSDSPKACPVGGRIEELLSGHFLRAQTAL 119 Query: 119 FDVLTQYSIECLVRN 133 + L +++ L+ Sbjct: 120 ENELKNVTLQDLLDE 134 >gi|322373240|ref|ZP_08047776.1| Rrf2 family protein [Streptococcus sp. C150] gi|321278282|gb|EFX55351.1| Rrf2 family protein [Streptococcus sp. C150] Length = 149 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + R + VL A++ D +A + ++ + + K L L KA ++ R Sbjct: 1 MQIPSRFTIAVHVLTLIALNKDNETKLTSDFMAGSVGVNPVIIRKTLSQLKKADLISVQR 60 Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 G GG L + ++I +L V A + S + CP+ + + +L ++L Sbjct: 61 G-TGGAALVKSPEEINLLQVYHAVDSIGPSGKLFSFHDHPNPACPVGRN--IHGILDQSL 117 Query: 116 N----AFFDVLTQYSIECLVRNRSS 136 A L ++ ++++ + Sbjct: 118 EDVQMAMEKELETKTLAGILKDAKA 142 >gi|239636705|ref|ZP_04677707.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri L37603] gi|239598060|gb|EEQ80555.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri L37603] Length = 158 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 7/149 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++K + GI VL+ A N + ++E +S+ L KIL+ LV A ++ + Sbjct: 1 MKISKHFEQGIYVLLILATQENQGAVKSQTLSEKLEVSDSSLKKILRKLVVANLITSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKAT-EESFFVAECFASHK----IDCPLVGS-CGLTSVLRK 113 + GG +L + + IT+ DV++A E + D + S + L Sbjct: 61 KDGGFQLNQSIEDITLKDVIEAISNGDVIEFEISHLSRRIFFNDQHIKDSEIKVKQQLND 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 A+ AF + L + S+ L+ + K+ + Sbjct: 121 AIQAFNEKLDELSLVELLEDEYFKHKLVD 149 >gi|227514141|ref|ZP_03944190.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227087512|gb|EEI22824.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 143 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R G+ VL Y +H D +++A + + + +++ L KAG++ T G Sbjct: 3 MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L + ++IT+LDV +A E+ + + DCP+ + LT K A Sbjct: 62 TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKNIQGVLTQEFAKVQAAA 121 Query: 119 FDVLTQYSIECLVRN 133 + + ++ + N Sbjct: 122 EAAMQEITLAEITAN 136 >gi|261368478|ref|ZP_05981361.1| Rrf2 family protein [Subdoligranulum variabile DSM 15176] gi|282569467|gb|EFB75002.1| Rrf2 family protein [Subdoligranulum variabile DSM 15176] Length = 146 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L + ++ ++IAE+ + ++ +++ L KAG++ +G Sbjct: 1 MKYSTKLSDALHILAFLSMGASQRITSAKIAESVKTNPAYIRQLMSALKKAGLLTNTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118 + L R +IT+LDV +A E + + DC + + + ++ A Sbjct: 60 QANAELTRNPCEITVLDVYRAIEGTKPLLHWDIDTNPDCGVGIYVQLSIADMYQEIQQAA 119 Query: 119 FDVLTQYSIECLVR 132 + +++ ++ Sbjct: 120 EQKMQVITLQDILD 133 >gi|320095699|ref|ZP_08027354.1| Rrf2 family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977374|gb|EFW09062.1| Rrf2 family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 138 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L+ + + P + IA + + ++ K+ L KAG + + R GG L P Sbjct: 8 AIHALILIS-EAERPINSTAIAASVGTNASYIRKLTTRLAKAGFIASSR-AAGGFTLTVP 65 Query: 70 ADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125 A QI++ D+ A ++ + + + +C + LT V + A LT Sbjct: 66 AQQISLRDIYCAVTDTDRIQLFDIHGNPNDECVVGAHIRPTLTDVFARQQEALERELTTT 125 Query: 126 SIEC 129 ++ Sbjct: 126 TLAD 129 >gi|294782082|ref|ZP_06747408.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] gi|294480723|gb|EFG28498.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA] Length = 141 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNA 117 GG +L + IT+ D V + E C + SC + L + N Sbjct: 61 ANGGYKLNKDPKDITLRDAV------ETIEEEIIIKDRSCVVGQTSCSVIFKALEEVENN 114 Query: 118 FFDVLTQYSIECLVRNRSSIK 138 F + L + + + L +K Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135 >gi|331004367|ref|ZP_08327840.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411097|gb|EGG90516.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon 107 str. F0167] Length = 130 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DY +R++ A+ +++A+ + + +K+L L+K+ ++ ++RG Sbjct: 1 MLITREMDYAVRIIR--ALKEGTKVSATEVAKKEHLPQAITYKVLNSLLKSKLIGSMRGV 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118 GG L T+ D+ A E + EC DC G C L + ++ Sbjct: 59 NGGYYLKCDLSNTTLYDICTALGEDMSITECI-RDGYDCINNRCGECILNKEFGRIQSSL 117 Query: 119 FDVLTQYSIECLV 131 L + +++ L+ Sbjct: 118 NIELQKTTLDKLL 130 >gi|222102654|ref|YP_002539693.1| hypothetical protein Avi_7313 [Agrobacterium vitis S4] gi|221739255|gb|ACM39988.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 172 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L ++++ I +L CA +A+ + ++++ LV+ G + + RG Sbjct: 1 MRLKRQSEIAIGILTVCAKSPSTKYPAQHLAQEVGATRDHAYQVVALLVRNGFLNSDRGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG+RL R A I + DV++ T+ + A L G L ++ A + Sbjct: 61 GGGLRLARDAKDIKLADVLRITQPEL---DGNAEEPEPGTLKGQPLLDGIVAAASSFLVS 117 Query: 121 VLTQYSIECLVRNRSS 136 +L ++++ LV + S Sbjct: 118 LLDRFTVADLVASPDS 133 >gi|32475221|ref|NP_868215.1| a transcriptional regulator [Rhodopirellula baltica SH 1] gi|32445762|emb|CAD78493.1| conserved hypothetical protein-putative a transcriptional regulator [Rhodopirellula baltica SH 1] Length = 124 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 P +AE + +L ++LQ L AG+V + G GG LC P D +TIL Sbjct: 1 MGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGGGYELCVPTDTLTIL 60 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 DVV + +C K L C L + L + A + +I+ LV + + Sbjct: 61 DVVNTVAPVERIRKCPLGLKSHTDL---CPLHTELDRVYAATEEAFRGVTIDDLVNSTNP 117 Query: 137 IKKIFNA 143 I + + Sbjct: 118 ILPLCES 124 >gi|307705360|ref|ZP_07642222.1| transcriptional regulator family protein [Streptococcus mitis SK597] gi|307621147|gb|EFO00222.1| transcriptional regulator family protein [Streptococcus mitis SK597] Length = 145 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALKGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + I++LDV +A E ++ + + +CP+ + VL Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHEVLDQKLE 117 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139 + A L Q S+E +V + S K Sbjct: 118 RIQQAMEAELGQTSLEQVVADAESQMK 144 >gi|88607096|ref|YP_505255.1| rrf2 family protein /cysteine desulfurase [Anaplasma phagocytophilum HZ] gi|88598159|gb|ABD43629.1| rrf2 family protein /cysteine desulfurase [Anaplasma phagocytophilum HZ] Length = 486 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 4/117 (3%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA++ +SE +L +++ L G+V+ RG GG L D+IT+ ++ + + + Sbjct: 2 IADSQSLSEGYLERVISHLKSRGLVKPTRGPGGGYSLGMSPDRITLDMLLDSVGDKVKMV 61 Query: 90 ECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNAG 144 C A C G C + +I + + +++K++ G Sbjct: 62 RCDADGNTGCISSYAGKCNSHDLWESMEKYMMHYFANTTILDV--SNNTLKELGGGG 116 >gi|116328585|ref|YP_798305.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331314|ref|YP_801032.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121329|gb|ABJ79372.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125003|gb|ABJ76274.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 139 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 2/133 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T R I +L ++ ++AE+ + + + KIL L GIV G G Sbjct: 1 MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNRGIVRNQMGPNG 60 Query: 63 GVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 G L + I + ++ A +E F + + K C L+ V KA D Sbjct: 61 GYVLAKTPSAINLKEIYVAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEDE 120 Query: 122 LTQYSIECLVRNR 134 L ++ L+ Sbjct: 121 LGSTNL-DLIARE 132 >gi|315647519|ref|ZP_07900621.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315276958|gb|EFU40299.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 160 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 14/139 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+ + + L+ + D I++ S + K+L+ LV A I+ +V G Sbjct: 1 MHMKTGVEQSVYALVLLNMLPDKAVLPGEAISQQLGASATYFQKLLRKLVTADIITSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111 +GG RL + + I + DV A E + + C C LT+++ Sbjct: 61 IKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLEKEESC-----CLLTNLM 115 Query: 112 RKALNAFFDVLTQYSIECL 130 +A +++ VL + +I L Sbjct: 116 EEAESSWKAVLKRETIASL 134 >gi|83313117|ref|YP_423381.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82947958|dbj|BAE52822.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 121 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 + IA + + + + ++L L KAG+V + RG GG L RPAD+I++LD+ + Sbjct: 2 DGQACTSEWIAGSVNTNPVVVRRLLSALAKAGLVSSTRGSAGGSVLARPADRISLLDIHR 61 Query: 81 ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131 A +E A CP+ + L V+ +A A VL+ + +V Sbjct: 62 AVDEEEEPALHNQPPNPACPVGRNIQSVLVRVMERADAARDAVLSTTKLSEVV 114 >gi|329926661|ref|ZP_08281072.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] gi|328939070|gb|EGG35435.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] Length = 160 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 14/139 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+ + + L+ + D I++ S + K+L+ LV A ++ +V G Sbjct: 1 MHMKTGVEQSVYALVLLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111 +GG RL + + I + DV A E + + C C L+ ++ Sbjct: 61 IKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESC-----CLLSDLM 115 Query: 112 RKALNAFFDVLTQYSIECL 130 +A +++ VL + +I L Sbjct: 116 EEAESSWKAVLKRETIASL 134 >gi|327470615|gb|EGF16071.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK330] Length = 149 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEIVKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137 >gi|313207165|ref|YP_004046342.1| transcriptional regulator, badm/rrf2 family [Riemerella anatipestifer DSM 15868] gi|312446481|gb|ADQ82836.1| transcriptional regulator, BadM/Rrf2 family [Riemerella anatipestifer DSM 15868] gi|315022434|gb|EFT35461.1| rrf2 family protein [Riemerella anatipestifer RA-YM] gi|325335395|gb|ADZ11669.1| transcriptional regulator, BadM/Rrf2 family protein [Riemerella anatipestifer RA-GD] Length = 145 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 7/140 (5%) Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR Y I + +++ +A+ E F KIL L K IV +++G Sbjct: 2 FSKACEYGIRACAYITIESMQNRKVKVADVAKKVGTPEAFTAKILSALTKHNIVNSIKGP 61 Query: 61 RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + A I I D+V A + ++ C C C L N Sbjct: 62 YGGFEIGEQRAKSIKIKDIVIAIDGHSILSSCSLGFS-SCDESNPCPLHFKYVSVRNELC 120 Query: 120 DVLTQYSIECL---VRNRSS 136 +L ++ + V+N+ S Sbjct: 121 KMLDTTTLFEMAIDVKNKKS 140 >gi|89096273|ref|ZP_01169166.1| rrf2 family protein [Bacillus sp. NRRL B-14911] gi|89089127|gb|EAR68235.1| rrf2 family protein [Bacillus sp. NRRL B-14911] Length = 138 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + I+++ + + + K+L L + G +++ G GG R Sbjct: 8 AIHSLAYLALQLDRMSTSEAISKSAGVHPVRIRKVLSLLKRNGFIKSKEGTGGGFIFARE 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 D++++ D+ K T E + +C S++ C + + L S+ A + L Y+ Sbjct: 68 LDEVSLWDIYKITSEGALQP-KCPESNE-QCIVGANMRNVLFSIFIGAEEHLGEYLKDYT 125 Query: 127 IECLVR 132 I+ +V Sbjct: 126 IKDIVE 131 >gi|229020328|ref|ZP_04177094.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] gi|229026559|ref|ZP_04182908.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228734736|gb|EEL85381.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272] gi|228740964|gb|EEL91196.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273] Length = 157 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 Y + +L +++ +S +L K+++ LV+AG+V +V G +GG RL Sbjct: 10 YALLLLNRL--PKQTMLSGESLSQQLHVSPTYLQKLMRKLVRAGLVSSVPGVKGGFRLQA 67 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAFFDVLTQYS 126 ++I I DV A E + L +C L+ V+ +A A+ +L + + Sbjct: 68 VPEKIRIYDVYIAVEGLESLYRSNGIFHTMFQLKENTTCLLSDVMEEAEYAWKSILKRTT 127 Query: 127 IECL 130 I L Sbjct: 128 IASL 131 >gi|302532311|ref|ZP_07284653.1| rrf2 family protein [Streptomyces sp. C] gi|302441206|gb|EFL13022.1| rrf2 family protein [Streptomyces sp. C] Length = 144 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M + R L + A QIA + + + + + L L AG+VE+ Sbjct: 1 MSASSRMTVATHTLTWMARVCPRRPGGIVTSEQIAASVNTNPVVIRRTLGSLRDAGLVES 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114 RG+ G RL R + IT+ DV A E + + CP+ L V +A Sbjct: 61 RRGQGAGWRLARTPESITLRDVHLAVEPEPLIPLHSSPPNRKCPVAQGIPAVLREVYDRA 120 Query: 115 LNAFFDVL 122 A L Sbjct: 121 EEAMKAEL 128 >gi|313122793|ref|YP_004033052.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279356|gb|ADQ60075.1| Predicted transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 148 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 6/147 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK T I +L+ A +A + + ++ K++ L I+ + RG+ Sbjct: 1 MRDTKYT-VAIHILVMLATSP-RDLNSDDLAASVGTNASYIRKVMALLKDHEIIASQRGK 58 Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117 G RL + + +++L++ +A + + + CP+ + + L +A Sbjct: 59 SG-TRLLKRPEDLSLLEIYQAVNGDDVEIFQIHQNPNPTCPVGKNIKEAVFPFLDEAERQ 117 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144 + L + S+ ++ + +AG Sbjct: 118 LKETLAKDSLADVIDRLKQAAEETDAG 144 >gi|331265868|ref|YP_004325498.1| transcriptional regulator, putative [Streptococcus oralis Uo5] gi|326682540|emb|CBZ00157.1| transcriptional regulator, putative [Streptococcus oralis Uo5] Length = 143 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + D +AE+ + ++ K++ L AG++ + +G+ G Sbjct: 3 TKFSVALHILTMISESKDT-LSSQALAESVGTNASYIRKVIALLKNAGLITSHQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + ++T+L++ AT+E + + DCP+ ++ + + + Sbjct: 61 QLSKSPKKMTLLEIYYATQEIKHISLFPVHQNSNPDCPVGKHIQGAVSPLFASSESQLEK 120 Query: 121 VLTQYSIECLVRN 133 L ++E ++ N Sbjct: 121 KLANQTLEDVIDN 133 >gi|329939769|ref|ZP_08289070.1| Rrf2 family transcriptional regulator, group III [Streptomyces griseoaurantiacus M045] gi|329301339|gb|EGG45234.1| Rrf2 family transcriptional regulator, group III [Streptomyces griseoaurantiacus M045] Length = 136 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L A ++IAE+ + + + ++L L A +V + GR GG L R Sbjct: 1 MHALAMLANRRGGSLTSAEIAESLDSNPVLVRRVLGRLRDARLVWSTEGRGGGWSLARAP 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128 IT+ D A E+ + C + + G L + R A A + L +I Sbjct: 61 RDITLYDAYAAVEDGQVFSRHAHPPNGTCAIGRNIGDLLDAEFRSAERALEEQLRGTTIA 120 Query: 129 CLVRNRSSIKKIFNA 143 L ++++ +A Sbjct: 121 GL------LRQVLDA 129 >gi|255004297|ref|ZP_05279098.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma marginale str. Virginia] Length = 506 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 P R S IA+ +SE +L +++ L G+V++ RG GG L P + IT+ ++ + Sbjct: 15 QPKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSV 74 Query: 83 EESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + + C + P G C ++ L SI + N Sbjct: 75 GDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGIERYVMHYLKNTSILDVFNNN 127 >gi|326334008|ref|ZP_08200237.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] gi|325948157|gb|EGD40268.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1] Length = 153 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 11/138 (7%) Query: 4 TKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 R + VL Y A P ++A + ++ + + K+L PL AG+V + G Sbjct: 6 NTRFAVAVHVLTYLASCAAAGRTTPVSSDELAASTAVNPVHVRKVLGPLRTAGLVRSRPG 65 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKAL 115 GG L + + V + + V CP+ S + VL R+ Sbjct: 66 AHGGWELAADPGVVNLAQVWQLLQGDDPVLGIHG-PNPACPVGAS--IQGVLTDLDRRVA 122 Query: 116 NAFFDVLTQYSIECLVRN 133 A L ++ ++ + Sbjct: 123 KAVLAELEGITLNDVLDD 140 >gi|149196442|ref|ZP_01873497.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155] gi|149140703|gb|EDM29101.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155] Length = 147 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 61/140 (43%), Gaps = 2/140 (1%) Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L K+ +Y I L + ++ + + +I E + +Q + AGI+++++G Sbjct: 3 KLNKKVEYAIIALQHMKNVNEGEMSTVKEICELYGAPFDVTSRAMQKMASAGILKSIKGA 62 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + ++ +LD++++ +A C C ++ +C + + + Sbjct: 63 HGGYLIQENLGELKLLDLIESISGDISLANCVID-ACKCDMISTCNIVDPITRLNELLRK 121 Query: 121 VLTQYSIECLVRNRSSIKKI 140 + ++ L++ R S ++ Sbjct: 122 FFAEMTVLDLLQGRESQPQM 141 >gi|167745831|ref|ZP_02417958.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662] gi|317470556|ref|ZP_07929944.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|167654695|gb|EDR98824.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662] gi|316902071|gb|EFV23997.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 137 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +++ TDY +R+L A+ + I +I + F ++I++ L AG + RG Sbjct: 1 MLISRETDYALRILR--ALSDGKKRSIEEICSLEATPKQFAYRIIKKLETAGWIIITRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116 GG RL I++ +++ F + CF +C C + L + Sbjct: 59 EGGCRLTADLHDISLFQLMQGLGSGFGINACF-EEGYECTRTPLCDEPCHIKEGLLQLEA 117 Query: 117 AFFDVLTQYSIECLV 131 A L + S+ L+ Sbjct: 118 AIEKELKEASLYSLI 132 >gi|325571307|ref|ZP_08146807.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325155783|gb|EGC67979.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 156 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 61/133 (45%), Gaps = 8/133 (6%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D I +L Y + +IA++ + ++ +I+ L AG++E+ RG+ Sbjct: 20 TKYSD-AIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRVAGLIESQRGKP-N 77 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFF 119 +L + ++I++LD+ + E+ + +C + G+ + VL + Sbjct: 78 PKLTKEPNEISLLDIYASVEKDHHLLHADKKTNPNCLIGGN--IQGVLEETYDVLQKKIE 135 Query: 120 DVLTQYSIECLVR 132 ++ S++ ++ Sbjct: 136 QEMSAISLQSIIE 148 >gi|313676812|ref|YP_004054808.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa DSM 4126] gi|312943510|gb|ADR22700.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa DSM 4126] Length = 144 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 4/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR ++Y A + +I IAE F KIL LVK IV ++ G Sbjct: 2 FSKSCEYGIRAVIYIATQSKKTDRVKIGDIAEKINSPVAFTAKILGLLVKNKIVSSITGP 61 Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + + D++ + D+V+ + + C +C C + K Sbjct: 62 KGGFYIEQNRLDKVFLKDIVEVIDGNKIYKGC-GLGLNECSASQPCPVHHKFAKVRAEID 120 Query: 120 DVLTQYSIECLVR 132 +L+ +++ L Sbjct: 121 YMLSTTTLKELTE 133 >gi|322391381|ref|ZP_08064851.1| Rrf2 family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145807|gb|EFX41198.1| Rrf2 family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 145 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQISSRFTIATHMLVIIALEGKENKVTSDFLASSVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + + I++LD+ +A E ++ + + +CP+ + + VL + Sbjct: 61 -TGGAEIIKNLEDISLLDIYQAVECLGKTGQLFSFHDNPNPNCPVGAN--IHVVLDEKLL 117 Query: 114 -ALNAFFDVLTQYSIECLVRNRSS 136 A L+ S+ LV + + Sbjct: 118 KIQQAMEKELSLTSLAQLVTDTEA 141 >gi|228475630|ref|ZP_04060348.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis SK119] gi|228270412|gb|EEK11847.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis SK119] Length = 160 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 6/146 (4%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + I VL+ + + +++ +S+ +L KI++ LVK +V + G Sbjct: 1 MKLSTGWEQAIYVLLILNQLPRQSVMTSTALSKRLKVSDSYLKKIVKALVKENLVYSTTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114 + GG L + IT DV A E + + + C ++ L Sbjct: 61 KNGGFTLRKKLKDITFYDVFLAIEGRGNIFSSQHLLTNFLGEKEGHKAQQCNISIALNHI 120 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140 + L+ +++ + ++ + + Sbjct: 121 EHTLISTLSNINLDDIYQDIIKLYNL 146 >gi|332637437|ref|ZP_08416300.1| transcriptional regulator [Weissella cibaria KACC 11862] Length = 162 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K + +++ A + D + +++ +S +L KI + L AG++ + Sbjct: 1 MKLSKAFFQTVGIVVMLAQLPEDETLKSQEMSARMQVSHSYLLKIAKKLKDAGVITSSAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-------KIDCPLVGSCGLTSVLR 112 + GG L + ++I+ LD+ A E E F S L +L Sbjct: 61 KNGGYSLAKKPEEISFLDLFDAVESGEAFHENFDVEIAQGIFITPTLIEEKSNRLIDLLN 120 Query: 113 KALNAFFDVLTQYSIECLV 131 +A A+ + L + + ++ Sbjct: 121 EAEQAYRERLANHKLSDIL 139 >gi|328958167|ref|YP_004375553.1| putative transcriptional regulator [Carnobacterium sp. 17-4] gi|328674491|gb|AEB30537.1| putative transcriptional regulator [Carnobacterium sp. 17-4] Length = 156 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58 M LTK + I +L + ++Y P + + S ++ KI++ LV +G+ ++ Sbjct: 1 MKLTKGLEQAICILAMLSTQDNYIPITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF-------FVAECFASHKIDCPLVGSCGLTSVL 111 G GG L + ++I +L++V+A E + + F+ L + Sbjct: 61 GSNGGFILAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSDVGEPASNGEK-TLVTTF 119 Query: 112 RKALNAFFDVLTQYSIECLV 131 +A + + L + +++ L+ Sbjct: 120 EEADKQYTNFLKRQTLDQLI 139 >gi|284802803|ref|YP_003414668.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578] gi|284995945|ref|YP_003417713.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923] gi|315283437|ref|ZP_07871629.1| Rrf2 family protein [Listeria marthii FSL S4-120] gi|284058365|gb|ADB69306.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578] gi|284061412|gb|ADB72351.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923] gi|313612915|gb|EFR86865.1| Rrf2 family protein [Listeria marthii FSL S4-120] Length = 157 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58 M L+K D ++ D P I S ++ KIL+ LV +G++ +V Sbjct: 2 MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 61 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112 G GG L + ++I +LD+V+A E + S + G +TS R Sbjct: 62 GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 121 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + + L + LV Sbjct: 122 NADKEYANYLYSQKLSVLVEQ 142 >gi|16801523|ref|NP_471791.1| hypothetical protein lin2461 [Listeria innocua Clip11262] gi|16804399|ref|NP_465884.1| hypothetical protein lmo2361 [Listeria monocytogenes EGD-e] gi|46908531|ref|YP_014920.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092459|ref|ZP_00230249.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|47097339|ref|ZP_00234894.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|217963540|ref|YP_002349218.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|224499040|ref|ZP_03667389.1| Rrf2 family protein [Listeria monocytogenes Finland 1988] gi|224503509|ref|ZP_03671816.1| Rrf2 family protein [Listeria monocytogenes FSL R2-561] gi|226224912|ref|YP_002759019.1| hypothetical protein Lm4b_02331 [Listeria monocytogenes Clip81459] gi|254825058|ref|ZP_05230059.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|254826814|ref|ZP_05231501.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|254831214|ref|ZP_05235869.1| hypothetical protein Lmon1_07647 [Listeria monocytogenes 10403S] gi|254854313|ref|ZP_05243661.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|254901113|ref|ZP_05261037.1| hypothetical protein LmonJ_14903 [Listeria monocytogenes J0161] gi|254914037|ref|ZP_05264049.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254933311|ref|ZP_05266670.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|254938352|ref|ZP_05270049.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|254992735|ref|ZP_05274925.1| hypothetical protein LmonocytoFSL_06501 [Listeria monocytogenes FSL J2-064] gi|255017809|ref|ZP_05289935.1| hypothetical protein LmonF_08865 [Listeria monocytogenes FSL F2-515] gi|255027001|ref|ZP_05298987.1| hypothetical protein LmonocytFSL_12903 [Listeria monocytogenes FSL J2-003] gi|255521538|ref|ZP_05388775.1| hypothetical protein LmonocFSL_10010 [Listeria monocytogenes FSL J1-175] gi|290893648|ref|ZP_06556630.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|300763892|ref|ZP_07073888.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] gi|16411849|emb|CAD00439.1| lmo2361 [Listeria monocytogenes EGD-e] gi|16414983|emb|CAC97688.1| lin2461 [Listeria innocua Clip11262] gi|46881803|gb|AAT05097.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47014290|gb|EAL05268.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|47019236|gb|EAL09979.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858] gi|217332810|gb|ACK38604.1| Rrf2 family protein [Listeria monocytogenes HCC23] gi|225877374|emb|CAS06088.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599191|gb|EEW12516.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165] gi|258607706|gb|EEW20314.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503] gi|258610965|gb|EEW23573.1| Rrf2 family protein [Listeria monocytogenes F6900] gi|290556850|gb|EFD90382.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071] gi|293584871|gb|EFF96903.1| Rrf2 family protein [Listeria monocytogenes HPB2262] gi|293592056|gb|EFG00391.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594300|gb|EFG02061.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194] gi|300515233|gb|EFK42284.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017] gi|307571883|emb|CAR85062.1| HTH rrf2-type DNA-binding domain protein [Listeria monocytogenes L99] gi|313607154|gb|EFR83645.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208] gi|313617478|gb|EFR89842.1| Rrf2 family protein [Listeria innocua FSL S4-378] gi|313622624|gb|EFR93003.1| Rrf2 family protein [Listeria innocua FSL J1-023] gi|328465394|gb|EGF36641.1| hypothetical protein LM1816_13597 [Listeria monocytogenes 1816] gi|328471579|gb|EGF42459.1| hypothetical protein LM220_03882 [Listeria monocytogenes 220] Length = 156 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58 M L+K D ++ D P I S ++ KIL+ LV +G++ +V Sbjct: 1 MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112 G GG L + ++I +LD+V+A E + S + G +TS R Sbjct: 61 GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + + L + LV Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141 >gi|254509346|ref|ZP_05121435.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus 16] gi|219547742|gb|EED24778.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus 16] Length = 115 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 +V +VRG GG RL A I+I V+ A +ES +C + K DC C ++ R Sbjct: 1 MVASVRGPGGGYRLGEDAQSISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWR 58 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIK 138 + D L ++ L+ + ++ Sbjct: 59 DLSSRISDFLNNITLGELMHDNEVLE 84 >gi|56460707|ref|YP_155988.1| rf2 family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56179717|gb|AAV82439.1| Predicted transcriptional regulator, rrf2 family [Idiomarina loihiensis L2TR] Length = 138 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 7/131 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + +L++ +P I++ + + + +++ L + G V +V+G Sbjct: 6 QLSR----ALHILIHLGQKP-HPVTSETISKMLKTNPVVVRRMMGRLRENGYVTSVKGHN 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119 GG L R +IT+LD+ KA + F C + + L ++ A Sbjct: 61 GGWSLSRSLREITLLDIHKALGDKNLFTIGFTEPDSKCLIEKAVNTQLEQTMKDAEAVLL 120 Query: 120 DVLTQYSIECL 130 D + ++ L Sbjct: 121 DKFAKVTLNDL 131 >gi|332830471|gb|EGK03099.1| hypothetical protein HMPREF9455_01349 [Dysgonomonas gadei ATCC BAA-286] Length = 136 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 ++ + +L+ A D +A + I+ + + K L L + GIV + G+ GG Sbjct: 4 RKFSISMHILVLLATSLDEWISSDYLAGSMNINPVLVRKELSNLRRHGIVVSKEGKNGGS 63 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122 L +PAD+I + D+ + + AS CP+ L + +A + L Sbjct: 64 MLAKPADKILLSDIYRIVSSQTALGNSLASPNPKCPVGKQINEHLHDLNMEAEDFIIAKL 123 Query: 123 TQYSIEC 129 + ++ Sbjct: 124 SDQTLAD 130 >gi|220904116|ref|YP_002479428.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868415|gb|ACL48750.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 181 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P S++A ISE F+ KI++ L GI+++VRG GG L R + IT+ D++ A E Sbjct: 25 PASASELAACTGISEKFVQKIMRLLQAEGIIKSVRGIAGGHMLARNPEAITLADIICAVE 84 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 + + P + V KA A + L ++ VR + + + Sbjct: 85 GGITL----PGVNSEAPAGKAAL--DVWDKAATALRNSLDAVTLCS-VRQNAGLSQ 133 >gi|307710681|ref|ZP_07647110.1| transcriptional regulator family protein [Streptococcus mitis SK321] gi|307617452|gb|EFN96623.1| transcriptional regulator family protein [Streptococcus mitis SK321] Length = 143 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +A + + ++ K++ L AG++ + +G+ G Sbjct: 3 TKFSVALHILTMISESKET-LSSQALAISVGTNASYIRKVIALLKNAGLITSHQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + ++T+L++ AT+E + + DCP+ ++ + A + Sbjct: 61 QLSKSPKKMTLLEIYYATQEINHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120 Query: 121 VLTQYSIECLVRN 133 L ++E ++ N Sbjct: 121 ELANQTLEDVIDN 133 >gi|60594413|pdb|1YLF|A Chain A, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus Cereus, A Member Of The Rrf2 Family Of Putative Transcription Regulators. gi|60594414|pdb|1YLF|B Chain B, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus Cereus, A Member Of The Rrf2 Family Of Putative Transcription Regulators. gi|60594415|pdb|1YLF|C Chain C, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus Cereus, A Member Of The Rrf2 Family Of Putative Transcription Regulators Length = 149 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R + +L + AE+ + + + KI L +AG V RG Sbjct: 8 KISSRFSIAVHILSILKNNPSSLCTSDYXAESVNTNPVVIRKIXSYLKQAGFVYVNRGP- 66 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L + +IT+LDV A E + DCP+ + L +L +A +A Sbjct: 67 GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQSA 126 Query: 118 FFDVLTQYSIECL 130 +VL + L Sbjct: 127 XEEVLRNITXGQL 139 >gi|332975394|gb|EGK12288.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437] Length = 86 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 +V++VRG GG +L R ++IT DV++ E E G + R Sbjct: 1 MVKSVRGAYGGYKLSRSPEEITAGDVIRVLEGPISPVEFNEEEDP--------GRRELWR 52 Query: 113 KALNAFFDVLTQYSIECL 130 + +A +VL ++ L Sbjct: 53 RIRDAIAEVLDNTTLADL 70 >gi|261406785|ref|YP_003243026.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283248|gb|ACX65219.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 160 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH+ + + L+ + D I++ S + K+L+ LV A ++ +V G Sbjct: 1 MHMKTGVEQSVYALVLLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITSVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111 +GG RL + + I + DV A E + + C C L+ ++ Sbjct: 61 IKGGFRLRKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESC-----CLLSDLM 115 Query: 112 RKALNAFFDVLTQYSIECL 130 +A ++ VL + +I L Sbjct: 116 EEAETSWKAVLKRETIASL 134 >gi|327490256|gb|EGF22044.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 149 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ S I A + ++ + + K L L AG++ RG Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113 GG + + I++LDV A E +S + DCP+ + + +VL Sbjct: 61 -TGGAEIAKDLKGISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117 Query: 114 -ALNAFFDVLTQYSIECLVR 132 A L Q S++ +V Sbjct: 118 AIQAAMESELAQTSLDEVVA 137 >gi|289435629|ref|YP_003465501.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171873|emb|CBH28419.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632170|gb|EFR99244.1| Rrf2 family protein [Listeria seeligeri FSL N1-067] gi|313636561|gb|EFS02277.1| Rrf2 family protein [Listeria seeligeri FSL S4-171] Length = 156 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58 M L+K D ++ D P I S ++ KIL+ LV +G++ +V Sbjct: 1 MKLSKSMDQVFCIMTMLYTQKADVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112 G GG L + ++I +LD+V+A E + S + G +TS R Sbjct: 61 GNNGGFTLAKNPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + + L + LV Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141 >gi|257877644|ref|ZP_05657297.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257811810|gb|EEV40630.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 156 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 62/133 (46%), Gaps = 8/133 (6%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK +D I +L Y + +IA++ + ++ +I+ L AG++E+ RG+ Sbjct: 20 TKYSD-AIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRIAGLIESQRGKP-N 77 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFF 119 +L + ++I++LD+ + E+ + +C + G+ + +VL + Sbjct: 78 PKLTKEPNEISLLDIYASVEKDQHLLHADKKTNPNCLIGGN--IQTVLEETYDVLQKKIE 135 Query: 120 DVLTQYSIECLVR 132 ++ S++ ++ Sbjct: 136 QEMSAISLQSIID 148 >gi|306825709|ref|ZP_07459048.1| Rrf2 family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432070|gb|EFM35047.1| Rrf2 family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 145 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ AI + +A + ++ + + K L L KAG++ RG Sbjct: 1 MQISSRFTIATHMLIIIAIKGRESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + I++ DV +A E +S + + +CP+ + + VL Sbjct: 61 -TGGTEIIKDLQDISLFDVYQAVECLGKSGKLFSFHDNPNPNCPVGAN--IHKVLDQKLL 117 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 A + L Q S+ +V + + Sbjct: 118 DIQVAMENQLRQMSLAQVVADAEA 141 >gi|313672780|ref|YP_004050891.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio nitroreducens DSM 19672] gi|312939536|gb|ADR18728.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio nitroreducens DSM 19672] Length = 144 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 3/141 (2%) Query: 1 MHLTKR-TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L K+ DY IR++ Y + D ++ +I+E IS+ KIL L K GI++T G Sbjct: 1 MSLVKKEVDYAIRIIAYL-LGKDNLVKMEEISEKLFISQPNTIKILHKLSKCGIIKTKTG 59 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + GG+ L + ++I D++ + C + C L C +T + Sbjct: 60 KNGGIILKKEVIDLSIYDILTCMGFEAEINVCV-NIPESCKLNPICSITHFFAEIQYDVI 118 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + L I+ + + ++ KI Sbjct: 119 ERLKNAKIKDFIFDDKALSKI 139 >gi|114328438|ref|YP_745595.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] gi|114316612|gb|ABI62672.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] Length = 143 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A H + P +A + + + + + L AG V + +G Sbjct: 6 RLSRM----LHVLLHMARH-EGPMTSEALARMLGTNPVVVRRTMAGLRDAGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119 GG + +P +++LDV +A A + DC + + L VLR A Sbjct: 61 GGWVIAQPLKNVSLLDVHRAVGGPRLFAIGHENANADCAVEKAVNTALEGVLRDAEALLV 120 Query: 120 DVLTQYSIECLVRN 133 L S+ L R+ Sbjct: 121 ARLDSVSLAELARD 134 >gi|228472954|ref|ZP_04057711.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624] gi|228275536|gb|EEK14313.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624] Length = 143 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AI++ D + +I+E I FL K+LQ L K + + +G Sbjct: 2 LSNSSKYAINAVLYLAINSSVDRKKGVKEISEVLHIPTAFLAKLLQILAKKKAICSAKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG + + + D+V+ + + C + C C + ++ + F Sbjct: 62 GGGFYITPENLKAPLADIVRYIDGGDKFSICLLGIR-SCSEETPCPMHYAVKPFRDEFLQ 120 Query: 121 VLTQYSIE 128 L +++IE Sbjct: 121 ELERHNIE 128 >gi|42522704|ref|NP_968084.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39573900|emb|CAE79077.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100] Length = 137 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +R + ++ A H ++ + + + +++ LV AG++ + +G+ GGV Sbjct: 4 QRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKAGGV 63 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF----FD 120 +L + +I++ DV A + +A +C + SC + ++ + ++ D Sbjct: 64 KLAKAPKEISLRDVYVAITDKKLIATPDKEPFKNCVV--SCSMKKLMCELVDGIENNSMD 121 Query: 121 VLTQYSIECL 130 L + L Sbjct: 122 YLGGIRLSDL 131 >gi|301166453|emb|CBW26029.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 139 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M RT I +++ ++ D P ++ + + + + +IL L KA IV++ +G Sbjct: 1 MKKNSRTSVAIHSVLHLSMM-DRPVTSEELGQCQNTNPVMIRRILGDLKKAEIVDSEKGH 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTS-VLRKALNAF 118 GG L + IT D+ A +S + +C ++ C L +A Sbjct: 60 GGGWILLKSPKAITFQDIFMALNDSLLPSPIELDEGENCLIMKEICSTMDEFLDEAEILL 119 Query: 119 FDVLTQYSIECLVRN 133 L++ +I+ L+ Sbjct: 120 AKKLSKITIQSLINQ 134 >gi|83645081|ref|YP_433516.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83633124|gb|ABC29091.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 135 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A +D P QIAE + + + + + L G V++ +G GG L +P Sbjct: 11 LHVLIHLAA-SDKPMTSGQIAEMLSTNPVVVRRTMGMLRVQGYVDSAKGHSGGWTLIKPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128 ++IT+LDV A +C + + L + + A + ++ Sbjct: 70 NEITLLDVHNALGGPTLFTLGLTDEHSNCFIERAINEALKTAMDDAEKKLLSRFGEITL- 128 Query: 129 CLVRNRS 135 ++ RS Sbjct: 129 DILAKRS 135 >gi|304407124|ref|ZP_07388778.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304344111|gb|EFM09951.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 139 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ R I +L + ++ + IA + + + + +I+ L KAG++E+ G G Sbjct: 2 ISSRFTVAIHILALIEM-SEGSITSAYIAGSVNTNPVVIRRIMSLLSKAGLIESRPGVTG 60 Query: 63 GVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 ++L RP + IT LDV +A E E+ + + C + + L L +A Sbjct: 61 -MKLVRPLESITFLDVYRAVEVPENDVLFAIHQNSNPQCVVGRNVQNALEEPLLEAQRQM 119 Query: 119 FDVLTQYSIECLVRNRSSIK 138 L ++ +VR S + Sbjct: 120 ELSLANTTVAQVVRQMESKQ 139 >gi|307709675|ref|ZP_07646127.1| transcriptional regulator family protein [Streptococcus mitis SK564] gi|307619573|gb|EFN98697.1| transcriptional regulator family protein [Streptococcus mitis SK564] Length = 136 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +A + + ++ K++ L A ++ + +G+ G Sbjct: 3 TKFSVALHILTMISESKET-LSSQALAISVGTNASYIRKVIALLKNADLIHSQQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + +IT+L++ AT+E + + DCP+ ++ + A + Sbjct: 61 QLSKSPKKITLLEIYYATQEIKHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120 Query: 121 VLTQYSIECLVRN 133 L ++E ++ N Sbjct: 121 ELANQTLEDVIDN 133 >gi|229084913|ref|ZP_04217166.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44] gi|228698386|gb|EEL51118.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44] Length = 146 Score = 90.0 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ R + +L + +AE+ + + + KI+ L +A V RG Sbjct: 5 KISSRFSIAVHILSILKNNPSSICTSEFMAESVNTNPVVIRKIMFYLKQAKFVYVNRGP- 63 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG L + ++IT+LDV A E + DCP+ + L +L +A +A Sbjct: 64 GGAGLLKGLNEITLLDVYHAVNVVEEDKLFYIHEQPNPDCPIGANIQAVLEVILVQAQSA 123 Query: 118 FFDVLTQYSIECL 130 +VL ++E L Sbjct: 124 MEEVLKNITMEHL 136 >gi|170743141|ref|YP_001771796.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197415|gb|ACA19362.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp. 4-46] Length = 162 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 13 VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ A+H +A + L +LQ LV+ G+++ +RG GG L R Sbjct: 30 AVIDIALHARPQAVSARALAARHGLPPRHLETVLQALVRHGLLKGLRGPHGGYELARERR 89 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 +I + D+ +A + + P + + +L A AF L ++E L Sbjct: 90 RIRVGDIARAV---LAL----GDGEAGRPAPAAGLIDPLLAAAGQAFLATLDAVTVEELC 142 Query: 132 RNRSSIK 138 R + + Sbjct: 143 RRAEAAR 149 >gi|300902070|ref|ZP_07120084.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|301307042|ref|ZP_07213079.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|300405815|gb|EFJ89353.1| Rrf2 family protein [Escherichia coli MS 84-1] gi|300837728|gb|EFK65488.1| Rrf2 family protein [Escherichia coli MS 124-1] gi|315252301|gb|EFU32269.1| Rrf2 family protein [Escherichia coli MS 85-1] Length = 148 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 TK +YGIR ++ A+++ + +IA++ E F KILQ L K I+ +V+G Sbjct: 2 FTKACEYGIRACIFVALNSMEKRRVSLKEIAQSIDSPEYFTAKILQKLAKGKIIYSVQGA 61 Query: 61 RGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + I+I D+V + C K C V C + + Sbjct: 62 QGGFEMEEAKIRTISIEDIVLVIDGEVAFTMCVLGLK-KCSEVNPCPVHHKYKNIKADLK 120 Query: 120 DVLTQYSIECLVRN 133 +++ ++ +V Sbjct: 121 EMIKTTTVFDMVDQ 134 >gi|153811519|ref|ZP_01964187.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174] gi|149832260|gb|EDM87345.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174] Length = 136 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I + I +D +A + + + + KILQ L AG++E RG GGV + RP Sbjct: 2 AIHMFACIDIFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG-TGGVTITRP 60 Query: 70 ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLT 123 +QIT LDV KA E + + CP+ + + VL + A + L+ Sbjct: 61 LEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEVQKAMEEKLS 118 Query: 124 QYSIECLVRN 133 + ++ + ++ Sbjct: 119 EMTLADVKKD 128 >gi|149178219|ref|ZP_01856813.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797] gi|148843001|gb|EDL57370.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797] Length = 149 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ Y +R + A Q+++A + +L KI+ L + G++ + RG+ G Sbjct: 10 ISQTEAYALRAMTCLAFRFPDYMTRDQLSQAAEVPHAYLPKIMLELNRTGLIRSQRGQNG 69 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G L +I++LDV+K+ + F + H+ D L L + L Sbjct: 70 GYALIPSPQEISLLDVIKSVKAGFQ--RELSQHRPDTSNE-VRQLDEHLNHTFSLLETSL 126 Query: 123 TQYSIECL 130 Q S+ + Sbjct: 127 EQTSLADI 134 >gi|312131867|ref|YP_003999207.1| transcriptional regulator, badm/rrf2 family [Leadbetterella byssophila DSM 17132] gi|311908413|gb|ADQ18854.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella byssophila DSM 17132] Length = 136 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 2/125 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL A + + IA + CI+ + + + L L +AG++ + +G+ GG +L + Sbjct: 9 ALHVLTLLAKNQEDWVSSDYIAGSICINPVMVRRELSSLNEAGLIYSRKGKDGGSKLSKK 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127 ++I++ +V A + S + + +CP+ L + +A + L + S+ Sbjct: 69 PEEISLGEVYLAVKNSEILGKKNKDTNSNCPVGSRINQKLEELSHEADSLLRQYLDKKSL 128 Query: 128 ECLVR 132 + Sbjct: 129 AEFAK 133 >gi|15612869|ref|NP_241172.1| hypothetical protein BH0306 [Bacillus halodurans C-125] gi|10172919|dbj|BAB04025.1| BH0306 [Bacillus halodurans C-125] Length = 143 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 8/140 (5%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L + A + IA + + + + I+ L KA ++ G Sbjct: 1 MKQISSRFSIAVHILTFIASVREG-CTGDFIAGSVNSNPVIVRNIMGMLKKADLIGVRPG 59 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115 G L + AD+IT+LDV +A + + F + KI+C + L L++A Sbjct: 60 VGGAY-LKKDADEITLLDVYRAVDVIGDDQLFG-FHNPKIECEVGRIIENTLREELKQAQ 117 Query: 116 NAFFDVLTQYSIECLVRNRS 135 A L +I+ L+ Sbjct: 118 EAMEQRLQLVTIQQLLDQPE 137 >gi|254489600|ref|ZP_05102802.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214041770|gb|EEB82411.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 149 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 4/130 (3%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T+ +D + VL++ D P ++A++ + + + L AG V++ RG GG Sbjct: 5 TRLSDV-LHVLLHL-NQVDEPVTSDRLAKSMGTNPAVFRRTMAGLRNAGYVQSGRGHGGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDV 121 L RP +IT+LD+ A + A S+ DC + L + ++ F + Sbjct: 63 WSLVRPLSEITLLDIYTALGQPALFAIGMRSNNTDCLVERNVNAALKDTMAQSEALFLER 122 Query: 122 LTQYSIECLV 131 ++E L+ Sbjct: 123 FGAITLESLL 132 >gi|153814767|ref|ZP_01967435.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756] gi|145847798|gb|EDK24716.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756] Length = 136 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 9/130 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I + +D +A + + + + KILQ L AG++E RG GGV + RP Sbjct: 2 AIHMFACIDTFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG-TGGVTITRP 60 Query: 70 ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLT 123 +QIT LDV KA E + + CP+ + + VL + A + L+ Sbjct: 61 LEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEVQKAMEEKLS 118 Query: 124 QYSIECLVRN 133 + ++ + ++ Sbjct: 119 EMTLADVKKD 128 >gi|167950664|ref|ZP_02537738.1| Iron-sulphur cluster assembly transcription factor IscR [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 108 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 RG GG L R A +I I +V+ A +ES C +H +C C + Sbjct: 2 RGPGGGYSLGREAAEIFIGEVITAVDESMDTTRCHGAH--NCQNNDRCLTHDLWADLSEQ 59 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 + L + S++ L+ +R ++K++ Sbjct: 60 IYHYLNRISLQDLM-DRKAVKEV 81 >gi|326335576|ref|ZP_08201763.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692342|gb|EGD34294.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 143 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + Y I ++Y AI++ + + +IAE I FL KILQ L K + + +G Sbjct: 2 LSNSSKYAINAVLYLAINSSVNNKKGVKEIAETLQIPTAFLAKILQVLAKKEAICSTKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG L + + +V + S A C + C C + ++ F + Sbjct: 62 GGGFYLTEEKAKAPLASIVHYIDGSDKFAVCLLGIR-SCSEEIPCPMHYAVKPFKVRFLE 120 Query: 121 VLTQYSIE 128 L ++SIE Sbjct: 121 ELEKHSIE 128 >gi|313676819|ref|YP_004054815.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa DSM 4126] gi|312943517|gb|ADR22707.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa DSM 4126] Length = 144 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +Y IR +Y A + IA+ E F KILQ LVK +V +++G Sbjct: 2 FSKTCEYAIRATIYIANKSKEGTNVGLKDIAKNIDSPEAFTAKILQKLVKDDLVSSIKGP 61 Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L ++ ++DVV+ + S C C C + ++ Sbjct: 62 NGGFSLSATQQKEVYLIDVVRCIDGSQTYDGC-GLGLSQCSEEKPCPIHFQFKEVRTKLK 120 Query: 120 DVLTQY 125 +L Sbjct: 121 RMLENT 126 >gi|206969275|ref|ZP_03230230.1| rrf2 family protein [Bacillus cereus AH1134] gi|218235528|ref|YP_002368113.1| rrf2 family protein [Bacillus cereus B4264] gi|206736316|gb|EDZ53474.1| rrf2 family protein [Bacillus cereus AH1134] gi|218163485|gb|ACK63477.1| rrf2 family protein [Bacillus cereus B4264] gi|326941103|gb|AEA16999.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 137 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 17/132 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------D 120 D+I + + + T E + +C S+ C + S +RK L A F + Sbjct: 68 LDEINLWHIYQITSEGALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGE 119 Query: 121 VLTQYSIECLVR 132 L Y+++ +V Sbjct: 120 YLKNYTMKEVVD 131 >gi|332687403|ref|YP_004457176.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371412|dbj|BAK22367.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC 35311] Length = 141 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M I ++M A + +D + +I++ +S +L KI + L A ++ ++ Sbjct: 1 MKFNNSFIQSIGIIMILAKLPDDGALKSQEISQRMNVSHSYLLKIAKKLKDAELINSIAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-------CGLTSVLR 112 + GG L + D+I+ LD++ ATE E H ID + + + ++ Sbjct: 61 KTGGYVLNKSVDKISFLDILHATEGKNSFIEGIDFHPIDSIVSSNETVEEKRIVIRNIFS 120 Query: 113 KALNAFFDVLTQYSIECLVRN 133 +A + D+L + I ++ Sbjct: 121 EAEKNYKDILNNHYISEIISQ 141 >gi|256839901|ref|ZP_05545410.1| predicted protein [Parabacteroides sp. D13] gi|256738831|gb|EEU52156.1| predicted protein [Parabacteroides sp. D13] Length = 152 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 3 LTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RG 59 L+ T YG+ Y HN+ +IAE I+ L L+ LV AGI+ + G Sbjct: 2 LSNPTRYGLIACRYLVWGWHNNVWLNAPEIAERYRINVRALSPALRRLVMAGILRSQCGG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALN 116 R G L R +++T+L+VV+A E +F + C + C SC + V R L+ Sbjct: 62 TRPGFMLSRAPEEVTMLEVVRALEGNFRMDCCRTVLPCVQCSCE-TDSCRVCGVFRDMLD 120 Query: 117 AFFDVLTQYSIEC 129 L+ S+E Sbjct: 121 ELRSRLSSVSLED 133 >gi|251799050|ref|YP_003013781.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247546676|gb|ACT03695.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 141 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ R + +L I+N IA + + + +I+ L KAG++ + G G Sbjct: 2 ISSRFTVAVHILALVHINNGN-VTSEYIASSVNTNPAVIRRIMSMLSKAGLISSQPGVIG 60 Query: 63 GVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 ++L P I++LDV KA E E + + C + L+ LR A Sbjct: 61 -IKLQHPIADISLLDVYKAVELPEKKELFTLHQNTNEHCVVGKGIQQALSDPLRDAQQQM 119 Query: 119 FDVLTQYSIECLVRN 133 L++ +IE +V+ Sbjct: 120 EQSLSRTTIEQIVKK 134 >gi|149370370|ref|ZP_01890059.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified eubacterium SCB49] gi|149355921|gb|EDM44478.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified eubacterium SCB49] Length = 144 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 4/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K YGI+ +Y A + + +IAEA F K+LQ L KA I+ +G Sbjct: 2 FSKTCRYGIKATIYIAQQSQEGKRASLKEIAEAIDSPVAFTAKVLQFLSKAAIINATKGF 61 Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + ++IT+ +VKA + EC I C C + Sbjct: 62 NGGYSIEKELLEKITLKQIVKAIDGDQLFEECALGLSI-CNANEPCPMHDQFVNIRAQLN 120 Query: 120 DVLTQYSIECLVRN 133 + L ++ +V+ Sbjct: 121 NTLAASNLLSVVKE 134 >gi|16080810|ref|NP_391638.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311722|ref|ZP_03593569.1| hypothetical protein Bsubs1_20306 [Bacillus subtilis subsp. subtilis str. 168] gi|221316048|ref|ZP_03597853.1| hypothetical protein BsubsN3_20217 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320959|ref|ZP_03602253.1| hypothetical protein BsubsJ_20160 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325244|ref|ZP_03606538.1| hypothetical protein BsubsS_20326 [Bacillus subtilis subsp. subtilis str. SMY] gi|6137293|sp|P71047|YWGB_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywgB gi|1561569|emb|CAB02493.1| unknown [Bacillus subtilis subsp. subtilis str. 168] gi|2636294|emb|CAB15785.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291486345|dbj|BAI87420.1| hypothetical protein BSNT_05747 [Bacillus subtilis subsp. natto BEST195] Length = 156 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 57/116 (49%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 I++ +S +L K+++ LV+AG+ E++ G +GG L +P IT+ DV +A E Sbjct: 26 LTSEAISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVEG 85 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 + + + C L +V+ + + + +++ + S++ ++ + + Sbjct: 86 RGSMYQGKGLLQSVFEGESHCVLETVMAEIEDKWSNLMREESLQHVMDRVGELYDL 141 >gi|311745248|ref|ZP_07719033.1| Rrf2 family protein [Algoriphagus sp. PR1] gi|126577775|gb|EAZ81995.1| Rrf2 family protein [Algoriphagus sp. PR1] Length = 136 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I +L A + IA + I+ + + K + L KAG+VE+ +G+ GG +L + Sbjct: 9 AIHILTLLADSEEEWMSSDWIAGSININPVMVRKEIGVLTKAGLVESRKGKVGGSKLAKR 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127 + I + ++ A + S + + + CP+ + L S+ + N+ D L ++ Sbjct: 69 SSDIRLDEIYLAVKNSDVLGKKNLKPNVLCPIGKNINQKLGSLFSEIDNSVIDELHGKTL 128 Query: 128 ECLVRN 133 E V+ Sbjct: 129 ENFVKK 134 >gi|307702099|ref|ZP_07639106.1| RRF2 family protein [Streptococcus mitis NCTC 12261] gi|307707432|ref|ZP_07643914.1| RRF2 family protein [Streptococcus mitis NCTC 12261] gi|322377393|ref|ZP_08051884.1| Rrf2 family protein [Streptococcus sp. M334] gi|307616384|gb|EFN95575.1| RRF2 family protein [Streptococcus mitis NCTC 12261] gi|307616586|gb|EFN95776.1| RRF2 family protein [Streptococcus mitis NCTC 12261] gi|321281593|gb|EFX58602.1| Rrf2 family protein [Streptococcus sp. M334] Length = 145 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117 Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139 A L Q S+E +V + S K Sbjct: 118 RIQLAMEAELGQTSLEQVVADAESQMK 144 >gi|295690375|ref|YP_003594068.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432278|gb|ADG11450.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis ATCC 21756] Length = 139 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 4/129 (3%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T+ +D + VL++ A D P +A++ + + + L +AG V + +G GG Sbjct: 5 TRLSDV-LHVLLHMA-QVDQPLTSEVLAKSMGTNPAVFRRTMAGLREAGYVRSGKGHGGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDV 121 RL RP DQIT+L + +A A + S DC + + L+ + +A F + Sbjct: 63 WRLGRPLDQITLLAIYEALNRPRLFAIGYRSDHPDCLIEQNVNAALSETMAQAEALFIER 122 Query: 122 LTQYSIECL 130 Q +++ L Sbjct: 123 FGQVTLDQL 131 >gi|114327571|ref|YP_744728.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] gi|114315745|gb|ABI61805.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1] Length = 149 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Query: 10 GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 I V++ H + IAE ++ + +LQ L +AG++E+VRG RGG RL Sbjct: 11 AISVMLDVGFHGSRTNTVSAADIAERIGLARRGMEPLLQSLSRAGLLESVRGPRGGYRLG 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 RP I + D+V + VA+ H+ + + + + L ++ Sbjct: 71 RPKRDIRVSDIV-----AVAVADDGEGHEGPTGRLQVAVVDRLWTELEETVRAQLAAITL 125 Query: 128 ECLVRNRSS 136 + L++ ++ Sbjct: 126 DDLLKRAAA 134 >gi|163789536|ref|ZP_02183974.1| Rrf2 family protein [Carnobacterium sp. AT7] gi|159875068|gb|EDP69134.1| Rrf2 family protein [Carnobacterium sp. AT7] Length = 156 Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVR 58 M LTK + + +L + +++ S + + S ++ KI++ LV +G+ ++ Sbjct: 1 MKLTKGLEQAVCILAMLSTQDNHILITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF-------FVAECFASHKIDCPLVGSCGLTSVL 111 G GG L + ++I +L++V+A E + + F+ LT+ Sbjct: 61 GSNGGFMLAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSDIGEPASNGEK-MLTTTF 119 Query: 112 RKALNAFFDVLTQYSIECLV 131 +A + L Q ++ L+ Sbjct: 120 GEADKRYTSFLEQQTLNQLI 139 >gi|42521817|ref|NP_967197.1| hypothetical protein Bd0184 [Bdellovibrio bacteriovorus HD100] gi|39574347|emb|CAE77851.1| hypothetical protein with transcriptional regulator domain [Bdellovibrio bacteriovorus HD100] Length = 151 Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 60/138 (43%), Gaps = 3/138 (2%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLV-KAGIVETVRG 59 + ++ +Y + L Y + +++++ +++Q + K GI+ G Sbjct: 3 KINRKLEYALMALKYMSQKIPGELTTAKEVSDSFHTPFDATARVMQQMAQKGGILRAEYG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG ++ + +++I D+V+ E + +C + C + G+C + S + + Sbjct: 63 ANGGYQITKDLAKVSIHDLVEVIEGPTALVKCLH-KEAPCEIQGTCNIVSPITALNDRLT 121 Query: 120 DVLTQYSIECLVRNRSSI 137 D S++ L+ R ++ Sbjct: 122 DFYKSLSLKELLVERMAM 139 >gi|116873720|ref|YP_850501.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742598|emb|CAK21722.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 156 Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58 M L+K D ++ D P I S ++ KIL+ LV +G++ +V Sbjct: 1 MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSSSYISKILRKLVVSGLINSVS 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112 G GG L + ++I +LD+V+A E + S + G +TS R Sbjct: 61 GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120 Query: 113 KALNAFFDVLTQYSIECLVRN 133 A + + L + LV Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141 >gi|188997194|ref|YP_001931445.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932261|gb|ACD66891.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium sp. YO3AOP1] Length = 142 Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 IR L+Y AI+ + + +IAE + +L K +Q LVK+GI+E+ RG +GG+ +P Sbjct: 10 IRALIYLAINQEKNYVSVKEIAEKLNLPFHYLAKNVQKLVKSGILESYRGPKGGIVFKQP 69 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 + I I+D++K+ ++ C + +C C + + N ++ L S++ Sbjct: 70 IESIKIIDIIKSLDDDRLFKSCILGFE-ECSDENPCAIHNRWVVERNHLYN-LFNTSLKD 127 Query: 130 LVRN 133 +V + Sbjct: 128 IVED 131 >gi|226311119|ref|YP_002771013.1| hypothetical protein BBR47_15320 [Brevibacillus brevis NBRC 100599] gi|226094067|dbj|BAH42509.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 145 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 7/129 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L A ++ IA+ C + + KI+ L K V+T G GG L Sbjct: 8 AVHSLALLAHIPEHMASSELIAKNVCTNPARIRKIMSILRKNEFVKTKEGIGGGYILACD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLTQ 124 +++T+ ++ ++ + C + C + + + V+ +A F L Q Sbjct: 68 PNEVTLAEIYRSISNGTLKPHWCSGDPQEACQVSAN--MHGVMDQIFTEAEMYFTKYLEQ 125 Query: 125 YSIECLVRN 133 +I+ ++ Sbjct: 126 ITIQTVLDK 134 >gi|270283926|ref|ZP_06193753.1| Rrf2 family protein [Bifidobacterium gallicum DSM 20093] gi|270277715|gb|EFA23569.1| Rrf2 family protein [Bifidobacterium gallicum DSM 20093] Length = 156 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + V++ +++ D+ + +A++ + + + +++Q L ++ RG Sbjct: 15 MQISSRFTMAVHVMVAIDVYSSDHKVTSTFLAKSVNANPVIIRRLIQQLKNDDLITVTRG 74 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113 GG L R IT+LD+ A E + + + P+ + V L + Sbjct: 75 A-GGAVLARDPQDITLLDIFDAVEAVDDAGLFNFHDNPGRSEPVGRH--IHDVLDVRLDR 131 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A L ++ L ++ Sbjct: 132 VHAAMERELQSMTVADLAQH 151 >gi|322516853|ref|ZP_08069753.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124613|gb|EFX96086.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 143 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +AE+ + ++ K++ L AG++++ +G+ G Sbjct: 3 TKFSVALHILTMISESKET-LSSQALAESVGTNASYIRKVVALLKNAGLIQSQQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120 + + IT+L++ AT+E + + +DCP+ ++ + A Sbjct: 61 QPSKSPKDITLLNIYFATQEVSHISLFPVHQNSNLDCPVGKHIQAAVSPLFASAEAQLEK 120 Query: 121 VLTQYSIECLVRN 133 L ++E ++ N Sbjct: 121 ELAHQTLEDVIDN 133 >gi|320450833|ref|YP_004202929.1| BadM/Rrf2 family transcriptional regulator [Thermus scotoductus SA-01] gi|320151002|gb|ADW22380.1| transcriptional regulator, BadM/Rrf2 family [Thermus scotoductus SA-01] Length = 139 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 + ++IA F+ K+L L KAG+VE+ GR GGV L P + IT+L V++ Sbjct: 21 EEPGLSAAEIAAKLKAPPAFMAKVLSKLAKAGLVESRMGRAGGVWLKAPPEGITLLKVME 80 Query: 81 ATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + + C + CP G C L L + L +++ L+ S Sbjct: 81 SLSGPVALDLCATLKR--CPTEERRGFCYLKPNLVRMNQEIRKALEGLTLKDLLPEASK 137 >gi|309779547|ref|ZP_07674308.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA] gi|308921788|gb|EFP67424.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA] Length = 145 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 3/116 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L A + P S IA + + + +++ L AG V + G Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEGPVPSSLIAGSVGTNPALIRRLVAQLADAGFVTSQMGA 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG L RPAD+IT+LDV + E +A + C + +T VL + Sbjct: 60 TGGATLARPADRITLLDVFRVVEAPVLIALPPNAPNPACEVGRE--ITGVLERVTE 113 >gi|319653880|ref|ZP_08007974.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2] gi|317394416|gb|EFV75160.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2] Length = 137 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + I+E+ + + + K+L L K G +++ G GG R Sbjct: 8 AIHSLTYLALQLDRMSTSDAISESAGVHPVRIRKVLSLLKKHGFIKSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYS 126 ++ + D+ K T E + +C S++ C + + L ++ A + L Y+ Sbjct: 68 LSEVNLWDIYKITSEGALQP-KCPDSNEA-CVVGANMQRVLINIFLGAEEHLGEYLKHYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 LKNIVD 131 >gi|322417915|ref|YP_004197138.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18] gi|320124302|gb|ADW11862.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18] Length = 149 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K + + + ++ A IA+ IS L KI++ LV G+V+ VRG Sbjct: 1 MKLNKASLFALIAVLELASDPKQQKSTLDIADKYGISTHHLAKIMRNLVHHGLVQAVRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG A + T+LDVV E V + DC + + + L+ N + Sbjct: 61 GGGYTFSGNAKRTTLLDVVMMFETLESVLDI----PNDC-ITEERPIVAELQAITNEIDN 115 Query: 121 ----VLTQYSIE 128 VL ++E Sbjct: 116 LTKVVLETITLE 127 >gi|321313316|ref|YP_004205603.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|320019590|gb|ADV94576.1| putative transcriptional regulator [Bacillus subtilis BSn5] Length = 156 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 57/116 (49%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 I++ +S +L K+++ LV+AG+ E++ G +GG L +P IT+ DV +A E Sbjct: 26 LTSEAISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVEG 85 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 + + + C L +V+ + + + +++ + S++ ++ + + Sbjct: 86 RGSMYQGKGLLQSVFEGESQCVLETVMAEIEDKWANLMREESLQHVMDRVGELYDL 141 >gi|289167495|ref|YP_003445764.1| hypothetical protein smi_0647 [Streptococcus mitis B6] gi|288907062|emb|CBJ21896.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 145 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGRENKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117 Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139 A L Q S+E +V + S K Sbjct: 118 RIQLAMEAELGQTSLEQVVADAESQMK 144 >gi|307323805|ref|ZP_07603014.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306890254|gb|EFN21231.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 143 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 10 GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + ++ + QIA + + + + ++L L + G+V++ RG G L Sbjct: 10 AAHALTWIGLYQRRGHDVATSEQIATSVNTNPVVIRRLLSELRRTGLVDSRRGAGAGWTL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 R IT+LDV +A E A ++ +C + G LT+V + L + Sbjct: 70 SRDLAAITLLDVYEAVEPGPVFALHRSAPDPECVVGHGIGPALTAVYGEIEATLRRELAR 129 Query: 125 YSIECLVRN 133 ++E ++R+ Sbjct: 130 TTLEDVLRD 138 >gi|299822833|ref|ZP_07054719.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816362|gb|EFI83600.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 188 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 6/145 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + I +L+ + P + I+E IS+ +L K+++ LV AG+V + G Sbjct: 32 MKLKNGIEQTICILIMLETQDKAKPLKSYTISERLGISDSYLKKVMRQLVVAGLVTSEAG 91 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-----IDCPLVGSCGLTSVLRKA 114 + GG L + A+ T+LD+ +A E D + +V +A Sbjct: 92 KDGGFILAKKAEDFTMLDIYEAIEGKESFIHSTNLAAKVFLYEDIIEAKESEILNVFFEA 151 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139 F L QY L+ N I K Sbjct: 152 EELFKIRLGQYKFSQLLMNTEQINK 176 >gi|116052211|ref|YP_788945.1| hypothetical protein PA14_09960 [Pseudomonas aeruginosa UCBPP-PA14] gi|296387274|ref|ZP_06876773.1| hypothetical protein PaerPAb_04052 [Pseudomonas aeruginosa PAb1] gi|115587432|gb|ABJ13447.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 142 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 11/136 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A H + P IA+ + + + + + L G V + +G R Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIAQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117 GG RL +P IT+LD+ +A S A ++ +C + + + L +A A Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118 Query: 118 FFDVLTQYSIECLVRN 133 + L ++E L Sbjct: 119 LLERLGSVTLEQLASE 134 >gi|30021504|ref|NP_833135.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|228973382|ref|ZP_04133970.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|29897059|gb|AAP10336.1| RRF2 family protein [Bacillus cereus ATCC 14579] gi|228786362|gb|EEM34353.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 131 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 17/132 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 2 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 61 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------D 120 D+I + + + T E + +C S+ C + S +RK L A F + Sbjct: 62 LDEINLWHIYQITSEGALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGE 113 Query: 121 VLTQYSIECLVR 132 L Y+++ +V Sbjct: 114 YLKNYTMKEVVD 125 >gi|225861464|ref|YP_002742973.1| Rrf2 family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298229231|ref|ZP_06962912.1| Rrf2 family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254514|ref|ZP_06978100.1| Rrf2 family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503378|ref|YP_003725318.1| Rrf2 family transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|225727494|gb|ACO23345.1| Rrf2 family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298238973|gb|ADI70104.1| Rrf2 family transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|327389821|gb|EGE88166.1| RRF2 family protein [Streptococcus pneumoniae GA04375] Length = 145 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + KIL L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117 Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139 L Q S+E +V + S K Sbjct: 118 RIQLTMEAELGQISLEKVVADAESQMK 144 >gi|184155425|ref|YP_001843765.1| transcription regulator [Lactobacillus fermentum IFO 3956] gi|183226769|dbj|BAG27285.1| transcription regulator [Lactobacillus fermentum IFO 3956] Length = 149 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R GI +L + ++ + ++ + IS + + +++ L +AG+V+T +G Sbjct: 1 MRASTRFSDGIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 RL R +IT+ DV A E + C + G L V ++A Sbjct: 60 TAQPRLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPQCKVGGHIQPILAEVYQEAQ 119 Query: 116 NAFFDVLTQYSIECLVRN 133 A ++ +V Sbjct: 120 AAAMIRFNNVTVADIVDQ 137 >gi|15901472|ref|NP_346076.1| Rrf2 family protein [Streptococcus pneumoniae TIGR4] gi|15903520|ref|NP_359070.1| Rrf2 family protein [Streptococcus pneumoniae R6] gi|111657543|ref|ZP_01408284.1| hypothetical protein SpneT_02001265 [Streptococcus pneumoniae TIGR4] gi|116515825|ref|YP_816905.1| Rrf2 family protein [Streptococcus pneumoniae D39] gi|148984068|ref|ZP_01817363.1| Rrf2 family protein [Streptococcus pneumoniae SP3-BS71] gi|148988679|ref|ZP_01820112.1| Rrf2 family protein [Streptococcus pneumoniae SP6-BS73] gi|148997684|ref|ZP_01825248.1| Rrf2 family protein [Streptococcus pneumoniae SP11-BS70] gi|149001909|ref|ZP_01826863.1| Rrf2 family protein [Streptococcus pneumoniae SP14-BS69] gi|149006703|ref|ZP_01830389.1| Rrf2 family protein [Streptococcus pneumoniae SP18-BS74] gi|149011509|ref|ZP_01832756.1| Rrf2 family protein [Streptococcus pneumoniae SP19-BS75] gi|149021274|ref|ZP_01835520.1| Rrf2 family protein [Streptococcus pneumoniae SP23-BS72] gi|168483494|ref|ZP_02708446.1| Rrf2 family protein [Streptococcus pneumoniae CDC1873-00] gi|168487275|ref|ZP_02711783.1| Rrf2 family protein [Streptococcus pneumoniae CDC1087-00] gi|168491484|ref|ZP_02715627.1| Rrf2 family protein [Streptococcus pneumoniae CDC0288-04] gi|168493534|ref|ZP_02717677.1| Rrf2 family protein [Streptococcus pneumoniae CDC3059-06] gi|168575177|ref|ZP_02721140.1| Rrf2 family protein [Streptococcus pneumoniae MLV-016] gi|169832589|ref|YP_001695027.1| Rrf2 family protein [Streptococcus pneumoniae Hungary19A-6] gi|182684580|ref|YP_001836327.1| rrf2 family protein [Streptococcus pneumoniae CGSP14] gi|194396960|ref|YP_002038252.1| RRF2 family protein [Streptococcus pneumoniae G54] gi|221232378|ref|YP_002511531.1| transcriptional regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225857253|ref|YP_002738764.1| Rrf2 family protein [Streptococcus pneumoniae P1031] gi|225859392|ref|YP_002740902.1| Rrf2 family protein [Streptococcus pneumoniae 70585] gi|237649186|ref|ZP_04523438.1| Rrf2 family protein [Streptococcus pneumoniae CCRI 1974] gi|237822263|ref|ZP_04598108.1| Rrf2 family protein [Streptococcus pneumoniae CCRI 1974M2] gi|303253989|ref|ZP_07340109.1| putative transcriptional regulator protein [Streptococcus pneumoniae BS455] gi|303258562|ref|ZP_07344542.1| rrf2 family protein [Streptococcus pneumoniae SP-BS293] gi|303262652|ref|ZP_07348592.1| rrf2 family protein [Streptococcus pneumoniae SP14-BS292] gi|303263591|ref|ZP_07349513.1| rrf2 family protein [Streptococcus pneumoniae BS397] gi|303266965|ref|ZP_07352840.1| rrf2 family protein [Streptococcus pneumoniae BS457] gi|303269871|ref|ZP_07355615.1| rrf2 family protein [Streptococcus pneumoniae BS458] gi|307068264|ref|YP_003877230.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|307127846|ref|YP_003879877.1| RRF2 family protein [Streptococcus pneumoniae 670-6B] gi|14973126|gb|AAK75716.1| Rrf2 family protein [Streptococcus pneumoniae TIGR4] gi|15459135|gb|AAL00281.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076401|gb|ABJ54121.1| Rrf2 family protein [Streptococcus pneumoniae D39] gi|147756183|gb|EDK63225.1| Rrf2 family protein [Streptococcus pneumoniae SP11-BS70] gi|147759718|gb|EDK66708.1| Rrf2 family protein [Streptococcus pneumoniae SP14-BS69] gi|147761618|gb|EDK68582.1| Rrf2 family protein [Streptococcus pneumoniae SP18-BS74] gi|147764499|gb|EDK71430.1| Rrf2 family protein [Streptococcus pneumoniae SP19-BS75] gi|147923357|gb|EDK74470.1| Rrf2 family protein [Streptococcus pneumoniae SP3-BS71] gi|147925880|gb|EDK76955.1| Rrf2 family protein [Streptococcus pneumoniae SP6-BS73] gi|147930375|gb|EDK81359.1| Rrf2 family protein [Streptococcus pneumoniae SP23-BS72] gi|168995091|gb|ACA35703.1| Rrf2 family protein [Streptococcus pneumoniae Hungary19A-6] gi|172043161|gb|EDT51207.1| Rrf2 family protein [Streptococcus pneumoniae CDC1873-00] gi|182629914|gb|ACB90862.1| rrf2 family protein [Streptococcus pneumoniae CGSP14] gi|183569828|gb|EDT90356.1| Rrf2 family protein [Streptococcus pneumoniae CDC1087-00] gi|183574285|gb|EDT94813.1| Rrf2 family protein [Streptococcus pneumoniae CDC0288-04] gi|183576253|gb|EDT96781.1| Rrf2 family protein [Streptococcus pneumoniae CDC3059-06] gi|183578739|gb|EDT99267.1| Rrf2 family protein [Streptococcus pneumoniae MLV-016] gi|194356627|gb|ACF55075.1| RRF2 family protein [Streptococcus pneumoniae G54] gi|220674839|emb|CAR69413.1| putative transcriptional regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225722037|gb|ACO17891.1| Rrf2 family protein [Streptococcus pneumoniae 70585] gi|225725981|gb|ACO21833.1| Rrf2 family protein [Streptococcus pneumoniae P1031] gi|301800456|emb|CBW33090.1| putative transcriptional regulator protein [Streptococcus pneumoniae OXC141] gi|301802339|emb|CBW35093.1| putative transcriptional regulator protein [Streptococcus pneumoniae INV200] gi|302599077|gb|EFL66103.1| putative transcriptional regulator protein [Streptococcus pneumoniae BS455] gi|302636208|gb|EFL66703.1| rrf2 family protein [Streptococcus pneumoniae SP14-BS292] gi|302640063|gb|EFL70518.1| rrf2 family protein [Streptococcus pneumoniae SP-BS293] gi|302640606|gb|EFL71009.1| rrf2 family protein [Streptococcus pneumoniae BS458] gi|302643482|gb|EFL73754.1| rrf2 family protein [Streptococcus pneumoniae BS457] gi|302646629|gb|EFL76854.1| rrf2 family protein [Streptococcus pneumoniae BS397] gi|306409801|gb|ADM85228.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|306484908|gb|ADM91777.1| RRF2 family protein [Streptococcus pneumoniae 670-6B] gi|332072803|gb|EGI83284.1| RRF2 family protein [Streptococcus pneumoniae GA17545] gi|332073970|gb|EGI84448.1| RRF2 family protein [Streptococcus pneumoniae GA41301] gi|332199666|gb|EGJ13741.1| RRF2 family protein [Streptococcus pneumoniae GA41317] gi|332200197|gb|EGJ14270.1| RRF2 family protein [Streptococcus pneumoniae GA47368] gi|332201063|gb|EGJ15134.1| RRF2 family protein [Streptococcus pneumoniae GA47901] Length = 145 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + KIL L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117 Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139 L Q S+E +V + S K Sbjct: 118 RIQLTMEAELGQTSLEKVVADAESQMK 144 >gi|226227480|ref|YP_002761586.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226090671|dbj|BAH39116.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 146 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 2/132 (1%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ ++ +R ++ A H + +A+ +L K L L KAG+V + RG Sbjct: 2 LSATAEHAMRAVLLLARHGNATALSADAMADQLGAPRNYLAKTLNALAKAGVVHSARGAA 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L P D +T+ ++ ++ V C + C + C L + Sbjct: 62 GGFTLAVPPDVLTVQRIIAPFDDHSRVPACLLRNHA-CDSLNPCALHDRWNAIVGYAGRQ 120 Query: 122 LTQYSIECLVRN 133 ++ L+ + Sbjct: 121 FAVTTVADLLSD 132 >gi|167621776|ref|YP_001676561.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167351517|gb|ABZ74247.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 141 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+ ++ +H D S I E+ + +L L KAG+V T RGR G L R Sbjct: 11 GVHIMQVLHVHADRKITSSFITESVNTDAGSVRLVLSKLAKAGLVTTTRGRGGSSALARA 70 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127 AD IT+LD+ +AT A + C + ++ VL AF L + + Sbjct: 71 ADTITMLDIYRATAAPAVFAVHGHPVEKTCVVSTHHKKTMSRVLEDCQGAFEASLARTRL 130 Query: 128 ECLVR 132 +V Sbjct: 131 SDVVE 135 >gi|270293196|ref|ZP_06199407.1| Rrf2 family protein [Streptococcus sp. M143] gi|270279175|gb|EFA25021.1| Rrf2 family protein [Streptococcus sp. M143] Length = 145 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 11/144 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R +L+ A+ +A + ++ + + K L L A ++ RG Sbjct: 1 MQISSRFTIATHMLIIIALEGKKTKVTSDFLAASVGVNPVIIRKTLSQLKNAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112 GG + + I++ DV +A E +S + + +CP+ + + VL Sbjct: 61 -TGGTEILKDLQDISLFDVYQAVECLGKSGKLFSFHDNPNPNCPVGAN--IHEVLDQKLL 117 Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136 A + L Q S+ +V + + Sbjct: 118 DIQEAMENQLRQTSLAQVVADAEA 141 >gi|307709575|ref|ZP_07646029.1| transcriptional regulator family protein [Streptococcus mitis SK564] gi|307619706|gb|EFN98828.1| transcriptional regulator family protein [Streptococcus mitis SK564] Length = 145 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHEVLDQKLE 117 Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139 A L Q S+E +V + S K Sbjct: 118 RIQLAMETELGQTSLEQVVADAESQMK 144 >gi|170697290|ref|ZP_02888384.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|170137910|gb|EDT06144.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] Length = 146 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA C + + + ++L L +G V++ +G Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++ L++A Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 121 ARFDEVTLGMLSRD 134 >gi|115360049|ref|YP_777187.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285337|gb|ABI90853.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria AMMD] Length = 146 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA + + + ++L L +G V++ +G Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDSGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++ L++A Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 121 ARFGEVTLGMLSRD 134 >gi|284048055|ref|YP_003398394.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] gi|283952276|gb|ADB47079.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] Length = 144 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + I +L + D+ +A + + + + ++ L KAG++ RG Sbjct: 1 MQVSTKFTIAIHILAAASYFGKDHKVTSEFLAGSIGCNPVIVRNLMMDLKKAGLISVRRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSC--GLTSVLRKALN 116 GGV + RP DQIT DV A E + + CP+ + L L Sbjct: 61 P-GGVEVTRPLDQITFRDVYDAVETRKDRLFNFHENPNPLCPVGRNIHQALDGKLLDIQK 119 Query: 117 AFFDVLTQYSIECLVRN 133 F + L +++ +V + Sbjct: 120 QFQEDLRGHTLAEVVGD 136 >gi|187777108|ref|ZP_02993581.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC 15579] gi|187774036|gb|EDU37838.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC 15579] Length = 125 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + IA + + + + +++ L +AG+V + G G L + DQIT+LDV Sbjct: 1 MEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGTGGAYLL-KDLDQITLLDV 59 Query: 79 VKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN- 133 +A + + + + S I+CP+ + + VL A A VL ++E +V Sbjct: 60 YRAVDVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQEAMEQVLENVTMEYIVTGI 119 Query: 134 RSSIKK 139 R IKK Sbjct: 120 RKKIKK 125 >gi|307707011|ref|ZP_07643808.1| transcriptional regulator family protein [Streptococcus mitis SK321] gi|307617537|gb|EFN96707.1| transcriptional regulator family protein [Streptococcus mitis SK321] Length = 145 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + K L L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117 Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139 A L Q S+E +V + + K Sbjct: 118 RIQLAMEAELGQTSLEQVVADAETQMK 144 >gi|260662062|ref|ZP_05862958.1| transcription regulator [Lactobacillus fermentum 28-3-CHN] gi|260553445|gb|EEX26337.1| transcription regulator [Lactobacillus fermentum 28-3-CHN] Length = 149 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L + ++ + ++ + IS + + +++ L +AG+V+T +G Sbjct: 1 MRASTRFSDAIHILCFLQVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 RL R +IT+ DV A E + C + G L V ++A Sbjct: 60 TAQPRLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPRCKVGGHIQPILAEVYQEAQ 119 Query: 116 NAFFDVLTQYSIECLVRN 133 A ++ +V Sbjct: 120 AAAMIRFNNVTVADIVDQ 137 >gi|167755758|ref|ZP_02427885.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402] gi|237734725|ref|ZP_04565206.1| transcriptional regulator [Mollicutes bacterium D7] gi|167704697|gb|EDS19276.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402] gi|229382053|gb|EEO32144.1| transcriptional regulator [Coprobacillus sp. D7] Length = 146 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + I +L+ A +++ P + I+++ +S+ +L KI++ LV AG++ + G Sbjct: 1 MKVKNSVEQAICLLIIIAHSNDEKPLKSYNISDSLGVSDSYLKKIIRQLVVAGLITSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE 84 ++GGV L R D+IT+LD+ +A E Sbjct: 61 KKGGVCLSRKPDKITLLDIFEAIEG 85 >gi|332653231|ref|ZP_08418976.1| Rrf2 family protein [Ruminococcaceae bacterium D16] gi|332518377|gb|EGJ47980.1| Rrf2 family protein [Ruminococcaceae bacterium D16] Length = 152 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 10/146 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + + L++ ++E+ + + + IL L KAG++ RG Sbjct: 1 MQISMKCSIAVHCLIFIHEAKGIAKVTSGLLSESTGSNPVVIRNILSALKKAGLITVPRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCGLTSVL----RK 113 GG LC QIT+ + A E + + + CP+ + + VL +K Sbjct: 61 -TGGAELCADPSQITLYQIYTALEPNGLSSLIGIHPCQQRPCPVAQN--IRRVLQTPYQK 117 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKK 139 ++ + +++ ++ + + Sbjct: 118 IEDSIKQAMEGITLQSMIDEFEHLAR 143 >gi|227544764|ref|ZP_03974813.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908989|ref|ZP_07126452.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185250|gb|EEI65321.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894396|gb|EFK87754.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 151 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 4/146 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I P + IA S + + +++ L KAG++ TV G Sbjct: 1 MKISTRFSDSIHILAFINICQGIIPLTSNNIASTIETSPVVVRRLMSALNKAGLINTVHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 L + + I++ DV A E + C + G+ L ++A A Sbjct: 61 AA-DPALAKSPENISLYDVFLAIEGDAHLFTIDERTNPQCIVGGNIQETLDGFYQQAETA 119 Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143 L + S++ ++ + + +A Sbjct: 120 AKAKLARISLQDVIDTIRVKQALKDA 145 >gi|296535176|ref|ZP_06897398.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas cervicalis ATCC 49957] gi|296264504|gb|EFH10907.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas cervicalis ATCC 49957] Length = 154 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 10 GIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +++ A H + + IA+ + + +LQ L +AGI+ + RG +GG RL Sbjct: 11 AVAIVLDVAFHAGRGSTVPAGDIADRLGEARRGIEPVLQALSRAGILGSTRGPKGGYRLG 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 R A IT+ ++ A + + + L + ++ A L + +I Sbjct: 71 RAARDITLAELAAAITGPDAPRDGDEADPAAPSPLQEKVLRPLWQELEAALLAQLGELTI 130 Query: 128 ECLVRN 133 L+R Sbjct: 131 AELLRR 136 >gi|312862875|ref|ZP_07723115.1| transcriptional regulator, Rrf2 family [Streptococcus vestibularis F0396] gi|311101735|gb|EFQ59938.1| transcriptional regulator, Rrf2 family [Streptococcus vestibularis F0396] Length = 143 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +AE+ + ++ K++ L AG++++ +G+ G Sbjct: 3 TKFSVALHILTMISESKET-LSSQALAESVGTNASYIRKVVALLKNAGLIQSQQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120 + + IT+L++ AT+E + + +DCP+ ++ + A Sbjct: 61 QPSKSPKDITLLNIYFATQEVSHISLFPVHQNSNLDCPVGKHIQAAVSPLFVSAEAQLEK 120 Query: 121 VLTQYSIECLVRN 133 L ++E ++ N Sbjct: 121 ELAHQTLEDVIDN 133 >gi|329923736|ref|ZP_08279131.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] gi|328941102|gb|EGG37404.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] Length = 120 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 15/107 (14%) Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF-------- 92 + KI+ L + GIV V G GG L +PA QIT L+V++ E + EC Sbjct: 1 MSKIMSKLRQDGIVRAVPGVNGGYELAKPARQITFLEVIQVIEGRQQLFECSNLNSQQHR 60 Query: 93 -------ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + D P C + V+ A L + +I+ ++ Sbjct: 61 LLTEEKPSDRNEDKPGACVCLVKQVMDGAERQLNQYLEEQTIQSVLD 107 >gi|325289388|ref|YP_004265569.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] gi|324964789|gb|ADY55568.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus glycolicus DSM 8271] Length = 155 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R + +LM A + Y S ++++ ++ + + I L KA I++ G Sbjct: 1 MRASTRFAIAVHILMLTAAFQDKYKITSSMLSDSTGVNAVIIRNIFSKLKKAKIIQVSPG 60 Query: 60 RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113 G ++L + +QI++ D+ EE V + DCP+ S +T +L K Sbjct: 61 TSG-IKLIKKPEQISLFDIYATVEIEEPINVLSIHQNIPCDCPIGIS--VTDILMKHFIT 117 Query: 114 ALNAFFDVLTQYSIECLVRN 133 A A + L++ S+ L+ Sbjct: 118 AATAMENELSKVSLLDLLNE 137 >gi|254254969|ref|ZP_04948286.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158] gi|124899614|gb|EAY71457.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158] Length = 146 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA + + + ++L L G V++ +G Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSETIATMLGTNAVVVRRLLGGLRDCGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++VL+ A A Sbjct: 61 GGWALGVALDDITLLDVYRAVGEPPLFSDLVSEDTPECLVEQAVNAHLSAVLKDAEAALL 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L R Sbjct: 121 ARFGEVTLGMLSRE 134 >gi|255657056|ref|ZP_05402465.1| hypothetical protein CdifQCD-2_15486 [Clostridium difficile QCD-23m63] gi|296452113|ref|ZP_06893824.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08] gi|296877469|ref|ZP_06901502.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07] gi|296259063|gb|EFH05947.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08] gi|296431481|gb|EFH17295.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07] Length = 145 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 5/143 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + +++L+ + +D I+++ + + + ++ L +AGI+ GR Sbjct: 1 MRMSTQFTVSVQMLLLIMVLDDRKVTSEMISKSTGGNPVMVRQLFGKLKEAGILNVSAGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L + +I++ D+ A EE S + + C + L + L +A++ Sbjct: 61 -GATVLAKKPSEISLWDIYMAVEEYSSSELFKFHPKISEGCNIGRFFKEILGNHLDEAIH 119 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 A D +++ S+ L+ S+ K Sbjct: 120 AMADKMSKVSLAQLLEEWESVNK 142 >gi|304385691|ref|ZP_07368035.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328195|gb|EFL95417.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 160 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 17/143 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R I VL Y A +H+ P IA + + + +I+ L KAG+++T G Sbjct: 3 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 62 Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117 + L R +QI++LD+ + +E + + DC + G+ ++ ALNA Sbjct: 63 KP-QPALTRAPEQISLLDIFNSLDEADTNLIQVDPKTNPDCVVGGN------IQDALNAQ 115 Query: 118 -------FFDVLTQYSIECLVRN 133 D + + ++ ++++ Sbjct: 116 YAHFQKVVQDEMAKTTLADVIQD 138 >gi|297561597|ref|YP_003680571.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846045|gb|ADH68065.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 150 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 10 GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + ++ + QIA + + + + ++L L KAG+ ++ RG G L Sbjct: 17 AAHALTWIGLYQRRGHEVATSEQIATSVNTNPVVIRRLLAKLNKAGLADSRRGAGAGWML 76 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 R IT+LDV +A E A A+ +C + G +T+V A L + Sbjct: 77 ARDLAAITLLDVYQAIEPGPVFALHRATPDPECVVGHGIGPAMTAVYDGVEAALRGELAK 136 Query: 125 YSIECLVRN 133 ++E ++R+ Sbjct: 137 TTLEDVLRD 145 >gi|171317789|ref|ZP_02906970.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] gi|171097073|gb|EDT41928.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] Length = 146 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA + + + ++L L G V++ +G Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDCGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++ L++A Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 121 ARFGEVTLGMLSRD 134 >gi|118588622|ref|ZP_01546030.1| Transcriptional regulator family protein [Stappia aggregata IAM 12614] gi|118438608|gb|EAV45241.1| Transcriptional regulator family protein [Stappia aggregata IAM 12614] Length = 137 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ D P QI + + + + + L +AG V +G GG L + Sbjct: 2 LHVLLHLDQTQD-PVTSDQIGKMLNTNPSLVRRTMAGLREAGFVGATKGHGGGWVLAKNL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIE 128 D I++ +V A A ++ C L + ++ L A F + L Q ++ Sbjct: 61 DSISLAEVYAALGSPQLFAVGKSADAPTCLLEQAANRATSAALEAARETFQEKLGQVTVA 120 Query: 129 CLVRNRSS 136 LVR + Sbjct: 121 DLVRPHAQ 128 >gi|325000811|ref|ZP_08121923.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia sp. P1] Length = 158 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 10 GIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 ++ ++Y AI + +Q+AEA + + K+L PL G++ + +GR GG RL Sbjct: 19 ALQAMLYLAIAAERDEPTTSSAQLAEALGTNPSLVRKLLVPLGAGGLIVSTKGRTGGTRL 78 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 RPA++IT+ ++ + + C + C G+ + + A + L Sbjct: 79 SRPAERITLAEIYRCAVGEKPLWACRPESEHVCLDTGNAARYFAELTAETERAVLESLEH 138 Query: 125 YSIECLVRNRSSIKK 139 ++ V + + Sbjct: 139 RTLAGAVAEMRRLDR 153 >gi|315497324|ref|YP_004086128.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis excentricus CB 48] gi|315415336|gb|ADU11977.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis excentricus CB 48] Length = 163 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D ++A+ + + + +++ L G+V++ +G GG RL RP Sbjct: 11 LHVLLHLA-DTDKAVTSERLAQMMSTNPVVIRRVMAGLRAQGLVQSEKGHGGGWRLGRPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 ++T+ +V +A E A + +C + + + + L +A + ++ Sbjct: 70 KEVTLAEVYRAVGEPELFAMGNRTENPECLVEQAVNAAIDNALSEAEALLMQRFGEVTLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 MLAAD 134 >gi|312960535|ref|ZP_07775041.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] gi|311285061|gb|EFQ63636.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] Length = 145 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 7/141 (4%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + + L L + G V + +G + Sbjct: 6 RLSRM----LHVLIHMGRHEER-ATSETIAQMLGTNPVVVRRTLGLLKEKGYVRSEKGHQ 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L +P +IT+LD+ A A ++ C + + LT +A Sbjct: 61 GGWSLGKPLSEITLLDIHNALGTPSIFAIGLSTDHPQCLVEQAVNAALTDAFEQAQALLL 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L + ++ L N ++ Sbjct: 121 KRLGKVTLAQLAENFDERYRV 141 >gi|15891276|ref|NP_356948.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str. C58] gi|15159651|gb|AAK89733.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str. C58] Length = 173 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MHL ++T+ +L CA + ++A+ ++ ++++ L + G++++ RG Sbjct: 1 MHLKRQTEIAFGILAVCARQEGEIISVQKVAQEIGATKDHTYQVVALLARNGLLQSERGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--- 117 GG++L R + + +V++ + D + L + ++ Sbjct: 61 GGGLKLARDPRSVKLAEVLRLVQPELL------GEGADVLSSPQSETEAFLGRIVSTTSS 114 Query: 118 -FFDVLTQYSIECLVRNRSSIK 138 F +L ++++ L+ S+++ Sbjct: 115 FFARLLDRFTVADLIAPESNLR 136 >gi|218515594|ref|ZP_03512434.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 76 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61 Query: 62 GGVRLCRPADQITIL 76 GG L RPA +I I Sbjct: 62 GGYSLSRPASEIRIG 76 >gi|121607635|ref|YP_995442.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552275|gb|ABM56424.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter eiseniae EF01-2] Length = 174 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 9/130 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK +L + H IA+ ++ + +I+ LV+AG++ + RG Sbjct: 1 MKSTKFVT-ACYILSFVTYHGPDMIPTQTIAKWVNVNASRVRQIVARLVRAGLLASTRGG 59 Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVL----RKAL 115 GGV + R IT+LDV A E+ + C + D C + SVL + Sbjct: 60 EGGVVIGRAPSDITLLDVFDAVAEQDTALF-CVDNPFSDWK--DRCRVHSVLTTMRGELE 116 Query: 116 NAFFDVLTQY 125 F L Sbjct: 117 RDFRSKLANT 126 >gi|303327292|ref|ZP_07357734.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] gi|302863280|gb|EFL86212.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp. 3_1_syn3] Length = 181 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 D P S++A ISE F+ KI++ L GIV+++RG GG L R D +++ D+ Sbjct: 20 QAEDMPASASELAVCTGISEKFVQKIMRLLQSGGIVKSIRGIAGGHVLARNPDDVSLADI 79 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN-RSSI 137 + A E + + C V A + + L ++ + ++ +S+ Sbjct: 80 IAAVEGGITLP--GVNSAAPCGRVA----LDAWADAARSLQNSLGSVTLGSVRQSCGASL 133 Query: 138 KKIFN 142 + + + Sbjct: 134 RAVLS 138 >gi|262281617|ref|ZP_06059391.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262256943|gb|EEY75687.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 67 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+ Sbjct: 4 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 63 Query: 61 RGGV 64 GG+ Sbjct: 64 GGGI 67 >gi|304408323|ref|ZP_07389971.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304342792|gb|EFM08638.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 149 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 16/134 (11%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ + + + +A FL +I+ LV+AG+VE GR GG L + Sbjct: 17 AVHALVWLS-QSGCVVSSAMMAGQVNSHATFLRRIMVHLVQAGMVEAKEGRDGGYFLRKS 75 Query: 70 ADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCG---------LTSVLRKALNAFF 119 IT+ DV A ++C + G CG L S++ +A Sbjct: 76 PADITLADVYMAV-----KSDCGTEQASVAADDEGGCGAAGQQLDSVLESIMGQAEQHTI 130 Query: 120 DVLTQYSIECLVRN 133 D L Q++++ ++R Sbjct: 131 DYLRQFTVDDVMRQ 144 >gi|257468365|ref|ZP_05632459.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317062638|ref|ZP_07927123.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313688314|gb|EFS25149.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 144 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T+ T+ I+ ++Y + + + I ++ S+ F+ K+L+PL A IV RG Sbjct: 1 MKITQETNCAIKTILYLSTLQKGEISPAKTIGKSIGFSDKFVLKVLRPLTSANIVLPFRG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG L + D+IT+ DV+ A + + + + S+ + Sbjct: 61 VTGGYCLGKTTDKITLFDVIVAVQNDINILTVMKNMSKKDIKKDE--IFSIFDQIQELEK 118 Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142 +L + + + ++ N+ ++K I Sbjct: 119 KILKKITFDMIINNKVNLKNILE 141 >gi|104774105|ref|YP_619085.1| DeoR family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514174|ref|YP_813080.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423186|emb|CAI97984.1| Transcriptional regulator (DeoR family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093489|gb|ABJ58642.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 153 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ + IA + S + + +++ L AG ++T G Sbjct: 1 MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 L R I++L++ ATE + DC + G+ LT A A Sbjct: 61 SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAETA 119 Query: 118 FFDVLTQYSIECLVR 132 VL + S++ ++ Sbjct: 120 AEAVLGKISLQDVID 134 >gi|311030960|ref|ZP_07709050.1| transcriptional regulator, BadM/Rrf2 family protein [Bacillus sp. m3-13] Length = 137 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 TK I+ L+ A +N+ ++AE +FL KIL+ LVK +++ GR GG Sbjct: 8 TKWFSVAIQALVVLA-NNEGRCPSGELAEKLNSKSVFLRKILRHLVKTELIQAKEGRDGG 66 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKALNAFF 119 L + +I + +V A + F F +C C L + Sbjct: 67 YFLVKDPSEIKLSEVYDAMKAETFPKGFFNVESKECFASTTRESLCTLR---DEMEGWVV 123 Query: 120 DVLTQYSIECLVRN 133 L Q +I L++ Sbjct: 124 AGLEQKTIADLMKK 137 >gi|294650114|ref|ZP_06727497.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|292824021|gb|EFF82841.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 139 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A N +IA + + + + + L AG++++V+G +GG L Sbjct: 2 LHVLLHMARQN-KIFTSEEIAHMLSTNAVVVRRTMAGLKNAGLIQSVKGPKGGWHLIADL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 ++ T+LD+ A E A +C V + L +++A + L ++ Sbjct: 61 EKTTLLDIYNAVGEPTIFAIGNERENPECGVERVVNAALEDAMQQAQDILLAKLKATTLA 120 Query: 129 CLVRNRSSIKK 139 L + + Sbjct: 121 DLAYAFDQLYQ 131 >gi|120435754|ref|YP_861440.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] gi|117577904|emb|CAL66373.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] Length = 144 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 4/131 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGI+ Y A+ + + +IA F KIL L K I+ +V+G Sbjct: 2 FSKACEYGIKASTYIALQSLEGQRVSLKEIAGEIDSPIAFTAKILHQLAKNDILVSVKGP 61 Query: 61 RGGVRLCRPADQ-ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + I + +V A + C +C C L + Sbjct: 62 YGGFYIPKEKIDVIKLAAIVYAIDGDSVYTGCALGFN-ECNASKPCLLHDKFVGIRDELR 120 Query: 120 DVLTQYSIECL 130 ++L S+ L Sbjct: 121 EMLQNTSLYEL 131 >gi|152987101|ref|YP_001346310.1| hypothetical protein PSPA7_0924 [Pseudomonas aeruginosa PA7] gi|150962259|gb|ABR84284.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 142 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A H + P IA + + + + + L G V + +G R Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIAHMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117 GG RL +P IT+LD+ +A S A ++ +C + + + L +A A Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118 Query: 118 FFDVLTQYSIECLVRN 133 + L ++E L Sbjct: 119 LLERLGSVTLEQLASE 134 >gi|163857298|ref|YP_001631596.1| hypothetical protein Bpet2986 [Bordetella petrii DSM 12804] gi|163261026|emb|CAP43328.1| unnamed protein product [Bordetella petrii] Length = 148 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 7/131 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A D P +IA + + + + L K G V++ +G Sbjct: 6 RLSRM----LHVLLHMA-RADQPMTSEEIARMLGTNAAVVRRTMAGLRKVGYVQSDKGHH 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119 GG R+ R D IT+LDV +A A DC + + + LR+A Sbjct: 61 GGWRMARGLDSITLLDVHRAVGGPRIFAIGADRENPDCAVERVVNDAIADALRQAEALLV 120 Query: 120 DVLTQYSIECL 130 L ++ L Sbjct: 121 QRLGAVTLADL 131 >gi|172056218|ref|YP_001812678.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171988739|gb|ACB59661.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sibiricum 255-15] Length = 160 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + + ++ + I++ S + K+L+ LV A ++ +V G Sbjct: 1 MQMKTGVEQSVYAMLLLTFLPEKGVLPGEFISQQLGASPTYFQKLLRKLVSADLLISVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +GG RL + I + D+ +A E S + + + C L+ ++ +A + Sbjct: 61 AKGGFRLKASPETIRVFDIYEAIEGKQSLYASSGVFEDLMGIQDQNICLLSDLMAEAEQS 120 Query: 118 FFDVLTQYSIECL 130 + +L + +I+ + Sbjct: 121 WQSILKRETIDSI 133 >gi|289167407|ref|YP_003445676.1| transcriptional regulator [Streptococcus mitis B6] gi|307705473|ref|ZP_07642327.1| transcriptional regulator family protein [Streptococcus mitis SK597] gi|307707522|ref|ZP_07644004.1| YwnA [Streptococcus mitis NCTC 12261] gi|288906974|emb|CBJ21808.1| transcriptional regulator [Streptococcus mitis B6] gi|307616474|gb|EFN95665.1| YwnA [Streptococcus mitis NCTC 12261] gi|307620931|gb|EFO00014.1| transcriptional regulator family protein [Streptococcus mitis SK597] Length = 143 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +A + + ++ K++ L A ++ + +G+ G Sbjct: 3 TKFSVALHILTMISESKET-LSSQALAISVGTNASYIRKVIALLKNADLIHSQQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + ++T+L++ AT+E + + DCP+ ++ + A + Sbjct: 61 QLSKSPKKMTLLEIYYATQEINHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120 Query: 121 VLTQYSIECLVRN 133 L ++E ++ N Sbjct: 121 ELANQTLEDVIDN 133 >gi|251795969|ref|YP_003010700.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2] gi|247543595|gb|ACT00614.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2] Length = 133 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 KR +G++ L+ A + S+IAE L KIL LV+ GI+E +GR GG Sbjct: 5 KRFGFGVQALIVLASQTE-LLTSSEIAERIHCEPTALRKILSQLVEGGIIEVKQGRTGGY 63 Query: 65 RLCRPADQITILDVVKATEESFFV----AECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 +L + + +T+ +V K E + +H + S ++ + + Sbjct: 64 QLAKRPELVTLREVYKTVHEEEPPWDRMLDTTGNHHFGKKVNES--FKQIMADISDQVYF 121 Query: 121 VLTQYSIECLVR 132 VL Y+I L+ Sbjct: 122 VLGNYTISDLLD 133 >gi|237734275|ref|ZP_04564756.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382505|gb|EEO32596.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 131 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L TDY IR+++Y AI D + +++E I + +FKI + L I+ G Sbjct: 1 MQLKVSTDYAIRIVLYIAIKKD-IVQSKELSETLGIPQSTVFKIGKKLSDNEIISIATGI 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118 +GG +L + I+I ++ E + + C K C +C + V F Sbjct: 60 QGGFKLKKQPKDISIFSIIDIFEPTIRINSCLEEDKY-CSRFATETCPVRKVYCTMQKHF 118 Query: 119 FDVLTQYSIECLV 131 + L + I L+ Sbjct: 119 EEYLKKIKILDLI 131 >gi|307730053|ref|YP_003907277.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584588|gb|ADN57986.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1003] Length = 151 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +QI++LDV +A +++ A C + + L V+ +A A Sbjct: 61 GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGVIDEAQQAM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 L Q ++ + +++ Sbjct: 121 EASLAQRTLADATADLHRVER 141 >gi|116333047|ref|YP_794574.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098394|gb|ABJ63543.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis ATCC 367] Length = 146 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L Y I+ D+ + IA + + + +++ L +A ++ T +G Sbjct: 1 MRYSHKLSDAVHILAYIVIYRDHDLSSAAIAASVTSNPALVRRLMGALRRANLLATTQGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 +L R IT+LD+ +A E + C + G+ L + + A Sbjct: 61 AA-PKLARDPALITLLDIYRAVENPGDLLHVDEETNPKCIVGGNIQATLETAYSEVQQAA 119 Query: 119 FDVLTQYSIECLVRN 133 + Q ++ L+ + Sbjct: 120 ERQMQQITLASLITD 134 >gi|47097212|ref|ZP_00234776.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854] gi|47014426|gb|EAL05395.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854] Length = 67 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60 Query: 60 RRGGVRL 66 GG L Sbjct: 61 AHGGYVL 67 >gi|170696438|ref|ZP_02887565.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] gi|170138643|gb|EDT06844.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis C4D1M] Length = 151 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +QI++LDV +A +++ A C + + L ++ +A A Sbjct: 61 GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGIIDEAQQAM 120 Query: 119 FDVLTQYSIEC 129 L Q ++ Sbjct: 121 EASLAQRTLAD 131 >gi|270290058|ref|ZP_06196284.1| transcription regulator [Pediococcus acidilactici 7_4] gi|270281595|gb|EFA27427.1| transcription regulator [Pediococcus acidilactici 7_4] Length = 168 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 17/143 (11%) Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R I VL Y A +H+ P IA + + + +I+ L KAG+++T G Sbjct: 11 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 70 Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117 + L R +QI++LD+ + +E + + DC + G+ ++ ALNA Sbjct: 71 KP-QPALTRAPEQISLLDIFNSLDEADTNLIQVDPKTNPDCVVGGN------IQDALNAQ 123 Query: 118 -------FFDVLTQYSIECLVRN 133 D + + ++ ++++ Sbjct: 124 YAHFQKVVQDEMAKTTLADVIQD 146 >gi|187923598|ref|YP_001895240.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Burkholderia phytofirmans PsJN] gi|187714792|gb|ACD16016.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phytofirmans PsJN] Length = 151 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGAPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +QIT+L+V +A +++ A C + + L ++ +A A Sbjct: 61 GGGALLARAPEQITLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120 Query: 119 FDVLTQYSIEC 129 L ++ Sbjct: 121 EAALDARTLAD 131 >gi|42526313|ref|NP_971411.1| hypothetical protein TDE0801 [Treponema denticola ATCC 35405] gi|41816425|gb|AAS11292.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gi|325473257|gb|EGC76452.1| hypothetical protein HMPREF9353_02247 [Treponema denticola F0402] Length = 144 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 6/143 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + I +L+ D +AE+ + + + K++ L AG++E +G Sbjct: 1 MQIGTKFSVSIHILLCVEFFKDKCKVTSDFLAESVKTNPVVIRKLMSALKNAGLIEITQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 GG+ L + A QI+ LD+ A E + + + + +CP+ L A Sbjct: 61 -TGGIALKKKAAQISFLDIFNAVESIKDGKLFKIHDTPPNECPVAQKINFLLDGYFLDAQ 119 Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138 L ++++ ++ I+ Sbjct: 120 TTLEKKLNSFTLQSILNKIKDIQ 142 >gi|325291672|ref|YP_004277536.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp. H13-3] gi|325059525|gb|ADY63216.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp. H13-3] Length = 152 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L++ H + IA + + + + + L + G V + +G GG L RP Sbjct: 11 LHILIHMEKH-EGAATSESIAAMLQTNPVVVRRTMAGLREHGYVSSEKGHGGGWVLARPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +IT+LD+ +A + A +C + + L + +A ++ Sbjct: 70 SEITLLDIYRALGAPELFSIGLAGDNPNCVIEQAVNAALFDAMNEAETILLSRFGNITLS 129 Query: 129 CLVRN 133 L Sbjct: 130 VLAEE 134 >gi|307151464|ref|YP_003886848.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981692|gb|ADN13573.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC 7822] Length = 146 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 7/130 (5%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 Y + VL+ H I ++A IS+ +L I L + G+++ + L Sbjct: 20 VKYALLVLLELVTHPSA--SIDEMATKYLISKPYLEWICANLQRGGLIDKPKEAEEIYAL 77 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 QIT+LDVV+A E F ++ D L + + + A + L QY+ Sbjct: 78 NFQPKQITLLDVVRAIETQANPVMGFETYSPDRRL-----IHQIWHEVRTAAQNTLQQYT 132 Query: 127 IECLVRNRSS 136 +E L + ++ Sbjct: 133 LEDLCQKPNA 142 >gi|312870588|ref|ZP_07730703.1| transcriptional regulator, Rrf2 family [Lactobacillus oris PB013-T2-3] gi|311093903|gb|EFQ52232.1| transcriptional regulator, Rrf2 family [Lactobacillus oris PB013-T2-3] Length = 154 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ P IA + S + + +++ L K G++ETV G Sbjct: 1 MRVSTRLSDSIHILAFLQIYRGKVPLTSENIAGSVETSPVVVRRLMSALRKGGLIETVLG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 RL RPAD+I++ D+ A E + +C + G+ L ++A Sbjct: 61 -FADPRLARPADEISLYDIYLAVEGPDRHLFAIDEKTAPECIVGGNIQATLAEYYQQAET 119 Query: 117 AFFDVLTQYSIECLVRN 133 A L S++ ++ + Sbjct: 120 AAQAKLAGISLQDVLDS 136 >gi|225855064|ref|YP_002736576.1| Rrf2 family protein [Streptococcus pneumoniae JJA] gi|225722419|gb|ACO18272.1| Rrf2 family protein [Streptococcus pneumoniae JJA] gi|301794623|emb|CBW37071.1| putative transcriptional regulator protein [Streptococcus pneumoniae INV104] Length = 145 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ +A + ++ + + KIL L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGKKSKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTDIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117 Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139 L Q S+E +V + S K Sbjct: 118 RIQLTMEAELGQTSLEKVVADAESQMK 144 >gi|241666997|ref|YP_002985081.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862454|gb|ACS60119.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 151 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + + + L + G V + +G Sbjct: 6 RLSRM----LHVLIHMDKHQ-HSATSDMIAKMLNTNPVVVRRTMAGLREKGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119 GG L RP +IT+LDV +A E A A + +C + + L +++A Sbjct: 61 GGWTLVRPLSEITLLDVYRAIGEPHLFAIGPADDQPECLVEQAVNVVLGDAMKEAEALLL 120 Query: 120 DVLTQYSIECLVRN 133 L +++ + + Sbjct: 121 QRLDSVTLDKIAAD 134 >gi|163785917|ref|ZP_02180365.1| transcriptional regulator, BadM/Rrf2 family protein [Flavobacteriales bacterium ALC-1] gi|159877777|gb|EDP71833.1| transcriptional regulator, BadM/Rrf2 family protein [Flavobacteriales bacterium ALC-1] Length = 144 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 4/137 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGI+ +Y A ++ + +IA+ F KILQ LV+ I+ +V+G Sbjct: 2 FSKACEYGIKATIYIATNSYEKKRVSLKEIAKEIDSPVAFTAKILQDLVRHQIINSVQGA 61 Query: 61 RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + I + +V A + + C C C + + Sbjct: 62 YGGFEIEKHKIPTIKLAQIVNAIDGDKIYSGCGLGLHT-CDEEHPCPVHDKFKIVRTELK 120 Query: 120 DVLTQYSIECLVRNRSS 136 D+L ++E L + S Sbjct: 121 DMLENTNLEELALDIKS 137 >gi|116691671|ref|YP_837204.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649671|gb|ABK10311.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia HI2424] Length = 159 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA C + + + ++L L G V++ +G Sbjct: 19 RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 73 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++ L++A + Sbjct: 74 GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLL 133 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 134 ARFGEVTLGMLSRD 147 >gi|332885400|gb|EGK05649.1| hypothetical protein HMPREF9456_02451 [Dysgonomonas mossii DSM 22836] Length = 136 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L+ + D +A + I+ + + K L L K IV + G+ GG L RP Sbjct: 9 SMHILVLLSKFPDELLSSDFLAGSMNINPVLVRKELSNLRKHNIVISKEGKNGGCMLARP 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125 A++I I DV K + AS CP+ + L ++A N L Sbjct: 69 ANEIFISDVYKIVSTHSILGNELASPNPKCPVGKQ--INEHLYDLNKEAENIMISRLANQ 126 Query: 126 SIEC 129 ++ Sbjct: 127 TLAD 130 >gi|258541842|ref|YP_003187275.1| BadM/Rrf2 family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632920|dbj|BAH98895.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01] gi|256635977|dbj|BAI01946.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-03] gi|256639032|dbj|BAI04994.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-07] gi|256642086|dbj|BAI08041.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-22] gi|256645141|dbj|BAI11089.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-26] gi|256648196|dbj|BAI14137.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-32] gi|256651249|dbj|BAI17183.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654240|dbj|BAI20167.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO 3283-12] Length = 149 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 7/129 (5%) Query: 10 GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +++ A H + IAE ++ + +LQ L ++G++E++RG RGG RL Sbjct: 11 AVLIMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLG 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 RP I+++D+++A + A + ++ C K +++ ++ Sbjct: 71 RPRRDISLVDIIEAVLNTDADANDGPQGALFQKVLAPC-----WDKFDQKLITQMSKTTL 125 Query: 128 ECLVRNRSS 136 + LV+ S Sbjct: 126 DDLVKQAES 134 >gi|312129124|ref|YP_003996464.1| transcriptional regulator, badm/rrf2 family [Leadbetterella byssophila DSM 17132] gi|311905670|gb|ADQ16111.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella byssophila DSM 17132] Length = 144 Score = 86.5 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR +Y A + D + +A+A + KILQ L K I+++ +G Sbjct: 2 FSKACEYGIRAAIYIAQQSLVDRKVSLKDVAKAIESPTAYTSKILQKLSKNSIIKSDKGP 61 Query: 61 RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + +++ + +V A + C K C C + + + Sbjct: 62 TGGFSMDKTELEKVKLCSIVYAIDGDAVYTGCGLGLK-KCNENKPCPVHNQFKLIREELK 120 Query: 120 DVLTQYSIECLVRN 133 +L +++ L + Sbjct: 121 KMLETTTVKTLATD 134 >gi|259503283|ref|ZP_05746185.1| Rrf2 family protein [Lactobacillus antri DSM 16041] gi|259168738|gb|EEW53233.1| Rrf2 family protein [Lactobacillus antri DSM 16041] Length = 154 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I H P IA + S + + +++ L K G++ETV G Sbjct: 1 MRVSTRLSDSIHILAFLQIFHGKLPLTSENIAGSVRTSPVVIRRLMSALRKGGLIETVPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 RL RPA +I++ D+ A E S + +C + G+ L +A Sbjct: 61 -SADPRLARPASEISLYDIYLAVEGSDRHLFTIDEKTAPECIVGGNIQATLAEYYHQAEV 119 Query: 117 AFFDVLTQYSIECLVRN 133 A L +++ ++ + Sbjct: 120 AAQAKLATVTLQDVLDS 136 >gi|257886094|ref|ZP_05665747.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257821950|gb|EEV49080.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] Length = 155 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 66/143 (46%), Gaps = 6/143 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I VL+Y + D + S+ IA + + + KI+ L K+G++ T Sbjct: 1 MKYSLQFSD-AIHVLVYIEMFQDTQSLSSEMIASSIETNAANVRKIMSQLKKSGLIFTKT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 G+ L + DQI++LDV ++ E + + + +C + + L + Sbjct: 60 GKP-QPSLAKSPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + + + +++ L+ + ++K Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141 >gi|308068918|ref|YP_003870523.1| hypothetical protein PPE_02149 [Paenibacillus polymyxa E681] gi|305858197|gb|ADM69985.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 158 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + L+ + D I++ S + K+L+ LV + ++ +V G Sbjct: 1 MK--TGVEQSVYALLLLTMLPDKAVLPGEAISQQLGASPTYFHKLLRKLVSSDLITSVPG 58 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALN 116 +GG +L + + I + D+ A E + + L C L +++ +A Sbjct: 59 VKGGFKLKKKPEDIRVFDIYLAIEGQQTLYSSSGIYNEMLELKKDDQCCLLANLMEEAEA 118 Query: 117 AFFDVLTQYSIECLVRN 133 ++ VL + +I L + Sbjct: 119 SWKAVLKRETIASLSAD 135 >gi|148994892|ref|ZP_01823913.1| Rrf2 family protein [Streptococcus pneumoniae SP9-BS68] gi|168488651|ref|ZP_02712850.1| Rrf2 family protein [Streptococcus pneumoniae SP195] gi|147926960|gb|EDK78005.1| Rrf2 family protein [Streptococcus pneumoniae SP9-BS68] gi|183572805|gb|EDT93333.1| Rrf2 family protein [Streptococcus pneumoniae SP195] gi|332072468|gb|EGI82951.1| RRF2 family protein [Streptococcus pneumoniae GA17570] Length = 145 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R +L+ A+ + +A + ++ + + IL L KA ++ RG Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRNILSQLKKAELISVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 GG + + I++LDV +A E ++ + + +CP+ + VL + L Sbjct: 61 -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117 Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139 L Q S+E +V + S K Sbjct: 118 RIQLTMEAELGQTSLEKVVADAESQMK 144 >gi|325125866|gb|ADY85196.1| Transcription regulator (Putative) [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 153 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ + IA S + + +++ L AG ++T G Sbjct: 1 MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASYLNTSPVVVRRLMSNLRDAGFIKTTHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 L R I++L++ ATE + DC + G+ LT A A Sbjct: 61 SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAETA 119 Query: 118 FFDVLTQYSIECLVR 132 VL + S++ ++ Sbjct: 120 AEAVLGKISLQDVID 134 >gi|58039649|ref|YP_191613.1| hypothetical protein GOX1196 [Gluconobacter oxydans 621H] gi|58002063|gb|AAW60957.1| Hypothetical protein GOX1196 [Gluconobacter oxydans 621H] Length = 148 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 8/129 (6%) Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 I +++ A H + IA + + +LQ L +AG++ +VRG +GG RL Sbjct: 11 AISIMLDVAFHAGRSGVVSGADIARRGDMLRRGIEPVLQALSRAGLLSSVRGPKGGYRLG 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 RP IT+ ++V+ E + L+ + L + + + + ++ Sbjct: 71 RPPRTITLNEIVRTVTEDPEM------PGDGVNLLRTKVLEPFWQSVDHEVSEKMASVTL 124 Query: 128 ECLVRNRSS 136 E L++N Sbjct: 125 EHLLQNAEE 133 >gi|172062519|ref|YP_001810170.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171995036|gb|ACB65954.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MC40-6] Length = 146 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA C + + + ++L L +G V++ +G Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++ L++A Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 121 ARFGEVTLGMLSRD 134 >gi|299821160|ref|ZP_07053048.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] gi|299816825|gb|EFI84061.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601] Length = 146 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + GI +L Y I D IA + + + +++ LVKAG++E+ G Sbjct: 1 MKYSHKLSDGIHILAYMCICKDSDLSSKAIAASIESNPSLVRRMMAQLVKAGLIESRPGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L +PA++I++L++ +A E+ + + C + G+ L + + Sbjct: 61 VA-PVLTKPAEEISLLEIYQAIEQDHRILHVDKNTNPRCIVGGNIQHTLNGIYDQLQANV 119 Query: 119 FDVLTQYSIECLVRN 133 + + +++ +V + Sbjct: 120 EQEMREVTLQTVVDD 134 >gi|312891725|ref|ZP_07751234.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] gi|311295808|gb|EFQ72968.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter paludis DSM 18603] Length = 136 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 2/131 (1%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R + +L A +A + I+ + + K L L K +V + G+ GG Sbjct: 3 NSRFSISVHILTLLASAEGGIVTSDYLAGSININPVLVRKELINLRKHNLVGSKEGKNGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121 L +PA +I + DV +A ++S + + + CP+ L S+ A A Sbjct: 63 AYLLKPATEIRLSDVYEAVKQSPLLGQAKNTPNPACPVGRQINQHLDSLHADAERALVKQ 122 Query: 122 LTQYSIECLVR 132 L +++ V Sbjct: 123 LNTTTLQQFVN 133 >gi|313123820|ref|YP_004034079.1| transcriptional regulator, badm/rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280383|gb|ADQ61102.1| Transcriptional regulator, BadM/Rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 153 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ + IA + S + + +++ L AG ++T G Sbjct: 1 MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----AL 115 L R I++L++ ATE + DC + C + L A Sbjct: 61 SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVG--CNILPTLSDYFSHAE 117 Query: 116 NAFFDVLTQYSIECLVR 132 A VL + S++ ++ Sbjct: 118 TAAEAVLGKISLQDVID 134 >gi|146317974|ref|YP_001197686.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320161|ref|YP_001199872.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145688780|gb|ABP89286.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145690967|gb|ABP91472.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|292557757|gb|ADE30758.1| Predicted transcriptional regulator [Streptococcus suis GZ1] Length = 152 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + + +L + + +AE+ + ++ K++ L AG++ + +GR Sbjct: 9 QMDTKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGRS 67 Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117 G +L + I++L++ AT+ E + + + + CP+ + + Sbjct: 68 G-YQLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLSCPVGQHIEGAMVPIFSSVEQE 126 Query: 118 FFDVLTQYSIECLVRN 133 + L++ S++ ++ N Sbjct: 127 LENQLSRQSLDNVITN 142 >gi|300812882|ref|ZP_07093277.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496218|gb|EFK31345.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 152 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ + IA + S + + +++ L AG ++T G Sbjct: 1 MKVSTRFSDSIHLLTFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 L R I++L++ ATE + DC + G+ LT A A Sbjct: 61 SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAEIA 119 Query: 118 FFDVLTQYSIECLVR 132 VL + S++ ++ Sbjct: 120 AEAVLGKISLQDVID 134 >gi|229591081|ref|YP_002873200.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|229362947|emb|CAY49875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 145 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 7/141 (4%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + + L L + G V + +G + Sbjct: 6 RLSRM----LHVLIHMGRH-EARATSETIAQMLGTNPVVVRRTLGLLKEKGYVRSEKGHQ 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L +P +IT+LD+ A A ++ +C + + LT +A + Sbjct: 61 GGWSLGKPLSEITLLDIHNALGTPSLFAIGLSTDHPECLVEQAVNAALTDAFDQAQSLLL 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 L ++ L + +I Sbjct: 121 ARLGDVTLAQLADDFDQRYRI 141 >gi|15887587|ref|NP_353268.1| hypothetical protein Atu0237 [Agrobacterium tumefaciens str. C58] gi|15155126|gb|AAK86053.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 152 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L++ H + IA + + + + + L + G V + +G GG L +P Sbjct: 11 LHILIHMEKH-EGAATSENIAAMLQTNPVVVRRTMAGLREHGYVSSEKGHGGGWVLAQPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +IT+LD+ +A + A +C + + L + +A N ++ Sbjct: 70 TEITLLDIYRALGAPELFSIGLAGDNPNCVIEQAVNAALFDAMNEAENILLSRFGSITLS 129 Query: 129 CLVRN 133 L Sbjct: 130 TLAEE 134 >gi|327405156|ref|YP_004345994.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320664|gb|AEA45156.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis DSM 16823] Length = 144 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR ++ A + D + +AEA + KILQ L + I+ + +G Sbjct: 2 FSKACEYGIRASIFIAEQSLLDRKVSLKDVAEAIDSPASYTSKILQKLSRNNIINSDKGP 61 Query: 61 RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 GG + + +++ + +V A + C K C C + + + + Sbjct: 62 TGGFSMGKKELEKVKLSSIVFAIDGESIYNGCGLGLK-KCNEKMPCPVHNQFKMIRDQLK 120 Query: 120 DVLTQYSIECLV 131 +L ++ L Sbjct: 121 KMLETTTVLSLA 132 >gi|325686154|gb|EGD28205.1| transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 152 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + I+ + IA + S + + +++ L AG ++T G Sbjct: 1 MKVSTRFSDSIHLLTFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 L R I++L++ ATE + DC + G+ LT A A Sbjct: 61 SP-DPELLREPKDISLLEIYLATEGKSPLFTIDHETNPDCIVGGNIQPTLTDYFSHAEIA 119 Query: 118 FFDVLTQYSIECLVR 132 VL + S++ ++ Sbjct: 120 AEAVLGKISLQDVID 134 >gi|87303358|ref|ZP_01086146.1| putative transcriptional regulator [Synechococcus sp. WH 5701] gi|87282006|gb|EAQ73968.1| putative transcriptional regulator [Synechococcus sp. WH 5701] Length = 146 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 3/139 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L +R I+ L+ A+ + +A + I E L ++L L +A +VE RGR G Sbjct: 2 LKRRGLQAIQALLELALEPESWRSGPDLAASLAIPEPMLEQVLLQLRRAKLVEARRGRHG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G RL R A I +L+V++A E + + L R+ A L Sbjct: 62 GYRLQRTAAAIPLLEVLQAVEADPSQPPAVTAPSEQAGEQVALALE---RRLQLALEREL 118 Query: 123 TQYSIECLVRNRSSIKKIF 141 + ++E L+ + S ++ Sbjct: 119 ARLTLEELLYDLRSTQECL 137 >gi|170736329|ref|YP_001777589.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818517|gb|ACA93099.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia MC0-3] Length = 137 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ D P IA C + + + ++L L G V++ +G GG L Sbjct: 2 LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGGGWALSVAL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 D IT+LDV +A E ++ + +C + + L++ L++A + + ++ Sbjct: 61 DDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLARFGEVTLG 120 Query: 129 CLVRN 133 L R+ Sbjct: 121 MLSRD 125 >gi|90424127|ref|YP_532497.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90106141|gb|ABD88178.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisB18] Length = 153 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ I + P +A+A + + + +I+ L AG V + +G GG + Sbjct: 11 LHVLLHM-IGLEQPTTSEHLAKAMMTNPVVVRRIMAGLRDAGFVRSEKGHGGGWTIACDP 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 IT+ D+ +A +A + C + + L R+ AF L ++ Sbjct: 70 AAITLADIYRAVGAPAILAMGHRTESPGCLVEQAVNHALDGAFREVETAFMAKLGDVTLA 129 Query: 129 CLVRN 133 L ++ Sbjct: 130 VLAKD 134 >gi|217978393|ref|YP_002362540.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] gi|217503769|gb|ACK51178.1| transcriptional regulator, BadM/Rrf2 family [Methylocella silvestris BL2] Length = 148 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 6/130 (4%) Query: 16 YCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 AIH+ P +A + L +LQ LV+A I++ +RG RGG L R +IT Sbjct: 17 DIAIHSRPLPVAAKALAARLELPPRHLETLLQALVRANILKGLRGPRGGYELARERRKIT 76 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 V++A +++ + + + + ++ KA AF L +IE + R Sbjct: 77 AGAVLRAV-----LSDAAGPGEPADSKLVAKVIAPMVEKAGAAFLAELDNITIEDICRRA 131 Query: 135 SSIKKIFNAG 144 + +AG Sbjct: 132 DELNLYRDAG 141 >gi|15599364|ref|NP_252858.1| hypothetical protein PA4169 [Pseudomonas aeruginosa PAO1] gi|218889502|ref|YP_002438366.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254237049|ref|ZP_04930372.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242853|ref|ZP_04936175.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|9950377|gb|AAG07556.1|AE004833_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126168980|gb|EAZ54491.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196231|gb|EAZ60294.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218769725|emb|CAW25485.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 142 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A H + P I + + + + + + L G V + +G R Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117 GG RL +P IT+LD+ +A S A ++ +C + + + L +A A Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118 Query: 118 FFDVLTQYSIECLVRN 133 + L ++E L Sbjct: 119 LLERLGSVTLEQLASE 134 >gi|107103686|ref|ZP_01367604.1| hypothetical protein PaerPA_01004757 [Pseudomonas aeruginosa PACS2] Length = 133 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A H + P I + + + + + + L G V + +G RGG RL +P Sbjct: 2 LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----FFDVLTQYS 126 IT+LD+ +A S A ++ +C + + + L +A A + L + Sbjct: 61 ADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQALLLERLGSVT 118 Query: 127 IECLVRN 133 +E L Sbjct: 119 LEQLASE 125 >gi|255326646|ref|ZP_05367722.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296] gi|255295863|gb|EET75204.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296] Length = 164 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + VL + ++ +A + + ++ KI+ L KA I+ + RG+ G Sbjct: 23 TKFSVALHVLTMIS-ESEKTLSSEDLARSVGTNASYIRKIITLLKKADILSSQRGKPG-Y 80 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L RP + I++LD+ A +E S + + +CP+ + + + Sbjct: 81 QLTRPVENISLLDIYLAVQESRSINLFHTHHNANEECPVGAHILQAVNPIFEETQRHLAQ 140 Query: 121 VLTQYSIECLVRN 133 L Q S+ ++ N Sbjct: 141 DLAQRSLRNVITN 153 >gi|284036641|ref|YP_003386571.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815934|gb|ADB37772.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM 74] Length = 135 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 7 TDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + I +L A N +A + I+ + + K L L G+V + G+ GG Sbjct: 3 GRFAISMHILTLLAKANGEWLPSDLLAGSININPVLVRKELINLRNKGLVVSREGKYGGS 62 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122 L + A QI + DV AT + F+ +CP+ L + ++A A L Sbjct: 63 MLAKSAAQIRVSDVFLATRQGAFLGTSRNDPNPNCPVGKQINQHLDGLYQEAEEALLHKL 122 Query: 123 TQYSIECLVRN 133 ++ R Sbjct: 123 GDTTLADFSRR 133 >gi|226952787|ref|ZP_03823251.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226836490|gb|EEH68873.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 139 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A N +IA + + + + + L AG +++V+G +GG L Sbjct: 2 LHVLLHMARQN-KIFTSEEIAHMLSTNAVVVRRTMAGLKNAGFIQSVKGPKGGWHLIADL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 ++ T+LD+ A E A +C V + L +++A + L ++ Sbjct: 61 EKTTLLDIYNAVGEPTIFAIGNERENPECGVERVVNEALEDAMQQAQDILLAKLKATTLA 120 Query: 129 CLVRNRSSIKK 139 L + + Sbjct: 121 DLAYAFDQLYQ 131 >gi|312865004|ref|ZP_07725232.1| transcriptional regulator, Rrf2 family [Streptococcus downei F0415] gi|311099115|gb|EFQ57331.1| transcriptional regulator, Rrf2 family [Streptococcus downei F0415] Length = 142 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + + +L Y A++ + IA++ + + +++ L KAG++ T Sbjct: 1 MKQSHKLSDALHILSYIALNQERLPKISSQTIADSVGTNPGLVRRLMSNLSKAGLLITKV 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G +L + I+ DV +A E + + S DCP+ + L S ++ Sbjct: 61 GAA-KPQLAKAPKDISFYDVFEAVETDG-LLKVDESTNPDCPIGSNVPKVLPSFYQRVAK 118 Query: 117 AFFDVLTQYSIECLVRN 133 A +D + S++ ++ Sbjct: 119 AAYDEMRAISLQDMMDE 135 >gi|329768830|ref|ZP_08260259.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325] gi|328838223|gb|EGF87836.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325] Length = 167 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHIYLNSKEISKRLNISPTYLKKIMRKLVVHNLVKANTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA--------ECFASHKIDCPLVGSCGLTSVL 111 GG + R +T+ DV A V + F L V Sbjct: 61 VGGGYK-YRSNKTVTLYDVYVALNGEVEVFVLKTDYVSKIFEGALAVDKRYSE-YLRKV- 117 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 ++ + L Q +IE +V + Sbjct: 118 NTINHSIKEALEQITIEEIVED 139 >gi|115525039|ref|YP_781950.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518986|gb|ABJ06970.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris BisA53] Length = 153 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ I + P +A+A + + + +I+ L AG V + +G GG + Sbjct: 11 LHVLLHM-IGLEQPTTSEHLAKAMMTNPVVVRRIMAGLRDAGFVRSEKGHGGGWTIACDP 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 IT+ D+ +A +A + C + + L R+ AF L ++ Sbjct: 70 AAITLADIYRAVGAPAILAMGHRTESPGCLVEQAVNHALDGAFREVETAFMAKLGDVTLA 129 Query: 129 CLVRN 133 L ++ Sbjct: 130 VLAKD 134 >gi|254249066|ref|ZP_04942386.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184] gi|124875567|gb|EAY65557.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184] Length = 146 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA C + + + ++L L G V++ +G Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++ L++A + Sbjct: 61 GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLL 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 121 ARFGEVTLGMLSRD 134 >gi|256787721|ref|ZP_05526152.1| hypothetical protein SlivT_24808 [Streptomyces lividans TK24] gi|289771609|ref|ZP_06530987.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289701808|gb|EFD69237.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 144 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L ++G+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRQGHEVATSEQIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122 R +T+LDV +A E A + C + G+ V+R + L Sbjct: 70 ARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGH--GIQPVMRDVYEGIEETVRHEL 127 Query: 123 TQYSIECLVRN 133 + ++E ++RN Sbjct: 128 ARVTLEDVLRN 138 >gi|149180765|ref|ZP_01859268.1| transcriptional regulator [Bacillus sp. SG-1] gi|148851555|gb|EDL65702.1| transcriptional regulator [Bacillus sp. SG-1] Length = 206 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I+ L+ A H + +AE +FL KIL+ LVK +++ GR GG L + Sbjct: 83 AIQALLVLANH-EGLCPSGVLAEKLDSKSVFLRKILRHLVKEELIQAKEGRDGGYYLVKN 141 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF----DVLTQY 125 + I + DV A F F +C +C L + + + L Q Sbjct: 142 PEDIKLSDVYNAMRSETFSKGFFDVESKEC--FAAC-TRDSLFELRDEMESWIVNGLEQK 198 Query: 126 SIECLVRN 133 +I+ L++ Sbjct: 199 TIKDLMKQ 206 >gi|42518338|ref|NP_964268.1| hypothetical protein LJ0251 [Lactobacillus johnsonii NCC 533] gi|41582622|gb|AAS08234.1| hypothetical protein LJ_0251 [Lactobacillus johnsonii NCC 533] Length = 149 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M TK + I +L A+ +P IA++ + ++ KI+ L I+E+ RG+ Sbjct: 1 MKDTKFS-IAIHILSMIALSP-HPINSVDIAKSVGTNPSYIRKIMSLLKDHKIIESHRGK 58 Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117 G ++L + +L + K EE+ + + + +CP+ + + L A Sbjct: 59 TG-IQLLVDPGDLDLLTIYKIVEEENPHIFQVHQNANAECPVGRNIVNAVFPFLDDAEKR 117 Query: 118 FFDVLTQYSIECLVRNRSSIKK 139 L ++ ++ +++ Sbjct: 118 LQHSLQHDTLADVIDRLKQLER 139 >gi|52142135|ref|YP_084695.1| transcriptional regulator [Bacillus cereus E33L] gi|51975604|gb|AAU17154.1| possible transcriptional regulator (rrf2 family protein) [Bacillus cereus E33L] Length = 137 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 +++ + + + T E + +C S+ C + + L ++ A + L Y+ Sbjct: 68 LEEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 MKEVVD 131 >gi|308175394|ref|YP_003922099.1| hypothetical protein BAMF_3503 [Bacillus amyloliquefaciens DSM 7] gi|307608258|emb|CBI44629.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7] gi|328555369|gb|AEB25861.1| hypothetical protein BAMTA208_18555 [Bacillus amyloliquefaciens TA208] gi|328913739|gb|AEB65335.1| hypothetical protein LL3_03809 [Bacillus amyloliquefaciens LL3] Length = 134 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R I +L + D IA + + + + + + L KAGI+ + G G Sbjct: 2 INSRLAVAIHILSLIST--DERASSDMIAGSVNTNPVVVRRTISQLKKAGILTSRAGVPG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118 L + +IT+L+V +A + + + DCP+ + + L + A Sbjct: 60 -ASLKKDPSEITLLEVYRAVQNKEELFAVHDNPNPDCPVGKN--IQRALDETFGSVQRAM 116 Query: 119 FDVLTQYSIECLVRN 133 + L S+ ++ + Sbjct: 117 ENELASKSLYDVMNH 131 >gi|323525697|ref|YP_004227850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382699|gb|ADX54790.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. CCGE1001] Length = 151 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSDMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +QI++LDV +A +++ A C + + L ++ +A A Sbjct: 61 GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGIIDEAQQAM 120 Query: 119 FDVLTQYSIEC 129 L + ++ Sbjct: 121 EASLARRTLAD 131 >gi|118475649|ref|YP_892090.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus subsp. fetus 82-40] gi|118414875|gb|ABK83295.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus subsp. fetus 82-40] Length = 125 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 37/76 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 P + I++ +S+ +L ++L L AG V +++G +GG L + D+IT D+ Sbjct: 11 QKNPVSLKDISQNIGVSKNYLEQVLNTLRNAGFVSSIKGLKGGYFLNKTLDEITFYDIFY 70 Query: 81 ATEESFFVAECFASHK 96 A E F + H Sbjct: 71 ALENDFGLTSLNVEHS 86 >gi|42782474|ref|NP_979721.1| rrf2 family protein [Bacillus cereus ATCC 10987] gi|42738400|gb|AAS42329.1| rrf2 family protein [Bacillus cereus ATCC 10987] Length = 137 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 17/132 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------D 120 ++ + + + T E + +C S+ C + S +RK L A F + Sbjct: 68 LSEVNLWHIYQITSEGALQP-KCPESNN-------QCIVGSNMRKVLFAIFLGAEEHLGE 119 Query: 121 VLTQYSIECLVR 132 L Y+++ +V Sbjct: 120 YLKNYTMKEVVD 131 >gi|253751196|ref|YP_003024337.1| transcription regulation protein [Streptococcus suis SC84] gi|253753097|ref|YP_003026237.1| transcription regulation protein [Streptococcus suis P1/7] gi|253754919|ref|YP_003028059.1| transcription regulation protein [Streptococcus suis BM407] gi|251815485|emb|CAZ51063.1| putative transcription regulation protein [Streptococcus suis SC84] gi|251817383|emb|CAZ55119.1| putative transcription regulation protein [Streptococcus suis BM407] gi|251819342|emb|CAR44712.1| putative transcription regulation protein [Streptococcus suis P1/7] gi|319757466|gb|ADV69408.1| transcriptional regulator [Streptococcus suis JS14] Length = 143 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +AE+ + ++ K++ L AG++ + +GR G Sbjct: 3 TKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGRSG-Y 60 Query: 65 RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + I++L++ AT+ E + + + + CP+ + + + Sbjct: 61 QLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLSCPVGQHIEGAMVPIFSSVEQELEN 120 Query: 121 VLTQYSIECLVRN 133 L++ S++ ++ N Sbjct: 121 QLSRQSLDNVITN 133 >gi|229829819|ref|ZP_04455888.1| hypothetical protein GCWU000342_01917 [Shuttleworthia satelles DSM 14600] gi|229791808|gb|EEP27922.1| hypothetical protein GCWU000342_01917 [Shuttleworthia satelles DSM 14600] Length = 146 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 59/138 (42%), Gaps = 6/138 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + + ++ D + +A + + + + ++ L ++GI+E +G Sbjct: 1 MQITSKFTIAVHIITAIDYFKDSEKVTSNFLAGSVGANPVIVRNVMGNLKESGIIEISQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKAL 115 + G + L + D+IT DV KA + + + + I CP+ + L L++ Sbjct: 61 KSG-ISLAKGLDEITFYDVYKAVDCVDGEGLFRFHENPNIKCPVGRNIHLAMDEKLQRVQ 119 Query: 116 NAFFDVLTQYSIECLVRN 133 + + L +I + + Sbjct: 120 DTMENELRHITIADVAAD 137 >gi|30263359|ref|NP_845736.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47528737|ref|YP_020086.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186205|ref|YP_029457.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|65320688|ref|ZP_00393647.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] gi|165868327|ref|ZP_02212987.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167632500|ref|ZP_02390827.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|167637112|ref|ZP_02395392.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|170685042|ref|ZP_02876267.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|170704922|ref|ZP_02895387.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|177649964|ref|ZP_02932965.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190564684|ref|ZP_03017605.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|196035535|ref|ZP_03102939.1| rrf2 family protein [Bacillus cereus W] gi|196038146|ref|ZP_03105456.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206975367|ref|ZP_03236280.1| rrf2 family protein [Bacillus cereus H3081.97] gi|218904535|ref|YP_002452369.1| rrf2 family protein [Bacillus cereus AH820] gi|222096863|ref|YP_002530920.1| rrf2 family protein [Bacillus cereus Q1] gi|227813772|ref|YP_002813781.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229604113|ref|YP_002867615.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|254685971|ref|ZP_05149830.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066] gi|254723374|ref|ZP_05185162.1| rrf2 family protein [Bacillus anthracis str. A1055] gi|254738442|ref|ZP_05196145.1| rrf2 family protein [Bacillus anthracis str. Western North America USA6153] gi|254742392|ref|ZP_05200077.1| rrf2 family protein [Bacillus anthracis str. Kruger B] gi|254752758|ref|ZP_05204794.1| rrf2 family protein [Bacillus anthracis str. Vollum] gi|254761271|ref|ZP_05213295.1| rrf2 family protein [Bacillus anthracis str. Australia 94] gi|301054901|ref|YP_003793112.1| putative Rrf2 family transcriptional regulator [Bacillus anthracis CI] gi|30257993|gb|AAP27222.1| rrf2 family protein [Bacillus anthracis str. Ames] gi|47503885|gb|AAT32561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180132|gb|AAT55508.1| rrf2 family protein [Bacillus anthracis str. Sterne] gi|164715053|gb|EDR20570.1| rrf2 family protein [Bacillus anthracis str. A0488] gi|167514619|gb|EDR89985.1| rrf2 family protein [Bacillus anthracis str. A0193] gi|167532798|gb|EDR95434.1| rrf2 family protein [Bacillus anthracis str. A0442] gi|170129777|gb|EDS98639.1| rrf2 family protein [Bacillus anthracis str. A0389] gi|170671302|gb|EDT22040.1| rrf2 family protein [Bacillus anthracis str. A0465] gi|172083916|gb|EDT68975.1| rrf2 family protein [Bacillus anthracis str. A0174] gi|190564001|gb|EDV17965.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I] gi|195991836|gb|EDX55800.1| rrf2 family protein [Bacillus cereus W] gi|196031416|gb|EDX70013.1| rrf2 family protein [Bacillus cereus NVH0597-99] gi|206746269|gb|EDZ57663.1| rrf2 family protein [Bacillus cereus H3081.97] gi|218539133|gb|ACK91531.1| rrf2 family protein [Bacillus cereus AH820] gi|221240921|gb|ACM13631.1| rrf2 family protein [Bacillus cereus Q1] gi|227005217|gb|ACP14960.1| rrf2 family protein [Bacillus anthracis str. CDC 684] gi|229268521|gb|ACQ50158.1| rrf2 family protein [Bacillus anthracis str. A0248] gi|300377070|gb|ADK05974.1| putative transcriptional regulator, Rrf2 family [Bacillus cereus biovar anthracis str. CI] Length = 137 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 D++ + + + T E + +C S+ C + + L ++ A + L Y+ Sbjct: 68 LDEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 MKEVVD 131 >gi|227507946|ref|ZP_03937995.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192562|gb|EEI72629.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 159 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + +L+ A+ D+ P R I+ +S+ +L K+L +V G++ + G Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLRSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89 + GG L +++T+LDV A E + Sbjct: 61 KGGGFSLSYDINRMTLLDVYNAIEGPSPII 90 >gi|69245516|ref|ZP_00603480.1| Protein of unknown function UPF0074 [Enterococcus faecium DO] gi|257879779|ref|ZP_05659432.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257882506|ref|ZP_05662159.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257891620|ref|ZP_05671273.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894098|ref|ZP_05673751.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258614203|ref|ZP_05711973.1| transcription regulator [Enterococcus faecium DO] gi|260559454|ref|ZP_05831635.1| transcription regulator [Enterococcus faecium C68] gi|261206604|ref|ZP_05921302.1| transcription regulator [Enterococcus faecium TC 6] gi|289564966|ref|ZP_06445420.1| transcription regulator [Enterococcus faecium D344SRF] gi|293553612|ref|ZP_06674236.1| transcription regulator [Enterococcus faecium E1039] gi|293564096|ref|ZP_06678502.1| transcription regulator [Enterococcus faecium E1162] gi|293570033|ref|ZP_06681113.1| transcription regulator [Enterococcus faecium E1071] gi|294617015|ref|ZP_06696735.1| transcription regulator [Enterococcus faecium E1636] gi|294618251|ref|ZP_06697833.1| transcription regulator [Enterococcus faecium E1679] gi|294620949|ref|ZP_06700149.1| transcriptional regulator [Enterococcus faecium U0317] gi|314940090|ref|ZP_07847273.1| Rrf2 family protein [Enterococcus faecium TX0133a04] gi|314942501|ref|ZP_07849340.1| Rrf2 family protein [Enterococcus faecium TX0133C] gi|314949391|ref|ZP_07852732.1| Rrf2 family protein [Enterococcus faecium TX0082] gi|314952852|ref|ZP_07855824.1| Rrf2 family protein [Enterococcus faecium TX0133A] gi|314993716|ref|ZP_07859061.1| Rrf2 family protein [Enterococcus faecium TX0133B] gi|314994780|ref|ZP_07859912.1| Rrf2 family protein [Enterococcus faecium TX0133a01] gi|68195767|gb|EAN10204.1| Protein of unknown function UPF0074 [Enterococcus faecium DO] gi|257814007|gb|EEV42765.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257818164|gb|EEV45492.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257827980|gb|EEV54606.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257830477|gb|EEV57084.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260074553|gb|EEW62874.1| transcription regulator [Enterococcus faecium C68] gi|260079097|gb|EEW66790.1| transcription regulator [Enterococcus faecium TC 6] gi|289163173|gb|EFD11019.1| transcription regulator [Enterococcus faecium D344SRF] gi|291587405|gb|EFF19289.1| transcription regulator [Enterococcus faecium E1071] gi|291590169|gb|EFF21958.1| transcription regulator [Enterococcus faecium E1636] gi|291595467|gb|EFF26778.1| transcription regulator [Enterococcus faecium E1679] gi|291599479|gb|EFF30496.1| transcriptional regulator [Enterococcus faecium U0317] gi|291602187|gb|EFF32415.1| transcription regulator [Enterococcus faecium E1039] gi|291604014|gb|EFF33542.1| transcription regulator [Enterococcus faecium E1162] gi|313590964|gb|EFR69809.1| Rrf2 family protein [Enterococcus faecium TX0133a01] gi|313591816|gb|EFR70661.1| Rrf2 family protein [Enterococcus faecium TX0133B] gi|313595086|gb|EFR73931.1| Rrf2 family protein [Enterococcus faecium TX0133A] gi|313598722|gb|EFR77567.1| Rrf2 family protein [Enterococcus faecium TX0133C] gi|313640690|gb|EFS05270.1| Rrf2 family protein [Enterococcus faecium TX0133a04] gi|313644222|gb|EFS08802.1| Rrf2 family protein [Enterococcus faecium TX0082] Length = 155 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I VL Y + D + S+ IA + + + KI+ L K+G++ T Sbjct: 1 MKYSLQFSD-AIHVLAYIEMFQDTRSLSSEMIASSIETNAANVRKIMSQLKKSGLIFTKT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 G+ L + DQI++LDV ++ E + + + +C + + L + Sbjct: 60 GKP-QPSLAKSPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + + + +++ L+ + ++K Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141 >gi|294499976|ref|YP_003563676.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294349913|gb|ADE70242.1| transcriptional regulator, putative [Bacillus megaterium QM B1551] Length = 159 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 1 MHLTKRTD---YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 MH+ + Y I +L + I+ S + K+L+ LV A ++ +V Sbjct: 1 MHMKTGVEQSVYAILLLTFL--PEKAVLPGDVISTQLGGSPTYFQKLLRKLVSADLLASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKAL 115 G +GG RL + ++I I DV A E + ++ C L+ ++ +A Sbjct: 59 PGSKGGFRLKKTPEEIRIYDVYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118 Query: 116 NAFFDVLTQYSIECLVRN 133 +++ +L + +I L Sbjct: 119 SSWQSILKRQTIATLTNE 136 >gi|295705354|ref|YP_003598429.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294803013|gb|ADF40079.1| transcriptional regulator, putative [Bacillus megaterium DSM 319] Length = 159 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 1 MHLTKRTD---YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 MH+ + Y I +L + I+ S + K+L+ LV A ++ +V Sbjct: 1 MHMKTGVEQSVYAILLLTFL--PEKAVLPGDVISTQLGGSPTYFQKLLRKLVSADLLASV 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKAL 115 G +GG RL + ++I I D+ A E + ++ C L+ ++ +A Sbjct: 59 PGSKGGFRLKKTPEEIRIYDIYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118 Query: 116 NAFFDVLTQYSIECLVRN 133 +++ +L + +I L Sbjct: 119 SSWQSILKRQTIATLTNE 136 >gi|206603887|gb|EDZ40367.1| Putative transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp. Group II '5-way CG'] Length = 159 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + +AE+ + + +IL L KAG+V + +G+ GGV L + + I++L++ Sbjct: 42 KKGEWVNSAHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIF 101 Query: 80 KAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLV 131 +A EES F CP+ + + V R A L + + L+ Sbjct: 102 RAVGEESVFAFN-PNPPNPKCPVSVNMFRLIEPVFRAVGVALEKELDRIRLSDLI 155 >gi|319936607|ref|ZP_08011020.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808164|gb|EFW04729.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 141 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 64/144 (44%), Gaps = 10/144 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + I +L+ ++ P + ++++ +S+ +L K+ + LV AG++ + + Sbjct: 1 MKIRQSFEQAICILLLIGA-SESPIKSHELSDKLDVSDSYLKKVTRQLVVAGLITSKASK 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-------SVLRK 113 GG L + + I+ D+ +A E E +H ++ S + L K Sbjct: 60 LGGFVLKKRLEDISFFDIFEAIEGKEKFVE--TTHLVEKVFDPSLKVKETEAVIVDHLNK 117 Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137 A + L + +++ ++ SI Sbjct: 118 AEEQYKAKLREITLDHILSAAHSI 141 >gi|329938564|ref|ZP_08287989.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329302537|gb|EGG46428.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 147 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L +AG+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124 R IT+LDV +A E A + C + + + + L + Sbjct: 70 ARELGSITLLDVYEAVEPGPLFAMHRTTPDPGCVVGHGIQPAMRGIYQDIEETLRHELAR 129 Query: 125 YSIECLVRN 133 ++E ++ + Sbjct: 130 VTLEKVLGD 138 >gi|154687779|ref|YP_001422940.1| YwnA [Bacillus amyloliquefaciens FZB42] gi|154353630|gb|ABS75709.1| YwnA [Bacillus amyloliquefaciens FZB42] Length = 134 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R I +L + D IA + + + + + + L KAGI+ + G G Sbjct: 2 INSRLAVAIHILSLIST--DERASSDMIAGSVNTNPVVVRRTISQLKKAGILTSRAGVPG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118 L + +IT+L+V +A + + + DCP+ + + L + A Sbjct: 60 -ASLKKDPSEITLLEVYRAVQNREELFAVHDNPNPDCPVGKN--IQRALDETFGSVQRAM 116 Query: 119 FDVLTQYSIECLVRN 133 + L S+ ++ + Sbjct: 117 ENELASKSLYDVMNH 131 >gi|117164516|emb|CAJ88062.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 150 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + ++ + QIA + + + + ++L L KAG+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRRGHEVATSEQIATSANTNPVVIRRLLGELRKAGLVESRRGVGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF----FDVL 122 R + +T+LDV +A E A + +C + G+ ++ D L Sbjct: 70 ARELESMTLLDVYEAVEPGPLFAMHRTTPDQECVVGH--GIQPAMQNIYEGIEKTLRDEL 127 Query: 123 TQYSIECLVRN 133 + ++ ++R+ Sbjct: 128 ARVTLANVLRD 138 >gi|239627045|ref|ZP_04670076.1| RRF2 family protein [Clostridiales bacterium 1_7_47_FAA] gi|239517191|gb|EEQ57057.1| RRF2 family protein [Clostridiales bacterium 1_7_47FAA] Length = 147 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 13/138 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + +++LM + D I+E+ + + + ++ L KAGI+ GR Sbjct: 1 MRMSTQFTVTVQMLMMILVFKDKKMTSEMISESTGGNPIMVRQLFGKLKKAGILHVSTGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS--------VLR 112 G L R + I++ D+ A E + E F H + C + L Sbjct: 61 -GATVLARNPEDISLWDIYMAVEG-YDTNELFKFHP---RISEGCQIGRFFKEILGVHLD 115 Query: 113 KALNAFFDVLTQYSIECL 130 +A+ A + + S+ L Sbjct: 116 EAVQAMAEKMDAVSLAQL 133 >gi|296331295|ref|ZP_06873767.1| hypothetical protein BSU6633_09336 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676281|ref|YP_003867953.1| hypothetical protein BSUW23_18045 [Bacillus subtilis subsp. spizizenii str. W23] gi|296151410|gb|EFG92287.1| hypothetical protein BSU6633_09336 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414525|gb|ADM39644.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 133 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R I +L ++ D IA + + + + +++ L KA I+ + G G Sbjct: 2 INSRLSVAIHILSLISM--DEKESSETIAGSVNTNPVVVRRMISMLKKADILTSRAGVPG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118 L + I++L+V +A ++ + + +CP+ + + L + A Sbjct: 60 -ASLKKDPADISLLEVYRAVQKQDELFAIHENPNPNCPVGK--RIQNALDETFESVQKAM 116 Query: 119 FDVLTQYSIECLVRN 133 D L S++ ++ + Sbjct: 117 EDELASKSLKDVMNH 131 >gi|225572359|ref|ZP_03781223.1| hypothetical protein RUMHYD_00653 [Blautia hydrogenotrophica DSM 10507] gi|225040241|gb|EEG50487.1| hypothetical protein RUMHYD_00653 [Blautia hydrogenotrophica DSM 10507] Length = 157 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + L++ A + D +A + + + + IL L + V RG Sbjct: 1 MRLNTKYSIALHCLVFLAEYGDQMKVTSEVLARSTGCNPVIIRNILGALQRENFVTIARG 60 Query: 60 RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 GG L ++T+ V +A E CP+ L+ ++ Sbjct: 61 V-GGAHLNTDPKKLTVWQVYQAVEPEGLEHFMNLHPHPSGKCPVGRRIAEVLSHPYQQIE 119 Query: 116 NAFFDVLTQYSIECLVR 132 A + +++ L+ Sbjct: 120 EAIQQTMENITLQQLLD 136 >gi|237746415|ref|ZP_04576895.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377766|gb|EEO27857.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 144 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 12/146 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVE--TV 57 M + + Y ++++ A+ +D P ++ I+ IS L I + LV A ++E + Sbjct: 1 MRIATKERYALKMMADLAVASDSEPVSLTAISTRQNISVGSLRVIAEALVLASLIEADSH 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 R L + D+I + D+ ++T+ F C + +C C + L Sbjct: 61 RPYH--YHLAQQPDRIRLQDIFRSTDGRFACLACNDARPDECRRYRVCS-RVHFWEGLQE 117 Query: 118 F-----FDVLTQYSIEC-LVRNRSSI 137 ++ ++ L + ++ + Sbjct: 118 IDLPLHDANMSLKTLADYLTKRKTPL 143 >gi|223933381|ref|ZP_03625368.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis 89/1591] gi|302023354|ref|ZP_07248565.1| transcription regulation protein [Streptococcus suis 05HAS68] gi|330832158|ref|YP_004400983.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3] gi|223897948|gb|EEF64322.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis 89/1591] gi|329306381|gb|AEB80797.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis ST3] Length = 143 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +AE+ + ++ K++ L AG++ + +GR G Sbjct: 3 TKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGRSG-Y 60 Query: 65 RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + I++L++ AT+ E + + + + CP+ + + + Sbjct: 61 QLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLTCPVGQHIEGAMVPIFSSVEQDLEN 120 Query: 121 VLTQYSIECLVRN 133 L++ S++ ++ N Sbjct: 121 QLSRQSLDNVIDN 133 >gi|75760212|ref|ZP_00740268.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492298|gb|EAO55458.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 149 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 19/133 (14%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 20 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 79 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF-------- 119 ++ + + + T E + CP C + S +RK L A F Sbjct: 80 LGEVNLWHIYQITSEGALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLG 130 Query: 120 DVLTQYSIECLVR 132 + L Y+++ +V Sbjct: 131 EYLKNYTMKEVVD 143 >gi|218898464|ref|YP_002446875.1| rrf2 family protein [Bacillus cereus G9842] gi|218543993|gb|ACK96387.1| rrf2 family protein [Bacillus cereus G9842] Length = 137 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 19/133 (14%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF-------- 119 ++ + + + T E + CP C + S +RK L A F Sbjct: 68 LGEVNLWHIYQITSEGALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLG 118 Query: 120 DVLTQYSIECLVR 132 + L Y+++ +V Sbjct: 119 EYLKNYTMKEVVD 131 >gi|238855802|ref|ZP_04646094.1| rrf2 family protein [Lactobacillus jensenii 269-3] gi|260665236|ref|ZP_05866085.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|282933517|ref|ZP_06338889.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|313472788|ref|ZP_07813276.1| Rrf2 family protein [Lactobacillus jensenii 1153] gi|238831578|gb|EEQ23923.1| rrf2 family protein [Lactobacillus jensenii 269-3] gi|239529039|gb|EEQ68040.1| Rrf2 family protein [Lactobacillus jensenii 1153] gi|260560973|gb|EEX26948.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|281302363|gb|EFA94593.1| transcriptional regulator [Lactobacillus jensenii 208-1] Length = 150 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + +A + + ++ KIL L +GI+ + +G+ G Sbjct: 3 TKFAVALHILTMIS-EETSKLSSQTLANSVGTNASYIRKILALLKNSGIITSHQGKTG-Y 60 Query: 65 RLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFD 120 +L R +QI++L + A +ES + + CP+ + + + Sbjct: 61 QLTRLPEQISLLTIYLAIQESDHIHLFAVHQNANPKCPVGKYIESAMRPLFADIEVQLAE 120 Query: 121 VLTQYSIECLVRN 133 L + +++ ++ N Sbjct: 121 ALRRQTLKDVIDN 133 >gi|167755523|ref|ZP_02427650.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402] gi|167704462|gb|EDS19041.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402] Length = 167 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 4/132 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L TDY IR+++Y AI D + +++E I + +FKI + L I+ G + Sbjct: 38 QLKVSTDYAIRIVLYIAIKKD-IVQSKELSETLGIPQSTVFKIGKKLSDNEIISIATGIQ 96 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAFF 119 GG +L + I+I ++ E + + C K C +C + V F Sbjct: 97 GGFKLKKHPKDISIFSIIDIFEPTIRINSCLEEDKY-CSRFATETCPVRKVYCTMQKHFE 155 Query: 120 DVLTQYSIECLV 131 + L + I L+ Sbjct: 156 EYLKKIKILDLI 167 >gi|227510984|ref|ZP_03941033.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085726|gb|EEI21038.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 159 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + +L+ A+ D+ P + I+ +S+ +L K+L +V G++ + G Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89 + GG L +++T+LDV A E + Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGPSPII 90 >gi|196042814|ref|ZP_03110053.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225865368|ref|YP_002750746.1| rrf2 family protein [Bacillus cereus 03BB102] gi|196026298|gb|EDX64966.1| rrf2 family protein [Bacillus cereus 03BB108] gi|225790074|gb|ACO30291.1| rrf2 family protein [Bacillus cereus 03BB102] Length = 137 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 ++ + + + T E + +C S+ C + + L ++ A + L Y+ Sbjct: 68 LSEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 MKEVVD 131 >gi|49076390|gb|AAT49554.1| PA4169 [synthetic construct] Length = 143 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 11/136 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL + A H + P I + + + + + + L G V + +G R Sbjct: 6 RLSRM----LHVLTHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117 GG RL +P IT+LD+ +A S A ++ +C + + + L +A A Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118 Query: 118 FFDVLTQYSIECLVRN 133 + L ++E L Sbjct: 119 LLERLGSVTLEQLASE 134 >gi|182679823|ref|YP_001833969.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635706|gb|ACB96480.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica subsp. indica ATCC 9039] Length = 149 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 15/136 (11%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++R + + A+H P +A + L +LQ LV+A I++ VRG R Sbjct: 4 LSRRNLLALAAVTDIALHARPLPVAAKALASRLQLPPRHLETLLQALVRANILKGVRGPR 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-----TSVLRKALN 116 GG L R +IT D+++A + L+ CGL ++ +A Sbjct: 64 GGYELARERRRITAADILRAI---------LNEQDSENGLIQPCGLVEHVVGPLVEEAGK 114 Query: 117 AFFDVLTQYSIECLVR 132 AF L + +I+ R Sbjct: 115 AFVSELERLTIDDFCR 130 >gi|311070181|ref|YP_003975104.1| hypothetical protein BATR1942_16270 [Bacillus atrophaeus 1942] gi|310870698|gb|ADP34173.1| hypothetical protein BATR1942_16270 [Bacillus atrophaeus 1942] Length = 134 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R I +L ++ D IA++ + + + +++ L KA I+ + G G Sbjct: 2 INSRLAVAIHILSIISV--DEKASSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFD 120 L + I++L+V +A ++ + + CP+ C L A D Sbjct: 60 -ASLKKDPADISLLEVYRAVQKQEELFAVHDNPNPKCPVGKRIQCALDETFESVQKAMED 118 Query: 121 VLTQYSIECLVRN 133 L S+ ++ + Sbjct: 119 ELASKSLNDVMNH 131 >gi|319779902|ref|YP_004139378.1| hypothetical protein Mesci_0155 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165790|gb|ADV09328.1| protein of unknown function UPF0074 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 149 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 11/136 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + +L++ A + Q+A + + + + + L AGIV + RG Sbjct: 6 RLSST----LHILVHMAEKPEQALTSEQLATFIHTNPVVVRRTIAGLRDAGIVTSSRGHG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNA 117 GG L R ++I++ ++ A E+ C + + + +VL A Sbjct: 62 GGWLLGRVPEKISLAEISVALGETLLPFS-TEPESPGCLVEQA--VIAVLDDFRIAAERL 118 Query: 118 FFDVLTQYSIECLVRN 133 + L++ ++ L + Sbjct: 119 LAEKLSRITLADLTAD 134 >gi|291562312|emb|CBL41128.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing bacterium SS3/4] Length = 147 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 5/136 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG- 59 M R + +L + A++ D +++AE+ + ++ +++ L K G++ +V+G Sbjct: 1 MKYPTRLSDAVHILAFIALYPDCDLTSNKLAESIQTNPAYVRQLMSALRKGGLLVSVKGH 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 R L R ++IT+LD +A E + + C + + L Sbjct: 61 PR--PALAREPEKITLLDAYRAVEGNKPLLHQDIHTNPACGVGVNIQLVLRDFYLDIQKT 118 Query: 118 FFDVLTQYSIECLVRN 133 + + +++ ++ Sbjct: 119 AEQRMQEITLKDVLEQ 134 >gi|21221109|ref|NP_626888.1| hypothetical protein SCO2652 [Streptomyces coelicolor A3(2)] gi|6900951|emb|CAB71827.1| hypothetical protein SC8E4A.22 [Streptomyces coelicolor A3(2)] Length = 144 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L ++G+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRQGHEVATSEQIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122 R +T+LDV +A E A + C + G+ +R + L Sbjct: 70 ARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGH--GIQPAMRDVYEGIEETVRHEL 127 Query: 123 TQYSIECLVRN 133 + ++E ++RN Sbjct: 128 ARVTLEDVLRN 138 >gi|260587960|ref|ZP_05853873.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583] gi|331082470|ref|ZP_08331596.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541487|gb|EEX22056.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583] gi|330400956|gb|EGG80557.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T+ DYG+R++ A N + QI E ++ F++KIL+ L K IV++ RG Sbjct: 1 MLITRECDYGVRIIRALA--NGDKMCVHQICEQEDLTPAFVYKILKKLEKKEIVKSFRGS 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L ++T+LD+ A + F++ EC K CG + L + Sbjct: 59 NGGYALKSSVKELTLLDIYLAVDPEFYMIECMNPQKPCTHNQSDCGCAVHRELARVQQIL 118 Query: 119 FDVLTQYSIECLV 131 L +SI ++ Sbjct: 119 LTELKVHSIAEII 131 >gi|167006390|ref|YP_001661613.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1] gi|166162472|gb|ABY83593.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1] Length = 144 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L +AG+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122 R + +T+LDV +A E A A+ +C + G+ ++ + L Sbjct: 70 ARELESMTLLDVYEAVEPGPLFAMHRATPDPECVVGH--GIQPAMQSIYEGIEETVRHEL 127 Query: 123 TQYSIECLVRN 133 + ++ ++++ Sbjct: 128 ARVTLANVLQD 138 >gi|116334813|ref|YP_796340.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100160|gb|ABJ65309.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis ATCC 367] Length = 144 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 3/141 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L+Y I + IA + + + +++ + KAG++ + G Sbjct: 1 MKYSHKLSDAIHILVYVQIAPTGQLDSATIANSVEANPSVVRRLMAAMKKAGLLMSRAG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 RL RPA QIT+ V A E + + IDCP+ + L + A Sbjct: 60 TAEPRLARPASQITLQAVFHAVEMNHDLLHVDPQTNIDCPVGANIQQALDEAYARVQQAA 119 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 L + +++ +V +++ Sbjct: 120 EAELAKLTVQDIVDRVQGLRQ 140 >gi|294818112|ref|ZP_06776754.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces clavuligerus ATCC 27064] gi|294322927|gb|EFG05062.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces clavuligerus ATCC 27064] Length = 143 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + ++ + QIA + + + + ++L L + G+V++ RG G L Sbjct: 10 AAHALTWIGLYQRRGHEVATSEQIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWML 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFFDVL 122 R IT+LDV +A E A A+ +C + G+ VL A + A L Sbjct: 70 SRDLPTITLLDVYEAVETGPVFALHPAAPDPECVVGR--GIAPVLGAAYDGVEAALRAEL 127 Query: 123 TQYSIECLVRN 133 + ++E ++R+ Sbjct: 128 ARTTLEDVLRD 138 >gi|227523176|ref|ZP_03953225.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227089650|gb|EEI24962.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 159 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + + +L+ A+ D+ P + I+ +S+ +L K+L +V G++ + G Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89 + GG L +++T+LDV A E + Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGPSPII 90 >gi|254387868|ref|ZP_05003106.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064] gi|326446779|ref|ZP_08221513.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces clavuligerus ATCC 27064] gi|197701593|gb|EDY47405.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064] Length = 146 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + ++ + QIA + + + + ++L L + G+V++ RG G L Sbjct: 13 AAHALTWIGLYQRRGHEVATSEQIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWML 72 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFFDVL 122 R IT+LDV +A E A A+ +C + G+ VL A + A L Sbjct: 73 SRDLPTITLLDVYEAVETGPVFALHPAAPDPECVVGR--GIAPVLGAAYDGVEAALRAEL 130 Query: 123 TQYSIECLVRN 133 + ++E ++R+ Sbjct: 131 ARTTLEDVLRD 141 >gi|124514978|gb|EAY56489.1| putative transcriptional regulator, BadM/Rrf2 family [Leptospirillum rubarum] Length = 159 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + +AE+ + + +IL L KAG+V + +G+ GGV L + + I++L++ Sbjct: 42 KKGEWVNSAHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIF 101 Query: 80 KAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLV 131 +A EES F CP+ + + V R A L + + L+ Sbjct: 102 RAVGEESVFAFN-PNPPNPKCPVSVNMFRLIEPVFRAVGVALEKELDRIRLSDLI 155 >gi|330685745|gb|EGG97380.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis VCU121] Length = 158 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 9/150 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++K + GI VL+ A + ++E +S+ L KIL+ LV A ++ + Sbjct: 1 MKISKHFEQGIYVLLILATQEGQGAVKSQTLSEKLEVSDSSLKKILRKLVVADLITSNAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-------KIDCPLVGSCGLTSVLR 112 + GG +L R + IT+ DV++A + V E SH + L Sbjct: 61 KDGGFQLNRSIEDITLKDVIEAI-SNGDVIEYEISHLSRRIFFNDQHIKDSEMKVKQQLN 119 Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 A+ AF + L + + L+ + K+ + Sbjct: 120 YAIQAFNEKLNELPLVELLEDEYFKHKLVD 149 >gi|224477582|ref|YP_002635188.1| hypothetical protein Sca_2098 [Staphylococcus carnosus subsp. carnosus TM300] gi|222422189|emb|CAL29003.1| hypothetical protein SCA_2098 [Staphylococcus carnosus subsp. carnosus TM300] Length = 173 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + + L+ A + +AE+ + + + + + L A ++ RG Sbjct: 1 MRVSTQFPIAVHALLMIAYFPNIRVTSDMVAESVGKNPVIIRNVYKKLKDADLLTVQRGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G L RPA +IT+ D+ KA E + + + C + GS LT L++A++ Sbjct: 61 -GTTELIRPASKITLWDIYKAVETDQIDEIFKFPETLSGVCTVGGSIRELLTIHLQEAID 119 Query: 117 AFFDVLTQYSIECL 130 + L++ ++E L Sbjct: 120 ELKNALSKTTVEEL 133 >gi|308068789|ref|YP_003870394.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858068|gb|ADM69856.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 144 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ I L+ A S IA + + + + +I+ L +AG+V++ G RG Sbjct: 1 MSTHFSVSIHCLLLLAEGAPERMTSSLIASSINTNPVVVRRIMSRLKQAGLVDSSPGARG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120 RL + I + + +AT++ + +C + + L + A Sbjct: 61 -FRLSMSSSNINLKMIYEATKDEGPLFAIHTDSNHNCEVGRNIDALLDGLYTVAEQKIQA 119 Query: 121 VLTQYSIECL 130 ++ L Sbjct: 120 FFETVTLRDL 129 >gi|310641709|ref|YP_003946467.1| rrf2 family transcriptional regulator protein [Paenibacillus polymyxa SC2] gi|309246659|gb|ADO56226.1| Rrf2 family transcriptional regulator protein [Paenibacillus polymyxa SC2] Length = 144 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ I L+ A S IA + + + + +I+ L +AG+V++ G RG Sbjct: 1 MSTHFSVSIHCLLLLAEGAPERMTSSLIASSINTNPVVVRRIMSRLKQAGLVDSSPGARG 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120 RL + I + + +AT++ + +C + + L + A Sbjct: 61 -FRLSMSSSNINLKMIYEATKDEGPLFAIHTDSNHNCEVGRNIDALLDGLYTVAEQKIQA 119 Query: 121 VLTQYSIECL 130 ++ L Sbjct: 120 FFETVTLRDL 129 >gi|313109618|ref|ZP_07795565.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882067|gb|EFQ40661.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 142 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 11/136 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A H + P I + + + + + + L G V + +G R Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117 GG RL +P IT+LD+ +A S A ++ +C + + + L +A A Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118 Query: 118 FFDVLTQYSIECLVRN 133 L ++E L Sbjct: 119 LLGRLGSVTLEQLASE 134 >gi|118478673|ref|YP_895824.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118417898|gb|ABK86317.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis str. Al Hakam] Length = 137 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 ++ + + + T E + +C S+ C + + L ++ A + L Y+ Sbjct: 68 LSEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 MKEVVD 131 >gi|324993812|gb|EGC25731.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994867|gb|EGC26780.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK678] Length = 143 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +A + + ++ K++ L AG++ + +G+ G Sbjct: 3 TKFSVALHILTMISESRET-LSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGKSG-Y 60 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + ++++L++ AT+E + + + +CP+ + ++ + A Sbjct: 61 QLGKTPKKMSLLEIYYATQEVKRISLFQMHQNANQECPVGQNIQEAVSPIFASAEAQLEK 120 Query: 121 VLTQYSIECLVRN 133 L+ +++ ++ N Sbjct: 121 ALSHQTLDDVINN 133 >gi|116255261|ref|YP_771094.1| hypothetical protein pRL110061 [Rhizobium leguminosarum bv. viciae 3841] gi|115259909|emb|CAK03003.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 151 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + + + L + G V + +G Sbjct: 6 RLSRM----LHVLIHMDKHQ-HSATSDMIAKMLNTNPVVVRRTMAGLREQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L RP IT+LDV A E A A + C + + L +++A Sbjct: 61 GGWTLVRPLSDITLLDVYNAIGEPHLFAIGPADDQPQCLVEQAVNVALGDAMKEAQALLL 120 Query: 120 DVLTQYSIECLVRN 133 L +++ + + Sbjct: 121 RRLDSVTLDKIAAD 134 >gi|329767570|ref|ZP_08259091.1| hypothetical protein HMPREF0428_00788 [Gemella haemolysans M341] gi|328839197|gb|EGF88781.1| hypothetical protein HMPREF0428_00788 [Gemella haemolysans M341] Length = 167 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVVNDLVKANTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVL 111 GG + + ++T+ D+ A + + + + G+ L V Sbjct: 61 IGGGYK-YKSNKKVTLYDIYVALNDEVEIFA-LKTDYVSKIFEGALAVDKRYSKYLKKV- 117 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 A L + +IE LV + Sbjct: 118 NTVNKAIKASLEEITIENLVED 139 >gi|58337328|ref|YP_193913.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM] gi|58254645|gb|AAV42882.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM] Length = 153 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + K + VL+ A+ + P + +++ +S+ +L KIL L ++ Sbjct: 1 MKINKSVEQATYVLLILALQKKHTPLKSRVLSKTMGVSDSYLKKILMMLKHNELITASAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFAS--HKIDCPLVGSCGLTSVLRKA 114 ++ G +L RP D+I++ DV+ A E + D + + L+ Sbjct: 61 KKVGYQLARPIDEISLKDVLYALELNHNQIEFNHLANNIFDDQDHVEESENKIINTLQAG 120 Query: 115 LNAFFDVLTQYSIECLVRN 133 L++F+D L + + L+++ Sbjct: 121 LSSFYDELDELKLSDLLKD 139 >gi|89096880|ref|ZP_01169771.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088260|gb|EAR67370.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 141 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 18/134 (13%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ L+ A + + +++A+ FL KIL+ LVK G+V+ GR GG L +P Sbjct: 17 ALQALLIMADN-EGLCPSARLADKIGSESGFLRKILRNLVKEGLVQAKEGRDGGYFLAKP 75 Query: 70 ADQITILDVV---KATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 + I + DV +A E ECF C GL + + Sbjct: 76 PEDIRLSDVYAGMRA-EPFSKGFLDVSSKECFE----PCTRSALSGLK---NEMEQWILN 127 Query: 121 VLTQYSIECLVRNR 134 L + +++ L+ + Sbjct: 128 GLEEKTLKDLMGKK 141 >gi|317508384|ref|ZP_07966057.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974] gi|316253341|gb|EFV12738.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974] Length = 147 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 7/137 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ A + P +IA + + + + + L + G+V + +G GG L R Sbjct: 10 ALHTLLHLAS-KEEPMTSERIAAHLGTNAVVVRRTMAGLREHGLVASAKGHGGGWTLARS 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKALNAFFDVLTQYSI 127 +++T+ DV +A C + A ++ Sbjct: 69 LEKLTLFDVYRAVGSPNMFTMIRDEPDHPCMAARAVQTKLAESFDSAEALLLAAFGNITL 128 Query: 128 ----ECLVRNRSSIKKI 140 L + S + + Sbjct: 129 AALRADLAHDPQSDEGV 145 >gi|324327310|gb|ADY22570.1| rrf2 family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 137 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 ++ + + + T E + +C S+ C + + L ++ A L Y+ Sbjct: 68 LSEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGKYLKNYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 MKEVVD 131 >gi|227552744|ref|ZP_03982793.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257897331|ref|ZP_05676984.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|293378906|ref|ZP_06625061.1| transcriptional regulator [Enterococcus faecium PC4.1] gi|293572813|ref|ZP_06683767.1| transcription regulator [Enterococcus faecium E980] gi|227178144|gb|EEI59116.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257833896|gb|EEV60317.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|291607163|gb|EFF36531.1| transcription regulator [Enterococcus faecium E980] gi|292642447|gb|EFF60602.1| transcriptional regulator [Enterococcus faecium PC4.1] Length = 155 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I VL Y + D IA + + + KI+ L K+G++ T Sbjct: 1 MKYSLQFSD-AIHVLAYIEMFQDTRLLSSEMIASSIETNAANVRKIMSQLKKSGLILTKT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 G+ L + DQI++LDV ++ E + + + +C + + L + Sbjct: 60 GKP-QPSLAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + + + +++ L+ + ++K Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141 >gi|78063394|ref|YP_373302.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|77971279|gb|ABB12658.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] Length = 163 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA C + + + ++L L G V++ +G Sbjct: 23 RLSRM----LHALIHM-DQVDGPMTSEAIATMLCTNPVVVRRLLGGLRDRGYVQSEKGHG 77 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ + +C + + L++ L++A Sbjct: 78 GGWVLSVALDDITLLDVYRAVGEPPLFSDLVTDDEAECLVEQAVNAHLSATLKEAETTLL 137 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 138 ARFGEVTLGMLSRD 151 >gi|257888713|ref|ZP_05668366.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257824767|gb|EEV51699.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] Length = 155 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I VL Y + D IA + + + KI+ L K+G++ T Sbjct: 1 MKYSLQFSD-AIHVLAYIEMFQDTQLLSSEMIASSIETNAANVRKIMSQLKKSGLILTKT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 G+ L + DQI++LDV ++ E + + + +C + + L + Sbjct: 60 GKP-QPSLAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + + + +++ L+ + ++K Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141 >gi|257899894|ref|ZP_05679547.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|257837806|gb|EEV62880.1| conserved hypothetical protein [Enterococcus faecium Com15] Length = 155 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I VL Y + D IA + + + KI+ L K+G++ T Sbjct: 1 MKYSLQFSD-AIHVLAYIEMFQDTRLLSSEMIANSIETNAANVRKIMSQLKKSGLILTKT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116 G+ L + DQI++LDV ++ E + + + +C + + L + Sbjct: 60 GKP-QPSLAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118 Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139 + + + +++ L+ + ++K Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141 >gi|255534651|ref|YP_003095022.1| rrf2 family protein (putative transcriptional regulator) [Flavobacteriaceae bacterium 3519-10] gi|255340847|gb|ACU06960.1| rrf2 family protein (putative transcriptional regulator) [Flavobacteriaceae bacterium 3519-10] Length = 144 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGI+ +Y A + + + +A + F KILQ L + I+++VRG+ Sbjct: 2 FSKACEYGIKAAIYIAQQSQLNRTVNVKDVALSIDAPVAFTAKILQLLCREEILQSVRGK 61 Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG Q I D+V + +C C C + + + + F Sbjct: 62 QGGFFFSEEKQRQFRIYDLVTRIDGDGLFTQC-GLGLQRCSSENPCPVHNDFKIVRDRLF 120 Query: 120 DVLTQYSIECLV 131 ++ ++++ L Sbjct: 121 EMTSKHTFFDLA 132 >gi|255034872|ref|YP_003085493.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] gi|254947628|gb|ACT92328.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans DSM 18053] Length = 136 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 7 TDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + I +L A D +A + I+ + + K L L + G+V + G+ GG Sbjct: 4 GRFAISVHILTLLAFSEDEWTSSEYLAGSININPVLVRKELGNLRERGLVASKEGKSGGS 63 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVL 122 RL +PA QI + +V +A + + + S DCP+ + L + A L Sbjct: 64 RLAKPAGQIFMSEVYEAVRQKDLLGKGINSPNPDCPVGRKINDHLDGLYDAAEQTLLASL 123 Query: 123 TQYSIEC 129 + S+ Sbjct: 124 GKVSLAE 130 >gi|317496580|ref|ZP_07954929.1| transcriptional regulator [Gemella moribillum M424] gi|316913383|gb|EFV34880.1| transcriptional regulator [Gemella moribillum M424] Length = 167 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 8/140 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVLHDLVKANTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKA-- 114 GG + + ++++ D+ A + + + L L K Sbjct: 61 VGGGYK-YKANKKVSLYDIYVALNGEVEIFVLKTDYVSKIFEGALAVDKRYKKYLNKVNS 119 Query: 115 -LNAFFDVLTQYSIECLVRN 133 + L + +I+ LV + Sbjct: 120 INQSIKKSLEEITIDNLVED 139 >gi|91782956|ref|YP_558162.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686910|gb|ABE30110.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia xenovorans LB400] Length = 151 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R + IT+L+V +A +++ A C + + L ++ +A A Sbjct: 61 GGGALLARAPEHITLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120 Query: 119 FDVLTQYSIEC 129 L ++ Sbjct: 121 EASLGARTLAD 131 >gi|227543670|ref|ZP_03973719.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908730|ref|ZP_07126193.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227186354|gb|EEI66425.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894137|gb|EFK87495.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 150 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L Y ++ + IA++ + + +++ L AG++ T +G Sbjct: 1 MKYSYKLSDAVHLLSYLHVYQNGDLSSKAIADSIESNPSVVRQLMSDLRTAGLIVTRKGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118 RL + +I + D+ +A + + C + G+ L + A Sbjct: 61 A-EPRLAKKPREINLFDIYQAINMDHDLLHVDPKTNLKCIVGGNIQASLEKYYDQIQAAA 119 Query: 119 FDVLTQYSIECLVRN 133 F+ + Q S+ ++ + Sbjct: 120 FNEMKQISLADVIDD 134 >gi|88797874|ref|ZP_01113462.1| hypothetical protein MED297_12000 [Reinekea sp. MED297] gi|88779551|gb|EAR10738.1| hypothetical protein MED297_12000 [Reinekea sp. MED297] Length = 152 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L++ A D P ++A+ + + + + L + IV++ +G GG +L + Sbjct: 11 IHALLHLAAM-DKPATSERLAQMLQTNPAVVRRTMAGLRRMNIVQSSKGHNGGWQLQKSL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 D+IT+ D+ +A E A C V + + + + A + F L Q +++ Sbjct: 70 DEITLADLYEALETPQLFALTAGDEHPTCLVEQVANRSVQAAMTAASDVFLTHLRQVNLK 129 Query: 129 CL 130 L Sbjct: 130 QL 131 >gi|261885524|ref|ZP_06009563.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 123 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 P + I++ +S+ +L ++L L G V +++G +GG L + D+IT D+ Sbjct: 9 QKNPVSLKDISQNIGVSKNYLEQVLNTLRNTGFVSSIKGLKGGYFLNKTLDEITFYDIFY 68 Query: 81 ATEESFFVAECFASHK 96 A E F + H Sbjct: 69 ALENDFGLTSLNVEHS 84 >gi|28379895|ref|NP_786787.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|254558035|ref|YP_003064452.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300769029|ref|ZP_07078919.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308182109|ref|YP_003926237.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272736|emb|CAD65665.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|83778489|gb|ABC47132.1| putative transcriptional regulator [Lactobacillus plantarum] gi|254046962|gb|ACT63755.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|300493441|gb|EFK28619.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047600|gb|ADO00144.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 141 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T+ +D ++ Y A+H D + IA + + +++ L KAG++ +VRG Sbjct: 4 TQLSD-ATHIMAYIALHTDDQLKSEHIASSLNTDPTMVRRMMSKLRKAGLLTSVRGVA-R 61 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFF 119 L + IT+ D+ A + CP+ + V+ K N+ Sbjct: 62 PTLACSPNDITLKDIYVAVVAKRNFLNVDHNTSETCPVGSV--IPRVMEKYYCDIQNSAE 119 Query: 120 DVLTQYSIECLVRNRSSIKK 139 +++ +++ ++ + S++++ Sbjct: 120 ARMSRVTLQDIIDDISAVQQ 139 >gi|296448174|ref|ZP_06890072.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] gi|296254305|gb|EFH01434.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus trichosporium OB3b] Length = 148 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L + + + A+H+ P +A + L +LQ +V+AGI+++VRG Sbjct: 4 LPRSARLALMAALDVALHSRARPVSSRALAARHELPPRHLESMLQAMVRAGILKSVRGPS 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L + ++ + ++V+ + ++ + P + S + V +A Sbjct: 64 GGYELAKERRRLCVGEIVR-----VALRAEEEANGAESPRLLSSVIDPVFAEAERLALAR 118 Query: 122 LTQYSIECL 130 L + +++ L Sbjct: 119 LDEITLDSL 127 >gi|241889351|ref|ZP_04776652.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans ATCC 10379] gi|241863894|gb|EER68275.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans ATCC 10379] Length = 167 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVVNDLVKANTG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVL 111 GG + + ++T+ DV A + + + + G+ L V Sbjct: 61 IGGGYK-YKSNKKVTLYDVYVALNDEVEIFA-LKTDYVSKIFEGALAVDKRYSKYLKKV- 117 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 A L + +IE LV + Sbjct: 118 NTVNKAIKSSLEEITIENLVED 139 >gi|229826970|ref|ZP_04453039.1| hypothetical protein GCWU000182_02354 [Abiotrophia defectiva ATCC 49176] gi|229788588|gb|EEP24702.1| hypothetical protein GCWU000182_02354 [Abiotrophia defectiva ATCC 49176] Length = 146 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L+ + + P QIA + + ++ K+ L KA I+E RG G L + Sbjct: 8 AIHTLILIS-EAEVPMSSEQIAGSVGTNASYIRKLTTRLSKAEIIEGRRGVSG-FTLKKK 65 Query: 70 ADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125 +IT+LD+ KA E + + + C + + L+ + ++ L Sbjct: 66 PSEITLLDIYKAVMEVNEIHIFDIHQNSNDMCVVGQNIKPVLSGMFKEMEEQVEMQLKAM 125 Query: 126 SIE---CLVRNR 134 ++E +++N Sbjct: 126 TLENCMDIMKNN 137 >gi|304408505|ref|ZP_07390143.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304342512|gb|EFM08368.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 142 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 9/128 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACC-ISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 + L+Y A + +A+ S + + L K+G V T G GG RL Sbjct: 8 AVHSLVYLAYVPERMASSEALADNVGHASSSH-SQSDERLRKSGYVATREGAGGGYRLTA 66 Query: 69 PADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLT 123 +++++ D+ + + S + C ++DC + + + V+ A Sbjct: 67 EPNEVSLGDIYRVMAQGSLMPSWCSGDPEMDCVVGSN--MKQVMFGIFCTAEKRLETHFN 124 Query: 124 QYSIECLV 131 +I ++ Sbjct: 125 AITIRDVL 132 >gi|294791271|ref|ZP_06756428.1| Rrf2 family protein [Scardovia inopinata F0304] gi|294457742|gb|EFG26096.1| Rrf2 family protein [Scardovia inopinata F0304] Length = 150 Score = 83.5 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 11/149 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + + +++Y AI HN IA++ + + KI+ L KAG++ + RG Sbjct: 5 MKQSVQLSDSVHIMLYLAIKHNPDQLTSEAIAQSVNTNPSAVRKIMSNLKKAGLISSHRG 64 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----AL 115 + + RP IT+LD+ + + + + CP+ + + +VL + Sbjct: 65 KA-DPVIIRPLKDITLLDIFHSLPGTNDLLQPDRHTSRSCPVGAN--IQTVLNEKYHQIQ 121 Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNAG 144 D +++ +++ L I + G Sbjct: 122 LVIEDQMSRITLKELT---DEINGLIGEG 147 >gi|206562460|ref|YP_002233223.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198038500|emb|CAR54458.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 146 Score = 83.5 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ D P IA C + + + ++L L G V++ +G Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E ++ ++C + + L++ L++A + Sbjct: 61 GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDALECLVEQAVNAHLSATLKEAEASLL 120 Query: 120 DVLTQYSIECLVRN 133 + ++ L R+ Sbjct: 121 ARFGEVTLGMLSRD 134 >gi|294345242|emb|CBL51475.1| putative nitric oxide reductase regulator [Thermus thermophilus] Length = 141 Score = 83.5 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 + +IAE F+ K+LQ L KAG+VE+ GR+GGV P +I++L V++ Sbjct: 23 EEPGLSALEIAERLKAPPAFMAKVLQKLAKAGLVESRVGRKGGVWPKLPPGEISLLKVME 82 Query: 81 ATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 A + C + CP G C L L + L +++ L+ Sbjct: 83 ALSGPVVLDLCATLKR--CPTEERRGFCYLKPGLARTGLEIRKALAGLTLKDLLPENPP 139 >gi|256852121|ref|ZP_05557508.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260661309|ref|ZP_05862222.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|282933818|ref|ZP_06339168.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii 208-1] gi|297205002|ref|ZP_06922398.1| Rrf2 family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256615533|gb|EEU20723.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260547764|gb|EEX23741.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|281302060|gb|EFA94312.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149580|gb|EFH29877.1| Rrf2 family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 142 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 59/143 (41%), Gaps = 3/143 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I + IA + + + +++ L G++ET +G+ Sbjct: 1 MKYSYKFSDAIHLLSYLEIFKNGDLSSKAIAASIESNPSIIRQLMSDLRNVGLIETRQGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 +L R IT+ ++ A + + + CP+ + L + N+ Sbjct: 61 A-SAKLTRKPSAITLFEIYMAIDMDHELIHVDPQTNLKCPVGRNIQTSLNGFYEQIQNSA 119 Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141 F+ + +++ ++ + +K++ Sbjct: 120 FNQMKAITLQDVIDDILEKEKMY 142 >gi|217960811|ref|YP_002339375.1| rrf2 family protein [Bacillus cereus AH187] gi|217065699|gb|ACJ79949.1| rrf2 family protein [Bacillus cereus AH187] Length = 137 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ C+ + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 D++ + + + T E + +C S+ C + + L ++ A + L Y+ Sbjct: 68 LDEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 MKEVVD 131 >gi|209546345|ref|YP_002278235.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539202|gb|ACI59135.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 151 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + + + L + G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHQ-HSATSEMIAKMLNTNPVVVRRTMAGLRERGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L RP +IT+LDV A E A A + C + + L +++A Sbjct: 61 GGWTLVRPLWEITLLDVYNALGEPHLFAIGPADDQPKCLVEQAVNSVLQDAMKEAEALLL 120 Query: 120 DVLTQYSIECLVRN 133 L ++E + + Sbjct: 121 RRLGGVTLEEIAAD 134 >gi|159897735|ref|YP_001543982.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890774|gb|ABX03854.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon aurantiacus ATCC 23779] Length = 139 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 6/136 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVET 56 M + I + +Y + +IA+ I++ + K++Q L AG++ET Sbjct: 1 MSYSLAFSQAIAISLYITYKIEEQIYDFVPTHEIADFLGIAKPSVVKVVQSLTNAGLIET 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKA 114 G +GGVRL R + I +LD+ A E++ + + L + + L++A Sbjct: 61 REGAKGGVRLTRNSQAINLLDIFNAIEQAKPLFRLNIHPTEPKIEALAARQRMVASLQRA 120 Query: 115 LNAFFDVLTQYSIECL 130 A L ++ L Sbjct: 121 EAAMKQELQAVTLADL 136 >gi|296274609|ref|YP_003657240.1| BadM/Rrf2 family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296098783|gb|ADG94733.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter nitrofigilis DSM 7299] Length = 137 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + YG+ + + + P + +I+ I + +L ++L L AG+V + RG + Sbjct: 4 ISSKGVYGLAAMHELLQNEENKPMQSREISARADIPQSYLEQLLGKLKHAGLVLSTRGSK 63 Query: 62 GGVRLCRPA 70 GG L + Sbjct: 64 GGYMLAKDP 72 >gi|158422332|ref|YP_001523624.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329221|dbj|BAF86706.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 146 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 P +A + L +LQ LV AG+++ VRG RGG L R ++++ ++V+ Sbjct: 23 RGTPVAAKSLAARHGLPPRRLEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVR 82 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 E + E PLV + + A F L ++E L R Sbjct: 83 VVEGAEEEKEIILP-----PLVTE-VVQPAVAAAEQTFDTALDTVTLEDLCRAADQ 132 >gi|302557214|ref|ZP_07309556.1| transcriptional regulator superfamily protein [Streptomyces griseoflavus Tu4000] gi|302474832|gb|EFL37925.1| transcriptional regulator superfamily protein [Streptomyces griseoflavus Tu4000] Length = 144 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L +AG+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122 R + +T+LDV +A E A + C + G+ V++ + L Sbjct: 70 ARELESMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGH--GIQPVMQGIYEGIEETLRHEL 127 Query: 123 TQYSIECLVRN 133 + ++E ++R+ Sbjct: 128 ARVTLENVLRD 138 >gi|330718798|ref|ZP_08313398.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 131 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L Y AI+ ++ +QIA++ + + + +I+ L KA ++ + G+ Sbjct: 1 MKNSTKLSDAMHILTYIAINPNHDLSSTQIAQSVNSNPVVIRRIMSQLKKANLLLSENGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112 L + I++LDV A E + +CP+ + +VL Sbjct: 61 A-TPSLAHDSHNISMLDVYHAVENEPTFLKIDDQTNPNCPIGSQ--IKTVLD 109 >gi|148555080|ref|YP_001262662.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii RW1] gi|148500270|gb|ABQ68524.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii RW1] Length = 152 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D P +A+A + + +++ L + G+V + +G GG + RP Sbjct: 11 LHVLLHMAEQ-DGPVTSEVLAKAMDTHPVVVRRVMAGLREQGLVRSEKGHGGGWTIARPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 D IT+ D+ A +A + C + + L A + ++ Sbjct: 70 DGITLRDIYGALGGPSLLAMGHRTEAPGCLVEQAVNAALGRAFHDAEALLLARFGEVTLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 MLSAD 134 >gi|49478477|ref|YP_037503.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330033|gb|AAT60679.1| possible transcriptional regulator (rrf2 family protein) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 137 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLGLLKKHKFIQSKEGTGGGFIFARD 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 D++ + + + T E + +C S+ C + + L ++ A + L Y+ Sbjct: 68 LDEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEYLGEYLKNYT 125 Query: 127 IECLVR 132 ++ +V Sbjct: 126 MKEVVD 131 >gi|126736518|ref|ZP_01752259.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] gi|126714056|gb|EBA10926.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter sp. CCS2] Length = 124 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A + + + IA+ + + + ++L L +AG++ + +G GG RL R A IT+ Sbjct: 1 MAADSKHMRTSADIADHAGTNPVVVRRVLGKLREAGLLTSEKGHAGGWRLARAAQDITLA 60 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECL 130 DV A +E VA C + +T+V+ + + + L++ +I + Sbjct: 61 DVYLALDERL-VASSPNDDVPTCVVEHRLQNKITAVMEEIERSLIERLSKTNIAEV 115 >gi|145589828|ref|YP_001156425.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048234|gb|ABP34861.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 195 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 15/136 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +TK + L+ A H+ + +IA+ +S + +L+PL ++G+V ++ Sbjct: 1 MEVTKAVKVALNTLVDIASHSNKGQLVTVPEIAQRLNMSISRIELLLRPLRESGLVIGIK 60 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117 GR GG +L + ITI D+V A +KI V + L ++L A Sbjct: 61 GRTGGYQLSKDPRIITIKDIVLAM------------NKIKKRKVEVSDIAKDLYQSLEAY 108 Query: 118 FFDVLTQYSIECLVRN 133 + ++ ++ +++ Sbjct: 109 MMNCISNVTLASAIKD 124 >gi|90420066|ref|ZP_01227974.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335400|gb|EAS49150.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 155 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D P Q+A+A + + + +I+ L G+V + +G GG + + Sbjct: 11 LHVLLHMA-ETDGPVTSEQLAKAMQTNPVVIRRIMAGLRNQGLVRSTKGHGGGWTIAKEL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ D+ +A F A + C + + + +A + L + ++ Sbjct: 70 STVTLRDIYEALGSPEFFAMGNRTEAPGCLVEEAVNAAMDDTFARAEALLLERLGEVTLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALSAD 134 >gi|309777294|ref|ZP_07672256.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308914974|gb|EFP60752.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 138 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +++ + + P + S++++ +S+ +L KI++ LVKA IV ++ + Sbjct: 1 MRIRGSLEQAICIVLLIST-SSRPVKSSELSKKLDVSDSYLKKIMRQLVKANIVSSIASK 59 Query: 61 RGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 GG L R QIT LD+ A E S + + + + L A Sbjct: 60 TGGFVLLRSPSQITFLDLFNAIEGEEEFAVSTSLVDKVFDSRKQ-VKEKERQIMHYLYGA 118 Query: 115 LNAFFDVLTQYSIECLVRN 133 + L + +I+ ++ + Sbjct: 119 ELEYRKKLKEITIQQILTD 137 >gi|284029052|ref|YP_003378983.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808345|gb|ADB30184.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM 17836] Length = 144 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L +AG+VE+ RG G L Sbjct: 10 AAHTLAWIGLYQRQGHEVATSEQIAGSANTNPVVIRRLLGELREAGLVESRRGAGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124 R IT+LDV A E A A+ C + L V L++ Sbjct: 70 TRDLASITLLDVYDAIEPGPLFALHRANPDDGCVVGHGIQPALHDVYAGIECTVRTELSK 129 Query: 125 YSIECLVR 132 ++E +++ Sbjct: 130 TTLEDVLQ 137 >gi|296158734|ref|ZP_06841563.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] gi|295890939|gb|EFG70728.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. Ch1-1] Length = 151 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L +AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R + I++L+V +A +++ A C + + L ++ +A A Sbjct: 61 GGGALLARAPEHISLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120 Query: 119 FDVLTQYSIEC 129 L ++ Sbjct: 121 EASLGARTLAD 131 >gi|116333404|ref|YP_794931.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098751|gb|ABJ63900.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis ATCC 367] Length = 168 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 8 DYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + + ++ + I + P S +AE IS +L KI+Q L IV+TV GR GG+ L Sbjct: 8 EQALCIVAFLGIQDRQIPLHSSLVAERLGISTSYLKKIVQRLAAGKIVKTVSGRVGGIVL 67 Query: 67 CRPADQITILDVVKATEESFFVA 89 R IT+LD+ A E Sbjct: 68 TRNPHDITLLDIFDAIEGPQSFV 90 >gi|239947324|ref|ZP_04699077.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia endosymbiont of Ixodes scapularis] gi|239921600|gb|EER21624.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia endosymbiont of Ixodes scapularis] Length = 107 Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 I+ IS +L +I L KA +V+ +RG +GG L ++I I D++ A E+F + Sbjct: 18 ISVKQNISLNYLEQIFSKLKKADLVKAIRGLKGGYILIGNLEEIKISDIMDAVNENFIMT 77 Query: 90 ECFASHKIDC-PLVGSCGLTSVLR 112 C+ C P C + + Sbjct: 78 TCYKKSVKTCVPBTIKCNSHKLWK 101 >gi|255283024|ref|ZP_05347579.1| Rrf2 family protein [Bryantella formatexigens DSM 14469] gi|255266326|gb|EET59531.1| Rrf2 family protein [Bryantella formatexigens DSM 14469] Length = 150 Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 9/143 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T R I ++ A + + +A + + ++L L AG V+ G Sbjct: 1 MQITSRFTVAIHTMLCIAHYEGKKKMTSAALAGSTGADATIIRRLLGQLQTAGYVKVNAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114 GG L +P IT+LD+ +A + E+ + + + CP+ + + SVL + Sbjct: 61 V-GGAHLIKPLKDITLLDLFRAVDAETRNLFRFYENPDCVCPVGNN--IHSVLDGHLCEV 117 Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137 A ++ + + +++ L + Sbjct: 118 QQAMYNKMQEINLQTLYEEIEPL 140 >gi|329114382|ref|ZP_08243144.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001] gi|326696458|gb|EGE48137.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001] Length = 149 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 7/129 (5%) Query: 10 GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +++ A H + IAE ++ + +LQ L ++G++E++RG RGG RL Sbjct: 11 AVLIMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLG 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 RP I ++D+++A + A + ++ C K + + ++ Sbjct: 71 RPRRDIALVDIIEAVLNTDTDANDGPQGALFQKVLAPC-----WDKFDQKLITQMGKTTL 125 Query: 128 ECLVRNRSS 136 + LV+ S Sbjct: 126 DDLVKQAES 134 >gi|302387002|ref|YP_003822824.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302197630|gb|ADL05201.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 141 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56 M + T I +L+Y I+E I + KI+ L AGI++ Sbjct: 1 MAYSSATYQAISILIYIHYKIRAELYNYLSNRVISEQLNIPAPTVVKIMGKLKSAGIIDV 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKA 114 G +GG L +P IT+ DV A E + + +D + ++ L +A Sbjct: 61 REGMKGGNMLAKPLTDITLFDVFDAMERGNPMFKIHRGFHLDYDIFEGIVEKTINSLEEA 120 Query: 115 LNAFFDVLTQYSIECLV 131 A L + + L+ Sbjct: 121 EKAMITYLKKTRLSDLI 137 >gi|239813117|ref|YP_002942027.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus S110] gi|239799694|gb|ACS16761.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus S110] Length = 153 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A + P +A A + + +++ L +AG V + +G GG L P Sbjct: 11 LHALLHMA-EMEGPVTSESLAMAMQTHPVVVRRVMAGLREAGFVSSAKGHGGGWVLSCPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 D +T+ D+ +A +A + C + + L R+A + ++ Sbjct: 70 DAVTLGDIHQAVGSPALLAMGNRTESPGCIVEQAVNAALDGACREAEALLLERFNSITLA 129 Query: 129 CLVRN 133 L R+ Sbjct: 130 DLSRD 134 >gi|325696168|gb|EGD38059.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK160] gi|327460971|gb|EGF07304.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 160 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +A + + ++ K++ L AG++ + +G+ G Sbjct: 20 TKFSVALHILTMISESRET-LSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGKSG-Y 77 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + ++++L++ AT+E + + + +CP+ + ++ + A Sbjct: 78 QLGKIPKKMSLLEIYYATQEVKHISLFQMHQNANQECPVGQNIQEAVSPIFASAEAQLEK 137 Query: 121 VLTQYSIECLVRN 133 L +++ ++ N Sbjct: 138 ALRHQTLDDVINN 150 >gi|315185408|gb|EFU19180.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta thermophila DSM 6578] Length = 145 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +Y + L + + ++A + + E L KILQ L +AG++ V+G GG L Sbjct: 19 EYALIALAHLSRVRG-LVSSRELASSTGLPEARLRKILQRLGRAGVLRAVQGAHGGYVLE 77 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 R ++TI +V +A +E + C + C + C + Sbjct: 78 RSLSELTIGEVARALDERV-ILPC---GRDGCEVPEFCVMRP 115 >gi|332188880|ref|ZP_08390586.1| transcriptional regulator family protein [Sphingomonas sp. S17] gi|332011089|gb|EGI53188.1| transcriptional regulator family protein [Sphingomonas sp. S17] Length = 145 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L A H D P R IA + + + +L L AG+ + G RGG L RP+ + Sbjct: 1 MLALLADHGDMPLRSEDIAASVNSNAAVVRALLLRLASAGLTRSQLGNRGGAMLARPSSE 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECL 130 I ++DV A E+ F A + + P+ L ++L A + L +++ + Sbjct: 61 IRLVDVYHAVEDRNFFAFHRQPPEGESPIDRHITPSLEAMLTPVREALEEKLADLTLDDV 120 Query: 131 ---VRNRSSIKKI 140 +R R+ + +I Sbjct: 121 LTDIRARAGVSQI 133 >gi|224499981|ref|ZP_03668330.1| transcription regulator [Listeria monocytogenes Finland 1988] gi|254830570|ref|ZP_05235225.1| hypothetical protein Lmon1_04387 [Listeria monocytogenes 10403S] gi|255026916|ref|ZP_05298902.1| hypothetical protein LmonocytFSL_12321 [Listeria monocytogenes FSL J2-003] gi|284800722|ref|YP_003412587.1| hypothetical protein LM5578_0469 [Listeria monocytogenes 08-5578] gi|284993908|ref|YP_003415676.1| hypothetical protein LM5923_0468 [Listeria monocytogenes 08-5923] gi|284056284|gb|ADB67225.1| hypothetical protein LM5578_0469 [Listeria monocytogenes 08-5578] gi|284059375|gb|ADB70314.1| hypothetical protein LM5923_0468 [Listeria monocytogenes 08-5923] Length = 161 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 6/142 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + KI+ L KA ++ T Sbjct: 7 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKADLITTQT 65 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G+ L RP ++I++LDV K+ E + + DC + + LTS Sbjct: 66 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 124 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 125 KIEFEMEKIKLDSIVRDISVLE 146 >gi|294787028|ref|ZP_06752282.1| Rrf2 family protein [Parascardovia denticolens F0305] gi|315226673|ref|ZP_07868461.1| Rrf2 family transcriptional regulator [Parascardovia denticolens DSM 10105] gi|294485861|gb|EFG33495.1| Rrf2 family protein [Parascardovia denticolens F0305] gi|315120805|gb|EFT83937.1| Rrf2 family transcriptional regulator [Parascardovia denticolens DSM 10105] Length = 173 Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 ++ ++ P QIA + + ++ K+ L K GI+E R G R+ R + I Sbjct: 1 MLILISESEAPMNSDQIAASVGTNASYIRKLTTRLSKTGIIEGHRSVSG-FRMVRTPEDI 59 Query: 74 TILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIEC 129 T+LD+ ++ E + + + K C + + L+ + R + L ++ Sbjct: 60 TLLDIYRSVMETDELHLFDLHQNPKDACIVGHNIRPVLSGMFRDMEESMERRLRGKTLAD 119 >gi|238062427|ref|ZP_04607136.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884238|gb|EEP73066.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 141 Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 5/138 (3%) Query: 1 MHLTKRTDYGIRVL--MYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M R L + A H ++A + + + + + L L +AG+V Sbjct: 1 MAANSRVTIAAHALAWLELARRHGREVLTSEEVAASVNTNAVIVRRSLGDLQRAGLVRAR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 RG G L RPA +IT+LDV A +A + ++C + LT + +A Sbjct: 61 RGNGAGFSLGRPATEITLLDVWLAVSPEPLLALHHSEPNLECQVGRGIRPVLTDLYDEAT 120 Query: 116 NAFFDVLTQYSIECLVRN 133 N F L ++++ ++ Sbjct: 121 NTFRAALARWTVNDVLER 138 >gi|313677740|ref|YP_004055736.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa DSM 4126] gi|312944438|gb|ADR23628.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa DSM 4126] Length = 147 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++K++ Y I L++ + + P IS IAE I + FL IL L GI+ + +G+ Sbjct: 2 ISKKSKYAINALVHLGRKYGEGPTLISTIAEEESIPQKFLEAILLELKNDGILGSKKGKG 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117 GG L + + + + V++ + + + C F +C +C + K N Sbjct: 62 GGYYLRKDPETVNLAQVLRLFDGAIALLPCVTFKFYECCEECKDEETCSIREAFLKVRNE 121 Query: 118 FFDVLTQYSIECLVRNRSSI 137 + +++ L+ + Sbjct: 122 TVKIFKGQTLKGLLDREKKL 141 >gi|296124240|ref|YP_003632018.1| hypothetical protein Plim_4008 [Planctomyces limnophilus DSM 3776] gi|296016580|gb|ADG69819.1| protein of unknown function UPF0074 [Planctomyces limnophilus DSM 3776] Length = 187 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 5 KRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R VL Y A + ++ + + + ++L L KAG++ET RG Sbjct: 3 TRFTVAAHVLGYLAWQGEQGVEWVSSDELGRSINTHSVVVRRLLTQLQKAGLIETRRGAS 62 Query: 62 GGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 GG RL RPA I + +V A + ++ + +C + L V+ +A Sbjct: 63 GGSRLARPASAIHLGEVFDAVVESGTSLISFPREVERDECLVGEHIEAVLREVIAEAEAV 122 Query: 118 FFDVLTQYSIEC 129 F L + S+ Sbjct: 123 FRRNLGRTSVAE 134 >gi|258612017|ref|ZP_05711748.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293596338|ref|ZP_05230752.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|293596971|ref|ZP_05266116.2| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300766416|ref|ZP_07076372.1| hypothetical protein LMHG_12058 [Listeria monocytogenes FSL N1-017] gi|258607723|gb|EEW20331.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293584310|gb|EFF96342.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293594995|gb|EFG02756.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300512882|gb|EFK39973.1| hypothetical protein LMHG_12058 [Listeria monocytogenes FSL N1-017] Length = 182 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + KI+ L K+ ++ T Sbjct: 28 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 86 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L RP ++I++LDV K+ E + + DC + + + VL Sbjct: 87 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 143 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 144 QQKIEFEMEKIKLDSIVRDISVLE 167 >gi|126651648|ref|ZP_01723851.1| hypothetical protein BB14905_13585 [Bacillus sp. B14905] gi|126591597|gb|EAZ85703.1| hypothetical protein BB14905_13585 [Bacillus sp. B14905] Length = 134 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 5/126 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I VL + D +IA + + + + +I L KAGI+ + G G L R Sbjct: 9 AIHVLSLIST--DSTLSSEKIASSVNTNPVVIRRISSDLKKAGILTSKVGVPG-SSLTRD 65 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127 IT+ D+ KA + + DC + L A + L ++ Sbjct: 66 PSDITLFDIYKAVHLEKELFPIHNNPNPDCHVGKKIQHTLNVTFESVQTAMENELKNKTL 125 Query: 128 ECLVRN 133 E ++ + Sbjct: 126 ESVMNH 131 >gi|329847412|ref|ZP_08262440.1| transcriptional regulator family protein [Asticcacaulis biprosthecum C19] gi|328842475|gb|EGF92044.1| transcriptional regulator family protein [Asticcacaulis biprosthecum C19] Length = 151 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M ++R L Y A N + S +A + + + + ++ L KAG+V T Sbjct: 1 MSDSQRFPVAAHTLAYLAHRNAYSREAAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVAT 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114 G GG L + + I + +V++A + CP+ + + S ++ A Sbjct: 61 CSGVAGGAWLLKRPEDIRLDEVLRAVNGCAHLGS-APIGAEGCPVSQAIPKAVNSAMQLA 119 Query: 115 LNAFFDVLTQYSIECLVRN 133 A + L ++ L+R+ Sbjct: 120 NQAASEALATVTVADLLRH 138 >gi|325122781|gb|ADY82304.1| hypothetical protein BDGL_001718 [Acinetobacter calcoaceticus PHEA-2] Length = 138 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L++ A N +IA+ + + + + + L +A V++ +G GG L ++ Sbjct: 1 MLLHMARQN-RSFTSEEIAKMLSTNPVVIRRTMVGLKQANFVQSEKGPGGGWHLIGDIEK 59 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECL 130 IT+LD+ A E A +C + + L S ++ A L ++ L Sbjct: 60 ITLLDIYNAVGEPTIFAMGNERKNPECAVEQVVNAALDSSIQAAQAILIQRLKDTTLADL 119 Query: 131 VRNRSSI 137 R+ I Sbjct: 120 ARSFDQI 126 >gi|227890967|ref|ZP_04008772.1| transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227867376|gb|EEJ74797.1| transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 153 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ + ++IA + + + ++ L KAG++ G Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNGDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L +PA +I++LDV +A + + +C + + L +V ++ NA Sbjct: 61 A-KASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQDTLNNVYQRVQNAA 119 Query: 119 FDVLTQYSIECLVR 132 ++Q SI+ ++ Sbjct: 120 ELEMSQISIQDVID 133 >gi|313900567|ref|ZP_07834060.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2] gi|312954629|gb|EFR36304.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2] Length = 138 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +++ + + P + S++++ +S+ +L KI++ LVKA IV ++ + Sbjct: 1 MRIRGSLEQAICIVLLIST-SSRPVKSSELSKKLNVSDSYLKKIMRQLVKAKIVSSIASK 59 Query: 61 RGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 GG L + +IT LD+ A E S + + + + L A Sbjct: 60 NGGFVLLKTPSRITFLDLFNAIEGQEQFAVSTSLVDRVFDSRKQVKEKEE-KIMHYLHGA 118 Query: 115 LNAFFDVLTQYSIECLVRN 133 + L + +I+ ++ + Sbjct: 119 ELEYRKKLKEITIQQILSD 137 >gi|270290220|ref|ZP_06196445.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|270281001|gb|EFA26834.1| transcriptional regulator [Pediococcus acidilactici 7_4] Length = 143 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M + + +L Y + + I QI++ I L +++ L K+ + + Sbjct: 1 MAYSFGFSQSLEILFYIKLKTEMEEEKYLTIQQISKKTNIPIPSLKRLVGLLKKSDFLAS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TSV 110 +G GG+ L + AD+I + DV A E + + + + + + + Sbjct: 61 KKGLNGGLALAKSADRIRLYDVFTAIEGTTPLFKQYDNFDVSAFKHKKEVTYMLIESKKI 120 Query: 111 LRKALNAFFDVLTQYSIECL 130 A + D L + ++ L Sbjct: 121 FENAEQSMLDELKKKTLADL 140 >gi|307718275|ref|YP_003873807.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM 6192] gi|306532000|gb|ADN01534.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM 6192] Length = 145 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +Y + L + + ++A + + E L KILQ L +AG++ V+G GG L Sbjct: 19 EYALIALAHLSRVRG-LVSSRELASSTGLPEARLRKILQRLGRAGVLRAVQGVHGGYVLE 77 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 R ++TI +V +A +E + C + C + C + Sbjct: 78 RSLSELTIGEVARALDERV-ILPC---GRDGCEVPEFCVMRP 115 >gi|229043707|ref|ZP_04191411.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676] gi|228725635|gb|EEL76888.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676] Length = 114 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87 +AE+ + + + KI+ L +AG V RG GG L + +IT+LDV A E Sbjct: 1 MAESVNTNPVVIRKIMSYLKQAGFVYVNRGP-GGAGLLKDLHEITLLDVYHAVNVVEEDK 59 Query: 88 VAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130 + DCP+ + L +L +A +A +VL ++ L Sbjct: 60 LFHIHEQPNPDCPIGANIQAVLEIILIQAQSAMEEVLRNITMGQL 104 >gi|291287446|ref|YP_003504262.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] gi|290884606|gb|ADD68306.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio acetiphilus DSM 12809] Length = 141 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY IR+++Y A + I ++ +S + KI+ L G + T G+ GG+ + Sbjct: 10 DYAIRIIIYLAT-EGKMVKTKDICKSLYLSRPIVVKIINKLKSCGFLITKTGKEGGLTIA 68 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 ++ D+++ + + +C +HK C L+ C + + + + L Q I Sbjct: 69 EKIYDASLYDILQCMGFNSRMNQC-TTHKATCKLMPICSVNVLFCEIQQDIENRLKQAKI 127 Query: 128 EC-LVRNRSSIKKIFN 142 + L NR +K+ N Sbjct: 128 KEFLFENRD--RKLVN 141 >gi|47092552|ref|ZP_00230341.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|47019144|gb|EAL09888.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] Length = 210 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + KI+ L K+ ++ T Sbjct: 56 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 114 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L RP ++I++LDV K+ E + + DC + + + VL Sbjct: 115 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 171 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 172 QQKIEFEMEKIKLDSIVRDISVLE 195 >gi|227530014|ref|ZP_03960063.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227350046|gb|EEJ40337.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 111 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R I +L + + P IAE+ S + + +++ L AG+++TV G Sbjct: 1 MRISTRFSDSIHILAFIETYKGKLPLSSEHIAESIETSPVVVRRLMGKLRSAGLIKTVHG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108 +L R I++ DV A E+ + DC + G+ T Sbjct: 61 -SADPKLMREPKDISLYDVFLAVEDEQHLFAIDPKTNPDCIVGGNIQTT 108 >gi|167769781|ref|ZP_02441834.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM 17241] gi|167668142|gb|EDS12272.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM 17241] Length = 121 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 5/118 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +Q+ + I + F +KI++ L KA V RG GG RL + T+ D++ Sbjct: 3 EGEQVSAAQLCQRELIPQPFAYKIMRKLSKASFVSITRGADGGCRLAVDLREKTLYDLLF 62 Query: 81 ATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 A + FV C A C G CG+ + L A L +S+ ++ + Sbjct: 63 AMDSVEFVNACMAPG-YQCLWRERCGGKCGIHAQLESIQQAVDRELQSHSLASILSGK 119 >gi|310644495|ref|YP_003949254.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249446|gb|ADO59013.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 165 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ L+Y H + IA + + ++L LV+A ++ GR GG L R Sbjct: 18 ALKALVYLEKHGE-LCASGSIARSIDCEVTLVRRVLTRLVQADLIAAREGREGGYVLTRS 76 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSI 127 AD IT+ D+ A E + P G + ++ +L ++ +V +++ Sbjct: 77 ADHITLADIYHAIEICDPIFPGMMHEPETNPFCGELAIAVSEILAESERRMLEVWESHTL 136 Query: 128 ECLVRN 133 L + Sbjct: 137 ASLAKR 142 >gi|46906690|ref|YP_013079.1| hypothetical protein LMOf2365_0473 [Listeria monocytogenes serotype 4b str. F2365] gi|46879955|gb|AAT03256.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] Length = 155 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + KI+ L K+ ++ T Sbjct: 1 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L RP ++I++LDV K+ E + + DC + + + VL Sbjct: 60 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 116 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 117 QQKIEFEMEKIKLDSIVRDISVLE 140 >gi|304407103|ref|ZP_07388757.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] gi|304344090|gb|EFM09930.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus curdlanolyticus YK9] Length = 143 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I+ L+ A + ++ IA+ L KIL L +A ++ET GR GG RL RP Sbjct: 18 AIQALVVLASN-EHTCPSCTIADQLQSEATLLRKILATLARASLIETREGRDGGYRLLRP 76 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSI 127 A+QIT+ +V +A + S + P ++ S++ + + VL +++I Sbjct: 77 AEQITLAEVYQALQISEELGRSMEEATGSHPFGIMMQGVFASLVAELDESTMKVLEKHTI 136 Query: 128 ECLV 131 L+ Sbjct: 137 AELI 140 >gi|255521304|ref|ZP_05388541.1| hypothetical protein LmonocFSL_08780 [Listeria monocytogenes FSL J1-175] Length = 167 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + KI+ L K+ ++ T Sbjct: 13 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 71 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L RP ++I++LDV K+ E + + DC + + + VL Sbjct: 72 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 128 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 129 QQKIEFEMEKIKLDSIVRDISVLE 152 >gi|199597227|ref|ZP_03210659.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus rhamnosus HN001] gi|258508743|ref|YP_003171494.1| Rrf2 family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199592031|gb|EDZ00106.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus rhamnosus HN001] gi|257148670|emb|CAR87643.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus GG] gi|259650049|dbj|BAI42211.1| hypothetical protein [Lactobacillus rhamnosus GG] Length = 145 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 10/140 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M + + +L Y + I I+E I + +++ L G +E+ Sbjct: 1 MSYSVGFSQSLEILFYIELKTKYEEAKYLTIQAISEKLAIPVPSVKRLVALLKNKGFIES 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTS--V 110 +G GG+ L PA I DV +A E + + + + L S + Sbjct: 61 KKGVNGGLALAMPAKSIRFYDVFEAIEGDVKLFKQYDDFDTNTFIHRQEAEYMLLKSKEI 120 Query: 111 LRKALNAFFDVLTQYSIECL 130 A ++ L + ++ L Sbjct: 121 FDMAQSSMLKELKRRTLSEL 140 >gi|16799534|ref|NP_469802.1| hypothetical protein lin0458 [Listeria innocua Clip11262] gi|16412899|emb|CAC95690.1| lin0458 [Listeria innocua Clip11262] Length = 155 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 1 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L +P ++I++LDV K+ E + + DC + + + VL Sbjct: 60 GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + Q ++ +V + S ++ Sbjct: 117 QQKIELEMDQIKLDSIVHDISVLE 140 >gi|167569489|ref|ZP_02362363.1| Rrf2 family protein [Burkholderia oklahomensis C6786] Length = 152 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + L ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHALALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPSSITLLDVYRAVDDAQLFALHRETPNPACLVGRHIQGVLTDYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLADVTAD 135 >gi|116493495|ref|YP_805230.1| BadM/Rrf2 family transcriptional regulator [Pediococcus pentosaceus ATCC 25745] gi|116103645|gb|ABJ68788.1| transcriptional regulator, BadM/Rrf2 family [Pediococcus pentosaceus ATCC 25745] Length = 142 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 7/136 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ D IA++ + + ++ L AG++ T G Sbjct: 1 MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA----LN 116 L +I+ILDV KA + C + GS + VL A Sbjct: 60 SASPALNARPSEISILDVYKAVNMDHNLLHIDPKTNPQCVVGGS--IQDVLDDAYAEIQQ 117 Query: 117 AFFDVLTQYSIECLVR 132 + F + + +I + Sbjct: 118 SAFQKMDEITIADITE 133 >gi|254252764|ref|ZP_04946082.1| hypothetical protein BDAG_02004 [Burkholderia dolosa AUO158] gi|124895373|gb|EAY69253.1| hypothetical protein BDAG_02004 [Burkholderia dolosa AUO158] Length = 151 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMEEGVPLSSDVIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPHEITLLDVYRAVDDAQLFALHREAPNPACVVGRHIQGVLTDYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLADVTAD 135 >gi|226223067|ref|YP_002757174.1| hypothetical protein Lm4b_00463 [Listeria monocytogenes Clip81459] gi|225875529|emb|CAS04232.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467735|gb|EGF38787.1| hypothetical protein LM1816_01772 [Listeria monocytogenes 1816] gi|328475916|gb|EGF46640.1| hypothetical protein LM220_06157 [Listeria monocytogenes 220] gi|332310865|gb|EGJ23960.1| Transcription regulator [Listeria monocytogenes str. Scott A] Length = 161 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + KI+ L K+ ++ T Sbjct: 7 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 65 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L RP ++I++LDV K+ E + + DC + + + VL Sbjct: 66 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 122 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 123 QQKIEFEMEKIKLDSIVRDISVLE 146 >gi|262199394|ref|YP_003270603.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Haliangium ochraceum DSM 14365] gi|262082741|gb|ACY18710.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum DSM 14365] Length = 165 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A + P+ +A+ + + L +I+ L G V++ +G GG L Sbjct: 11 LHVLLHLA-QREGPSTSETLAKVMDTNPVVLRRIMAGLRDRGYVQSSKGHGGGWTLSCDI 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 IT+ DV A ++ S DC + + L V + ++ Sbjct: 70 AAITLGDVYDALGRPPLLSLRHRSEHPDCVVEAAVNDALGDVFDEVEALLLARFEDITLS 129 Query: 129 CL 130 L Sbjct: 130 AL 131 >gi|160899973|ref|YP_001565555.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365557|gb|ABX37170.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans SPH-1] Length = 161 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +D + VL++ A D P +A A + + L +++ L AG+V + +G GG Sbjct: 5 SQFSDV-LHVLLHMA-EGDGPATSDMLAAALQTNPVVLRRLMSGLRDAGLVTSAKGHGGG 62 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121 L D+ T+ DV +A VA F + +C + + L+ +++A A Sbjct: 63 WVLSCELDRTTLRDVHEALGAPGLVALGFREDRPECLVAQAVNEALSDAVQQAEAALLAR 122 Query: 122 LTQYSIECLVRN 133 L ++ L + Sbjct: 123 LGTVTLAALSHD 134 >gi|167562245|ref|ZP_02355161.1| Rrf2 family protein [Burkholderia oklahomensis EO147] Length = 152 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + L ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHALALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPSSITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLADVTAD 135 >gi|258611576|ref|ZP_05233618.2| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258601342|gb|EEW14667.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] Length = 182 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 28 MKYSIQFSD-AIHILTYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 86 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L +P ++I++LDV K+ E + + DC + + + VL Sbjct: 87 GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 143 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ ++ + S ++ Sbjct: 144 QQKIELEMDEIKLDSIIHDISVLE 167 >gi|306832073|ref|ZP_07465227.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425512|gb|EFM28630.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 146 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M + R + +L AIH N + +A + + + + +L L KAG+V+ Sbjct: 1 MSYSTRLATSVHIL--LAIHHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAGLVKVE 58 Query: 58 RGRRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSV----LR 112 G GG L + + +T+ D+ A E+S + + +C + + SV L Sbjct: 59 AGI-GGAHLTKQPEDLTLWDIFLAVEDSNKTIFKPHDDTNPNCEVGRV--VHSVLDPRLN 115 Query: 113 KALNAFFDVLTQYSIECLVRN 133 + N F L S+ L+ + Sbjct: 116 EIHNQFLQSLKTISLASLITD 136 >gi|255029797|ref|ZP_05301748.1| hypothetical protein LmonL_13364 [Listeria monocytogenes LO28] gi|332312785|gb|EGJ25880.1| Rrf2 family protein [Listeria monocytogenes str. Scott A] Length = 143 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%) Query: 22 DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D P I S ++ KIL+ LV +G++ +V G GG L + ++I +LD+V+ Sbjct: 10 DVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVE 69 Query: 81 ATEESF------FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 A E + S + G +TS R A + + L + LV Sbjct: 70 AVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFRNADKEYANYLYSQKLSVLVEQ 128 >gi|330990699|ref|ZP_08314655.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] gi|329762139|gb|EGG78627.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp. SXCC-1] Length = 79 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKAL 115 RGR GGV L RP I + VV+ E V + C C L +C L + R+A Sbjct: 3 TRGRNGGVSLARPPKDINVGHVVRLMETEGEVIKGCAPLQGRPCVLADACRLRHLARQAT 62 Query: 116 NAFFDVLTQYSIECLV 131 +AF VL S+ L+ Sbjct: 63 DAFMAVLDGMSVHDLL 78 >gi|126456922|ref|YP_001075296.1| transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167827792|ref|ZP_02459263.1| transcriptional regulator [Burkholderia pseudomallei 9] gi|217419315|ref|ZP_03450822.1| transcriptional regulator [Burkholderia pseudomallei 576] gi|242311392|ref|ZP_04810409.1| transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254190011|ref|ZP_04896520.1| transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|126230690|gb|ABN94103.1| transcriptional regulator [Burkholderia pseudomallei 1106a] gi|157937688|gb|EDO93358.1| transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|217398619|gb|EEC38634.1| transcriptional regulator [Burkholderia pseudomallei 576] gi|242134631|gb|EES21034.1| transcriptional regulator [Burkholderia pseudomallei 1106b] Length = 153 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + +T L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 AHFGAITVGDLARD 134 >gi|239926607|ref|ZP_04683560.1| hypothetical protein SghaA1_00120 [Streptomyces ghanaensis ATCC 14672] gi|291434916|ref|ZP_06574306.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291337811|gb|EFE64767.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L +AG+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124 R +T+LDV +A E A + C + + + L + Sbjct: 70 ARELGTMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGHGIQPAMQGIYEGIEETLRHELAR 129 Query: 125 YSIECLVRN 133 ++E ++R+ Sbjct: 130 VTLENVLRD 138 >gi|223985227|ref|ZP_03635311.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM 12042] gi|223962805|gb|EEF67233.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM 12042] Length = 156 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 14/139 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T I +Y A H + P ++A C + + KI+ L +AGI + G G Sbjct: 1 MTSELTVAIHAAVYLA-HKNAPQSSDELAVNICTHPVRVRKIMAALCRAGIAVSQEGSEG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119 G RLCR IT+ + +A + + E SC + S + + ++ + Sbjct: 60 GYRLCRSPQAITLRQIAEAL--NVALVESKWQSGDP---EMSCLVASGMAREMDKIYRSL 114 Query: 120 -----DVLTQYSIECLVRN 133 + L + ++ L+++ Sbjct: 115 NEQCLESLDRLTLWDLLQD 133 >gi|120435758|ref|YP_861444.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] gi|117577908|emb|CAL66377.1| Rrf2-like transcriptional regulator protein [Gramella forsetii KT0803] Length = 142 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%) Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +K +YGIR +Y A N + + +IA A E F KI+Q L K IV + +G Sbjct: 2 FSKACEYGIRATLYIAHQSQNGMRSNLGEIARAVNSPEAFTAKIMQKLSKNEIVASRKGP 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS---VLRKALNA 117 GG + P+ + ++ +V+A + C +C C L +R L Sbjct: 62 SGGFFI-DPSSKTKLIAIVQAIDGDLIYNGC-GLGLQECSESLPCPLHDQFIAIRGDLKK 119 Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140 + S+ + + + K+ Sbjct: 120 MLEHTEIMSLAGKLESNKTFLKL 142 >gi|206559473|ref|YP_002230234.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198035511|emb|CAR51390.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 151 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQSALTGYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 L ++ + + +++ Sbjct: 121 EASLATRTLADVTADMLDLEQ 141 >gi|121996942|ref|YP_001001729.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira halophila SL1] gi|121588347|gb|ABM60927.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira halophila SL1] Length = 176 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 12/140 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +T R Y + +++ A+H++ P +++I+ IS ++ +I L I+E + G Sbjct: 12 QVTARGRYAVGAVLHIALHDEIGPVPLAEISVCQNISTSYVDQIFADLRPHRIIEGIPGP 71 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL RPA ++T+ +++ A E L G+ V + + Sbjct: 72 GGGYRLARPASEVTVAEIIAAVERREA------GTTYRSALEGA-----VWSRLMADIAH 120 Query: 121 VLTQYSIECLVRNRSSIKKI 140 + + ++ LV ++ + + Sbjct: 121 FMERLTVADLVERPAAREWL 140 >gi|300775786|ref|ZP_07085647.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300505813|gb|EFK36950.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 136 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++ A +A + ++ + + K + L +AG++ + +G+ GG +L + Sbjct: 9 AVHIMTLLAKSPQEWLTSDWMAGSINVNPVIVRKEISVLREAGLIISRQGKEGGSQLAKN 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSI 127 AD ITI ++ KA + + + + + C + + ++ + + + L S+ Sbjct: 69 ADMITISEIYKAVKNTEVLGKKNQNPNPACSVGKEINIHLNTLFEETDHLVINFLGDKSL 128 Query: 128 ECLVRN 133 + Sbjct: 129 QEFTDQ 134 >gi|117920979|ref|YP_870171.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3] gi|117613311|gb|ABK48765.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3] Length = 137 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L++ ++AE + + + + + L G V + +G GG L +P Sbjct: 11 LHILVHLDAFATQ-LTSEKMAEMIGTNPVVVRRTMALLRDQGYVTSSKGHAGGWALAKPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIE 128 +IT+L++ +A +S F +CP+ + L V+++A + + +++ Sbjct: 70 AKITLLEIHQALGDSAFFTIGLTDEHNNCPIEIAVNDALKDVMQEAESLLLQRFGEITLD 129 Query: 129 CLV 131 L Sbjct: 130 KLA 132 >gi|222084619|ref|YP_002543148.1| hypothetical protein Arad_0566 [Agrobacterium radiobacter K84] gi|221722067|gb|ACM25223.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 152 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA + + + + + L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRH-EGAATSETIAAMLGTNAVVVRRTMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L +P +IT+LD+ A + A +C + + L + + Sbjct: 61 GGWVLAQPLREITLLDIHNALGAPQLFSIGLAGDNPNCVIEQAVNASLAEAMSEGEAILL 120 Query: 120 DVLTQYSIECLVRNRSS 136 + ++ L S Sbjct: 121 AKFAKVTLAALAEQSSE 137 >gi|307313736|ref|ZP_07593354.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|306899226|gb|EFN29863.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 135 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ + IA+ + + + + + L + GIV + GR GG R+ + A Sbjct: 10 LHVLVHMHLLGGGE-TSETIAKMLNTNPVVVRRTMAALKEKGIVTSAGGRSGGWRIAKGA 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128 D+IT+ V A + + + CP+ G+ L + A A +I+ Sbjct: 69 DEITVEQVHDALQTGSAFSIALSRDHSTCPVEGAVNTFLDQAMADAERALRTRFAGTTIQ 128 Query: 129 CLVR 132 L Sbjct: 129 DLAN 132 >gi|53721942|ref|YP_110927.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|167742245|ref|ZP_02415019.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167819422|ref|ZP_02451102.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|254192911|ref|ZP_04899346.1| transcriptional regulator [Burkholderia pseudomallei S13] gi|254264345|ref|ZP_04955210.1| transcriptional regulator [Burkholderia pseudomallei 1710a] gi|254300275|ref|ZP_04967721.1| transcriptional regulator [Burkholderia pseudomallei 406e] gi|52212356|emb|CAH38380.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|157810436|gb|EDO87606.1| transcriptional regulator [Burkholderia pseudomallei 406e] gi|169649665|gb|EDS82358.1| transcriptional regulator [Burkholderia pseudomallei S13] gi|254215347|gb|EET04732.1| transcriptional regulator [Burkholderia pseudomallei 1710a] Length = 153 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + + L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMREALGEAQALLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLARD 134 >gi|161525268|ref|YP_001580280.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349994|ref|YP_001945622.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221201430|ref|ZP_03574469.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans CGD2M] gi|221208015|ref|ZP_03581021.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans CGD2] gi|160342697|gb|ABX15783.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans ATCC 17616] gi|189334016|dbj|BAG43086.1| BadM/Rrf2 family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221172200|gb|EEE04641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans CGD2] gi|221178698|gb|EEE11106.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans CGD2M] Length = 151 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120 Query: 119 FDVLTQYSIECL 130 L ++ + Sbjct: 121 EASLASRTLADV 132 >gi|188990044|ref|YP_001902054.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. campestris str. B100] gi|167731804|emb|CAP49988.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. campestris] Length = 181 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 7/140 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A + P QIA + + + + + L +AG V++ +G Sbjct: 30 RLSRM----LHVLLHMA-RSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHH 84 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFF 119 GG +L R Q+T+LDV +A A C V + + L A Sbjct: 85 GGWQLARDLAQVTLLDVHRAVGGPHLFAIGTDQDHPQCGVERVVNAAIADALTAAETLLL 144 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + L ++ L + ++ K Sbjct: 145 ERLGTVTLADLASDFDALCK 164 >gi|330816101|ref|YP_004359806.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia gladioli BSR3] gi|327368494|gb|AEA59850.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia gladioli BSR3] Length = 146 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL A P IA + + + ++ L AGI + G Sbjct: 1 MNTSSRFAFAVHVLTLLAQQEGVPLSSEYIAGSVNTNPALIRRLTSMLAAAGITTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R IT+L+V +A ++ A + DC + LT + A A Sbjct: 61 GGGALLAREPGSITLLEVYRAVDDGQLFALHREAPNPDCLVGRHIQGVLTVYIDDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L + ++ ++ + Sbjct: 121 EASLARRTVADVMAD 135 >gi|194367667|ref|YP_002030277.1| BadM/Rrf2 family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350471|gb|ACF53594.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas maltophilia R551-3] Length = 151 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + V+ + H P Q+A + + ++L L +AG+V + RG GG L R Sbjct: 10 ALHVMAHLVGHA-APRTSEQLASCLPTHPVVIRRLLAQLHRAGLVRSTRGHGGGSVLARD 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125 A IT+ D+ A V CP+ + S L R+A L Sbjct: 69 AAAITLHDIYLAVGAPPLVQVGARDSGGGCPIQQ--LVNSALLEGAREAQRLLEQRLQAT 126 Query: 126 SIECL 130 +++ L Sbjct: 127 TLDQL 131 >gi|258612305|ref|ZP_05269685.2| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293596711|ref|ZP_05263693.2| conserved hypothetical protein [Listeria monocytogenes J2818] gi|258610600|gb|EEW23208.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293591694|gb|EFG00029.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 182 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 28 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 86 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L +P ++I++LDV K+ E + + DC + + + VL Sbjct: 87 GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 143 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ ++ + S ++ Sbjct: 144 QQKIELEMDEIKLDSIIHDISVLE 167 >gi|83719348|ref|YP_443374.1| Rrf2 family protein [Burkholderia thailandensis E264] gi|167582421|ref|ZP_02375295.1| Rrf2 family protein [Burkholderia thailandensis TXDOH] gi|167620514|ref|ZP_02389145.1| Rrf2 family protein [Burkholderia thailandensis Bt4] gi|257139623|ref|ZP_05587885.1| Rrf2 family protein [Burkholderia thailandensis E264] gi|83653173|gb|ABC37236.1| Rrf2 family protein [Burkholderia thailandensis E264] Length = 154 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPSRITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLADVTAD 135 >gi|21232974|ref|NP_638891.1| hypothetical protein XCC3545 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766953|ref|YP_241715.1| hypothetical protein XC_0614 [Xanthomonas campestris pv. campestris str. 8004] gi|21114816|gb|AAM42815.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572285|gb|AAY47695.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 157 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 7/140 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A + P QIA + + + + + L +AG V++ +G Sbjct: 6 RLSRM----LHVLLHMA-RSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHH 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFF 119 GG +L R Q+T+LDV +A A C V + + L A Sbjct: 61 GGWQLARDLAQVTLLDVHRAVGGPHLFAIGTDQDHPQCGVERVVNAAIADALTAAETLLL 120 Query: 120 DVLTQYSIECLVRNRSSIKK 139 + L ++ L + ++ K Sbjct: 121 ERLGTVTLADLASDFDALCK 140 >gi|213693040|ref|YP_002323626.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524501|gb|ACJ53248.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459218|dbj|BAJ69839.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 141 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 6/121 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H +AE C + + K+++PL AG++ T G GG L RP Sbjct: 8 AVHALVYL-DHRATHLPSHILAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A +IT+ V +AT +F ++ + C ++S + ++ + L + +E Sbjct: 67 AAEITLRAVAEATGTTF-----VEANWTPGDVQEDCLVSSSMGAVMDDIYAGLNRTCLEQ 121 Query: 130 L 130 L Sbjct: 122 L 122 >gi|15964112|ref|NP_384465.1| hypothetical protein SMc01160 [Sinorhizobium meliloti 1021] gi|307301257|ref|ZP_07581019.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] gi|307317928|ref|ZP_07597365.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|15073288|emb|CAC41796.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896330|gb|EFN27079.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti AK83] gi|306903713|gb|EFN34300.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti BL225C] Length = 152 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A ++A + + + + + L +AG+V + RG GG L R Sbjct: 11 LHALLHMAER--ETITSEELAACLSTNPVVVRRTMAGLREAGLVRSERGHGGGWSLVRDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 I++ DV A E A + C + + + LR A L + S+ Sbjct: 69 ATISLADVHAALGEPAVFAIGNRTEAPGCVVEQAVNAAMDGALRDAEALLMQRLERISLA 128 Query: 129 CLVRN 133 L + Sbjct: 129 DLSND 133 >gi|170747484|ref|YP_001753744.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654006|gb|ACB23061.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium radiotolerans JCM 2831] Length = 155 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A H D P I + + + + + L AG V++ +G Sbjct: 10 RLSRT----LHVLLHMARH-DGPMTSEAIGRMLGTNPVVVRRTMAGLRNAGYVKSEKGHG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119 GG + +++LDV +A A C + + LR+A Sbjct: 65 GGWTIAADLSAVSLLDVHRAVGGPRIFAIGSDRANPACAVEKVVNEAVEETLREAEALLI 124 Query: 120 DVLTQYSIECLVRN 133 L S+ L R+ Sbjct: 125 ARLGSVSLAELARS 138 >gi|321313211|ref|YP_004205498.1| hypothetical protein BSn5_09255 [Bacillus subtilis BSn5] gi|320019485|gb|ADV94471.1| hypothetical protein BSn5_09255 [Bacillus subtilis BSn5] Length = 133 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R I +L ++ D IA++ + + + +++ L KA ++ + G G Sbjct: 2 INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADLLTSRAGVPG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118 L + I++L+V +A ++ + + CP+ + + L + A Sbjct: 60 -ASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGK--KIQNALDETFESVQRAM 116 Query: 119 FDVLTQYSIECLVRN 133 + L S++ ++ + Sbjct: 117 ENELASKSLKDVMNH 131 >gi|221214010|ref|ZP_03586983.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans CGD1] gi|221166187|gb|EED98660.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia multivorans CGD1] Length = 151 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120 Query: 119 FDVLTQYSIECL 130 L ++ + Sbjct: 121 EASLASRTLADV 132 >gi|81428601|ref|YP_395601.1| hypothetical protein LSA0990 [Lactobacillus sakei subsp. sakei 23K] gi|78610243|emb|CAI55292.1| Hypothetical protein LCA_0990 [Lactobacillus sakei subsp. sakei 23K] Length = 144 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ D IA + + + +++ LVKA ++E+ G Sbjct: 1 MKYSHKLSDAIHILAYVEIYQDGDLSSQSIAGSIESNASLVRRLMSLLVKADLLESRPGT 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 +L RPA+QI++LDV +A + + C + + L + A Sbjct: 61 IA-PKLARPAEQISVLDVYQALDTDQQLLHIDEKTNPQCLVGANIQSALNDAYDQVQKAA 119 Query: 119 FDVLTQYSIECLVRN 133 D + Q + ++ + Sbjct: 120 EDQMAQIKLAGIIAD 134 >gi|313620490|gb|EFR91857.1| transcription regulator [Listeria innocua FSL S4-378] Length = 155 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 1 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L +P ++I++LDV K+ E + + DC + + + VL Sbjct: 60 GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ ++ + S ++ Sbjct: 117 QQKIELEMDEIKLDSIIHDISVLE 140 >gi|16080716|ref|NP_391544.1| hypothetical protein BSU36630 [Bacillus subtilis subsp. subtilis str. 168] gi|221311621|ref|ZP_03593468.1| hypothetical protein Bsubs1_19801 [Bacillus subtilis subsp. subtilis str. 168] gi|221315948|ref|ZP_03597753.1| hypothetical protein BsubsN3_19717 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320860|ref|ZP_03602154.1| hypothetical protein BsubsJ_19665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325145|ref|ZP_03606439.1| hypothetical protein BsubsS_19831 [Bacillus subtilis subsp. subtilis str. SMY] gi|81345681|sp|P71036|YWNA_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywnA gi|1592697|emb|CAA69860.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2636188|emb|CAB15680.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|291486238|dbj|BAI87313.1| hypothetical protein BSNT_05590 [Bacillus subtilis subsp. natto BEST195] Length = 133 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R I +L ++ D IA++ + + + +++ L KA I+ + G G Sbjct: 2 INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118 L + I++L+V +A ++ + + CP+ + + L + A Sbjct: 60 -ASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGK--KIQNALDETFESVQRAM 116 Query: 119 FDVLTQYSIECLVRN 133 + L S++ ++ + Sbjct: 117 ENELASKSLKDVMNH 131 >gi|76819017|ref|YP_337666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|76583490|gb|ABA52964.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] Length = 571 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 424 RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 478 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + + L +A Sbjct: 479 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMREALGEAQALLL 538 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 539 ARFGAITVGDLARD 552 >gi|296454824|ref|YP_003661968.1| BadM/Rrf2 family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184256|gb|ADH01138.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. longum JDM301] Length = 140 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H+ +AE C + + K+++PL AG++ T G GG L RP Sbjct: 8 AVHALVYL-DHHATHLPSQILAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A +IT+ V +AT +F + C ++S + +N + L + +E Sbjct: 67 AAEITLRAVAEATGTTFVKVNWTPGD-----VHEDCLVSSSMGAVMNDIYAGLNRTCLEQ 121 Query: 130 L 130 L Sbjct: 122 L 122 >gi|53718907|ref|YP_107893.1| hypothetical protein BPSL1272 [Burkholderia pseudomallei K96243] gi|53724208|ref|YP_103396.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|76811767|ref|YP_332909.1| Rrf2 family protein [Burkholderia pseudomallei 1710b] gi|121601481|ref|YP_992509.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|126442156|ref|YP_001058415.1| putative transcriptional regulator [Burkholderia pseudomallei 668] gi|126448208|ref|YP_001080027.1| Rrf2 family protein [Burkholderia mallei NCTC 10247] gi|126452517|ref|YP_001065649.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134283856|ref|ZP_01770553.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|167003976|ref|ZP_02269754.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|167737931|ref|ZP_02410705.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167815112|ref|ZP_02446792.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167823530|ref|ZP_02455001.1| putative transcriptional regulator [Burkholderia pseudomallei 9] gi|167893621|ref|ZP_02481023.1| putative transcriptional regulator [Burkholderia pseudomallei 7894] gi|167902069|ref|ZP_02489274.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC 13177] gi|167910306|ref|ZP_02497397.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|167918337|ref|ZP_02505428.1| putative transcriptional regulator [Burkholderia pseudomallei BCC215] gi|217423763|ref|ZP_03455264.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|226198599|ref|ZP_03794165.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] gi|237811658|ref|YP_002896109.1| Rrf2 family protein [Burkholderia pseudomallei MSHR346] gi|238563952|ref|ZP_00437973.2| Rrf2 family protein [Burkholderia mallei GB8 horse 4] gi|242316881|ref|ZP_04815897.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|254177742|ref|ZP_04884397.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|254180297|ref|ZP_04886896.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|254188276|ref|ZP_04894787.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|254198415|ref|ZP_04904837.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|254209429|ref|ZP_04915775.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|254260515|ref|ZP_04951569.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] gi|254358932|ref|ZP_04975205.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|52209321|emb|CAH35266.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52427631|gb|AAU48224.1| Rrf2 family protein [Burkholderia mallei ATCC 23344] gi|76581220|gb|ABA50695.1| Rrf2 family protein [Burkholderia pseudomallei 1710b] gi|121230291|gb|ABM52809.1| Rrf2 family protein [Burkholderia mallei SAVP1] gi|126221649|gb|ABN85155.1| putative transcriptional regulator [Burkholderia pseudomallei 668] gi|126226159|gb|ABN89699.1| putative transcriptional regulator [Burkholderia pseudomallei 1106a] gi|126241078|gb|ABO04171.1| Rrf2 family protein [Burkholderia mallei NCTC 10247] gi|134244844|gb|EBA44941.1| putative transcriptional regulator [Burkholderia pseudomallei 305] gi|147750202|gb|EDK57273.1| putative transcriptional regulator [Burkholderia mallei JHU] gi|148028059|gb|EDK86080.1| putative transcriptional regulator [Burkholderia mallei 2002721280] gi|157935955|gb|EDO91625.1| putative transcriptional regulator [Burkholderia pseudomallei Pasteur 52237] gi|160698781|gb|EDP88751.1| Rrf2 family protein [Burkholderia mallei ATCC 10399] gi|169655156|gb|EDS87849.1| putative transcriptional regulator [Burkholderia pseudomallei S13] gi|184210837|gb|EDU07880.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gi|217393621|gb|EEC33642.1| putative transcriptional regulator [Burkholderia pseudomallei 576] gi|225929342|gb|EEH25363.1| putative transcriptional regulator [Burkholderia pseudomallei Pakistan 9] gi|237506811|gb|ACQ99129.1| Rrf2 family protein [Burkholderia pseudomallei MSHR346] gi|238519606|gb|EEP83077.1| Rrf2 family protein [Burkholderia mallei GB8 horse 4] gi|242140120|gb|EES26522.1| putative transcriptional regulator [Burkholderia pseudomallei 1106b] gi|243060594|gb|EES42780.1| putative transcriptional regulator [Burkholderia mallei PRL-20] gi|254219204|gb|EET08588.1| putative transcriptional regulator [Burkholderia pseudomallei 1710a] Length = 153 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGVPLSSEVIAGSVNTNPALIRRLLSMLAAAGLTASQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPSRITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLADVTAD 135 >gi|313115924|ref|ZP_07801351.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621688|gb|EFQ05216.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 146 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG Sbjct: 4 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALNA 117 GG L D ++ D++ E + C +C G C + L Sbjct: 62 LGGCELSCDLDATSLYDLMVVVGERGILCACMEPG-YECRWHDKHGRCAIHCQLAALQQK 120 Query: 118 FFDVLTQYSIECLV 131 + S+ L+ Sbjct: 121 QDEAFRAVSLRRLL 134 >gi|47096459|ref|ZP_00234052.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|47015180|gb|EAL06120.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] Length = 155 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 1 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L +P ++I++LDV K+ E + + DC + + + VL Sbjct: 60 GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ ++ + S ++ Sbjct: 117 QQKIELEMDEIKLDSIIHDISVLE 140 >gi|126731918|ref|ZP_01747722.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37] gi|126707745|gb|EBA06807.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37] Length = 115 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 D P +IA + + + L L +AG++ + +G GG L RP +I++LD+ A Sbjct: 2 DRPATSEEIAAMLGTNATVVRRTLAGLREAGLLSSTKGHGGGWSLSRPLTEISLLDLYSA 61 Query: 82 TEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 A + C + L A F + L ++ +VR Sbjct: 62 LGSPELFAIAPDEAQPACLLARAANAATNDALHAAREVFEERLKALTVAEIVR 114 >gi|55670826|pdb|1XD7|A Chain A, Crsytal Structure Of A Putative Dna Binding Protein Length = 145 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + R I +L ++ D IA++ + + + +++ L KA I+ + G G Sbjct: 4 INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118 L + I++L+V +A ++ + + CP+ + + L + A Sbjct: 62 -ASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGK--KIQNALDETFESVQRAM 118 Query: 119 FDVLTQYSIECLVRN 133 + L S++ ++ + Sbjct: 119 ENELASKSLKDVMNH 133 >gi|322436026|ref|YP_004218238.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] gi|321163753|gb|ADW69458.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp. MP5ACTX9] Length = 124 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 13/128 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R +RVL A D + + IAEA S + + +I L KAG +E +G Sbjct: 1 MAQSGRFGLSVRVLGVLAAEPDAMHTSAAIAEAIGSSPVMVRRIFSALHKAGFIEQKKGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GG RL A I + D+ A E D + G L + ++K A + Sbjct: 61 AGGARLKHSAKSIGLGDLFVAIE-------------PDWLMSGEKALDAAMKKVRTAAVE 107 Query: 121 VLTQYSIE 128 + + SI Sbjct: 108 AMNETSIA 115 >gi|239833885|ref|ZP_04682213.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821948|gb|EEQ93517.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 167 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A H P +A+A + + + +++ L + G V + +G GG + Sbjct: 24 LHVLLHMAEHRG-PVTSEVLAKAMTTNPVVVRRVMGGLREQGYVRSEKGHGGGWEIACDL 82 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +++T+ D+ +A E +A + K +C + + L A N + + ++ Sbjct: 83 NKVTLRDIYEAIGEPTLLAMGNRAEKPECLVEQAVNASLGKAFSDAENLLLERFGEVTLA 142 Query: 129 CLVRN 133 L + Sbjct: 143 MLSAD 147 >gi|23466176|ref|NP_696779.1| hypothetical protein BL1627 [Bifidobacterium longum NCC2705] gi|227546522|ref|ZP_03976571.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621519|ref|ZP_04664550.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133920|ref|YP_004001259.1| transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317482172|ref|ZP_07941195.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA] gi|322689884|ref|YP_004209618.1| transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691825|ref|YP_004221395.1| transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326915|gb|AAN25415.1| hypothetical protein in upf0074 [Bifidobacterium longum NCC2705] gi|227213071|gb|EEI80950.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515394|gb|EEQ55261.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516431|emb|CBK70047.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum subsp. longum F8] gi|311773214|gb|ADQ02702.1| Putative transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916406|gb|EFV37805.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA] gi|320456681|dbj|BAJ67303.1| putative transcriptional regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461220|dbj|BAJ71840.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis 157F] Length = 140 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H +AE C + + K+++PL AG++ T G GG L RP Sbjct: 8 AVHALVYL-DHRATHLPSQILAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 A +IT+ V +AT +F + C ++S + +N + L + +E Sbjct: 67 AAEITLRAVAEATGTTFVKVNWTPGD-----VHEDCLVSSSMGAVMNDIYAGLNRTCLEQ 121 Query: 130 L 130 L Sbjct: 122 L 122 >gi|16802480|ref|NP_463965.1| hypothetical protein lmo0436 [Listeria monocytogenes EGD-e] gi|224502271|ref|ZP_03670578.1| hypothetical protein LmonFR_07074 [Listeria monocytogenes FSL R2-561] gi|254900618|ref|ZP_05260542.1| hypothetical protein LmonJ_12419 [Listeria monocytogenes J0161] gi|255016974|ref|ZP_05289100.1| hypothetical protein LmonF_02523 [Listeria monocytogenes FSL F2-515] gi|255029584|ref|ZP_05301535.1| hypothetical protein LmonL_11760 [Listeria monocytogenes LO28] gi|16409813|emb|CAC98515.1| lmo0436 [Listeria monocytogenes EGD-e] Length = 161 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 7 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 65 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L +P ++I++LDV K+ E + + DC + + + VL Sbjct: 66 GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 122 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ ++ + S ++ Sbjct: 123 QQKIELEMDEIKLDSIIHDISVLE 146 >gi|317406169|gb|EFV86423.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 148 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 7/141 (4%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A D P I + + + + +++ L + G V++ +G Sbjct: 6 RLSRM----LHVLLHMAEQ-DAPLTSETIGKMLNTNPVVVRRMMSGLRERGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L RP ++T+LDV +A E A + C + + GL + ++ Sbjct: 61 GGWVLTRPLAELTLLDVYQALGEPPIFALGLDQSEPKCLVEQAVNAGLEGAMAESRRLLL 120 Query: 120 DVLTQYSIECLVRNRSSIKKI 140 + ++ L R+ K+ Sbjct: 121 ERFATIRMDQLARDFQERLKL 141 >gi|53717100|ref|YP_105929.1| hypothetical protein BMAA1311 [Burkholderia mallei ATCC 23344] gi|124381671|ref|YP_001024383.1| transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126447815|ref|YP_001078192.1| transcriptional regulator [Burkholderia mallei NCTC 10247] gi|254174401|ref|ZP_04881063.1| transcriptional regulator [Burkholderia mallei ATCC 10399] gi|254356988|ref|ZP_04973263.1| transcriptional regulator [Burkholderia mallei 2002721280] gi|52423070|gb|AAU46640.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|124289691|gb|ABM98960.1| transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126240669|gb|ABO03781.1| transcriptional regulator [Burkholderia mallei NCTC 10247] gi|148026015|gb|EDK84138.1| transcriptional regulator [Burkholderia mallei 2002721280] gi|160695447|gb|EDP85417.1| transcriptional regulator [Burkholderia mallei ATCC 10399] Length = 153 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + +T L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLARD 134 >gi|318041251|ref|ZP_07973207.1| transcriptional regulator, BadM/Rrf2 family protein [Synechococcus sp. CB0101] Length = 148 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + ++ L+ A ++ IA A + L ++L L +AG+VE RGR GG Sbjct: 6 RSGQQALQALLELAEAPQQWRSVNDIAAAQALPAPMLEQLLLQLRRAGLVEARRGRLGGY 65 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 RL R I + +V+ A + E A L S+ R+ A L Q Sbjct: 66 RLQRQPAAIPVAEVLAAVGADIQLVEPDAPDSNQAEEQ---VLRSMARRLQRAMERELMQ 122 Query: 125 YSIECLVRNRSSIKKIFNA 143 +++E L+ + S ++ + Sbjct: 123 FNLEELLFDLRSCRETLSG 141 >gi|325979000|ref|YP_004288716.1| BadM/Rrf2 family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178928|emb|CBZ48972.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 146 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R + +L+ N + +A + + + + +L L KA +V+ G Sbjct: 1 MPYSARLATSVHILLAIYHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAELVKVEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVG--SCGLTSVLRKALN 116 GG L + ++T+ D+ +A E+ + + + +CP+ + L + + Sbjct: 61 V-GGAHLTKAPQELTLWDIFQAVEDTNKPIFKANDDTNPNCPVGRVVNSVLQPRIDEIQE 119 Query: 117 AFFDVLTQYSIECLVRN 133 F L ++ L+ + Sbjct: 120 NFKASLENITLASLITD 136 >gi|167723275|ref|ZP_02406511.1| transcriptional regulator [Burkholderia pseudomallei DM98] gi|167849266|ref|ZP_02474774.1| transcriptional regulator [Burkholderia pseudomallei B7210] gi|167897870|ref|ZP_02485272.1| transcriptional regulator [Burkholderia pseudomallei 7894] gi|167914532|ref|ZP_02501623.1| transcriptional regulator [Burkholderia pseudomallei 112] gi|167922427|ref|ZP_02509518.1| transcriptional regulator [Burkholderia pseudomallei BCC215] gi|237508735|ref|ZP_04521450.1| transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|235000940|gb|EEP50364.1| transcriptional regulator [Burkholderia pseudomallei MSHR346] Length = 153 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + +T L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLARD 134 >gi|90961949|ref|YP_535865.1| transcription regulator [Lactobacillus salivarius UCC118] gi|90821143|gb|ABD99782.1| Transcription regulator [Lactobacillus salivarius UCC118] Length = 153 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ + ++IA + + + ++ L KAG++ G Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNDDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L +PA +I++LDV +A + + +C + + L V ++ +A Sbjct: 61 A-RASLAKPASEISVLDVYRAITPTASLLHVDPKTNPNCVVGANIQNTLEEVYQRVQDAA 119 Query: 119 FDVLTQYSIECLVR 132 ++Q SI+ ++ Sbjct: 120 ELEMSQISIQDVID 133 >gi|308071262|ref|YP_003872867.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305860541|gb|ADM72329.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 157 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ L+Y H + IA + + ++L LV+A ++ GR GG L R Sbjct: 18 AVKALVYLEKHGE-LCASGSIARSIDCEVTLVRRVLTRLVQADLIAAREGREGGYVLTRS 76 Query: 70 ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 AD IT+ D+ A E + F + ++ +L ++ +V +++ Sbjct: 77 ADHITLADIYHAIEICDPIFPGMMHEPETNPFCEELAIAVSEILAESERRMLEVWGSHTL 136 Query: 128 ECLVRNRSSI 137 L NR+S+ Sbjct: 137 ASLA-NRTSL 145 >gi|325105184|ref|YP_004274838.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] gi|324974032|gb|ADY53016.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM 12145] Length = 136 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 IA + I+ + + K + L KAG+V++ G+ GG L + AD I + D+ KA A Sbjct: 29 IAGSININSVLVRKEITELRKAGLVDSKEGKNGGFFLAKKADDINLGDLFKAVYPESIFA 88 Query: 90 ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133 S +CP+ L S+ +A + L ++S+ + Sbjct: 89 FAKNSPNPNCPIGKDINKHLESLYVEAELSLVQELKRHSLAEFCQK 134 >gi|167906209|ref|ZP_02493414.1| transcriptional regulator [Burkholderia pseudomallei NCTC 13177] Length = 153 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + +T L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLARD 134 >gi|290892404|ref|ZP_06555398.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290557970|gb|EFD91490.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 182 Score = 79.2 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 6/142 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L K+ ++ T Sbjct: 28 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQT 86 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G+ L RP ++I++LDV K+ E + + DC + + LTS Sbjct: 87 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 145 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 146 KMELEMEKIKLDSIVRDISVLE 167 >gi|162147274|ref|YP_001601735.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209544320|ref|YP_002276549.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785851|emb|CAP55422.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531997|gb|ACI51934.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter diazotrophicus PAl 5] Length = 149 Score = 79.2 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Query: 10 GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +++ A H + IAE ++ + +LQ L ++ ++E+VRG RGG RL Sbjct: 11 AVLIMLDVAFHAGRSGTVSAADIAERAGLARRGIEPLLQTLSRSSLLESVRGPRGGYRLG 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 RP IT+ D+V+ ++ + ++ C +K + + ++ Sbjct: 71 RPRRDITLADIVEIATADDSSSDDGPVGALFTKVIEPC-----WQKLDDTLSTQCRKLTL 125 Query: 128 ECLVRNRSS 136 + LVR S Sbjct: 126 DDLVRRAES 134 >gi|226226357|ref|YP_002760463.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226089548|dbj|BAH37993.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 170 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A H + P+ +A A + + + +++ L G V + +G GG + Sbjct: 11 LHVLLHMAEH-EGPSTSESLARAMDTNPVVVRRVMAGLRDRGFVRSEKGPGGGWTIACDL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 ++T+ DV +A E +A S C + + L +A + ++ Sbjct: 70 RRVTLRDVYEALGEPRLLAIGNRSEAPQCLVEQAVNATLGDAFAEAEALLLQRFGEVTLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALSAD 134 >gi|152994406|ref|YP_001339241.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835330|gb|ABR69306.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1] Length = 152 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ D P +IA + + + + + L G V +V+G Sbjct: 10 RLSRM----LHVLIHM-NQLDAPATSEKIASMLNTNPVVVRRTMAGLRDKGYVSSVKGHG 64 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119 GG L IT+LD+ A ES + CP+ + ++ VL +A Sbjct: 65 GGWSLAISLSDITLLDIHNAIGESSVFTIGLSDEHTSCPIEIAVNQAISDVLIEAEALLL 124 Query: 120 DVLTQYSIECLV 131 + ++E L Sbjct: 125 ERFRDVTLEMLA 136 >gi|301299314|ref|ZP_07205599.1| transcriptional regulator [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853054|gb|EFK80653.1| transcriptional regulator [Lactobacillus salivarius ACS-116-V-Col5a] Length = 153 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ + ++IA + + + ++ L KAG++ G Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNDDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L +PA +I++LDV +A + + +C + + L V ++ NA Sbjct: 61 A-RASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQNRLEEVYQRVQNAA 119 Query: 119 FDVLTQYSIECLVR 132 ++Q SI+ ++ Sbjct: 120 ELEMSQISIQDVID 133 >gi|307569980|emb|CAR83159.1| transcriptional regulator, putative [Listeria monocytogenes L99] Length = 155 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I + S+I A + + + +I+ L K+ ++ T Sbjct: 1 MKYSIQFSD-AIHILAYIEIFKNTKLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G+ L RP ++I++LDV K+ E + + DC + + LTS Sbjct: 60 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 118 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 119 KMELEMEKIKLDSIVRDISVLE 140 >gi|291562340|emb|CBL41156.1| Predicted transcriptional regulator [butyrate-producing bacterium SS3/4] Length = 143 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG Sbjct: 1 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117 GG L D ++ D++ E + C +C G C + L Sbjct: 59 LGGCALSCDLDATSLYDLMGVVGERGILCACM-EPGYECRWQDKHGRCAIHCQLAALQQK 117 Query: 118 FFDVLTQYSIECLV 131 + S+ L+ Sbjct: 118 QDEAFRAVSLRRLL 131 >gi|301166543|emb|CBW26119.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 159 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + K+ +Y + L + +I + K++Q + I+ +V+G + Sbjct: 3 KVNKKVEYALMALKFMVEKGGELTSAREICDHFKTPFDTTAKVMQVMNSHDILSSVKGIK 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG + I+ L + + E + C ++K C L C + + + Sbjct: 63 GGYTINVDLSTISYLKLARIIEAKEVKSIC-QTNKGLCELHCDCNIVNPMSTLSEKLNQF 121 Query: 122 LTQYSIECLV 131 L SI+ L+ Sbjct: 122 LNSLSIQELL 131 >gi|149279571|ref|ZP_01885700.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp. BAL39] gi|149229607|gb|EDM34997.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp. BAL39] Length = 136 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L N +A + I+ + + K L L G V + G+ GG L + Sbjct: 9 SLHILTLLEKANGELMSSDYMAGSININPVIVRKELINLRNKGFVTSKEGKNGGSMLAKA 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSI 127 A QI++ +V A ++ + S CP+ ++ L + ++ Sbjct: 69 ASQISLDEVYLAVRQNNLLGSSKNSPNPLCPVGRQINTHLDTLYETTEQVLVRELAKKTL 128 Query: 128 ECLVRN 133 R Sbjct: 129 ADFSRE 134 >gi|146317979|ref|YP_001197691.1| hypothetical protein SSU05_0323 [Streptococcus suis 05ZYH33] gi|146320166|ref|YP_001199877.1| hypothetical protein SSU98_0319 [Streptococcus suis 98HAH33] gi|253751201|ref|YP_003024342.1| transcription regulation protein [Streptococcus suis SC84] gi|253753102|ref|YP_003026242.1| transcription regulation protein [Streptococcus suis P1/7] gi|145688785|gb|ABP89291.1| hypothetical protein SSU05_0323 [Streptococcus suis 05ZYH33] gi|145690972|gb|ABP91477.1| hypothetical protein SSU98_0319 [Streptococcus suis 98HAH33] gi|251815490|emb|CAZ51068.1| putative transcription regulation protein [Streptococcus suis SC84] gi|251819347|emb|CAR44720.1| putative transcription regulation protein [Streptococcus suis P1/7] gi|292557762|gb|ADE30763.1| hypothetical protein SSGZ1_0298 [Streptococcus suis GZ1] gi|319757471|gb|ADV69413.1| hypothetical protein SSUJS14_0308 [Streptococcus suis JS14] Length = 149 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + I L + + + +A + + + + +L L +AGIV+ +G Sbjct: 1 MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRSVLSGLKEAGIVDAKQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113 GG RL + D I++ D+ + + + + DC + G+ + + L + Sbjct: 61 -SGGFRLAKTLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCIVGGN--IHAAVDDKLVQ 117 Query: 114 ALNAFFDVLTQYSIEC-LVRNRSSIKK 139 A L + LV +I++ Sbjct: 118 VQTAMEKELKTMYMSDVLVDLEKAIEE 144 >gi|217965465|ref|YP_002351143.1| transcription regulator [Listeria monocytogenes HCC23] gi|217334735|gb|ACK40529.1| transcription regulator [Listeria monocytogenes HCC23] Length = 161 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I + S+I A + + + +I+ L K+ ++ T Sbjct: 7 MKYSIQFSD-AIHILAYIEIFKNTKLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQT 65 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G+ L RP ++I++LDV K+ E + + DC + + LTS Sbjct: 66 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 124 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 + + ++ +VR+ S ++ Sbjct: 125 KMELEMEKIKLDSIVRDISVLE 146 >gi|126442914|ref|YP_001062331.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126222405|gb|ABN85910.1| DNA-binding protein [Burkholderia pseudomallei 668] Length = 153 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + +T L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLARD 134 >gi|253754924|ref|YP_003028064.1| transcription regulation protein [Streptococcus suis BM407] gi|251817388|emb|CAZ55124.1| putative transcription regulation protein [Streptococcus suis BM407] Length = 149 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 11/147 (7%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ + I L + + + +A + + + + +L L +AGIV+ +G Sbjct: 1 MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRSVLSGLKEAGIVDAKQG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113 GG RL + D I++ D+ + + + + DC + G+ + + L + Sbjct: 61 -SGGFRLAKTLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCIVEGN--IHAAVDDKLVQ 117 Query: 114 ALNAFFDVLTQYSIEC-LVRNRSSIKK 139 A L + LV +I++ Sbjct: 118 VQTAMEKELKTMYMSDVLVDLEKAIEE 144 >gi|121596479|ref|YP_989904.1| transcriptional regulator [Burkholderia mallei SAVP1] gi|238561365|ref|ZP_00442000.2| transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|251767118|ref|ZP_02266036.2| transcriptional regulator [Burkholderia mallei PRL-20] gi|254200768|ref|ZP_04907133.1| transcriptional regulator [Burkholderia mallei FMH] gi|254204740|ref|ZP_04911093.1| transcriptional regulator [Burkholderia mallei JHU] gi|121224277|gb|ABM47808.1| transcriptional regulator [Burkholderia mallei SAVP1] gi|147748380|gb|EDK55455.1| transcriptional regulator [Burkholderia mallei FMH] gi|147754326|gb|EDK61390.1| transcriptional regulator [Burkholderia mallei JHU] gi|238524554|gb|EEP87986.1| transcriptional regulator [Burkholderia mallei GB8 horse 4] gi|243063862|gb|EES46048.1| transcriptional regulator [Burkholderia mallei PRL-20] Length = 172 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 25 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 79 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A E + + + DC + + +T L +A Sbjct: 80 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 139 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 140 ARFGAITVGDLARD 153 >gi|315651558|ref|ZP_07904578.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486213|gb|EFU76575.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 170 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + D ++ + + + + IL L KAG++ RG Sbjct: 29 MQISSRFTIALHIFTCVEYFKDREKITSDFLSGSISSNPVIIRNILSQLRKAGLITVARG 88 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113 GG+ + R +I+ D+ A E + + S CP+ + + +L K Sbjct: 89 -TGGIEITRDLSEISFYDIYMAVEAVKEEGLFHFHESPNPLCPVGKN--IHRLLDDKLVK 145 Query: 114 ALNAFFDVLTQYSIECL 130 A + + +Y++ + Sbjct: 146 IQEAMENKMKEYTLLDI 162 >gi|186476514|ref|YP_001857984.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum STM815] gi|184192973|gb|ACC70938.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum STM815] Length = 164 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 10/139 (7%) Query: 1 MHL--------TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 M + + R + + VL ++ P IA + + + + ++L L +AG Sbjct: 4 MRIGWSRAVNTSSRFAFAVHVLALLSLQEGVPLSSDLIAGSVNTNPVLIRRLLAMLAEAG 63 Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSV 110 + + G GG L R + IT+LD+ +A +++ A + C + + LT + Sbjct: 64 LTSSQLGAGGGALLARQPEDITLLDIYRAVDDAQLFAMHRETPNPACMVGRNIQTVLTGI 123 Query: 111 LRKALNAFFDVLTQYSIEC 129 + A A L ++ Sbjct: 124 IGDAQQALEASLASRTLAD 142 >gi|153006117|ref|YP_001380442.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029690|gb|ABS27458.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp. Fw109-5] Length = 173 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VLM+ A ++ P +AE + + + +++ + +AG V +GR GG + Sbjct: 11 LHVLMHMA-RSNGPFTSEHMAEMLGTNPVVVRRMMGAVREAGYVRAEKGRGGGWTIACDL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128 T+ DV +A A C + + L +R A L Q ++ Sbjct: 70 GTTTLRDVYQAVGSPTLFAIGSGGSNSSCAVERAVNGALRDAVRSAQELLLARLGQVTLA 129 Query: 129 CLVR 132 L Sbjct: 130 DLAA 133 >gi|331001950|ref|ZP_08325470.1| hypothetical protein HMPREF0491_00332 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411746|gb|EGG91151.1| hypothetical protein HMPREF0491_00332 [Lachnospiraceae oral taxon 107 str. F0167] Length = 142 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + + D ++ + + + + IL L KAG++ RG Sbjct: 1 MQISSRFTIALHIFTCVEYFKDREKITSDFLSGSISSNPVIIRNILSQLRKAGLITVARG 60 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113 GG+ + R +I+ D+ A E + + S CP+ + + +L K Sbjct: 61 -TGGIEITRDLSEISFYDIYMAVEAVKEEGLFHFHESPNPMCPVGKN--IHRLLDDKLVK 117 Query: 114 ALNAFFDVLTQYSIECL 130 A + + +Y++ + Sbjct: 118 IQEAMENKMKEYTLLDI 134 >gi|149924361|ref|ZP_01912728.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149814749|gb|EDM74321.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 120 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 IAE I +L +I+ L KAG V RG RGG RL +PA +I + DV+ Sbjct: 8 SAHVIAEQQGIPSRYLEEIIGELRKAGFVVGKRGPRGGYRLAKPASEIAVADVINVL 64 >gi|160942852|ref|ZP_02090092.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii M21/2] gi|158445904|gb|EDP22907.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii M21/2] Length = 146 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG Sbjct: 4 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117 GG L D ++ D++ E + C C G C + L Sbjct: 62 LGGCALSCDLDATSLYDLMGVVGERGILCACMEPG-YKCRWQDKHGRCAIHCQLAALQQK 120 Query: 118 FFDVLTQYSIECLV 131 + S+ L+ Sbjct: 121 QDEAFRAVSLRRLL 134 >gi|32472663|ref|NP_865657.1| hypothetical protein RB3680 [Rhodopirellula baltica SH 1] gi|32443900|emb|CAD73341.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 180 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L++ A D P +++ + + + +++ L + V +V+G GG L Sbjct: 34 LHILLHMA-ELDEPVTSDDLSKIMDTNPVVVRRLMAGLREQQYVLSVKGHGGGWTLACEL 92 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+LD+ +A +A + C + S L +A L + ++ Sbjct: 93 ADVTLLDIYEAVGSPRLLAMGNRTEAPGCLVEQSVNAALGKTFDEAEQRLLRRLGEVTLA 152 Query: 129 CLVRN 133 L + Sbjct: 153 SLSAD 157 >gi|107022281|ref|YP_620608.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689227|ref|YP_834850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892470|gb|ABF75635.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia AU 1054] gi|116647316|gb|ABK07957.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia HI2424] Length = 151 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 6/150 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120 Query: 119 FDVLTQYSI----ECLVRNRSSIKKIFNAG 144 L ++ ++ ++ AG Sbjct: 121 EASLATRTLVDVTADMLDREQRTQRAARAG 150 >gi|218462085|ref|ZP_03502176.1| putative transcriptional regulator protein [Rhizobium etli Kim 5] Length = 117 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%) Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----S 104 AGI++TV G RGG +L + ++I++LD++ A E C + P+ Sbjct: 3 AGILDTVPGPRGGYKLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKP 62 Query: 105 CGLTSVLRKALNAFFDVLTQYSIECL 130 C +++ + +A + L + SI L Sbjct: 63 CTISAAMLRAERVYRAELAKTSIADL 88 >gi|327470601|gb|EGF16057.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK330] Length = 160 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L + + +A + + ++ K++ L AG++ + +G+ G Sbjct: 20 TKFSVALHILTMISESRET-LSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGKSG-Y 77 Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120 +L + ++++L++ AT+E + + + +C + + ++ + A Sbjct: 78 QLGKTPKKMSLLEIYYATQEVKRISLFQMHQNANQECSVGQNIQEAVSPIFAIAEAQLEK 137 Query: 121 VLTQYSIECLVRN 133 L +++ ++ N Sbjct: 138 ALRHQTLDDVINN 150 >gi|329937551|ref|ZP_08287109.1| hypothetical protein SGM_2601 [Streptomyces griseoaurantiacus M045] gi|329303427|gb|EGG47314.1| hypothetical protein SGM_2601 [Streptomyces griseoaurantiacus M045] Length = 148 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 1 MHLTKRTDYGI--RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M + T + + VL Y A + + +P +++ + ++ +++ ++L PL +AG+V + Sbjct: 1 MARSTNTQFAVAVHVLTYLAGVTDGHPVSSEELSSSANVNAVYVRRVLGPLREAGLVRSR 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-N 116 G RGG L I + V + + V + L +A+ + Sbjct: 61 PGVRGGWELAGDPAGIPLAQVWSLLQGTDPVLGLHGPDPACATGRQVQKSLTTLDRAVAD 120 Query: 117 AFFDVLTQYSIECLV 131 + L ++++ ++ Sbjct: 121 SVTATLRRFTVRDVL 135 >gi|225619098|ref|YP_002720324.1| transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225213917|gb|ACN82651.1| Transcriptional regulator [Brachyspira hyodysenteriae WA1] Length = 115 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 5/110 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE- 83 S I+++ ++ + + IL L KA I+ RG GG+ L R + I +LD+ A E Sbjct: 1 MTSSLISDSVNVNPVIIRNILIQLQKADIITVKRG-TGGISLNRKIENINLLDIFNAVES 59 Query: 84 -ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130 ++ + + CP+ L L NA L + +++ + Sbjct: 60 LDNNKLFSFHENPNKKCPVGSRINDILQPKLDDVQNAMEKELKKTTLKDI 109 >gi|170732528|ref|YP_001764475.1| BadM/Rrf2 family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254245838|ref|ZP_04939159.1| hypothetical protein BCPG_00558 [Burkholderia cenocepacia PC184] gi|124870614|gb|EAY62330.1| hypothetical protein BCPG_00558 [Burkholderia cenocepacia PC184] gi|169815770|gb|ACA90353.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia cenocepacia MC0-3] Length = 151 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 6/150 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGMPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R +IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120 Query: 119 FDVLTQYSI----ECLVRNRSSIKKIFNAG 144 L ++ ++ ++ AG Sbjct: 121 EASLATRTLVDVTADMLDREQRTQRAARAG 150 >gi|295103291|emb|CBL00835.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii SL3/3] Length = 143 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG Sbjct: 1 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117 GG L D ++ D++ E + C +C G C + L Sbjct: 59 LGGCELSCDLDATSLYDLMGVVGERGILCACMEPG-YECRWQDKHGRCTIHCQLAALQQK 117 Query: 118 FFDVLTQYSIECLV 131 + S+ L+ Sbjct: 118 QDEAFRAVSLRRLL 131 >gi|288906031|ref|YP_003431253.1| hypothetical protein GALLO_1840 [Streptococcus gallolyticus UCN34] gi|306834188|ref|ZP_07467308.1| Rrf2 family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|288732757|emb|CBI14331.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304423761|gb|EFM26907.1| Rrf2 family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 146 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R + +L+ N + +A + + + + +L L KA +V+ G Sbjct: 1 MPYSARLATSVHILLAIYHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAELVKVEAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVG--SCGLTSVLRKALN 116 GG L + ++T D+ +A E+ + + + +CP+ + L + + Sbjct: 61 V-GGAHLTKAPQELTFWDIFQAVEDKNKPIFKANDDTNPNCPVGRVVNSVLQPRIDEVQE 119 Query: 117 AFFDVLTQYSIECLVRN 133 F L ++ L+ + Sbjct: 120 NFKASLENITLASLITD 136 >gi|300812053|ref|ZP_07092503.1| transcriptional regulator, Rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313122806|ref|YP_004033065.1| transcriptional regulator, badm/rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300496979|gb|EFK32051.1| transcriptional regulator, Rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279369|gb|ADQ60088.1| Transcriptional regulator, BadM/Rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 142 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L+Y I D IA + + + ++ L KAG+++T +G Sbjct: 1 MKFSHKLSDAVHLLVYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGLLKTKQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L + ++I++ D+ A + + CP+ G+ L + A Sbjct: 60 SAEPELAKKPEEISLYDIFAAVGMDHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 F + + S+ +V ++ Sbjct: 120 FAKMREISLREIVDQIKEDGQL 141 >gi|170702204|ref|ZP_02893109.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|172060143|ref|YP_001807795.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170132890|gb|EDT01313.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria IOP40-10] gi|171992660|gb|ACB63579.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MC40-6] Length = 151 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116 GG L R +IT+LDV +A +++ A + C + + VL A Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRH--IQGVLIDYIGDAQR 118 Query: 117 AFFDVLTQYSIECLVRN 133 A L ++ + + Sbjct: 119 AMEASLATRTLADVTAD 135 >gi|297163402|gb|ADI13114.1| hypothetical protein SBI_09996 [Streptomyces bingchenggensis BCW-1] Length = 144 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L + + QIA + + + + ++L L +AG+VE+ RG G L Sbjct: 10 AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSL 69 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124 R +T+LDV +A E A + C + + + L + Sbjct: 70 ARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGYGIQPAMQGIYEGIEETLRHELAR 129 Query: 125 YSIECLVRN 133 ++E ++R+ Sbjct: 130 VTLENVLRD 138 >gi|313625047|gb|EFR94927.1| BadM/Rrf2 family transcriptional regulator [Listeria innocua FSL J1-023] Length = 155 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 1 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQT 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G+ L +P ++I++LDV K+ E + + DC + + + VL Sbjct: 60 GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116 Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138 + + ++ ++ + S ++ Sbjct: 117 QQKLELEMDEIKLDSIIHDISVLE 140 >gi|300214658|gb|ADJ79074.1| Transcription regulator [Lactobacillus salivarius CECT 5713] Length = 153 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ + ++IA + + + ++ L KAG++ G Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNDDLSSTRIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L +PA +I++LDV +A + + +C + + L V ++ NA Sbjct: 61 A-RASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQNTLEEVYQRVQNAA 119 Query: 119 FDVLTQYSIECLVR 132 ++Q SI+ ++ Sbjct: 120 ELEMSQISIQDVID 133 >gi|296117471|ref|ZP_06836058.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295975992|gb|EFG82783.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 140 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 I +++ A H + IA+ ++ + +LQ L ++G++E++RG RGG RL Sbjct: 3 AILIMLDVAFHAGRNGTVSAADIADRANLARRGIEPLLQTLSRSGLLESIRGPRGGYRLG 62 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 RP I + D+++ + + ++ ++ C ++ + + ++ Sbjct: 63 RPRRDILLSDILEVVTADES-TDGGPTGQLFEKVIEPC-----WKELDDTVEKRCRKLTL 116 Query: 128 ECLVRNRS 135 + LV+ Sbjct: 117 DDLVKRAE 124 >gi|171322497|ref|ZP_02911294.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] gi|171092170|gb|EDT37571.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria MEX-5] Length = 151 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116 GG L R +IT+LDV +A +++ A + C + + VL A Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRH--IQGVLIDYIGDAQR 118 Query: 117 AFFDVLTQYSIECLVRN 133 A L ++ + + Sbjct: 119 AMEASLATRTLADVTAD 135 >gi|270261370|ref|ZP_06189643.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044854|gb|EFA17945.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 179 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A + + +A + F+ K++ PL K GI+ + GR G + L RP ++IT Sbjct: 34 VALAEKQGLRSTSAILAAGLEANPSFIRKLMVPLTKNGIIVSTLGRNGSIHLGRPVEEIT 93 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIEC 129 + D+ + + + C + +C SV+ +A A VL ++++ Sbjct: 94 LRDIYLSVIDDKRIWAARPEGPARCLVSANACWYFKSVVNEAEEASLAVLERHTVAD 150 >gi|315925641|ref|ZP_07921851.1| transcriptional regulator superfamily protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621182|gb|EFV01153.1| transcriptional regulator superfamily protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 152 Score = 78.1 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 7/135 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T++TDY IR+L A + +I +AE + F +KI + L +AGIV RG Sbjct: 1 MLITRKTDYAIRLLRGIA--DGGKKKIPVLAENEQVPRPFAYKITKKLQQAGIVAVGRGA 58 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKALN 116 GG L RP T+LD+++A ++ V C C C + + Sbjct: 59 AGGTSLNRPLAAFTLLDLLRALDDYPTVTAC-TRAPYHCDWCEHHRMACCAHQHMSQIQR 117 Query: 117 AFFDVLTQYSIECLV 131 L ++++ ++ Sbjct: 118 RLEAELAAHTLQAVI 132 >gi|167578112|ref|ZP_02370986.1| Transcriptional regulator family protein [Burkholderia thailandensis TXDOH] Length = 153 Score = 78.1 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D +T+LDV +A + + + + DC + + +T L +A Sbjct: 61 GGWELACELDAMTLLDVYRAIGQPPLFSIGSHADQPDCLVEKAVDARMTEALNEAETLLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGGITVGDLARD 134 >gi|325685122|gb|EGD27251.1| Rrf2 family transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 142 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L Y I D IA + + + ++ L KAG+++T +G Sbjct: 1 MKFSHKLSDAVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGLLKTKQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L + ++I++ D+ A + + CP+ G+ L + A Sbjct: 60 NAEPELAKKPEEISLYDIFAAVGMDHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 F + + S+ +V ++ Sbjct: 120 FAKMREISLREIVDQIKEEGQL 141 >gi|253574515|ref|ZP_04851856.1| LOW QUALITY PROTEIN: transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846220|gb|EES74227.1| LOW QUALITY PROTEIN: transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 135 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y D QIA + + K+L L + +V T G RGG L Sbjct: 8 AVHCLLYLDSKEDRMANSEQIACSVATHPARVRKVLSLLRRHDLVTTKEGARGGYLLKCE 67 Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 Q+T+ D+ + + S C S C + + + +V+ + Sbjct: 68 LSQVTLGDLYRIFAQGSLHPNWCSGSEHSSCNISSN--IPAVMNQI 111 >gi|308069350|ref|YP_003870955.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858629|gb|ADM70417.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 144 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + +L + + +IA + + + + +I+ L KAG +ET G Sbjct: 1 MKQISSRFSMAVHILSMITLDP-IYSTGDRIARSINSNPVVIRRIMAQLKKAGYIETKPG 59 Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 G L +++T+L++ +A E + + + +C + + L L A Sbjct: 60 VSGASLLI-SPERLTLLNIFQAVESVDGNQLFKIHKDADPNCSVGMNIESILLPQLSNAQ 118 Query: 116 NAFFDVLTQYSIECLVRN 133 A L ++ +V Sbjct: 119 KAMEHELASVTLAQIVEQ 136 >gi|159184929|ref|NP_354795.2| hypothetical protein Atu1813 [Agrobacterium tumefaciens str. C58] gi|159185848|ref|NP_356954.2| hypothetical protein Atu3663 [Agrobacterium tumefaciens str. C58] gi|159140208|gb|AAK87580.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] gi|159140982|gb|AAK89739.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 140 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ + +IA+ + + + + L L ++GIV + GR GG +L R Sbjct: 12 LHVLVHMGLLGGRE-TSERIAQMLNTNPVVVRRTLGALRESGIVVSEGGRGGGWKLIRSL 70 Query: 71 DQITILDVVKA-TEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSI 127 DQIT+LDV +A E A + +CP + L A A ++ ++ Sbjct: 71 DQITVLDVQRALVEGQMLPAP-LSKDHPNCPVERASNAVLERAHCLAEAALRTAYSETTL 129 Query: 128 ECLVR 132 + Sbjct: 130 AQIAE 134 >gi|154251426|ref|YP_001412250.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155376|gb|ABS62593.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum lavamentivorans DS-1] Length = 154 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ H D P +A A + + + +I+ L +AG V + +G GG + Sbjct: 11 LHVLLHMDAH-DAPMTSEVLAGAMQTNPVVIRRIMAGLREAGYVRSEKGHGGGWSIACDL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ D+ +A +A + C + + LT +A L ++ Sbjct: 70 KAVTLRDIHEALGGPSLLAIGNRTEAPGCLVEQAVNAALTQAFDEAEALLLKRLGGVTLA 129 Query: 129 CLVRN 133 L R+ Sbjct: 130 ALARD 134 >gi|157370170|ref|YP_001478159.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans 568] gi|157321934|gb|ABV41031.1| transcriptional regulator, BadM/Rrf2 family [Serratia proteamaculans 568] Length = 161 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A + + +A + F+ K++ PL K GI+ + GR G + L RPA+QIT Sbjct: 16 VAVAEKLGVRSTSAVLAAGLEANPSFIRKLMVPLTKNGIIVSTLGRNGSIHLGRPAEQIT 75 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIEC 129 + D+ + E + C + +C SV+ +A A +VL Y++ Sbjct: 76 LRDIYLSVIEDKRIWAARPEGPARCLVSANACWYFKSVVNEAEEASLNVLAGYTVAD 132 >gi|192360374|ref|YP_001984189.1| transcriptional regulator family [Cellvibrio japonicus Ueda107] gi|190686539|gb|ACE84217.1| Transcriptional regulator family [Cellvibrio japonicus Ueda107] Length = 166 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L++ A + P +A+ + + + ++L L + G+V + +G GG L R Sbjct: 11 LHILLHMA-EAELPMTSDALAKMMKTNPVVIRRMLAGLREQGLVCSEKGHGGGWTLGREL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 I++ D+ A +E +A + C + + L + +A + Q S+ Sbjct: 70 ASISLYDIYSALDEPTLLAMGNRTESPGCLVEQAVNSALNNTFGEAEALLLNCFRQVSLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 QLSAD 134 >gi|332185085|ref|ZP_08386834.1| transcriptional regulator family protein [Sphingomonas sp. S17] gi|332014809|gb|EGI56865.1| transcriptional regulator family protein [Sphingomonas sp. S17] Length = 143 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A H + P IA + + + + + L G V +G GG + +P Sbjct: 11 LHVLLHMARH-ERPMTSEAIARMLGTNPVVVRRTMAGLRDVGYVGPEKGHGGGWEIAQPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128 + +LDV +A A + DC + + L LR A L S+ Sbjct: 70 QSVCLLDVHRAVGGPRLFAIGHENAHADCAVEKAVNTALDDALRDAETLLVARLDAISLA 129 Query: 129 CLVRN 133 L R+ Sbjct: 130 ELARD 134 >gi|149183666|ref|ZP_01862080.1| YrzC [Bacillus sp. SG-1] gi|148848614|gb|EDL62850.1| YrzC [Bacillus sp. SG-1] Length = 83 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 ++RG GG L QIT D+++ E E + + + Sbjct: 1 SIRGAYGGYVLGNEPSQITAGDIIRILEGPISPVEGIEDEEP--------AKRELWMRIR 52 Query: 116 NAFFDVLTQYSIECLV 131 +A +VL +IE L Sbjct: 53 DAVKEVLDNTTIEDLA 68 >gi|134295230|ref|YP_001118965.1| BadM/Rrf2 family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138387|gb|ABO54130.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia vietnamiensis G4] Length = 146 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ + P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQDGVPLSSEIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116 GG L R I++LDV +A +++ A + C + + VL A Sbjct: 61 GGGALLAREPGDISLLDVYRAVDDAQLFALHREAPNPACMVGRH--IQGVLIDYIGDAQR 118 Query: 117 AFFDVLTQYSIECLVRN 133 A L ++ + + Sbjct: 119 AMEASLATRTLADVTAD 135 >gi|307327145|ref|ZP_07606334.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] gi|306887226|gb|EFN18223.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces violaceusniger Tu 4113] Length = 149 Score = 77.7 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +++++ A+ + P +++A + + K+L PL + G+V V+GR GG L Sbjct: 9 ALQLMLLLAVAAEDDGAPLSSAELARMLNTNPSLVRKLLVPLAEEGLVVCVKGRTGGAML 68 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 RP D+IT+ ++ + + C + C + G ++ +A A D L Sbjct: 69 GRPTDRITLAEIYRCAVGDKPLWACSPGVEPVCQVTAHAGEYFAALTAEAEEAVLDSLGD 128 Query: 125 YSIECLVRNRSSI 137 ++ VR + Sbjct: 129 RTLADSVRELRRL 141 >gi|213971257|ref|ZP_03399374.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383893|ref|ZP_07232311.1| hypothetical protein PsyrptM_14720 [Pseudomonas syringae pv. tomato Max13] gi|302063596|ref|ZP_07255137.1| hypothetical protein PsyrptK_26743 [Pseudomonas syringae pv. tomato K40] gi|302131005|ref|ZP_07256995.1| hypothetical protein PsyrptN_06391 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924010|gb|EEB57588.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 148 Score = 77.7 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + L A+ + P R +A + + + +L L AG+ + G Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPA++I +LDV +A E++ + + C + G+ L L +A A Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDTELFSSHRMAPCEQCAVGGNILEALAPTLGRARTAL 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 D L + ++ + + + K Sbjct: 121 EDELAKVTVADIAAEVARLGK 141 >gi|330994153|ref|ZP_08318081.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter sp. SXCC-1] gi|329758620|gb|EGG75136.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter sp. SXCC-1] Length = 148 Score = 77.7 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 18/137 (13%) Query: 6 RTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 RT I +++ A H + IAE ++ + +LQ L ++G++E+VRG RGG Sbjct: 7 RTMIAILIMLDVAFHAGRNGTISAADIAERAGLARRGIEPLLQTLSRSGLLESVRGPRGG 66 Query: 64 VRLCRPADQITILDVVKAT-----EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 RL RP I + D++ + V + F+ C ++ + Sbjct: 67 YRLGRPRRDILLADILSVITAEDNRDDGPVGDLFSKVVEPC-----------WQQFDSMI 115 Query: 119 FDVLTQYSIECLVRNRS 135 + S++ LVR Sbjct: 116 DAECHKISLDDLVRRAE 132 >gi|28869602|ref|NP_792221.1| hypothetical protein PSPTO_2406 [Pseudomonas syringae pv. tomato str. DC3000] gi|28852844|gb|AAO55916.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|331018967|gb|EGH99023.1| hypothetical protein PLA106_23258 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 148 Score = 77.7 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + L A+ + P R +A + + + +L L AG+ + G Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPA++I +LDV +A E++ + + C + G+ L L +A A Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDTELFSSHRVAPCEQCAVGGNILEALAPTLGRARTAL 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 D L + ++ + + + K Sbjct: 121 EDELAKVTVADIAAEVARLGK 141 >gi|325525923|gb|EGD03623.1| putative transcriptional regulator [Burkholderia sp. TJI49] Length = 158 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L R +IT+LD+ +A +++ A + C + L + A A Sbjct: 61 GGGALLAREPGEITLLDIYRAVDDAQLFALHREAPNPACLVGRHIQGALIGYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLADVTAD 135 >gi|169335460|ref|ZP_02862653.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM 17244] gi|169258198|gb|EDS72164.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM 17244] Length = 141 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-RRGGVRLCR 68 + L++ H +I+E CI+ KIL L KAG+V+T G +GG Sbjct: 8 SVHALVFLNHHYKEFKTSEEISENICINPARARKILSKLKKAGLVKTREGSVKGGYSFVL 67 Query: 69 PADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125 A IT+LDV +A + + ++C + G + V + + L + Sbjct: 68 NAANITLLDVYEAIGNKVVDISWRSGNVNMECLIASGMGDIMDGVYERLDEVCKEELNKI 127 Query: 126 SIECL 130 +I+ + Sbjct: 128 TIKDI 132 >gi|257064536|ref|YP_003144208.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792189|gb|ACV22859.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 152 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L+ P +QIAE+ + ++ ++ L AGI+ + GR G L P Sbjct: 9 AVHLLI-LVSEAQTPMSSAQIAESIGTNPSWVRRLATALRGAGIIASRPGRTG-FVLAVP 66 Query: 70 ADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125 AD++T+LDV +A +E+ V + + C + + + A L Sbjct: 67 ADELTLLDVYRAACGQETVRVFDAHRNPSDKCIVGRHIRPVIGDLFADVDEAAMRALEGR 126 Query: 126 SIEC 129 ++ Sbjct: 127 TLAD 130 >gi|228927217|ref|ZP_04090280.1| hypothetical protein bthur0010_19300 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832543|gb|EEM78117.1| hypothetical protein bthur0010_19300 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 153 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 54/135 (40%), Gaps = 3/135 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L + L+Y Q+++ C++ + + K+++ L K G++ T G Sbjct: 16 QLNSEFIIAVHCLVYLNHVPGNMATSEQLSDNLCVNAVRIRKVMRMLKKKGLISTKEGFT 75 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCG--LTSVLRKALNAF 118 GG ++T+ + + T + + + H + DC + G +T + + + Sbjct: 76 GGYIFKHNPKEVTLGQIYELTSNNSLASNWRSGHIEKDCVISSGIGQVMTDIFSEGDQCY 135 Query: 119 FDVLTQYSIECLVRN 133 L +++ +V Sbjct: 136 KLFLDGINVQDVVEK 150 >gi|254524248|ref|ZP_05136303.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp. SKA14] gi|219721839|gb|EED40364.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp. SKA14] Length = 151 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + V+ + + P Q+A + + ++L L KAG+V + RG GG +L R Sbjct: 10 ALHVMAHLVGQS-APRTSEQLASCLPTHPVVIRRLLAQLHKAGLVHSARGHGGGSQLARD 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125 A IT+ D+ A V CP+ + S L R+A L Sbjct: 69 AATITLHDIYLAVGAPPLVQVGTRGSGGGCPIQQ--LVNSALLEGAREAQRLLEQRLQAA 126 Query: 126 SIECL 130 +++ L Sbjct: 127 TLDQL 131 >gi|167621798|ref|YP_001676583.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167351539|gb|ABZ74269.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 142 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++R + L+Y A P R ++A + S + + ++ LVKAG++ + Sbjct: 1 MSESQRFPTAVHALVYLAHSKATPHQPVRSVELACSVNASHVGVRRVTARLVKAGLIGSQ 60 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL----TSVLRK 113 GR+GG L ++IT+ V++A + + + L + + + Sbjct: 61 DGRKGGAWLRADPERITLDQVLEAVAGPVRL----GATPPSWADEPAGSLGTAIVAAIAQ 116 Query: 114 ALNAFFDVLTQYSIECLVR 132 A A L++ SI LV Sbjct: 117 AEAAMLQRLSKISIADLVD 135 >gi|134101553|ref|YP_001107214.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914176|emb|CAM04289.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora erythraea NRRL 2338] Length = 146 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 10 GIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 ++V+++ A+ + + +Q+A + + K+L PL G+V +GR GG RL Sbjct: 8 ALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAGGARL 67 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 RPAD+IT+ ++ + + C + C + ++ +A A L Sbjct: 68 GRPADRITLAEIYRCAVGDKPLWACSPKAEQVCLVTAHAAEYFAALTAEAEQAVLASLGD 127 Query: 125 YSIECLVRNRSSI 137 ++ V S+ Sbjct: 128 RTLAESVGELRSL 140 >gi|227515093|ref|ZP_03945142.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086541|gb|EEI21853.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 120 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R I +L + ++ + ++ + IS + + +++ L +AG+V+T +G Sbjct: 7 MRASTRFSDAIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 65 Query: 61 RGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 RL R +IT+ DV A E + C + G + +L + Sbjct: 66 TAQPRLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPQCKVGGH--IQPILAEV 120 >gi|330820621|ref|YP_004349483.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] gi|327372616|gb|AEA63971.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli BSR3] Length = 148 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + L++ + P IA C + + + ++L L AG V++ +G Sbjct: 6 RLSRM----LHALIHM-NRAEGPLTSEAIAAMLCTNAVVVRRLLGGLRDAGYVQSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG L D IT+LDV +A E +E + C Sbjct: 61 GGWTLAVSLDAITLLDVYRAVGEPPLFSELVSEDDPQC 98 >gi|291008165|ref|ZP_06566138.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 150 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 10 GIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 ++V+++ A+ + + +Q+A + + K+L PL G+V +GR GG RL Sbjct: 12 ALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAGGARL 71 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 RPAD+IT+ ++ + + C + C + ++ +A A L Sbjct: 72 GRPADRITLAEIYRCAVGDKPLWACSPKAEQVCLVTAHAAEYFAALTAEAEQAVLASLGD 131 Query: 125 YSIECLVRNRSSI 137 ++ V S+ Sbjct: 132 RTLAESVGELRSL 144 >gi|325261234|ref|ZP_08127972.1| putative Rrf2 family protein [Clostridium sp. D5] gi|324032688|gb|EGB93965.1| putative Rrf2 family protein [Clostridium sp. D5] Length = 139 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H ++A C + + + K++ L K +++T G +GG ++ +P Sbjct: 8 AVHALVYL-DHKQETLSSEELAGNICTNPVRVRKVMARLKKHKLLDTKEGLKGGYKIAQP 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121 ++I++ + A E A + + + C + S + ++ + Sbjct: 67 PEKISLKQICDALEMDIVKASWHSGN-----IDMPCLVASGMAGVMDGIYGDLNKIGKQY 121 Query: 122 LTQYSIECL 130 L +I+ + Sbjct: 122 LETITIKDI 130 >gi|153010905|ref|YP_001372119.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562793|gb|ABS16290.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi ATCC 49188] Length = 154 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A H P +A+A + + + +++ L + G V + +G GG + Sbjct: 11 LHVLLHMAEHKG-PVTSEVLAKAMTTNPVVVRRVMGGLREQGYVRSEKGHGGGWEIACDL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +++T+ D+ +A E +A + C + + L+ A N + + ++ Sbjct: 70 NKVTLRDIYEAIGEPALLAMGNRTEMPGCLVEQAVNASLSKAFTDAENLLLERFGEVTLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 MLSAD 134 >gi|115351142|ref|YP_772981.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281130|gb|ABI86647.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria AMMD] Length = 151 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116 GG L R +IT+LDV +A +++ A + C + + VL A Sbjct: 61 GGGALLAREPGKITLLDVYRAVDDAQLFALHREAPNPACLVGRH--IQGVLIDYIGDAQR 118 Query: 117 AFFDVLTQYSIECLVRN 133 A L ++ + + Sbjct: 119 AMEASLATRTLADVTAD 135 >gi|330992283|ref|ZP_08316231.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp. SXCC-1] gi|329760482|gb|EGG76978.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp. SXCC-1] Length = 149 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 16/141 (11%) Query: 6 RTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 RT + +++ A + + P +IAE ++ L ILQ L +AG+++ VRG GG Sbjct: 7 RTAIALVIMLDVAFYGTAERPVSTIEIAERSSLARRGLEPILQGLARAGLLKGVRGPHGG 66 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL- 122 RL PA +I + D+ + +V+R L+ +L Sbjct: 67 YRLALPAREILLSDICRIA---------LHDGAHAADRRQGALFNTVIRPFLDQMDGLLA 117 Query: 123 ---TQYSIECLVRNRSSIKKI 140 ++ +++ VR ++ ++ + Sbjct: 118 HEYSKLTLQDFVR-QAEMRGL 137 >gi|330958789|gb|EGH59049.1| hypothetical protein PMA4326_09575 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 148 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + L A+ + P R +A + + + +L L AG+ + G Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L RPA++I +LDV +A E++ + + C + G+ L L +A +A Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDTELFSSHRVAPCEKCAVGGNILEALAPTLVRARSAL 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 D L + ++ + + + K Sbjct: 121 EDELAKVTVADIAAEVARLGK 141 >gi|224541787|ref|ZP_03682326.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM 15897] gi|224525284|gb|EEF94389.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM 15897] Length = 140 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 4/134 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +T + L+Y + D ++A+ C + + +++ L +AG+++ G Sbjct: 5 RMTSDFSIAVHALVYLGKNQD-LISSDELAKHICTHPVRVRRVMIKLREAGLIKAKAGVD 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNAF 118 GG RL + AD IT+ ++ K+ + + S + S+ A Sbjct: 64 GGYRLDKEADDITLSEIAKSVSNDYIHVTWHNGEDGREAIKDSKVEQAIDSIFVDLNEAC 123 Query: 119 FDVLTQYSIECLVR 132 ++L +IE ++ Sbjct: 124 DNLLKNKTIEDIMN 137 >gi|299537227|ref|ZP_07050530.1| YwnA [Lysinibacillus fusiformis ZC1] gi|298727468|gb|EFI68040.1| YwnA [Lysinibacillus fusiformis ZC1] Length = 137 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 4/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + R I +L A +D S IA + + + + +++ L KAG++ + G Sbjct: 2 VNSRFSVAIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLSSHSG-M 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119 G L +T+L + +A + + C + L V A Sbjct: 61 AGYELLVEPKDLTLLAIYQAIDGPEQLFAIHDEPNPACAVGQKIQHTLEGVYTSVWLAMK 120 Query: 120 DVLTQYSIECLVRN 133 + L +++ ++ Sbjct: 121 EQLQAQTLQDVLDQ 134 >gi|315281000|ref|ZP_07869741.1| transcription regulator [Listeria marthii FSL S4-120] gi|313615357|gb|EFR88761.1| transcription regulator [Listeria marthii FSL S4-120] Length = 161 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 6/142 (4%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D I +L Y I N IA + + + +I+ L KA ++ T Sbjct: 7 MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKADLITTQT 65 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116 G+ L RP ++I++LDV K+ E + + DC + + LTS Sbjct: 66 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQK 124 Query: 117 AFFDVLTQYSIECLVRNRSSIK 138 + Q ++ +V + S ++ Sbjct: 125 KLELEMEQIKLDSIVHDISVLE 146 >gi|239626598|ref|ZP_04669629.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516744|gb|EEQ56610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 144 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 8/133 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ H +AE C + + K++ L KA +V+T G G Sbjct: 1 MTSEFTIAVHALVFL-NHKAQVYSSEGLAENVCTNAARIRKVMAKLKKADLVKTKEGVDG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF--- 118 G R + +I++ V +A + F + C + G+ V+ + Sbjct: 60 GYLFHRDSREISLSMVAEALDTPFVTVSWKSGDPHMSCMIAS--GMAGVMDELYGDLDRC 117 Query: 119 -FDVLTQYSIECL 130 + L+ +I L Sbjct: 118 CRERLSHVTIADL 130 >gi|241764639|ref|ZP_04762653.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] gi|241365910|gb|EER60547.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii 2AN] Length = 147 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A D P IA+ + + + + + L +AGIV + RG GG R+ Sbjct: 11 LHALLHMAEQ-DGPVTSETIAQCLGTNPVVVRRTMGYLREAGIVTSDRGHAGGWRIHADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ + +A E A + +C + S L +A ++ ++ Sbjct: 70 RTVTLRQLHEALGEPAMFAIGNRNEAPECLVEQSVNAALEGTFAEAEALLLKRFSEITLA 129 Query: 129 CL 130 L Sbjct: 130 DL 131 >gi|126650263|ref|ZP_01722491.1| YwnA [Bacillus sp. B14905] gi|126592913|gb|EAZ86895.1| YwnA [Bacillus sp. B14905] Length = 130 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 4/127 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 I +L A +D S IA + + + + +++ L KAG++ + G G L Sbjct: 2 AIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLLSHSGVAG-YELLV 60 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126 +T+L + +A + + C + L V A L + Sbjct: 61 EPKNLTLLAIYQAIDGPEQLFAIHDEPNPACAVGREIQHTLEDVYTSIWQAMEAQLQAQT 120 Query: 127 IECLVRN 133 ++ ++ Sbjct: 121 LQDVLDQ 127 >gi|238855677|ref|ZP_04645976.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus jensenii 269-3] gi|260664938|ref|ZP_05865789.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|282933382|ref|ZP_06338763.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii 208-1] gi|313472516|ref|ZP_07813006.1| Rrf2 family protein [Lactobacillus jensenii 1153] gi|238831699|gb|EEQ24037.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus jensenii 269-3] gi|239529949|gb|EEQ68950.1| Rrf2 family protein [Lactobacillus jensenii 1153] gi|260561421|gb|EEX27394.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|281302486|gb|EFA94707.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii 208-1] Length = 143 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I + IA + + + +++ L A ++ET +G+ Sbjct: 1 MKYSYKFSDAIHLLSYLEIFKNEDLSSRAIAASIESNPSIIRQLMSDLRSAVLIETRQGK 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKALNAF 118 RL R IT+ D+ A + + ++C + + + V + N+ Sbjct: 61 A-SARLIRKPSDITLFDIYMAIDIDHELLHVDPKTNLNCSVGRNVQTSLVGFYEEIQNSA 119 Query: 119 FDVLTQYSIECLVRN 133 F+ + + +++ ++ + Sbjct: 120 FEQMKKITLQDVISD 134 >gi|221369698|ref|YP_002520794.1| hypothetical protein RSKD131_3861 [Rhodobacter sphaeroides KD131] gi|221162750|gb|ACM03721.1| Hypothetical Protein RSKD131_3861 [Rhodobacter sphaeroides KD131] Length = 142 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A D P QIA + + + +I+ L G V+ RG Sbjct: 6 RLSRL----LHVLLHMA-QTDAPMTSQQIAGMLGSNPVVVRRIMAGLRDGGYVDAERGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 GG R+ R +IT+LDV ++ A F++ + C + S Sbjct: 61 GGWRIIRRTTEITVLDVYRSLGSPDLFAFGFSNPRPSCLVEQS 103 >gi|167836110|ref|ZP_02462993.1| putative transcriptional regulator [Burkholderia thailandensis MSMB43] Length = 153 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPSCITLLDVCRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLADVTAD 135 >gi|167761548|ref|ZP_02433675.1| hypothetical protein CLOSCI_03959 [Clostridium scindens ATCC 35704] gi|167661214|gb|EDS05344.1| hypothetical protein CLOSCI_03959 [Clostridium scindens ATCC 35704] Length = 142 Score = 76.9 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 15/148 (10%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + L+Y H + ++AE C + + K++ L K ++ T G Sbjct: 1 MREMTSEFAIAVHALVYL-HHKNAVLSSEELAENICTNSARVRKVMAKLKKKELIGTKEG 59 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 +GG + A +IT+ D+ +A + + + + C + S + ++ + Sbjct: 60 IKGGYHMSLDASEITLGDICEALQ-----VDIVKAAWRSGSMDMDCMIASGMAGVMDGIY 114 Query: 120 DVLTQ--------YSIECLVRNRSSIKK 139 L + +I+ + + + KK Sbjct: 115 AELDEICKKRLKGITIQDVEKKVAGCKK 142 >gi|27383085|ref|NP_774614.1| hypothetical protein blr7974 [Bradyrhizobium japonicum USDA 110] gi|27356259|dbj|BAC53239.1| blr7974 [Bradyrhizobium japonicum USDA 110] Length = 152 Score = 76.9 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 6/135 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A P +A+A + + + +I+ L G V + +G GG L Sbjct: 11 LHVLLHMAQQPG-PFTSETLAKAMDTNPVVIRRIMAGLRDLGYVRSEKGHGGGWTLACDL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 ++T+ DV A +A + C + + L + A L ++ Sbjct: 70 SKVTLRDVYTALGNPPLLAMGNRTEAPGCLVEQAVNAALDRTFQDAEALLLSRLGAVTLA 129 Query: 129 CLVRNRSSIKKIFNA 143 L + ++K A Sbjct: 130 MLGDD---LRKRLGA 141 >gi|15891278|ref|NP_356950.1| hypothetical protein Atu3666 [Agrobacterium tumefaciens str. C58] gi|15159653|gb|AAK89735.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 152 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+LT+ ++ I +L + + ++A +++ +++ LV+ G++++ RGR Sbjct: 1 MYLTRESEIAIGILTNFVHEAEEAHTTGKLAHRLGVTKDHAARVVAILVRNGLLQSRRGR 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 GGV L + +++ +++AT+ V + G+ G+ +L +A + +F Sbjct: 61 TGGVVLNVDPESLSVGMILRATQ-PVLVRRPRTRNANP---SGTTGVFHMLAEATSDYFI 116 Query: 121 VL-TQYSIECLV 131 L I +V Sbjct: 117 ELADSCKIADVV 128 >gi|295097954|emb|CBK87044.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 148 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A + + + +A + F+ K++ PL + GI+ + GR G + L RPA++IT Sbjct: 5 VAMAEQSGERSTSAILAYGLEANPSFIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEIT 64 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVR 132 + D+ + E + C + +C S+ +A A VL ++++ + Sbjct: 65 LRDIYLSVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASLAVLARHTVASALE 124 Query: 133 N 133 Sbjct: 125 E 125 >gi|296115500|ref|ZP_06834133.1| Rrf2 family DNA binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295977983|gb|EFG84728.1| Rrf2 family DNA binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 150 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A P +A A + + + +++ L + G V + +G GG L Sbjct: 11 LHVLLHMA-EAGGPMTSEALARALNTNPVVVRRLMGGLREHGYVHSEKGHGGGWTLSCQL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 D++T+ D+ +A + A S K +C + + ++ VL Q ++ Sbjct: 70 DRVTLRDIYEALDAPRLFAIGNRSEKTECLVEEAVNDAMSGVLADVTAQLLARFGQITLA 129 Query: 129 CL 130 L Sbjct: 130 AL 131 >gi|296117178|ref|ZP_06835771.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976273|gb|EFG83058.1| transcriptional regulator, BadM/Rrf2 family protein [Gluconacetobacter hansenii ATCC 23769] Length = 151 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 8/129 (6%) Query: 10 GIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 I +++ A H ++IA+ ++ + +LQ L ++G++ VRG GG RL Sbjct: 11 AIFIMLDIAFHGMHGNTVSATEIAQRSGMARRGIEPLLQVLSRSGLLSGVRGPHGGYRLG 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 PA +I + D+ +A +A + + PL + + L + + ++ Sbjct: 71 HPAREILLSDIHQAI-----MARHDRMERRNGPLFNT-VIRPFLNQMEGMLEREYRKVTL 124 Query: 128 ECLVRNRSS 136 + LVR + Sbjct: 125 DELVRQAEN 133 >gi|226197582|ref|ZP_03793157.1| transcriptional regulator [Burkholderia pseudomallei Pakistan 9] gi|225930191|gb|EEH26203.1| transcriptional regulator [Burkholderia pseudomallei Pakistan 9] Length = 141 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L++ H + IA+ + + + +++ L G V + +G GG L D Sbjct: 1 MLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHGGGWELVCDLDA 59 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECL 130 IT+LDV +A E + + + DC + + +T L +A ++ L Sbjct: 60 ITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLLAHFGAITVGDL 119 Query: 131 VRN 133 R+ Sbjct: 120 ARD 122 >gi|167565612|ref|ZP_02358528.1| Transcriptional regulator family protein [Burkholderia oklahomensis EO147] Length = 153 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A + + + + DC + + + L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALDEAETLLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLTRD 134 >gi|167572719|ref|ZP_02365593.1| Transcriptional regulator family protein [Burkholderia oklahomensis C6786] Length = 153 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D IT+LDV +A + + + + DC + + + L +A Sbjct: 61 GGWELVCDLDAITLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALDEAETLLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLTRD 134 >gi|325124883|gb|ADY84213.1| Transcription regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 142 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 3/142 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +L Y I D IA + + + ++ L KAG ++T +G Sbjct: 1 MKFSHKLSDAVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGFLKTKQG- 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 L + ++I++ D+ A + + CP+ G+ L + A Sbjct: 60 SAEPELAKKPEEISLYDIFAAVGMEHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119 Query: 119 FDVLTQYSIECLVRNRSSIKKI 140 F + + S+ +V ++ Sbjct: 120 FAKMREISLREIVDQIKEEGQL 141 >gi|23336286|ref|ZP_00121509.1| COG1959: Predicted transcriptional regulator [Bifidobacterium longum DJO10A] gi|189440615|ref|YP_001955696.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|189429050|gb|ACD99198.1| Putative transcriptional regulator [Bifidobacterium longum DJO10A] Length = 140 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 10 GIRVLMYC---AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + L+Y A H +AE C + + K+++PL AG++ T G GG L Sbjct: 8 AVHALVYLDYRATH----LPSQILAENICTNAARVRKVMRPLASAGLIATKEGTEGGYAL 63 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 RPA +IT+ V +AT +F + C ++S + ++ + L + Sbjct: 64 ARPAAEITLRAVAEATGTTFVKVNWTPGD-----VHEDCLVSSSMGAVMDDIYAGLNRTC 118 Query: 127 IECL 130 +E L Sbjct: 119 LEQL 122 >gi|149177505|ref|ZP_01856108.1| hypothetical protein PM8797T_15496 [Planctomyces maris DSM 8797] gi|148843655|gb|EDL58015.1| hypothetical protein PM8797T_15496 [Planctomyces maris DSM 8797] Length = 136 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 3/119 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A H P ++E + + + + + L K G V++ +G GG L +T+ Sbjct: 1 MAEHPG-PVTSKDLSEMMVTNPVVIRQTMAGLRKQGYVKSEKGHGGGWTLACDPSTVTLQ 59 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 D+ A +A + C + + L +A + ++ L+ Sbjct: 60 DIYAALGSPSLLAISNRTESPGCLVEQAVNSTLQQTFNEAEELLLSRFGEITLAMLIAE 118 >gi|291457248|ref|ZP_06596638.1| transcriptional regulator family protein [Bifidobacterium breve DSM 20213] gi|291381083|gb|EFE88601.1| transcriptional regulator family protein [Bifidobacterium breve DSM 20213] Length = 135 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L+Y H + +AE C + + K+++PL AG+ T G GG L +PA Sbjct: 1 MHALVYL-DHRNTHLPSQILAENICTNAARVRKVMRPLAAAGLAATKEGAEGGYALAQPA 59 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 IT+ V +AT +F ++ + C ++S + ++ +D L + +E L Sbjct: 60 ADITLSTVAEATGTTF-----VDANWKPGDIHEECLVSSSMGAVMDGIYDGLNRTCLEQL 114 Query: 131 VR 132 Sbjct: 115 AH 116 >gi|225386837|ref|ZP_03756601.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme DSM 15981] gi|225047063|gb|EEG57309.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme DSM 15981] Length = 142 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 7 TDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +DY + L+Y H ++AE C + + K++ L KAG V+T G GG Sbjct: 3 SDYCVAVHALVYL-NHKAKVLSSEELAENICTNPARVRKVMAKLKKAGFVKTKEGSEGGY 61 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 + ADQ+T+ + +A E F + C + S + ++ FD L + Sbjct: 62 LFDQDADQVTLDQIAQALEIRFVDTAWKSGDTDM-----KCLVASGMAGLMDEIFDDLNE 116 >gi|83717641|ref|YP_439674.1| transcriptional regulator family protein [Burkholderia thailandensis E264] gi|83651466|gb|ABC35530.1| Transcriptional regulator family [Burkholderia thailandensis E264] Length = 172 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 25 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 79 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D +T+LDV +A + + + + DC + + + L +A Sbjct: 80 GGWELACELDAMTLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALNEAETLLL 139 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 140 ARFGAITVGDLARD 153 >gi|225019902|ref|ZP_03709094.1| hypothetical protein CLOSTMETH_03856 [Clostridium methylpentosum DSM 5476] gi|224947266|gb|EEG28475.1| hypothetical protein CLOSTMETH_03856 [Clostridium methylpentosum DSM 5476] Length = 167 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 22/144 (15%) Query: 3 LTKRTD--------YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T + D + L++ H +A+ C + + K++ L K G+V Sbjct: 21 ITVKGDELMTGEFAVAVHALVFL-NHKQKTVSSETLADNVCTNPARIRKVMAKLKKHGLV 79 Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114 +T G GG + ++T+ V +A +S L C ++S + + Sbjct: 80 QTKEGADGGYQFVLNPREVTLAQVCEAVGNRL-----VSSSWRSGDLDKKCLISSGMGEI 134 Query: 115 LNAFFDVLTQY--------SIECL 130 +N ++ L +I+ + Sbjct: 135 MNGIYEQLNDVCMQKLQTMTIQDI 158 >gi|78065784|ref|YP_368553.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383] gi|77966529|gb|ABB07909.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383] Length = 151 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 2/141 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118 GG L R IT+LDV +A +++ A + C + L + A A Sbjct: 61 GGGALLAREPGAITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGALIDYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 L ++ + + ++++ Sbjct: 121 EASLGTRTLADVTADVLNLEQ 141 >gi|169828207|ref|YP_001698365.1| YwnA [Lysinibacillus sphaericus C3-41] gi|168992695|gb|ACA40235.1| YwnA [Lysinibacillus sphaericus C3-41] Length = 137 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 4/134 (2%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + R I +L A +D S IA + + + + +++ L KAG++ + G Sbjct: 2 VNSRFSVAIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLLSHSGVA 61 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119 G L +T+L + +A + C + L V A Sbjct: 62 G-YELLVEPKNLTLLAIYQAINGPEQLFAIHDEPNPACAVGREIQHTLEDVYTSIWQAME 120 Query: 120 DVLTQYSIECLVRN 133 L +++ ++ Sbjct: 121 AQLHAQTLQDVLDQ 134 >gi|116512690|ref|YP_811597.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108344|gb|ABJ73484.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis subsp. cremoris SK11] Length = 154 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 7/149 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K + + VL+ A D + +++ +S+ L K+L+ LV ++E+ Sbjct: 1 MKLSKHLEEAVYVLLILATQKDQQALKSKTLSKLLEVSDSSLKKVLRQLVVNNLIESTAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113 + GG +L + ++I++ DV+ A E F++ + L + L K Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADLSHIGQRIFPNKAHTLESESLVIETLTK 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 A N + L + + L+ + K + Sbjct: 121 AQNLYALELEKLKLSDLLLAEAMDNKTLD 149 >gi|315497061|ref|YP_004085865.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis excentricus CB 48] gi|315415073|gb|ADU11714.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis excentricus CB 48] Length = 139 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 19/145 (13%) Query: 1 MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M ++R L Y A + S +A + + + + ++ L KAG+V+T Sbjct: 1 MSDSQRFPVAAHTLAYLAHKGAYSREQAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVDT 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116 G GG L +PA+ I + V+ A C P C + + KA++ Sbjct: 61 CSGVSGGTWLLKPAETIPLDQVLHAVHG------CAHLGSAP-PGADGCPVGQAIPKAVS 113 Query: 117 --------AFFDVLTQYSIECLVRN 133 A + L++ ++ L+RN Sbjct: 114 GAMKAANAAATETLSKITVADLIRN 138 >gi|254421022|ref|ZP_05034746.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] gi|196187199|gb|EDX82175.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] Length = 162 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 23/150 (15%) Query: 11 IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + L++ A H P Q+A + + + + + L + G+V + +G GG RL Sbjct: 11 LHALLHMAEHEARTGAPMTSDQLAVCLSTNPVVVRRTMAGLREQGLVASEKGHGGGWRLA 70 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF-------- 119 RP DQ+T+ V A E + C + + + AL + Sbjct: 71 RPLDQVTLGQVNTALGEPGLF------PEAPPVEADGCLVEAAVNDALAGTYAAARALLV 124 Query: 120 DVLTQYSIECLVRN------RSSIKKIFNA 143 L + ++ L + + + NA Sbjct: 125 ARLNEITLADLAADFARRMAEHPKRDLLNA 154 >gi|118586565|ref|ZP_01544007.1| transcriptional regulator, Rrf2 family [Oenococcus oeni ATCC BAA-1163] gi|118433006|gb|EAV39730.1| transcriptional regulator, Rrf2 family [Oenococcus oeni ATCC BAA-1163] Length = 146 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%) Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 T+ +D +L+Y A+H N + S+IA + + + +I+ L KA ++ V+G Sbjct: 4 TQLSD-ATHILVYIALHKNKQSVKSSEIAVSLQTAPSLVRRIMSKLKKAHLLNAVQGSP- 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 L + A+QIT+ ++ A + + + + CP+ + L R+ A Sbjct: 62 QPVLAKAAEQITLQEIYLAVSQKRNLLNVDQNTDMLCPIGTAIPKVLDHYYREIQTAAEM 121 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 + + +++ ++ + +K F++ Sbjct: 122 KMAEITLQDIINDTKVQEKQFDS 144 >gi|77745399|gb|ABB02600.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 125 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 + IA S + + +++ L KAG++ TV G L + + I++ DV A E Sbjct: 1 TSNNIASTIETSPVVVRRLMSALNKAGLINTVHGAA-DPALAKSPENISLYDVFLAIEGD 59 Query: 86 FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 + C + G+ L ++A A L + S++ ++ + + +A Sbjct: 60 AHLFTIDERTNPQCIVGGNIQETLDGFYQQAETAAKAKLARISLQDVIDTIRVKQALKDA 119 >gi|119384163|ref|YP_915219.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373930|gb|ABL69523.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 156 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ H QIA+ + + + +++ L + GIV + +G GG +L P Sbjct: 11 LHVLIHMDRHVGR-ATSEQIAQMISTNAVVVRRMMAGLRERGIVSSEKGHGGGWQLACPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +I++ DV +A + C + + L + L +A ++E Sbjct: 70 AEISLRDVYEAVGHPPLFNIGPQADPSPCLVEQAVDARLDATLAEAETRLLAQFAAITVE 129 Query: 129 CLVRN 133 + ++ Sbjct: 130 EVAQD 134 >gi|229826985|ref|ZP_04453054.1| hypothetical protein GCWU000182_02369 [Abiotrophia defectiva ATCC 49176] gi|229788603|gb|EEP24717.1| hypothetical protein GCWU000182_02369 [Abiotrophia defectiva ATCC 49176] Length = 146 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 28/149 (18%) Query: 1 MHLTKRT----------DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50 MH+T + DY + + +A + + + + ++ L + Sbjct: 1 MHITSKFTIAAHIIAAIDY---------FKDSEKVTSNFLAGSVGANPVIVRNVMGNLKE 51 Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT 108 AGI+ +G+ G + L + D+IT DV KA + + + + I+CP+ + + Sbjct: 52 AGIIAISQGKSG-ISLAKELDEITFYDVYKAVDCVDDEGLFHFHENPNINCPVGRN--IH 108 Query: 109 SVL----RKALNAFFDVLTQYSIECLVRN 133 S + ++ + + L+ ++ +V + Sbjct: 109 SAMDEKLQRVQSIMENELSCITMADVVAD 137 >gi|167616242|ref|ZP_02384877.1| Transcriptional regulator family protein [Burkholderia thailandensis Bt4] gi|257142813|ref|ZP_05591075.1| transcriptional regulator family protein [Burkholderia thailandensis E264] Length = 153 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ H + IA+ + + + +++ L G V + +G Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119 GG L D +T+LDV +A + + + + DC + + + L +A Sbjct: 61 GGWELACELDAMTLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALNEAETLLL 120 Query: 120 DVLTQYSIECLVRN 133 ++ L R+ Sbjct: 121 ARFGAITVGDLARD 134 >gi|229184988|ref|ZP_04312178.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|228598463|gb|EEK56093.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] Length = 85 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 + K G++ + G +GG L + I+ LD++ A E + EC K C + Sbjct: 1 MTKEGMIHSSSGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPG------CLI 54 Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133 + A + L I L + Sbjct: 55 NEAMLAAEEKMEEELRNQKIVDLAKK 80 >gi|206560912|ref|YP_002231677.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198036954|emb|CAR52866.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 177 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A D P +A + + + + + L +AGIV + RG GG R+ Sbjct: 39 LHALLHMAEQ-DGPVTSETLALCLGTNPVVVRRTMGYLRQAGIVTSERGHSGGWRIHADL 97 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128 +T+ + +A E A + +C + + L +A ++ ++ Sbjct: 98 GSVTLRQLHEALGEPATFAIGNRNETPECLVEQTVNAALEGTFAEAEALLLKRFSEITLA 157 Query: 129 CLVRN 133 L + Sbjct: 158 DLASD 162 >gi|167587582|ref|ZP_02379970.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia ubonensis Bu] Length = 151 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL ++ P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 GG L R IT+LDV +A +++ A + C + LT + A A Sbjct: 61 GGGALLAREPGSITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120 Query: 119 FDVLTQYSIECLVRN 133 L ++ + + Sbjct: 121 EASLATRTLTDVTAD 135 >gi|94313254|ref|YP_586463.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357106|gb|ABF11194.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus metallidurans CH34] Length = 147 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 5/139 (3%) Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M T+ + VL++ + IA + + + + + L AG V++ G Sbjct: 1 MRFDTRLARL-LHVLVHMHLRGGS-TTSENIALMLHTNPVVVRRTMAALRDAGYVQSTGG 58 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117 R GG L R + T+ DV A + A A CP+ + + L A Sbjct: 59 RGGGWDLARDLEDFTVKDVYVAIAHTALFALGPADDNPACPVEAAVNRHINEALSSAEMT 118 Query: 118 FFDVLTQYSIECLVRNRSS 136 + + + R+ +S Sbjct: 119 MLRFFGEKRLAEIARDATS 137 >gi|310642195|ref|YP_003946953.1| transcriptional regulator, badm/rrf2 family [Paenibacillus polymyxa SC2] gi|309247145|gb|ADO56712.1| Transcriptional regulator, BadM/Rrf2 family [Paenibacillus polymyxa SC2] Length = 149 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 5/128 (3%) Query: 10 GIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 ++ L+ + + ++A+ L +IL L K G++ T GR GG L + Sbjct: 18 AVQALVILSQEDKSIACPSIELAKYLQSEPSLLRRILSVLAKEGLIGTREGRDGGYHLRK 77 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQY 125 PA+ I ++DV ++ PL G C L + ++ ++ VL++Y Sbjct: 78 PAESIRLVDVYDVFRSDSRLSFGITETAGTHPL-GKCMKSTLEDITQEMDDSIRGVLSKY 136 Query: 126 SIECLVRN 133 +I L Sbjct: 137 TIADLANQ 144 >gi|299135050|ref|ZP_07028241.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2] gi|298590027|gb|EFI50231.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2] Length = 147 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ H + P +A+ + + + + + L KAGIV + RG GG + Sbjct: 11 LHALLHMIGHGE-PMTSEALAQCMDTNPVVVRRTMGLLRKAGIVTSARGHSGGWHIRADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 IT+ D+ E A + + +C + + L R+ + + ++ Sbjct: 70 GSITLRDLHHVLGEPAIFAIGNRNPEPECLVEQAVNAALDGAFRETEALLLERFAEVTLA 129 Query: 129 CLVRN 133 LV + Sbjct: 130 DLVAD 134 >gi|317053397|ref|YP_004119164.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] gi|316953136|gb|ADU72608.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] Length = 140 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A + Q+AE + + + + L +AG V + +G GG L Sbjct: 11 LHVLVHLACDSGN-YTSQQLAEMLDTNAALVRRTMAGLREAGYVRSEKGHNGGWSLSCDP 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128 Q+T+LD+ KA + C + + L L++A + + L + ++ Sbjct: 70 AQVTLLDIYKAVGITHLYNLGINRDNPHCLIENAVNDELDGALKQAESLLMNRLNEITLS 129 Query: 129 CLVRN 133 L Sbjct: 130 HLCNK 134 >gi|153814006|ref|ZP_01966674.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756] gi|145848402|gb|EDK25320.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756] Length = 86 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 41/86 (47%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 + K+G++E RG +GG +L + + T+ DVV A E F V EC I C + Sbjct: 1 MNKSGLIEIRRGPKGGYQLAKDIGEFTLYDVVTAIEPDFAVMECVHHSCIRNESKEGCAV 60 Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133 L ++ +L + ++ +++ Sbjct: 61 HRELLGIQHSVEKLLKKKTMADILKK 86 >gi|313899650|ref|ZP_07833153.1| transcriptional regulator [Clostridium sp. HGF2] gi|312955265|gb|EFR36930.1| transcriptional regulator [Clostridium sp. HGF2] Length = 145 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 14/132 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L Y H + ++A++ C + + K++ L KAG++ET G GG L Sbjct: 8 ALHALAYL-RHRNTKVSSEELAKSICTNPARIRKVMAKLKKAGLLETREGNSGGYELHGD 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF--------FDV 121 A I + D+ +A ++ S L C + + + ++ Sbjct: 67 AAAIRLSDLAQALQQPLT-----KSGWRSGTLNTYCMIATGMGTVVDTLEASLNEVCMQS 121 Query: 122 LTQYSIECLVRN 133 L+Q +IE + + Sbjct: 122 LSQITIEDISQQ 133 >gi|309777458|ref|ZP_07672413.1| transcriptional regulator superfamily [Erysipelotrichaceae bacterium 3_1_53] gi|308914772|gb|EFP60557.1| transcriptional regulator superfamily [Erysipelotrichaceae bacterium 3_1_53] Length = 150 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 14/132 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L Y H ++A++ C + + K++ L KAG++ T G GG L P Sbjct: 12 ALHALAYL-DHRRTKVSSEELAKSICTNPARIRKVMAKLKKAGLLITREGNSGGYELSAP 70 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124 A I + D+ +A ++ S L C + + + ++ L + Sbjct: 71 ASAIRLSDLAQALQQPL-----LKSGWRSGTLNTYCMIATGMGSVVDTLEASLNEECLRH 125 Query: 125 ---YSIECLVRN 133 +IE + R Sbjct: 126 LSHITIEDISRQ 137 >gi|315647630|ref|ZP_07900732.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] gi|315277069|gb|EFU40410.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus vortex V453] Length = 152 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 13/131 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ L+ H+ IA + + +IL+ L A ++E+ GR GG RL + Sbjct: 26 AVQALVALERHSGK-CSSGDIASYLHLESTLIRRILKTLAHADMIESREGRDGGYRLKKN 84 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLRKALNAFFDVL 122 A IT+ +V + +++ G C +L + + +L Sbjct: 85 ASDITLAEVYSILQVHNSISDGMLDAT-----TGHCFAAEIRESFAGILSEIEESTLKIL 139 Query: 123 TQYSIECLVRN 133 +I +V Sbjct: 140 ESRTIADMVEQ 150 >gi|315182618|gb|ADT89531.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC 11218] Length = 124 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 2/113 (1%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 P Q A + + + + + L AG V + +G+ GG L ++T+LD+ +A Sbjct: 6 QPMTSEQFATMLGTNAVVIRRTMAGLRDAGYVTSTKGQGGGWTLSCDLQRVTLLDIYQAV 65 Query: 83 EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 E + F + +C + + L VL +A +Q S+ L + Sbjct: 66 GEPKIFSIGFDNVNPNCVVEKAVNASLRDVLHEAEVLLLTRFSQISLADLSQE 118 >gi|322835180|ref|YP_004215206.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602] gi|321170381|gb|ADW76079.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602] Length = 161 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 + + +A + F+ K++ PL + GI+ + GR G + L RPA++IT+ D Sbjct: 19 SQKAGQRCTSAILATGLEANSSFIRKLMVPLTQHGIIVSTLGRTGSITLGRPAEEITLRD 78 Query: 78 VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIEC 129 + A E + C + +C +++ +A A F VL ++++ Sbjct: 79 IYCAVIEDKRLWAARPDVPARCVVSANACTYFKNIVSEAEEASFQVLARHTVAD 132 >gi|125624777|ref|YP_001033260.1| hypothetical protein llmg_2002 [Lactococcus lactis subsp. cremoris MG1363] gi|124493585|emb|CAL98570.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071577|gb|ADJ60977.1| hypothetical protein LLNZ_10320 [Lactococcus lactis subsp. cremoris NZ9000] Length = 154 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 7/149 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+K + + VL+ A D + ++ +S+ L K+L+ LV ++E+ Sbjct: 1 MKLSKHLEEAVYVLLILATQKDQQALKSKTLSNLLEVSDSSLKKVLRQLVVNNLIESTAS 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113 + GG +L + ++I++ DV+ A E F++ + L + L K Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADLSHIGQRIFPNKAHTLESESLVIETLTK 120 Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 A N + L + + L+ + K + Sbjct: 121 AQNLYALELEKLKLSDLLLAEAMDNKTLD 149 >gi|225569272|ref|ZP_03778297.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM 15053] gi|225571816|ref|ZP_03780686.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM 15053] gi|225159528|gb|EEG72147.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM 15053] gi|225162071|gb|EEG74690.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM 15053] Length = 143 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L+Y H D ++AE C + + K++ L K +V T G +G Sbjct: 1 MTSEFAIAVHALVYL-RHKDTVVSSEELAENICTNPARVRKVMAKLKKKALVGTKEGIKG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF-- 119 G + A +T+ V A EE A + +DC + G+ ++ + Sbjct: 60 GYHMAADASAVTLRCVCDALEEEVIKASWKSGSIDMDCMIAS--GMAGMMDGIYSEMNAQ 117 Query: 120 --DVLTQYSIECL 130 D L +IE + Sbjct: 118 CKDYLETVTIEDV 130 >gi|146311547|ref|YP_001176621.1| BadM/Rrf2 family transcriptional regulator [Enterobacter sp. 638] gi|145318423|gb|ABP60570.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638] Length = 159 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 8/134 (5%) Query: 8 DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY +++++ A + + + +A + F+ K++ PL + GI+ + GR Sbjct: 3 DYRFPTALQMVLSVAMAEQSGERSTSTILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119 G + L RPAD+IT+ D+ + E + C + +C S+ +A A Sbjct: 63 GSIHLGRPADKITLRDIYISVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASL 122 Query: 120 DVLTQYSIECLVRN 133 +VL ++++ + Sbjct: 123 EVLARHTVASALEE 136 >gi|65320070|ref|ZP_00393029.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis str. A2012] Length = 85 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 + K G + + G +GG L + I+ LD++ A E + EC K C + Sbjct: 1 MTKEGXIHSSSGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPG------CLI 54 Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133 + A + L I L + Sbjct: 55 NEAMLAAEEKMEEELRNQKIVDLAKK 80 >gi|154244034|ref|YP_001414992.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158119|gb|ABS65335.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter autotrophicus Py2] Length = 146 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 33 ACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92 + L +LQ LV AG+++ VRG RGG L R ++++ ++V+ E + E Sbjct: 35 RHGLPPRRLEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRVVEGAEEEKEII 94 Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 PLV + + A + F L ++E L R+ Sbjct: 95 LP-----PLVTE-VVQPAVAAAEDTFDTALDAVTLEDLCRSADG 132 >gi|260427698|ref|ZP_05781677.1| transcriptional regulator [Citreicella sp. SE45] gi|260422190|gb|EEX15441.1| transcriptional regulator [Citreicella sp. SE45] Length = 156 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ H QIA+ + + + +++ L + GIV + +G GG +L P Sbjct: 11 LHVLIHLDRHVGR-ATSEQIAQMISTNAVVVRRMMAGLRERGIVSSEKGHGGGWQLACPL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +I++ DV +A + C + + L + L +A ++E Sbjct: 70 AEISLRDVYEAVGHPPLFNIGPQADPSSCLVEQAVDARLDATLAEAEARLLTQFAAITVE 129 Query: 129 CLVRN 133 + ++ Sbjct: 130 EVAQD 134 >gi|254460863|ref|ZP_05074279.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales bacterium HTCC2083] gi|206677452|gb|EDZ41939.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae bacterium HTCC2083] Length = 114 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKID 98 +L ++ + + +V + RG GG +L R A I+I +++ A +E+ ++ D Sbjct: 3 YLEQLFSKIRRNDLVVSTRGHGGGYKLARDASAISIEEILLAVDENIDALSTGAGMKGGD 62 Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 C + + L + ++ ++ + Sbjct: 63 CGSIEQVLSNKMWESLSAQVHLYLHRTTLADVIDD 97 >gi|256004457|ref|ZP_05429437.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] gi|255991598|gb|EEU01700.1| transcriptional regulator, BadM/Rrf2 family [Clostridium thermocellum DSM 2360] Length = 65 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + Y + ++ A +N + I+E IS++FL ++ L KA IV + + Sbjct: 1 MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 60 Query: 59 GRRGG 63 G +GG Sbjct: 61 GAQGG 65 >gi|300773744|ref|ZP_07083613.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759915|gb|EFK56742.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 138 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ + D IA + I+ + + K ++ L +A +V + G+ GGVR+ Sbjct: 10 ATHIIALLMLERDTWLSSDYIAGSININPVVVRKEIRKLKEAQLVISKEGKNGGVRIAED 69 Query: 70 ADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 ++ T+ DV KAT +E + + +CP+ + LT V L Q Sbjct: 70 INKKTLADVYKATLASDEKGK----YNNPNPNCPVGKNINNYLTIVYNDIEEQHIAYLNQ 125 Query: 125 YSIECL 130 SI+ L Sbjct: 126 ISIQDL 131 >gi|160939845|ref|ZP_02087192.1| hypothetical protein CLOBOL_04736 [Clostridium bolteae ATCC BAA-613] gi|158437279|gb|EDP15044.1| hypothetical protein CLOBOL_04736 [Clostridium bolteae ATCC BAA-613] Length = 145 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 14/136 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ H +A C + + K++ L KA +V+T G G Sbjct: 1 MTSEFTIAVHALVFL-NHKGTVFSSEGLAANVCTNAARIRKVMAKLKKADLVKTKEGVDG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119 G R + + + V +A + F A + + +C ++S + ++ + Sbjct: 60 GYLFHRDSRDVNLSMVAEALDTPFVAASWKSGNPHM-----ACLISSGMAGIMDELYGEL 114 Query: 120 -----DVLTQYSIECL 130 L + +I L Sbjct: 115 NQCCQAYLEKVTIADL 130 >gi|225848837|ref|YP_002729001.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643212|gb|ACN98262.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 142 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 11 IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 IR L+Y A++ D + +I+EA + FL K +Q LVK GI+E+ RG +GG+ +P Sbjct: 10 IRALIYLALNQDKEYISVKEISEALNLPFFFLAKNIQKLVKEGILESYRGPKGGISFKKP 69 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 ++I I+D++ A + +C + +C + C + + ++ Sbjct: 70 INEIKIIDIIVAIDGDNLFKKCVLGFE-ECSDLNPCAIHHKWVPEREHLKGIFNA-TLYE 127 Query: 130 LVRN 133 +V + Sbjct: 128 IVND 131 >gi|225621369|ref|YP_002722627.1| Rrf2 family transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225216189|gb|ACN84923.1| Rrf2 family transcriptional regulator [Brachyspira hyodysenteriae WA1] Length = 146 Score = 74.6 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 12/148 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + +++ A + + +A++ + + KIL L AGIVET + Sbjct: 1 MKINTKLSVAAHIVLCIAFFENEGTTSNLLAKSVRTNPSIIRKILLKLQDAGIVETNKK- 59 Query: 61 RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G +L + IT+L + +A EE + F CP+ C + VL + Sbjct: 60 --GSKLIKDEKDITLLSIYEAVFTEEERGLFN-FHEPNHICPVG--CAMFDVLGEEFNNV 114 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142 F +++ +I+ + KK + Sbjct: 115 RLDFEKSMSKITIKQIADEVRKRKKHLD 142 >gi|300871768|ref|YP_003786641.1| Rrf2 family transcriptional regulator [Brachyspira pilosicoli 95/1000] gi|300689469|gb|ADK32140.1| Rrf2 family transcriptional regulator [Brachyspira pilosicoli 95/1000] Length = 146 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 12/148 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + +++ A + + IA++ + + +IL L A IVET + Sbjct: 1 MKINTKLSVATHIVLCIAFFENEGTTSNLIAKSVKTNPAIIRRILLKLQDAEIVETTKK- 59 Query: 61 RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G +L + IT+L + KA EE + F CP+ C + VL + Sbjct: 60 --GSKLIKDEKDITLLSIYKAVFTEEERGLFN-FHHPNHVCPVG--CAMFDVLGEEFNNV 114 Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142 F L++ +I+ + KK + Sbjct: 115 REDFEKSLSKITIKKIADEVRKRKKHLD 142 >gi|315642364|ref|ZP_07896981.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM 15952] gi|325571763|ref|ZP_08147144.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|315482303|gb|EFU72855.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM 15952] gi|325155659|gb|EGC67860.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 144 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y HN+ +AE C + + + ++L K G+V+T +G GG L Sbjct: 7 AVHGLVYLG-HNNSIFTSEALAENICTNPVRVRRVLAKCRKKGLVQTKKGVHGGYFLTDN 65 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124 + IT+ +V +A + + + + C ++S + +A++ +D L + Sbjct: 66 LEAITLKNVYEAIKIPIIQNTWHSGY-----INEQCMISSGMSEAMDDLYDELNKDAVAK 120 Query: 125 ---YSIECL 130 +++ + Sbjct: 121 LATITLKDM 129 >gi|296102479|ref|YP_003612625.1| putative transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056938|gb|ADF61676.1| putative transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 159 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 8 DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY +++++ A + + +A + F+ K++ PL + GI+ + GR Sbjct: 3 DYRFPTALQMVLSVAMAEQLGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFF 119 G + L RP +QIT+ D+ + E + C + + C S+ +A A Sbjct: 63 GSIHLGRPPEQITLRDIYLSVIEDKKLWASRPDVPARCVVSANTCWYFKSIAEEAEQASL 122 Query: 120 DVLTQYSIECLVRN 133 VL +++ + Sbjct: 123 AVLAGHTVASALEE 136 >gi|227871937|ref|ZP_03990329.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268] gi|227842231|gb|EEJ52469.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268] Length = 118 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE--S 85 QIA + + ++ K+ L KAGI+E +G G RL +PA +I++L++ K+ E Sbjct: 1 EQIANSVGTNASYIRKLTTRLSKAGIIEGRKGISG-FRLLKPAREISLLEIYKSIMEVKQ 59 Query: 86 FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIEC 129 + + + +C + S L + R L S+E Sbjct: 60 VHIFDIHQNPNDECIVGRSIKPTLEGMFRSMEKQMEAELAGMSLED 105 >gi|116334323|ref|YP_795850.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116099670|gb|ABJ64819.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis ATCC 367] Length = 140 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 13/130 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVR 65 I VL Y A D +A + S + KIL L + G+V T V Sbjct: 10 IHVLTYIAYFKDQKITSQAMASSLQTSPSLVRKILANLKRGGLVCPGQATTH------VS 63 Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLT 123 L +PA +IT+ D+ + + + DCP+ + L + A D + Sbjct: 64 LAKPAAEITMRDIYRTLPDRGPLLNVDTKTNEDCPVGAAVPVALNRYYAEIQAAAEDRMA 123 Query: 124 QYSIECLVRN 133 + +++ ++ + Sbjct: 124 RITLQDILAD 133 >gi|325519578|gb|EGC98937.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. TJI49] Length = 105 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVL 122 RL + ++T+ +VV+ATE F + CFA+ C + C L VL A +AFF L Sbjct: 2 RLFPASLRLTVGEVVRATEADFALVGCFAADAGSRGCVIEPQCRLKGVLAAARDAFFAEL 61 Query: 123 TQYSIECLVRNRSSIKKIFN 142 ++++ L SS+ + Sbjct: 62 DRHTLGELAAPASSLVSLLG 81 >gi|226322283|ref|ZP_03797801.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758] gi|225209313|gb|EEG91667.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758] Length = 152 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ ++ ++A+ C + + + +++ L KAG++ET G G Sbjct: 1 MTSEFAIAVHALVFL-DRSNATIASEELADNVCTNPVCIRRVMGKLKKAGLIETREGMGG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF---- 118 G R+ + IT+ + A E + A + + LV S G++ V+ + + Sbjct: 60 GYRIAKVNSDITLRQISDALENTLVKASWRSGNPDKKCLVAS-GMSVVMDELVTGMNRSC 118 Query: 119 FDVLTQYSIECLVRNRSSIKK 139 D L + +I+ + +++K+ Sbjct: 119 NDYLERITIQKVEERLTALKE 139 >gi|195940887|ref|ZP_03086269.1| BadM/Rrf2 family transcriptional regulator [Escherichia coli O157:H7 str. EC4024] Length = 130 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A + + + +A + F+ K++ PL + GI+ + GR G + L RPA++IT Sbjct: 16 VAMAEQSGERSTSAILAYGLEANPSFIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEIT 75 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSI 127 + D+ + E + C + +C S+ +A A VL ++++ Sbjct: 76 LRDIYLSVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASLAVLARHTV 130 >gi|313682246|ref|YP_004059984.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense DSM 16994] gi|313155106|gb|ADR33784.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense DSM 16994] Length = 134 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 10/129 (7%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + YG+ + A ++ +I+ IS +L ++L L + +V ++RG Sbjct: 4 LSSKAIYGLAAMHVLAHAPRSRAMQVREISAMTQISHGYLEQLLSILRRNNLVSSIRGAS 63 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG +L R A +I ++++++A E F+ KI+ + S L Sbjct: 64 GGYKLARLAHEIEVIEIIEALEGPFY--------KIEGNIGSSLILEYFWNDIEEKMR-T 114 Query: 122 LTQYSIECL 130 L + L Sbjct: 115 LFSMKLSEL 123 >gi|322373715|ref|ZP_08048251.1| putative Rrf2 family protein [Streptococcus sp. C150] gi|321278757|gb|EFX55826.1| putative Rrf2 family protein [Streptococcus sp. C150] Length = 145 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 11/142 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY----PNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M + + +++Y +I I I+E I + +++ L K GI+ + Sbjct: 1 MSYSAAFSQAVEIVLYLSIKQKEDKLKYLSIQVISEKLEIPIPSVKRLVSLLKKEGIISS 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-------TS 109 G GG+ + + + IT+ D+ ++ E S F S + Sbjct: 61 KTGIAGGLSIQKDVETITLFDIFQSIEGSKKPLFNFYDSFDLSQFENSSDVELYLNNFQE 120 Query: 110 VLRKALNAFFDVLTQYSIECLV 131 +L A +A L +I L+ Sbjct: 121 ILTNAESAMVKELKSCTISDLL 142 >gi|326692599|ref|ZP_08229604.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 141 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I+ IA + + + ++ L AG++ T +G Sbjct: 1 MRFSYKLSDAIHILAYIHINQTNDLSSKAIAASIGANASVVRSLMLDLRAAGLLTTRQGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L + + I++ D+ A + + +C + G L +A Sbjct: 61 A-TPALAQLPEDISLYDIYMAINMTHQLLHIDPKTNPNCLVGGQIQATLNHFYTDIESAA 119 Query: 119 FDVLTQYSIECLVRN 133 + + S+ ++ + Sbjct: 120 YQKMQAISLADVISD 134 >gi|238896072|ref|YP_002920808.1| putative transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238548390|dbj|BAH64741.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 173 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 4 TKRTDY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 T DY +++++ A + + +A + F+ K++ PL + GI+ + Sbjct: 13 TAMLDYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVST 72 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKAL 115 GR G + L RPAD+IT+ D+ + E + C + +C SV +A Sbjct: 73 LGRNGSIHLGRPADKITLRDIYLSVIEDKKLWASRPDVPARCVVSANACWYFKSVADEAE 132 Query: 116 NAFFDVLTQYSIE 128 A +VL ++++ Sbjct: 133 QASLNVLARHTVA 145 >gi|190576325|ref|YP_001974170.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190014247|emb|CAQ47891.1| putative transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 138 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 7/121 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + + H P Q+A + + ++L L KAG+V + RG GG L R A I Sbjct: 1 MAHLVGHA-APRTSEQLASCLPTHPVVIRRLLAQLHKAGLVRSTRGHGGGSLLARDAAAI 59 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQYSIEC 129 T+ D+ A V CP+ + S L R+A L +++ Sbjct: 60 TLHDIYLAVGAPPLVQVGARDSGGGCPIQQ--LVNSALLEGAREAQRLLEARLQATTLDQ 117 Query: 130 L 130 L Sbjct: 118 L 118 >gi|296127481|ref|YP_003634733.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296019297|gb|ADG72534.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii DSM 12563] Length = 146 Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 15/145 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + +++ A + + +A++ + + +IL L AGIV+T + Sbjct: 1 MKINTKLSIAAHIVLCIAFFENEGTTSNLLAKSVRTNPSVIRRILLKLQSAGIVKTDKK- 59 Query: 61 RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G RL + + IT+L + +A EE + F CP+ C + VL Sbjct: 60 --GSRLIKDEEDITLLSIYEAVFTEEERGLFN-FHEPNHVCPVG--CAMFDVLGDEFNNV 114 Query: 115 LNAFFDVLTQYS---IECLVRNRSS 136 F ++ + I VRNR Sbjct: 115 RLDFEKSMSNITIKKIADEVRNRKK 139 >gi|116490751|ref|YP_810295.1| BadM/Rrf2 family transcriptional regulator [Oenococcus oeni PSU-1] gi|290890174|ref|ZP_06553256.1| hypothetical protein AWRIB429_0646 [Oenococcus oeni AWRIB429] gi|116091476|gb|ABJ56630.1| transcriptional regulator, BadM/Rrf2 family [Oenococcus oeni PSU-1] gi|290480218|gb|EFD88860.1| hypothetical protein AWRIB429_0646 [Oenococcus oeni AWRIB429] Length = 146 Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%) Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 T+ +D VL+Y A+H N + S+IA + + + +I+ L KA ++ V+G Sbjct: 4 TQLSD-ATHVLVYIALHKNKQSVKSSEIAVSLQTAPSLVRRIMSKLKKAHLLNAVQGSP- 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 L + A+QIT+ + A + + + + CP+ + L R+ A Sbjct: 62 QPVLAKAAEQITLQETYLAVSQKRNLLNVDQNTDMLCPIGTAIPKVLDHYYREIQTAAEM 121 Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143 + + +++ ++ + + +K F++ Sbjct: 122 KMAEITLQDIINDTKAREKQFDS 144 >gi|300716621|ref|YP_003741424.1| transcription regulator, Rrf2 family [Erwinia billingiae Eb661] gi|299062457|emb|CAX59574.1| Transcription regulator, Rrf2 family [Erwinia billingiae Eb661] Length = 160 Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +++++ A + +A + F+ K++ PL + GI+ + GR G +RL Sbjct: 9 ALQMVLCVAQAEREGKRSTSKILAMGLEANPSFVRKMMVPLTRDGIIVSTLGRAGTIRLG 68 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQY 125 RPAD+IT+ D+ + E + C + + C + R+A A DVL + Sbjct: 69 RPADEITLCDIYTSVLEDKPLLAGRPEVPARCLVSANTCWFFKELAREAEQASLDVLAKR 128 Query: 126 SIECLVRN 133 ++ +R Sbjct: 129 TVADALRE 136 >gi|325660753|ref|ZP_08149381.1| hypothetical protein HMPREF0490_00113 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472827|gb|EGC76037.1| hypothetical protein HMPREF0490_00113 [Lachnospiraceae bacterium 4_1_37FAA] Length = 158 Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 14/136 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ H ++A+ C + + K++ L +A ++ T G G Sbjct: 1 MTSEFAIAVHALVFL-EHKGIVISSEELAKNVCTNPARIRKVMAKLKRADLIRTKEGTEG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119 G R A+++T+ V +A + SF + C + S + + + Sbjct: 60 GYLFFREAEEVTLAMVAEALQISFVSTSWRSGSP-----EKKCCVASGMADVMAGIYGDL 114 Query: 120 -----DVLTQYSIECL 130 D+L Q +I + Sbjct: 115 NACCKDLLKQRTIADV 130 >gi|124002311|ref|ZP_01687164.1| RRF2 family protein [Microscilla marina ATCC 23134] gi|123992140|gb|EAY31508.1| RRF2 family protein [Microscilla marina ATCC 23134] Length = 148 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 16/139 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M R I + ++ I D +A++ + + + +I+ L I+ +V G Sbjct: 1 MQANGRFTTAIHICIFMQIKGDEKLISSQVLADSVKTNPVVIRRIVARLRDNDIIGSVAG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--------SVL 111 +GG L RPA+QI++ D+ +A E + F K + C ++ V Sbjct: 61 AKGGFFLKRPANQISLWDIYQAVRE----TDLFYKPK---KINPECVVSMNLSELVDGVY 113 Query: 112 RKALNAFFDVLTQYSIECL 130 +A A L + L Sbjct: 114 SEAELAMKSALAPVKVSDL 132 >gi|119385841|ref|YP_916896.1| BadM/Rrf2 family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376436|gb|ABL71200.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus denitrificans PD1222] Length = 165 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A D P + + + + + + L +AG+V RG GG R+ Sbjct: 29 LHALLHMAEQ-DGPVTSEALGRCLGTNPVVVRRTMGLLREAGLVTAERGHAGGWRISADL 87 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +++ + +A E A + +C + S L +A + + ++ Sbjct: 88 AAVSLRRLHEALGEPAIFAIGNRNETPECLVEQSVNAALEGAFAEAEALLLERFAEVTLA 147 Query: 129 CLVRN 133 L + Sbjct: 148 DLAED 152 >gi|86751060|ref|YP_487556.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574088|gb|ABD08645.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris HaA2] Length = 146 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A H D P Q+A C + + + + L +AG+V + RG GG + Sbjct: 11 LHALLHMAEH-DAPMTSDQLAACMCTHPVVVRRTMGLLREAGLVASERGPSGGWLITADP 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128 +T+ D+ +A E A + +C + + L S A + + ++ Sbjct: 70 AAVTLRDLHQALGEPAIFAIGNRNETPECLVEQVVNAALDSAFVDAEALLLERFAEVTLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 KLSAD 134 >gi|254241655|ref|ZP_04934977.1| hypothetical protein PA2G_02359 [Pseudomonas aeruginosa 2192] gi|126195033|gb|EAZ59096.1| hypothetical protein PA2G_02359 [Pseudomonas aeruginosa 2192] Length = 147 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A D P +A+ + + + + + L +AGIV + RG GG R+ Sbjct: 11 LHALLHMAEQ-DGPVTSETLAQCLGTNPVVVRRTMGYLREAGIVTSDRGHAGGWRIHADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ + +A E A + +C + S L +A ++ ++ Sbjct: 70 GAVTLRQLHEALGEPAMFAIGNRNQTPECLVEQSVNAALEGTFAEAEALLLKRFSEITLA 129 Query: 129 CL 130 L Sbjct: 130 DL 131 >gi|224370917|ref|YP_002605081.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum HRM2] gi|223693634|gb|ACN16917.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum HRM2] Length = 143 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + ++ L + A H+ P + I+ I+ L + L L KAGI+ T++G Sbjct: 1 MSASSKLSNSVKALCFLAKHHPVPQNSACISMDTGINASKLRRHLSALAKAGILRTIQGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEE 84 GG L + + I + ++ A E+ Sbjct: 61 AGGFVLKKAPEDIHLQEIYCALED 84 >gi|255597053|ref|XP_002536683.1| conserved hypothetical protein [Ricinus communis] gi|223518885|gb|EEF25699.1| conserved hypothetical protein [Ricinus communis] Length = 149 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A D P +A+ + + + + + L + GIV + +G GG + Sbjct: 11 LHALLHMAEQ-DGPLTSETLAQCMHTNPVVVRRTMGLLREVGIVNSTKGHTGGWTIAADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ + +A E A + +C + S L +A ++ Sbjct: 70 KTVTLRQLHEALGEPAVFAIGNRNETPECLVEQSVNSVLDDAFAEAEALLLQRFENVTLA 129 Query: 129 CLVRN 133 L Sbjct: 130 DLAAE 134 >gi|332187195|ref|ZP_08388935.1| transcriptional regulator family protein [Sphingomonas sp. S17] gi|332012895|gb|EGI54960.1| transcriptional regulator family protein [Sphingomonas sp. S17] Length = 150 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +L++ + P A + + + + + L AG V +++G GG L Sbjct: 2 LHLLIHMG-RMEGPLTSDDAAMMLGTNPVVVRRTMAGLRDAGYVRSMKGHGGGWSLTCGL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128 D IT+LDV +A E+ A A C + + L LR+A L + ++ Sbjct: 61 DGITMLDVHRALGENRIFALGPADPAATCLVEQAVNGSLEEALREAEALLLRRLGEVTLA 120 Query: 129 CLVRN 133 + + Sbjct: 121 DIAAD 125 >gi|325519582|gb|EGC98940.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. TJI49] Length = 49 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49 M LT TDY +RV++Y A+H + I +I++A IS+ L K++Q L Sbjct: 1 MRLTDYTDYSLRVMLYLAVHGEGLATIQEISDAYGISKNHLMKVVQRLG 49 >gi|331085507|ref|ZP_08334592.1| hypothetical protein HMPREF0987_00895 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407745|gb|EGG87243.1| hypothetical protein HMPREF0987_00895 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 153 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 14/136 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ H ++A+ C + + K++ L +A ++ T G G Sbjct: 1 MTSEFAIAVHALVFL-EHKGIVISSEELAKNVCTNPARIRKVMAKLKRADLIRTKEGTEG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119 G R A+++T+ V +A + SF + C + S + + + Sbjct: 60 GYLFFREAEEVTLAMVAEALQISFVSTSWRSGSP-----EKKCCVASGMADVMAGIYGDL 114 Query: 120 -----DVLTQYSIECL 130 D+L Q +I + Sbjct: 115 NACCKDLLKQRTIADV 130 >gi|254431044|ref|ZP_05044747.1| Rrf2 family protein [Cyanobium sp. PCC 7001] gi|197625497|gb|EDY38056.1| Rrf2 family protein [Cyanobium sp. PCC 7001] Length = 144 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 GIR L+ A + ++A A + E L ++L L +AG+V RGR GG RL RP Sbjct: 9 GIRALLELATVPERWRSGPELAAAQQLPEPMLEQLLLRLRRAGVVVARRGRLGGYRLARP 68 Query: 70 ADQITILDVVKATEES 85 A +I + V+ A + Sbjct: 69 AAEIRLATVIAALQAP 84 >gi|160931599|ref|ZP_02078994.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753] gi|156869470|gb|EDO62842.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753] Length = 168 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 14/131 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ + +AE C + + K++ L KAG+V T G GG L + Sbjct: 23 AVHGLVFLKLKK-QCLSSEALAENICTNPARVRKVMAKLKKAGLVSTKEGSEGGYSLAKN 81 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT------ 123 A+QIT+ + A + E +SH C + S + ++ + L Sbjct: 82 AEQITLKQISAALQ-----IEFVSSHWRSGSQNLDCMVASGMADVMDRLYSDLDALCQKR 136 Query: 124 --QYSIECLVR 132 +I + Sbjct: 137 LEGITIADVAA 147 >gi|152971498|ref|YP_001336607.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|169303064|ref|YP_001693239.1| transcriptional regulator [Escherichia coli] gi|262043875|ref|ZP_06016963.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330013154|ref|ZP_08307575.1| transcriptional regulator [Klebsiella sp. MS 92-3] gi|150956347|gb|ABR78377.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|167614014|gb|ABZ89637.1| transcriptional regulator [Escherichia coli] gi|259038729|gb|EEW39912.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533580|gb|EGF60298.1| transcriptional regulator [Klebsiella sp. MS 92-3] Length = 159 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Query: 8 DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY +++++ A + + +A + F+ K++ PL + GI+ + GR Sbjct: 3 DYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119 G + L RPAD+IT+ D+ + E + C + +C SV +A A Sbjct: 63 GSIHLGRPADKITLRDIYLSVIEDKKLWASRPDVPARCVVSANACWYFKSVADEAEQASL 122 Query: 120 DVLTQYSIE 128 +VL ++++ Sbjct: 123 NVLARHTVA 131 >gi|254446472|ref|ZP_05059948.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] gi|198260780|gb|EDY85088.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium DG1235] Length = 149 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 4/127 (3%) Query: 5 KRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 K +Y I L Y A + + IA A +S + K++ + AG+V G Sbjct: 6 KMANYAIASLSYLAANYEKEGFKANSQTIATARNLSRPLVGKLMSQMSTAGLVNGTPGPG 65 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 GG L R IT+L++V+ E+ C C C L + Sbjct: 66 GGFFLSRAPKDITLLEIVRLFEKVEEALMC-PFGPGWCGNGDPCPFHYELEDKRDEMMTW 124 Query: 122 LTQYSIE 128 L + ++E Sbjct: 125 LAETNLE 131 >gi|315659054|ref|ZP_07911921.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315496178|gb|EFU84506.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 140 Score = 72.7 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + A H D +++AE C++ + L +++ L + ++T+RG+ GG + + Sbjct: 8 AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--FFDVLTQY 125 IT+ ++ +++ S DC + T + + Sbjct: 68 TAAITLAELYSQFVLDKTHTQRLFTGSIDSDCIISNQIATTMSHYREQEQQLILNFYRDK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIDDVIED 135 >gi|170017279|ref|YP_001728198.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804136|gb|ACA82754.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 143 Score = 72.7 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + I +L Y I IA + + + +++ L AG++ T +G Sbjct: 1 MRFSYKLSDAIHILTYIDIFQGNDLSSQAIAASIGSNASVVRNLMRDLRVAGLLVTKQGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L + + I++ DV A + +C + L + + A Sbjct: 61 AA-PILAKSPEDISLYDVYIAINMVHTLLHIDPKTNPNCLVGSRIQDTLNNFYTEVEVAA 119 Query: 119 FDVLTQYSIECLVRN 133 ++ + S+ + ++ Sbjct: 120 YEKMRHISLADVTQH 134 >gi|70732916|ref|YP_262687.1| rrf2 family protein [Pseudomonas fluorescens Pf-5] gi|68347215|gb|AAY94821.1| rrf2 family protein, putative [Pseudomonas fluorescens Pf-5] Length = 146 Score = 72.7 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L + A + R IA+ + ++ +VKA I+++ RG GG+ L RPA Sbjct: 13 ILSFVAANAPQRLRTETIAKWVKTHPTRVRSLVSLMVKANILKSWRGAHGGLTLARPASD 72 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-----LTQYSI 127 IT+ +V A +ES +AE + + C + V + A + L + Sbjct: 73 ITLREVYDAVQESSLIAEKIDNPFSG--MEEHCKVFDVFTRLF-AMLEANMRLDLGTITA 129 Query: 128 ECL 130 + L Sbjct: 130 DQL 132 >gi|108763227|ref|YP_629895.1| hypothetical protein MXAN_1643 [Myxococcus xanthus DK 1622] gi|108467107|gb|ABF92292.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 151 Score = 72.7 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 7/134 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M R + VL++ + + + + + + L +AGI+ +V+G Sbjct: 1 MRRDSRLSVALHVLLHM-EDMGPVVTSEAMGRLLKANPVVVRRTMAGLREAGILTSVKGH 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--- 117 GG L R D +T+ DV +A + C + + + L KAL+ Sbjct: 60 GGGWSLARTLDTVTLGDVYEALGTPGLFSIGPHDESPGCLVEQA--VNDALGKALDQAAA 117 Query: 118 -FFDVLTQYSIECL 130 L S+ L Sbjct: 118 LLMQHLRSTSVADL 131 >gi|306820009|ref|ZP_07453659.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551957|gb|EFM39898.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 141 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L+Y D +A++ + + KI+ L A I+E+ +G++G + Sbjct: 3 TKFSIALHLLIYI-EETDKLVTSELLAQSVGTNASHIRKIIALLKDADIIESQQGKKG-M 60 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122 L A ++T+ V A + + DCP+ + L + ++ L Sbjct: 61 MLKIKASELTLDKVYFAIYPEKELLHIHDTANQDCPVGANIRQALLPIFEESERQLVLNL 120 Query: 123 TQYSIECLVRN 133 +++ L+ + Sbjct: 121 KSKTLKSLIDD 131 >gi|291617389|ref|YP_003520131.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103] gi|291152419|gb|ADD77003.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103] Length = 183 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 4 TKRTDY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 TK DY +++++ A + + +A + F+ K++ PL + GI+ + Sbjct: 18 TKMLDYRFPTALQMVLSVAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVST 77 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKAL 115 GR G + L RPA IT+ D+ + + + C + + C S+ +A Sbjct: 78 LGRTGSIHLGRPAADITLRDIYVSVTDDKKLWAARPDVAPRCLVSANLCWYFKSIAEEAE 137 Query: 116 NAFFDVLTQYSIEC 129 A VL + ++ Sbjct: 138 QASLAVLAKRTVAD 151 >gi|289551542|ref|YP_003472446.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis HKU09-01] gi|289181073|gb|ADC88318.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis HKU09-01] Length = 141 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + A H D +++AE C++ + L +++ L + ++T+RG+ GG + + Sbjct: 9 AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 68 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--FFDVLTQY 125 IT+ ++ +++ S DC + T + + Sbjct: 69 TAAITLAELYSQFVLDKTHTQRLFTGSIDSDCIISNQIATTMSHYREQEQQLILNFYRDK 128 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 129 TIDDVIED 136 >gi|259046428|ref|ZP_05736829.1| Rrf2 family protein [Granulicatella adiacens ATCC 49175] gi|259036973|gb|EEW38228.1| Rrf2 family protein [Granulicatella adiacens ATCC 49175] Length = 138 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y AIH+D ++A C + + K++ VK G V T G++GG + Sbjct: 9 IHCLTYLAIHHDNRYSSKELAFNACSNPAIVRKLMSLAVKKGWVSTAAGKQGGYQWISDP 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV----LTQYS 126 +I + D+ E + + F LV S + ++ K Q + Sbjct: 69 SKIKLGDIFILVSEDARLEKTFKEASDPSCLVSS-RMGKIMGKLQEEQIQEQIRFYNQKT 127 Query: 127 IECLVRN 133 I+ ++ Sbjct: 128 IQDMIDK 134 >gi|23006957|ref|ZP_00049037.1| COG1959: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 73 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M LT+ TDY +R L+Y + + I++IA A ISE L K++ L +G Sbjct: 1 MRLTRYTDYALRTLIYVGLREPRQSSIAEIAAAYGISESHLTKVVHQLGGSGW 53 >gi|304397746|ref|ZP_07379623.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] gi|304354918|gb|EFM19288.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB] Length = 164 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A + + +A + F+ K++ PL + GI+ + GR G + L RPA +IT Sbjct: 16 VAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEIT 75 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIEC 129 + D+ + E + C + + C S+ +A A DVL + ++ Sbjct: 76 LRDIYVSVIEDKKIWAARPDVAPRCLVSANLCWYFKSIADEAEQASLDVLAKRTVAD 132 >gi|319790806|ref|YP_004152446.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus EPS] gi|315593269|gb|ADU34335.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus EPS] Length = 153 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D P +A A + + + +I+ L +AG V + +G GG L Sbjct: 11 LHVLLHMA-EMDGPITSESLAAAMHTNPVVVRRIMAGLRQAGFVSSAKGHGGGWVLSCSL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 ++T+ D+ A +A + C + + L A ++ Sbjct: 70 ARVTLGDIHNAVGAPALLAMGNRTESPGCIVEQAVNAALDDAFDAAEALLLKRFNSITLA 129 Query: 129 CLVRN 133 L ++ Sbjct: 130 DLSKD 134 >gi|298291308|ref|YP_003693247.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296927819|gb|ADH88628.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 154 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A D P +A A + + + +++ L G V++ +G GG + Sbjct: 11 LHVLLHMA-ERDGPTTSDMLARAMDTNPVVIRRVMAGLRDRGYVQSEKGHGGGWTIACDL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 IT+ D+ +A +A + C + + L +A Q S+ Sbjct: 70 GAITLRDIYEALGRPELLAMGNRTDAPGCLIEQAVNAALGETFDEAEALLLSRFGQISLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALSAD 134 >gi|260770102|ref|ZP_05879035.1| rrf2 family transcriptional regulator group III [Vibrio furnissii CIP 102972] gi|260615440|gb|EEX40626.1| rrf2 family transcriptional regulator group III [Vibrio furnissii CIP 102972] Length = 117 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 Q A + + + + + L AG V + +G+ GG L ++T+LD+ +A E Sbjct: 1 MTSEQFATMLGTNAVVIRRTMAGLRDAGYVTSTKGQGGGWTLSCDLQRVTLLDIYQAVGE 60 Query: 85 SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + F + +C + + L VL +A +Q S+ L + Sbjct: 61 PKIFSIGFDNVNPNCVVEKAVNASLRDVLHEAEVLLLTRFSQISLADLSQE 111 >gi|288933998|ref|YP_003438057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Klebsiella variicola At-22] gi|290510944|ref|ZP_06550313.1| transcriptional regulator [Klebsiella sp. 1_1_55] gi|288888727|gb|ADC57045.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola At-22] gi|289775937|gb|EFD83936.1| transcriptional regulator [Klebsiella sp. 1_1_55] Length = 159 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Query: 8 DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY +++++ A + + +A + F+ K++ PL + GI+ + GR Sbjct: 3 DYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119 G + L RPAD+IT+ D+ + E + C + +C S+ +A A Sbjct: 63 GSIHLGRPADKITLRDIYLSVIEDKKLWASRPEVPARCVVSANACWYFKSIADEAEQASL 122 Query: 120 DVLTQYSIE 128 +VL ++++ Sbjct: 123 NVLARHTVA 131 >gi|32266962|ref|NP_860994.1| hypothetical protein HH1463 [Helicobacter hepaticus ATCC 51449] gi|32263014|gb|AAP78060.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 161 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 24/160 (15%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-------------YPNRISQIAEACCISELFLFKILQP 47 M + R I + + N+ +A++ ++ + + IL Sbjct: 1 MQIPSRFSIAIHICLCLEFFNEDSGFNANTDKTHCKKMTSEALADSVGVNSVIIRNILAQ 60 Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--------ESFFVAECFASHKIDC 99 L AG++ RG GG L + +I++LD+ A + + + A+ C Sbjct: 61 LKSAGLINVARG-SGGSVLSKKPQEISLLDIFNAVQSMGGKETNGKNRLFKFHANPNELC 119 Query: 100 PLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 PL + L S KA L++ + L++ ++ Sbjct: 120 PLGKNIHLILDSSFEKAQITLESYLSKVKLSNLLKKLQNL 159 >gi|317047988|ref|YP_004115636.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b] gi|316949605|gb|ADU69080.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b] Length = 161 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A + + +A + F+ K++ PL + GI+ + GR G + L RPA +IT Sbjct: 16 VAMAEQLGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPASEIT 75 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIEC 129 + D+ + E + C + + C S+ +A A +VL + ++ Sbjct: 76 LRDIYTSVIEDKKLWASRPDVAPRCLVSANLCWYFKSIADEAEQASLNVLEKRTVAD 132 >gi|104773289|ref|YP_618269.1| putative transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513261|ref|YP_812167.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422370|emb|CAI96892.1| Putative transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092576|gb|ABJ57729.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 136 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 3/133 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L Y I D IA + + + ++ L KAG ++T +G L + Sbjct: 4 AVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGFLKTKQG-SAEPELAKK 62 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127 ++I++ D+ A + + CP+ G+ L + A F + + S+ Sbjct: 63 PEEISLYDIFAAVGMEHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAAFAKMREISL 122 Query: 128 ECLVRNRSSIKKI 140 +V ++ Sbjct: 123 REIVDQIKEEGQL 135 >gi|328958341|ref|YP_004375727.1| hypothetical protein CAR_c20540 [Carnobacterium sp. 17-4] gi|328674665|gb|AEB30711.1| hypothetical protein CAR_c20540 [Carnobacterium sp. 17-4] Length = 144 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y HN+ +AE C + + + ++L G+V+T +G GG L Sbjct: 7 AVHGLVYLG-HNNSSFTSETLAENICTNPVRVRRVLSKCRIKGLVQTKKGVHGGYFLTDN 65 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124 + IT+ DV +A + + + C ++S + +A++ + L + Sbjct: 66 LEAITLKDVYEAIQIPIIQNTWHSGDVNE-----QCMISSGMSEAMDDLYVELNKDAVAK 120 Query: 125 ---YSIECL 130 +++ + Sbjct: 121 LATITLKDM 129 >gi|188533841|ref|YP_001907638.1| Transcription regulator [Erwinia tasmaniensis Et1/99] gi|188028883|emb|CAO96745.1| Transcription regulator [Erwinia tasmaniensis Et1/99] Length = 144 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A +A+ + F+ K++ PL + GI+ + GR G +RL RPA QIT+ D Sbjct: 10 AQSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIVSTLGRSGSIRLGRPAQQITLCD 69 Query: 78 VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133 + + E + + C + +C + ++A A DVL + ++ + + Sbjct: 70 IYLSVIEDKPLMAGRPEVEPCCVVSANACWYFKELAKEAEQASLDVLAKRTVAEALHD 127 >gi|298290312|ref|YP_003692251.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Starkeya novella DSM 506] gi|296926823|gb|ADH87632.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM 506] Length = 147 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ ++ I ++ A+H P +A + L +LQ LV AG+++ VRG Sbjct: 3 RLSDKSLLAIAAVVDVALHARGMPVAAKALAARHDLPPRHLEPVLQALVHAGVLKGVRGP 62 Query: 61 RGGVRLCRPADQIT 74 RGG L R +IT Sbjct: 63 RGGYELARERRRIT 76 >gi|259502086|ref|ZP_05744988.1| Rrf2 family protein [Lactobacillus antri DSM 16041] gi|259169899|gb|EEW54394.1| Rrf2 family protein [Lactobacillus antri DSM 16041] Length = 143 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L+Y I N S IAE+ + + +++ +VKAGI+E G+ Sbjct: 1 MKYSHRLSDAVHILVYLEILGS--NSSSAIAESVNSNPSLIRRLIAHMVKAGILE-RSGQ 57 Query: 61 RG--GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKAL 115 G ++L RPAD+I++LD+ +A E + + C L + ++ Sbjct: 58 HGEITIKLTRPADRISLLDIYQAVESHQEFLD-VDQEINRLHPLSRCMPEVLGAAYQRVQ 116 Query: 116 NAFFDVLTQYSIECLVRNRSS 136 A + Q S+ +V + Sbjct: 117 QAAEQEMAQISLAAVVDQARA 137 >gi|311108691|ref|YP_003981544.1| HTH domain-containing protein 2 [Achromobacter xylosoxidans A8] gi|310763380|gb|ADP18829.1| HTH domain protein 2 [Achromobacter xylosoxidans A8] Length = 141 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ + +A+ +E+ + + + L AG+V + GR GG L R Sbjct: 11 LHVLIHMHLRGGT-TTSGTLAKMLHTNEVVVRRSMAALRAAGMVTSTGGRNGGWVLARGL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSIE 128 + IT DV +A A A CP + + LR+ +A L S+ Sbjct: 70 ETITARDVHEAIAHGTVFAIGPADDNPACPVERTANQLVADSLREGEHALLQRLGAVSLS 129 Query: 129 CLVRNRSSIKK 139 L +S ++ Sbjct: 130 ELAAEIASREE 140 >gi|308186770|ref|YP_003930901.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] gi|308057280|gb|ADO09452.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1] Length = 164 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A + + +A + F+ K++ PL + GI+ + GR G + L RPA IT Sbjct: 16 VAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAADIT 75 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIEC 129 + D+ + E + C + + C S+ +A A DVL + ++ Sbjct: 76 LRDIYVSVIEDKKIWAARPDVAPRCLVSANLCWYFKSIADEAEQASLDVLAKRTVAD 132 >gi|317969720|ref|ZP_07971110.1| transcriptional regulator [Synechococcus sp. CB0205] Length = 144 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 +S+IAEA + L ++L L +A +VE RGR+GG RL RPA+ I + +V+KA Sbjct: 24 CSVSEIAEAQGLPAPMLEQLLLQLRRAALVEAKRGRQGGYRLSRPAEAIPVGEVLKAVGA 83 Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142 + D L S+ R+ +A L Q +++ L+ + S ++ + Sbjct: 84 PLVL-----DAPGDSSRAEQDVLKSMGRRLQSALDRELKQLTLQELLFDLQSWQECLS 136 >gi|227539595|ref|ZP_03969644.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227240508|gb|EEI90523.1| Rrf2 family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 138 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ + D IA + ++ + + K ++ L +A +V + G+ GGVR+ Sbjct: 10 ATHIIALLMLERDAWLSSDYIAGSINVNPVVVRKEIRKLKEAQLVISKEGKNGGVRIAED 69 Query: 70 ADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124 ++ T+ DV KAT +E + + +CP+ + L+ V L Q Sbjct: 70 INKKTLADVYKATLASDEKGK----YNNPNPNCPVGKNINSYLSIVYNDIEEQHITYLNQ 125 Query: 125 YSIECL 130 SI+ L Sbjct: 126 ISIQDL 131 >gi|77745347|gb|ABB02574.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 134 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 ++ + IA++ + + +++ L AG++ T +G RL + +I + Sbjct: 1 MHVYQNGDLSSKAIADSIESNPSVVRQLMSDLRTAGLIVTRKGAA-EPRLAKKPREINLF 59 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 D+ +A + + C + G+ L + A F+ + Q S+ ++ + Sbjct: 60 DIYQAINMDHDLLHVDPKTNLKCIVGGNIQASLEKYYDQIQAAAFNEMKQISLADVIDD 118 >gi|304322284|ref|YP_003855927.1| hypothetical protein PB2503_00070 [Parvularcula bermudensis HTCC2503] gi|303301186|gb|ADM10785.1| hypothetical protein PB2503_00070 [Parvularcula bermudensis HTCC2503] Length = 154 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL++ A D P ++A+A + + + +++ L G+V + +G GG L Sbjct: 10 ALHVLLHLA-EADAPMTSERLAKAMATNPVVVRRVMAGLRDEGLVASEKGHGGGWTLTCN 68 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSI 127 + T+ DV +A + C + + L L A D ++ Sbjct: 69 LSKTTLRDVYQALGHPPLFGMGHRNEASQCAVEQAVNAALGDALDAAEAVLLDRFGNVTL 128 Query: 128 ECLVRN 133 L R+ Sbjct: 129 ADLSRD 134 >gi|329927530|ref|ZP_08281715.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] gi|328938399|gb|EGG34788.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5] Length = 149 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 13/130 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ L+ H+ IA + ++L+ L +A ++E+ GR GG RL + Sbjct: 26 AVQALVTLERHSGK-CSSGDIASYLHSESTLIRRVLKTLAQADLIESREGRDGGYRLRKN 84 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLRKALNAFFDVL 122 A I++ +V + ++E G C +L + + +L Sbjct: 85 ARDISLAEVYSILQVHSSISESMLDAA-----AGHCFAEEIKESFAGILSEIEESTLKIL 139 Query: 123 TQYSIECLVR 132 +I + + Sbjct: 140 ESRTIADIAQ 149 >gi|114798919|ref|YP_761419.1| hypothetical protein HNE_2740 [Hyphomonas neptunium ATCC 15444] gi|114739093|gb|ABI77218.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 147 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + +++ A D P ++A + + + + + L +AG V + RG GG R+ Sbjct: 11 LHAILHMAEQ-DRPMTSDELAVCMRTNPVVVRRTMGLLREAGFVSSERGHSGGWRIKADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 ++T+ + +A E A +C + S L S +A + ++ Sbjct: 70 ARLTLRQLHEALGEPTVFAIGNRHETPECLVEQSVNSVLDSAFAEAEALLLERFASVTLA 129 Query: 129 CLVRN 133 L Sbjct: 130 DLAAE 134 >gi|296111337|ref|YP_003621719.1| hypothetical protein LKI_06050 [Leuconostoc kimchii IMSNU 11154] gi|295832869|gb|ADG40750.1| hypothetical protein LKI_06050 [Leuconostoc kimchii IMSNU 11154] Length = 137 Score = 70.7 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ + I +L Y I IA + + + ++ L A ++ T +G Sbjct: 1 MGLSYKLSDAIHILAYIEILKKQDLSSKSIAASIGANASVVRNLMLDLRSANLLTTHQGV 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 +L + D I+I DV A + +C + G L +A Sbjct: 61 A-TPQLAKSPDDISIYDVYCAISMPHNLLNIDPKTNPNCLVGGHIQETLNHFYSDIESAA 119 Query: 119 FDVLTQYSIECLVRN 133 +D + S+ ++++ Sbjct: 120 YDQMKTISLAHVIQD 134 >gi|227514658|ref|ZP_03944707.1| possible transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086967|gb|EEI22279.1| possible transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 151 Score = 70.7 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R I ++++ A D + IA++ ++ + +I+ L + I+++V G Sbjct: 1 MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 60 Query: 60 ---RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114 + L + ++ + + +A + + +C + L + + Sbjct: 61 HVCPQ----LVKDPAELDLATIYQAVDGG-DLLHFNNETNTECRIGEGMPDALDLIFGQV 115 Query: 115 LNAFFDVLTQYSIECLVRN 133 A L YSI ++ Sbjct: 116 QRAALAKLATYSIRDVLNQ 134 >gi|261407465|ref|YP_003243706.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283928|gb|ACX65899.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. Y412MC10] Length = 149 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 13/130 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ L+ H+ IA + ++L+ L +A ++E+ GR GG RL + Sbjct: 26 AVQALVTLERHSGK-CSSGDIASYLHSESTLIRRVLKTLAQADLIESREGRDGGYRLRKN 84 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLRKALNAFFDVL 122 A I++ +V + +++ G C +L + + +L Sbjct: 85 ARDISLAEVYSILQVHSSISDSMLDAA-----AGHCFAEEIKESFAGILSEIEESTLKIL 139 Query: 123 TQYSIECLVR 132 +I + + Sbjct: 140 ESRTIADIAQ 149 >gi|326316721|ref|YP_004234393.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373557|gb|ADX45826.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 147 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A H + P +A+ + + + + L AGIV + +G GG R+ Sbjct: 11 LHALLHMAEH-EGPMTSDALAQCLGTHPVVVRRTMGYLRDAGIVTSDKGHGGGWRIHADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ + +A E A + +C + S L +A ++ ++ Sbjct: 70 GTVTLRQLHEALGEPAMFAIGNRNESPECLVKQSVNAALEGTFAEAEALLLKRFSEITLA 129 Query: 129 CL 130 L Sbjct: 130 DL 131 >gi|329891097|ref|ZP_08269440.1| transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] gi|328846398|gb|EGF95962.1| transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] Length = 407 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 11 IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + L++ A H P +A + + + + + L + G+V + +G GG RL Sbjct: 11 LHALLHMAEHEQRCGRPMTSDMLATCLSTNPVVVRRTMAGLREQGLVVSEKGHGGGWRLA 70 Query: 68 RPADQITILDVVKATEESFFV 88 RP + +T+ V A E + Sbjct: 71 RPLEAVTLGQVHAALGEPGLL 91 >gi|184155248|ref|YP_001843588.1| hypothetical protein LAF_0772 [Lactobacillus fermentum IFO 3956] gi|183226592|dbj|BAG27108.1| hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 158 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 11/139 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R I ++++ A D + IA++ ++ + +I+ L + I+++V G Sbjct: 8 MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 67 Query: 60 ---RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114 + L + ++ + + +A + + +C + L + + Sbjct: 68 HVCPQ----LVKDPAELDLATIYQAVDGG-DLLHFNNETNTECRIGEGMPDALDLIFGQV 122 Query: 115 LNAFFDVLTQYSIECLVRN 133 A L YSI ++ Sbjct: 123 QRAALAKLATYSIRDVLNQ 141 >gi|323692303|ref|ZP_08106542.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323503628|gb|EGB19451.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 141 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 14/136 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ + H +A+ C + + K++ L KA +++T G G Sbjct: 1 MTSEFTIAVHALVFLS-HKGTYYSSEGLADNVCTNAARIRKVMAKLKKADLIKTKEGADG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G R A ++ + + A + F A + C ++S + + +D L Sbjct: 60 GYFFHREAREVDLQMIADAFDTPFVAASWKSGDPD-----RDCLVSSGMAGVMTEIYDTL 114 Query: 123 T--------QYSIECL 130 Q +I + Sbjct: 115 DQECRKRLKQITIYDI 130 >gi|323487467|ref|ZP_08092762.1| hypothetical protein HMPREF9474_04513 [Clostridium symbiosum WAL-14163] gi|323399236|gb|EGA91639.1| hypothetical protein HMPREF9474_04513 [Clostridium symbiosum WAL-14163] Length = 141 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 14/136 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ + H +A+ C + + K++ L KA +++T G G Sbjct: 1 MTSEFTIAVHALVFLS-HKGTYYSSEGLADNVCTNAARIRKVMAKLKKADLIKTKEGADG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G R A ++ + + A + F A + C ++S + + +D L Sbjct: 60 GYFFHREAREVDLQMIADALDTPFVAASWKSGDPD-----RDCLVSSGMAGVMTEIYDTL 114 Query: 123 TQ--------YSIECL 130 Q +I + Sbjct: 115 DQECRKRLKLITIYDI 130 >gi|325928913|ref|ZP_08190075.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] gi|325540709|gb|EGD12289.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans 91-118] Length = 157 Score = 70.4 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A P QIA + + + + + L AG V++ RG Sbjct: 6 RLSRM----LHVLLHMARSP-QPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHN 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG ++ Q+T+LDV +A A C Sbjct: 61 GGWQIGCDLAQVTLLDVHRAVGGPHLFAIGADHPNPQC 98 >gi|283478404|emb|CAY74320.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM 12163] gi|310767659|gb|ADP12609.1| HTH-type transcriptional regulator iscR [Erwinia sp. Ejp617] Length = 152 Score = 70.4 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A +A+ + F+ K++ PL + GI+ + GR G +RL RPA IT+ D Sbjct: 19 AHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCD 78 Query: 78 VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133 + + E + + C + +C + ++A A DVL + ++ + + Sbjct: 79 IYLSVIEDKPLMAGRPEAEPCCIVSANACWYFKQLAKEAEQASLDVLAKRTVADALHD 136 >gi|310829321|ref|YP_003961678.1| transcriptional regulator family protein [Eubacterium limosum KIST612] gi|308741055|gb|ADO38715.1| transcriptional regulator family protein [Eubacterium limosum KIST612] Length = 138 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 13/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ H +AE C + + K++ L KAG+V+T G GG Sbjct: 8 AVHALVFLNHHQGDILSSEALAENVCTNPARIRKVMAKLKKAGLVKTKSGSEGGYYFDLD 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121 + + + +A + C + S + ++ F Sbjct: 68 PFSVNLRLICEAIGGRVVSTSWRSGDS-----EMDCLIASGMADIMDEIFMSLDAAGKKE 122 Query: 122 LTQYSIECL 130 L + ++ + Sbjct: 123 LEKTTVGDI 131 >gi|206577940|ref|YP_002237025.1| putative transcriptional regulator [Klebsiella pneumoniae 342] gi|206566998|gb|ACI08774.1| putative transcriptional regulator [Klebsiella pneumoniae 342] Length = 159 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Query: 8 DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY +++++ A + + +A + F+ K++ PL + GI+ + GR Sbjct: 3 DYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEATPSFIRKLMVPLTRDGIIVSTLGRN 62 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119 G + L RPAD+IT+ D+ + E + C + +C S+ +A A Sbjct: 63 GSIHLGRPADKITLRDIYLSVIEDKKLWASRPEVPARCVVSANACWYFKSIADEAEQASL 122 Query: 120 DVLTQYSIE 128 +VL ++++ Sbjct: 123 NVLARHTVA 131 >gi|78046202|ref|YP_362377.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034632|emb|CAJ22277.1| putative transcriptional regulator, Rrf2 family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 157 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ + VL++ A P QIA + + + + + L AG V++ RG Sbjct: 6 RLSRM----LHVLLHMARSP-QPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHN 60 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 GG ++ Q+T+LDV +A A C Sbjct: 61 GGWQIGCDLAQVTLLDVHRAVGGPHLFAIGADHPNPQC 98 >gi|228922119|ref|ZP_04085429.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940467|ref|ZP_04103036.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953676|ref|ZP_04115716.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959598|ref|ZP_04121279.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228979946|ref|ZP_04140265.1| Rrf2 [Bacillus thuringiensis Bt407] gi|229047069|ref|ZP_04192691.1| Rrf2 [Bacillus cereus AH676] gi|229070848|ref|ZP_04204076.1| Rrf2 [Bacillus cereus F65185] gi|229080611|ref|ZP_04213131.1| Rrf2 [Bacillus cereus Rock4-2] gi|229110826|ref|ZP_04240389.1| Rrf2 [Bacillus cereus Rock1-15] gi|229128677|ref|ZP_04257655.1| Rrf2 [Bacillus cereus BDRD-Cer4] gi|229145982|ref|ZP_04274361.1| Rrf2 [Bacillus cereus BDRD-ST24] gi|229151583|ref|ZP_04279785.1| Rrf2 [Bacillus cereus m1550] gi|229179684|ref|ZP_04307034.1| Rrf2 [Bacillus cereus 172560W] gi|229191500|ref|ZP_04318483.1| Rrf2 [Bacillus cereus ATCC 10876] gi|228591980|gb|EEK49816.1| Rrf2 [Bacillus cereus ATCC 10876] gi|228603790|gb|EEK61261.1| Rrf2 [Bacillus cereus 172560W] gi|228631827|gb|EEK88454.1| Rrf2 [Bacillus cereus m1550] gi|228637590|gb|EEK94041.1| Rrf2 [Bacillus cereus BDRD-ST24] gi|228654870|gb|EEL10730.1| Rrf2 [Bacillus cereus BDRD-Cer4] gi|228672705|gb|EEL27986.1| Rrf2 [Bacillus cereus Rock1-15] gi|228702712|gb|EEL55178.1| Rrf2 [Bacillus cereus Rock4-2] gi|228712238|gb|EEL64185.1| Rrf2 [Bacillus cereus F65185] gi|228724258|gb|EEL75593.1| Rrf2 [Bacillus cereus AH676] gi|228779785|gb|EEM28033.1| Rrf2 [Bacillus thuringiensis Bt407] gi|228800090|gb|EEM47026.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805910|gb|EEM52489.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228819232|gb|EEM65288.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837535|gb|EEM82866.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 116 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 17/117 (14%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R D+I + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132 + +C S+ C + S +RK L A F + L Y+++ +V Sbjct: 62 GALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|260662247|ref|ZP_05863143.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260553630|gb|EEX26522.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 151 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 11/136 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + R I ++++ A D + IA++ ++ + +I+ L + I+++V G Sbjct: 1 MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 60 Query: 60 ---RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114 + L + ++ + + +A + + +C + L + + Sbjct: 61 HVCPQ----LVKDPAELDLATIYQAVDGG-DLLHFNNETNTECRIGEGMPDALDLIFGQV 115 Query: 115 LNAFFDVLTQYSIECL 130 A L YSI + Sbjct: 116 QRAALAKLATYSIRDV 131 >gi|332297044|ref|YP_004438966.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] gi|332180147|gb|AEE15835.1| transcriptional regulator, BadM/Rrf2 family [Treponema brennaborense DSM 12168] Length = 140 Score = 70.0 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y + H + +AE C + + + K+L L A +VET G GG R Sbjct: 8 AVHALVYLS-HKNGVLSSDALAENICTNPVRIRKVLSKLAGAALVETKEGADGGYRFTGD 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF--------FDV 121 A +T+ DV F V + + C ++S + A++ + Sbjct: 67 AAHVTLADVAGILNVDFTVMNWRSG-----SIDKPCLISSGMAAAMDTIMADLNACCLER 121 Query: 122 LTQYSIECL 130 L + ++ + Sbjct: 122 LRRITVADI 130 >gi|325916311|ref|ZP_08178589.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas vesicatoria ATCC 35937] gi|325537482|gb|EGD09200.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas vesicatoria ATCC 35937] Length = 150 Score = 70.0 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 15/135 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A + P QIA + + + + + L AG V++ +G GG ++ Sbjct: 2 LHVLLHMA-RSAQPMTSEQIASMLATNAVVVRRTMAGLRSAGYVQSSKGHNGGWQIACDL 60 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR--------KALNAFFDVL 122 Q+T+LDV +A + A H CG+ V+ A L Sbjct: 61 AQVTLLDVHRAVGGP-HLFAIGADHPN-----PQCGVERVVNAAIADALADAEALLLQRL 114 Query: 123 TQYSIECLVRNRSSI 137 ++ L S+ Sbjct: 115 GTVTLAALASEFDSL 129 >gi|251798939|ref|YP_003013670.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Paenibacillus sp. JDR-2] gi|247546565|gb|ACT03584.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp. JDR-2] Length = 166 Score = 70.0 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ L+ + + +++A L ++L L + ++ET GR GG RL R Sbjct: 31 SLQALVVLSRKPNA-CTSAELAGHMKSEATMLRRVLAKLAREQLLETREGRDGGYRLKRA 89 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFFDVLTQYSI 127 + IT+ DV A + + + + +VL Q +I Sbjct: 90 PETITLADVYLALRVGEPLCSGMLDTTGIHDFGQEMRVAFMEITDEVERRTLEVLRQVTI 149 Query: 128 ECLVRNRSSIKKI 140 L ++K++ Sbjct: 150 AQLSERICTLKRM 162 >gi|188583718|ref|YP_001927163.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi BJ001] gi|179347216|gb|ACB82628.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium populi BJ001] Length = 154 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A + P +A + + + +I+ L G V + +G GG R+ Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGMMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWRIACDV 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ D+ +A A S C + + + + R+A L + ++ Sbjct: 70 QAVTLRDIYEALGAPEIFAMGNRSEAPGCLVEQAVNAAMDASFREAEALLMAQLGRITLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALSAD 134 >gi|259908456|ref|YP_002648812.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96] gi|224964078|emb|CAX55584.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96] Length = 143 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A +A+ + F+ K++ PL + GI+ + GR G +RL RPA IT+ D Sbjct: 10 AHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCD 69 Query: 78 VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133 + + E + + C + +C + ++A A DVL + ++ + + Sbjct: 70 IYLSVIEDKPLMAGRPEAEPCCIVSANACWYFKQLAKEAEQASLDVLAKRTVADALHD 127 >gi|228966286|ref|ZP_04127344.1| Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228793419|gb|EEM40964.1| Rrf2 [Bacillus thuringiensis serovar sotto str. T04001] Length = 116 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 19/118 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R D+I + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132 + CP C + S +RK L A F + L Y+++ +V Sbjct: 62 GALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|292488270|ref|YP_003531152.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|292899465|ref|YP_003538834.1| transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291199313|emb|CBJ46430.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291553699|emb|CBA20744.1| HTH-type transcriptional regulator iscR [Erwinia amylovora CFBP1430] gi|312172409|emb|CBX80666.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC BAA-2158] Length = 152 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A +A+ + F+ K++ PL + GI+ + GR G +RL RPA IT+ D Sbjct: 19 AHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLGRPAQLITLCD 78 Query: 78 VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133 + + E + + C + +C + ++A A DVL + ++ + + Sbjct: 79 IYLSVIEDKPLMAGRPEVEPCCIVSANACWYFKQLAKEAEQASLDVLAKRTVADALHD 136 >gi|307244538|ref|ZP_07526643.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678] gi|306492065|gb|EFM64113.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678] Length = 141 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L+Y +A++ + ++ KI+ L A I+E+ +G++G + Sbjct: 3 TKFSIALHILVYI-EETKDIVTSELLAKSVGTNASYIRKIIILLKSANIIESKQGKKG-M 60 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122 L +D++T+ V A + + +CP+ + L + ++ L Sbjct: 61 SLKIASDELTLDMVYFAVYPEKELLHIHDTSNQECPVGENIREALLPIFEESEKQLILNL 120 Query: 123 TQYSIECLVRN 133 + +++ LV N Sbjct: 121 RKETLKSLVEN 131 >gi|329298886|ref|ZP_08256222.1| BadM/Rrf2 family transcriptional regulator [Plautia stali symbiont] Length = 140 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 + + +A + F+ K++ PL + GI+ + GR G + L RPA +IT+ D+ + Sbjct: 2 GKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDIYTS 61 Query: 82 TEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 E + C + + C S+ +A A VL ++ + ++ Sbjct: 62 VIEDKRLWASRPDVAPRCLVSANLCWYFKSIAEQAEEASLKVLETRTVADALNELKRRRR 121 Query: 140 IF 141 + Sbjct: 122 VL 123 >gi|294784028|ref|ZP_06749350.1| Rrf2 family protein [Fusobacterium sp. 1_1_41FAA] gi|294479840|gb|EFG27619.1| Rrf2 family protein [Fusobacterium sp. 1_1_41FAA] Length = 146 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 7/140 (5%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + VL Y + +A++ + + KIL L A I+E+ +G++G + Sbjct: 3 TKFSIALHVLAYI-EETNNTVTSELLAKSVGTNASHIRKILALLKDADIIESQQGKKG-I 60 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122 L A+++++ + + + DCP+ + L + ++ L Sbjct: 61 VLKIKANELSLDKIYFGVYPEKELLHVHDTANPDCPVGATIKEALLPIFEESERQLILSL 120 Query: 123 TQYSIECLVRNRSSIKKIFN 142 +++ L+ + + KI+N Sbjct: 121 KSKTLKSLIED---MYKIYN 137 >gi|284048823|ref|YP_003399162.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] gi|283953044|gb|ADB47847.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus fermentans DSM 20731] Length = 169 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 64/148 (43%), Gaps = 20/148 (13%) Query: 6 RTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++D+ + L+Y + H ++AE C + + KI+ L K GI+ T G GG Sbjct: 2 KSDFIVAVHALVYLS-HRGCLASSEELAENICTNPARVRKIMGKLKKMGIITTREGHVGG 60 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 C +++++ ++ + + F + + ++ + +C ++S + ++ + L Sbjct: 61 YCPCEGLEKVSLYEIAQGMDTVFVDTKWRSGNEEN-----NCFISSGMSSVFDSLYRELD 115 Query: 124 Q--------YSIEC----LVRNRSSIKK 139 + ++ +V + S +K Sbjct: 116 RLCMDHLKGITLGDVTAQIVETQRSSRK 143 >gi|28377275|ref|NP_784167.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|308179493|ref|YP_003923621.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270106|emb|CAD63006.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|308044984|gb|ADN97527.1| transcription regulator (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 161 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%) Query: 1 MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L D+ + ++Y H D ++A++ ++ + + IL L K G + Sbjct: 6 MKL----DFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 61 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTS 109 G+ GG +L + + D+ T F P+ + LT Sbjct: 62 GKNGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTD 121 Query: 110 VLRKALNAFFDVLTQYSIECL 130 + A + Q+++ L Sbjct: 122 LFTVADRQYRAYYHQFTMADL 142 >gi|296116889|ref|ZP_06835494.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC 23769] gi|295976582|gb|EFG83355.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC 23769] Length = 143 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 13/131 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ TD+ ++ L+ + P + +I+ C +S + +LQ L G++E Sbjct: 1 MQLSLHTDHAVKFLICM-TQSGMPACVQEISGRCGLSTREVAGVLQDLHHCGLIEHATTG 59 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 G +RL + ++ I DV+++ E + P G+ + A AF D Sbjct: 60 EGFLRLRKDPARVRIGDVIRSIEAVRPMT----------PKEGA--FAPMFDMAHAAFVD 107 Query: 121 VLTQYSIECLV 131 L YS+ L Sbjct: 108 ALNDYSLSDLA 118 >gi|325570130|ref|ZP_08146030.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325156789|gb|EGC68961.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 142 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + Y I+ D IA++ + + KI+ L K+G++ T G+ L + Sbjct: 1 MCYIVIYKDTNMLSSEMIAQSVETNAANVRKIMANLKKSGLIRTTTGKP-KPYLAKDPKD 59 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 I++LD+ K+ + + + DC + + +++ L+ ++ L Q ++E Sbjct: 60 ISLLDIYKSIHGNTNLIQVDPKTNPDCIVGAN------IQEVLDGAYNEL-QVTVEE 109 >gi|302381617|ref|YP_003817440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Brevundimonas subvibrioides ATCC 15264] gi|302192245|gb|ADK99816.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas subvibrioides ATCC 15264] Length = 180 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A + + +A + + + + ++ L KAG++ T G GG L +QIT+ Sbjct: 38 AFDAAHAAPSAVLAASVPTNPVVIRRVTALLAKAGLIATRPGASGGSWLLMRPEQITLDV 97 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRS 135 V+KA + + CP+ + VL A A + L++ +I L+ + Sbjct: 98 VLKAVNGCAHLGS-APAGAKGCPVGEHIPRQVGKVLTLADRAASEALSRITIADLLAENA 156 Query: 136 S 136 Sbjct: 157 P 157 >gi|254555491|ref|YP_003061908.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] gi|254044418|gb|ACT61211.1| transcription regulator (putative) [Lactobacillus plantarum JDM1] Length = 161 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%) Query: 1 MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L D+ + ++Y H D ++A++ ++ + + IL L K G + Sbjct: 6 MKL----DFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 61 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTS 109 G+ GG +L + + D+ T F P+ + LT Sbjct: 62 GKNGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTD 121 Query: 110 VLRKALNAFFDVLTQYSIECL 130 + A + Q+++ L Sbjct: 122 LFTVADRQYRAYYHQFTMADL 142 >gi|300767015|ref|ZP_07076928.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495553|gb|EFK30708.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 156 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%) Query: 1 MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L D+ + ++Y H D ++A++ ++ + + IL L K G + Sbjct: 1 MKL----DFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 56 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTS 109 G+ GG +L + + D+ T F P+ + LT Sbjct: 57 GKNGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTD 116 Query: 110 VLRKALNAFFDVLTQYSIECL 130 + A + Q+++ L Sbjct: 117 LFTVADRQYRAYYHQFTMADL 137 >gi|293402324|ref|ZP_06646461.1| Rrf2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304171|gb|EFE45423.1| Rrf2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 148 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 54/136 (39%), Gaps = 8/136 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + Y H ++AE C++ + + K++ L G+++T +G GG Sbjct: 8 AVHAMAYLRKHP-RLISSEELAENICVNPVRVRKVMAKLKAYGLIDTKQGLSGGYSFSIQ 66 Query: 70 ADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF----FDVLTQ 124 + +T+ + A + F + + + + C + G+ V+ ++ L Sbjct: 67 NETVTLSQIYDALQMRIFHSNWRSGNAHLKCIVSS--GMAQVMDDLYETMEATCYEKLKA 124 Query: 125 YSIECLVRNRSSIKKI 140 SI +V+ + + Sbjct: 125 ISICDVVKELEQLYAL 140 >gi|229031073|ref|ZP_04187084.1| Rrf2 [Bacillus cereus AH1271] gi|228730234|gb|EEL81203.1| Rrf2 [Bacillus cereus AH1271] Length = 116 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 19/118 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R +I + ++ + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEINLWNIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132 + CP C + S +RK L A F + L Y+++ +V Sbjct: 62 GALQP---------KCPESNDQCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|116332849|ref|YP_794376.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098196|gb|ABJ63345.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis ATCC 367] Length = 154 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 6/87 (6%) Query: 1 MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L D+ + L+Y + ++A + ++ + + IL L K G +E Sbjct: 1 MRL----DFSVAVHSLLYLDENRPRKIASRELATSLQLNAVMIRNILSVLHKQGYIEGFV 56 Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85 G+ GG +L + +I + ++ T Sbjct: 57 GKNGGYQLIKDLAEINVGELYDLTIPP 83 >gi|323486594|ref|ZP_08091915.1| transcriptional regulator family protein [Clostridium symbiosum WAL-14163] gi|323692263|ref|ZP_08106504.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399975|gb|EGA92352.1| transcriptional regulator family protein [Clostridium symbiosum WAL-14163] gi|323503678|gb|EGB19499.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 143 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+ L++ H +AE C + + KIL L KAG+V T G GG + Sbjct: 8 GVHALVFL-NHKKTVVSSEMVAENVCTNPARVRKILASLKKAGLVSTKEGLDGGYQFSAD 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124 A ++ + + A +S L +C + S + L+ + L Q Sbjct: 67 ASKVNLCMIADALG-----VAFVSSSWKSGNLEKNCLIASGMAGLLDGLYQQLDQKCREE 121 Query: 125 ---YSIECL 130 +I L Sbjct: 122 LKHITIADL 130 >gi|124384456|ref|YP_001026690.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|167845078|ref|ZP_02470586.1| putative transcriptional regulator [Burkholderia pseudomallei B7210] gi|254298135|ref|ZP_04965588.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] gi|124292476|gb|ABN01745.1| Rrf2 family protein [Burkholderia mallei NCTC 10229] gi|157807552|gb|EDO84722.1| putative transcriptional regulator [Burkholderia pseudomallei 406e] Length = 141 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L ++ P IA + + + ++L L AG+ + G GG L R + Sbjct: 1 MLALLSLQEGVPLSSEVIAGSVNTNPALIRRLLSMLAAAGLTASQLGAGGGALLAREPSR 60 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130 IT+LDV +A +++ A + C + LT + A A L ++ + Sbjct: 61 ITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAMEASLATRTLADV 120 Query: 131 VRN 133 + Sbjct: 121 TAD 123 >gi|266620987|ref|ZP_06113922.1| transcriptional regulator family protein [Clostridium hathewayi DSM 13479] gi|288867368|gb|EFC99666.1| transcriptional regulator family protein [Clostridium hathewayi DSM 13479] Length = 137 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 14/136 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L+Y H +A C + + K++ L KAGI+ T G G Sbjct: 1 MTSEFAIAVHALVYL-NHRQQTVSSEALASNVCTNPARVRKVMAKLKKAGIISTKEGLEG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G + + + + V A E F A + K C + S + ++ + L Sbjct: 60 GYHFEKDSSCVNLRQVCDALEVDFVSASWKSGDK-----EMDCMIASGMAAIMDEIYADL 114 Query: 123 T--------QYSIECL 130 +I + Sbjct: 115 DELCRKRLESITIASI 130 >gi|241896629|ref|ZP_04783925.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870110|gb|EER73861.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 154 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 11/142 (7%) Query: 1 MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + + +D + +L Y AI H+ + IA + + + KI+ L A ++ET Sbjct: 1 MKHSVQFSD-AVHLLAYIAIFHDSNRLSSTDIAASIQTNPSNVRKIMCQLRDADLIETTN 59 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114 G L + I+ D+ ++ + + + + + C + G+ + VL Sbjct: 60 GIP-KPCLVKDPHDISFFDIYQSLD-HAQLFQIDTNTESKCIVGGN--IQDVLSDEYLLL 115 Query: 115 LNAFFDVLTQYSIECLVRNRSS 136 + + Q S++ +++ S Sbjct: 116 QQVVEEKMKQISLDHVLKKISQ 137 >gi|317473485|ref|ZP_07932777.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] gi|316898996|gb|EFV21018.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA] Length = 148 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ H ++A C + + KI+ L K G++ T G GG Sbjct: 8 AVHALVFL-NHKRESVSSDKLAANICTNPARVRKIMGKLKKKGLISTKEGVVGGYLFDLD 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 ++T+ DV A + F V+ + S D P C + S + ++ + L Q Sbjct: 67 PSKVTLYDVSSALDVPF-VSSSWRSGGSDLP----CLVASGMAGIMDDIYGTLDQ 116 >gi|163853446|ref|YP_001641489.1| hypothetical protein Mext_4048 [Methylobacterium extorquens PA1] gi|163665051|gb|ABY32418.1| protein of unknown function UPF0074 [Methylobacterium extorquens PA1] Length = 154 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A + P +A + + + +I+ L G V + +G GG R+ Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWRIACDF 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ D+ A A S C + + + R+A L + ++ Sbjct: 70 GAVTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALSAD 134 >gi|73661807|ref|YP_300588.1| hypothetical protein SSP0498 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494322|dbj|BAE17643.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 133 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + + I +L A + P IA++ + + KI + L +++ +G G Sbjct: 1 MNTQFSVSIHILTLLATEKE-PVSSQYIADSINSNATLVRKICRYLRDGHYIQSSQGISG 59 Query: 63 GVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119 L A++I + D+ + E+ A+ C + + L + + Sbjct: 60 -YSLSSSANEIHLGDLYQLIFSETMHFAKIHKDTNQHCHVGKNISHALDEIYSEVDTTII 118 Query: 120 DVLTQYSIECLVRN 133 + L Y+I+ ++ + Sbjct: 119 NKLNTYTIQSVIDH 132 >gi|224476118|ref|YP_002633724.1| putative transcriptional regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222420725|emb|CAL27539.1| putative transcriptional regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 154 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 15/133 (11%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L + H D ++E CI+ + L ++ LV+ VET+RG+ GG + Sbjct: 23 AVHFLAFLTKHADERFSSRALSELICINPVQLRRVTSQLVEHQYVETIRGKYGGYQANES 82 Query: 70 ADQITILDVVKA-----TEESFFVAECFASHKIDCP----LVGSCGLTSVLRKALNAFFD 120 + D+ + T+ + + + DC + + + +AL Sbjct: 83 TATANLGDLFQIFTAHSTQGRLY----TGTKESDCEISQKIEDTMKVHHAKEQAL--LKQ 136 Query: 121 VLTQYSIECLVRN 133 ++I+ ++ Sbjct: 137 YYDDFTIQDILEE 149 >gi|73663658|ref|YP_302439.1| hypothetical protein SSP2349 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496173|dbj|BAE19494.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 144 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L + H D S++AE C++ + L ++ + L ++ RG+ GG + Sbjct: 8 AVHLLTFLVKHPDERYSSSELAERICVNPVQLRRVTRKLNDQQYLDASRGKYGGYQANDQ 67 Query: 70 ADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCG-LTSVLRKALNAFF-DVLTQYS 126 ++ + ++ A E F DC + G S K A D + Sbjct: 68 TMKVNLAELFVAFSEERSDGRLFTGDEGSDCEISREIGHTMSNFHKREQALLIDYYKSVT 127 Query: 127 IECLVRN 133 I ++ Sbjct: 128 IHDVLNE 134 >gi|146302746|ref|YP_001197337.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157164|gb|ABQ08018.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium johnsoniae UW101] Length = 135 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 2/129 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + I +L + IA + ++ + + K + L IVE+ G+ G Sbjct: 2 LSGKFAITIHILTLLNKFPNDYLSSEFIAGSINLNPVLVRKEIANLKAHHIVESKEGKNG 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 G +L + ++T+ ++ + T E+ + DCP+ + L ++ Sbjct: 62 GTKLAVDSSKLTLKEIFEMTFETIGLGYAKNQPNPDCPVGKNINQHLANLYADMNEKVSA 121 Query: 121 VLTQYSIEC 129 L S+E Sbjct: 122 QLEGISLED 130 >gi|218532306|ref|YP_002423122.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family [Methylobacterium chloromethanicum CM4] gi|218524609|gb|ACK85194.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium chloromethanicum CM4] Length = 154 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A + P +A + + + +I+ L G V + +G GG ++ Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDF 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ D+ +A A S C + + + R+A L + ++ Sbjct: 70 GAVTLRDIYEALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALSAD 134 >gi|228909201|ref|ZP_04073028.1| Rrf2 [Bacillus thuringiensis IBL 200] gi|228850445|gb|EEM95272.1| Rrf2 [Bacillus thuringiensis IBL 200] Length = 116 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 17/117 (14%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R D++ + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132 + +C S+ C + S +RK L A F + L Y+++ +V Sbjct: 62 GALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|2226146|emb|CAA74438.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] Length = 57 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 ECF ++K C + CGL VL +AL A+ VL +Y++ LV+N+ I K+ Sbjct: 1 VECFDANKNLCVISPVCGLKHVLNEALLAYLAVLDKYTLRDLVKNKEDIMKLL 53 >gi|302384457|ref|YP_003820279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] gi|302195085|gb|ADL02656.1| transcriptional regulator, BadM/Rrf2 family [Clostridium saccharolyticum WM1] Length = 143 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 18/146 (12%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + ++Y ++A C + + K++ L KAGI+ T G G Sbjct: 1 MTSEFAVAVHGIVYL-NQRKVTISSEELASNVCTNPARVRKVMAKLKKAGIITTKEGLEG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G + + ++ + + A + +F V+ + S +D P C + S + ++ + L Sbjct: 60 GYHFAKDSSEVNLKSICDALDVTF-VSSSWKSGNVDTP----CMIASGMSGVMDEIYGDL 114 Query: 123 T--------QYSIEC----LVRNRSS 136 + +I+ L++NR Sbjct: 115 NELCRRRMEEITIKDIQDKLIKNRPG 140 >gi|312868812|ref|ZP_07729001.1| transcriptional regulator [Lactobacillus oris PB013-T2-3] gi|311095655|gb|EFQ53910.1| transcriptional regulator [Lactobacillus oris PB013-T2-3] Length = 143 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 10/145 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R + +L+Y I N S IA+ + + +++ +VKAGI++ G Sbjct: 1 MKYSHRLSDAVHILVYLEILGS--NSSSAIADNVNSNPSLIRRLVASMVKAGILQ-RSGH 57 Query: 61 RG--GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKAL 115 G ++L RPA Q+++LD+ +A E + PL C LT+ + Sbjct: 58 HGEITIKLTRPAAQVSLLDIYQAVESHQEFLDVDQEINHHHPL-SRCMPEVLTAEYERVQ 116 Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139 A + Q + +V R+ IK Sbjct: 117 QAAEQEMAQIKLATIVDKVRTKIKD 141 >gi|206576463|ref|YP_002239225.1| putative transcriptional regulator [Klebsiella pneumoniae 342] gi|206565521|gb|ACI07297.1| putative transcriptional regulator [Klebsiella pneumoniae 342] Length = 137 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +++ P ++ I++ +S +L +I + L +V + RG GG D IT+ +V Sbjct: 21 LYDGSPVSLTAISKESKLSTSYLEQIFKKLRAGNLVISQRGPGGGY--SPRGDDITVTEV 78 Query: 79 VKAT 82 + A Sbjct: 79 ITAV 82 >gi|262280230|ref|ZP_06058014.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258008|gb|EEY76742.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 80 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125 L A + +V+ + + EC + C L CGL +L +AL +F+ L QY Sbjct: 1 LNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQY 57 Query: 126 SIECLVRNRSS 136 ++ +++ S Sbjct: 58 TLGEVLQQSKS 68 >gi|46190615|ref|ZP_00206526.1| COG1959: Predicted transcriptional regulator [Bifidobacterium longum DJO10A] gi|189438960|ref|YP_001954041.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|189427395|gb|ACD97543.1| Putative transcriptional regulator [Bifidobacterium longum DJO10A] Length = 106 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 9/98 (9%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLV 102 + L +AG++ RG GG L R +IT+LD+ +A E + V K CP+ Sbjct: 1 MGALKRAGLITVARG-NGGAELARTPKEITLLDIYQAVESTNLDDVIGIHERGKHTCPVA 59 Query: 103 GSCGLTSVLRKAL----NAFFDVLTQYSIECLVRNRSS 136 + + VL+ A A D + + ++ ++ + + Sbjct: 60 RN--IHDVLKDAYAPVAKAMSDSMREVTLANMLADYRN 95 >gi|300174153|ref|YP_003773319.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888532|emb|CBL92500.1| Transcription regulator [Leuconostoc gasicomitatum LMG 18811] Length = 137 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 3/135 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ + I +L Y I + IA + + + ++ L A ++ T +G Sbjct: 1 MRVSYKLSDAIHILAYIEIFKQHDLSSKAIAASIGSNASVVRNLMLDLRAANLLTTHQGI 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118 L + + I+I V A + + +C + G L A Sbjct: 61 AA-PELAKSPNDISIYAVYCAINMTHKLLHIDPKTNPNCLVGGHIQDTLNQFYDGIETAA 119 Query: 119 FDVLTQYSIECLVRN 133 +D + S+ ++++ Sbjct: 120 YDHMKTISLAHVIQD 134 >gi|329891241|ref|ZP_08269584.1| transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] gi|328846542|gb|EGF96106.1| transcriptional regulator family protein [Brevundimonas diminuta ATCC 11568] Length = 158 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 3/126 (2%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A + +A + + + + ++ L KAG++ T G GG L R + I + + Sbjct: 22 AYAATEAEPSAVLAASVPTNPVVIRRVTALLAKAGLIATRPGASGGSWLLRRPEDIRLDE 81 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRS 135 V+KA + A K CP+ + L A A L++ +I L+ S Sbjct: 82 VLKAVNGCAQLGSPPAGAKG-CPVGEHIPRQVAKALTAADQAAGAALSKITIADLLAEDS 140 Query: 136 SIKKIF 141 + + F Sbjct: 141 EVLRPF 146 >gi|120611990|ref|YP_971668.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590454|gb|ABM33894.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli AAC00-1] Length = 147 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A H +A+ + + + + L +AGIV + +G GG R+ Sbjct: 11 LHALLHMAGHEGR-MTSDALAQCLGTHPVVVRRTMGYLREAGIVTSDKGHAGGWRIHADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ + +A E A + +C + + L +A ++ ++ Sbjct: 70 GTVTLRQLHEALGEPAMFAIGNRNESPECLVEQAVNAALAGTFAEAEALLLKRFSEITLA 129 Query: 129 CL 130 L Sbjct: 130 DL 131 >gi|325263527|ref|ZP_08130261.1| transcriptional regulator superfamily [Clostridium sp. D5] gi|324031236|gb|EGB92517.1| transcriptional regulator superfamily [Clostridium sp. D5] Length = 137 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 14/136 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T + L++ H +AE C + + KI+ L KAG+VET G G Sbjct: 1 MTSEFTIAVHALVFL-NHKGTVYSSEGLAENICTNAARIRKIMVKLKKAGLVETKEGIEG 59 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G + +++ + + A E SF +S C + S + + ++ L Sbjct: 60 GYLFVKNSEETDLCTIADALEFSF-----VSSGWKSGSSELKCLIASGMAGVMEDVYNDL 114 Query: 123 TQ--------YSIECL 130 Q ++ L Sbjct: 115 DQQCRRRLREITVADL 130 >gi|23464707|ref|NP_695310.1| hypothetical protein BL0081 [Bifidobacterium longum NCC2705] gi|23325272|gb|AAN23946.1| conserved hypothetical protein in upf0074 [Bifidobacterium longum NCC2705] Length = 122 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 9/113 (7%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES--FF 87 ++E+ + + + L L +AG++ RG GG L +IT+LD+ +A E + Sbjct: 2 LSESTGTNAVSIRNALGALKRAGLITVARG-TGGAELAHTPKEITLLDIHQAVESTNLDD 60 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKAL----NAFFDVLTQYSIECLVRNRSS 136 V CP+ + + VL+ A A D + + ++ ++ + + Sbjct: 61 VIGIHERGNHTCPVARN--IHDVLKDAYAPVAKAMSDSMREVTLANMLADYRN 111 >gi|254421048|ref|ZP_05034772.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] gi|196187225|gb|EDX82201.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3] Length = 156 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 7/141 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M ++R L Y A + +A + + + + ++ L KAG++ T Sbjct: 1 MSDSQRFPVAAHALAYMAHKGAFSPAQAAPSALLAASVPTNPVVVRRVTALLAKAGLIAT 60 Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114 G GG L R + I + +V+KA + A K CP+ + L A Sbjct: 61 RPGATGGSWLLRQPEDIRLDEVLKAVNGCAHIGSPPAGAKG-CPISEHIPRQVGKALTAA 119 Query: 115 LNAFFDVLTQYSIECLVRNRS 135 A + L++ +I L+ Sbjct: 120 DEAATEALSKITIADLLDENP 140 >gi|254563375|ref|YP_003070470.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium extorquens DM4] gi|254270653|emb|CAX26657.1| putative transcriptional regulator, BadM/Rrf2 family [Methylobacterium extorquens DM4] Length = 154 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ A + P +A + + + +I+ L G V + +G GG ++ Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDF 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 +T+ D+ A A S C + + + R+A L + ++ Sbjct: 70 GAVTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 ALSAD 134 >gi|262368151|pdb|3K69|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator (Lp_0360) From Lactobacillus Plantarum At 1.95 A Resolution Length = 162 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++Y H D ++A++ ++ + + IL L K G + G+ GG +L Sbjct: 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVXIRNILSVLHKHGYLTGTVGKNGGYQLDLA 73 Query: 70 ADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTSVLRKALNAFFD 120 + D+ T F P+ + LT + A + Sbjct: 74 LADXNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTDLFTVADRQYRA 133 Query: 121 VLTQYSIECL 130 Q++ L Sbjct: 134 YYHQFTXADL 143 >gi|260584236|ref|ZP_05851984.1| transcriptional regulator [Granulicatella elegans ATCC 700633] gi|260158862|gb|EEW93930.1| transcriptional regulator [Granulicatella elegans ATCC 700633] Length = 141 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I L Y ++H+D Q+A C + + + K++ G V+ V G GG ++ Sbjct: 9 IHCLTYLSVHHDRRFSSQQLAHNACSNPVIVRKVMSLASSKGYVDVVNGVNGGYKIQVDP 68 Query: 71 DQITILDVVKATEESFFVAECFASH-KIDCPLVGS-CGLTSVLRK--ALNAFFDVLTQYS 126 I++ D+ E + + + S C + + C + S L++ N + S Sbjct: 69 KDISLGDLFILVGEDKRLKKQYQSSLDEVCLVANNICSVFSDLQEEQIQNQV-KFYQKQS 127 Query: 127 IECLVRN 133 I +V+ Sbjct: 128 ILDIVKR 134 >gi|229156990|ref|ZP_04285071.1| Rrf2 [Bacillus cereus ATCC 4342] gi|228626480|gb|EEK83226.1| Rrf2 [Bacillus cereus ATCC 4342] Length = 116 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 17/117 (14%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R ++ + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEVNLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132 + +C S+ C + S +RK L A F + L Y+++ +V Sbjct: 62 GALQP-KCPESNN-------QCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|16519776|ref|NP_443896.1| conserved hypothetical 25.8 kDa protein [Sinorhizobium fredii NGR234] gi|2496645|sp|P55486|Y4IC_RHISN RecName: Full=Uncharacterized protein y4iC gi|2182440|gb|AAB91698.1| conserved hypothetical 25.8 kDa protein [Sinorhizobium fredii NGR234] Length = 230 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGR--RGGVRLCRPADQITILDVVKATEE 84 +++IA I + FL IL L V VR R G+RL +PA +I I V++A + Sbjct: 62 VTEIAMRNKIPKKFLDTILLELRN---VLCVRRRVHMAGIRLSKPASEIMIGQVIRALDG 118 Query: 85 SFFVAECFASHKIDC 99 C + C Sbjct: 119 PLAPIHCASRSAFAC 133 >gi|257437595|ref|ZP_05613350.1| Rrf2 family protein [Faecalibacterium prausnitzii A2-165] gi|257199902|gb|EEU98186.1| Rrf2 family protein [Faecalibacterium prausnitzii A2-165] Length = 150 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 6/142 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 MH++ + + L++ + + + ++ + + + + IL L K I+ G Sbjct: 1 MHISNKCSIAVHCLVFLSEYGEREKVTSELLSCSTGCNPVTIRNILSALKKGEIITVKPG 60 Query: 60 RRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 GG L P ++I + + + + S CP+ + G L Sbjct: 61 -TGGAELALPPEKIDLYRICSVVDPEAIDKMIGIHHSPSPFCPVGRNIGNVLGKTYDTLK 119 Query: 116 NAFFDVLTQYSIECLVRNRSSI 137 N + ++E ++ + + Sbjct: 120 NNLIASMKTITLEQILADYHEV 141 >gi|150398750|ref|YP_001329217.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030265|gb|ABR62382.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae WSM419] Length = 152 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 24/135 (17%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A ++A + + + + + L +AG+V + +G GG L Sbjct: 11 LHALLHMAERK--TITSEELAACLSTNPVVVRRTMAGLREAGLVRSEKGHGGGWSLACDL 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD---------- 120 +++ DV A E F A + C ++ +A+NA D Sbjct: 69 ATVSLADVHAALGEPAFFAIGNRTESPGC----------LVEQAVNAAMDGALREAELLL 118 Query: 121 --VLTQYSIECLVRN 133 L S+ L R+ Sbjct: 119 LQRLGTISLADLSRD 133 >gi|228916014|ref|ZP_04079587.1| Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928446|ref|ZP_04091486.1| Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934686|ref|ZP_04097519.1| Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947024|ref|ZP_04109320.1| Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986485|ref|ZP_04146621.1| Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092366|ref|ZP_04223538.1| Rrf2 [Bacillus cereus Rock3-42] gi|229122928|ref|ZP_04252136.1| Rrf2 [Bacillus cereus 95/8201] gi|229197522|ref|ZP_04324248.1| Rrf2 [Bacillus cereus m1293] gi|228585967|gb|EEK44059.1| Rrf2 [Bacillus cereus m1293] gi|228660512|gb|EEL16144.1| Rrf2 [Bacillus cereus 95/8201] gi|228691068|gb|EEL44835.1| Rrf2 [Bacillus cereus Rock3-42] gi|228773306|gb|EEM21736.1| Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812598|gb|EEM58923.1| Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824938|gb|EEM70737.1| Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831177|gb|EEM76774.1| Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843609|gb|EEM88685.1| Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 116 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 5/111 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R D++ + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132 + +C S+ C + + L ++ A + L Y+++ +V Sbjct: 62 GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|323219527|gb|EGA04012.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 63 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 V+ E + C + C + +C L L KA+ +F L Y++ LV + Sbjct: 2 VRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLY 57 Query: 139 KIF 141 K+ Sbjct: 58 KLL 60 >gi|325125820|gb|ADY85150.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 149 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 10/141 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + K + I VL+ A+ D P + ++ +S+ +L KIL L K G++ Sbjct: 1 MKINKSVEQAIYVLLILALQKDGEPLKSRVLSTHLKVSDSYLKKILMKLKKGGLIAASAS 60 Query: 60 RRGGVRLCRPADQITILDVVKAT---EESFFVAE----CFASHKIDCPLVGSCGLTSVLR 112 + GG +L P I+I DV A ++ ++ F ++ Sbjct: 61 KNGGYQLAWPIGAISIKDVFTALQLTDDQLELSHLAQYIFPDPNHVAQSEQE--ISQAFH 118 Query: 113 KALNAFFDVLTQYSIECLVRN 133 +A AF+D L Q+ ++ L+++ Sbjct: 119 QAFAAFYDQLGQFKLDRLLKD 139 >gi|229012594|ref|ZP_04169768.1| Rrf2 [Bacillus mycoides DSM 2048] gi|229168130|ref|ZP_04295858.1| Rrf2 [Bacillus cereus AH621] gi|229174084|ref|ZP_04301620.1| Rrf2 [Bacillus cereus MM3] gi|228609416|gb|EEK66702.1| Rrf2 [Bacillus cereus MM3] gi|228615374|gb|EEK72471.1| Rrf2 [Bacillus cereus AH621] gi|228748754|gb|EEL98605.1| Rrf2 [Bacillus mycoides DSM 2048] Length = 116 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 19/118 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R +I + ++ + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEINLWNMYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132 + CP C + S +RK L A F + L Y+++ +V Sbjct: 62 GALQP---------KCPESNDQCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|227546815|ref|ZP_03976864.1| Rrf2 family transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212777|gb|EEI80658.1| Rrf2 family transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 106 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 9/98 (9%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLV 102 + L +AG++ RG GG L R +IT+LD+ +A E + V CP+ Sbjct: 1 MGALKRAGLITVARG-TGGAELARTPKEITLLDIYQAVESTNLDDVIGIHERGNHTCPVA 59 Query: 103 GSCGLTSVLRKAL----NAFFDVLTQYSIECLVRNRSS 136 + + VL+ A A D + + ++ ++ + + Sbjct: 60 RN--IHDVLKDAYAPVAKAMSDSMREVTLANMLADYRN 95 >gi|229185625|ref|ZP_04312804.1| Rrf2 [Bacillus cereus BGSC 6E1] gi|228597855|gb|EEK55496.1| Rrf2 [Bacillus cereus BGSC 6E1] Length = 116 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R ++ + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEVNLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132 + +C S+ C + + L ++ A + L Y+++ +V Sbjct: 62 GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|262066034|ref|ZP_06025646.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693] gi|291380285|gb|EFE87803.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693] Length = 140 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + + +L Y D +A++ + + KIL L I+E+ +G++G + Sbjct: 3 TKFSIALHILAYI-EETDNTVTSELLAKSVGTNASHIRKILTLLKDVNIIESQQGKKG-I 60 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122 L A+++++ + + + DCP+ + L + ++ L Sbjct: 61 ALKIKANELSLDKIYLGVYPEKELLHIHDTANQDCPVGATIKEALLPIFEESERQLILNL 120 Query: 123 TQYSIECLVRN 133 +++ L+ + Sbjct: 121 KSKTLKSLIED 131 >gi|228901883|ref|ZP_04066051.1| Rrf2 [Bacillus thuringiensis IBL 4222] gi|228857735|gb|EEN02227.1| Rrf2 [Bacillus thuringiensis IBL 4222] Length = 116 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 19/118 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R ++ + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLGEVNLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132 + CP C + S +RK L A F + L Y+++ +V Sbjct: 62 GALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|170769186|ref|ZP_02903639.1| tranScriptional repressor of the iscrsua operon [Escherichia albertii TW07627] gi|194436072|ref|ZP_03068174.1| transcriptional regulator [Escherichia coli 101-1] gi|170121838|gb|EDS90769.1| tranScriptional repressor of the iscrsua operon [Escherichia albertii TW07627] gi|194424800|gb|EDX40785.1| transcriptional regulator [Escherichia coli 101-1] Length = 119 Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 29/131 (22%) Query: 4 TKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++R + V++ + + P + Q+++ +S +L +I + L ++ +V+ RG G Sbjct: 8 SQRASVAVMVMIKFVKQYTGKPISLRQLSKET-VSLSYLEQIFRYLRESSLVKATRGPGG 66 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 G + + ++ D+V+A +C + + L Sbjct: 67 GYIPTK--ENYSVGDIVRAM-------KCSGLYT------------------QHVILAAL 99 Query: 123 TQYSIECLVRN 133 S+ L + Sbjct: 100 DNISLTSLQED 110 >gi|229121703|ref|ZP_04250926.1| hypothetical protein bcere0016_20040 [Bacillus cereus 95/8201] gi|228661747|gb|EEL17364.1| hypothetical protein bcere0016_20040 [Bacillus cereus 95/8201] Length = 116 Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85 Q+++ C++ + + K+++ L K G++ T G GG ++T+ + + T + Sbjct: 3 TSEQLSDNLCVNAVRIRKVMRMLKKKGLISTKEGFTGGYIFKHNPKEVTLGQIYELTSNN 62 Query: 86 FFVAECFASH-KIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133 + + H + DC + G +T + + + L +++ +V Sbjct: 63 SLASNWRSGHIEKDCVISSGIGQVMTDIFSEGDQCYKLFLDGINVQDVVEK 113 >gi|229097857|ref|ZP_04228809.1| Rrf2 [Bacillus cereus Rock3-29] gi|229103939|ref|ZP_04234617.1| Rrf2 [Bacillus cereus Rock3-28] gi|229116864|ref|ZP_04246248.1| Rrf2 [Bacillus cereus Rock1-3] gi|228666696|gb|EEL22154.1| Rrf2 [Bacillus cereus Rock1-3] gi|228679507|gb|EEL33706.1| Rrf2 [Bacillus cereus Rock3-28] gi|228685533|gb|EEL39459.1| Rrf2 [Bacillus cereus Rock3-29] Length = 116 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ + + + K+L L K +++ G GG R ++ + + + T E Sbjct: 2 STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGGGFIFARDLSEVNLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132 + +C S+ C + + L ++ A + L Y+++ +V Sbjct: 62 GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|254462391|ref|ZP_05075807.1| Rrf2 family protein [Rhodobacterales bacterium HTCC2083] gi|206678980|gb|EDZ43467.1| Rrf2 family protein [Rhodobacteraceae bacterium HTCC2083] Length = 69 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 ++ E + EC C L SCGLTS LR A +AF+ L+ ++ L +N + + Sbjct: 1 MRDLESQTELVECLRPDGGSCVLAPSCGLTSALRVAQDAFYTSLSTMTLADLTKNNAPMA 60 Query: 139 KIF 141 ++ Sbjct: 61 RLL 63 >gi|227903951|ref|ZP_04021756.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC 4796] gi|227868342|gb|EEJ75763.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC 4796] Length = 119 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 34 CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAE 90 +S+ +L KIL L ++ ++ G +L RP D+I++ DV+ A E Sbjct: 1 MGVSDSYLKKILMMLKHNELITASASKKVGYQLARPIDEISLKDVLYALELNHNQIEFNH 60 Query: 91 CFAS--HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + D + + L+ L++F+D L + + L+++ Sbjct: 61 LANNIFDDQDHVEESENKIINTLQAGLSSFYDELDELKLSDLLKD 105 >gi|218663324|ref|ZP_03519254.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli IE4771] Length = 183 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L + ++ + A + +AE + + +L K LQ L +A +V+T G Sbjct: 4 LKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPS 63 Query: 62 GGVRLCRP 69 GG RL RP Sbjct: 64 GGYRLARP 71 >gi|299782698|gb|ADJ40696.1| Transcriptional regulator [Lactobacillus fermentum CECT 5716] Length = 97 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 + L KAG++ T G L + ++IT+LDV +A E+ + + DCP+ + Sbjct: 1 MSRLTKAGLLVTHPG-TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKN 59 Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRN 133 LT K A + + ++ + N Sbjct: 60 IQGVLTQEFAKVQAAAEAAMQEITLAEITAN 90 >gi|229140014|ref|ZP_04268577.1| Rrf2 [Bacillus cereus BDRD-ST26] gi|228643420|gb|EEK99688.1| Rrf2 [Bacillus cereus BDRD-ST26] Length = 116 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 5/111 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + + I+E+ C+ + + K+L L K +++ G GG R D++ + + + T E Sbjct: 2 STSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132 + +C S+ C + + L ++ A + L Y+++ +V Sbjct: 62 GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|325143452|gb|EGC65778.1| transcriptional regulator family protein [Neisseria meningitidis M01-240013] Length = 52 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKA 51 M LT + + + ++ A++ ++S I+E IS +L ++ L +A Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRA 52 >gi|307243949|ref|ZP_07526073.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678] gi|306492666|gb|EFM64695.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678] Length = 141 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 14/139 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ +H +++ C + + + K++ K GIV T G GG + Sbjct: 7 ALHALVFL-MHAGESKSSEELSTNLCTNPVRIRKVMAKCKKYGIVTTKAGVNGGYMVADK 65 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121 + I + + A S L C + S + + ++ F + Sbjct: 66 GESINLKHIYDAV-----SVPIIESKWHSGDLDSDCAICSGMAQYVDELFFKMNEECVKM 120 Query: 122 LTQYSIECLVRNRSSIKKI 140 L + + IK++ Sbjct: 121 LETIKLCDVEERLGQIKEL 139 >gi|148543420|ref|YP_001270790.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|227363569|ref|ZP_03847686.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325681763|ref|ZP_08161282.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148530454|gb|ABQ82453.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri DSM 20016] gi|227071365|gb|EEI09671.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978854|gb|EGC15802.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 106 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 + L KAG++ TV G L + + I++ D+ A E + C + G+ Sbjct: 1 MSALNKAGLINTVHGAA-DPALAKSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGN 59 Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 L ++A A L + S++ ++ + I +A Sbjct: 60 IQETLDGFYQQAETAAKAKLAKTSLQDVIDTIRVKQAIKDA 100 >gi|291532973|emb|CBL06086.1| hypothetical protein MHY_11290 [Megamonas hypermegale ART12/1] Length = 62 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%) Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 +++ E S C +C C + K +A +V+ ++ L+ + ++ Sbjct: 2 ILRLIEGSLAPVACLDDDINNCTRADRCPTLILWEKLYDAISEVVDNITLADLISWQKNM 61 Query: 138 K 138 K Sbjct: 62 K 62 >gi|184152829|ref|YP_001841170.1| hypothetical protein LAR_0174 [Lactobacillus reuteri JCM 1112] gi|183224173|dbj|BAG24690.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] Length = 107 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 + L KAG++ TV G L + + I++ D+ A E + C + G+ Sbjct: 2 MSALNKAGLINTVHGAA-DPALAKSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGN 60 Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 L ++A A L + S++ ++ + I +A Sbjct: 61 IQETLDGFYQQAETAAKAKLAKTSLQDVIDTIRVKQAIKDA 101 >gi|310815154|ref|YP_003963118.1| Putative HTH-type transcriptional regulator ywnA [Ketogulonicigenium vulgare Y25] gi|308753889|gb|ADO41818.1| Putative HTH-type transcriptional regulator ywnA [Ketogulonicigenium vulgare Y25] Length = 147 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A H D P I + + + + + + L +AG+V RG GG R+ Sbjct: 11 LHALLHMAEH-DGPMTSDAIGQCLGTNPVVVRRTMGLLREAGLVSAERGHAGGWRISADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 +++T+ D+ A E A C + S + + L +A +L Sbjct: 70 NRVTLRDLHDALGEPAVFAIGNRHENPACLVEQS--VNAALDRAFTEAEALL 119 >gi|186473779|ref|YP_001861121.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum STM815] gi|184196111|gb|ACC74075.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum STM815] Length = 136 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95 + + + +++ L +G+V + GR GG + A+ IT DV +A E A ++ Sbjct: 31 TNAVVVRRVMGRLRDSGLVTSTGGREGGWSVACAAEMITARDVFEALESENVFAIGASAD 90 Query: 96 KIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132 CP+ + L+ L A + ++E L R Sbjct: 91 HPHCPVEKAVNAKLSIALDNAQQKLLENPGGTTLEELAR 129 >gi|240140866|ref|YP_002965346.1| putative transcriptional regulator, BadM/Rrf2 family [Methylobacterium extorquens AM1] gi|240010843|gb|ACS42069.1| putative transcriptional regulator, BadM/Rrf2 family [Methylobacterium extorquens AM1] Length = 142 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 3/123 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L++ A + P +A + + + +I+ L G V + +G GG ++ Sbjct: 1 MLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDFGA 59 Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECL 130 +T+ D+ A A S C + + + R+A L + ++ L Sbjct: 60 VTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLAAL 119 Query: 131 VRN 133 + Sbjct: 120 SAD 122 >gi|223042722|ref|ZP_03612770.1| transcriptional regulator superfamily [Staphylococcus capitis SK14] gi|222443576|gb|EEE49673.1| transcriptional regulator superfamily [Staphylococcus capitis SK14] Length = 143 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H + ++AE C++ + L +++ L ++ TVRG+ GG + + Sbjct: 8 AVHVLSFLTKHKNEKFNSKELAELTCLNPVQLRRVVANLSDQQLITTVRGKDGGYKANQY 67 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-----LTQ 124 + + ++ + F +A C ++ + + + + D L Sbjct: 68 TSTVNLAELYQ----QFVLARDNNQRVYTGDRNSHCDISKHIAQIMARYRDEEIQLILNF 123 Query: 125 Y---SIECLVRN 133 Y +I+ ++ + Sbjct: 124 YRNKTIQDVLND 135 >gi|229162267|ref|ZP_04290234.1| Rrf2 [Bacillus cereus R309803] gi|228621194|gb|EEK78053.1| Rrf2 [Bacillus cereus R309803] Length = 116 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 5/111 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83 + S I+E+ + + + K+L L K +++ G GG ++ + ++ + T E Sbjct: 2 STSSAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFACDLSEVNLWNIYQITSE 61 Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132 + +C C + + L ++ A + L Y+++ +V Sbjct: 62 GALQP-KC-PEANGQCIVGSNMRTVLFTIFLGAEEHLGEYLKNYTMKEVVD 110 >gi|289423480|ref|ZP_06425282.1| putative transcriptional regulator [Peptostreptococcus anaerobius 653-L] gi|289156114|gb|EFD04777.1| putative transcriptional regulator [Peptostreptococcus anaerobius 653-L] Length = 145 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I L A H+ +A C + + + K++ +A +VET G GG ++ Sbjct: 7 AIHALCLLA-HDFKSWSSEALANNLCTNPVRIRKVMAKCKRANLVETKAGVNGGYQIVEN 65 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT------ 123 I + + A + S + C S + + ++ F L Sbjct: 66 GKNINLKQIYDAIGQPI-----VESKWHSGDIDSECIYASGMSEYVDNLFAYLNEEVVFL 120 Query: 124 --QYSIECL 130 + S+ + Sbjct: 121 LEKISLGDI 129 >gi|257790392|ref|YP_003180998.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] gi|257474289|gb|ACV54609.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM 2243] Length = 154 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H +A+ C + + K++ PL +AG V T G GG R Sbjct: 8 AVHALVYL-NHKADIVSSEALAKNICTNAARVRKVMAPLKRAGFVTTREGNVGGYRFAGD 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121 A + + V A S + C + S + ++ F + Sbjct: 67 ASAVDLHMVADALN-----IRFVQSGWHSGDMDMKCLVASGMAGVMDDIFLDLDERCRER 121 Query: 122 LTQYSIECL 130 L Q SI + Sbjct: 122 LAQISIADI 130 >gi|317488806|ref|ZP_07947339.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|325833719|ref|ZP_08166134.1| transcriptional regulator [Eggerthella sp. HGA1] gi|316912111|gb|EFV33687.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA] gi|325485259|gb|EGC87729.1| transcriptional regulator [Eggerthella sp. HGA1] Length = 154 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 14/129 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H +A+ C + + K++ PL +AG V T G GG R Sbjct: 8 AVHALVYL-NHKADIVSSEALAKNICTNAARVRKVMAPLKRAGFVTTREGNVGGYRFAGD 66 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121 A + + V A S + C + S + ++ F + Sbjct: 67 ASAVDLHMVADALN-----IRFVQSGWHSGDMDMKCLVASGMAGIMDDIFLDLDERCRER 121 Query: 122 LTQYSIECL 130 L Q SI + Sbjct: 122 LAQISIADI 130 >gi|316935256|ref|YP_004110238.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602970|gb|ADU45505.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas palustris DX-1] Length = 146 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ A + P +A C + + + + + L AG+V + RG GG ++ Sbjct: 11 LHALLHMAERGE-PMTSETLAACMCTNPVVVRRTMGLLRDAGLVASARGPSGGWQIVADL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128 + +T+ D+ A E A C + + L A D L + ++ Sbjct: 70 NAVTLRDLYDALGEPTVFAIGNRHEAPQCLVEQAVNAALDDAFADAEALLLDRLGKITLA 129 Query: 129 CLVRN 133 L + Sbjct: 130 RLSAD 134 >gi|242372820|ref|ZP_04818394.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349472|gb|EES41073.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 143 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 I VL + H D ++AE C++ + L +++ L + TVRG+ GG + + Sbjct: 8 AIHVLTFLTKHKDEKFNSKELAELTCLNPVQLRRVVSVLSDQHYITTVRGKGGGYQSNQH 67 Query: 70 ADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLT 123 + + + + E + C + ++ + + + Sbjct: 68 TASVNLATLYQQFVLNKESKHRIYT--GDTSSHCDISKHIAHTMSDYYDEEIQLILNFYR 125 Query: 124 QYSIECLVRN 133 +I+ ++ + Sbjct: 126 NKTIQDVLND 135 >gi|227824338|ref|ZP_03989170.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904837|gb|EEH90755.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 166 Score = 61.5 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+Y H ++A C + + + KI+ L K G+VET G GG Sbjct: 8 AVHALVYL-THLGTLVSSDELARNICTNPVRVRKIMGKLKKLGLVETKEGHVGGYAAVSG 66 Query: 70 ADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF----FDVLTQ 124 ++ T+L + SF + + +DC + G++ V + + L Sbjct: 67 TEKATLLTIADGLGISFVDTKWRSGTEDMDCFISS--GMSLVFDRLYEEMDRACREELKH 124 Query: 125 YSIECLVRN 133 ++E + + Sbjct: 125 ITLESIAQE 133 >gi|317404221|gb|EFV84659.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 147 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL++ + I + + +F + + L AG V + G GG L Sbjct: 11 LHVLVHMHLRGGA-TTSQTIGQMLHTNPVFARRTMSVLRDAGFVTSTGGPGGGWTLACEL 69 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 D++T+ DV A + A A CP+ + Sbjct: 70 DRLTVGDVCDAIAHATLFAVGPAQDNAACPVEAA 103 >gi|167648721|ref|YP_001686384.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31] gi|167351151|gb|ABZ73886.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31] Length = 145 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 CA D +++A + + + + ++ L KAG++ G GG L +P + IT+ Sbjct: 21 CAFSADRAVASAELAASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPPEAITLD 80 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLVR 132 V++A + CP+ + + A A D L+Q S+ L+ Sbjct: 81 LVLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRGAMIAADTAVADRLSQISVADLLN 137 >gi|164688267|ref|ZP_02212295.1| hypothetical protein CLOBAR_01912 [Clostridium bartlettii DSM 16795] gi|164602680|gb|EDQ96145.1| hypothetical protein CLOBAR_01912 [Clostridium bartlettii DSM 16795] Length = 139 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 13/141 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +++R ++ +++ A+++D I++ + + + IL L K + Sbjct: 1 MKVSRRFQLTVQTVLFIAVYSDKKEMTCENISKEMKCNPVVIKNILNILYKNNFLT---- 56 Query: 60 RRGG----VRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG--LTSVLR 112 +G +RL R IT+ D+ K T+E C +I P+V L+ Sbjct: 57 -KGSSISNIRLKRNIKDITLWDIYKITDEVDINNIFCSDDLQIASPIVSDLPELLSPAFG 115 Query: 113 KALNAFFDVLTQYSIECLVRN 133 + +N+ D+L+ S++ L++ Sbjct: 116 EIMNSIKDILSTVSVDSLLKK 136 >gi|325846523|ref|ZP_08169438.1| HTH-type transcriptional regulator CymR domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481281|gb|EGC84322.1| HTH-type transcriptional regulator CymR domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 53 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVK 50 M L+ R YG+R + Y A + D +S I+ + E +L ++++ L K Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKK 51 >gi|49482825|ref|YP_040049.1| hypothetical protein SAR0601 [Staphylococcus aureus subsp. aureus MRSA252] gi|257424713|ref|ZP_05601140.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427382|ref|ZP_05603781.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430014|ref|ZP_05606398.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432716|ref|ZP_05609076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435620|ref|ZP_05611668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282903186|ref|ZP_06311077.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282904973|ref|ZP_06312831.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282907930|ref|ZP_06315764.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910238|ref|ZP_06318042.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913431|ref|ZP_06321220.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282918384|ref|ZP_06326121.1| hypothetical protein SASG_01939 [Staphylococcus aureus subsp. aureus C427] gi|282923349|ref|ZP_06331029.1| hypothetical protein SARG_00669 [Staphylococcus aureus subsp. aureus C101] gi|283957396|ref|ZP_06374849.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293500478|ref|ZP_06666329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509423|ref|ZP_06668134.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293524010|ref|ZP_06670697.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|295427137|ref|ZP_06819773.1| hypothetical protein SIAG_02503 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590514|ref|ZP_06949153.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] gi|49240954|emb|CAG39621.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272283|gb|EEV04406.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275575|gb|EEV07048.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279211|gb|EEV09812.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282131|gb|EEV12266.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284811|gb|EEV14930.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282314217|gb|EFB44607.1| hypothetical protein SARG_00669 [Staphylococcus aureus subsp. aureus C101] gi|282317518|gb|EFB47890.1| hypothetical protein SASG_01939 [Staphylococcus aureus subsp. aureus C427] gi|282322463|gb|EFB52785.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282325630|gb|EFB55938.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328175|gb|EFB58454.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331798|gb|EFB61309.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282596141|gb|EFC01102.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283790847|gb|EFC29662.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290920973|gb|EFD98034.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291095483|gb|EFE25744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467520|gb|EFF10035.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|295128925|gb|EFG58555.1| hypothetical protein SIAG_02503 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576813|gb|EFH95528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] gi|312438984|gb|ADQ78055.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH60] gi|315193964|gb|EFU24358.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 146 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV ++ T+RG+ GG Sbjct: 8 AVHVLTFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGKDGGYLANDR 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + + Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNNIINFYKEK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|228924846|ref|ZP_04088001.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834764|gb|EEM80248.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 144 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 10/137 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRG 59 M ++ ++L + P I I + IL L GI+ +G Sbjct: 1 MKISISLTVASQILSILKKNPLTPYDSEFIGRTLSIHPKIIRGILLCLRDTGIIHNNHKG 60 Query: 60 RRGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114 + G L + +IT+LDV ++ E + K +CP+ + L +L +A Sbjct: 61 K--GWYLIKDVHRITLLDVYRSVCRVEGEICSI--HENLKFNCPIGANIQFVLEVILIQA 116 Query: 115 LNAFFDVLTQYSIECLV 131 + +L ++ L+ Sbjct: 117 QDEMEQILENVTMGQLI 133 >gi|218680925|ref|ZP_03528822.1| hypothetical protein RetlC8_19586 [Rhizobium etli CIAT 894] Length = 158 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 2/132 (1%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + R + L AI+ P R +A + + + +L L AG G GG Sbjct: 16 STRFVVAVHTLAILAINEGRPVRSEDLAFSANTNPTVIRSLLSGLADAGFTTAQLGAGGG 75 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121 L + I +LDV +A E+S + + C + + L L KA A Sbjct: 76 ALLAKKPSHIALLDVYRAVEDSELFSMHRSPPNSVCVVGRNIQNVLRPTLDKAQAALEAE 135 Query: 122 LTQYSIECLVRN 133 L ++ + Sbjct: 136 LACVTVADIAAE 147 >gi|282915920|ref|ZP_06323685.1| hypothetical protein SATG_02017 [Staphylococcus aureus subsp. aureus D139] gi|282320216|gb|EFB50561.1| hypothetical protein SATG_02017 [Staphylococcus aureus subsp. aureus D139] Length = 146 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+L + + + VL + H+ S +AE C++ + L ++ LV ++ T+RG+ Sbjct: 1 MNL--KFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGK 58 Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116 GG + +++ + K E+ C + + T + N Sbjct: 59 DGGYLANDRSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118 Query: 117 AFFDVLTQYSIECLVRN 133 + + +I+ ++ + Sbjct: 119 IIINFYKEKTIKDVIED 135 >gi|15923585|ref|NP_371119.1| hypothetical protein SAV0595 [Staphylococcus aureus subsp. aureus Mu50] gi|15926273|ref|NP_373806.1| hypothetical protein SA0552 [Staphylococcus aureus subsp. aureus N315] gi|148267055|ref|YP_001245998.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393103|ref|YP_001315778.1| hypothetical protein SaurJH1_0633 [Staphylococcus aureus subsp. aureus JH1] gi|156978924|ref|YP_001441183.1| hypothetical protein SAHV_0593 [Staphylococcus aureus subsp. aureus Mu3] gi|253316612|ref|ZP_04839825.1| hypothetical protein SauraC_10785 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731206|ref|ZP_04865371.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005388|ref|ZP_05143989.2| hypothetical protein SauraM_02935 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258420350|ref|ZP_05683295.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258436521|ref|ZP_05689179.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258442345|ref|ZP_05691108.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446283|ref|ZP_05694441.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258450058|ref|ZP_05698155.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455097|ref|ZP_05703059.1| transcriptional regulator [Staphylococcus aureus A5937] gi|269202216|ref|YP_003281485.1| hypothetical protein SAAV_0558 [Staphylococcus aureus subsp. aureus ED98] gi|282895034|ref|ZP_06303256.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117] gi|295406974|ref|ZP_06816777.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819] gi|297246135|ref|ZP_06929990.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796] gi|13700487|dbj|BAB41784.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246363|dbj|BAB56757.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740124|gb|ABQ48422.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus JH9] gi|149945555|gb|ABR51491.1| protein of unknown function UPF0074 [Staphylococcus aureus subsp. aureus JH1] gi|156721059|dbj|BAF77476.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724947|gb|EES93676.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257843664|gb|EEV68068.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257848792|gb|EEV72778.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257852074|gb|EEV76006.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854877|gb|EEV77822.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257856677|gb|EEV79581.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257862737|gb|EEV85503.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262074506|gb|ACY10479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED98] gi|282762617|gb|EFC02755.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117] gi|285816296|gb|ADC36783.1| hypothetical protein SA2981_0572 [Staphylococcus aureus 04-02981] gi|294968205|gb|EFG44231.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819] gi|297176981|gb|EFH36237.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796] gi|312829090|emb|CBX33932.1| transcriptional regulator family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128897|gb|EFT84895.1| hypothetical protein CGSSa03_00785 [Staphylococcus aureus subsp. aureus CGS03] gi|329724366|gb|EGG60877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 21172] Length = 146 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + + Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNEK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|323463348|gb|ADX75501.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 140 Score = 60.3 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 7/134 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H +AE C++ + L +++ L + G V+ VRG++GG Sbjct: 8 AVHVLTFLNQHKGEVFNSQALAENVCVNPVQLRRVMSKLQQKGDVKVVRGQKGGYLATED 67 Query: 70 ADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124 I + + + F + + C + + V+ + Sbjct: 68 GLAIKLEPLFRLFNRPENHGRLFTGNPSMHCKISQ--KIEQVMYGHYLIEQEIIANYYQG 125 Query: 125 YSIECLVRNRSSIK 138 +I ++ ++ Sbjct: 126 QTIGDILNQIREVE 139 >gi|319893600|ref|YP_004150475.1| hypothetical protein SPSINT_2311 [Staphylococcus pseudintermedius HKU10-03] gi|317163296|gb|ADV06839.1| hypothetical protein SPSINT_2311 [Staphylococcus pseudintermedius HKU10-03] Length = 141 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 7/134 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H +AE C++ + L +++ L + G V+ VRG++GG Sbjct: 9 AVHVLTFLNQHKGEVFNSQALAENVCVNPVQLRRVMSKLQQKGDVKVVRGQKGGYLATED 68 Query: 70 ADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124 I + + + F + + C + + V+ + Sbjct: 69 GLAIKLEPLFRLFNRPENHGRLFTGNPSMHCKISQ--KIEQVMYGHYLIEQEIIANYYQG 126 Query: 125 YSIECLVRNRSSIK 138 +I ++ ++ Sbjct: 127 QTIGDILNQIREVE 140 >gi|57650052|ref|YP_185526.1| hypothetical protein SACOL0641 [Staphylococcus aureus subsp. aureus COL] gi|151220770|ref|YP_001331592.1| hypothetical protein NWMN_0558 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508834|ref|YP_001574493.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141885|ref|ZP_03566378.1| hypothetical protein SauraJ_09680 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732966|ref|ZP_04867131.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|258450951|ref|ZP_05699003.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|284023610|ref|ZP_06378008.1| hypothetical protein Saura13_03432 [Staphylococcus aureus subsp. aureus 132] gi|304381805|ref|ZP_07364452.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284238|gb|AAW36332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|150373570|dbj|BAF66830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367643|gb|ABX28614.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729146|gb|EES97875.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|257861371|gb|EEV84180.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|269940167|emb|CBI48543.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|302750485|gb|ADL64662.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339591|gb|EFM05538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196522|gb|EFU26871.1| hypothetical protein CGSSa01_02231 [Staphylococcus aureus subsp. aureus CGS01] gi|320139838|gb|EFW31700.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MRSA131] gi|329313316|gb|AEB87729.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus T0131] gi|329729739|gb|EGG66140.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 21193] gi|329729854|gb|EGG66246.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 21189] Length = 146 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|213028526|ref|ZP_03342973.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 48 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 C + +C L L KA+ +F L Y++ LV + K+ Sbjct: 3 CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 45 >gi|294849241|ref|ZP_06789984.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754] gi|294823773|gb|EFG40199.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754] Length = 146 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + Sbjct: 68 SADVSLATLYKHFVLEKERHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|302332307|gb|ADL22500.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus subsp. aureus JKD6159] Length = 146 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + + Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYKEK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|70727330|ref|YP_254246.1| hypothetical protein SH2331 [Staphylococcus haemolyticus JCSC1435] gi|68448056|dbj|BAE05640.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 146 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H++ +AE C++ + L ++ L ++++RG+ GG R Sbjct: 8 AVHVLSFLTKHSEEQFNSQDLAELTCLNPVQLRRVTTTLNNQQYIDSIRGKGGGYRANAH 67 Query: 70 ADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA----FFDVLT 123 IT+ + + + S + C + + T + K + Sbjct: 68 TPTITLDTLYQLFVLDKLPTQRIFTGSEESHCTISRNIATT--MNKYKEQETALALNFYR 125 Query: 124 QYSIECLVRN 133 +I +++ Sbjct: 126 NLTINDVIKE 135 >gi|258422782|ref|ZP_05685685.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257847013|gb|EEV71024.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|283469886|emb|CAQ49097.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ST398] Length = 146 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDR 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + + Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYKEK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|254498599|ref|ZP_05111319.1| truncated rrf2 family protein [Legionella drancourtii LLAP12] gi|254352190|gb|EET11005.1| truncated rrf2 family protein [Legionella drancourtii LLAP12] Length = 87 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 RPA +I++ ++ A EE EC + DC L G C + R A L S+ Sbjct: 3 RPATEISVSQIIFALEEHRGFTEC-SLQPNDCSLQGVCTIQGNWRLISQAIETALDSVSL 61 Query: 128 ECLVRNRSSIKKI 140 + L + + I Sbjct: 62 DTLAKPTLQARDI 74 >gi|82750300|ref|YP_416041.1| hypothetical protein SAB0545c [Staphylococcus aureus RF122] gi|283769750|ref|ZP_06342642.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|82655831|emb|CAI80233.1| probable DNA-binding protein [Staphylococcus aureus RF122] gi|283459897|gb|EFC06987.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|298693925|gb|ADI97147.1| hypothetical protein SAOV_0629c [Staphylococcus aureus subsp. aureus ED133] gi|323439450|gb|EGA97172.1| hypothetical protein SAO11_1751 [Staphylococcus aureus O11] gi|323442133|gb|EGA99767.1| hypothetical protein SAO46_1970 [Staphylococcus aureus O46] Length = 146 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV ++ T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGKDGGYLANDR 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + + Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYKEK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|21282279|ref|NP_645367.1| hypothetical protein MW0550 [Staphylococcus aureus subsp. aureus MW2] gi|49485461|ref|YP_042682.1| hypothetical protein SAS0554 [Staphylococcus aureus subsp. aureus MSSA476] gi|297208689|ref|ZP_06925117.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912780|ref|ZP_07130222.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH70] gi|21203716|dbj|BAB94415.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49243904|emb|CAG42329.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296886634|gb|EFH25539.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885884|gb|EFK81087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH70] Length = 146 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV ++ T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGKDGGYLSNDR 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125 + +++ + K E+ C + + T + N + Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYEQDEQNIIINFYKGK 127 Query: 126 SIECLVRN 133 +I+ ++ + Sbjct: 128 TIKDVIED 135 >gi|238026675|ref|YP_002910906.1| hypothetical protein bglu_1g10290 [Burkholderia glumae BGR1] gi|237875869|gb|ACR28202.1| Hypothetical protein bglu_1g10290 [Burkholderia glumae BGR1] Length = 145 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M+ + R + + VL + P IA + + + ++L L AG+ + G Sbjct: 1 MNTSSRFAFAVHVLALLSQQEGVPLSSEIIAGSVNTNPALIRRLLLRLAAAGLTRSQLGA 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116 GG L R D IT+LDV +A +++ A + DC + + SVL A Sbjct: 61 GGGALLAREPDSITLLDVYRAVDDAQLFALHREAPNPDCLVGRH--IQSVLSVYIDDARR 118 Query: 117 AFFDVLTQYSIECLVRN 133 A L ++ + + Sbjct: 119 AMEASLAARTLADVTAD 135 >gi|229073669|ref|ZP_04206783.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] gi|228709456|gb|EEL61516.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] Length = 104 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVG-- 103 L K+GIV +G+ G L + IT+LDV +A E E + + CP+ Sbjct: 3 LKKSGIVHVSQGKNG-AHLFKAPQFITLLDVYRAVEVVEKNKLFSFHENPNPMCPVGARI 61 Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131 L +L ++ + L +++ +V Sbjct: 62 HMVLELILIQSQEKMEEFLQNVTMQQVV 89 >gi|205372678|ref|ZP_03225489.1| transcriptional regulator [Bacillus coahuilensis m4-4] Length = 89 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 + LVKA +++ GR GG L + + IT+ +V +A F +C Sbjct: 1 MTHLVKAKLIQAKEGRDGGYYLMKSPEDITLFEVYEAMRAEPFPRGFLDVQSKECFAPS- 59 Query: 105 CGLTSVLRKALNAF----FDVLTQYSIECLV 131 L + L + ++ L+ Sbjct: 60 --TQDALFGLRDEMEGWLIAGLKEKTLADLL 88 >gi|255656743|ref|ZP_05402152.1| hypothetical protein CdifQCD-2_13861 [Clostridium difficile QCD-23m63] gi|296452428|ref|ZP_06894129.1| transcriptional regulator superfamily protein [Clostridium difficile NAP08] gi|296877777|ref|ZP_06901803.1| transcriptional regulator superfamily protein [Clostridium difficile NAP07] gi|296258758|gb|EFH05652.1| transcriptional regulator superfamily protein [Clostridium difficile NAP08] gi|296431228|gb|EFH17049.1| transcriptional regulator superfamily protein [Clostridium difficile NAP07] Length = 132 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--G 59 +++ DY IR++ + D P I + I L L+++L+ L I+ + G Sbjct: 2 ISEDVDYSIRIIRAIFNNGEDNPIDAKMILKNEEIPTLTLYRLLRKLCANNILTFNKEDG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117 ++ L D I++ +V+A + ++ +C + S+ +C + C + L + Sbjct: 62 KK--YMLNVSLDTISLRTIVEAIDGKIYINKCTRYVSNCSNC--LKGCKVNRELLEIEKE 117 Query: 118 FFDVLTQYSIECLVR 132 + +L++ SI ++ Sbjct: 118 IYKLLSRKSIRQILE 132 >gi|149204175|ref|ZP_01881143.1| transcriptional regulator, BadM/Rrf2 family protein [Roseovarius sp. TM1035] gi|149142617|gb|EDM30662.1| transcriptional regulator, BadM/Rrf2 family protein [Roseovarius sp. TM1035] Length = 131 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A H + P I++ + + + + + L +AGIV + RG GG R+ + +T+ Sbjct: 1 MAEH-EGPMTSEAISQCMGTNPVVVRRTMAFLREAGIVSSARGHAGGWRITADLEVVTLH 59 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + KA E A + C + S L L +A + ++ L + Sbjct: 60 QLHKALGEPAIFAIGNRTENPFCLVEQSVNAALEHTLEEAEALLLERFAHVTLADLAAD 118 >gi|229073754|ref|ZP_04206856.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] gi|228709362|gb|EEL61434.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185] Length = 144 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + ++L + P I I + IL L GI+ + Sbjct: 1 MKINISLTVASQILSILKKNPLTPFDSEFIGRTLSIHPKIIRGILLCLRDTGIIHNNH-K 59 Query: 61 RGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115 G L + IT+LDV ++ E + K +CP+ + L +L +A Sbjct: 60 GEGWYLIKDVHHITLLDVYRSVCRVEGEICSI--HENLKFNCPIGANIQFVLEIILIQAQ 117 Query: 116 NAFFDVLTQYSIECLVR 132 + +L ++ L+R Sbjct: 118 DEMEQILENVTMGQLIR 134 >gi|296275510|ref|ZP_06858017.1| hypothetical protein SauraMR_04160 [Staphylococcus aureus subsp. aureus MR1] Length = 146 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG L Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGY-LAND 66 Query: 70 ADQI-TILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQ 124 ++ + K E+ C + + T + N + + Sbjct: 67 QSAYVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNE 126 Query: 125 YSIECLVRN 133 +I+ ++ + Sbjct: 127 KTIKDVIED 135 >gi|228924839|ref|ZP_04087995.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834814|gb|EEM80297.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 102 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVG-- 103 + K+GIV +G+ G L + IT+LDV +A E E + + CP+ Sbjct: 1 MKKSGIVHVTQGKNG-THLFKDPKFITLLDVYRAVEVVEKNKLFSFHENPNPMCPVGARI 59 Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131 L +L ++ + L +++ +V Sbjct: 60 HMVLELILIQSQEKMEEFLQNVTMQQVV 87 >gi|257457619|ref|ZP_05622786.1| transcriptional regulator family protein [Treponema vincentii ATCC 35580] gi|257445005|gb|EEV20081.1| transcriptional regulator family protein [Treponema vincentii ATCC 35580] Length = 110 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M ++ R + L+ DY IAE+ ++ + + KIL L KAG+V+T G Sbjct: 18 MKISVRFTAAVHTLLCILYFEKDYRVTSDFIAESTGVNAVIIRKILLQLQKAGLVKTAAG 77 Query: 60 RRG 62 G Sbjct: 78 VGG 80 >gi|293605494|ref|ZP_06687876.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292816222|gb|EFF75321.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 138 Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 2/113 (1%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 P + + + + +I+ L G+V + +G GG L + +T+ D+ +A Sbjct: 6 GPMTSEYLGRVMQTNPVVIRRIMAGLRDQGLVSSEKGHGGGWTLSCDFNAVTLRDIYEAL 65 Query: 83 EESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 A S C + + L A + Q ++ L R+ Sbjct: 66 GAPEIFAMGNRSDAPGCLVEVAVNKALDGAFEAAEALLMERFGQVTLAALSRD 118 >gi|314932822|ref|ZP_07840191.1| putative DNA-binding protein [Staphylococcus caprae C87] gi|313654503|gb|EFS18256.1| putative DNA-binding protein [Staphylococcus caprae C87] Length = 120 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 35/71 (49%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H + ++AE C++ + L +++ L ++ TVRG+ GG + + Sbjct: 8 AVHVLSFLTKHKNEKFNSKELAELTCLNPVQLRRVVANLSDQQLITTVRGKDGGYKANQY 67 Query: 70 ADQITILDVVK 80 + + ++ + Sbjct: 68 TSTVNLAELYQ 78 >gi|327466800|gb|EGF12324.1| hypothetical protein HMPREF9386_2385 [Streptococcus sanguinis SK330] Length = 128 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89 I+E+ S KI+ L ++ T G GG+ + R +IT+LD+ +A E++ + Sbjct: 4 ISESLGFSYSTTVKIIDKLKSENLIITKEGINGGISVVRSLSEITMLDIFEAIEKNNPLF 63 Query: 90 ECFASH---KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + + + + + + L + L+Q ++ LV S Sbjct: 64 KIQYNTSLLGNPIKRIEN-NIRNRLTDSEKMLRVFLSQVFVQDLVGEESQ 112 >gi|126700375|ref|YP_001089272.1| hypothetical protein CD2759 [Clostridium difficile 630] gi|254976353|ref|ZP_05272825.1| hypothetical protein CdifQC_13611 [Clostridium difficile QCD-66c26] gi|255093738|ref|ZP_05323216.1| hypothetical protein CdifC_13921 [Clostridium difficile CIP 107932] gi|255101929|ref|ZP_05330906.1| hypothetical protein CdifQCD-6_14031 [Clostridium difficile QCD-63q42] gi|255307798|ref|ZP_05351969.1| hypothetical protein CdifA_14501 [Clostridium difficile ATCC 43255] gi|255315490|ref|ZP_05357073.1| hypothetical protein CdifQCD-7_14099 [Clostridium difficile QCD-76w55] gi|255518153|ref|ZP_05385829.1| hypothetical protein CdifQCD-_13638 [Clostridium difficile QCD-97b34] gi|255651269|ref|ZP_05398171.1| hypothetical protein CdifQCD_13873 [Clostridium difficile QCD-37x79] gi|260684333|ref|YP_003215618.1| hypothetical protein CD196_2600 [Clostridium difficile CD196] gi|260687992|ref|YP_003219126.1| hypothetical protein CDR20291_2647 [Clostridium difficile R20291] gi|306521110|ref|ZP_07407457.1| hypothetical protein CdifQ_16021 [Clostridium difficile QCD-32g58] gi|115251812|emb|CAJ69647.1| Transcriptional regulator, Rrf2 family [Clostridium difficile] gi|260210496|emb|CBA64986.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260214009|emb|CBE06135.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 132 Score = 57.3 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 61/135 (45%), Gaps = 9/135 (6%) Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--G 59 +++ DY IR++ + D P I ++ I L L+++L+ L I+ + G Sbjct: 2 ISEDVDYSIRIIRAIFNNGEDKPIDAKMILKSEDIPILTLYRLLRKLCANNILTFNKEDG 61 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117 + L D I++ +V+ + ++ +C + S+ +C + C + L + Sbjct: 62 KT--YMLNVSLDTISLRTIVEVIDGKIYINKCTRYVSNCSNC--LKGCKVNRELLEIEKE 117 Query: 118 FFDVLTQYSIECLVR 132 + +L++ SI ++ Sbjct: 118 IYKLLSRKSIRQILE 132 >gi|257793177|ref|ZP_05642156.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407662|ref|ZP_05680797.1| transcriptional regulator [Staphylococcus aureus A9763] gi|282928731|ref|ZP_06336326.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|257787149|gb|EEV25489.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840742|gb|EEV65200.1| transcriptional regulator [Staphylococcus aureus A9763] gi|282589614|gb|EFB94701.1| conserved hypothetical protein [Staphylococcus aureus A10102] Length = 138 Score = 56.9 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 4/127 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG + Sbjct: 1 MHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQS 60 Query: 71 DQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYS 126 +++ + K E+ C + + T + N + + + Sbjct: 61 ADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNEKT 120 Query: 127 IECLVRN 133 I+ ++ + Sbjct: 121 IKDVIED 127 >gi|314937081|ref|ZP_07844428.1| probable DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|313655700|gb|EFS19445.1| probable DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 149 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 4/136 (2%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 HL + + VL + H++ +A+ C++ + L ++ L + ++T RG+ Sbjct: 3 HLNLEFNIAVHVLSFLVKHDNQQFSSQTLAKLTCLNPVQLRRVTTVLNQYQFIKTSRGKN 62 Query: 62 GGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117 GG I + + + E+ + DC + + ++ +K Sbjct: 63 GGYSANHSTASIKLSVLYRIFVLEKDSQQRIFTGHEQSDCEISRNIAKTMSHYNQKEHRV 122 Query: 118 FFDVLTQYSIECLVRN 133 + +I ++ + Sbjct: 123 ILNFYDTLTINDVIND 138 >gi|87159993|ref|YP_493280.1| hypothetical protein SAUSA300_0577 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194356|ref|YP_499149.1| hypothetical protein SAOUHSC_00582 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87125967|gb|ABD20481.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201914|gb|ABD29724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|320141829|gb|EFW33657.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MRSA177] Length = 138 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG + Sbjct: 1 MHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQS 60 Query: 71 DQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYS 126 +++ + K E+ C + + T + N + + Sbjct: 61 ADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGKT 120 Query: 127 IECLVRN 133 I+ ++ + Sbjct: 121 IKDVIED 127 >gi|327311265|ref|YP_004338162.1| signal-transduction protein [Thermoproteus uzoniensis 768-20] gi|326947744|gb|AEA12850.1| signal-transduction protein [Thermoproteus uzoniensis 768-20] Length = 291 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ L+ + P + +IAEA + E ++ I+ L G+V + G GG A Sbjct: 17 LKTLVDIYSRENIPVKSKEIAEALKVHEGYIRNIMSVLKSMGLVISKAGPHGGYVPTSKA 76 Query: 71 DQI 73 I Sbjct: 77 YDI 79 >gi|27467284|ref|NP_763921.1| hypothetical protein SE0366 [Staphylococcus epidermidis ATCC 12228] gi|27314827|gb|AAO03963.1|AE016745_62 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|329723148|gb|EGG59680.1| transcriptional regulator [Staphylococcus epidermidis VCU144] gi|329734079|gb|EGG70398.1| transcriptional regulator [Staphylococcus epidermidis VCU028] Length = 140 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 2/95 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + A H+ ++A+ C++ + L ++L L + ++ RG+ GG + + Sbjct: 8 AVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGKAGGYQANQH 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLV 102 Q+ + + + +++ C + Sbjct: 68 TAQVDLAKLYQHFVLDKNNSQRRFTGDSDSHCQIS 102 >gi|300114145|ref|YP_003760720.1| ribonuclease BN [Nitrosococcus watsonii C-113] gi|299540082|gb|ADJ28399.1| ribonuclease BN [Nitrosococcus watsonii C-113] Length = 455 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 14/135 (10%) Query: 8 DYGIRVLMYC--AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 G+ +L A H P + +A+ + + I++ L +A +V G Sbjct: 319 RVGLLILARVGEAFHQGCPPPTLENLAKHFSLPSYLIEDIIESLKRARLVTATGAEPPGY 378 Query: 65 RLCRPADQITI---LDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 L + +T+ L +++ EE F E + + ++ K A Sbjct: 379 LLSKDPATVTVRKVLAIIRQAEEQKFPLESISLKSP--------AVDGIMEKIEQALDQA 430 Query: 122 LTQYSIECLVRNRSS 136 + +++ L+ ++ Sbjct: 431 MKGATLKDLIGDKRE 445 >gi|322689594|ref|YP_004209328.1| hypothetical protein BLIF_1411 [Bifidobacterium longum subsp. infantis 157F] gi|320460930|dbj|BAJ71550.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 95 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 58 RGRRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 RG GG L R +IT+LD+ +A E + V K CP+ + + VL+ A Sbjct: 3 RG-NGGAELARTPKEITLLDIYQAVESTNLDDVIGIHERGKHTCPVARN--IHDVLKDAY 59 Query: 116 ----NAFFDVLTQYSIECLVRNRSS 136 A D + + ++ ++ + + Sbjct: 60 APVAKAMSDSMREVTLANMLADYRN 84 >gi|317507858|ref|ZP_07965558.1| hypothetical protein HMPREF9336_01930 [Segniliparus rugosus ATCC BAA-974] gi|316253831|gb|EFV13201.1| hypothetical protein HMPREF9336_01930 [Segniliparus rugosus ATCC BAA-974] Length = 62 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS--IKKI-FNAG 144 EC CPL +C L LR+A AFF VL + ++ +VR + ++++ +AG Sbjct: 2 EC--EGADPCPLRQACRLRGALRQAQEAFFQVLDRQTVADMVRVPTEPILRELVLSAG 57 >gi|301059962|ref|ZP_07200842.1| HTH-type transcriptional regulator CymR domain protein [delta proteobacterium NaphS2] gi|300445934|gb|EFK09819.1| HTH-type transcriptional regulator CymR domain protein [delta proteobacterium NaphS2] Length = 42 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFL 41 M L+ R+ YG R+++ A ++ P RI IAE IS +L Sbjct: 1 MKLSTRSRYGTRMVLDLAKRFDEGPVRIGDIAEREEISVKYL 42 >gi|57866192|ref|YP_187839.1| hypothetical protein SERP0243 [Staphylococcus epidermidis RP62A] gi|242241934|ref|ZP_04796379.1| transcription regulator [Staphylococcus epidermidis W23144] gi|251810017|ref|ZP_04824490.1| transcription regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874947|ref|ZP_06283822.1| transcriptional regulator [Staphylococcus epidermidis SK135] gi|293368048|ref|ZP_06614680.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|57636850|gb|AAW53638.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|242234609|gb|EES36921.1| transcription regulator [Staphylococcus epidermidis W23144] gi|251806468|gb|EES59125.1| transcription regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296275|gb|EFA88794.1| transcriptional regulator [Staphylococcus epidermidis SK135] gi|291317738|gb|EFE58152.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329737821|gb|EGG74056.1| transcriptional regulator [Staphylococcus epidermidis VCU045] Length = 140 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 35/71 (49%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + A H+ ++A+ C++ + L ++L L + ++ RG+ GG + + Sbjct: 8 AVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGKAGGYQANQH 67 Query: 70 ADQITILDVVK 80 Q+ + + + Sbjct: 68 TAQVDLAKLYQ 78 >gi|169333849|ref|ZP_02861042.1| hypothetical protein ANASTE_00235 [Anaerofustis stercorihominis DSM 17244] gi|169259414|gb|EDS73380.1| hypothetical protein ANASTE_00235 [Anaerofustis stercorihominis DSM 17244] Length = 133 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TD I+++MY I D +I + L ++ LV+A +++ +G+ Sbjct: 1 MKFDSKTDLAIKIIMYLFIEQDSK-SFEEIHRVIGTRKSILLSVIDRLVEAKVLK--KGK 57 Query: 61 RGG-VRLCRPADQITILDVVKATEESFFVAE 90 L + AD+I+I D++ + S V + Sbjct: 58 DNLTYYLLKDADEISIYDLIILFDGSINVLD 88 >gi|163814554|ref|ZP_02205943.1| hypothetical protein COPEUT_00705 [Coprococcus eutactus ATCC 27759] gi|158450189|gb|EDP27184.1| hypothetical protein COPEUT_00705 [Coprococcus eutactus ATCC 27759] Length = 139 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + +++L C ++ D + IA + + L K ++ + G Sbjct: 1 MRFSTKYTLALQILTICYLYKDEKITSNFIAAHTGADASIIRYTMLDLKKKDLIVSKPGP 60 Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87 GG L ++T+ DV + E Sbjct: 61 -GGTNLNCDLSKLTLYDVYELVAEPSD 86 >gi|282925438|ref|ZP_06333093.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus aureus A9765] gi|282592532|gb|EFB97543.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus aureus A9765] Length = 116 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 2/101 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG Sbjct: 8 AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT 108 + +++ + K E+ C + + T Sbjct: 68 SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATT 108 >gi|169838483|ref|ZP_02871671.1| hypothetical protein cdivTM_15506 [candidate division TM7 single-cell isolate TM7a] Length = 90 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 58 RGRRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVL 111 +G GG L R Q+T+ DVV A E + E + + +G + V Sbjct: 5 QGAGGGFALAREMKQVTLHDVVLAIEGEAPFFQPQGIIERVFATRRRQVEIGMNMIEKVF 64 Query: 112 RKALNAFFDVLTQYSIECLVRN 133 +A + D L ++E + + Sbjct: 65 SEAQQQWSDYLKTVTLEDIAKE 86 >gi|329297808|ref|ZP_08255144.1| DNA-binding protein [Plautia stali symbiont] Length = 78 Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L++ H +A+ + + + +++ L + G + + +G GG L Sbjct: 10 SLHALIHLDRHVKR-ATSDAMAKMLGTNPVVVRRMMSGLREKGYLVSEKGHGGGWELRAD 68 Query: 70 ADQITILDVV 79 IT+L+V Sbjct: 69 LRDITLLNVY 78 >gi|300777515|ref|ZP_07087373.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300503025|gb|EFK34165.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 145 Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 6/144 (4%) Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + + Y I+ + A I I+E F KILQ L K ++ + +G Sbjct: 1 MLIFSNTCQYAIKACIVLATER-KKIGIIDISEQIGTPTYFTSKILQQLTKKQLISSGKG 59 Query: 60 RRGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 + GG L + +TI D+ + E + C K C C + + Sbjct: 60 KGGGFFLTDEQFENLTIKDIYENFEGKEVLTSCLLGLK-QCNGDNPCPIHHLAVAVKEKV 118 Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142 ++ +Y I+ L ++ S+ ++ Sbjct: 119 L-IMFKYKIKDL-KDLGSVMQMMG 140 >gi|119872079|ref|YP_930086.1| signal transduction protein [Pyrobaculum islandicum DSM 4184] gi|119673487|gb|ABL87743.1| putative signal transduction protein with CBS domains [Pyrobaculum islandicum DSM 4184] Length = 286 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 ++VL+ + P + IA A I E ++ +L L G+V + G GG Sbjct: 12 LKVLVELYNKGNTPVKSKDIASALGIHEGYVRNMLSILKSMGLVISKAGPHGGY 65 >gi|327463097|gb|EGF09418.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1] Length = 96 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTS 109 ++ RG GG + + I++LDV A E +S + DCP+ + + + Sbjct: 1 MITVARG-TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHN 57 Query: 110 VLRK----ALNAFFDVLTQYSIECLVR 132 VL A L Q S+ +V Sbjct: 58 VLDDRLAAIQAAMEAELAQTSLAEVVA 84 >gi|292493155|ref|YP_003528594.1| ribonuclease BN [Nitrosococcus halophilus Nc4] gi|291581750|gb|ADE16207.1| ribonuclease BN [Nitrosococcus halophilus Nc4] Length = 456 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 24/145 (16%) Query: 2 HLTK--RTDYGIRVLMYC--AIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L+ + G+ +L+ A H + P ++ ++E + + ++L+PL KA ++ Sbjct: 311 RLSNRLKERVGLLILVQVGEAFHRGHSPPKLEGLSEHLGLPSYLIEELLEPLKKAHLITE 370 Query: 57 VRGRRGG----VRLCRPADQITI---LDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109 G L + D I + LD+++ EE F E + Sbjct: 371 T----GDEPPSYLLRKDPDTIPVRKALDILRQAEEQDFPMEQATLKVP--------AVEG 418 Query: 110 VLRKALNAFFDVLTQYSIECLVRNR 134 V+ K A L + +++ L+R + Sbjct: 419 VMEKIEQALDQALEEATLKDLIRGQ 443 >gi|171186006|ref|YP_001794925.1| signal transduction protein [Thermoproteus neutrophilus V24Sta] gi|170935218|gb|ACB40479.1| putative signal transduction protein with CBS domains [Thermoproteus neutrophilus V24Sta] Length = 286 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 ++ L+ + P + IA A I E ++ +L L G+V + G GG Sbjct: 12 LKALVELYNKENSPVKSRDIANALGIHEGYVRNMLSILKSMGLVISKAGPHGGY 65 >gi|260584120|ref|ZP_05851868.1| transcriptional regulator [Granulicatella elegans ATCC 700633] gi|260158746|gb|EEW93814.1| transcriptional regulator [Granulicatella elegans ATCC 700633] Length = 96 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--G 106 A I+ + +G+ G L + +++L++ AT+ E + + ++CP+ Sbjct: 1 AEIISSHQGKSG-YELTKSPKDLSLLEIYFATQEVERISLFPVHQNRNLNCPVGRYIEGA 59 Query: 107 LTSVLRKALNAFFDVLTQYSIECLVRN 133 ++ + L +++ ++ N Sbjct: 60 ISPIFSDVEEELERELKNKTLKDVIDN 86 >gi|291518906|emb|CBK74127.1| Predicted transcriptional regulator [Butyrivibrio fibrisolvens 16/4] Length = 91 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV 110 ++ +RG GG+ L R IT DV +A E E + S +CP+ + + S+ Sbjct: 18 LINVIRG-TGGIELTRDLKDITFYDVYQAIEPLEDGDLFRFHESPNPECPVGRN--IHSL 74 Query: 111 LRKALNAFFDVLTQ 124 L L + + + Sbjct: 75 LDDKLKSIQEAMES 88 >gi|148262717|ref|YP_001229423.1| putative ribonuclease BN [Geobacter uraniireducens Rf4] gi|146396217|gb|ABQ24850.1| tRNA-processing RNAse BN [Geobacter uraniireducens Rf4] Length = 449 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P ++A+ I + ++L L + G + G + R DQIT+ +V+ + Sbjct: 337 PLTSERLAKELDIPVKLVRELLTQLAENGYLVATAGDEPSYQPARELDQITVNEVLLSL- 395 Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 + G + +L +A A LT +++ LV + + + Sbjct: 396 ---------RDYGSHGRFTGEGNVQEILSRANGAAAATLTGMTLKELVASSPKKENV 443 >gi|77165113|ref|YP_343638.1| ribonuclease BN [Nitrosococcus oceani ATCC 19707] gi|254433289|ref|ZP_05046797.1| Ribonuclease BN-like family [Nitrosococcus oceani AFC27] gi|76883427|gb|ABA58108.1| tRNA-processing RNAse BN [Nitrosococcus oceani ATCC 19707] gi|207089622|gb|EDZ66893.1| Ribonuclease BN-like family [Nitrosococcus oceani AFC27] Length = 447 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 11/116 (9%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT---ILDVVK 80 P + + + + + I++ L A +V G L + +T +LD+++ Sbjct: 338 PPTLESLVKQLGLPGYLIEDIIESLKSARLVTETGAEPPGYLLSKDPATVTIRKVLDIIR 397 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 EE F E + ++ K A + + +++ L+ +R Sbjct: 398 RAEERQFPLESLLFKAP--------AVDGIMEKVEQALDQAMEKATLKDLIGDRQE 445 >gi|84497230|ref|ZP_00996052.1| putative transcriptional regulator [Janibacter sp. HTCC2649] gi|84382118|gb|EAP98000.1| putative transcriptional regulator [Janibacter sp. HTCC2649] Length = 332 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R L+ + + P ++A ++E + + L +AGI VE++RG GG L R Sbjct: 16 RALLTLEVLQNRPGVTAGELARRLGVTERATRRHIAILREAGIPVESMRGPHGGYTLGRG 75 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 A + V TE V SH G+ G + AL+ L Sbjct: 76 AALAPV--VFTETEALSLVMAVIDSHPSAASATGADGEADAVGSALDKVVRAL 126 >gi|18313985|ref|NP_560652.1| hypothetical protein PAE3319 [Pyrobaculum aerophilum str. IM2] gi|18161560|gb|AAL64834.1| conserved protein with 2 CBS domains [Pyrobaculum aerophilum str. IM2] Length = 286 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ L+ P + IA I E ++ +L L G+V + G GG A Sbjct: 12 LKALVELYNKEGAPVKSRDIANVLKIHEGYVRNMLSILKSMGLVISKAGPHGGYIPTSKA 71 Query: 71 DQI 73 I Sbjct: 72 TDI 74 >gi|319400096|gb|EFV88332.1| transcriptional regulator family protein [Staphylococcus epidermidis FRI909] Length = 140 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL + HN ++A+ C++ + L ++L L + ++ RG+ GG + Sbjct: 8 AVHVLCFLVQHNQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGKAGGYQANHH 67 Query: 70 ADQITILDVVK--ATEESFFVAECFASHKIDCPLV 102 Q+ + + + +++ C + Sbjct: 68 TAQVDLAKLYQHFVLDKNNSQRRFTGDSDSHCQIS 102 >gi|332362426|gb|EGJ40226.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 96 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTS 109 ++ RG GG + + I++LDV A E +S + DCP+ + + + Sbjct: 1 MITVARG-TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHN 57 Query: 110 VLRK----ALNAFFDVLTQYSIECLVR 132 VL A L Q S++ +V Sbjct: 58 VLDDRLAAIQAAMEAELAQTSLDEVVA 84 >gi|314935414|ref|ZP_07842767.1| putative HTH-type transcriptional regulator YffB [Staphylococcus hominis subsp. hominis C80] gi|313656749|gb|EFS20488.1| putative HTH-type transcriptional regulator YffB [Staphylococcus hominis subsp. hominis C80] Length = 107 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 5/93 (5%) Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGL 107 +V + G+ GG L + IT DV A E + + + C + Sbjct: 1 MVYSTTGKNGGFTLRKKLKDITFYDVFLAIEGRGNIFSSQHLLTNFLGEKEGHKAQQCNI 60 Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140 + L + L+ +++ + ++ + + Sbjct: 61 SIALNHIEHTLISTLSNINLDDIYQDIIKLYNL 93 >gi|271966049|ref|YP_003340245.1| helix-turn-helix type 11 domain-containing protein [Streptosporangium roseum DSM 43021] gi|270509224|gb|ACZ87502.1| helix-turn-helix, type 11 [Streptosporangium roseum DSM 43021] Length = 333 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R + ++A ++E + + L +AGI VE+ RG GG RL R Sbjct: 11 ALRAMEILRTRPG--VTAGELAACLGVTERAARRYVGILREAGIPVESARGPYGGYRLGR 68 Query: 69 ----PADQIT----ILDVVKATEESFFVAE 90 P T + V+ + A+ Sbjct: 69 GTKLPPVAFTEPEALGLVMAVLDGQPAAAD 98 >gi|75761769|ref|ZP_00741707.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490754|gb|EAO54032.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 116 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL--VKAGIVETVR 58 M ++ R G+ +L AI + IA + + + + +I + + AG+V+ Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITRHMLQAAAGLVDVQA 68 Query: 59 GRRG 62 G+ G Sbjct: 69 GKGG 72 >gi|146317858|ref|YP_001197570.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145688664|gb|ABP89170.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] Length = 105 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 47 PLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLV 102 L +AG+VE RG GG RL + DQIT+L V +A E E + C + Sbjct: 40 KLKEAGLVEVARGI-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVG 97 >gi|126460347|ref|YP_001056625.1| signal transduction protein [Pyrobaculum calidifontis JCM 11548] gi|126250068|gb|ABO09159.1| putative signal transduction protein with CBS domains [Pyrobaculum calidifontis JCM 11548] Length = 286 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 ++ L P + IA I E ++ +L L G+V + G GG Sbjct: 12 LKALAELYNKTGTPVKSRDIANVLGIHEGYVRNMLSILKSMGLVISKAGPHGGY 65 >gi|307594758|ref|YP_003901075.1| putative CBS domain-containing signal transduction protein [Vulcanisaeta distributa DSM 14429] gi|307549959|gb|ADN50024.1| putative signal transduction protein with CBS domains [Vulcanisaeta distributa DSM 14429] Length = 297 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 9 YG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 Y + L+ + + P + IAE I+E + + L G +E+ G GG Sbjct: 10 YASILNALVELYMASKKPVKSRDIAEKLGINEGTVRNSMVALRAMGYIESKTGPYGGY 67 >gi|169837450|ref|ZP_02870638.1| transcriptional regulator [candidate division TM7 single-cell isolate TM7a] Length = 63 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L+ + ++ A P +AE +S +L KI + LV A ++ + +G Sbjct: 1 MKLSGAVEQACCIMALLADPKRTTPITNDALAEKMAVSPTYLKKISRKLVVAQLITSAQG 60 Query: 60 RRG 62 G Sbjct: 61 AGG 63 >gi|313610676|gb|EFR85738.1| transcription regulator [Listeria monocytogenes FSL F2-208] Length = 103 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLT 123 L RP ++I++LDV K+ E + + DC + + LTS + Sbjct: 14 LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQKMELEME 73 Query: 124 QYSIECLVRNRSSIK 138 + ++ +VR+ S ++ Sbjct: 74 KIKLDSIVRDISVLE 88 >gi|311899574|dbj|BAJ31982.1| putative DeoR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 343 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 12 RVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R L I D P S+ +AE +++ + + L +AG+ V++ RG GG RL R Sbjct: 11 RALRALEILRDRPGTTSEQLAERLGVTDRAARRYVAILREAGVPVDSERGPYGGYRLGRG 70 Query: 70 AD--------QITILDVVKATEESFFVAE 90 A + + V+ + + Sbjct: 71 ARLAPVSFTQEEALGLVMAVLDGRPAATD 99 >gi|289193273|ref|YP_003459214.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus sp. FS406-22] gi|288939723|gb|ADC70478.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus sp. FS406-22] Length = 145 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA------DQI 73 H P I ++A+ I L ++ L G+VET +GR GGVRL + +I Sbjct: 13 HLKEPITIRELAKKLNIHPKNLDVKIRVLRDLGLVETKKGRNGGVRLTKEGLYLLEKGEI 72 Query: 74 TIL 76 T+ Sbjct: 73 TLG 75 >gi|229819240|ref|YP_002880766.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] gi|229565153|gb|ACQ79004.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] Length = 328 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 12 RVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68 R L+ + P ++ +A +SE + + L +AGI V + RGR GG R+ R Sbjct: 10 RALLALELIQGEPGTTAERLAGRLGVSERAARRYVGILREAGIPVVSERGRYGGYRIGRG 69 Query: 69 ---PADQIT----ILDVVKATEESFFVAE 90 P T + V+ + A+ Sbjct: 70 FRLPPLTFTDAEALGLVMAVLDGHHDAAD 98 >gi|302561579|ref|ZP_07313921.1| GntR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302479197|gb|EFL42290.1| GntR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 257 Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 23/134 (17%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD---- 71 + ++AE IS + L ++L+ L G+VE+ RGR GG L RP D Sbjct: 54 LVAGGERLPAERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRPTDTGEQ 113 Query: 72 -------QITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----- 117 ++ I DV++ E E C A D + L L A Sbjct: 114 ELRRRIAEVDIEDVLRFREVLEVGAAGLCAAHGLTD---ERAARLREALAGTQEAPLAEY 170 Query: 118 -FFDVLTQYSIECL 130 D L ++ L Sbjct: 171 RRLDTLFHLTLAEL 184 >gi|126347770|emb|CAJ89487.1| putative DeoR-family transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 323 Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 +R+L I ++AE +S + + + L + G +E VRG GG RL R Sbjct: 9 LRLLSILGI--GATLTAEELAERLGVSLRTVRRDIDTLRELGYEIEAVRGVGGGYRLGRA 66 >gi|295837109|ref|ZP_06824042.1| transcriptional regulator [Streptomyces sp. SPB74] gi|197697220|gb|EDY44153.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 323 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R L ++A ++E + + + L +AG+ VE+V G GG RL R Sbjct: 16 ALRTLDLLWERPGAG--AGELAGRLGVTERAVRRYVGMLREAGVPVESVPGPGGGYRLGR 73 Query: 69 PAD 71 A Sbjct: 74 GAR 76 >gi|294341336|emb|CAZ89752.1| putative transcriptional regulator [Thiomonas sp. 3As] Length = 164 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 3/134 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M T + + V++ A + + A ++ L + + L+ AG++ Sbjct: 1 MKPTHQEQLALEVMLALARARSGSASVRDLGAALQMAPSTLKTLFERLMDAGLLRCKSAP 60 Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118 L R IT D+V A+ + A + + + L L ALN Sbjct: 61 DDCYGLARAPRWITAADIVLASQQGPGGAAHGRLIGARNRASLEATALR-ALETALNRCS 119 Query: 119 FDVLTQYSIECLVR 132 + L +++ L R Sbjct: 120 LEFLQAITLQDLAR 133 >gi|239932304|ref|ZP_04689257.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291440669|ref|ZP_06580059.1| GntR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291343564|gb|EFE70520.1| GntR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 318 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPADQ 72 + + ++AE IS + L ++L+ L G+VE+ RGR GG L RP D Sbjct: 41 LVVGGERLPAERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRPTDT 97 >gi|257053172|ref|YP_003131005.1| Protein of unknown function DUF293 [Halorhabdus utahensis DSM 12940] gi|256691935|gb|ACV12272.1| Protein of unknown function DUF293 [Halorhabdus utahensis DSM 12940] Length = 178 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 26/133 (19%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR---- 65 + L+ +D P + ++IAE +E + ++ L G+V++V G RGG + Sbjct: 15 ALTTLVNEYAESDSPVKSARIAEQVNRTEGSVKNQMRKLSALGLVDSVPGPRGGYQPTEK 74 Query: 66 ----LCR----PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116 L R +++ + + + + H DC +A Sbjct: 75 AFQALERDQDADGEKVVVAQNFERVDVTVDEVTLTNVHHPTDC-------------RARV 121 Query: 117 AFFDVLTQYSIEC 129 F D+L I Sbjct: 122 HFQDILDGIDIGD 134 >gi|291545492|emb|CBL18600.1| hypothetical protein CK1_02420 [Ruminococcus sp. SR1/5] Length = 98 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLT 123 L +PADQIT+LD+ KA E + DC + + L + + + Sbjct: 12 LSKPADQITLLDIYKAVEGEKPLLHLDTHTNPDCGVGINIQLSLQEFYNEIQKTAEEKMN 71 Query: 124 QYSIECLVRNRSSIKKIFN 142 +++ ++ I N Sbjct: 72 MITLQDIINTYYQRTSILN 90 >gi|21225872|ref|NP_631651.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|256783087|ref|ZP_05521518.1| transcriptional regulator [Streptomyces lividans TK24] gi|289766970|ref|ZP_06526348.1| transcriptional regulator [Streptomyces lividans TK24] gi|11322399|emb|CAC16712.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289697169|gb|EFD64598.1| transcriptional regulator [Streptomyces lividans TK24] Length = 326 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 12 RVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68 R L I P + ++A ++E + + L +AGI VE+ RG GG RL R Sbjct: 10 RALRALEILRTRPTTTADELAVRLGVTERAARRYVGILKEAGIPVESARGPHGGYRLGRG 69 Query: 69 ---PADQIT----ILDVVKATEESFFVAE 90 P T + V+ A VA+ Sbjct: 70 TRLPPVHFTQAEALGLVMAALGGRPAVAD 98 >gi|332668652|ref|YP_004451659.1| helix-turn-helix type 11 domain-containing protein [Cellulomonas fimi ATCC 484] gi|332337689|gb|AEE44272.1| helix-turn-helix type 11 domain protein [Cellulomonas fimi ATCC 484] Length = 315 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 R L+ AI + ++ E +SE + + L +A I VE++RGR GG RL R Sbjct: 9 RALLALEAIQSHPGITADRLGERLGVSERAARRYVGMLREADIPVESLRGRYGGYRLGR 67 >gi|302533496|ref|ZP_07285838.1| GntR family transcriptional regulator [Streptomyces sp. C] gi|302442391|gb|EFL14207.1| GntR family transcriptional regulator [Streptomyces sp. C] Length = 255 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 + ++AE IS + L ++L+ L G+VE RGR GG L RP Sbjct: 53 GERLPPERELAERMGISRVTLREVLKVLQDQGLVEARRGRYGGTFVLARP 102 >gi|318057827|ref|ZP_07976550.1| helix-turn-helix type 11 domain-containing protein [Streptomyces sp. SA3_actG] Length = 315 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R L ++A ++E + + + L +AG+ VE+V G GG RL R Sbjct: 16 ALRTLDLLWERPG--LGAGELAGRLGVTERAVRRYVGMLREAGVPVESVPGPGGGYRLGR 73 Query: 69 PAD 71 A Sbjct: 74 GAR 76 >gi|333025101|ref|ZP_08453165.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332744953|gb|EGJ75394.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 315 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R L ++A ++E + + + L +AG+ VE+V G GG RL R Sbjct: 16 ALRTLDLLWERPG--LGAGELAGRLGVTERAVRRYVGMLREAGVPVESVPGPGGGYRLGR 73 Query: 69 PAD 71 A Sbjct: 74 GAR 76 >gi|145591936|ref|YP_001153938.1| signal transduction protein [Pyrobaculum arsenaticum DSM 13514] gi|145283704|gb|ABP51286.1| putative signal transduction protein with CBS domains [Pyrobaculum arsenaticum DSM 13514] Length = 286 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 ++ L+ + P + IA + I E ++ +L L G+V + G GG Sbjct: 12 LKTLVELYNKENAPIKSRDIANSLKIHEGYVRNMLSILKSMGLVVSKAGPHGGY 65 >gi|291301151|ref|YP_003512429.1| helix-turn-helix type 11 domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570371|gb|ADD43336.1| Helix-turn-helix type 11 domain protein [Stackebrandtia nassauensis DSM 44728] Length = 321 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R L ++AE ++E + + L +AGI V++ RG GG RL R Sbjct: 11 ALRTLEILQARPG--TTAGELAERLGVTERAARRYVGILREAGIPVDSARGIYGGYRLGR 68 >gi|256389557|ref|YP_003111121.1| hypothetical protein Caci_0327 [Catenulispora acidiphila DSM 44928] gi|256355783|gb|ACU69280.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila DSM 44928] Length = 339 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 RVL + + ++IAE + + + ++ L++ I VE+VRGR GG RL R Sbjct: 7 RVLTLLELLQSGGVRTAAEIAERLGVDARTVRRYVEQLLELEIPVESVRGRYGGYRLAR 65 >gi|256810394|ref|YP_003127763.1| BadM/Rrf2 family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256793594|gb|ACV24263.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus fervens AG86] Length = 145 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA------DQI 73 H P I ++A+ + L ++ L G+VET +GR GGVRL R +I Sbjct: 13 HLKEPITIRELAKKLNMHPKNLDVKIRVLRDLGLVETKKGRNGGVRLTREGLYLLEKGEI 72 Query: 74 TIL 76 T+ Sbjct: 73 TLG 75 >gi|325968965|ref|YP_004245157.1| signal transduction protein with CBS domains [Vulcanisaeta moutnovskia 768-28] gi|323708168|gb|ADY01655.1| putative signal transduction protein with CBS domains [Vulcanisaeta moutnovskia 768-28] Length = 297 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 9 YG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 Y + L+ + + P + IAE I+E + + L G +E+ G GG Sbjct: 10 YASILNALVELYMMSKRPVKSRDIAEKLSINEGTVRNSMVALRAMGYIESKTGPYGGY 67 >gi|330721757|gb|EGG99748.1| hypothetical protein imdm_738 [gamma proteobacterium IMCC2047] Length = 132 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query: 8 DYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + V++ A + + Q+A + ++L L K ++ G+ Sbjct: 4 RLALAVMLNIARNYYRDKSALTNKQLAIRLRTPSDIVRQVLSALEKQSLISPTNGKVVRY 63 Query: 65 RLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 +P D++++ DV+ A E + + + ++ + + Sbjct: 64 LPAKPLDEMSVADVLHAVRHANEDRHLNPSMLPQDQE--------VDTIFETLNSTIVET 115 Query: 122 LTQYSIECLVRNRSS 136 Q +I+ LV+ Sbjct: 116 FAQQTIKQLVKEEKD 130 >gi|284043663|ref|YP_003394003.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947884|gb|ADB50628.1| GntR domain protein [Conexibacter woesei DSM 14684] Length = 261 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 D S++AE IS+ L + L+ L +AG++ RG GG+ L Sbjct: 40 REGDRLPNESELAEQLAISKPTLRQALRVLERAGLIAVKRGAGGGIFLA 88 >gi|297204698|ref|ZP_06922095.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197710770|gb|EDY54804.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 323 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R L ++A + ++E + + L +AGI V + RG GG RL R Sbjct: 11 ALRTL-EILQSRTAGVTADELAASLGVTERAARRYVAILREAGIPVHSARGPYGGYRLGR 69 Query: 69 PAD 71 A Sbjct: 70 GAR 72 >gi|238059897|ref|ZP_04604606.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881708|gb|EEP70536.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 327 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 11/90 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R L + Q+A ++E + ++ L +AGI +E+VRG GG RL R Sbjct: 11 ALRALEILQARSGA--TADQLASLLGVTERAARRYVEILREAGIPIESVRGPYGGYRLGR 68 Query: 69 ----PA----DQITILDVVKATEESFFVAE 90 P + + V+ + + Sbjct: 69 GTRLPPVVFTQEQALGLVMAVLDGQPAAID 98 >gi|15668416|ref|NP_247212.1| hypothetical protein MJ_0241 [Methanocaldococcus jannaschii DSM 2661] gi|2495873|sp|Q57693|Y241_METJA RecName: Full=Uncharacterized protein MJ0241 gi|1499019|gb|AAB98229.1| hypothetical protein MJ_0241 [Methanocaldococcus jannaschii DSM 2661] Length = 145 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA------DQI 73 H P I ++A+ + L ++ L G+VET +GR GGVRL + +I Sbjct: 13 HLKEPITIKELAKKLNMHPKNLDVKIRVLRDLGLVETKKGRNGGVRLTKEGLYLLEKGEI 72 Query: 74 TIL 76 T+ Sbjct: 73 TLG 75 >gi|294811670|ref|ZP_06770313.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294324269|gb|EFG05912.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 286 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 ++AE IS + L ++L+ L G+VE+ RGR GG L RP Sbjct: 94 RELAERMGISRVTLREVLKVLADQGLVESRRGRYGGTFVLPRP 136 >gi|108797169|ref|YP_637366.1| GntR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866254|ref|YP_936206.1| GntR family transcriptional regulator [Mycobacterium sp. KMS] gi|108767588|gb|ABG06310.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS] gi|119692343|gb|ABL89416.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS] Length = 260 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R++ I +AE S L ++L L +AG+V V GR GG+ + Sbjct: 11 RIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHG 70 Query: 70 ADQITILDVV 79 + + DVV Sbjct: 71 QVERNLADVV 80 >gi|254392829|ref|ZP_05007999.1| GntR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326440146|ref|ZP_08214880.1| GntR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706486|gb|EDY52298.1| GntR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 273 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 ++AE IS + L ++L+ L G+VE+ RGR GG L RP Sbjct: 81 RELAERMGISRVTLREVLKVLADQGLVESRRGRYGGTFVLPRP 123 >gi|126432791|ref|YP_001068482.1| GntR family transcriptional regulator [Mycobacterium sp. JLS] gi|126232591|gb|ABN95991.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS] Length = 260 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R++ + +AE S L ++L L +AG+V V GR GG+ + Sbjct: 11 RIVADINAGVPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHG 70 Query: 70 ADQITILDVV 79 + + DVV Sbjct: 71 QVERNLADVV 80 >gi|297155966|gb|ADI05678.1| GntR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 267 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +R+L + + ++AE IS + L ++L+ L G+VE+ RGR GG Sbjct: 36 LRILRLGLVPEGERLPSERELAERLRISRVTLREVLKVLADQGLVESRRGRYGG 89 >gi|302525067|ref|ZP_07277409.1| GntR-family transcriptional regulator [Streptomyces sp. AA4] gi|302433962|gb|EFL05778.1| GntR-family transcriptional regulator [Streptomyces sp. AA4] Length = 240 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV----RLCRPADQITIL 76 D ++AE +S + L + ++ L AG VE+ RGR GG +L PA++ + Sbjct: 42 GDRLPSERELAERLGVSRVTLREAIRALADAGYVESRRGRYGGTFVNEKLPEPAERA-VG 100 Query: 77 DV 78 +V Sbjct: 101 EV 102 >gi|284162807|ref|YP_003401430.1| TrmB family transcriptional regulator [Archaeoglobus profundus DSM 5631] gi|284012804|gb|ADB58757.1| transcriptional regulator, TrmB [Archaeoglobus profundus DSM 5631] Length = 300 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ P + +I+E + + +Q L G+VE G +GG R Sbjct: 13 LNALITLYRKKGLPVKGEEISELINRNPGTVRNQMQALRALGLVEGAPGPKGGYR 67 >gi|284172627|ref|YP_003406009.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM 5511] gi|284017387|gb|ADB63336.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM 5511] Length = 177 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +R L ++ + IAE + + +Q L +VE V G +GG + Sbjct: 14 LRALTNLHKKSEDTVKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|297198462|ref|ZP_06915859.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297147101|gb|EFH28484.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 245 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPADQI 73 + ++AE IS + L ++L+ L G+VE+ RGR GG L R D + Sbjct: 45 GERLPAERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRTPDAV 98 >gi|269128041|ref|YP_003301411.1| GntR domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312999|gb|ACY99373.1| GntR domain protein [Thermomonospora curvata DSM 43183] Length = 254 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQIT 74 H + ++A +S + L + ++ L + G VE+ RGR GG R RP Sbjct: 51 AHGERLPPERELAPRLGVSRVTLREAIRALQQEGYVESRRGRSGGTFVIYRTPRPQS--- 107 Query: 75 ILDVVKATEESFF 87 D+ + E Sbjct: 108 -GDLARVAEGQVE 119 >gi|221233070|ref|YP_002515506.1| Rrf2 family protein [Caulobacter crescentus NA1000] gi|220962242|gb|ACL93598.1| Rrf2 family protein [Caulobacter crescentus NA1000] Length = 140 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 18 AIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 A D +++A S + + ++ L KAG++ G GG L +PA+ I Sbjct: 22 AFSADRAVASAELA----ASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAETI 77 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLV 131 T+ V++A + CP+ + + + A A + L+Q ++ L+ Sbjct: 78 TLDVVLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRAAILSADQAAAERLSQITVADLL 136 >gi|16124387|ref|NP_418951.1| hypothetical protein CC_0132 [Caulobacter crescentus CB15] gi|13421241|gb|AAK22119.1| conserved hypothetical protein [Caulobacter crescentus CB15] Length = 153 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 18 AIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 A D +++A S + + ++ L KAG++ G GG L +PA+ I Sbjct: 35 AFSADRAVASAELA----ASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAETI 90 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLV 131 T+ V++A + CP+ + + + A A + L+Q ++ L+ Sbjct: 91 TLDVVLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRAAILSADQAAAERLSQITVADLL 149 >gi|114570135|ref|YP_756815.1| helix-turn-helix, type 11 domain-containing protein [Maricaulis maris MCS10] gi|114340597|gb|ABI65877.1| Helix-turn-helix, type 11 domain protein [Maricaulis maris MCS10] Length = 244 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 11 IRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +R + A+ D +S +A +SE + + L + + G+ +++ RGR GGVRL Sbjct: 10 LRRMDMLAVQLKQDGLCTVSDLARQHDVSERTIARDLLLMREQGLPIDSDRGRGGGVRLD 69 Query: 68 RP 69 R Sbjct: 70 RN 71 >gi|20090252|ref|NP_616327.1| hypothetical protein MA1391 [Methanosarcina acetivorans C2A] gi|19915246|gb|AAM04807.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 291 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ D + +IAE + + +Q L G+VE V G +GG + Sbjct: 13 ALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALGLVEGVPGPKGGYK 65 >gi|297195400|ref|ZP_06912798.1| GntR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152768|gb|EDY63139.2| GntR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 253 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 ++AE IS + L ++L+ L G+VE+ RGR GG L RP Sbjct: 61 RELAERMGISRVTLREVLKVLTDQGLVESRRGRYGGTFVLHRP 103 >gi|284165340|ref|YP_003403619.1| hypothetical protein Htur_2063 [Haloterrigena turkmenica DSM 5511] gi|284014995|gb|ADB60946.1| protein of unknown function UPF0074 [Haloterrigena turkmenica DSM 5511] Length = 194 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPADQ 72 + P R IA + + + + L + +VE VRG +GG R L R D+ Sbjct: 25 ESPVRAKTIAAELGLETESVRRQMGHLRELNLVEGVRGPKGGYRPTDIAYSVLGRRPDE 83 >gi|118472184|ref|YP_884683.1| GntR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173471|gb|ABK74367.1| transcriptional regulator, GntR family protein [Mycobacterium smegmatis str. MC2 155] Length = 259 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 +AE S L ++L L +AG+V V GR GG+ + + + DVV Sbjct: 29 RDLAEKYGTSRSSLRQVLAALEEAGLVHRVIGRSGGIFISHGQVERNLSDVV 80 >gi|145221826|ref|YP_001132504.1| UbiC transcription regulator-associated domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145214312|gb|ABP43716.1| transcriptional regulator, GntR family [Mycobacterium gilvum PYR-GCK] Length = 272 Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R++ ++AE S L ++L L +AG+V+ V GR GG+ + Sbjct: 23 RIVADINAGKPGTKLGSERELAERYRTSRSSLRQVLAALEEAGLVDRVIGRSGGIFISHA 82 Query: 70 ADQITILDVV 79 Q ++ DVV Sbjct: 83 QVQRSLTDVV 92 >gi|307942960|ref|ZP_07658305.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307773756|gb|EFO32972.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 351 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 + +L+ + + +AE +S +++ + L G+ VE RG GG RL + Sbjct: 22 ALAILLLMS--GGKLVSATTLAERFGVSLRTIYRDIDRLNALGVPVEAARGAEGGYRLAK 79 >gi|119719850|ref|YP_920345.1| signal transduction protein [Thermofilum pendens Hrk 5] gi|119524970|gb|ABL78342.1| putative signal transduction protein with CBS domains [Thermofilum pendens Hrk 5] Length = 307 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 P S+IAEA S+ + ++ L G+VE G GG Sbjct: 22 GRPVTSSEIAEAVGKSDGTVRNVISALKAMGLVEAKTGPGGGY 64 >gi|124027017|ref|YP_001012337.1| transcriptional regulator [Hyperthermus butylicus DSM 5456] gi|123977711|gb|ABM79992.1| predicted transcriptional regulator [Hyperthermus butylicus DSM 5456] Length = 296 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT + L+ + +IAE E + I+ L G+VE+ G Sbjct: 5 KLTMSQREVLEALIRLYDERRRLIKSKEIAELVNKDEGTVRNIILSLKSLGLVESKTGPT 64 Query: 62 GGVRLCRPADQI 73 GG A +I Sbjct: 65 GGYMPTLKAYEI 76 >gi|29833266|ref|NP_827900.1| GntR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29610388|dbj|BAC74435.1| putative GntR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 258 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 25/131 (19%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV------------RLCR 68 + ++AE IS + L ++L+ L G+VE+ RGR GG L R Sbjct: 59 GERLPSERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRADAGGEDELRR 118 Query: 69 PADQITILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA------FF 119 +++ + DV++ E A A+H + L L + +A Sbjct: 119 RIEKVDMEDVLRFREVLE--VGAAGLCAAHGLTAEQED--RLREALARTQDAPLADYRRL 174 Query: 120 DVLTQYSIECL 130 D L ++ L Sbjct: 175 DTLLHLTLAEL 185 >gi|294496519|ref|YP_003543012.1| signal transduction protein with CBS domains [Methanohalophilus mahii DSM 5219] gi|292667518|gb|ADE37367.1| putative signal transduction protein with CBS domains [Methanohalophilus mahii DSM 5219] Length = 291 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ D + +IA+ + + +Q L G+VE V G +GG R Sbjct: 11 LIALINLQRQKDSAVKGEEIADLIDRNPGTVRNQMQSLKMLGLVEGVPGPKGGYR 65 >gi|315446437|ref|YP_004079316.1| GntR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315264740|gb|ADU01482.1| transcriptional regulator, GntR family [Mycobacterium sp. Spyr1] Length = 260 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R++ ++AE S L ++L L +AG+V+ V GR GG+ + Sbjct: 11 RIVADINAGKPGTKLGSERELAERYRTSRSSLRQVLAALEEAGLVDRVIGRSGGIFISHA 70 Query: 70 ADQITILDVV 79 Q ++ DVV Sbjct: 71 QVQRSLTDVV 80 >gi|282165568|ref|YP_003357953.1| putative transcriptional regulator [Methanocella paludicola SANAE] gi|282157882|dbj|BAI62970.1| putative transcriptional regulator [Methanocella paludicola SANAE] Length = 291 Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ + +I+E + + +Q L G+VE V G +GG + Sbjct: 11 LSALINLFREKGRAVKGEEISERIDRNPGTVRNQMQSLKALGLVEGVPGPKGGYK 65 >gi|73669658|ref|YP_305673.1| hypothetical protein Mbar_A2165 [Methanosarcina barkeri str. Fusaro] gi|72396820|gb|AAZ71093.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 291 Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ D + +IAE + + +Q L G+VE V G +GG + Sbjct: 13 ALINLQRQKDRAIKGEEIAEVIKRNPGTIRNQMQLLKALGLVEGVPGPKGGYK 65 >gi|308160144|gb|EFO62648.1| Hypothetical protein GLP15_4766 [Giardia lamblia P15] Length = 742 Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 24 PNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 + I++I++ + F+ +I + L G+VE+ +G G ++ + ++ +++K Sbjct: 11 LSTINEISQRQDTTMRFVERITKQLGHLKGVVESSQGPFPGSKMTKEELATSLGEILKYI 70 Query: 83 EESF 86 E + Sbjct: 71 EANL 74 >gi|120406516|ref|YP_956345.1| UbiC transcription regulator-associated domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959334|gb|ABM16339.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii PYR-1] Length = 255 Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R++ + ++AE S L ++L L +AG+V+ V GR GG+ + Sbjct: 11 RIVSDINAGVPGTKLGSERELAERYRTSRSSLRQVLAALEEAGLVDRVIGRAGGIFISHA 70 Query: 70 ADQITILDVV 79 Q ++ DVV Sbjct: 71 QVQRSLTDVV 80 >gi|326793724|ref|YP_004311544.1| hypothetical protein Marme_0408 [Marinomonas mediterranea MMB-1] gi|326544488|gb|ADZ89708.1| hypothetical protein Marme_0408 [Marinomonas mediterranea MMB-1] Length = 244 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + ++ + S + E +S+ L + L L KAG +E+ RGR GG+RL Sbjct: 20 LRSEEYWKTSDLREQLGVSQRTLMRELAELKKAGYPIESDRGRGGGIRLN 69 >gi|322691555|ref|YP_004221125.1| hypothetical protein BLLJ_1366 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456411|dbj|BAJ67033.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 89 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Query: 66 LCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKAL----NAFF 119 L P +IT+LD+ +A E + V CP+ + + VL+ A A Sbjct: 4 LPAPPKEITLLDIYQAVESTNLDDVIGIHERGNHTCPVARN--IHDVLKDAYAPVAKAMS 61 Query: 120 DVLTQYSIECLVRNRSS 136 D + + ++ ++ + + Sbjct: 62 DSMREVTLANMLADYRN 78 >gi|225016854|ref|ZP_03706046.1| hypothetical protein CLOSTMETH_00766 [Clostridium methylpentosum DSM 5476] gi|224950343|gb|EEG31552.1| hypothetical protein CLOSTMETH_00766 [Clostridium methylpentosum DSM 5476] Length = 298 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + + ++Y + + ++AE +SE +++ ++ L AGI V +G Sbjct: 1 MQINRLFE-----MIYL-LLDRRRMTAKELAERFEVSERTVYRDVEVLSAAGIPVYATKG 54 Query: 60 RRGGVRL 66 R GG++L Sbjct: 55 RGGGIQL 61 >gi|284165543|ref|YP_003403822.1| hypothetical protein Htur_2269 [Haloterrigena turkmenica DSM 5511] gi|284015198|gb|ADB61149.1| Protein of unknown function DUF293 [Haloterrigena turkmenica DSM 5511] Length = 177 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +R L ++ + IAE + + +Q L +VE V G +GG + Sbjct: 14 LRALTNLHKESEAAIKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|289579991|ref|YP_003478457.1| hypothetical protein Nmag_0304 [Natrialba magadii ATCC 43099] gi|289529544|gb|ADD03895.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099] Length = 177 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +R L ++ + IAE + + +Q L +VE V G +GG + Sbjct: 14 LRALTNLHKESEDAIKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|159109685|ref|XP_001705106.1| Hypothetical protein GL50803_13995 [Giardia lamblia ATCC 50803] gi|157433185|gb|EDO77432.1| hypothetical protein GL50803_13995 [Giardia lamblia ATCC 50803] Length = 738 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 24 PNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 I++I++ + F+ +I + L G+VE+ +G G ++ + ++ +++K Sbjct: 11 LLTINEISQRQDTTMRFVERITKQLGHLKGVVESSQGPFPGSKMTKEELATSLGEILKYI 70 Query: 83 EESF 86 E + Sbjct: 71 EANL 74 >gi|300783743|ref|YP_003764034.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793257|gb|ADJ43632.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 234 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++AE +S + L + ++ L AG VE+ RGR GG Sbjct: 37 GERLPSERELAERLGVSRVTLREAIRALSDAGYVESRRGRYGG 79 >gi|326328978|ref|ZP_08195308.1| putative transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325953237|gb|EGD45247.1| putative transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 317 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 R L+ + P ++ E ++E + + L +AGI VE+ RG GG RL R Sbjct: 10 RALLTLELLQSSPGITAERLGERLRVTERAARRYVAILREAGIPVESERGPYGGYRLGR 68 >gi|56962182|ref|YP_173905.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908417|dbj|BAD62944.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 303 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRG 62 + VL A + I ++AE+ +S + K +Q L KAG+++T VRG+ G Sbjct: 24 LNVLQLLA---ERSMNIKELAESQQVSSAIMTKHVQKLEKAGLIDTTHVRGKAG 74 >gi|331696097|ref|YP_004332336.1| helix-turn-helix type 11 domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326950786|gb|AEA24483.1| helix-turn-helix type 11 domain-containing protein [Pseudonocardia dioxanivorans CB1190] Length = 346 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 RVL A + +++A A + E + + + LV+ + V + RGR GG RL R Sbjct: 7 RVLALLAILQAGGTRTAAELAAAIGVDERTVRRYVAHLVELDVPVRSERGRHGGFRLAR 65 >gi|147920241|ref|YP_685992.1| hypothetical protein RCIX1391 [uncultured methanogenic archaeon RC-I] gi|110621388|emb|CAJ36666.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 292 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ + +I+E + + +Q L G+VE V G +GG + Sbjct: 12 LSALINLFREKGRAIKGEEISERIDRNPGTVRNQMQSLKALGLVEGVPGPKGGYK 66 >gi|313126392|ref|YP_004036662.1| transcriptional regulator, contains c-terminal cbs domains [Halogeometricum borinquense DSM 11551] gi|312292757|gb|ADQ67217.1| predicted transcriptional regulator, contains C-terminal CBS domains [Halogeometricum borinquense DSM 11551] Length = 177 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ + + IAE + + +Q L +VE V G +GG + Sbjct: 14 LTALINLYRQTEDAVKGEDIAEEVNRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|289583371|ref|YP_003481781.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099] gi|289532869|gb|ADD07219.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099] Length = 173 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R ++ + + IA + + +Q L +V+ V G +GG R A Sbjct: 14 LRAVIDLHMEQQTTVKGDDIAAEVGLKAGTIRNKMQSLKALQLVDGVPGPKGGYR--PTA 71 Query: 71 DQITILDVVKATEESFFVAE 90 T L+V + + + Sbjct: 72 AAYTALEVQQIDDPAIVPVR 91 >gi|329935293|ref|ZP_08285259.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329305116|gb|EGG48975.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 372 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRG 62 T T + L+ + ++ +A + E + + L++ G+ VE++RGR G Sbjct: 3 TSTTR--VLALLEI-LQGGGTRTVADLAARLGVDERTVRRYAGHLLELGVPVESLRGRYG 59 Query: 63 GVRLC 67 G RL Sbjct: 60 GYRLA 64 >gi|227828274|ref|YP_002830054.1| signal transduction protein with CBS domains [Sulfolobus islandicus M.14.25] gi|227831032|ref|YP_002832812.1| Protein of unknown function DUF293 [Sulfolobus islandicus L.S.2.15] gi|229579913|ref|YP_002838312.1| signal transduction protein with CBS domains [Sulfolobus islandicus Y.G.57.14] gi|229581426|ref|YP_002839825.1| putative signal-transduction protein with CBS domains [Sulfolobus islandicus Y.N.15.51] gi|229585503|ref|YP_002844005.1| signal transduction protein with CBS domains [Sulfolobus islandicus M.16.27] gi|238620466|ref|YP_002915292.1| putative signal transduction protein with CBS domains [Sulfolobus islandicus M.16.4] gi|284998527|ref|YP_003420295.1| Protein of unknown function DUF293 [Sulfolobus islandicus L.D.8.5] gi|227457480|gb|ACP36167.1| Protein of unknown function DUF293 [Sulfolobus islandicus L.S.2.15] gi|227460070|gb|ACP38756.1| putative signal transduction protein with CBS domains [Sulfolobus islandicus M.14.25] gi|228010628|gb|ACP46390.1| putative signal transduction protein with CBS domains [Sulfolobus islandicus Y.G.57.14] gi|228012142|gb|ACP47903.1| putative signal-transduction protein with CBS domains [Sulfolobus islandicus Y.N.15.51] gi|228020553|gb|ACP55960.1| putative signal transduction protein with CBS domains [Sulfolobus islandicus M.16.27] gi|238381536|gb|ACR42624.1| putative signal transduction protein with CBS domains [Sulfolobus islandicus M.16.4] gi|284446423|gb|ADB87925.1| Protein of unknown function DUF293 [Sulfolobus islandicus L.D.8.5] gi|323475344|gb|ADX85950.1| putative signal transduction protein with CBS domains [Sulfolobus islandicus REY15A] gi|323478069|gb|ADX83307.1| putative signal transduction protein with CBS domains [Sulfolobus islandicus HVE10/4] Length = 300 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L + ++A+ E + I+ L G+VE+ G GG A Sbjct: 12 LLALTDLYNRQKRMIKSKEVADIIGKDEGTVRNIILSLKVLGLVESKPGPNGGYMPTLKA 71 Query: 71 DQI 73 +I Sbjct: 72 YEI 74 >gi|15897070|ref|NP_341675.1| hypothetical protein SSO0110 [Sulfolobus solfataricus P2] gi|284173415|ref|ZP_06387384.1| hypothetical protein Ssol98_01997 [Sulfolobus solfataricus 98/2] gi|1707784|emb|CAA69582.1| orf c04012 [Sulfolobus solfataricus P2] gi|13813241|gb|AAK40465.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261601725|gb|ACX91328.1| putative signal transduction protein with CBS domains [Sulfolobus solfataricus 98/2] Length = 300 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L + ++A+ E + I+ L G+VE+ G GG A Sbjct: 12 LLALTDLYNRQKRMIKSKEVADIIGKDEGTVRNIILSLKVLGLVESKPGPNGGYMPTLKA 71 Query: 71 DQI 73 +I Sbjct: 72 YEI 74 >gi|261403683|ref|YP_003247907.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus vulcanius M7] gi|261370676|gb|ACX73425.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus vulcanius M7] Length = 145 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 13/81 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ T +++ + P +A+ I + ++ L G+VET +GR Sbjct: 1 MKVSGLTK---KIMEHL----KEPTTTKDLAKQLNIHPKNIDAKIRVLRDLGLVETKKGR 53 Query: 61 RGGVRLCRPA------DQITI 75 GG++L + +I++ Sbjct: 54 NGGIKLTKEGLILLEKGEISL 74 >gi|116754457|ref|YP_843575.1| signal transduction protein [Methanosaeta thermophila PT] gi|116665908|gb|ABK14935.1| putative signal transduction protein with CBS domains [Methanosaeta thermophila PT] Length = 288 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L+ + +IAE + + +Q L +VE V G +GG + A Sbjct: 11 LTALINIHRREGRAVKGEEIAELIDRNPGTIRNQMQSLKALNLVEGVPGPKGGYKATGAA 70 Query: 71 DQI----TILDVVKA 81 + DVV Sbjct: 71 YEALCLDNSGDVVDV 85 >gi|53803574|ref|YP_114581.1| ribonuclease BN [Methylococcus capsulatus str. Bath] gi|53757335|gb|AAU91626.1| putative ribonuclease BN [Methylococcus capsulatus str. Bath] Length = 430 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 15/131 (11%) Query: 8 DYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +++ A + +A+ + + L+ L + G++ ++ G R Sbjct: 306 RLALLLMILIGRSHARGEAAACTLPGLADQVNLPWEAVADPLECLKRHGLLLSLNGERKA 365 Query: 64 VRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 L R D I + +VV+A V + +L + Sbjct: 366 YVLARDTDAILLSEVVEAVRTAGDQPVLTLQDEPD---------AVREILAAIDRSPETT 416 Query: 122 LTQYSIECLVR 132 L S+ +VR Sbjct: 417 LGNRSLRDVVR 427 >gi|167747738|ref|ZP_02419865.1| hypothetical protein ANACAC_02459 [Anaerostipes caccae DSM 14662] gi|167653100|gb|EDR97229.1| hypothetical protein ANACAC_02459 [Anaerostipes caccae DSM 14662] Length = 107 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 + L K G++ T G GG ++T+ DV A + F V+ + S D P Sbjct: 1 MGKLKKKGLISTKEGVVGGYLFDLDPSKVTLYDVSSALDVPF-VSSSWRSGGSDLP---- 55 Query: 105 CGLTSVLRKALNAFFDVLTQ 124 C + S + ++ + L Q Sbjct: 56 CLVASGMAGIMDDIYGTLDQ 75 >gi|282864299|ref|ZP_06273355.1| GntR domain protein [Streptomyces sp. ACTE] gi|282560786|gb|EFB66332.1| GntR domain protein [Streptomyces sp. ACTE] Length = 245 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 12/72 (16%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRL--CRPA------- 70 + ++AE IS + L ++L+ L G+VE RGR GG L RPA Sbjct: 46 GERLPPERELAEHLGISRVTLREVLKVLQDQGLVEARRGRYGGTFVLPRSRPADGDELRR 105 Query: 71 --DQITILDVVK 80 +++ + DV++ Sbjct: 106 RVEEVDLTDVLR 117 >gi|327401863|ref|YP_004342702.1| putative signal transduction protein [Archaeoglobus veneficus SNP6] gi|327317371|gb|AEA47987.1| putative signal transduction protein with CBS domains [Archaeoglobus veneficus SNP6] Length = 295 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 17/95 (17%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--- 65 Y + L + +IAE + + +Q L G+VE V G +GG R Sbjct: 13 YALITLY--KKKGGASIKGEEIAELINRNPGTVRNQMQALRALGLVEGVPGPKGGYRPTA 70 Query: 66 -----LCR-PADQ-----ITI-LDVVKATEESFFV 88 L ++ IT+ +V+ A+ E + Sbjct: 71 KAYELLAITKPEEAVRVPITVNGEVIDASAEEIDL 105 >gi|294632783|ref|ZP_06711342.1| GntR-family transcriptional regulator [Streptomyces sp. e14] gi|292830564|gb|EFF88914.1| GntR-family transcriptional regulator [Streptomyces sp. e14] Length = 247 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 + + +A+ +S + L ++L+ L GIVE+ RGR GG L RP Sbjct: 41 LVPYGERLPAERDLADRLGVSRVTLREVLKALQDQGIVESRRGRYGGTFVLRRP 94 >gi|300711575|ref|YP_003737389.1| hypothetical protein HacjB3_11070 [Halalkalicoccus jeotgali B3] gi|299125258|gb|ADJ15597.1| hypothetical protein HacjB3_11070 [Halalkalicoccus jeotgali B3] Length = 177 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ + + IAE + + +Q L +VE V G +GG + Sbjct: 14 LTALINLHREAEDAVKGEDIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|312198298|ref|YP_004018359.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229634|gb|ADP82489.1| transcriptional regulator [Frankia sp. EuI1c] Length = 345 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL ++ + + ++ +A + E + + + L + V +VRGR GG RL Sbjct: 7 RVLALLESLQSGGTHTVAALAARLEVDERTVRRYVDQLRDLDVPVRSVRGRHGGYRLA 64 >gi|163840289|ref|YP_001624694.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162953765|gb|ABY23280.1| transcriptional regulator, HTH domain [Renibacterium salmoninarum ATCC 33209] Length = 320 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R L I P ++ +++ + + L +AGI VE++RG GG RL Sbjct: 10 RALQALEILRSRPGTTAEELGTRLGVTDRAARRYVAILREAGIPVESIRGAHGGYRLG 67 >gi|115380143|ref|ZP_01467176.1| ribonuclease BN, putative [Stigmatella aurantiaca DW4/3-1] gi|310823548|ref|YP_003955906.1| ribonuclease bn [Stigmatella aurantiaca DW4/3-1] gi|115362848|gb|EAU62050.1| ribonuclease BN, putative [Stigmatella aurantiaca DW4/3-1] gi|309396620|gb|ADO74079.1| Ribonuclease BN [Stigmatella aurantiaca DW4/3-1] Length = 456 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Query: 10 GIRVLMY--CAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 RV + A + P + +A + E F+ ++ + KA ++E+ R +GGVR Sbjct: 316 AARVAVDATLAWMDGLPPPLPRHLAAHLRVPESFVHDAIERMEKAHLLESSR--KGGVRP 373 Query: 67 CRPADQITILDVVKATEE 84 R ++T DV A Sbjct: 374 ARDPSELTFADVAFAIHG 391 >gi|72161850|ref|YP_289507.1| transcriptional regulator [Thermobifida fusca YX] gi|71915582|gb|AAZ55484.1| putative transcriptional regulator [Thermobifida fusca YX] Length = 332 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L ++ ++AE +SE L + + L + G VE RG GG +L Sbjct: 13 RMLRLLSLLQTQRYWSGRELAEQLGVSERTLRRDVDRLRELGYPVEATRGVAGGYQL 69 >gi|92115292|ref|YP_575220.1| GntR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798382|gb|ABE60521.1| transcriptional regulator, GntR family [Chromohalobacter salexigens DSM 3043] Length = 251 Score = 45.3 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 16/111 (14%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG--------GVRLCRPA 70 + + + E IS + + + L AG+V + RG +RL P Sbjct: 33 RPGERLPTEAALGERYGISRSVVREAISMLRNAGLVTSRRGSGSFVAEVPTVALRLAIP- 91 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 ++ +++ E + L S LR+ NA D+ Sbjct: 92 -DPSLQSIIRLLELRRAL------EVEAARLAAQRRTPSQLRRIRNAMADI 135 >gi|15604349|ref|NP_220865.1| hypothetical protein RP488 [Rickettsia prowazekii str. Madrid E] gi|3861041|emb|CAA14941.1| unknown [Rickettsia prowazekii] gi|292572103|gb|ADE30018.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia prowazekii Rp22] Length = 64 Score = 45.3 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M L + Y + ++ A + ++ P + +++ IS +L +I L K+ +V+++ Sbjct: 1 MILKIKEIYTVMAILELATNISNGPIILDKVSIKHNISLNYLAQIFSKLKKSDLVKSI 58 >gi|21222871|ref|NP_628650.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|7981391|emb|CAB92106.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 341 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++++AE ++E + + + LV + VE+VRGR GG RL Sbjct: 7 RVLTLLELLQAGGVRSVAELAERLGVAERTVRRYVDHLVDLDVPVESVRGRYGGYRLA 64 >gi|302550263|ref|ZP_07302605.1| GntR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302467881|gb|EFL30974.1| GntR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 244 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 23/123 (18%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV------------RLCRPADQITI 75 ++AE IS + L ++L+ L G+VE+ RGR GG L R ++ I Sbjct: 52 RELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRADAGGEDELRRRIAEVDI 111 Query: 76 LDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA------FFDVLTQYSI 127 DV++ E E C A + + L L + +A D L +I Sbjct: 112 EDVLRFREVLEVGAAGLCAAHGLDE---GQADRLREALARTHDAPLAEYRRLDTLLHLTI 168 Query: 128 ECL 130 L Sbjct: 169 AEL 171 >gi|73668133|ref|YP_304148.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro] gi|72395295|gb|AAZ69568.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro] Length = 221 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 9/125 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH+ + +Y + ++Y N P + QI+E +S + ++++ L +G+VE Sbjct: 1 MHIDRFEEY-LETILYLIRKNQGPAKTKQISEELNVSPPSVTEMIKKLHSSGLVEYT--P 57 Query: 61 RGGVRLCRPADQ--ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA-LNA 117 GV L + I I + E F+ + + + +C L + A L Sbjct: 58 YQGVELTKQGTDQAIKIKRKHQVLE--TFLVDVLDFDRKEAHKE-ACELEHAVSDAVLEK 114 Query: 118 FFDVL 122 ++ L Sbjct: 115 IYEFL 119 >gi|289769915|ref|ZP_06529293.1| transcriptional regulator [Streptomyces lividans TK24] gi|289700114|gb|EFD67543.1| transcriptional regulator [Streptomyces lividans TK24] Length = 341 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++++AE ++E + + + LV + VE+VRGR GG RL Sbjct: 7 RVLTLLELLQAGGVRSVAELAERLGVAERTVRRYVDHLVDLDVPVESVRGRYGGYRLA 64 >gi|325959703|ref|YP_004291169.1| putative signal transduction protein with CBS domains [Methanobacterium sp. AL-21] gi|325331135|gb|ADZ10197.1| putative signal transduction protein with CBS domains [Methanobacterium sp. AL-21] Length = 293 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 ++ L+ + D + +IAE + + +Q L G+V+ V G RGG + Sbjct: 10 LQSLINLYRNADASIKGEEIAEIMNRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 64 >gi|11497731|ref|NP_068952.1| hypothetical protein AF0111 [Archaeoglobus fulgidus DSM 4304] gi|2650538|gb|AAB91120.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 299 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 Y + L + + +IAE + + +Q L G+VE V G +GG R Sbjct: 15 YALITLY--KKKSGGSVKGEEIAELINRNPGTVRNQMQALRALGLVEGVPGPKGGYR 69 >gi|110668555|ref|YP_658366.1| transcriptional regulator [Haloquadratum walsbyi DSM 16790] gi|109626302|emb|CAJ52760.1| probable transcriptional regulator [Haloquadratum walsbyi DSM 16790] Length = 177 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ ++ + IA+ + + +Q L +VE V G +GG + Sbjct: 14 LTALINLHREDEEAVKGETIADEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|159041685|ref|YP_001540937.1| signal transduction protein [Caldivirga maquilingensis IC-167] gi|157920520|gb|ABW01947.1| putative signal transduction protein with CBS domains [Caldivirga maquilingensis IC-167] Length = 295 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + L+ + P + +IA+ ++E + I+ L +V++ G GG Sbjct: 11 VEALLELYNMHKRPIKSKEIADKLGMNEGTIRNIMVALKAMNLVDSKTGPYGGF 64 >gi|21231763|ref|NP_637680.1| repressor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768111|ref|YP_242873.1| repressor [Xanthomonas campestris pv. campestris str. 8004] gi|21113470|gb|AAM41604.1| repressor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573443|gb|AAY48853.1| repressor [Xanthomonas campestris pv. campestris str. 8004] Length = 339 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R+L A+ N + +AE I + + ++ L + G + V G GG RL Sbjct: 5 AARLLRLIALMQNGRDWPGAALAERLGIHPRSVRRDMERLRELGYPIRAVSGTGGGYRLG 64 Query: 68 RPADQITILDVVKATEESFFVA 89 A + +L EE + Sbjct: 65 HGAAALPLL-----FEEDEALT 81 >gi|84498273|ref|ZP_00997070.1| putative transcriptional regulator [Janibacter sp. HTCC2649] gi|84381773|gb|EAP97656.1| putative transcriptional regulator [Janibacter sp. HTCC2649] Length = 248 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 IR L A + + ++AE ++ L + L ++G+V T RGR GG Sbjct: 35 AIR-LGVLA-NGEQLPPERELAERLGVARNTLRDAIAALRESGLVTTKRGRGGG 86 >gi|298675660|ref|YP_003727410.1| putative signal transduction protein [Methanohalobium evestigatum Z-7303] gi|298288648|gb|ADI74614.1| putative signal transduction protein with CBS domains [Methanohalobium evestigatum Z-7303] Length = 291 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ ++ + IAE + + +Q L G+VE V G +GG + Sbjct: 13 ALINLQRQKNHAIKGEDIAEVIQRNPGTVRNQMQSLKVLGLVEGVPGPKGGYK 65 >gi|322370374|ref|ZP_08044933.1| hypothetical protein ZOD2009_12827 [Haladaptatus paucihalophilus DX253] gi|320550082|gb|EFW91737.1| hypothetical protein ZOD2009_12827 [Haladaptatus paucihalophilus DX253] Length = 177 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ + + IAE + + +Q L +VE V G +GG + Sbjct: 14 LTALVNLHRETEDAVKGEDIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|317405514|gb|EFV85822.1| GntR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 242 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 15/116 (12%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------RRGGVRLCRPAD 71 D S+I +S + + L L +G+VET G GG Sbjct: 36 RPGDKLPTESEIMRQFGVSRTVVREALSRLQASGLVETHHGVGTYALEPSGGGDFRVDPA 95 Query: 72 QI-TILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVLTQ 124 I T+ DV+ E C S L +R+AL+AF L Sbjct: 96 DIATVRDVLVLLELRI----CLESEAAGLAAVRRSEAQLAE-MRRALDAFKAALDS 146 >gi|70607246|ref|YP_256116.1| CBS domain-containing protein [Sulfolobus acidocaldarius DSM 639] gi|68567894|gb|AAY80823.1| CBS domain protein [Sulfolobus acidocaldarius DSM 639] Length = 300 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + L+ N + +IA+ E + ++ L G++E+ G GG Sbjct: 12 LLALIDIYNKNKRMVKSKEIADMIGKDEGTVRNVILSLKVLGLIESKPGPSGGY 65 >gi|120556399|ref|YP_960750.1| regulatory proteins, IclR [Marinobacter aquaeolei VT8] gi|120326248|gb|ABM20563.1| regulatory protein, IclR [Marinobacter aquaeolei VT8] Length = 258 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ H D +++IA A + + +I+ L G VE VR GG RL Sbjct: 26 IMRELGEHPDG-LSLAEIARAVALPRSTIQRIIGALEAEGFVEMVR-AEGGYRLG 78 >gi|308176260|ref|YP_003915666.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743723|emb|CBT74695.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 318 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ T + +R+L H ++A+ +S + + + L G V+ RG Sbjct: 1 MSTSTRF-LRLLSLLQTH--RYWSGDELAQRLDVSLRTVRRDIDRLRDLGYPVQADRGVG 57 Query: 62 GGVRLC 67 GG +L Sbjct: 58 GGYQLA 63 >gi|18313486|ref|NP_560153.1| hypothetical protein PAE2640 [Pyrobaculum aerophilum str. IM2] gi|18161024|gb|AAL64335.1| conserved within P. aerophilum [Pyrobaculum aerophilum str. IM2] Length = 189 Score = 44.6 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRRGGVR 65 IR L+ A + ++ E ISE L ++Q L +AG+VE RGR R Sbjct: 16 AIRHLVDGATY----VTFKELVERLGISERRLRALMQELRQAGLVEAYINPSRGRALLYR 71 Query: 66 LC 67 L Sbjct: 72 LA 73 >gi|330507926|ref|YP_004384354.1| hypothetical protein MCON_1966 [Methanosaeta concilii GP-6] gi|328928734|gb|AEB68536.1| CBS domain pair protein/Domain of unknown function PF03444 [Methanosaeta concilii GP-6] Length = 295 Score = 44.6 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L+ + +IAE + + +Q L +VE V G +GG R A Sbjct: 18 LTALINIYRVEGRAVKGEEIAELIDRNPGTIRNQMQSLKALNLVEGVPGPKGGYRATGSA 77 Query: 71 -DQITI---LDVVKA 81 + + + DVV Sbjct: 78 YEALNVEATGDVVTV 92 >gi|328881254|emb|CCA54493.1| GntR family transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 44.6 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++A+ IS + L ++L+ L + G+VE+ RGR GG Sbjct: 43 GERLPAERELADRMGISRVTLREVLKVLQEQGLVESRRGRYGG 85 >gi|184155927|ref|YP_001844267.1| hypothetical protein LAF_1451 [Lactobacillus fermentum IFO 3956] gi|260662818|ref|ZP_05863712.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|183227271|dbj|BAG27787.1| hypothetical protein [Lactobacillus fermentum IFO 3956] gi|260552899|gb|EEX25898.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 108 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 41 LFKILQPLVKAGIVETVRGRRGGV-RLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 + K++ L A I+ + R R DQIT+LDV +AT C Sbjct: 1 MRKMIAQLRAADILAARQNNR--YDNFARDLDQITVLDVYRATAPKNPFLVPDQETSGQC 58 Query: 100 PLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133 + + +T + L Q +++ LV Sbjct: 59 SVGVAFPEVITKHFAEVQVGIEQRLDQITVQQLVDE 94 >gi|325696001|gb|EGD37892.1| HTH domain protein [Streptococcus sanguinis SK160] Length = 308 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI V + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPVYSERGDKGGFY 60 >gi|256786020|ref|ZP_05524451.1| transcriptional regulator [Streptomyces lividans TK24] Length = 334 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 L+ + ++++AE ++E + + + LV + VE+VRGR GG RL Sbjct: 4 LLEL-LQAGGVRSVAELAERLGVAERTVRRYVDHLVDLDVPVESVRGRYGGYRLA 57 >gi|91773827|ref|YP_566519.1| hypothetical protein Mbur_1886 [Methanococcoides burtonii DSM 6242] gi|91712842|gb|ABE52769.1| Cystathionine-beta-synthase and DUF293 domains-containing protein [Methanococcoides burtonii DSM 6242] Length = 291 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ + +IAE + + +Q L G+VE V G +GG R A + Sbjct: 14 LINLQRQKASAVKGEEIAELIDRNPGTVRNQMQSLKMLGLVEGVPGPKGGYRATGDAYE 72 >gi|271967479|ref|YP_003341675.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510654|gb|ACZ88932.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 318 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL--- 66 +R+L H ++P ++A +S L + + L + G V G GG RL Sbjct: 9 LRLLSLLQAHREWPGP--ELAGRLEVSPRTLRRDIDRLRELGYPVHATTGPAGGYRLEAG 66 Query: 67 -CRPA 70 P Sbjct: 67 TAMPP 71 >gi|118469804|ref|YP_887727.1| IclR family protein regulator [Mycobacterium smegmatis str. MC2 155] gi|118171091|gb|ABK71987.1| probable IclR family protein regulator [Mycobacterium smegmatis str. MC2 155] Length = 260 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 IR+L A P +++IA +++ + + L + G+V R GG L R Sbjct: 18 SIRILDLLAEARGVPRTLTEIARELGLAKSSVSNLCAALEEGGLV---RRSTGGYLLGR 73 >gi|188991241|ref|YP_001903251.1| putative DNA-binding protein [Xanthomonas campestris pv. campestris str. B100] gi|167733001|emb|CAP51199.1| putative DNA-binding protein [Xanthomonas campestris pv. campestris] Length = 339 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R+L A+ N + +AE I + + ++ L + G + V G GG RL Sbjct: 5 AARLLRLIALMQNGRDWPGAALAERLGIHPRSVRRDIERLRELGYPIRAVSGTGGGYRLG 64 Query: 68 RPADQITILDVVKATEESFFVA 89 A + +L EE + Sbjct: 65 HGAAALPLL-----FEEDEALT 81 >gi|296164612|ref|ZP_06847179.1| crp family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900031|gb|EFG79470.1| crp family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 270 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL--- 66 +L H ++ ++I + ++ + +IL L G+V + RGR GG RL Sbjct: 14 AAEILRLLQAHPGGLSQ-AEIGDRLGLARSTVSRILGALDDEGLVASPRGR-GGYRLGPE 71 Query: 67 -CRPADQITILDVVKA 81 R A + + V+ Sbjct: 72 IARMASTVRLGVVMDV 87 >gi|302866392|ref|YP_003835029.1| hypothetical protein Micau_1905 [Micromonospora aurantiaca ATCC 27029] gi|302569251|gb|ADL45453.1| helix-turn-helix, type 11 [Micromonospora aurantiaca ATCC 27029] Length = 318 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L+ + ++ +A + E + + L GI VE RGR GG RL Sbjct: 8 VLALLEI-LQAGGGFTVADLAGRLGVDERTVRRYAAHLADLGIPVEARRGRYGGYRLA 64 >gi|315502806|ref|YP_004081693.1| helix-turn-helix, type 11 [Micromonospora sp. L5] gi|315409425|gb|ADU07542.1| helix-turn-helix, type 11 [Micromonospora sp. L5] Length = 318 Score = 44.2 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L+ + ++ +A + E + + L GI VE RGR GG RL Sbjct: 8 VLALLEI-LQAGGGFTVADLAGRLGVDERTVRRYAAHLADLGIPVEARRGRYGGYRLA 64 >gi|238061724|ref|ZP_04606433.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] gi|237883535|gb|EEP72363.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] Length = 323 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 RVL + + S++A+ + + L + GI VE RGR GG RL R Sbjct: 7 RVLTLLELLQSHTRLPGSELADRLGTDVRTVRRYAAHLRELGIPVEAERGRHGGYRLAR 65 >gi|85709156|ref|ZP_01040222.1| putative transcriptional regulator, ArsR family protein [Erythrobacter sp. NAP1] gi|85690690|gb|EAQ30693.1| putative transcriptional regulator, ArsR family protein [Erythrobacter sp. NAP1] Length = 105 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 A ++ QIAE IS+ + + L L AG+VE+ RG+ RL R Sbjct: 17 LAYLSESELTAGQIAERFDISKPAVSQHLTVLQNAGLVESEKRGQYVHYRLVRE 70 >gi|289772673|ref|ZP_06532051.1| transcriptional regulator [Streptomyces lividans TK24] gi|289702872|gb|EFD70301.1| transcriptional regulator [Streptomyces lividans TK24] Length = 247 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 + ++AE IS + L ++L+ L G+V+ RGR GG L R Sbjct: 44 LVAAGERLPAERELAERLGISRVTLREVLRVLQDQGLVQARRGRYGGTFVLPRA 97 >gi|85707149|ref|ZP_01038236.1| rrf2 family protein [Roseovarius sp. 217] gi|85668308|gb|EAQ23182.1| rrf2 family protein [Roseovarius sp. 217] Length = 50 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%) Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143 + +C L L A+ AF+ L + +++ LV + ++ IF+A Sbjct: 1 MTEACRLRVALVDAVEAFYAHLDEVTLDALVCDNQALFTIFSA 43 >gi|54027109|ref|YP_121351.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54018617|dbj|BAD59987.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 333 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + A+ P +A+ +S + + L L AG + RGR GGV L Sbjct: 9 LLLALRPGRPLTTEHLADQLGVSVRTVLRDLNWLRDAGFPLVVQRGRHGGVTL 61 >gi|21220111|ref|NP_625890.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|256788778|ref|ZP_05527209.1| transcriptional regulator [Streptomyces lividans TK24] gi|3581869|emb|CAA20825.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 236 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 + ++AE IS + L ++L+ L G+V+ RGR GG L R Sbjct: 33 LVAAGERLPAERELAERLGISRVTLREVLRVLQDQGLVQARRGRYGGTFVLPRA 86 >gi|329939063|ref|ZP_08288437.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329301948|gb|EGG45841.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 273 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +RVL + + ++A +S + L ++L+ L + G+V + RGR GG Sbjct: 57 LRVLRLGLVPAGERLPAERELAGRLGVSRVTLREVLRVLHEEGLVASRRGRYGG 110 >gi|312132401|ref|YP_003999740.1| transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] gi|311772721|gb|ADQ02209.1| Putative transcriptional regulator [Bifidobacterium longum subsp. longum BBMN68] Length = 86 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 69 PADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKAL----NAFFDVL 122 P +IT+LD+ +A E + V CP+ + + VL+ A A D + Sbjct: 4 PPKEITLLDIHQAVESTNLDDVIGIHERGNHTCPVARN--IHDVLKDAYAPVAKAMSDSM 61 Query: 123 TQYSIECLVRNRSS 136 + ++ ++ + + Sbjct: 62 REVTLANMLADYRN 75 >gi|294633321|ref|ZP_06711880.1| PE-PGRS family protein [Streptomyces sp. e14] gi|292831102|gb|EFF89452.1| PE-PGRS family protein [Streptomyces sp. e14] Length = 509 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 M + + + +A +SE + + +Q L +AG+ V + RGR GG RL Sbjct: 1 MALLLQSSPGLTAAALAHELDVSERTVIRDVQALQEAGVPVRSERGRAGGYRLA 54 >gi|302518083|ref|ZP_07270425.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302426978|gb|EFK98793.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 244 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPAD 71 + ++A +S L +++ L G+V++ RGR GG R Sbjct: 41 LVAPGERLPPERELAARLGVSRATLREVVSVLHTEGLVDSRRGRYGGTFVRAGARAPR 98 >gi|21243192|ref|NP_642774.1| repressor [Xanthomonas axonopodis pv. citri str. 306] gi|21108718|gb|AAM37310.1| repressor [Xanthomonas axonopodis pv. citri str. 306] Length = 321 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78 +AE I L + ++ L +AG V G GG RL + A + +L Sbjct: 16 QGGRSWSGVALAERLGIHPRSLRRDIERLREAGYPVHATPGSGGGYRLGQGAAALPLL-- 73 Query: 79 VKATEESFFVA 89 EE+ + Sbjct: 74 ---LEENEALT 81 >gi|307316927|ref|ZP_07596369.1| regulatory protein GntR HTH [Sinorhizobium meliloti AK83] gi|306897549|gb|EFN28293.1| regulatory protein GntR HTH [Sinorhizobium meliloti AK83] Length = 243 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TILDV 78 ++AE +S + + L L G+VE RG G L RP+ + + D+ Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRPSQDLPNLADL 96 >gi|296269707|ref|YP_003652339.1| regulatory protein GntR HTH [Thermobispora bispora DSM 43833] gi|296092494|gb|ADG88446.1| regulatory protein GntR HTH [Thermobispora bispora DSM 43833] Length = 249 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +L+ + + ++ A+ +S + L + L L + G+VET+RGR GG + RP Sbjct: 26 ILLGLLVDGEQLPTEAEFADQLGVSPMTLREALAILRQQGLVETLRGRNGGSFVRRP 82 >gi|16263854|ref|NP_436646.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|15139978|emb|CAC48506.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] Length = 243 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TILDV 78 ++AE +S + + L L G+VE RG G L RP+ + + D+ Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRPSQDLPNLADL 96 >gi|333028238|ref|ZP_08456302.1| putative GntR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332748090|gb|EGJ78531.1| putative GntR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 244 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPAD 71 + ++A +S L +++ L G+V++ RGR GG R Sbjct: 41 LVAPGERLPPERELAARLGVSRATLREVVSVLHTEGLVDSRRGRYGGTFVRAGARAPR 98 >gi|307308149|ref|ZP_07587864.1| regulatory protein GntR HTH [Sinorhizobium meliloti BL225C] gi|306901352|gb|EFN31957.1| regulatory protein GntR HTH [Sinorhizobium meliloti BL225C] Length = 243 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TILDV 78 ++AE +S + + L L G+VE RG G L RP+ + + D+ Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRPSQDLPNLADL 96 >gi|152964313|ref|YP_001360097.1| hypothetical protein Krad_0343 [Kineococcus radiotolerans SRS30216] gi|151358830|gb|ABS01833.1| Helix-turn-helix type 11 domain protein [Kineococcus radiotolerans SRS30216] Length = 339 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +++A+ +S L + + L G V RG GG RL A Sbjct: 24 AELADRLGVSPRTLRRDVDRLRALGYPVHAARGVAGGYRLAPGAS 68 >gi|239929902|ref|ZP_04686855.1| regulatory protein GntR, HTH [Streptomyces ghanaensis ATCC 14672] Length = 248 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +L+ + + + A +S + L + L L + G+VET RGR GG + RP Sbjct: 34 ILLGLVVDGEQLPTEVEFAGQLGVSPMTLREALAILRQQGLVETRRGRNGGTFVRRP 90 >gi|29827442|ref|NP_822076.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29604541|dbj|BAC68611.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 350 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L+ + + +A + E + + + L+ G+ V++VRGR GG RL Sbjct: 8 VLALLEI-LQEGGIRTVPDLAARLNVDERTVRRYVGHLLDLGVPVDSVRGRYGGYRLA 64 >gi|292655727|ref|YP_003535624.1| hypothetical protein HVO_1577 [Haloferax volcanii DS2] gi|291372275|gb|ADE04502.1| conserved hypothetical protein [Haloferax volcanii DS2] Length = 177 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ ++ + IA + + +Q L +VE V G +GG + Sbjct: 14 LTALINLYRDSEDAVKGEDIAAEVNRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|311108762|ref|YP_003981615.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763451|gb|ADP18900.1| bacterial regulatory protein, GntR family protein 61 [Achromobacter xylosoxidans A8] Length = 242 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 15/116 (12%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------RRGGVRLCRPAD 71 D S+I +S + + L L +G+VET G GG Sbjct: 36 RPGDKLPTESEIMRQFGVSRTVVREALSRLQASGLVETHHGVGTYALEPSGGGDFRVDPA 95 Query: 72 QI-TILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVLTQ 124 I T+ DV+ E C S L +R+AL+AF L Sbjct: 96 DIATVRDVLVLLELRI----CLESEAAGLAAARRSPAQLLE-MRRALDAFKSALDG 146 >gi|302547556|ref|ZP_07299898.1| helix-turn-helix, type 11 [Streptomyces hygroscopicus ATCC 53653] gi|302465174|gb|EFL28267.1| helix-turn-helix, type 11 [Streptomyces himastatinicus ATCC 53653] Length = 300 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + + ++++A+ + E + + LV + VE+VRGR GG RL Sbjct: 58 RVLTLLELLQSGGLRTVAELADRLGVDERTVRRYADHLVDLDVPVESVRGRYGGYRLA 115 >gi|291438237|ref|ZP_06577627.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291341132|gb|EFE68088.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 240 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +L+ + + + A +S + L + L L + G+VET RGR GG + RP Sbjct: 26 ILLGLVVDGEQLPTEVEFAGQLGVSPMTLREALAILRQQGLVETRRGRNGGTFVRRP 82 >gi|302529398|ref|ZP_07281740.1| transcriptional regulator [Streptomyces sp. AA4] gi|302438293|gb|EFL10109.1| transcriptional regulator [Streptomyces sp. AA4] Length = 332 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L+ + + ++++AE + E + + ++ L+ I V +VRGR GG RL Sbjct: 8 VLALLEI-LQSGGTRTVAELAERLDVDERTVRRYVEHLLDLDIPVRSVRGRYGGYRLA 64 >gi|332366994|gb|EGJ44734.1| HTH domain protein [Streptococcus sanguinis SK1059] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|332362580|gb|EGJ40380.1| HTH domain protein [Streptococcus sanguinis SK1056] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|332362072|gb|EGJ39874.1| HTH domain protein [Streptococcus sanguinis SK49] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|327474849|gb|EGF20254.1| HTH domain protein [Streptococcus sanguinis SK408] gi|328946456|gb|EGG40596.1| HTH domain protein [Streptococcus sanguinis SK1087] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|327461193|gb|EGF07526.1| HTH domain protein [Streptococcus sanguinis SK1057] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|325694692|gb|EGD36598.1| HTH domain protein [Streptococcus sanguinis SK150] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|325690501|gb|EGD32504.1| HTH domain protein [Streptococcus sanguinis SK115] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|325687697|gb|EGD29718.1| HTH domain protein [Streptococcus sanguinis SK72] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|324993984|gb|EGC25903.1| HTH domain protein [Streptococcus sanguinis SK405] gi|324994697|gb|EGC26610.1| HTH domain protein [Streptococcus sanguinis SK678] gi|327463242|gb|EGF09563.1| HTH domain protein [Streptococcus sanguinis SK1] gi|327489974|gb|EGF21763.1| HTH domain protein [Streptococcus sanguinis SK1058] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|324991621|gb|EGC23554.1| HTH domain protein [Streptococcus sanguinis SK353] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|323351337|ref|ZP_08086993.1| HTH domain protein [Streptococcus sanguinis VMC66] gi|322122561|gb|EFX94272.1| HTH domain protein [Streptococcus sanguinis VMC66] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|220935818|ref|YP_002514717.1| ribonuclease BN [Thioalkalivibrio sp. HL-EbGR7] gi|219997128|gb|ACL73730.1| ribonuclease BN [Thioalkalivibrio sp. HL-EbGR7] Length = 439 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 29/146 (19%) Query: 2 HLTK--RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L+ + +RV+ P + +A + + ++ L KAG++ T Sbjct: 308 QLSSALKERLALRVMKSIGTRFHEGRGPTPLDDLAHELDMPVEAVERVTDALRKAGLLVT 367 Query: 57 --------VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108 V G R QIT+ + A A + P + Sbjct: 368 AGQDPVSFVPG--------RDTGQITLKACLDAVRG--------ADSTVPGPRGEDESVD 411 Query: 109 SVLRKALNAFFDVLTQYSIECLVRNR 134 +++ A + L ++ LV + Sbjct: 412 TLMEALDRALGERLEGVTLAALVERQ 437 >gi|184199738|ref|YP_001853945.1| GntR family transcriptional regulator [Kocuria rhizophila DC2201] gi|183579968|dbj|BAG28439.1| putative GntR family transcriptional regulator [Kocuria rhizophila DC2201] Length = 235 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD 71 + ++A +S L L L +AG ++ RGR GG L PA Sbjct: 37 RGEKLPPERELAAHLGVSRATLRDALAELQRAGFIDVRRGRYGGTYILGSPAA 89 >gi|125718247|ref|YP_001035380.1| hypothetical protein SSA_1436 [Streptococcus sanguinis SK36] gi|125498164|gb|ABN44830.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|171687947|ref|XP_001908914.1| hypothetical protein [Podospora anserina S mat+] gi|170943935|emb|CAP69587.1| unnamed protein product [Podospora anserina S mat+] Length = 371 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+ N + ++A +S + ++ LV G+V + G G L Sbjct: 40 AVHALIELG--NGRSLSVDELAAELRVSTGQVRGVVPELVGRGLVRS-EGDGGSYGLTEE 96 Query: 70 ADQITILDV 78 + T+ + Sbjct: 97 GKE-TLGRI 104 >gi|111223307|ref|YP_714101.1| DeoR family transcriptional regulator [Frankia alni ACN14a] gi|111150839|emb|CAJ62543.1| putative DeoR-family transcriptional regulator [Frankia alni ACN14a] Length = 322 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +R+L H +P ++AE +S L + + L + G V+ RG GG +L Sbjct: 9 LRLLSLLQTHRYWPG--GELAERLGVSPRTLRRDVDRLRELGYPVQATRGVAGGYQL 63 >gi|254471193|ref|ZP_05084595.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062] gi|211959339|gb|EEA94537.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062] Length = 232 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 L+ + + + +A +SE + + LQ + + G+ ++ RGR GGVRL R Sbjct: 3 LLAVQLKQEELCTVKDLALQHGVSERTITRDLQLMREQGLPIDADRGRGGGVRLDRN 59 >gi|15790026|ref|NP_279850.1| inosine-5'-monophosphate dehydrogenase [Halobacterium sp. NRC-1] gi|169235749|ref|YP_001688949.1| hypothetical protein OE2306F [Halobacterium salinarum R1] gi|10580454|gb|AAG19330.1| inosine-5'-monophosphate dehydrogenase [Halobacterium sp. NRC-1] gi|167726815|emb|CAP13601.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 177 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +R L+ + + IA+ + + +Q L +VE V G +GG + Sbjct: 14 LRALVDRYTQQETAVKGEAIADEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|327470769|gb|EGF16225.1| HTH domain protein [Streptococcus sanguinis SK330] Length = 308 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGF 59 >gi|218508987|ref|ZP_03506865.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 131 Score = 43.8 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%) Query: 83 EESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132 + C + DC +C + + +A +L ++E V Sbjct: 1 DGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDAIAAILDNMTLEQFVA 54 >gi|310640200|ref|YP_003944958.1| deor-family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309245150|gb|ADO54717.1| DeoR-family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 303 Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L+++ + ++Y +H ++AE +S +++ + L AGI + + RG Sbjct: 1 MPLSRQFE-----IVYMLLHK-KKVTADELAEHFEVSTRTIYRDIDALSAAGIPIYSSRG 54 Query: 60 RRGGVRL 66 + GG+ L Sbjct: 55 KGGGISL 61 >gi|149177233|ref|ZP_01855839.1| hypothetical protein PM8797T_17252 [Planctomyces maris DSM 8797] gi|148843947|gb|EDL58304.1| hypothetical protein PM8797T_17252 [Planctomyces maris DSM 8797] Length = 131 Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 L+ T +R+++Y A + + E S+ + L L AG++E R G+ Sbjct: 35 LSDETR--LRIMLYLAQEEELFVTA--LCERLNQSQPAVSHHLALLRDAGLIEARRDGKH 90 Query: 62 GGVRLCRP 69 +CR Sbjct: 91 NFYSICRE 98 >gi|119716814|ref|YP_923779.1| GntR family transcriptional regulator [Nocardioides sp. JS614] gi|119537475|gb|ABL82092.1| transcriptional regulator, GntR family [Nocardioides sp. JS614] Length = 248 Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 21/36 (58%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +AE +S L + + L +AG+VET RGR GG Sbjct: 53 RDLAEQLAVSRATLREAMAALREAGLVETKRGRGGG 88 >gi|300787897|ref|YP_003768188.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797411|gb|ADJ47786.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] Length = 318 Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + ++ L G VE RG GG RL P Sbjct: 24 SELAERLGVSPRTIRRDVERLRDLGYPVEASRGVAGGYRLVAGTAMPP 71 >gi|296450500|ref|ZP_06892256.1| DeoR family transcriptional regulator [Clostridium difficile NAP08] gi|296879376|ref|ZP_06903370.1| DeoR family transcriptional regulator [Clostridium difficile NAP07] gi|296260761|gb|EFH07600.1| DeoR family transcriptional regulator [Clostridium difficile NAP08] gi|296429522|gb|EFH15375.1| DeoR family transcriptional regulator [Clostridium difficile NAP07] Length = 334 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 I++ I +++E +S + + L+ L K G+ ++ +GR GG R Sbjct: 20 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 67 >gi|260683696|ref|YP_003214981.1| hypothetical protein CD196_1960 [Clostridium difficile CD196] gi|260687356|ref|YP_003218490.1| hypothetical protein CDR20291_2003 [Clostridium difficile R20291] gi|260209859|emb|CBA63762.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213373|emb|CBE04987.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 334 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 I++ I +++E +S + + L+ L K G+ ++ +GR GG R Sbjct: 20 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 67 >gi|255656069|ref|ZP_05401478.1| hypothetical protein CdifQCD-2_10309 [Clostridium difficile QCD-23m63] Length = 179 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 I++ I +++E +S + + L+ L K G+ ++ +GR GG R Sbjct: 14 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 61 >gi|126699713|ref|YP_001088610.1| hypothetical protein CD2096 [Clostridium difficile 630] gi|254975685|ref|ZP_05272157.1| hypothetical protein CdifQC_10259 [Clostridium difficile QCD-66c26] gi|255093071|ref|ZP_05322549.1| hypothetical protein CdifC_10524 [Clostridium difficile CIP 107932] gi|255101226|ref|ZP_05330203.1| hypothetical protein CdifQCD-6_10504 [Clostridium difficile QCD-63q42] gi|255307102|ref|ZP_05351273.1| hypothetical protein CdifA_10967 [Clostridium difficile ATCC 43255] gi|255314814|ref|ZP_05356397.1| hypothetical protein CdifQCD-7_10717 [Clostridium difficile QCD-76w55] gi|255517488|ref|ZP_05385164.1| hypothetical protein CdifQCD-_10301 [Clostridium difficile QCD-97b34] gi|255650599|ref|ZP_05397501.1| hypothetical protein CdifQCD_10481 [Clostridium difficile QCD-37x79] gi|115251150|emb|CAJ68981.1| putative DNA-binding protein [Clostridium difficile] Length = 328 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 I++ I +++E +S + + L+ L K G+ ++ +GR GG R Sbjct: 14 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 61 >gi|157692743|ref|YP_001487205.1| bifunctional transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase [Bacillus pumilus SAFR-032] gi|157681501|gb|ABV62645.1| bifunctional transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase [Bacillus pumilus SAFR-032] Length = 327 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79 QI + S ++K ++ L K G VE VR + G RL R D+I+ +++ Sbjct: 21 VSSQQICDELGCSRTAVWKHMEDLRKEGYEVEAVRRK--GYRLLRKPDKISEDEIL 74 >gi|21228473|ref|NP_634395.1| hypothetical protein MM_2371 [Methanosarcina mazei Go1] gi|20906955|gb|AAM32067.1| conserved protein [Methanosarcina mazei Go1] Length = 291 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ D + +IAE + + +Q L +VE V G +GG + Sbjct: 13 ALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGPKGGYK 65 >gi|213026899|ref|ZP_03341346.1| DNA-binding transcriptional regulator IscR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 89 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +V+ A +ES C C ++ R + L ++ LV N+ Sbjct: 1 VGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQ 58 Query: 135 SSI 137 + Sbjct: 59 EVL 61 >gi|168211098|ref|ZP_02636723.1| HTH domain family [Clostridium perfringens B str. ATCC 3626] gi|170710887|gb|EDT23069.1| HTH domain family [Clostridium perfringens B str. ATCC 3626] Length = 316 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+LM + ++ +IAE +SE + + + L + +E+ G GG L Sbjct: 8 LRMLMML--RSGRKLKVKEIAEELEVSEKQVKRYKEALSEFFYIESRSGIDGGYIL 61 >gi|253577528|ref|ZP_04854841.1| biotin-acetyl-CoA-carboxylase ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843068|gb|EES71103.1| biotin-acetyl-CoA-carboxylase ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 327 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 R+L H +++ IS ++K + L + G E+ R G RL R Sbjct: 6 RLLDMLLEHPGQYISGEELSRRLSISRTAVWKQIAKLREEGYEFESAPRR--GYRLTRQP 63 Query: 71 DQITILDVVKATEES 85 D+++ ++ A + + Sbjct: 64 DKLSHAGLLHALQGT 78 >gi|326383513|ref|ZP_08205200.1| Helix-turn-helix type 11 domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197919|gb|EGD55106.1| Helix-turn-helix type 11 domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 325 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R L A+ ++A+ +E + + ++ L + G VE+VRG GG +L Sbjct: 7 RTLKLLALLQAHRLWSAIELADRLETTERTVRRDVERLRELGYPVESVRGSGGGYQLA 64 >gi|307710037|ref|ZP_07646482.1| hypothetical protein SMSK564_1312 [Streptococcus mitis SK564] gi|307619222|gb|EFN98353.1| hypothetical protein SMSK564_1312 [Streptococcus mitis SK564] Length = 88 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRG 62 ++ A H ++ +IA+ +S + K + L +AG + VR GR G Sbjct: 1 MVVLANHPNWQVYPEEIAKRKGVSRPTISKYFKILEEAGYLRQVRRKPPGRGG 53 >gi|257053832|ref|YP_003131665.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940] gi|256692595|gb|ACV12932.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940] Length = 177 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ ++ + +IAE + + +Q L +VE V G +GG + Sbjct: 17 LVNLYRDSESAVKGEEIAERVNRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|218232869|ref|YP_002367529.1| hypothetical DNA-binding protein [Bacillus cereus B4264] gi|218160826|gb|ACK60818.1| hypothetical DNA-binding protein [Bacillus cereus B4264] Length = 314 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 IR++ A++N+ ++A++ +SE + + +Q L + V + RGR GG Sbjct: 8 IRIM--LALNNNNSITAKELAKSEGVSERTILRDIQELSEIYFPVYSERGRNGGF 60 >gi|282864017|ref|ZP_06273074.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] gi|282561095|gb|EFB66640.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] Length = 345 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + + +S++AE + E + + + L+ + VE+VRGR GG RL Sbjct: 14 RVLTLLELLQSGGVRTVSELAERLDVDERTVRRYVGHLLDLDVPVESVRGRYGGYRLT 71 >gi|290961721|ref|YP_003492903.1| GntR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260651247|emb|CBG74369.1| putative GntR-family transcriptional regulator [Streptomyces scabiei 87.22] Length = 248 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++AE IS + L ++L+ L G++E RGR GG Sbjct: 49 GERLPAERELAERLGISRVTLREVLKVLQDQGLIEARRGRYGG 91 >gi|294625998|ref|ZP_06704608.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664201|ref|ZP_06729581.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599668|gb|EFF43795.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606026|gb|EFF49297.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 321 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78 +AE I L + ++ L +AG V G GG RL + A + +L Sbjct: 16 QGGRSWSGMALAERLGIHPRSLRRDIERLREAGYPVHAAPGSGGGYRLGQGAAALPLL-- 73 Query: 79 VKATEESFFVA 89 EE + Sbjct: 74 ---LEEDEALT 81 >gi|222479367|ref|YP_002565604.1| Protein of unknown function DUF293 [Halorubrum lacusprofundi ATCC 49239] gi|222452269|gb|ACM56534.1| Protein of unknown function DUF293 [Halorubrum lacusprofundi ATCC 49239] Length = 177 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ + + IAE + + +Q L +VE V G +GG + Sbjct: 14 LTALINLYGEQEDAVKGEAIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|284029300|ref|YP_003379231.1| GntR domain-containing protein [Kribbella flavida DSM 17836] gi|283808593|gb|ADB30432.1| GntR domain protein [Kribbella flavida DSM 17836] Length = 247 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV----RLCRP 69 + +A +S + L + ++ L +AG VE+ RGR GG RL RP Sbjct: 40 GERLPAERDLAARLNVSRVTLREAIRALTEAGYVESRRGRYGGTFVNERLPRP 92 >gi|256376972|ref|YP_003100632.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM 43827] gi|255921275|gb|ACU36786.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM 43827] Length = 326 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 Q+A+ ++E + + L +AG+ VE+ RG GG R+ R A Sbjct: 24 TTARQLADRLGVTERAARRYVGVLREAGVPVESERGPHGGYRIRRGAR 71 >gi|253744028|gb|EET00289.1| Hypothetical protein GL50581_2477 [Giardia intestinalis ATCC 50581] Length = 727 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 26 RISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84 I +I++ + F+ +I + L G++E+ +G G + + ++ +++K E Sbjct: 13 TIDEISQRQDATMRFVERIAKQLGHLKGVLESSQGPFPGPNMTKSELTTSLGEILKYIEA 72 Query: 85 SF 86 + Sbjct: 73 NL 74 >gi|53805091|ref|YP_113221.1| ribonuclease BN [Methylococcus capsulatus str. Bath] gi|53758852|gb|AAU93143.1| putative ribonuclease BN [Methylococcus capsulatus str. Bath] Length = 422 Score = 43.0 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 18/124 (14%) Query: 13 VLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLC 67 LMY + P + +AE+ + E+ ++L L + G++ + GR G Sbjct: 306 ALMYLIVRRFMAGQSPPGLPDLAESLNLPEVLTGELLSLLQQTGLIVAIDHGRPG-FLPA 364 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 R I +L+V +A + L A + L S+ Sbjct: 365 RDPGTIAVLEVFEALRGKADGLPVPEPVALG------------LAAAETSLSAALAGVSL 412 Query: 128 ECLV 131 Sbjct: 413 RDWA 416 >gi|320011775|gb|ADW06625.1| GntR domain protein [Streptomyces flavogriseus ATCC 33331] Length = 257 Score = 43.0 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 23/123 (18%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCR--PAD---------QITI 75 ++A IS + L ++L+ L G++E RGR GG L R PAD + + Sbjct: 65 RELAGLLGISRVTLREVLKVLQDQGLIEARRGRYGGTFVLGRTGPADGDELRRRVADVDL 124 Query: 76 LDVV--KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF------DVLTQYSI 127 DV+ + ES C + D G+ L L A D L ++ Sbjct: 125 EDVLLFREVLESGAAGLCASRGLDD---EGAERLRGALAATHEAPLPDYRRIDTLFHLTL 181 Query: 128 ECL 130 L Sbjct: 182 AEL 184 >gi|332796263|ref|YP_004457763.1| putative signal transduction protein with CBS domains [Acidianus hospitalis W1] gi|332693998|gb|AEE93465.1| putative signal transduction protein with CBS domains [Acidianus hospitalis W1] Length = 300 Score = 43.0 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + L+ + ++A+ E + I+ L G+VE+ G GG Sbjct: 12 LLALIELYNKGKKMIKSKEVADMIGKDEGTVRNIILGLKVLGLVESKPGPNGGY 65 >gi|311894230|dbj|BAJ26638.1| putative DeoR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 353 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 M + + +++ +SE + + +Q L +AGI V + RGR GG RL Sbjct: 9 MALLLQSSPGRTAAELGRELGVSERTVIRDVQALQEAGIPVRSERGRAGGYRLA 62 >gi|262282446|ref|ZP_06060214.1| DeoR-family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261737|gb|EEY80435.1| DeoR-family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 308 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|157151522|ref|YP_001450277.1| putative transcription regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157076316|gb|ABV10999.1| probable transcription regulator-like protein lin0464, putative [Streptococcus gordonii str. Challis substr. CH1] Length = 308 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A+ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|110801443|ref|YP_698237.1| hypothetical protein CPR_0913 [Clostridium perfringens SM101] gi|110681944|gb|ABG85314.1| conserved hypothetical protein [Clostridium perfringens SM101] Length = 317 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+LM + ++ +IAE +SE + + + L + +E+ G GG L Sbjct: 8 LRMLMML--RSGRKLKVKEIAEELEVSEKQVKRYKEALSEFFYIESKSGIDGGYIL 61 >gi|54025194|ref|YP_119436.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016702|dbj|BAD58072.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 323 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++AE +S L + ++ L + G V+ RG GG +L Sbjct: 32 ELAERLGVSARTLRRDVERLRELGYPVQAQRGVDGGYQLA 71 >gi|15921694|ref|NP_377363.1| hypothetical protein ST1405 [Sulfolobus tokodaii str. 7] gi|15622481|dbj|BAB66472.1| 300aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 300 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + L+ + ++A+ E + I+ L G++E+ G GG Sbjct: 12 LLALVDLYNRYKRMIKSKEVADVIGKDEGTVRNIILSLKVLGLIESKPGPNGGY 65 >gi|297562446|ref|YP_003681420.1| hypothetical protein Ndas_3513 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846894|gb|ADH68914.1| Helix-turn-helix type 11 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 322 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R+L ++ + +A A +S L + + L + G VE++RG G RL Sbjct: 7 RMLRLLSLLQTGRAWPGADLAAALEVSPRSLRRDIDRLRELGYAVESLRGPGGHYRLA 64 >gi|89053799|ref|YP_509250.1| hypothetical protein Jann_1308 [Jannaschia sp. CCS1] gi|88863348|gb|ABD54225.1| hypothetical protein Jann_1308 [Jannaschia sp. CCS1] Length = 74 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV----LRKALNAFFDVL 122 RPA +IT+ DV A S+ E + DC + + L V ++KA D L Sbjct: 2 SRPATEITVADVYIALGMSWTGPEDGEDNPPDCKIEAA--LHGVVDRAMQKAETVLVDEL 59 Query: 123 TQYSIECL 130 +I L Sbjct: 60 AIVTISDL 67 >gi|152967542|ref|YP_001363326.1| GntR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362059|gb|ABS05062.1| putative transcriptional regulator, GntR family [Kineococcus radiotolerans SRS30216] Length = 470 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +R + A ++ +S + + K + L AG+VE+ G VR RP Sbjct: 13 LRAWVDTAAPGARLPSNRELVARFAVSPVTVQKAFRRLTAAGLVESRPGVGTFVRGARP 71 >gi|158313706|ref|YP_001506214.1| helix-turn-helix type 11 domain-containing protein [Frankia sp. EAN1pec] gi|158109111|gb|ABW11308.1| Helix-turn-helix type 11 domain protein [Frankia sp. EAN1pec] Length = 337 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 VL + + ++++A+ + + + +Q L+ + VE+VRGR GG RL Sbjct: 7 HVLTLLELLQSGGTRTVAELADRLGVDGRTVRRYVQHLIDLDVPVESVRGRYGGYRLA 64 >gi|307323354|ref|ZP_07602564.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] gi|306890843|gb|EFN21819.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] Length = 360 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L+ + ++ +A+ + E + + + L+ + V +VRGR GG RL Sbjct: 8 VLALLEI-LQAGGTRTVADLADRLGVDERTVRRYIGHLIDLDVPVRSVRGRYGGYRLA 64 >gi|160936914|ref|ZP_02084278.1| hypothetical protein CLOBOL_01803 [Clostridium bolteae ATCC BAA-613] gi|158440104|gb|EDP17851.1| hypothetical protein CLOBOL_01803 [Clostridium bolteae ATCC BAA-613] Length = 232 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV----KATEE 84 ++A+ +S + + + L G++E+ +G G + + T+ D++ E+ Sbjct: 33 ELAKTYQVSRSSVRQAISRLKALGLLESRQGS--GTVIKKSGISATLSDIIPTIMFEIED 90 Query: 85 SFFVAECFASHKIDC 99 + + E +I+C Sbjct: 91 NLQIFEFHKGIQIEC 105 >gi|330834038|ref|YP_004408766.1| signal transduction protein [Metallosphaera cuprina Ar-4] gi|329566177|gb|AEB94282.1| signal transduction protein [Metallosphaera cuprina Ar-4] Length = 300 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 7/74 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----- 65 + L+ + ++A+ E + I+ L G+V++ G GG Sbjct: 12 LLALIELYNRQKKMIKSKEVADMISKDEGTVRNIILSLKVLGLVDSKPGPNGGYLPTLKA 71 Query: 66 --LCRPADQITILD 77 + I ILD Sbjct: 72 YEFVKNPSIIPILD 85 >gi|308175533|ref|YP_003922238.1| helix-turn-helix, type 11 domain-containing protein [Bacillus amyloliquefaciens DSM 7] gi|307608397|emb|CBI44768.1| helix-turn-helix, type 11 domain-containing protein [Bacillus amyloliquefaciens DSM 7] gi|328555511|gb|AEB26003.1| helix-turn-helix, type 11 domain-containing protein [Bacillus amyloliquefaciens TA208] gi|328913882|gb|AEB65478.1| helix-turn-helix, type 11 domain-containing protein [Bacillus amyloliquefaciens LL3] Length = 309 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 7/68 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M +++ ++Y + N ++AE +S +++ ++ L +AGI + T++G Sbjct: 1 MQISRLFQ-----VIYILLENGT-VTAPELAERFEVSVRTIYRDVEALSQAGIPIYTIQG 54 Query: 60 RRGGVRLC 67 + GG+ L Sbjct: 55 KGGGISLS 62 >gi|323357230|ref|YP_004223626.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273601|dbj|BAJ73746.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 102 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 L + + L+ + P + +A+ +S+ + + L+ L +AG+V + R G+ Sbjct: 17 LGNESRLALVWLL-----SQEPLTVGALADRAGLSQPLVSQHLRTLRQAGLVNSEREGKE 71 Query: 62 GGVRLCRPADQITILDVVKATEES 85 L +LD + +E Sbjct: 72 IRYALADEHVAHVVLDAIAHVQEP 95 >gi|296131311|ref|YP_003638561.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena DSM 20109] gi|296023126|gb|ADG76362.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena DSM 20109] Length = 265 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 + +A A +SE + + L AG+ V + RG GG RL R Sbjct: 24 LTAAGLATALGVSERAARRYVAVLRAAGVPVTSERGPYGGYRLGR 68 >gi|46199189|ref|YP_004856.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB27] gi|46196814|gb|AAS81229.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB27] Length = 845 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R+L Y A H + ++A S + +L L++ G V GG RL R Sbjct: 13 ALRLLAYLADHPEG-VGAKEVARLLGKSLSSAYALLHSLMEEGFVVKE---EGGFRLAR 67 >gi|55981218|ref|YP_144515.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB8] gi|55772631|dbj|BAD71072.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB8] Length = 844 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R+L Y A H + ++A S + +L L++ G V GG RL R Sbjct: 13 ALRLLAYLADHPEG-VGAKEVARLLGKSLSSAYALLHSLMEEGFVVKE---EGGFRLAR 67 >gi|301631675|ref|XP_002944923.1| PREDICTED: HTH-type transcriptional regulator lutR-like [Xenopus (Silurana) tropicalis] Length = 247 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + D ++ E +S + + L L GI+ET RG G L R Q Sbjct: 40 LPGDRLPSERELCERHGVSRSVVREALSQLKSDGIIETRRG-SGAYLLERDQRQ 92 >gi|15805096|ref|NP_293781.1| repressor protein [Deinococcus radiodurans R1] gi|6457714|gb|AAF09645.1|AE001868_7 repressor protein, putative [Deinococcus radiodurans R1] Length = 316 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +RVL + +++A +S + + + L GI VE RG G RL Sbjct: 6 SLRVLTVLELLQAREEVTGAELARRLEVSPRTVQRYVARLQDLGIPVEGRRGVGGAYRL 64 >gi|284992256|ref|YP_003410810.1| Helix-turn-helix type 11 domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065501|gb|ADB76439.1| Helix-turn-helix type 11 domain protein [Geodermatophilus obscurus DSM 43160] Length = 335 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +A+ +S L + + L + G VE RG GG +L Sbjct: 24 ADLADRLGVSVRTLRRDVDRLRELGYPVEAQRGVDGGYQLA 64 >gi|119718542|ref|YP_925507.1| helix-turn-helix, type 11 domain-containing protein [Nocardioides sp. JS614] gi|119539203|gb|ABL83820.1| Helix-turn-helix, type 11 domain protein [Nocardioides sp. JS614] Length = 327 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +R+L H +P +++A +S L + + L + G V+ VRG GG +L Sbjct: 15 LRLLSLLQTHRYWPG--AELAGRLEVSPRTLRRDIDRLRELGYDVDAVRGVAGGYQL 69 >gi|83858538|ref|ZP_00952060.1| putative transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83853361|gb|EAP91213.1| putative transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 235 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 I +A+ +SE L + L L + G+ +ET RGR GGVRL R Sbjct: 19 IKDLAKTHGVSERTLTRDLALLREQGLPIETDRGRGGGVRLDR 61 >gi|288940217|ref|YP_003442457.1| ribonuclease BN [Allochromatium vinosum DSM 180] gi|288895589|gb|ADC61425.1| ribonuclease BN [Allochromatium vinosum DSM 180] Length = 439 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 15/133 (11%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ R + A P +A+A + L L +AG + Sbjct: 320 LSIAARIA-RA--HLAAEP--PLDRETLAKAARQPARTIQTTLDLLEQAGYIVRTAEAPA 374 Query: 63 GVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 G L RP + I +LD+++ V D P+ + + ++ + A + Sbjct: 375 GYVLTRPPEAIAVLDILERVRQWGEHRVV------AADRPVEPA--IAAIESRIETALAE 426 Query: 121 VLTQYSIECLVRN 133 L S+ L Sbjct: 427 SLKDLSLRDLAAE 439 >gi|295835806|ref|ZP_06822739.1| transcriptional regulatory protein [Streptomyces sp. SPB74] gi|295825709|gb|EFG64416.1| transcriptional regulatory protein [Streptomyces sp. SPB74] Length = 283 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67 +R + + +AE +S + + +Q L G VETV G R L Sbjct: 96 ALRAALDSGELEPGRVYSAPALAERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 153 Query: 68 RPADQIT-ILDVVKATE 83 R + + + +V+ E Sbjct: 154 RTPAEASALAEVLLLIE 170 >gi|194016904|ref|ZP_03055517.1| biotin-[acetyl-CoA-carboxylase] ligase [Bacillus pumilus ATCC 7061] gi|194011510|gb|EDW21079.1| biotin-[acetyl-CoA-carboxylase] ligase [Bacillus pumilus ATCC 7061] Length = 327 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79 QI + S ++K ++ L K G VE VR + G RL R D+I+ +++ Sbjct: 21 VSSQQICDELGCSRTAVWKHIEDLRKEGYEVEAVRRK--GYRLLRKPDKISEDEIL 74 >gi|134099902|ref|YP_001105563.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006060|ref|ZP_06564033.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912525|emb|CAM02638.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 315 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + ++++AE + E + + + L+ I V +VRGR GG RL Sbjct: 5 LQRGGTWTVAELAERLDVDERTVRRYVGHLLDLDIPVRSVRGRHGGYRLS 54 >gi|150376176|ref|YP_001312772.1| GntR domain-containing protein [Sinorhizobium medicae WSM419] gi|150030723|gb|ABR62839.1| GntR domain protein [Sinorhizobium medicae WSM419] Length = 243 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++AE +S + + L L G+VE RG G L RP Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRP 86 >gi|83950931|ref|ZP_00959664.1| transcriptional regulator, GntR family protein [Roseovarius nubinhibens ISM] gi|83838830|gb|EAP78126.1| transcriptional regulator, GntR family protein [Roseovarius nubinhibens ISM] Length = 233 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-------TILDVVK 80 +AE+ +S + L L GIV++ RG G L RP ++ ++ DV + Sbjct: 36 EALAESFGVSRPIVRGALSRLRDDGIVQSRRG-SGSYVLRRPDRELISFVPLESVSDVQR 94 Query: 81 ATE 83 E Sbjct: 95 CYE 97 >gi|303243770|ref|ZP_07330111.1| putative signal transduction protein with CBS domains [Methanothermococcus okinawensis IH1] gi|302486012|gb|EFL48935.1| putative signal transduction protein with CBS domains [Methanothermococcus okinawensis IH1] Length = 312 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + P + ++IA + + +Q L +V+ V G +GG Sbjct: 18 LIAIYREKNRPVKGTEIAIRLNRNPGTIRNQMQALRALNLVDGVPGPKGGY 68 >gi|297160229|gb|ADI09941.1| IclR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 253 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + +RVL H+ + IA + L ++L+ L + G VE V G Sbjct: 14 VRHALRVL-EVVSHHTNGVTDAGIARETGLPPAHLAQLLRMLRREGYVEQV--ADGAY 68 >gi|56477733|ref|YP_159322.1| IclR family transciptional regulator [Aromatoleum aromaticum EbN1] gi|56313776|emb|CAI08421.1| putative transcription regulator protein, IclR family [Aromatoleum aromaticum EbN1] Length = 263 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++L A H D P + QIA+ + +IL + ++G VE RG G RL Sbjct: 21 MKLLDVLAHHPD-PAPLKQIAQETGLHPSTAHRILGAMSQSGFVE--RGEGGTYRLG--- 74 Query: 71 DQITILDV 78 I +L++ Sbjct: 75 --IRLLEL 80 >gi|163744181|ref|ZP_02151541.1| probable transcriptional regulator protein, GntR family [Oceanibulbus indolifex HEL-45] gi|161380999|gb|EDQ05408.1| probable transcriptional regulator protein, GntR family [Oceanibulbus indolifex HEL-45] Length = 221 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-------TILDVVKAT 82 +AE+ +S + L L GIV++ RG G L RP ++ ++ DV + Sbjct: 26 LAESFGVSRPVVRGALSRLRDDGIVQSRRG-SGSYVLRRPDRELISFVPLESVSDVQRCY 84 Query: 83 E 83 E Sbjct: 85 E 85 >gi|220930914|ref|YP_002507822.1| biotin (acetyl-CoA carboxylase) synthetase [Halothermothrix orenii H 168] gi|219992224|gb|ACL68827.1| biotin (acetyl-CoA carboxylase) synthetase [Halothermothrix orenii H 168] Length = 326 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75 +N I++ +S ++K ++ L K G +E+V R G L D+IT+ Sbjct: 14 LHNNNGKFISGENISDTLGVSRTAVWKYIKNLRKKGYIIESVPRR--GYHLVEVPDKITV 71 Query: 76 LDVV 79 +V+ Sbjct: 72 TEVL 75 >gi|288931195|ref|YP_003435255.1| signal transduction protein with CBS domains [Ferroglobus placidus DSM 10642] gi|288893443|gb|ADC64980.1| putative signal transduction protein with CBS domains [Ferroglobus placidus DSM 10642] Length = 295 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 Y + L + +IAE + + +Q L G+VE V G +GG R Sbjct: 12 YALVTLYK--KKGGGSVKGEEIAELINRNPGTVRNQMQALRALGLVEGVPGPKGGYR 66 >gi|218512491|ref|ZP_03509331.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 81 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 6/62 (9%) Query: 81 ATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 A E C C G C + ++ +A A+ + L + + LV + Sbjct: 1 AVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWRETLRRVRLSDLVDSL 60 Query: 135 SS 136 S Sbjct: 61 SQ 62 >gi|108799028|ref|YP_639225.1| GntR family transcriptional regulator [Mycobacterium sp. MCS] gi|119868143|ref|YP_938095.1| GntR family transcriptional regulator [Mycobacterium sp. KMS] gi|126434631|ref|YP_001070322.1| GntR family transcriptional regulator [Mycobacterium sp. JLS] gi|108769447|gb|ABG08169.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS] gi|119694232|gb|ABL91305.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS] gi|126234431|gb|ABN97831.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS] Length = 240 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + ++A +S + + ++ L +AG + + RGR GG L Sbjct: 41 APGESLPPERELAARLGVSRDTVREAIKSLAEAGYLVSRRGRYGGTFLAEE 91 >gi|320449824|ref|YP_004201920.1| acetyl-coenzyme A synthetase [Thermus scotoductus SA-01] gi|320149993|gb|ADW21371.1| acetyl-coenzyme A synthetase [Thermus scotoductus SA-01] Length = 843 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +R+L Y A H + + ++A S + +L L + G V+T RG RL + Sbjct: 13 ALRILAYLAEHPEG-VEVKEVARLLGKSLSTAYALLNSLAEEGFAVKTERG----YRLGQ 67 Query: 69 P 69 Sbjct: 68 A 68 >gi|169828096|ref|YP_001698254.1| hypothetical protein Bsph_2573 [Lysinibacillus sphaericus C3-41] gi|168992584|gb|ACA40124.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 46 Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 23/35 (65%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 P + Q+ E+ +S +L KIL LVKAG++E++ Sbjct: 11 EPIGVQQLVESQGVSTTYLSKILTNLVKAGMIESI 45 >gi|307325408|ref|ZP_07604610.1| GntR domain protein [Streptomyces violaceusniger Tu 4113] gi|306888877|gb|EFN19861.1| GntR domain protein [Streptomyces violaceusniger Tu 4113] Length = 249 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++A+ IS + L ++L+ L G+VE+ RGR GG Sbjct: 44 LVPDGGRLPAERELADRLRISRVTLREVLKVLQDQGLVESRRGRYGG 90 >gi|32140298|gb|AAP69588.1| putative repressor [Streptomyces griseoflavus] Length = 341 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R L ++ +AE +S + + + L + G V +G G RL R Sbjct: 5 RTLELLSLLQTQREWTGDGLAERLGVSPRTVRRDINRLRELGYPVTATKGPSGSYRLSRG 64 Query: 70 AD 71 A Sbjct: 65 AR 66 >gi|84497334|ref|ZP_00996156.1| putative DeoR-family transcriptional regulator [Janibacter sp. HTCC2649] gi|84382222|gb|EAP98104.1| putative DeoR-family transcriptional regulator [Janibacter sp. HTCC2649] Length = 324 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 18/96 (18%) Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR---- 65 R+L + +++A + E + K ++ L + G +++VRG GG R Sbjct: 7 RLLAMLGQLQARDIVSGTELAARLDVGERTIRKDIERLRELGYPIDSVRGPAGGYRFGDH 66 Query: 66 -----LCRPADQ-----ITILDV--VKATEESFFVA 89 L D+ + + V V+ EES +A Sbjct: 67 GRLPPLLLEPDEAVAVAVGLGSVAAVRGIEESSALA 102 >gi|256810527|ref|YP_003127896.1| putative signal transduction protein with CBS domains [Methanocaldococcus fervens AG86] gi|256793727|gb|ACV24396.1| putative signal transduction protein with CBS domains [Methanocaldococcus fervens AG86] Length = 297 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + P + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64 >gi|78223975|ref|YP_385722.1| ribonuclease BN [Geobacter metallireducens GS-15] gi|78195230|gb|ABB32997.1| tRNA-processing RNAse BN [Geobacter metallireducens GS-15] Length = 453 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 15/132 (11%) Query: 8 DYGIRVLMY---CAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++Y A HND P I+ +AE + E + ++L+ L G++ G Sbjct: 318 RLAL-AVIYEISLAFHNDRPPWSITGLAEHLDVPERSVRELLECLEDEGVLAAGCGDDPL 376 Query: 64 VRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 R + I + +V+ + + + + + + A Sbjct: 377 YLPARDLEHIRVGEVLSSLRNQGVGLPGQLGGEDHV--------VVDDLWEAIEAAVRSA 428 Query: 122 LTQYSIECLVRN 133 L S L Sbjct: 429 LGDLSFRDLAER 440 >gi|295839828|ref|ZP_06826761.1| transcriptional regulator [Streptomyces sp. SPB74] gi|295827667|gb|EFG65527.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 173 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++AE +S L ++L L G+ E+ RGR GG Sbjct: 56 LVAPGERLPPERELAERLRVSRATLREVLAVLHAEGLAESRRGRYGG 102 >gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [Aeropyrum pernix K1] gi|116062605|dbj|BAA79958.2| conserved hypothetical protein [Aeropyrum pernix K1] Length = 299 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M LT + L+ + + ++AEA E + ++ L G+VE+ G Sbjct: 1 MKMLTSLQREVLETLVSLYERHKRMIKSKEVAEALGKDEGTVRNVIMWLKSLGLVESRTG 60 Query: 60 RRGGVR 65 GG Sbjct: 61 PAGGYM 66 >gi|126725720|ref|ZP_01741562.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] gi|126704924|gb|EBA04015.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] Length = 107 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 19/114 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D I + + ++L L A L R + I + DV Sbjct: 7 NPDRLRISLDITNHAGANPAAVRRVLGRLRIA--------------LARHPESIILADVY 52 Query: 80 KATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFDVLTQYSIECL 130 A +ES + C + C L SV+ + + + ++ + Sbjct: 53 LALDESLIATD-GDQQASTCSVDYALQRCVL-SVMDEIEQSVIQHRGKTTLSEV 104 >gi|327401594|ref|YP_004342433.1| biotin/acetyl-CoA-carboxylase ligase [Archaeoglobus veneficus SNP6] gi|327317102|gb|AEA47718.1| biotin/acetyl-CoA-carboxylase ligase [Archaeoglobus veneficus SNP6] Length = 309 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + R D L P +IA +S ++K ++ L KAG V R + Sbjct: 1 MKIVVRRDDA--ALAVLKSLKKGPVSGEEIATKLGVSRTAVWKAVEKLKKAGYVIDAR-K 57 Query: 61 RGGVRLCRPAD--QITILDV 78 R G L + + DV Sbjct: 58 RVGYVLVSSPEFSAYEVADV 77 >gi|76802391|ref|YP_327399.1| hypothetical protein NP3506A [Natronomonas pharaonis DSM 2160] gi|76558256|emb|CAI49844.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160] Length = 179 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ ++ + IAE + + +Q L +VE V G +GG + Sbjct: 17 LINLYRESESAVKGEDIAEKVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|289192335|ref|YP_003458276.1| putative signal transduction protein with CBS domains [Methanocaldococcus sp. FS406-22] gi|288938785|gb|ADC69540.1| putative signal transduction protein with CBS domains [Methanocaldococcus sp. FS406-22] Length = 298 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + P + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64 >gi|121607951|ref|YP_995758.1| GntR domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552591|gb|ABM56740.1| transcriptional regulator, GntR family [Verminephrobacter eiseniae EF01-2] Length = 270 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 12/73 (16%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG------------VRLCR 68 +D + Q+A+A +S+ + + L+ L+KA IV RGR GG + L Sbjct: 61 DDRLPSVEQLAQAMNVSKPVIGEALKVLIKAKIVRVQRGRSGGLFVLTNNVPDGVLALTA 120 Query: 69 PADQITILDVVKA 81 +++ ++++A Sbjct: 121 QLRHVSLSEIIEA 133 >gi|172039710|ref|YP_001799424.1| ArsR family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171851014|emb|CAQ03990.1| putative transcriptional regulator (ArsR family) [Corynebacterium urealyticum DSM 7109] Length = 115 Score = 42.2 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A P + ++ E +S+ + L+ L +AG++E VR Sbjct: 44 LRLLSRLAAEGCGPVSVGELTERSGLSQPTVSHHLKRLTEAGLLEKVR 91 >gi|331697835|ref|YP_004334074.1| regulatory protein DeoR [Pseudonocardia dioxanivorans CB1190] gi|326952524|gb|AEA26221.1| regulatory protein DeoR [Pseudonocardia dioxanivorans CB1190] Length = 319 Score = 42.2 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R+L ++ Y + ++A+ +S L + ++ L + G V T RG GG +L Sbjct: 6 RILRLLSLLQTYRHWSGDELAQRLAVSPRTLRRDVERLRELGYPVLTSRGTYGGYQLA 63 >gi|326333775|ref|ZP_08200008.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325948357|gb|EGD40464.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 318 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +A +SE + + L + G VE+VRG G RL Sbjct: 22 TGADLATRLDVSERTVRNDMTKLRELGYPVESVRGPGGRYRLG 64 >gi|289522963|ref|ZP_06439817.1| pur operon repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503506|gb|EFD24670.1| pur operon repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 263 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFL----FKILQPLVKAGI--V 54 M +++ R++ A H +S IA+ +S+ L I + G + Sbjct: 1 MKISRPERIA-RIVWRLAKHPSQSFSLSDIAKEFEVSKTVLSDDVEIISNAMNDEGCSRI 59 Query: 55 ETVRGRRGGVRL 66 RGR GG L Sbjct: 60 IIDRGRGGGAYL 71 >gi|290956054|ref|YP_003487236.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260645580|emb|CBG68671.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 371 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R L A + P ++A +SE L K L+ L AG++E R R G L R Sbjct: 294 LRALRLIA---ERPRSTQELAPLVGVSEAALSKHLRVLADAGLLE--RRREGYYVLYR 346 >gi|124003262|ref|ZP_01688112.1| transcriptional regulator, MarR family [Microscilla marina ATCC 23134] gi|123991360|gb|EAY30791.1| transcriptional regulator, MarR family [Microscilla marina ATCC 23134] Length = 323 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 20/35 (57%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +++IA IS + +I++ L KAG+V ++ Sbjct: 55 ETVSVTEIAHYVGISHPAVSQIIKELKKAGLVSSI 89 >gi|134045572|ref|YP_001097058.1| BadM/Rrf2 family transcriptional regulator [Methanococcus maripaludis C5] gi|132663197|gb|ABO34843.1| transcriptional regulator, BadM/Rrf2 family [Methanococcus maripaludis C5] Length = 144 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ R+L + + +IA A + + ++ L G VET +G+ Sbjct: 1 MKIDGLTE---RILTLL----EKYSTTREIAAAMETHPKNIDRYIRVLRDLGFVETKKGK 53 Query: 61 RGGVRLC 67 GGV L Sbjct: 54 TGGVFLT 60 >gi|282865527|ref|ZP_06274578.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] gi|282559571|gb|EFB65122.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] Length = 353 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + + L G VE RG GG RL P Sbjct: 24 SELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGRAMPP 71 >gi|262039117|ref|ZP_06012450.1| helix-turn-helix, type 11 domain-containing protein [Leptotrichia goodfellowii F0264] gi|261746906|gb|EEY34412.1| helix-turn-helix, type 11 domain-containing protein [Leptotrichia goodfellowii F0264] Length = 296 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + + + +L+ N ++AE +S +++ ++ L AGI V + RG Sbjct: 1 MQINRLFE-TVHMLL-----NKKSMTARELAEHFEVSIRTVYRDIETLTFAGIPVYSTRG 54 Query: 60 RRGGVRL 66 + GG++L Sbjct: 55 KNGGIKL 61 >gi|126179865|ref|YP_001047830.1| signal transduction protein [Methanoculleus marisnigri JR1] gi|125862659|gb|ABN57848.1| putative signal transduction protein with CBS domains [Methanoculleus marisnigri JR1] Length = 293 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LCRP 69 + L+ + + + +IAE + + +Q L G+V+ V G +GG Sbjct: 11 LITLITLYHQSSHSIKGEEIAEVLKRNPGTVRNQMQALKALGLVDGVPGPKGGYSPTAGA 70 Query: 70 ADQITILDV 78 ++ + D+ Sbjct: 71 YRELNLGDL 79 >gi|15669417|ref|NP_248227.1| hypothetical protein MJ_1232 [Methanocaldococcus jannaschii DSM 2661] gi|2496164|sp|Q58629|Y1232_METJA RecName: Full=Uncharacterized protein MJ1232 gi|1591864|gb|AAB99237.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 296 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + P + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64 >gi|322375947|ref|ZP_08050458.1| HTH domain protein [Streptococcus sp. C300] gi|321279215|gb|EFX56257.1| HTH domain protein [Streptococcus sp. C300] Length = 308 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + ++ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLSLSNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|281356405|ref|ZP_06242897.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC BAA-548] gi|281317097|gb|EFB01119.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC BAA-548] Length = 253 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 R+L + + D P ++ ++AE IS I++ + + G V + GRR G Sbjct: 10 RILEHLSAAPDRPCQLGELAELLNISAPAAANIVRAMTELGYVRAL-GRRRGYL 62 >gi|291003751|ref|ZP_06561724.1| DeoR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 312 Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++A +SE + + + L +AG+ V + RGR GG RL Sbjct: 1 MLLLQARETMTAAELARELEVSERTITRDVLALSEAGVPVYSERGRGGGYRL 52 >gi|239978540|ref|ZP_04701064.1| GntR family transcriptional regulator [Streptomyces albus J1074] gi|291450436|ref|ZP_06589826.1| GntR-family transcriptional regulator [Streptomyces albus J1074] gi|291353385|gb|EFE80287.1| GntR-family transcriptional regulator [Streptomyces albus J1074] Length = 253 Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++AE +S + L ++L+ L G+VE RGR GG Sbjct: 52 LVPAGERLPAERELAERIGVSRVTLREVLKALQDQGLVEPRRGRYGG 98 >gi|296134276|ref|YP_003641523.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR] gi|296032854|gb|ADG83622.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR] Length = 76 Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 14/66 (21%) Query: 1 MHLTK--RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + K RT Y P I+ ++ ++ + + L G++ R Sbjct: 13 MRILKENRTSYA------------NPMNSWAISRRLNVTPSYIREQAKQLSDRGLLNVRR 60 Query: 59 GRRGGV 64 G GG Sbjct: 61 GPGGGY 66 >gi|271962526|ref|YP_003336722.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505701|gb|ACZ83979.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 360 Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++A+ +SE L + + L + G V RG GG +L Sbjct: 25 ELADRLGVSERTLRRDVDRLRELGYPVSAARGTDGGYQLA 64 >gi|257387229|ref|YP_003177002.1| hypothetical protein Hmuk_1169 [Halomicrobium mukohataei DSM 12286] gi|257169536|gb|ACV47295.1| Protein of unknown function DUF293 [Halomicrobium mukohataei DSM 12286] Length = 176 Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 17/94 (18%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA-- 70 D P Q+AE S + L L G+VE+V+G GG + R Sbjct: 26 ADGPVTSGQVAEILDRSSGTVQNQLTTLQSIGLVESVQGPTGGYEPTPAAFAAIGREPMD 85 Query: 71 --DQITI---LDVVKATEESFFVAECFASHKIDC 99 + +T+ D + AT E + H +C Sbjct: 86 DAETVTVSQAFDRIDATVEEIDLTN--VHHPTEC 117 >gi|126464384|ref|YP_001045497.1| regulatory protein GntR, HTH [Rhodobacter sphaeroides ATCC 17029] gi|126106195|gb|ABN78725.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides ATCC 17029] Length = 248 Score = 41.9 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + +++AE +S+ + + ++ L ++ + RG +GGV + P+ I Sbjct: 30 AERLPSEAELAERFDVSQPTVREAMKILAAKKLIRSKRGPKGGVFVNPPSLDI 82 >gi|302526543|ref|ZP_07278885.1| transcriptional regulator [Streptomyces sp. AA4] gi|302435438|gb|EFL07254.1| transcriptional regulator [Streptomyces sp. AA4] Length = 250 Score = 41.9 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVR 65 G+ L A D P I ++A + ++I++ L G+V VRG G G R Sbjct: 48 GLTALEVLA-DADTPLSIGELAARLGLHRSITYRIVRTLEDHGLV--VRGANGELELGAR 104 Query: 66 LCRPADQIT 74 L A ++ Sbjct: 105 LAALARNVS 113 >gi|284993360|ref|YP_003411915.1| hypothetical protein Gobs_5016 [Geodermatophilus obscurus DSM 43160] gi|284066606|gb|ADB77544.1| conserved hypothetical protein [Geodermatophilus obscurus DSM 43160] Length = 95 Score = 41.9 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRR 61 VL+ A D R+ +IA I+ + IL+ L +AG V + RGRR Sbjct: 17 HVLLAVAADPD--VRVEEIAARVGITSRAVLAILRDLEEAGYVTRSRRGRR 65 >gi|221370142|ref|YP_002521238.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides KD131] gi|221163194|gb|ACM04165.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides KD131] Length = 248 Score = 41.9 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + +++AE +S+ + + ++ L ++ + RG +GGV + P+ I Sbjct: 30 AERLPSEAELAERFDVSQPTVREAMKILAAKKLIRSKRGPKGGVFVNPPSLDI 82 >gi|297154977|gb|ADI04689.1| DeoR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 332 Score = 41.9 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++AE ++ + + ++ L G V+ +G GG +L Sbjct: 14 RVLTLLGLLQQRRVWTGPELAERLGVTPRTVRRDVERLRALGYPVQATQGVGGGYQLG 71 >gi|307331499|ref|ZP_07610614.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] gi|306882877|gb|EFN13948.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] Length = 320 Score = 41.9 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++A+ +S L + + L + G VE RG GG +L Sbjct: 24 TELADRLGVSVRTLRRDVDRLRELGYPVEAQRGVDGGYQLA 64 >gi|327310932|ref|YP_004337829.1| hypothetical protein TUZN_1036 [Thermoproteus uzoniensis 768-20] gi|326947411|gb|AEA12517.1| hypothetical protein TUZN_1036 [Thermoproteus uzoniensis 768-20] Length = 192 Score = 41.9 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRRGGVR 65 +R L+ ++ E +SE L ++Q L +AG+VE +GR R Sbjct: 16 ALRHLVD----GARYVTFRELVERLGVSERRLRSVVQELRRAGLVEAYLDPSKGRAILYR 71 Query: 66 LC 67 L Sbjct: 72 LS 73 >gi|120611257|ref|YP_970935.1| GntR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589721|gb|ABM33161.1| transcriptional regulator, GntR family [Acidovorax citrulli AAC00-1] Length = 270 Score = 41.9 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG---------RRG 62 R L+ D S+I A +S + + + L AG+VET G G Sbjct: 46 RALV----PGDKLPTESEIMRAHDVSRTVVREAISRLQAAGLVETRHGIGTFVLPPRAGG 101 Query: 63 GVRLCRPADQITI-LDVVKATE 83 G RL +++ DV+ E Sbjct: 102 GFRL--DPSELSTSADVLAVLE 121 >gi|256376212|ref|YP_003099872.1| GntR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920515|gb|ACU36026.1| GntR domain protein [Actinosynnema mirum DSM 43827] Length = 233 Score = 41.9 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 19/43 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 D +A +S L + L+ L G VE+ RGR GG Sbjct: 37 GDRLPAERDLAARLGVSRATLREALKSLQDNGYVESRRGRYGG 79 >gi|261402995|ref|YP_003247219.1| putative signal transduction protein with CBS domains [Methanocaldococcus vulcanius M7] gi|261369988|gb|ACX72737.1| putative signal transduction protein with CBS domains [Methanocaldococcus vulcanius M7] Length = 296 Score = 41.9 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + P + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64 >gi|16120256|ref|NP_395844.1| hypothetical protein VNG6357H [Halobacterium sp. NRC-1] gi|169237622|ref|YP_001690825.1| hypothetical protein OE6031R [Halobacterium salinarum R1] gi|10584392|gb|AAG20979.1| Vng6357h [Halobacterium sp. NRC-1] gi|167728399|emb|CAP15208.1| hypothetical protein OE6031R [Halobacterium salinarum R1] Length = 196 Score = 41.9 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 + H P +A+ + K L L G VET G +GG R + + + Sbjct: 33 HVVAHTYSPVSADAVADDARTAPKTARKHLNTLADEGFVETTPGEQGGTLYRRSPESLVV 92 Query: 76 ---LDVVKATEESFFVAE 90 D+++ V Sbjct: 93 EQAADILEHVSTDELVTR 110 >gi|197121149|ref|YP_002133100.1| ribonuclease BN [Anaeromyxobacter sp. K] gi|196170998|gb|ACG71971.1| ribonuclease BN [Anaeromyxobacter sp. K] Length = 439 Score = 41.9 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 17/128 (13%) Query: 12 RVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 R L+ A D +A + + L L + IV ++ GG+ R Sbjct: 300 RTLLLVAQAFDRGEDAPDPGDVAARLGATPEEASEALAALRQRAIVVSL--ADGGLVPAR 357 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 P ++IT+LDV +A L+ +L + L + Sbjct: 358 PLEKITLLDVRRAVSGREA------------RPDERGILSEILTDLESKAAGQLDAITFR 405 Query: 129 CLVRNRSS 136 L + Sbjct: 406 DLCDRERA 413 >gi|146304862|ref|YP_001192178.1| signal transduction protein [Metallosphaera sedula DSM 5348] gi|145703112|gb|ABP96254.1| putative signal transduction protein with CBS domains [Metallosphaera sedula DSM 5348] Length = 300 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + L+ + ++A+ E + I+ L G+V++ G GG Sbjct: 12 LLALIELYNRQKKMIKSKEVADMISKDEGTVRNIILSLKVLGLVDSKPGPNGGYL 66 >gi|150389956|ref|YP_001320005.1| helix-turn-helix, type 11 domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949818|gb|ABR48346.1| Helix-turn-helix, type 11 domain protein [Alkaliphilus metalliredigens QYMF] Length = 315 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL--CRPAD 71 MY + R+ +IAEA ++ + K Q L AG V + GR GG L R D Sbjct: 10 MYFLLQVRGAMRVKEIAEALEVTPRMVKKYKQDLEMAGIYVGSKLGRAGGYYLENKRRLD 69 Query: 72 QITILD 77 I + + Sbjct: 70 AIGLTE 75 >gi|172057480|ref|YP_001813940.1| helix-turn-helix type 11 domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990001|gb|ACB60923.1| Helix-turn-helix type 11 domain protein [Exiguobacterium sibiricum 255-15] Length = 295 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR---- 65 ++V+ + ++AEAC +S + + L L G + + RG GG R Sbjct: 6 LKVMRLL--NRQQLLTARELAEACGVSLRTIQRDLLELEANGYPIYSERGPAGGYRVLPN 63 Query: 66 -----LC-RPADQITI 75 L R + IT+ Sbjct: 64 RLLPPLALREQEAITL 79 >gi|329941046|ref|ZP_08290326.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329300340|gb|EGG44238.1| transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 332 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 11 IRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 IR+++ P +++A +SE + + Q L +AGI V RGR GG RL Sbjct: 7 IRMVLLL---QGRPVMTAAELARELEVSERTVARDAQALSEAGIPVYADRGRAGGYRL 61 >gi|302551698|ref|ZP_07304040.1| helix-turn-helix type 11 domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302469316|gb|EFL32409.1| helix-turn-helix type 11 domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 329 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + + ++++A+ + + + + L+ + VE+VRGR GG RL Sbjct: 7 RVLTLLELLQSGGTRTVAELADRLGVEGRTVRRYVDQLIDLDVPVESVRGRYGGYRLA 64 >gi|134102286|ref|YP_001107947.1| DeoR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914909|emb|CAM05022.1| DeoR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 311 Score = 41.5 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++A +SE + + + L +AG+ V + RGR GG RL Sbjct: 3 LQARETMTAAELARELEVSERTITRDVLALSEAGVPVYSERGRGGGYRL 51 >gi|291302195|ref|YP_003513473.1| helix-turn-helix type 11 domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290571415|gb|ADD44380.1| Helix-turn-helix type 11 domain protein [Stackebrandtia nassauensis DSM 44728] Length = 313 Score = 41.5 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++AE S L + + L + G VET RG G RL P Sbjct: 9 QGGRSWTGIELAERLSTSPRTLRRDIDRLRELGYPVETTRGPGGHYRLVAGSAMPP 64 >gi|55377338|ref|YP_135188.1| hypothetical protein rrnAC0451 [Haloarcula marismortui ATCC 43049] gi|55230063|gb|AAV45482.1| unknown [Haloarcula marismortui ATCC 43049] Length = 177 Score = 41.5 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ ++ + IAE + + +Q L +VE V G +GG + Sbjct: 17 LVNLYRESESAVKGEDIAEKVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|222080981|ref|YP_002540344.1| transcriptional repressor protein [Agrobacterium radiobacter K84] gi|221725660|gb|ACM28749.1| transcriptional repressor protein [Agrobacterium radiobacter K84] Length = 271 Score = 41.5 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 6/102 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +R+L P +S+IA+ C + + L V+AG+VE GR G L R Sbjct: 23 ALRLLQAMTTVKG-PLTLSEIAKQCDMPLSKAHRYLASFVQAGLVE-QAGRSGKYNLGRG 80 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 A + + + A E FV C G L +V Sbjct: 81 A--VLLG--LAALERHDFVNRAADDLPDLCAETGLTALLAVW 118 >gi|170781232|ref|YP_001709564.1| DeoR family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155800|emb|CAQ00922.1| putative DeoR-family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 328 Score = 41.5 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 D+P RI +AE ++ + + ++ L + G + +V+G GG RL A+ Sbjct: 18 RRDWPGRI--LAERLEVTPRTVRRDVERLRELGYEIRSVKGPDGGYRLAAGAE 68 >gi|291302840|ref|YP_003514118.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572060|gb|ADD45025.1| transcriptional regulator, ArsR family [Stackebrandtia nassauensis DSM 44728] Length = 120 Score = 41.5 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 19/109 (17%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR 61 L+ T +R++ Y A R+ + E +++ + K L L G+V + GR+ Sbjct: 19 LSDETR--LRIVQYLAA---GEARVVDLTEQLGLAQSTVSKHLACLRDCGLVASRAEGRQ 73 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110 L RP ++D++ A E V C + Sbjct: 74 AFYSLSRP----ELMDLLSAAEGVLAATG---------HAVAVCPTHGI 109 >gi|126347875|emb|CAJ89595.1| putative DeoR-family transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 354 Score = 41.5 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S L + + L + G V V+G GG RL Sbjct: 36 LAERLDVSPRTLRRDVDRLRELGYPVVAVKGPDGGYRL 73 >gi|298243829|ref|ZP_06967636.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297556883|gb|EFH90747.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 336 Score = 41.5 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +LM ++AE +SE +++ ++ L AGI + T RG GG +L Sbjct: 9 ILMLL--QTRRHVTAGELAERLEVSERTVYRDVEALSAAGIPIYTERGPGGGCKLT 62 >gi|326781425|ref|ZP_08240690.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1] gi|326661758|gb|EGE46604.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1] Length = 326 Score = 41.5 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + ++ + ++++ +SE + L+ L AG+ V +VRGR GG RL Sbjct: 6 LVAVLLL-LQRREQVTAAEVSRELDVSERTARRDLEALAMAGVPVYSVRGRGGGWRL 61 >gi|254387210|ref|ZP_05002476.1| IclR-family transcriptional regulator [Streptomyces sp. Mg1] gi|194346021|gb|EDX26987.1| IclR-family transcriptional regulator [Streptomyces sp. Mg1] Length = 252 Score = 41.5 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 Y +RVL A H +QIA + + L +L L + G V Sbjct: 16 YALRVLETIARHTGG-VTNAQIARETGLPAVHLTPMLLMLRREGYV 60 >gi|182440751|ref|YP_001828470.1| DeoR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469267|dbj|BAG23787.1| putative DeoR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 336 Score = 41.5 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + ++ + ++++ +SE + L+ L AG+ V +VRGR GG RL Sbjct: 16 LVAVLLL-LQRREQVTAAEVSRELDVSERTARRDLEALAMAGVPVYSVRGRGGGWRL 71 >gi|311743825|ref|ZP_07717631.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312955|gb|EFQ82866.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 120 Score = 41.5 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 14/76 (18%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR- 60 L+ T + +L + D P ++++ + + + L L +AG+V+ R GR Sbjct: 34 LSDTTR--LHLLWHL---GDGPATVTELVDRTGAPRTGVSQHLARLRRAGLVDVTRSGRF 88 Query: 61 -----RGGV--RLCRP 69 RGG RL R Sbjct: 89 QHYSLRGGHVARLVRE 104 >gi|319442671|ref|ZP_07991827.1| putative transcription regulator [Corynebacterium variabile DSM 44702] Length = 116 Score = 41.5 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 7 TDYG-----------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 T Y +R+L A P + + IS+ + L+ LV AG+++ Sbjct: 30 TRYAGLFTALSDPARLRILSEIAAGGCVPVTVGDLTTRVGISQPTVSHHLKKLVDAGLLD 89 Query: 56 TVR 58 VR Sbjct: 90 RVR 92 >gi|198284025|ref|YP_002220346.1| putative winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248546|gb|ACH84139.1| putative two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 252 Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 17/82 (20%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIA-----EACCISELFLFKILQPLVK------ 50 L++R R L Y A+H D +IA I E + + L K Sbjct: 168 RLSRRL---FRFLHYLALHPDRTFSSREIANVLTDGRSLIQENSVAAQVHRLRKCLEKAG 224 Query: 51 -AGIVETVRGRRGGVRLCRPAD 71 A +ETV G G RL P Sbjct: 225 AAEWLETVHGF--GYRLSLPPK 244 >gi|567887|gb|AAD15248.1| putative repressor [Streptomyces peucetius] Length = 340 Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 N ++AE +S L + ++ L G V+ + G GG RL Sbjct: 16 QNSRDWPGRKLAERLGVSPRTLRRDVERLRDLGYPVQAIPGVGGGYRL 63 >gi|145595859|ref|YP_001160156.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305196|gb|ABP55778.1| transcriptional regulator, AraC family [Salinispora tropica CNB-440] Length = 232 Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 V+ + H D P ++++A SE L ++ L G+ E VR R RL A + Sbjct: 8 VMAHLERHLDQPVDVAELARIAATSEYHLRRLFSALAGIGLSEYVRRR----RLTVAAAE 63 Query: 73 I-----TILDV 78 + ++LD+ Sbjct: 64 VLAGERSLLDI 74 >gi|326778715|ref|ZP_08237980.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1] gi|326659048|gb|EGE43894.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1] Length = 383 Score = 41.5 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++AE +S + + + L G VE RG GG RL P Sbjct: 25 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGTAMPP 71 >gi|261418084|ref|YP_003251766.1| XkdB [Geobacillus sp. Y412MC61] gi|319767957|ref|YP_004133458.1| hypothetical protein GYMC52_2949 [Geobacillus sp. Y412MC52] gi|261374541|gb|ACX77284.1| XkdB [Geobacillus sp. Y412MC61] gi|317112823|gb|ADU95315.1| hypothetical protein GYMC52_2949 [Geobacillus sp. Y412MC52] Length = 306 Score = 41.5 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 P ++++IA SE + + + L G +ETVR G Sbjct: 52 GGRPVKLAEIAAELGGSERTVKRNIARLKDEGYIETVRAPYG 93 >gi|145224641|ref|YP_001135319.1| regulatory protein GntR, HTH [Mycobacterium gilvum PYR-GCK] gi|145217127|gb|ABP46531.1| transcriptional regulator, GntR family [Mycobacterium gilvum PYR-GCK] Length = 242 Score = 41.5 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + ++A +S + + ++ L AG + + RGR GG L Sbjct: 45 GESLPPERELAARLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFLA 91 >gi|295835133|ref|ZP_06822066.1| DeoR family transcriptional regulator [Streptomyces sp. SPB74] gi|295825328|gb|EFG64193.1| DeoR family transcriptional regulator [Streptomyces sp. SPB74] Length = 325 Score = 41.5 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 M + + + +A +SE + + Q L AGI V + RGR GG L Sbjct: 1 MALLVQSSPGLTAAALARELEVSERTVIRDAQALRDAGIPVRSERGRAGGYHLA 54 >gi|332158836|ref|YP_004424115.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2] gi|331034299|gb|AEC52111.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2] Length = 316 Score = 41.5 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LTK +RVL+ A P + ++A +S+ L IL L + G++ + G+ Sbjct: 1 MTLTKAE---LRVLLAIA---SGPITLKELASKMNLSKSTLSIILHSLERKGLIN-IEGK 53 Query: 61 R 61 R Sbjct: 54 R 54 >gi|284041515|ref|YP_003391855.1| hypothetical protein Cwoe_0044 [Conexibacter woesei DSM 14684] gi|283945736|gb|ADB48480.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM 14684] Length = 318 Score = 41.5 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ + L+ + P ++AE +S + + ++ L +G+ + RG Sbjct: 1 MRASR-----LVTLVLL-LQARGPWTADELAERLEVSVRTVHRDVEALRASGVPIRGERG 54 Query: 60 RRGGVRL 66 GG RL Sbjct: 55 PAGGYRL 61 >gi|25028735|ref|NP_738789.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259507796|ref|ZP_05750696.1| ArsR family bacterial regulatory protein [Corynebacterium efficiens YS-314] gi|23494021|dbj|BAC18989.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259164589|gb|EEW49143.1| ArsR family bacterial regulatory protein [Corynebacterium efficiens YS-314] Length = 136 Score = 41.5 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 +R+ M A+H + P+ +S++ S+ + + L+ L AG+V RGR+ L +P Sbjct: 56 LRIQMLVALH-ERPHYVSELVALVGSSQPLVSQHLKVLKAAGLVHADRRGRQMSYSLAQP 114 >gi|251797655|ref|YP_003012386.1| MarR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545281|gb|ACT02300.1| transcriptional regulator, MarR family [Paenibacillus sp. JDR-2] Length = 303 Score = 41.5 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGG 63 R++ A + IA +S + ++ L +AG++ + R R GG Sbjct: 24 RIMELLA---EKEMNTKDIAGRMQLSPSIITMHIRKLEQAGLIGSRRVRRNGG 73 >gi|315444973|ref|YP_004077852.1| GntR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315263276|gb|ADU00018.1| transcriptional regulator, GntR family [Mycobacterium sp. Spyr1] Length = 242 Score = 41.5 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + ++A +S + + ++ L AG + + RGR GG L Sbjct: 45 GESLPPERELAARLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFLA 91 >gi|325282431|ref|YP_004254972.1| putative transcriptional regulator [Deinococcus proteolyticus MRP] gi|324314240|gb|ADY25355.1| putative transcriptional regulator [Deinococcus proteolyticus MRP] Length = 317 Score = 41.5 bits (97), Expect = 0.045, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +RVL + ++++ +S + + + L GI VE RG G RL Sbjct: 6 SLRVLTVLELLQAREEVTGAELSRRLEVSPRTVQRYIMKLQDLGIPVEGRRGVGGAYRL 64 >gi|182438070|ref|YP_001825789.1| DeoR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466586|dbj|BAG21106.1| putative DeoR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 387 Score = 41.1 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++AE +S + + + L G VE RG GG RL P Sbjct: 32 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGTAMPP 78 >gi|322421254|ref|YP_004200477.1| ribonuclease BN [Geobacter sp. M18] gi|320127641|gb|ADW15201.1| ribonuclease BN [Geobacter sp. M18] Length = 447 Score = 41.1 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 12/103 (11%) Query: 30 IAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +A I + L+ L G IV+ GR G R +Q++I DV+ + Sbjct: 339 LAFKLGIPLRIVKSTLEHLRDQGFIVQAGEGR-GSYYPARDLNQVSIADVLLSLRRRGAS 397 Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 A + + +L+ + A D L ++ L Sbjct: 398 AAIAGEEQAE----------EILKSSEQALTDALGGVTLRDLA 430 >gi|117927555|ref|YP_872106.1| MarR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648018|gb|ABK52120.1| transcriptional regulator, MarR family [Acidothermus cellulolyticus 11B] Length = 171 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 LT + L D P ++A C + E + +I+ LV+AG V Sbjct: 52 QLTHAGLLALHAL------RDGPLSQRELAARCSVEEQTMSRIVAKLVRAGYVT 99 >gi|332671145|ref|YP_004454153.1| ArsR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340183|gb|AEE46766.1| transcriptional regulator, ArsR family [Cellulomonas fimi ATCC 484] Length = 198 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69 I+ L + ++ +S++ A + L + L L +AG+V + R RL RP Sbjct: 51 IQALEVLSAAPEHAAPVSELLAATGVEASVLSQHLAVLKRAGVVTSTRSGNAVVYRLGRP 110 >gi|260598358|ref|YP_003210929.1| hypothetical protein CTU_25660 [Cronobacter turicensis z3032] gi|260217535|emb|CBA31735.1| unknown protein [Cronobacter turicensis z3032] Length = 208 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGR 60 I +S+ ++ K++Q L K G +E RGR Sbjct: 167 ITSTTNLSKSYVMKVIQELRKGGYIEIQRGR 197 >gi|291009862|ref|ZP_06567835.1| GntR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 248 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++A +S + L + ++ L ++G VE+ RGR GG Sbjct: 45 APGERLPAERELATRLGVSRVTLREAIRALQESGYVESRRGRYGG 89 >gi|320010629|gb|ADW05479.1| transcriptional regulator, IclR family [Streptomyces flavogriseus ATCC 33331] Length = 252 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y +RVL + H D ++I+ + L +L L + G VE Sbjct: 16 YALRVLESVSTHGDG-VTAARISRETGLPTGHLAPLLLTLRREGYVE 61 >gi|212702255|ref|ZP_03310383.1| hypothetical protein DESPIG_00266 [Desulfovibrio piger ATCC 29098] gi|212674318|gb|EEB34801.1| hypothetical protein DESPIG_00266 [Desulfovibrio piger ATCC 29098] Length = 1045 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%) Query: 9 YGIRVLMYC-AIHNDYPNRISQIAEACCISELF---LFKILQPLVKAGIVETVRGRRGGV 64 Y + L A ++ + IA + E F L ++L+ L + G++ R G Sbjct: 957 YALEALTDLGAFPDEGFHTARDIAARIGLPERFDQLLPRLLENLAEQGLLA--RDAAGSY 1014 Query: 65 RLCRPAD 71 RPA Sbjct: 1015 --GRPAA 1019 >gi|182434384|ref|YP_001822103.1| hypothetical protein SGR_591 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462900|dbj|BAG17420.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 550 Score = 41.1 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 +R+L+ A D + +AEA + + + + LVK G+V + Sbjct: 26 ALRLLLPIASAMDGRRTVGDLAEATDLPYEAVAQAVALLVKQGLVLS 72 >gi|154496223|ref|ZP_02034919.1| hypothetical protein BACCAP_00508 [Bacteroides capillosus ATCC 29799] gi|150274306|gb|EDN01383.1| hypothetical protein BACCAP_00508 [Bacteroides capillosus ATCC 29799] Length = 341 Score = 41.1 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 7/89 (7%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 ++ + P ++ +S ++K ++ L + G V + G RL D + Sbjct: 17 VLALLKQGEGPLSGEAMSRRLGVSRAAVWKAVENLRQEGYVISSA-TNRGYRLEESPDLL 75 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLV 102 + ++ A + C ++ C Sbjct: 76 SAGELSGALDG------CLVGRELLCLRT 98 >gi|331265757|ref|YP_004325387.1| comserved hypothetical protein [Streptococcus oralis Uo5] gi|326682429|emb|CBZ00046.1| comserved hypothetical protein [Streptococcus oralis Uo5] Length = 308 Score = 41.1 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + ++ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|312865698|ref|ZP_07725922.1| HTH domain protein [Streptococcus downei F0415] gi|311098819|gb|EFQ57039.1| HTH domain protein [Streptococcus downei F0415] Length = 308 Score = 41.1 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + ++ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|307702443|ref|ZP_07639399.1| HTH domain protein [Streptococcus oralis ATCC 35037] gi|307624025|gb|EFO03006.1| HTH domain protein [Streptococcus oralis ATCC 35037] Length = 308 Score = 41.1 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + ++ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 9 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60 >gi|293364202|ref|ZP_06610928.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|291317048|gb|EFE57475.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 320 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + ++ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 21 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 72 >gi|156933539|ref|YP_001437455.1| hypothetical protein ESA_01359 [Cronobacter sakazakii ATCC BAA-894] gi|156531793|gb|ABU76619.1| hypothetical protein ESA_01359 [Cronobacter sakazakii ATCC BAA-894] Length = 208 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGR 60 I +S+ ++ K++Q L K G +E RGR Sbjct: 167 ITSTTNLSKSYVMKVIQELRKGGYIEIQRGR 197 >gi|315611757|ref|ZP_07886679.1| HTH domain protein [Streptococcus sanguinis ATCC 49296] gi|315316172|gb|EFU64202.1| HTH domain protein [Streptococcus sanguinis ATCC 49296] Length = 320 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + ++ N +IAE IS +++ + L AGI + + RG +GG Sbjct: 21 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 72 >gi|319646607|ref|ZP_08000836.1| hypothetical protein HMPREF1012_01873 [Bacillus sp. BT1B_CT2] gi|317391195|gb|EFV71993.1| hypothetical protein HMPREF1012_01873 [Bacillus sp. BT1B_CT2] Length = 320 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + ++AE +SE +++ ++ L AGI V RG GG L Sbjct: 9 ILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSL 61 >gi|257388774|ref|YP_003178547.1| hypothetical protein Hmuk_2734 [Halomicrobium mukohataei DSM 12286] gi|257171081|gb|ACV48840.1| Protein of unknown function DUF293 [Halomicrobium mukohataei DSM 12286] Length = 177 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 L+ ++ + IAE + + +Q L +VE V G +GG + Sbjct: 17 LVNLYKESESAVKGEDIAEKVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68 >gi|150401330|ref|YP_001325096.1| hypothetical protein Maeo_0903 [Methanococcus aeolicus Nankai-3] gi|150014033|gb|ABR56484.1| conserved hypothetical protein [Methanococcus aeolicus Nankai-3] Length = 148 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 IA+ + + + ++ L G++ T +GR GG L + Sbjct: 19 TTKDIAQQLNLHPKNVDRYIRVLRDLGLLTTKKGRSGGAYLTKE 62 >gi|326774896|ref|ZP_08234161.1| hypothetical protein SACT1_0686 [Streptomyces cf. griseus XylebKG-1] gi|326655229|gb|EGE40075.1| hypothetical protein SACT1_0686 [Streptomyces cf. griseus XylebKG-1] Length = 551 Score = 41.1 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 +R+L+ A D + +AEA + + + + LVK G+V + Sbjct: 45 ALRLLLPIASAMDGRRTVGDLAEATDLPYEAVAQAVALLVKQGLVLS 91 >gi|116671574|ref|YP_832507.1| ArsR family transcriptional regulator [Arthrobacter sp. FB24] gi|116611683|gb|ABK04407.1| transcriptional regulator, ArsR family [Arthrobacter sp. FB24] Length = 125 Score = 41.1 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69 IR+L A D +S + + L + L L + +V +VR RL P Sbjct: 26 IRILELLAAAPDTTAPVSFLLAETGLEASHLSQHLATLRRHKVVTSVRSANAVTYRLAHP 85 >gi|52079599|ref|YP_078390.1| DNA-binding protein [Bacillus licheniformis ATCC 14580] gi|52784963|ref|YP_090792.1| hypothetical protein BLi01191 [Bacillus licheniformis ATCC 14580] gi|52002810|gb|AAU22752.1| hypothetical DNA-binding protein [Bacillus licheniformis ATCC 14580] gi|52347465|gb|AAU40099.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 320 Score = 41.1 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + ++AE +SE +++ ++ L AGI V RG GG L Sbjct: 9 ILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSL 61 >gi|229818707|ref|YP_002880233.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] gi|229564620|gb|ACQ78471.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] Length = 318 Score = 41.1 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLC 67 + +L Y H ++ +++ +S L + + L + G V ++ RG GG RL Sbjct: 9 LALLGYLQTHREW--SGAELCRRLEVSPRTLRRDVDDLRELGYVIDSSRGIGGGYRLG 64 >gi|254500949|ref|ZP_05113100.1| HTH domain family [Labrenzia alexandrii DFL-11] gi|222437020|gb|EEE43699.1| HTH domain family [Labrenzia alexandrii DFL-11] Length = 252 Score = 41.1 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 3 LTKRTDYGIR-VLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ + IR ++ A+ + ++A+ +S + + ++ L ++ + RG Sbjct: 20 LSTQIANAIRKAILDGALSVEERLPSETELADRFGVSRATVREAMKRLAAQNLIRSERGA 79 Query: 61 RGG 63 GG Sbjct: 80 SGG 82 >gi|229823098|ref|ZP_04449167.1| hypothetical protein GCWU000282_00393 [Catonella morbi ATCC 51271] gi|229787264|gb|EEP23378.1| hypothetical protein GCWU000282_00393 [Catonella morbi ATCC 51271] Length = 350 Score = 41.1 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R++ A H + R +AE +SE L ++ L G+V+ ++ G+RL Sbjct: 24 LRIMKTLAQHPERIGR-KTLAEEVALSERSLRTLMDSLRSQGLVDV---KQSGIRLTP-- 77 Query: 71 DQITILDVVKATEESFF 87 I + DV++A E++ Sbjct: 78 --IGL-DVLEAMEQALD 91 >gi|315427936|dbj|BAJ49527.1| transcriptional regulator, TrmB-like [Candidatus Caldiarchaeum subterraneum] Length = 263 Score = 41.1 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 TDY +R Y A+ P S+I++ I ++++L L + G +ET GR Sbjct: 23 TDYEVRA--YIALVEHGPMTASEISDLKMIPYSKIYEVLGSLEEKGFIETQSGR 74 >gi|134101853|ref|YP_001107514.1| GntR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914476|emb|CAM04589.1| GntR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 240 Score = 41.1 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++A +S + L + ++ L ++G VE+ RGR GG Sbjct: 37 APGERLPAERELATRLGVSRVTLREAIRALQESGYVESRRGRYGG 81 >gi|21223054|ref|NP_628833.1| DeoR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289769739|ref|ZP_06529117.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] gi|7288069|emb|CAB81864.1| putative deoR-family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289699938|gb|EFD67367.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] Length = 339 Score = 41.1 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 L+ +R++ A+ + ++AE ++E + + + L + G V++ G Sbjct: 8 LSTSARL-LRLVSLLAVRPAW--TCGELAERMEVTERTVRRDVARLRELGYTVDSDPGPW 64 Query: 62 GGVRL 66 GG RL Sbjct: 65 GGYRL 69 >gi|297619903|ref|YP_003708008.1| putative signal transduction protein [Methanococcus voltae A3] gi|297378880|gb|ADI37035.1| putative signal transduction protein with CBS domains [Methanococcus voltae A3] Length = 300 Score = 41.1 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + + ++IA+ + + +Q L G+V+ V G +GG Sbjct: 14 LILIYKQKNKAVKGTEIAKNLSRNPGTIRNQMQALRALGLVDGVPGPKGGY 64 >gi|118469703|ref|YP_886936.1| GntR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118170990|gb|ABK71886.1| GntR-family protein transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 244 Score = 41.1 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + ++A +S + + ++ L AG + + RGR GG L Sbjct: 46 GESLPPERELATRLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFLA 92 >gi|253576977|ref|ZP_04854300.1| ArsR family transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843587|gb|EES71612.1| ArsR family transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 302 Score = 41.1 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 11/103 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RGRRGG---VR 65 + +L A + P I ++A A +S + ++ L + G+V T G+ G Sbjct: 22 LHILRLLA---NRPMNIKELAAAVGLSSAIMTMHVRKLSECGLVATHMAPGKSGLQKICS 78 Query: 66 LCRPADQITI-LDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 L +I A E + E H D + +CG+ Sbjct: 79 LAVSGAEIQFPAQ--AAAERKSYRVEIPVGHYSDFHIEPTCGI 119 >gi|218665722|ref|YP_002426669.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517935|gb|ACK78521.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 238 Score = 41.1 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 17/82 (20%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIA-----EACCISELFLFKILQPLVK------ 50 L++R R L Y A+H D +IA I E + + L K Sbjct: 154 RLSRRL---FRFLHYLALHPDRTFSSREIANVLTDGRSLIQENSVAAQVHRLRKCLEKAG 210 Query: 51 -AGIVETVRGRRGGVRLCRPAD 71 A +ETV G G RL P Sbjct: 211 AAEWLETVHGF--GYRLSLPPK 230 >gi|82701586|ref|YP_411152.1| ribonuclease BN, putative [Nitrosospira multiformis ATCC 25196] gi|123545059|sp|Q2YBW1|Y452_NITMU RecName: Full=UPF0761 membrane protein Nmul_A0452 gi|82409651|gb|ABB73760.1| tRNA-processing RNAse BN [Nitrosospira multiformis ATCC 25196] Length = 426 Score = 41.1 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 10 GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +R+L A+ + + +S + +IL+ +VKA V V+ GG Sbjct: 301 ALRLLGILGEALKAGKVETALSLQQQLMLSPEEVERILELMVKANFVRQVQ--EGGWVQI 358 Query: 68 RPADQITILDVVKAT 82 +I I DV + Sbjct: 359 LDPAEIRIADVYRLF 373 >gi|303243947|ref|ZP_07330286.1| Helix-turn-helix type 11 domain protein [Methanothermococcus okinawensis IH1] gi|302485599|gb|EFL48524.1| Helix-turn-helix type 11 domain protein [Methanothermococcus okinawensis IH1] Length = 144 Score = 41.1 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + IAE + + + ++ L G+V T +G+ GGV L Sbjct: 18 STTKDIAEHLNLHPKNVDRYIRVLRDLGLVITKKGKNGGVFLTEEGR 64 >gi|223940104|ref|ZP_03631967.1| ribonuclease BN [bacterium Ellin514] gi|223891206|gb|EEF57704.1| ribonuclease BN [bacterium Ellin514] Length = 548 Score = 41.1 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 10 GIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +R++ A P + ++A + + +I+Q LV + + VE V G+ G Sbjct: 408 ALRLIQCVAERFQKGQLPPTVPEMAARLIVPTRMVQQIMQTLVSSHLVVEVVLGKEIGFA 467 Query: 66 LCRPADQITILDVVKAT 82 RP D +T D++ A Sbjct: 468 AARPLDSMTCHDILLAL 484 >gi|222080140|ref|YP_002540003.1| transcriptional regulator ArsR family [Agrobacterium vitis S4] gi|221738785|gb|ACM39564.1| transcriptional regulator ArsR family [Agrobacterium vitis S4] Length = 106 Score = 41.1 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L+ A + + ++E +S+ L + L L +AG+V T R +C+ + Sbjct: 31 ILIILA---EREVSVGPLSELVGLSQSALSQHLAKLRQAGLVSTRREAHTVYYICKSSAV 87 Query: 73 ITILDVV 79 + IL ++ Sbjct: 88 LRILAIL 94 >gi|296118135|ref|ZP_06836716.1| transcriptional regulator, ArsR family [Corynebacterium ammoniagenes DSM 20306] gi|295968693|gb|EFG81937.1| transcriptional regulator, ArsR family [Corynebacterium ammoniagenes DSM 20306] Length = 115 Score = 41.1 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGR 60 +++L A P ++ I E+ +S+ + L+ L +AG++E + +GR Sbjct: 44 LQILSQLATKGCGPATVNDITESVGLSQPTVSHHLRKLTEAGLLERSQQGR 94 >gi|20094461|ref|NP_614308.1| transcription regulator [Methanopyrus kandleri AV19] gi|19887554|gb|AAM02238.1| Predicted transcriptional regulator of amino acid metabolism consisting of an ACT domain and a DNA-binding HTH domain [Methanopyrus kandleri AV19] Length = 171 Score = 41.1 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 R ++ ++N +S+I+ + L + ++ L G+VET GR GGV + A Sbjct: 20 RDILELVVNNSG-ITVSEISRRLGLHRSTLDRYVKILKDLGLVETKPGRGGGVYPTKDA 77 >gi|226349496|ref|YP_002776610.1| putative ArsR family transcriptional regulator [Rhodococcus opacus B4] gi|226245411|dbj|BAH55758.1| putative ArsR family transcriptional regulator [Rhodococcus opacus B4] Length = 109 Score = 41.1 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 22/109 (20%) Query: 3 LTKRTDYGI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L++ Y + R+L+ YP S++A+ +S L L L G+V Sbjct: 10 LSRFG-YALSDATRTRILLSLKGQPGYP---SELADQIGVSRQILSNHLACLRGCGLVVA 65 Query: 57 V-RGRRGGVRLCRPADQI-----TILDVVKATEESFFVAECFASHKIDC 99 V GRR L P +I +LD+V A + + C + C Sbjct: 66 VPEGRRTRYELADP--RIGHALGDLLDLVLAVDPAL----CPDADDSGC 108 >gi|253573285|ref|ZP_04850628.1| DeoR-family protein transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846813|gb|EES74818.1| DeoR-family protein transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 325 Score = 41.1 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 20/100 (20%) Query: 1 MHLT-------KRTDYGIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 M LT KR D R++ + A+ P +A+ +S+ + + +Q L + G Sbjct: 1 MMLTGGEPNAMKRMD---RMMAIVMALQQ-RPETAQSLADKLEVSKRTVLRDMQALAEIG 56 Query: 53 I-VETVRGRRGGVRLCR----PADQITILD---VVKATEE 84 I + + G GG RL P Q+ + V+ A + Sbjct: 57 IPLVALPGPGGGYRLMDGFRLPPLQLDAGEALTVLLALDG 96 >gi|242309657|ref|ZP_04808812.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523658|gb|EEQ63524.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 199 Score = 41.1 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 QIA+ S L +IL+ L AG ++T +G+ Sbjct: 158 QKLTQRQIAQKLNTSPESLSRILKELKNAGFIKTQKGK 195 >gi|297560956|ref|YP_003679930.1| hypothetical protein Ndas_1998 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845404|gb|ADH67424.1| Helix-turn-helix type 11 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 334 Score = 41.1 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + R + L+ + +A+ +S + + + L + G + T +G Sbjct: 3 MKTSAR----LLALLSI-LQTRRDWSGQDLADRLDVSARTVRRDVDRLRELGYPITTFKG 57 Query: 60 RRGGVRL 66 GG RL Sbjct: 58 PDGGYRL 64 >gi|120401622|ref|YP_951451.1| GntR domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119954440|gb|ABM11445.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii PYR-1] Length = 245 Score = 41.1 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 D +++E +S + + L + G++ RGR GG + P Sbjct: 35 RPGDRLPTERELSEMLDVSRTTVRTAVAVLERDGLIAVRRGRGGGFTVQAPPVD 88 >gi|331698669|ref|YP_004334908.1| GntR domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953358|gb|AEA27055.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190] Length = 255 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 11 IRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +R L++ D +AE I+ L L + L+ L G VE RG RGG Sbjct: 21 LRRLIHLGEVGPGDRLPAERDLAEQLGIARLSLREALKTLQNDGYVEVRRGARGG 75 >gi|260904320|ref|ZP_05912642.1| DeoR family transcriptional regulator [Brevibacterium linens BL2] Length = 318 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +AE +S + + L G VE RG GG RL Sbjct: 7 SGTDLAERLNVSSRTVRNDIGTLRDLGYPVEGTRGGEGGYRLG 49 >gi|256785847|ref|ZP_05524278.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] Length = 333 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 L+ +R++ A+ + ++AE ++E + + + L + G V++ G Sbjct: 2 LSTSARL-LRLVSLLAVRPAW--TCGELAERMEVTERTVRRDVARLRELGYTVDSDPGPW 58 Query: 62 GGVRL 66 GG RL Sbjct: 59 GGYRL 63 >gi|227513905|ref|ZP_03943954.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] gi|227087712|gb|EEI23024.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] Length = 105 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 45 LQPLVKAGIVETVRGRRGGV-RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103 + L A I+ + R R DQIT+LDV +AT C + Sbjct: 2 IAQLRAADILAARQNNR--YDNFARDLDQITVLDVYRATAPKNPFLVPDQETSGQCSVGV 59 Query: 104 SCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133 + +T + L Q +++ LV Sbjct: 60 AFPEVITKHFAEVQVGIEQRLDQITVQQLVDE 91 >gi|302538209|ref|ZP_07290551.1| DeoR family transcriptional regulator [Streptomyces sp. C] gi|302447104|gb|EFL18920.1| DeoR family transcriptional regulator [Streptomyces sp. C] Length = 325 Score = 40.7 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +R+L ++P +A+ ++ + + + L + G V++ RG GG RL Sbjct: 20 LRLLSLLQTRREWPGT--DLADRLEVTVRTVRRDIDRLRQLGYPVDSTRGHAGGYRLG 75 >gi|239988466|ref|ZP_04709130.1| DeoR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 360 Score = 40.7 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++AE +S + + + L G VE RG GG RL P Sbjct: 32 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSIGGYRLVAGAAMPP 78 >gi|86157125|ref|YP_463910.1| ribonuclease BN [Anaeromyxobacter dehalogenans 2CP-C] gi|85773636|gb|ABC80473.1| tRNA-processing RNAse BN [Anaeromyxobacter dehalogenans 2CP-C] Length = 429 Score = 40.7 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 17/128 (13%) Query: 12 RVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 R L+ A D +A + + L L GIV ++ GG+ R Sbjct: 290 RTLLLVAQAFDRGEDAPDPGDVAARLGATPEEASEALAVLRLRGIVVSL--ADGGLVPAR 347 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 P ++IT+LDV +A L+ +L L + Sbjct: 348 PLEKITLLDVRRAVSGREA------------RPDERGILSEILMDLEAKAAGQLDAVTFR 395 Query: 129 CLVRNRSS 136 L + Sbjct: 396 ELCDRERA 403 >gi|88800150|ref|ZP_01115719.1| putative transcriptional regulator [Reinekea sp. MED297] gi|88777131|gb|EAR08337.1| putative transcriptional regulator [Reinekea sp. MED297] Length = 244 Score = 40.7 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ + + E +S+ L + L L G +++ RGR GG+RL Sbjct: 22 SEGYWTTADLREQLEVSQRTLMRELAELKSMGYPIDSDRGRGGGIRLN 69 >gi|239942001|ref|ZP_04693938.1| DeoR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291445450|ref|ZP_06584840.1| DeoR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348397|gb|EFE75301.1| DeoR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 353 Score = 40.7 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++AE +S + + + L G VE RG GG RL P Sbjct: 25 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSIGGYRLVAGAAMPP 71 >gi|297160986|gb|ADI10698.1| helix-turn-helix type 11 domain-containing protein [Streptomyces bingchenggensis BCW-1] Length = 329 Score = 40.7 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L+ + ++ +A+ + E + + + L+ + V +VRGR GG RL Sbjct: 8 VLALLEI-LQTGGTRTVADLADRLGVDERTVRRYIDHLIDLDVPVRSVRGRYGGYRLA 64 >gi|290579960|ref|YP_003484352.1| hypothetical protein SmuNN2025_0434 [Streptococcus mutans NN2025] gi|254996859|dbj|BAH87460.1| hypothetical protein [Streptococcus mutans NN2025] Length = 307 Score = 40.7 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 12 RVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L ++ +D ++AE +S+ +++ L+ L +AGI + + GR GG L + Sbjct: 5 RLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGFSLMKN 64 >gi|229492641|ref|ZP_04386444.1| transcriptional regulator, GntR family [Rhodococcus erythropolis SK121] gi|229320627|gb|EEN86445.1| transcriptional regulator, GntR family [Rhodococcus erythropolis SK121] gi|309949444|dbj|BAJ23154.1| GntR family transcriptional regulator [Rhodococcus erythropolis] Length = 307 Score = 40.7 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++AE +S L ++L L +AG+V GR GG Sbjct: 75 GSRLGSERELAEHYGVSRSSLRQVLAALEEAGVVRRAIGRSGG 117 >gi|292669455|ref|ZP_06602881.1| two component system response regulator [Selenomonas noxia ATCC 43541] gi|292648908|gb|EFF66880.1| two component system response regulator [Selenomonas noxia ATCC 43541] Length = 255 Score = 40.7 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 Y +R + + H P ++AEA +S +L K+ Sbjct: 153 YLLRAMRHMEEHMAEPITAREVAEALGLSVSYLHKLFAR 191 >gi|84687655|ref|ZP_01015529.1| transcriptional regulator, putative pyruvate dehydrogenase complex repressor [Maritimibacter alkaliphilus HTCC2654] gi|84664332|gb|EAQ10822.1| transcriptional regulator, putative pyruvate dehydrogenase complex repressor [Rhodobacterales bacterium HTCC2654] Length = 264 Score = 40.7 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 D ++A+ +S + + L+ L AG+V T +G GG Sbjct: 62 GDKLPPERELAKQLDVSRNVVREALRILENAGLVVTRKGAYGG 104 >gi|307352870|ref|YP_003893921.1| putative signal transduction protein with CBS domains [Methanoplanus petrolearius DSM 11571] gi|307156103|gb|ADN35483.1| putative signal transduction protein with CBS domains [Methanoplanus petrolearius DSM 11571] Length = 292 Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L+ + +IAE + + +Q L G+VE V G +GG A Sbjct: 11 LITLITLYHRKSVAIKGEEIAELLKRNPGTVRNQMQALKALGLVEGVPGPKGGYTPSSSA 70 Query: 71 -DQITILD 77 +++ +LD Sbjct: 71 YNELNLLD 78 >gi|87122807|ref|ZP_01078679.1| probable deoR-family transcriptional regulator [Marinomonas sp. MED121] gi|86161913|gb|EAQ63206.1| probable deoR-family transcriptional regulator [Marinomonas sp. MED121] Length = 243 Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 I + ++ IAE +S + + +Q L G+ ++ RGR GGVRL Sbjct: 20 IKSGDAMTVALIAEEFNVSPRTISRDIQILRDQGLPIDADRGRGGGVRL 68 >gi|302867546|ref|YP_003836183.1| DeoR family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315506054|ref|YP_004084941.1| deor family transcriptional regulator [Micromonospora sp. L5] gi|302570405|gb|ADL46607.1| DeoR family transcriptional regulator [Micromonospora aurantiaca ATCC 27029] gi|315412673|gb|ADU10790.1| DeoR family transcriptional regulator [Micromonospora sp. L5] Length = 334 Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D+P + +AE +S + + + L + G +E+ +G GG RL Sbjct: 20 ARRDWPGSL--LAERLRVSPRTVRRDVDRLRELGYPIESAKGPDGGYRLG 67 >gi|323341594|ref|ZP_08081827.1| HTH domain protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464019|gb|EFY09212.1| HTH domain protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 308 Score = 40.7 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGR 60 L+ + +L + + +S++A+ ISE + ++ L G + TV G Sbjct: 3 KLSN----ALVMLDVLSARS--VVPLSELADLLEISERGVQRLKGELESVGYEITTVMGP 56 Query: 61 RGGVRL 66 GG L Sbjct: 57 GGGYVL 62 >gi|163841865|ref|YP_001626270.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162955341|gb|ABY24856.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 313 Score = 40.7 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +AE +S L + ++ L + G VE RG GG +L Sbjct: 15 DLAEKLEVSLRTLRRDVERLRELGYPVEARRGTDGGYQLA 54 >gi|332299135|ref|YP_004441057.1| biotin/acetyl-CoA-carboxylase ligase [Treponema brennaborense DSM 12168] gi|332182238|gb|AEE17926.1| biotin/acetyl-CoA-carboxylase ligase [Treponema brennaborense DSM 12168] Length = 390 Score = 40.7 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L + +AE C +S ++K + L G V G G RL R + Sbjct: 6 RILSILREADGAVVSGEDLAERCGVSRTAVWKAVSALRSDGYVL-EAGTNRGYRLVREGE 64 >gi|283476992|emb|CAY72884.1| putative negative regulator [Erwinia pyrifoliae DSM 12163] gi|310765326|gb|ADP10276.1| putative negative regulator [Erwinia sp. Ejp617] Length = 83 Score = 40.7 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 16/43 (37%) Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 C + +C + + F L +Y++ V + + I Sbjct: 32 CHITPACRRKTARHDRVQRFLHELDRYTLAERVEDNHPLYPIL 74 >gi|296108946|ref|YP_003615895.1| putative signal transduction protein with CBS domains [Methanocaldococcus infernus ME] gi|295433760|gb|ADG12931.1| putative signal transduction protein with CBS domains [Methanocaldococcus infernus ME] Length = 293 Score = 40.7 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + P + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LINLYREKNRPIKGTEIALRLKRNPGTIRNQMQALRALDLVDGVPGPKGGY 64 >gi|219850739|ref|YP_002465171.1| signal transduction protein with CBS domains [Methanosphaerula palustris E1-9c] gi|219544998|gb|ACL15448.1| putative signal transduction protein with CBS domains [Methanosphaerula palustris E1-9c] Length = 292 Score = 40.7 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LCRP 69 + L+ + +P + +IAE + + +Q L +V+ V G +GG R Sbjct: 11 LITLITLYHQHSHPIKGEEIAEVIKRNPGTIRNQMQALKALELVDGVPGPKGGYNPTARA 70 Query: 70 ADQ--ITILD 77 + I++ D Sbjct: 71 YKELSISVAD 80 >gi|325969941|ref|YP_004246132.1| GntR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324025179|gb|ADY11938.1| transcriptional regulator, GntR family [Spirochaeta sp. Buddy] Length = 225 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Query: 5 KRTDYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++Y +RVL + + ++IA IS + + L L + GIVE Sbjct: 11 TASEYALRVLKENIISLDLAPGSMVSENEIAAQLGISRTPVREALIELSRVGIVE 65 >gi|256372101|ref|YP_003109925.1| GntR family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256008685|gb|ACU54252.1| GntR domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 264 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R+L A+ D ++ +S L + + L G++ET RGR GG Sbjct: 37 RILAAIAVGILYPGDRLPPERELTSRLGVSRATLREAIGRLAAFGVLETRRGRGGG 92 >gi|114319682|ref|YP_741365.1| putative ribonuclease BN [Alkalilimnicola ehrlichii MLHE-1] gi|122312407|sp|Q0ABB2|Y521_ALHEH RecName: Full=UPF0761 membrane protein Mlg_0521 gi|114226076|gb|ABI55875.1| tRNA-processing RNAse BN [Alkalilimnicola ehrlichii MLHE-1] Length = 445 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 10/137 (7%) Query: 7 TDYGIRVLMYC--AIHNDYPNRISQIAEACCISELF-LFKILQPLVKAGIVETVRGRRGG 63 +RVL + A ++ + + ++L+PL +A ++ + G G Sbjct: 305 FRLAVRVLGHLWRAQREGRGLSTRALSRLEPAAGEMGVLQVLRPLRRARAIQ-LNG-EGE 362 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 L R T+LD+ ++ D L L +A L Sbjct: 363 WMLARDPSHYTLLDLYRSEAFPLPSVAALRKDGDDWDQ----RLADSLAQADTGLASGLA 418 Query: 124 QYSIECLVRNRSSIKKI 140 + S++ + +R I+ + Sbjct: 419 E-SLDDIFTSRPQIRPV 434 >gi|325958233|ref|YP_004289699.1| phosphate uptake regulator PhoU [Methanobacterium sp. AL-21] gi|325329665|gb|ADZ08727.1| phosphate uptake regulator, PhoU [Methanobacterium sp. AL-21] Length = 299 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 KR+D ++ ++ +H D P +IAE ++ ++ K+LQP+VK G+V Sbjct: 2 KRSDSTLKAILDVILH-DNPATQDEIAEKLGLTRRYVTKLLQPMVKRGVVR 51 >gi|134103756|ref|YP_001109417.1| DeoR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916379|emb|CAM06492.1| DeoR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 321 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + + L G VE G GG RL P Sbjct: 31 SELAERLGVSPRTIRRDVDRLRDLGYPVEATMGAAGGYRLVAGSAMPP 78 >gi|118472327|ref|YP_890339.1| IclR-family protein transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173614|gb|ABK74510.1| IclR-family protein transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 266 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 5 KRTDYGIRV---LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ +R L Y A D P RI +I A + +L+ LV G V + Sbjct: 10 RKVKSAVRTVELLEYLAARPDRPTRIREICAALDMPRSSAHALLRTLVAQGWVRS 64 >gi|311744614|ref|ZP_07718413.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312097|gb|EFQ82015.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 120 Score = 40.7 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR------RGG 63 + VL + D P +S++ E + + L L AG+V+ R GR RGG Sbjct: 40 LHVLWHL---TDGPATVSELVERTGAPRTGVSQHLAKLRHAGLVDVTRSGRFQHYALRGG 96 Query: 64 V--RLCRP 69 RL R Sbjct: 97 HVARLVRE 104 >gi|238619789|ref|YP_002914615.1| transcriptional regulator, TrmB [Sulfolobus islandicus M.16.4] gi|238380859|gb|ACR41947.1| transcriptional regulator, TrmB [Sulfolobus islandicus M.16.4] Length = 662 Score = 40.7 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPADQI-- 73 A+ +D + S++A+ +S+ + +L+ L + G+VE + G+ L QI Sbjct: 495 ALPDDKGLKSSEVADKLRVSKQYAINVLKNLERKGLVEADKEDGKTFAWYLTPLGRQIKD 554 Query: 74 ---TILDVVKA 81 + DV++ Sbjct: 555 LVNNVGDVIEV 565 >gi|291007718|ref|ZP_06565691.1| DeoR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 318 Score = 40.7 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + + L G VE G GG RL P Sbjct: 28 SELAERLGVSPRTIRRDVDRLRDLGYPVEATMGAAGGYRLVAGSAMPP 75 >gi|118473134|ref|YP_888256.1| TonB-dependent receptor [Mycobacterium smegmatis str. MC2 155] gi|118174421|gb|ABK75317.1| TonB-dependent receptor [Mycobacterium smegmatis str. MC2 155] Length = 224 Score = 40.7 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68 L+ + P ++IAE +S+ + + +Q L AG+ + G GG + R Sbjct: 3 ALVDLLRGSRKPLSAARIAEEFGVSKRTIERDIQSLQLAGVPIYADHGVSGGYSILREHS 62 Query: 69 -PADQITI 75 P +T+ Sbjct: 63 LPPLNLTV 70 >gi|312198510|ref|YP_004018571.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311229846|gb|ADP82701.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length = 267 Score = 40.7 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +A + +S L + L L + G+V VRGR GG Sbjct: 46 RPGERLGGERDLAASLGVSRETLRQALTSLEREGVVLRVRGRGGG 90 >gi|320009536|gb|ADW04386.1| regulatory protein DeoR [Streptomyces flavogriseus ATCC 33331] Length = 331 Score = 40.7 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + + ++++A+ + + + ++ L+ + VE+VRGR GG RL Sbjct: 7 RVLTLLELLQSGGTRTVAELADRLGVDGRTVRRYVEQLIDLDVPVESVRGRYGGYRLG 64 >gi|297193862|ref|ZP_06911260.1| DeoR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720223|gb|EDY64131.1| DeoR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 326 Score = 40.7 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + + L G VE +G GG RL P Sbjct: 31 SELAERLDVSPRTIRRDIDRLRDLGYPVEATKGAVGGYRLVAGAAMPP 78 >gi|266623352|ref|ZP_06116287.1| putative pectin degradation repressor protein KdgR [Clostridium hathewayi DSM 13479] gi|288864862|gb|EFC97160.1| putative pectin degradation repressor protein KdgR [Clostridium hathewayi DSM 13479] Length = 255 Score = 40.7 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +++++ A + +S IAEA +S + +ILQ L G V Sbjct: 15 ALQIILALAEQKGW-VNLSDIAEATGLSPSTVHRILQELQACGFV 58 >gi|297561944|ref|YP_003680918.1| IclR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846392|gb|ADH68412.1| transcriptional regulator, IclR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 253 Score = 40.7 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L + A P S IA + ++++L+ + + G V Sbjct: 10 ALRLLRFLATRPG-PVSASAIAAELGVPRSSVYQLLEAMAREGFVT 54 >gi|262202595|ref|YP_003273803.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085942|gb|ACY21910.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247] Length = 120 Score = 40.7 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R+L A H + I+ +S+ + L+ L +AG+V + R Sbjct: 35 LRLLSEVAAHPGGEACVCDISGPFELSQPTISHHLKVLRQAGLVTSERRA 84 >gi|254380959|ref|ZP_04996325.1| helix-turn-helix type 11 domain containing protein [Streptomyces sp. Mg1] gi|194339870|gb|EDX20836.1| helix-turn-helix type 11 domain containing protein [Streptomyces sp. Mg1] Length = 335 Score = 40.7 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 L+ + + ++++A + E + + L+ + VE+VRGR GG RL Sbjct: 4 LLEL-LQSGGLRTVAELAARLEVDERTVRRYADHLLDLDVPVESVRGRHGGYRLA 57 >gi|318062292|ref|ZP_07981013.1| transcriptional regulator [Streptomyces sp. SA3_actG] Length = 244 Score = 40.7 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPAD 71 + ++A +S L +++ L G+V+ RGR GG R Sbjct: 41 LVAPGERLPPERELAARLGVSRATLREVVSVLHTEGLVDFRRGRYGGTFVRAGARAPR 98 >gi|284043766|ref|YP_003394106.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947987|gb|ADB50731.1| GntR domain protein [Conexibacter woesei DSM 14684] Length = 247 Score = 40.7 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 37/124 (29%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI--- 73 D R +AE +S + + L +A IV+ RG+ GG +L I Sbjct: 39 LYAPGDMLPRERDLAERLGVSRTVVREAYAVLRRAAIVDVRRGQSGGTQLV-SLTNIPSV 97 Query: 74 -------------TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 ++L+V +A E + + V R+A AFF Sbjct: 98 LASVVGETRYELRSVLEVRRAVEPAAALI--------------------VARRADEAFFA 137 Query: 121 VLTQ 124 L Sbjct: 138 RLDG 141 >gi|84495411|ref|ZP_00994530.1| putative transcriptional regulator [Janibacter sp. HTCC2649] gi|84384904|gb|EAQ00784.1| putative transcriptional regulator [Janibacter sp. HTCC2649] Length = 322 Score = 40.7 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++A +S+ L + ++ L + G V + RG GG +L Sbjct: 25 ELASRLDVSDRTLRRDVERLRELGYPVTSSRGVEGGYQLG 64 >gi|170747859|ref|YP_001754119.1| Crp/FNR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654381|gb|ACB23436.1| transcriptional regulator, Crp/Fnr family [Methylobacterium radiotolerans JCM 2831] Length = 259 Score = 40.7 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Query: 17 CAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +Y + S++A+ +S + L ++L L +AG++E+ R Sbjct: 166 LGLEPEYRLPLAQSELADTAGLSNVHLSRVLSDLRRAGLIESGR 209 >gi|325673267|ref|ZP_08152959.1| ArsR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555857|gb|EGD25527.1| ArsR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 128 Score = 40.7 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 26/48 (54%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + I+ A +S+ + L+ L +AG++++ R Sbjct: 40 LRMLSLIAAHEGGESCVCDISPAFDLSQPTISHHLKVLREAGLLDSER 87 >gi|28631602|gb|AAO49781.1| Sep repressor SepR [Pseudomonas putida] Length = 260 Score = 40.7 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ H ++ IA+ + + +I+ L +VE + G GG RL Sbjct: 23 IMRALGSHPQG-LSLAAIAQVVDLPRSTVQRIINALGAEHLVEAL-GPSGGFRLG 75 >gi|294054988|ref|YP_003548646.1| hypothetical protein Caka_1457 [Coraliomargarita akajimensis DSM 45221] gi|293614321|gb|ADE54476.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM 45221] Length = 94 Score = 40.7 bits (95), Expect = 0.076, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR------RGGV 64 VL+ A + + P + ++A A I+E + +I+ L AG + R GR G + Sbjct: 15 HVLICLARNPEQP--LREVALAVGITERAVQRIVAELEVAGYLSHERIGRQNSYRIHGAL 72 Query: 65 RLCRPADQ-ITILDVVKAT 82 L P + TI D++ Sbjct: 73 ELRHPLEAHRTIGDLLDVV 91 >gi|257051948|ref|YP_003129781.1| putative transcriptional regulator [Halorhabdus utahensis DSM 12940] gi|256690711|gb|ACV11048.1| putative transcriptional regulator [Halorhabdus utahensis DSM 12940] Length = 205 Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 3/78 (3%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 + H P +A+ + K L+ L + G VET G GG R + + + Sbjct: 42 HVVAHAYSPVSADAVADDALTTPKTARKHLETLAEEGFVETSPGEHGGTLYRRSPESLVV 101 Query: 76 ---LDVVKATEESFFVAE 90 D+++ V Sbjct: 102 EQAADILEHVTTDELVTR 119 >gi|229823766|ref|ZP_04449835.1| hypothetical protein GCWU000282_01068 [Catonella morbi ATCC 51271] gi|229786805|gb|EEP22919.1| hypothetical protein GCWU000282_01068 [Catonella morbi ATCC 51271] Length = 160 Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 23/44 (52%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 RV+ Y H + P + ++AE IS+ ++ + + K +++ Sbjct: 46 RVVTYLFHHQERPVTMMEVAEKMKISKPVASQLFKRMEKNQLID 89 >gi|297160199|gb|ADI09911.1| DeoR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 314 Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 S++A+ +S + + + L + G VE G GG RL Sbjct: 17 SELADRLGVSPRTVRRDVDRLRELGYPVEASMGAAGGYRLA 57 >gi|291300515|ref|YP_003511793.1| helix-turn-helix type 11 domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290569735|gb|ADD42700.1| Helix-turn-helix type 11 domain protein [Stackebrandtia nassauensis DSM 44728] Length = 327 Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + N Q++ +S + + L +AGI V +GR GG RL Sbjct: 9 MVLLLQNRGSLTADQLSAELGVSPRTIARDATELAEAGIPVYAEQGRGGGYRL 61 >gi|32492525|gb|AAP85343.1| transcription repressor [Streptomyces griseoruber] Length = 348 Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE +S + + + L G ++++ G GG +L Sbjct: 24 AELAERLSVSPRTVRRDVDKLRALGYPIQSIGGVGGGYQLA 64 >gi|312137937|ref|YP_004005273.1| arsr family transcriptional regulator [Rhodococcus equi 103S] gi|311887276|emb|CBH46587.1| putative ArsR family transcriptional regulator [Rhodococcus equi 103S] Length = 128 Score = 40.3 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 26/48 (54%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + I+ A +S+ + L+ L +AG++++ R Sbjct: 40 LRMLSLIAAHEGGESCVCDISPAFDLSQPTISHHLKVLREAGLLDSER 87 >gi|319951528|ref|ZP_08025333.1| Helix-turn-helix type 11 domain protein [Dietzia cinnamea P4] gi|319434825|gb|EFV90140.1| Helix-turn-helix type 11 domain protein [Dietzia cinnamea P4] Length = 302 Score = 40.3 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 14/84 (16%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLC- 67 RVL+ A D ++ QIA+ I+E +I+ L +AG +E R R G RL Sbjct: 12 RVLLCIAR--DDQMQLPQIADEVGITERATRRIITELERAGYLE--RSRDGLTDRYRLNG 67 Query: 68 ------RPADQITILDVVKATEES 85 R + + +V+ E Sbjct: 68 KLPLRPRTDRDVAVGEVLDLLEHP 91 >gi|328882023|emb|CCA55262.1| putative transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 334 Score = 40.3 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 RVL + ++AE ++ + + ++ L G V G GG RL R Sbjct: 9 RVLTLLGLLQRRQVWTGPELAERLGVTARTVRRDVERLRALGYPVHAGMGVGGGYRLGR 67 >gi|218295838|ref|ZP_03496618.1| putative transcriptional regulator [Thermus aquaticus Y51MC23] gi|218243576|gb|EED10104.1| putative transcriptional regulator [Thermus aquaticus Y51MC23] Length = 449 Score = 40.3 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 L+ A + ++++A+A + E ++L + + G+V R GG RL R Sbjct: 337 LIALAHLKRVGEAGLAELAKALQLPEEAARRVLSRMERMGLV---RREGGGYRLAR 389 >gi|169628050|ref|YP_001701699.1| GntR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169240017|emb|CAM61045.1| Putative transcriptional regulator, GntR family [Mycobacterium abscessus] Length = 273 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R+L A ++AE +S + L PL +AGI+E GR GG Sbjct: 16 RILSMLAQGTLHPGSRLGSEREMAERFAVSRATVRSALVPLSRAGILERQTGRGGG 71 >gi|332652740|ref|ZP_08418485.1| two-component response regulator [Ruminococcaceae bacterium D16] gi|332517886|gb|EGJ47489.1| two-component response regulator [Ruminococcaceae bacterium D16] Length = 246 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 6 RTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQP 47 ++ Y ++ + Y H D P +++IA++ ISE L + Sbjct: 140 KSKYVLQAMSYIGEHYDNPNITVAEIAQSIGISEGHLSHTFKK 182 >gi|158423617|ref|YP_001524909.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330506|dbj|BAF87991.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 317 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 RVL+ + ++AE +S + K+L L ++E V+ RG L + Sbjct: 90 RVLLAGRLPGGTKLGEHRLAEIFDVSRERIRKVLHRLGHERLIEVVK-NRGAFTLAPDPN 148 Query: 72 QITI-LDVVKATEESF 86 +I + + + E Sbjct: 149 EIRVIFEARRILEGGI 164 >gi|55377645|ref|YP_135495.1| hypothetical protein rrnAC0802 [Haloarcula marismortui ATCC 43049] gi|55230370|gb|AAV45789.1| unknown [Haloarcula marismortui ATCC 43049] Length = 176 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 17/47 (36%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 IAE + + +Q L G+VE + G GG + Sbjct: 22 QQTGEAVTGETIAEEIDRNPGTVRNQMQSLTSLGLVEGIPGPTGGYK 68 >gi|148548079|ref|YP_001268181.1| regulatory protein IclR [Pseudomonas putida F1] gi|148512137|gb|ABQ78997.1| regulatory protein, IclR [Pseudomonas putida F1] gi|298682350|gb|ADI95411.1| TtgT [Pseudomonas putida] Length = 260 Score = 40.3 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ H ++ IA+ + + +I+ L +VE + G GG RL Sbjct: 23 IMRALGSHPQG-LSLAAIAQVVDLPRSTVQRIINALGAEHLVEAL-GPSGGFRLG 75 >gi|304386037|ref|ZP_07368378.1| transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304327960|gb|EFL95185.1| transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 300 Score = 40.3 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D P + ++AEA +S + K L L +A I+ + R Sbjct: 33 SDQPMSVQELAEALNLSSPIVTKHLNKLAEAEIIHSKR 70 >gi|270291503|ref|ZP_06197724.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|270280000|gb|EFA25837.1| transcriptional regulator [Pediococcus acidilactici 7_4] Length = 296 Score = 40.3 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D P + ++AEA +S + K L L +A I+ + R Sbjct: 29 SDQPMSVQELAEALNLSSPIVTKHLNKLAEAEIIHSKR 66 >gi|329937711|ref|ZP_08287230.1| DeoR family transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303110|gb|EGG46998.1| DeoR family transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 329 Score = 40.3 bits (94), Expect = 0.084, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++AE ++ + + + L + G V TV+G GG RL Sbjct: 28 ELAERLAVTPRTVRRDIGRLRELGYPVTTVKGPAGGYRLG 67 >gi|289767053|ref|ZP_06526431.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] gi|289697252|gb|EFD64681.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] Length = 354 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S L + + L + G V V+G GG RL Sbjct: 78 LAERLDVSARTLRRDVDRLRELGYPVRAVKGPDGGYRL 115 >gi|170741769|ref|YP_001770424.1| GntR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196043|gb|ACA17990.1| transcriptional regulator, GntR family [Methylobacterium sp. 4-46] Length = 246 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-- 69 R ++ A+ I + +S + L L G+VE R R G R+ RP Sbjct: 36 RAIIEQALKPGEKLPEDAIGASFGVSRTIVRNALHQLAAEGLVEMRRNR--GARVARPRW 93 Query: 70 --ADQITILDVVKATE 83 A I D+ +A E Sbjct: 94 EEAGDI--FDIRRALE 107 >gi|56459159|ref|YP_154440.1| DeoR family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56178169|gb|AAV80891.1| Transcriptional regulator, DeoR family [Idiomarina loihiensis L2TR] Length = 314 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ + + ++IAE + + + + + L + GI V T G GG L Sbjct: 8 VLALLEL-LQSHKRLSGTEIAEMLGVDKRTVRRYISALEELGIPVTTEHGPHGGYML 63 >gi|228950351|ref|ZP_04112518.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809309|gb|EEM55763.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 301 Score = 40.3 bits (94), Expect = 0.087, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 K + I ++Y H +S++A ++ L ++ Q Sbjct: 169 KFSRLAIEAMIYIGEHYIEEITVSEVANHLAVNRSHLSRVFQ 210 >gi|302390913|ref|YP_003826733.1| biotin/acetyl-CoA-carboxylase ligase [Acetohalobium arabaticum DSM 5501] gi|302202990|gb|ADL11668.1| biotin/acetyl-CoA-carboxylase ligase [Acetohalobium arabaticum DSM 5501] Length = 331 Score = 40.3 bits (94), Expect = 0.088, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRP 69 RVL + D ++++ +S ++K +Q L + G V + R G L + Sbjct: 10 RVLRILHKNRDQYISGQELSDRLEVSRTAVWKYIQSLREQGYVIDSSSRL---GYCLVKA 66 Query: 70 AD 71 D Sbjct: 67 PD 68 >gi|281354975|ref|ZP_06241469.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC BAA-548] gi|281317855|gb|EFB01875.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC BAA-548] Length = 208 Score = 40.3 bits (94), Expect = 0.088, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP- 69 +R ++ ++ Q+AE IS + + L+ L + G+VETV R G R+CRP Sbjct: 17 VRAVIDGSLAAGERLAEEQLAERFGISRTPVREALRRLNEEGLVETV--PRCGFRVCRPE 74 Query: 70 ADQI 73 +I Sbjct: 75 PAEI 78 >gi|320008004|gb|ADW02854.1| transcriptional regulator, IclR family [Streptomyces flavogriseus ATCC 33331] Length = 279 Score = 40.3 bits (94), Expect = 0.088, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L+ A D P R+ ++AE + ++++L+ LV G V T Sbjct: 35 ALLELLASRGDRPARLDELAEELGVPRSSMYQLLRTLVDCGWVRT 79 >gi|153003611|ref|YP_001377936.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5] gi|152027184|gb|ABS24952.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5] Length = 434 Score = 40.3 bits (94), Expect = 0.088, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 13 VLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ A + P +A S ++L L AG+V ++ GG+ RP Sbjct: 298 AMLQIARAFDRGEPPPDAGDVASRLGSSAEEAGEVLAALRNAGLVVSL--TDGGLVPSRP 355 Query: 70 ADQITILDVVKAT 82 ++T+LDV +A Sbjct: 356 LARLTLLDVRRAL 368 >gi|319950736|ref|ZP_08024631.1| helix-turn-helix, type 11 domain-containing protein [Dietzia cinnamea P4] gi|319435590|gb|EFV90815.1| helix-turn-helix, type 11 domain-containing protein [Dietzia cinnamea P4] Length = 332 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L+ + ++A ++ + + + L G VE+ RG GG RL Sbjct: 12 VLCLLDL-LQRRSVWTGEELAAELGVTTRSVRRDVDRLRDLGYPVESERGAGGGYRLG 68 >gi|315630414|ref|YP_004090301.1| hypothetical protein Rumal_3992 [Ruminococcus albus 7] gi|315450854|gb|ADU24415.1| hypothetical protein Rumal_3992 [Ruminococcus albus 7] Length = 329 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 23/91 (25%) Query: 11 IRVLMYC----AIHNDYPNRI---------SQIAEACCISELFLFKILQPLVKAGIVE-- 55 IRVLMY + D N + IAE IS + K + L KAGI++ Sbjct: 141 IRVLMYLFFRLSKSGDVTNDLVFKSKFTAYKAIAEQLGISVQTVRKAIAHLRKAGIIKIG 200 Query: 56 -TVRGRRGGVRLCRP-------ADQITILDV 78 +V G L P + T+ ++ Sbjct: 201 CSVEYSNNGHSLAFPVHRTTFSLSECTVAEI 231 >gi|238061296|ref|ZP_04606005.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] gi|237883107|gb|EEP71935.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] Length = 332 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A ISE +++ + L AG+ V RGR GG RL Sbjct: 1 MVLLLQSREAMTAAELARELEISERTVYRDVLALSAAGVPVYADRGRAGGYRL 53 >gi|226362782|ref|YP_002780560.1| IclR family transcriptional regulator [Rhodococcus opacus B4] gi|226241267|dbj|BAH51615.1| putative IclR family transcriptional regulator [Rhodococcus opacus B4] Length = 267 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L A H ++ +A+ IS F++L L + G+V+ Sbjct: 18 AVRLLRELAAHPRTGATVTTLAKGVGISRPTAFRLLYSLERTGLVD 63 >gi|118470971|ref|YP_888114.1| GntR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118172258|gb|ABK73154.1| regulatory protein GntR, HTH [Mycobacterium smegmatis str. MC2 155] Length = 244 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 D +++E +S + + L + G++ RGR GG Sbjct: 34 RPGDRLPTERELSEMLDVSRTTVRTAVAVLEREGLIAVRRGRGGGF 79 >gi|323357502|ref|YP_004223898.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273873|dbj|BAJ74018.1| transcriptional regulator [Microbacterium testaceum StLB037] Length = 238 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++A +S + + L+ L AG +ET RGR GG Sbjct: 38 LVAPGESLPAERELAALYGVSRDTVREALRELADAGWLETRRGRYGG 84 >gi|302538888|ref|ZP_07291230.1| transcriptional regulator [Streptomyces sp. C] gi|302447783|gb|EFL19599.1| transcriptional regulator [Streptomyces sp. C] Length = 338 Score = 40.3 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 13/76 (17%) Query: 14 LMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC--- 67 L+ A+ + + +A +SE + + Q L +AG+ + + RGR GG RL Sbjct: 6 LIRMALLVQSSPGLTAASLALELGVSERTVIRDAQALQEAGVPIRSERGRTGGYRLAPGY 65 Query: 68 -------RPADQITIL 76 RPA+ T+ Sbjct: 66 RTRLTTLRPAEAETLY 81 >gi|72162065|ref|YP_289722.1| iron dependent repressor [Thermobifida fusca YX] gi|71915797|gb|AAZ55699.1| iron dependent repressor [Thermobifida fusca YX] Length = 229 Score = 40.3 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY ++V+ P IS++AE +S + +L+ L + G+V+ R G VRL Sbjct: 14 DY-VKVIYDLQERGSGPVTISRVAERLAVSNSSVSGMLRKLGELGLVDHQR--YGDVRLT 70 Query: 68 RPADQITILDVVK 80 D++ + V++ Sbjct: 71 PTGDKVALA-VLR 82 >gi|298243826|ref|ZP_06967633.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297556880|gb|EFH90744.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 429 Score = 40.3 bits (94), Expect = 0.091, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +LM +AE +SE +++ L+ L AGI V T RG GG L Sbjct: 7 LTILMLL--QTKGRMTARDLAERLEVSERTIYRDLEALGIAGIPVYTERGHGGGCEL 61 >gi|307320717|ref|ZP_07600129.1| putative transcriptional regulator, ArsR family [Sinorhizobium meliloti AK83] gi|306893644|gb|EFN24418.1| putative transcriptional regulator, ArsR family [Sinorhizobium meliloti AK83] Length = 137 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 25/101 (24%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 + H +IA + + L L +AG+V T R + I Sbjct: 24 FLVKHEPDGLPAGEIARLLNVPHNTMSTHLAQLQRAGLVTTRR----------QSRSI-- 71 Query: 76 LDVVKA-TEE-----SFFVAECFASHKIDC-----PLVGSC 105 + +A + SF + +C A H C L C Sbjct: 72 --IYRADLDGLRHVVSFLLKDCCAGHPDVCAPLVADLTPCC 110 >gi|258654890|ref|YP_003204046.1| IclR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558115|gb|ACV81057.1| transcriptional regulator, IclR family [Nakamurella multipartita DSM 44233] Length = 265 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 IR+L A +S+IA +++ + + L + G+V R G L R Sbjct: 22 AIRILDLLAEQRGQTLTLSEIARGLGLAKSSVSNMCAALEEGGLV---RRTAAGYLLGR 77 >gi|256783174|ref|ZP_05521605.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] Length = 309 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S L + + L + G V V+G GG RL Sbjct: 33 LAERLDVSARTLRRDVDRLRELGYPVRAVKGPDGGYRL 70 >gi|328880520|emb|CCA53759.1| hypothetical protein SVEN_0472 [Streptomyces venezuelae ATCC 10712] Length = 193 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 13/98 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRLC--- 67 RVL+ A R+ +A AC ++E + I+ L AG + GRR RL Sbjct: 19 RVLVVIARDPG--VRLRDVAAACGVTERTVQAIVADLEAAGYLTHAREGRRNRYRLAPGK 76 Query: 68 --RPAD----QIT-ILDVVKATEESFFVAECFASHKID 98 R +IT +LD++KA+ A D Sbjct: 77 RFRHPLEGDYEITGLLDLLKASPGDGSTGRHAADRDGD 114 >gi|300779642|ref|ZP_07089498.1| ArsR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300533752|gb|EFK54811.1| ArsR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 94 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGR 60 +R+L A P +S++A +S+ + L+ L AG++ +T +GR Sbjct: 23 LRLLSQLAEDGCGPISVSELAAQSGLSQPTVSHHLKKLTDAGLLTKTRQGR 73 >gi|311897098|dbj|BAJ29506.1| putative DeoR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 328 Score = 40.3 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++ +S L + + L + G VE RG GG +L Sbjct: 24 EELSARLGVSGRTLRRDVDRLRELGYPVEARRGVDGGYQLA 64 >gi|300783126|ref|YP_003763417.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792640|gb|ADJ43015.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 244 Score = 40.3 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 L A P + +A +S + + + L L + G+VET RGR GG Sbjct: 36 LGLLADQEQLP-SEADLAAQFGVSTVTVREALVALRQQGLVETRRGRSGG 84 >gi|83953692|ref|ZP_00962413.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. NAS-14.1] gi|83841637|gb|EAP80806.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. NAS-14.1] Length = 247 Score = 40.3 bits (94), Expect = 0.097, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 9/109 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74 ++ ++++ +S + + L+ L ++ T RG GG + R A QIT Sbjct: 31 DERLPSEAELSAQFNVSRATVREALKRLAAQSLIRTQRGATGGAFVNRISFEAAQAQQIT 90 Query: 75 ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAFFD 120 ++ + + F C FA + PL + L NA Sbjct: 91 TSTLLLSMNDVSFETACEARFALERACAPLSAARRQEHHLDAMQNALAA 139 >gi|116662392|ref|YP_829445.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24] gi|116613171|gb|ABK05864.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24] Length = 277 Score = 40.3 bits (94), Expect = 0.097, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 17/79 (21%) Query: 3 LTKRTDYGIRVLMY-------CAIHNDYP------NRISQIAEACCISELFLF-KILQPL 48 ++ RT G+ + A + + + +A IS L KIL L Sbjct: 67 MSARTRLGLSAVTEISEVATLMAFQSGKDQEAPQFLQTASLAARTGISPGHLRSKILPRL 126 Query: 49 VKAGIVETVRGRRGGVRLC 67 V+ G + + R GG L Sbjct: 127 VERGWILS---RGGGWALS 142 >gi|329927127|ref|ZP_08281472.1| HTH domain protein [Paenibacillus sp. HGF5] gi|328938670|gb|EGG35050.1| HTH domain protein [Paenibacillus sp. HGF5] Length = 313 Score = 40.3 bits (94), Expect = 0.098, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++R I+++M + + ++A+ +S + + L L G+ + +V+G Sbjct: 1 MQKSQRL---IQLMMMI--NAKKSFTVRELADEFGLSVRTISRDLDELSGLGVPIYSVQG 55 Query: 60 RRGGVRL 66 R GG RL Sbjct: 56 RGGGYRL 62 >gi|261409202|ref|YP_003245443.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285665|gb|ACX67636.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. Y412MC10] Length = 313 Score = 40.3 bits (94), Expect = 0.098, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++R I+++M + + ++A+ +S + + L L G+ + +V+G Sbjct: 1 MQKSQRL---IQLMMMI--NAKKSFTVRELADEFGLSVRTISRDLDELSGLGVPIYSVQG 55 Query: 60 RRGGVRL 66 R GG RL Sbjct: 56 RGGGYRL 62 >gi|308174035|ref|YP_003920740.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus amyloliquefaciens DSM 7] gi|307606899|emb|CBI43270.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus amyloliquefaciens DSM 7] gi|328552839|gb|AEB23331.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus amyloliquefaciens TA208] gi|328912365|gb|AEB63961.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus amyloliquefaciens LL3] Length = 325 Score = 40.3 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%) Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70 L+ + D +I++A S ++K ++ L K G VE VR + G RL + Sbjct: 9 LIDLFSEAGDGFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 66 Query: 71 ----DQITIL 76 +I Sbjct: 67 KLSESEIRFG 76 >gi|289665634|ref|ZP_06487215.1| repressor [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 164 Score = 40.3 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78 +AE I L + ++ L + G V G GG RL + A + +L Sbjct: 16 QGGRSWSGVALAERLDIHPRSLRRDIERLRELGYPVHAAPGSGGGYRLGQGASALPLL-- 73 Query: 79 VKATEESFFVA 89 EE + Sbjct: 74 ---FEEDEALT 81 >gi|269128367|ref|YP_003301737.1| Helix-turn-helix type 11 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268313325|gb|ACY99699.1| Helix-turn-helix type 11 domain protein [Thermomonospora curvata DSM 43183] Length = 317 Score = 40.3 bits (94), Expect = 0.100, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL--- 66 +R+L +P ++A +SE L + + L + G V+ RG GG +L Sbjct: 2 LRLLSLLQTRRYWPGP--ELAAKLGVSERTLRRDIDRLRELGYPVDAERGVGGGYQLRSG 59 Query: 67 -CRPA 70 P Sbjct: 60 TAMPP 64 >gi|258652012|ref|YP_003201168.1| Helix-turn-helix type 11 domain-containing protein [Nakamurella multipartita DSM 44233] gi|258555237|gb|ACV78179.1| Helix-turn-helix type 11 domain protein [Nakamurella multipartita DSM 44233] Length = 333 Score = 40.3 bits (94), Expect = 0.100, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + + +++AE + E + + + L GI +E GR GG R+ Sbjct: 14 LQSAGVRTATELAERFDVDERTIRRTVDRLRDLGIPIEARPGRYGGYRIA 63 >gi|312196533|ref|YP_004016594.1| hypothetical protein FraEuI1c_2693 [Frankia sp. EuI1c] gi|311227869|gb|ADP80724.1| hypothetical protein FraEuI1c_2693 [Frankia sp. EuI1c] Length = 424 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++A+ +S L + ++ L + G V RG GG +L Sbjct: 75 AELADRLAVSARTLRRDVERLRELGYPVRASRGVAGGYQL 114 >gi|126727693|ref|ZP_01743525.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] gi|126703109|gb|EBA02210.1| transcriptional regulator, BadM/Rrf2 family protein [Rhodobacterales bacterium HTCC2150] Length = 107 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 19/114 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + D I + + ++L L A L R + I + DV Sbjct: 7 NPDRLRISLDITNHAEANPAAVRRVLGRLRIA--------------LARQPESIILADVY 52 Query: 80 KATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFDVLTQYSIECL 130 A +ES + C + C L SV+ + + + ++ + Sbjct: 53 LALDESLIATD-GDQQASTCSVDYALQRCVL-SVMDQIEQSLIQHRGKTTLSEV 104 >gi|312136709|ref|YP_004004046.1| phosphate uptake regulator, phou [Methanothermus fervidus DSM 2088] gi|311224428|gb|ADP77284.1| phosphate uptake regulator, PhoU [Methanothermus fervidus DSM 2088] Length = 305 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 5/45 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +++++Y + P+ ++IA+ IS ++ K+LQPL+ G+V+ Sbjct: 15 LKIILY-----ENPSTQAEIAKKLGISRRYVTKLLQPLINKGVVK 54 >gi|206900569|ref|YP_002250406.1| transcriptional repressor of the xylose operon, putative [Dictyoglomus thermophilum H-6-12] gi|206739672|gb|ACI18730.1| transcriptional repressor of the xylose operon, putative [Dictyoglomus thermophilum H-6-12] Length = 387 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 15/64 (23%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRG---------G 63 + + P ++IA +S + ++ L+K G+V ++ +GR+G G Sbjct: 21 LREEGPISRAEIARRLGLSRPTVSTHIKDLLKEGLVIEVGKGKSSKGRKGILLKYNARHG 80 Query: 64 VRLC 67 L Sbjct: 81 YFLA 84 >gi|126731416|ref|ZP_01747222.1| transcriptional regulator, GntR family protein [Sagittula stellata E-37] gi|126707952|gb|EBA07012.1| transcriptional regulator, GntR family protein [Sagittula stellata E-37] Length = 240 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + D +Q+AE ++ + + LV+AG++ + RG GV + Q I Sbjct: 29 LPGDKLPTEAQMAERFGVNRHTVRHGVAALVEAGVLRSRRGS--GVFVAAAPTQYPIGAR 86 Query: 79 VKATE 83 V+ TE Sbjct: 87 VRFTE 91 >gi|320334882|ref|YP_004171593.1| putative transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756171|gb|ADV67928.1| putative transcriptional regulator [Deinococcus maricopensis DSM 21211] Length = 323 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +RVL + +++A +S + + + L GI VE RG G RL Sbjct: 5 SMRVLTVLELLQARECVTGAELARRLEVSPRTVQRYVARLQDLGIPVEGRRGVGGAYRL 63 >gi|261409562|ref|YP_003245803.1| GntR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929244|ref|ZP_08283003.1| transcriptional regulator, GntR family [Paenibacillus sp. HGF5] gi|261286025|gb|ACX67996.1| transcriptional regulator, GntR family [Paenibacillus sp. Y412MC10] gi|328936803|gb|EGG33242.1| transcriptional regulator, GntR family [Paenibacillus sp. HGF5] Length = 121 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 11 IRVLMYCA--------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++++ Y + D + ++A I+ + + Q L + GIVET RG Sbjct: 13 LQIMTYLKKEIIIGKLLPGDKIPSVRELASELQINPNTVQRTFQELEREGIVETRRG 69 >gi|298291512|ref|YP_003693451.1| hypothetical protein Snov_1522 [Starkeya novella DSM 506] gi|296928023|gb|ADH88832.1| conserved hypothetical protein [Starkeya novella DSM 506] Length = 306 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 11 IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR-RGGVRLCR 68 + L A P ++++A A +S + ILQ V+ G+V V GR RGG L Sbjct: 214 LVALALFATGGTGRPTPVAELARAYRVSRSHVVDILQNAVQEGLVRRVEGRERGGF-LAE 272 Query: 69 P 69 P Sbjct: 273 P 273 >gi|225165691|ref|ZP_03727492.1| Transcriptional regulators-like protein [Opitutaceae bacterium TAV2] gi|224800067|gb|EEG18495.1| Transcriptional regulators-like protein [Opitutaceae bacterium TAV2] Length = 444 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 D + +S + L K ++ L + G ++T RG GG RL R Sbjct: 49 GDRLPPEREFCAELGVSRVTLRKAMESLHREGFLQTRRG--GGTRLAR 94 >gi|147921363|ref|YP_684823.1| ArsR family transcriptional regulator [uncultured methanogenic archaeon RC-I] gi|110620219|emb|CAJ35497.1| putative transcription regulator (ArsR family) [uncultured methanogenic archaeon RC-I] Length = 112 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+Y A ++++AE IS+ + + L L AGIV++ + Sbjct: 28 LIYLLASDGKERICVTELAEQLGISQPAVSRHLSTLKHAGIVKSEK 73 >gi|320354020|ref|YP_004195359.1| GntR domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122522|gb|ADW18068.1| GntR domain protein [Desulfobulbus propionicus DSM 2032] Length = 234 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 12/69 (17%) Query: 9 YGIRVLMY----------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 Y R ++ A D ++AE+ +S L + L + GI+E+ + Sbjct: 10 YAYRAIIDRIESMIADGELA-PGDRLPPERKLAESLGVSRGSLRQAFHILAERGIIESRQ 68 Query: 59 GRRGGVRLC 67 G G L Sbjct: 69 G-DGTYLLA 76 >gi|21225792|ref|NP_631571.1| DeoR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|7799263|emb|CAB90885.1| putative DeoR-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 343 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S L + + L + G V V+G GG RL Sbjct: 36 LAERLDVSARTLRRDVDRLRELGYPVRAVKGPDGGYRL 73 >gi|89068852|ref|ZP_01156235.1| transcriptional regulator, ArsR family protein [Oceanicola granulosus HTCC2516] gi|89045622|gb|EAR51685.1| transcriptional regulator, ArsR family protein [Oceanicola granulosus HTCC2516] Length = 112 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 13/90 (14%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +R L+ CA IA A + L L AG+V++VR GR +R Sbjct: 22 LRALI-CAGPEG--MTAGNIAAAQGAKANTMSSHLSVLSAAGLVQSVREGRH--IRYSAR 76 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDC 99 ++I +V+ SF + +C C Sbjct: 77 PERI--GEVL-----SFLIDDCCGGEPGRC 99 >gi|312136318|ref|YP_004003655.1| signal transduction protein with cbs domains [Methanothermus fervidus DSM 2088] gi|311224037|gb|ADP76893.1| putative signal transduction protein with CBS domains [Methanothermus fervidus DSM 2088] Length = 293 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + +IA + + +Q L G+V+ V G RGG + Sbjct: 21 KGRSIKGEEIASKLNRNPGTIRNQMQALRSLGLVKGVPGPRGGYK 65 >gi|284045417|ref|YP_003395757.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949638|gb|ADB52382.1| regulatory protein GntR HTH [Conexibacter woesei DSM 14684] Length = 272 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + ++ + +S L + L+ L G++ G+ GG + T+ D Sbjct: 49 AQGERLPSERELCQTFGVSRATLREALRSLEALGLLAIRPGKTGG-AFAVRPSESTLGDA 107 Query: 79 VKAT 82 + A Sbjct: 108 LSAL 111 >gi|116248852|ref|YP_764693.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253502|emb|CAK11894.1| putative GntR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 251 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 14/120 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-----ADQIT- 74 ++ +A++ IS + + L+ L ++ + RG GG + RP + IT Sbjct: 33 DERLPTEEDLAKSFGISRPTVREALKRLAAQNLIRSKRGPAGGNFVKRPDPEGLSKAITG 92 Query: 75 -----ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 + + A + + + + C L + S L L +I Sbjct: 93 AATLLVG--IGAFDIEEIITARLETETVCCRLAAANRDESHLAAMEAEIAVQLDP-TISD 149 >gi|255023691|ref|ZP_05295677.1| hypothetical protein LmonocyFSL_10125 [Listeria monocytogenes FSL J1-208] Length = 35 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAE 32 M +T + YG+ + + A D P + IA+ Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQ 33 >gi|45358628|ref|NP_988185.1| BadM/Rrf2 family transcriptional regulator [Methanococcus maripaludis S2] gi|45047494|emb|CAF30621.1| conserved hypothetical archaeal protein [Methanococcus maripaludis S2] Length = 144 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ ++L H+ +IA + + ++ L G VET +G+ Sbjct: 1 MKIDGLTE---KILTLLKKHS----TTREIAAELETHPKNIDRYIRVLRDLGFVETKKGK 53 Query: 61 RGGVRLC 67 GGV L Sbjct: 54 TGGVFLT 60 >gi|15964830|ref|NP_385183.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307300900|ref|ZP_07580669.1| putative transcriptional regulator, ArsR family [Sinorhizobium meliloti BL225C] gi|15074009|emb|CAC45656.1| Transcriptional regulator [Sinorhizobium meliloti 1021] gi|306903855|gb|EFN34441.1| putative transcriptional regulator, ArsR family [Sinorhizobium meliloti BL225C] Length = 137 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 25/101 (24%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 + H +IA + + L L +AG+V T R + I Sbjct: 24 FLVKHEPDGLPAGEIARLLNVPHNTMSTHLAQLQRAGLVTTRR----------QSRSI-- 71 Query: 76 LDVVKA-TEE-----SFFVAECFASHKIDC-----PLVGSC 105 + +A + SF + +C A H C L C Sbjct: 72 --IYRADLDGLRHVVSFLLKDCCAGHPDVCAPLVADLTPCC 110 >gi|305663267|ref|YP_003859555.1| transcriptional regulator, TrmB [Ignisphaera aggregans DSM 17230] gi|304377836|gb|ADM27675.1| transcriptional regulator, TrmB [Ignisphaera aggregans DSM 17230] Length = 125 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + TD +R+ +Y + ++ P +IA + I + L+ GIV R GG Sbjct: 5 RLTDTAMRIYIYM-LESNTPLSAREIARSLNIPVSTVSYYLKRFKDMGIV---REAGGGY 60 Query: 65 RLCRP 69 + R Sbjct: 61 IVVRK 65 >gi|218295632|ref|ZP_03496428.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23] gi|218243791|gb|EED10318.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23] Length = 844 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +RVL Y A H + ++A S + +L LV+ G V+G G L R Sbjct: 13 ALRVLAYLAEHPEG-VEAKEVARHLGRSLSAAYALLNSLVEEGF--AVKG-EGRYTLARA 68 >gi|154686491|ref|YP_001421652.1| hypothetical protein RBAM_020590 [Bacillus amyloliquefaciens FZB42] gi|154352342|gb|ABS74421.1| BirA [Bacillus amyloliquefaciens FZB42] Length = 325 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%) Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70 L+ + D +I++A S ++K ++ L K G VE VR + G RL + Sbjct: 9 LIDLFSEAGDGFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 66 Query: 71 ----DQITIL 76 +I Sbjct: 67 KLSESEIRFG 76 >gi|258650361|ref|YP_003199517.1| Helix-turn-helix type 11 domain-containing protein [Nakamurella multipartita DSM 44233] gi|258553586|gb|ACV76528.1| Helix-turn-helix type 11 domain protein [Nakamurella multipartita DSM 44233] Length = 325 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S + + + L G V +G GG RL Sbjct: 29 LAERLEVSPRTVRRDVDRLRDLGYPVRATKGPDGGYRL 66 >gi|145222250|ref|YP_001132928.1| regulatory protein, ArsR [Mycobacterium gilvum PYR-GCK] gi|145214736|gb|ABP44140.1| transcriptional regulator, ArsR family [Mycobacterium gilvum PYR-GCK] Length = 183 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + IA + +S+ + L+ L AGI+++ R Sbjct: 96 LRLLSLIASNPGGEACVCDIAASFDLSQPTISHHLKVLRTAGILDSER 143 >gi|110635459|ref|YP_675667.1| GntR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286443|gb|ABG64502.1| transcriptional regulator, GntR family [Chelativorans sp. BNC1] Length = 356 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 10/74 (13%) Query: 9 YGIRVLMYCAIHNDYPN-----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 YG+ L Y H+D P + Q+A I+ + + ++ Q L AG++E RG+ G Sbjct: 22 YGL--LSYYLSHSDIPYGTKLQSVRQLAAELGIAPMTVSQVYQQLRDAGLIEMRRGK-GA 78 Query: 64 VRLCRPADQITILD 77 R + + D Sbjct: 79 YS-ARDPHK-KLGD 90 >gi|182440267|ref|YP_001827986.1| GntR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468783|dbj|BAG23303.1| putative GntR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 253 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPA 70 + ++++ IS + L + L+ L G+VE+ RGR GG L R A Sbjct: 50 LVAPGERLPSERELSQQLRISRVTLREALKVLQDQGMVESRRGRYGGTFVLPRTA 104 >gi|300870971|ref|YP_003785842.1| ribonuclease BN [Brachyspira pilosicoli 95/1000] gi|300688670|gb|ADK31341.1| ribonuclease BN, putative [Brachyspira pilosicoli 95/1000] Length = 539 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 I+N + +A ++ L I L +A V+ V G L P + ITI D Sbjct: 430 INNKKCMSMYDLARDLRVAPSVLNDIADSLEEAQYIVKIVNGSTTSYTLACPPEHITIGD 489 Query: 78 VV 79 ++ Sbjct: 490 IL 491 >gi|262200795|ref|YP_003272003.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084142|gb|ACY20110.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247] Length = 120 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R+L A H + I+ +S+ + L+ L +AG+V + R Sbjct: 35 LRLLSEVAAHPGGEACVCDISGPFELSQPTISHHLKVLREAGLVTSERRA 84 >gi|326780930|ref|ZP_08240195.1| GntR domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661263|gb|EGE46109.1| GntR domain protein [Streptomyces cf. griseus XylebKG-1] Length = 253 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPA 70 + ++++ IS + L + L+ L G+VE+ RGR GG L R A Sbjct: 50 LVAPGERLPSERELSQQLRISRVTLREALKVLQDQGMVESRRGRYGGTFVLPRTA 104 >gi|284034738|ref|YP_003384669.1| AsnC family transcriptional regulator [Kribbella flavida DSM 17836] gi|283814031|gb|ADB35870.1| transcriptional regulator, AsnC family [Kribbella flavida DSM 17836] Length = 161 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 20/123 (16%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-----GRRGG-- 63 +R L D R S +A +S + + + L ++G++ R G Sbjct: 26 LRALTD-----DPRARTSDLARRLGVSAPTVRERVARLEESGVIRGYRLELDPAALGLPV 80 Query: 64 ---VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 VRL QI +V+ E + V EC DC L+ + AL A D Sbjct: 81 AAWVRLKPGPGQIP--RIVELAERTPEVVECHRISGEDCFLI---RVQVPAIDALEALLD 135 Query: 121 VLT 123 L Sbjct: 136 TLN 138 >gi|296108978|ref|YP_003615927.1| phosphate uptake regulator, PhoU [Methanocaldococcus infernus ME] gi|295433792|gb|ADG12963.1| phosphate uptake regulator, PhoU [Methanocaldococcus infernus ME] Length = 283 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 21/35 (60%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P +IAE IS ++ K+L+PL+ GIV+ Sbjct: 23 EEAPETQDEIAEKLGISRRYVAKLLKPLINEGIVK 57 >gi|67078214|ref|YP_245834.1| MSM (multiple sugar metabolism) operon regulatory protein [Bacillus cereus E33L] gi|66970520|gb|AAY60496.1| MSM (multiple sugar metabolism) operon regulatory protein [Bacillus cereus E33L] Length = 301 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 K + I ++Y H +S +A ++ L ++ Q Sbjct: 169 KFSRLAIEAMIYIGKHYIEEITVSDVANHLAVNRSHLSRVFQ 210 >gi|302544715|ref|ZP_07297057.1| hypothetical protein SSOG_05140 [Streptomyces hygroscopicus ATCC 53653] gi|302462333|gb|EFL25426.1| hypothetical protein SSOG_05140 [Streptomyces himastatinicus ATCC 53653] Length = 145 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 P S++A SE + + L+ L AG+V + R Sbjct: 80 RAGEPITTSELATRLGSSEPQVSRTLRTLRDAGLVRSTR 118 >gi|228918505|ref|ZP_04081948.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841121|gb|EEM86320.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 301 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 K + I ++Y H +S +A ++ L ++ Q Sbjct: 169 KFSRLAIEAMIYIGEHYIEEITVSDVANHLAVNRSHLSRVFQ 210 >gi|330468339|ref|YP_004406082.1| DeoR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811310|gb|AEB45482.1| DeoR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 338 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +AE IS + + + L + G + V+G GG RL Sbjct: 26 LAERLDISLRTVRRDVDRLRELGYPIAAVKGPDGGYRLS 64 >gi|311742034|ref|ZP_07715844.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314527|gb|EFQ84434.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 116 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLC 67 IRVL D P ++ + S L + L L +AG+V + R GG RL Sbjct: 32 IRVLELL---QDGPRQVRDLLAVLGTSSSNLSQQLAVLRRAGLVTSSR--AGGTVSYRLS 86 Query: 68 RP 69 P Sbjct: 87 TP 88 >gi|271965437|ref|YP_003339633.1| helix-turn-helix type 11 domain-containing protein [Streptosporangium roseum DSM 43021] gi|270508612|gb|ACZ86890.1| helix-turn-helix type 11 domain-containing protein [Streptosporangium roseum DSM 43021] Length = 317 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 10 GIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R++ + + ++++ +SE + + + L +AG+ V RGR GG RL Sbjct: 3 AARLMSLVLLLQARGGMTATELSRELEVSERTVHRDVLALSEAGVPVYADRGRGGGYRL 61 >gi|256824274|ref|YP_003148234.1| ArsR family transcriptional regulator [Kytococcus sedentarius DSM 20547] gi|256687667|gb|ACV05469.1| transcriptional regulator, ArsR family [Kytococcus sedentarius DSM 20547] Length = 98 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 +R+L H + ++++AEA IS+ + L+ L G VE R GR RL Sbjct: 22 LRLLDRMHHHPG--SSVAELAEAAGISQATASQALRTLRSQGWVEATRDGRSMRYRL 76 >gi|333028890|ref|ZP_08456954.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332748742|gb|EGJ79183.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 338 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL+ + ++A ++ + + ++ L G V ++G GG RL Sbjct: 16 RVLVLLGLLQRGRSWSGPELAARLGVTSRTVRRDVERLRALGYPVHALQGVGGGYRLG 73 >gi|311893813|dbj|BAJ26221.1| putative MarR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 177 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 10 GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 G+R V+ +H P I ++AE+ + L + + + +AG VETV G Sbjct: 51 GLRSSFVMELLRLHARGPMTIGELAESVHRTHSALSQKVAAMRRAGWVETVPGA 104 >gi|315647036|ref|ZP_07900149.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] gi|315277238|gb|EFU40567.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] Length = 106 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 18/66 (27%) Query: 1 MHLTKRTDYGIRVLMYCAIHN---------DYPNRISQIAEACCISELFLFKILQPLVKA 51 M LT L+ A N + P + +I +A IS+ + + L+ L +A Sbjct: 1 MQLT---------LLTLAEPNRFNIVELLRNGPKSVGEIVQALGISQPHVSRHLRILSEA 51 Query: 52 GIVETV 57 G+V + Sbjct: 52 GMVRSR 57 >gi|317049018|ref|YP_004116666.1| IclR family transcriptional regulator [Pantoea sp. At-9b] gi|316950635|gb|ADU70110.1| transcriptional regulator, IclR family [Pantoea sp. At-9b] Length = 261 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++L H + +IA+A + + +I+ L A +V + GG+RL Sbjct: 22 AAKILNALGEHPGG-MSLGEIAQAVDLPRSTVQRIVAALDNAQLVRST--GAGGLRLG 76 >gi|296141708|ref|YP_003648951.1| hypothetical protein Tpau_4041 [Tsukamurella paurometabola DSM 20162] gi|296029842|gb|ADG80612.1| Helix-turn-helix type 11 domain protein [Tsukamurella paurometabola DSM 20162] Length = 316 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++A+ +S L + ++ L + G V RG GG +L Sbjct: 24 TELADRLEVSVRTLRRDIERLRELGYPVNASRGVDGGYQLA 64 >gi|256392477|ref|YP_003114041.1| hypothetical protein Caci_3293 [Catenulispora acidiphila DSM 44928] gi|256358703|gb|ACU72200.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila DSM 44928] Length = 327 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +A +S + + + L + G + V+G GG RL Sbjct: 31 ADLAARLEVSPRTVRRDVDRLRELGYPIAAVKGPDGGYRLG 71 >gi|222444845|ref|ZP_03607360.1| hypothetical protein METSMIALI_00458 [Methanobrevibacter smithii DSM 2375] gi|222434410|gb|EEE41575.1| hypothetical protein METSMIALI_00458 [Methanobrevibacter smithii DSM 2375] Length = 300 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 N + IAE + + +Q L G+V+ V G RGG + Sbjct: 21 NGGSIKGEDIAEIMSRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 65 >gi|148643674|ref|YP_001274187.1| transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|261350584|ref|ZP_05976001.1| CBS domain protein [Methanobrevibacter smithii DSM 2374] gi|148552691|gb|ABQ87819.1| predicted transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|288861367|gb|EFC93665.1| CBS domain protein [Methanobrevibacter smithii DSM 2374] Length = 300 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 N + IAE + + +Q L G+V+ V G RGG + Sbjct: 21 NGGSIKGEDIAEIMSRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 65 >gi|326315133|ref|YP_004232805.1| IclR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371969|gb|ADX44238.1| transcriptional regulator, IclR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 259 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69 +R+L + ++ +S IA I + ++L+ L +A +V + G G L R Sbjct: 10 LRILDQLSRYDAGGLSLSDIARQSGIPHPTVHRLLRDLAQARLVTLL--PDGRGYVLGRL 67 Query: 70 ADQITIL 76 A ++ + Sbjct: 68 AYEVGLA 74 >gi|148252310|ref|YP_001236895.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404483|gb|ABQ32989.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1] Length = 243 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ P ++IA+ +S + + L+ L +G++E G + RP Sbjct: 51 ALAPGAPLDETEIAKRFNVSRTPVREALRQLAASGLIEAR--AHRGAVVARP-------- 100 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 + + + E A + C + + +T V R+ L A + L S Sbjct: 101 ---SVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIHEELRNLS 146 >gi|288560309|ref|YP_003423795.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543019|gb|ADC46903.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 308 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 11 IRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 ++ L+ ++D + IAE + + +Q L +V+ V G RGG + Sbjct: 10 LQTLINLYQNSDGKSIKGEDIAEVMNRNPGTIRNQMQSLRSLSLVKGVPGPRGGYK 65 >gi|148822882|ref|YP_001287636.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|218753381|ref|ZP_03532177.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|253799287|ref|YP_003032288.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254550682|ref|ZP_05141129.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554552|ref|ZP_06443762.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289761829|ref|ZP_06521207.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|297634225|ref|ZP_06952005.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297731212|ref|ZP_06960330.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|313658544|ref|ZP_07815424.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|148721409|gb|ABR06034.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|253320790|gb|ACT25393.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289439184|gb|EFD21677.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289709335|gb|EFD73351.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|328459038|gb|AEB04461.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 218 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72 L+ + + + +A A ++ + L L +AG+V + R G+R L P Sbjct: 27 LLDLLVQGER--SVDALARASGLTFANASQHLLQLRRAGLVTSRRDGKRVIYALSDPQ-- 82 Query: 73 ITILDVVKAT 82 + DVV+A Sbjct: 83 --VWDVVRAV 90 >gi|302552060|ref|ZP_07304402.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302469678|gb|EFL32771.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 323 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G V+ +G GG RL P Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVQASKGADGGYRLVAGKAMPP 72 >gi|294629874|ref|ZP_06708434.1| DeoR-family transcriptional regulator [Streptomyces sp. e14] gi|292833207|gb|EFF91556.1| DeoR-family transcriptional regulator [Streptomyces sp. e14] Length = 351 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++AE +S + + + L + G V+ G GG RL P Sbjct: 26 ELAERLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72 >gi|15608812|ref|NP_216190.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15841129|ref|NP_336166.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31792860|ref|NP_855353.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121637581|ref|YP_977804.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661470|ref|YP_001282993.1| transcription regulator ArsR [Mycobacterium tuberculosis H37Ra] gi|167969210|ref|ZP_02551487.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|215404024|ref|ZP_03416205.1| transcription regulator ArsR [Mycobacterium tuberculosis 02_1987] gi|215411321|ref|ZP_03420129.1| transcription regulator ArsR [Mycobacterium tuberculosis 94_M4241A] gi|215426996|ref|ZP_03424915.1| transcription regulator ArsR [Mycobacterium tuberculosis T92] gi|215430565|ref|ZP_03428484.1| transcription regulator ArsR [Mycobacterium tuberculosis EAS054] gi|215445860|ref|ZP_03432612.1| transcription regulator ArsR [Mycobacterium tuberculosis T85] gi|219557594|ref|ZP_03536670.1| transcription regulator ArsR [Mycobacterium tuberculosis T17] gi|224990056|ref|YP_002644743.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254231869|ref|ZP_04925196.1| hypothetical protein TBCG_01626 [Mycobacterium tuberculosis C] gi|254364516|ref|ZP_04980562.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|260186623|ref|ZP_05764097.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CPHL_A] gi|260200737|ref|ZP_05768228.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|260204942|ref|ZP_05772433.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis K85] gi|289443131|ref|ZP_06432875.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289447286|ref|ZP_06437030.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289569721|ref|ZP_06449948.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289574342|ref|ZP_06454569.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289745889|ref|ZP_06505267.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289750230|ref|ZP_06509608.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289753765|ref|ZP_06513143.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289757785|ref|ZP_06517163.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294996623|ref|ZP_06802314.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|298525173|ref|ZP_07012582.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|306775860|ref|ZP_07414197.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779676|ref|ZP_07418013.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306784409|ref|ZP_07422731.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306788776|ref|ZP_07427098.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306793111|ref|ZP_07431413.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306797491|ref|ZP_07435793.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306803372|ref|ZP_07440040.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306807954|ref|ZP_07444622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306967771|ref|ZP_07480432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306971967|ref|ZP_07484628.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307079681|ref|ZP_07488851.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307084256|ref|ZP_07493369.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|2916972|emb|CAA17604.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13881347|gb|AAK45980.1| transcriptional regulator, ArsR family [Mycobacterium tuberculosis CDC1551] gi|31618450|emb|CAD96368.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121493228|emb|CAL71699.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600928|gb|EAY59938.1| hypothetical protein TBCG_01626 [Mycobacterium tuberculosis C] gi|134150030|gb|EBA42075.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148505622|gb|ABQ73431.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|224773169|dbj|BAH25975.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289416050|gb|EFD13290.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289420244|gb|EFD17445.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289538773|gb|EFD43351.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289543475|gb|EFD47123.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289686417|gb|EFD53905.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289690817|gb|EFD58246.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289694352|gb|EFD61781.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289713349|gb|EFD77361.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298494967|gb|EFI30261.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|308215613|gb|EFO75012.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327329|gb|EFP16180.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308330771|gb|EFP19622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308334594|gb|EFP23445.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308338381|gb|EFP27232.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308342104|gb|EFP30955.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308345575|gb|EFP34426.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308349893|gb|EFP38744.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308354514|gb|EFP43365.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308358489|gb|EFP47340.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308362430|gb|EFP51281.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308366113|gb|EFP54964.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323719763|gb|EGB28877.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326903288|gb|EGE50221.1| transcriptional regulator [Mycobacterium tuberculosis W-148] Length = 218 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72 L+ + + + +A A ++ + L L +AG+V + R G+R L P Sbjct: 27 LLDLLVQGER--SVDALARASGLTFANASQHLLQLRRAGLVTSRRDGKRVIYALSDPQ-- 82 Query: 73 ITILDVVKAT 82 + DVV+A Sbjct: 83 --VWDVVRAV 90 >gi|297197780|ref|ZP_06915177.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197716631|gb|EDY60665.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 267 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 10 GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 +R VL A + P R+ +++EA + ++ +LQ LV+ G V T Sbjct: 22 AVRTVAVLELLAARGERPARLRELSEALGVPRSSMYALLQTLVECGWVRT 71 >gi|317406396|gb|EFV86616.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 256 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 + VL Y A +P ++Q+A+ + + L ++L + +AG V Sbjct: 34 ALLVLDYLARAQ-HPPTLAQLAQRLDMPKSTLMRLLASMQRAGFVAAT 80 >gi|318058581|ref|ZP_07977304.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318077918|ref|ZP_07985250.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 338 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL+ + ++A ++ + + ++ L G V ++G GG RL Sbjct: 16 RVLVLLGLLQRGRSWSGPELAARLGVTSRTVRRDVERLRALGYPVHALQGVGGGYRLG 73 >gi|302872722|ref|YP_003841358.1| transcriptional regulator, GntR family [Caldicellulosiruptor obsidiansis OB47] gi|302575581|gb|ADL43372.1| transcriptional regulator, GntR family [Caldicellulosiruptor obsidiansis OB47] Length = 121 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++++ I+ ++ Q L + G+++T RG Sbjct: 28 RPGEKLPSVREMSQKFNINPNTAQRVFQELEREGLIKTERGIG 70 >gi|146343578|ref|YP_001208626.1| GntR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196384|emb|CAL80411.1| putative transcriptional regulatory protein, GntR family [Bradyrhizobium sp. ORS278] Length = 224 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ P ++IA+ +S + + L+ L +G++E G + RP Sbjct: 32 ALAPGAPLDETEIAKRFNVSRTPVREALRQLAASGLIEAR--AHRGAVVARP-------- 81 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 + + + E A + C + + +T V R+ L A + L S Sbjct: 82 ---SVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIHEELRNLS 127 >gi|259415688|ref|ZP_05739608.1| ROK domain protein [Silicibacter sp. TrichCH4B] gi|259347127|gb|EEW58904.1| ROK domain protein [Silicibacter sp. TrichCH4B] Length = 413 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62 R+L+ +H D S++A +S + IL+ L + G+V E+ +GR G Sbjct: 37 RLLLSL-LHQDGALPGSEMARRTGLSSQTVSVILRKLEQDGLVQRGESQKGRVG 89 >gi|170745518|ref|YP_001766975.1| Crp/FNR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170659119|gb|ACB28173.1| transcriptional regulator, Crp/Fnr family [Methylobacterium radiotolerans JCM 2831] Length = 281 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A D P ++AE +S + + ++LQ L + G++ T+RGRR Sbjct: 200 AGQFDMPLTQRELAETLGLSSVHVNRVLQVLRRDGLI-TLRGRR 242 >gi|315426311|dbj|BAJ47952.1| transcriptional regulator, TrmB-like [Candidatus Caldiarchaeum subterraneum] Length = 263 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 TDY +R Y A+ P S+I++ I ++++L L + G + T GR Sbjct: 23 TDYEVRA--YIALVEHGPMTASEISDLKMIPYSKIYEVLGSLEEKGFIVTQSGR 74 >gi|315230134|ref|YP_004070570.1| hypothetical protein TERMP_00370 [Thermococcus barophilus MP] gi|315183162|gb|ADT83347.1| hypothetical protein TERMP_00370 [Thermococcus barophilus MP] Length = 59 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 V++ P + ++IAE I + + KI++ L K G + + Sbjct: 6 VVLEVMKKAGKPLKSAEIAEMTGIPKKEVDKIIKKLKKEGKIVS 49 >gi|29828281|ref|NP_822915.1| GntR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29605384|dbj|BAC69450.1| putative GntR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 251 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 21/36 (58%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 S++A +S + L + L L + G+V T RGR GG Sbjct: 55 SELAGQLGVSTVTLREALMALRQQGLVTTRRGRGGG 90 >gi|260903952|ref|ZP_05912274.1| GntR family transcriptional regulator [Brevibacterium linens BL2] Length = 257 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++AE +S L + + L AG V RGR GG Sbjct: 55 RELAEQLRVSRATLREAISELQTAGWVNVRRGRGGG 90 >gi|149008039|ref|ZP_01831587.1| hypothetical protein CGSSp18BS74_10514 [Streptococcus pneumoniae SP18-BS74] gi|147760447|gb|EDK67424.1| hypothetical protein CGSSp18BS74_10514 [Streptococcus pneumoniae SP18-BS74] Length = 88 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR---GRRGGVRLCRP 69 +++ A H ++ +IA+ +S + + + L K G + V+ GR GVR+ R Sbjct: 1 MMVVLANHPNWQVYSDEIAKRKGVSRDTVDRYFKILEKNGYLRIVKKGMGRGKGVRVFRF 60 Query: 70 ADQITILD 77 + I D Sbjct: 61 FSDVKISD 68 >gi|313682046|ref|YP_004059784.1| transcriptional regulator, arac family [Sulfuricurvum kujiense DSM 16994] gi|313154906|gb|ADR33584.1| transcriptional regulator, AraC family [Sulfuricurvum kujiense DSM 16994] Length = 291 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 RVL Y +H D ++++AE IS L +I + + ET++ +RL + A Sbjct: 15 RVLSYIYLHIDTDLNVAELAEMEGISPHHLHRIFKEETGRNLFETIKS----IRLQKSAS 70 >gi|289671356|ref|ZP_06492431.1| repressor [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 129 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78 +AE I L + ++ L + G V G GG RL + A + +L Sbjct: 16 QGGRSWSGVALAERLDIHPRSLRRDIERLRELGYPVRAAPGSGGGYRLGQGAAALPLL-- 73 Query: 79 VKATEESFFVA 89 EE + Sbjct: 74 ---FEEDEALT 81 >gi|56965148|ref|YP_176880.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911392|dbj|BAD65919.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 321 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 20/134 (14%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L + + N +AE +SE + + + L AGI V RG+ GG +L Sbjct: 5 RLLSIVLLLQNRKIISTKALAEELGVSERTVHRDMDALSSAGIPVYAERGKTGGWKL--- 61 Query: 70 ADQITILDVVK-----ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 LD + T+E F S ID L+G G T ++A L+ Sbjct: 62 ------LDGYRTQLTGLTKEEVKTL--FLSPPID--LLGDLGYTKNWQEAREKLLASLSS 111 Query: 125 YSIECLVRNRSSIK 138 + ++ I Sbjct: 112 ATSVDFADAQNRIY 125 >gi|297561022|ref|YP_003679996.1| hypothetical protein Ndas_2064 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845470|gb|ADH67490.1| Helix-turn-helix type 11 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 337 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++A+ ++ + + + L G V +G GG +L Sbjct: 14 RVLTLLGLLQRRRVWTGPELADRLGVTPRTVRRDVDRLRALGYPVHASQGVGGGYQLG 71 >gi|120608961|ref|YP_968639.1| IclR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587425|gb|ABM30865.1| transcriptional regulator, IclR family [Acidovorax citrulli AAC00-1] Length = 259 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69 +R+L + ++ +S IA I + ++L+ L +A +V + G G L R Sbjct: 10 LRILDQLSRYDAGGLSLSDIARQSGIPHPTVHRLLRDLAQARLVTLL--PDGRGYVLGRL 67 Query: 70 ADQITIL 76 A ++ + Sbjct: 68 AFEVGLA 74 >gi|327310087|ref|YP_004336984.1| ATP-NAD/AcoX kinase [Thermoproteus uzoniensis 768-20] gi|326946566|gb|AEA11672.1| ATP-NAD/AcoX kinase [Thermoproteus uzoniensis 768-20] Length = 297 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ Y ++ L P IAE + + L L KAG+VE Sbjct: 235 RLSPSMRYVLKTL-----EERGPLTSRSIAEFTGLPLRTVEYALNALRKAGLVEAK--IV 287 Query: 62 GGVR 65 GG+R Sbjct: 288 GGLR 291 >gi|89099205|ref|ZP_01172083.1| hypothetical protein B14911_07980 [Bacillus sp. NRRL B-14911] gi|89086051|gb|EAR65174.1| hypothetical protein B14911_07980 [Bacillus sp. NRRL B-14911] Length = 233 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 + +IAE I L L AG++ + G+ G + RP+ + D Sbjct: 30 VTVQEIAENFSIHANVARLHLSKLEDAGLLVSKSGKTG--KGGRPSRHYKLSD 80 >gi|319646502|ref|ZP_08000731.1| hypothetical protein HMPREF1012_01767 [Bacillus sp. BT1B_CT2] gi|317391090|gb|EFV71888.1| hypothetical protein HMPREF1012_01767 [Bacillus sp. BT1B_CT2] Length = 189 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ A ++ I++ ++ K++ LVK G V++V + + Sbjct: 45 ALIAIAHLPPETATLTNISKKLGTTKQTANKLMTGLVKKGYVKSVPSQ-------KDKRS 97 Query: 73 ITILDVVKATEESFFVAECFAS 94 I I E + EC Sbjct: 98 INIEM---TAEGKKALVECSER 116 >gi|313895891|ref|ZP_07829445.1| transcriptional regulator, AraC family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975316|gb|EFR40777.1| transcriptional regulator, AraC family [Selenomonas sp. oral taxon 137 str. F0430] Length = 255 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 Y + + Y H ++ + ++AE IS +L K+ Sbjct: 153 YLLHAVRYMEEHMEHSITVREVAEELGISVSYLHKLFAR 191 >gi|295705362|ref|YP_003598437.1| DeoR family transcriptional regulator [Bacillus megaterium DSM 319] gi|294803021|gb|ADF40087.1| transcriptional regulator, DeoR family [Bacillus megaterium DSM 319] Length = 319 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +LM+ + ++AE +S + + L L + G+ + + +GR GG R Sbjct: 10 MLMFI--NTKRTFTAKELAEEFGLSVRTVQRYLLDLSELGLPLYSEKGRSGGYR 61 >gi|294499992|ref|YP_003563692.1| DeoR family transcriptional regulator [Bacillus megaterium QM B1551] gi|294349929|gb|ADE70258.1| transcriptional regulator, DeoR family [Bacillus megaterium QM B1551] Length = 319 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +LM+ + ++AE +S + + L L + G+ + + +GR GG R Sbjct: 10 MLMFI--NTKRTFTAKELAEEFGLSVRTVQRYLLDLSELGLPLYSEKGRSGGYR 61 >gi|52079699|ref|YP_078490.1| DNA-binding transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785062|ref|YP_090891.1| hypothetical protein BLi01292 [Bacillus licheniformis ATCC 14580] gi|52002910|gb|AAU22852.1| hypothetical DNA-binding protein,putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347564|gb|AAU40198.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 189 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ A ++ I++ ++ K++ LVK G V++V + + Sbjct: 45 ALIAIAHLPPETATLTNISKKLGTTKQTANKLMTGLVKKGYVKSVPSQ-------KDKRS 97 Query: 73 ITILDVVKATEESFFVAECFAS 94 I I E + EC Sbjct: 98 INIEM---TAEGKKALVECSER 116 >gi|312621317|ref|YP_004022930.1| GntR family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|312201784|gb|ADQ45111.1| transcriptional regulator, GntR family [Caldicellulosiruptor kronotskyensis 2002] Length = 121 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++A+ I+ ++ Q L + G+ +T RG Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70 >gi|297618886|ref|YP_003706991.1| amino acid-binding ACT domain-containing protein [Methanococcus voltae A3] gi|297377863|gb|ADI36018.1| amino acid-binding ACT domain protein [Methanococcus voltae A3] Length = 144 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +T +T + ++ + +A + + ++ L G+VET +G+ Sbjct: 1 MEVTGKT---LEIMQAI----EGVCTTKDVAGKLETHPKNIDRHIRVLRDLGLVETRKGK 53 Query: 61 RGGVRLC 67 GG+ L Sbjct: 54 FGGICLT 60 >gi|315649745|ref|ZP_07902829.1| transcriptional regulator, GntR family protein [Paenibacillus vortex V453] gi|315274933|gb|EFU38309.1| transcriptional regulator, GntR family protein [Paenibacillus vortex V453] Length = 121 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 8/57 (14%) Query: 11 IRVLMYCA--------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++++ Y D + ++A I+ + + Q L + GIVET RG Sbjct: 13 LQIMTYLKKEIIIGKLQPGDKIPSVRELASELQINPNTVQRTFQELEREGIVETRRG 69 >gi|307325717|ref|ZP_07604917.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] gi|306888505|gb|EFN19491.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] Length = 277 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + VL + D P+R++ +A + + + ++LQ AG + G G + Sbjct: 26 ALEVLDAL-VQPDAPHRLADLAARTGLPKPTVHRLLQTFADAGY--AIPGPGGSYQ 78 >gi|238927173|ref|ZP_04658933.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238884955|gb|EEQ48593.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 255 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 13/59 (22%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ-------------PLVKAGIV 54 Y + + + H P + ++A+ +S +L K+ L +AG + Sbjct: 153 YLLHAMRHMEEHIAEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHL 211 >gi|25027430|ref|NP_737484.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|23492711|dbj|BAC17684.1| putative transcription regulator [Corynebacterium efficiens YS-314] Length = 147 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A P ++++ E +S+ + L+ + +AG++E R Sbjct: 76 LRILSQLAAGGCGPVSVNELTEMMGLSQPTISHHLKKMTEAGLLERTR 123 >gi|299136916|ref|ZP_07030099.1| transcriptional regulator, AraC family [Acidobacterium sp. MP5ACTX8] gi|298601431|gb|EFI57586.1| transcriptional regulator, AraC family [Acidobacterium sp. MP5ACTX8] Length = 321 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 RVL Y A H D + ++A+ IS +L + + Sbjct: 223 RVLAYIAEHLDQTITLEELAKVAEISPNYLIALFRQ 258 >gi|290969237|ref|ZP_06560762.1| biotin-(acetyl-CoA-carboxylase) ligase [Megasphaera genomosp. type_1 str. 28L] gi|290780743|gb|EFD93346.1| biotin-(acetyl-CoA-carboxylase) ligase [Megasphaera genomosp. type_1 str. 28L] Length = 328 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPAD 71 +L Y H +I+EA IS ++K ++ L G V E+ + G L + Sbjct: 5 ILDYLTAHEGEFVSGQRISEALGISRTAVWKHIKVLKARGYVIESY--TKKGYCLREAPE 62 Query: 72 QI 73 I Sbjct: 63 LI 64 >gi|24380061|ref|NP_722016.1| hypothetical protein SMU.1683c [Streptococcus mutans UA159] gi|24378053|gb|AAN59322.1|AE014997_12 conserved hypothetical protein [Streptococcus mutans UA159] Length = 307 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 12 RVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L ++ +D ++AE +S+ +++ L+ L +AGI + + GR GG+ L + Sbjct: 5 RLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGLSLMKN 64 >gi|299820925|ref|ZP_07052814.1| possible transcriptional regulator [Listeria grayi DSM 20601] gi|299817946|gb|EFI85181.1| possible transcriptional regulator [Listeria grayi DSM 20601] Length = 313 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++Y + ND ++A+ +S +++ ++ L +AGI + +GR GG+ L Sbjct: 23 MVYLLMSNDK-LSAKELADKLEVSVRSVYRYMENLSEAGIPIYASQGRNGGISL 75 >gi|228992816|ref|ZP_04152741.1| Acetoin transport repressor [Bacillus pseudomycoides DSM 12442] gi|228766865|gb|EEM15503.1| Acetoin transport repressor [Bacillus pseudomycoides DSM 12442] Length = 111 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A ++ P + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 1 MLAPNDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 45 >gi|228998861|ref|ZP_04158446.1| Acetoin transport repressor [Bacillus mycoides Rock3-17] gi|228760877|gb|EEM09838.1| Acetoin transport repressor [Bacillus mycoides Rock3-17] Length = 111 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A ++ P + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 1 MLAPNDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 45 >gi|229006380|ref|ZP_04164058.1| Acetoin transport repressor [Bacillus mycoides Rock1-4] gi|228754867|gb|EEM04234.1| Acetoin transport repressor [Bacillus mycoides Rock1-4] Length = 139 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A ++ P + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 29 MLAPNDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|163747287|ref|ZP_02154641.1| probable deoR-family transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161379397|gb|EDQ03812.1| probable deoR-family transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 229 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL 66 ++ + + ++++AE S L + + L G V + GR GGV+L Sbjct: 3 SLRRNGTSTVAELAEEVGTSRRTLLRDIAALRDEGFVIHSESGRGGGVQL 52 >gi|108803740|ref|YP_643677.1| GntR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764983|gb|ABG03865.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus DSM 9941] Length = 321 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA---DQITI 75 + I +A ++ + +++ L + G VE+ RG GV + P + + + Sbjct: 31 RPGERLPSIRALAGFLRVNRNTVARVMADLERGGYVESRRGS--GVYVVEPPAREEDLRL 88 Query: 76 LDVVKAT 82 V++ Sbjct: 89 QRVLERV 95 >gi|282865641|ref|ZP_06274692.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] gi|282559685|gb|EFB65236.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] Length = 337 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE IS + + + L + G + +G GG RL Sbjct: 36 LAERLDISPRTVRRDVDRLRELGYPIAAFKGPEGGYRL 73 >gi|73661907|ref|YP_300688.1| hypothetical protein SSP0598 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494422|dbj|BAE17743.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 230 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73 + AI + S++A +S+ + + +Q L G+ + G+ GG +L + Sbjct: 10 LVLAIQENRQITASELATDLNVSKRTILRDIQDLEDQGVKILAKHGKLGGYQLQETPNSY 69 >gi|254388869|ref|ZP_05004101.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294813165|ref|ZP_06771808.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441538|ref|ZP_08216272.1| DeoR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197702588|gb|EDY48400.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294325764|gb|EFG07407.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 320 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++A +S + + + L + G VE +G GG RL P Sbjct: 24 SELARRLEVSPRTIRRDIDRLRELGYPVEATKGPVGGYRLVAGTAMPP 71 >gi|325289433|ref|YP_004265614.1| helix-turn-helix type 11 domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964834|gb|ADY55613.1| helix-turn-helix type 11 domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 298 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + + L+Y + + + AE +S +++ ++ L +AG+ + +G Sbjct: 1 MQINRFFE-----LIYI-LLEKHTVTAVEFAERFEVSVRTIYRDVEMLSRAGVPIYMRKG 54 Query: 60 RRGGVRL 66 R GG+ L Sbjct: 55 RGGGISL 61 >gi|320530673|ref|ZP_08031719.1| transcriptional regulator, AraC family [Selenomonas artemidis F0399] gi|320137081|gb|EFW29017.1| transcriptional regulator, AraC family [Selenomonas artemidis F0399] Length = 255 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 Y + + Y H ++ + ++AE IS +L K+ Sbjct: 153 YLLHAVRYMEEHMEHSITVREVAEELGISVSYLHKLFAR 191 >gi|312794511|ref|YP_004027434.1| GntR family transcriptional regulator [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181651|gb|ADQ41821.1| transcriptional regulator, GntR family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 121 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++A+ I+ ++ Q L + G+ +T RG Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70 >gi|297563359|ref|YP_003682333.1| GntR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847807|gb|ADH69827.1| transcriptional regulator, GntR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 246 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD-VVKATEE 84 + IA IS K++ L G+V + GR G + R + D VV++ E Sbjct: 36 SVRTIAAKWKISLATATKVVGTLKAEGLVRSEPGR--GSIVTRDQAADSAKDRVVRSLEG 93 Query: 85 SF 86 Sbjct: 94 RI 95 >gi|222530313|ref|YP_002574195.1| GntR family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457160|gb|ACM61422.1| transcriptional regulator, GntR family [Caldicellulosiruptor bescii DSM 6725] Length = 121 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++A+ I+ ++ Q L + G+ +T RG Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70 >gi|291298293|ref|YP_003509571.1| transcriptional regulator TrmB [Stackebrandtia nassauensis DSM 44728] gi|290567513|gb|ADD40478.1| transcriptional regulator, TrmB [Stackebrandtia nassauensis DSM 44728] Length = 140 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 ++Y R L + AI + R+ ++A+ + + + +++ L KAG Sbjct: 37 SEY--RALCHLAISDGGRLRMQELADRTGLDQSSVSRLVHRLEKAGF 81 >gi|15678154|ref|NP_275269.1| inosine-5'-monophosphate dehydrogenase related protein VII [Methanothermobacter thermautotrophicus str. Delta H] gi|2621166|gb|AAB84632.1| inosine-5'-monophosphate dehydrogenase related protein VII [Methanothermobacter thermautotrophicus str. Delta H] Length = 302 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 11 IRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 ++ L+ + N + +IA + + +Q L G+V+ V G RGG + Sbjct: 19 LQTLINLYRNSNGKSIKGEEIAAIMNRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 74 >gi|311744600|ref|ZP_07718399.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312083|gb|EFQ82001.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 171 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 T+Y +LMY + + R+SQ+A IS L + + L + G+V+ VR Sbjct: 48 TEY--TILMYLSEAPETSLRMSQLANYVSISVSGLTRAVGRLEREGLVKRVR 97 >gi|259506424|ref|ZP_05749326.1| transcription regulator [Corynebacterium efficiens YS-314] gi|259165997|gb|EEW50551.1| transcription regulator [Corynebacterium efficiens YS-314] Length = 171 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A P ++++ E +S+ + L+ + +AG++E R Sbjct: 100 LRILSQLAAGGCGPVSVNELTEMMGLSQPTISHHLKKMTEAGLLERTR 147 >gi|218883659|ref|YP_002428041.1| regulatory protein, MarR [Desulfurococcus kamchatkensis 1221n] gi|218765275|gb|ACL10674.1| regulatory protein, MarR [Desulfurococcus kamchatkensis 1221n] Length = 161 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ I ++A IS + + L+ L + G+VE+ R G L Sbjct: 12 DEKGVTIHELASRMGISPRTIKRYLRELEEKGLVES---RDGLYLLT 55 >gi|327310413|ref|YP_004337310.1| transcriptional regulator TrmB [Thermoproteus uzoniensis 768-20] gi|326946892|gb|AEA11998.1| transcriptional regulator, TrmB [Thermoproteus uzoniensis 768-20] Length = 238 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 D I L+ P +IAE + +++ L L G VE V GR Sbjct: 15 DLAIYALLV----EKGPLTAREIAENVGVPYTKIYQHLDALEGRGFVERVEGRPARYA-A 69 Query: 68 RPADQI 73 RP ++ Sbjct: 70 RPPAEV 75 >gi|284029127|ref|YP_003379058.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283808420|gb|ADB30259.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 320 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R+L A + ++++ +S L + + L G V+T GR G RL Sbjct: 4 RMLALLATLQTGRAFSGAELSSRLGVSARTLRRDIDRLRGYGYPVDTQPGRGGFYRLT 61 >gi|269860596|ref|XP_002650018.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon bieneusi H348] gi|220066569|gb|EED44046.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon bieneusi H348] Length = 240 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +L I I I FL KIL+ L + ++++V+G Sbjct: 72 ILSLLEKSGPKGLWIKDIRIKANIPYNFLVKILKKLEQEQLIKSVKGIN 120 >gi|222476151|ref|YP_002564672.1| hypothetical protein Hlac_3260 [Halorubrum lacusprofundi ATCC 49239] gi|222454522|gb|ACM58786.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 205 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 H P ++ IAE +SE K L L G V T G G R ++ + + Sbjct: 46 HAYSPEPVAAIAERAHVSEKTARKHLNTLSDDGFVSTQPGDHGATLYSRSSESLVVEQAT 105 Query: 80 KATEE 84 EE Sbjct: 106 DILEE 110 >gi|145296508|ref|YP_001139329.1| hypothetical protein cgR_2419 [Corynebacterium glutamicum R] gi|140846428|dbj|BAF55427.1| hypothetical protein [Corynebacterium glutamicum R] Length = 164 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + ++ + R+S++AE ++ L +++ L KAG V+ Sbjct: 53 MAQISMAPERRVRMSELAELSDMTLSHLSRVVTRLEKAGWVK 94 >gi|227552401|ref|ZP_03982450.1| CBS domain transcriptional regulator [Enterococcus faecium TX1330] gi|257888358|ref|ZP_05668011.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,141,733] gi|257896752|ref|ZP_05676405.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com12] gi|293378067|ref|ZP_06624243.1| DRTGG domain protein [Enterococcus faecium PC4.1] gi|227178455|gb|EEI59427.1| CBS domain transcriptional regulator [Enterococcus faecium TX1330] gi|257824412|gb|EEV51344.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,141,733] gi|257833317|gb|EEV59738.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com12] gi|292643322|gb|EFF61456.1| DRTGG domain protein [Enterococcus faecium PC4.1] Length = 443 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 26/129 (20%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131 VV+ E L GS GL VL K +A +T S+ +V Sbjct: 77 VVRIIEGDV--------------LGGSAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121 Query: 132 RNRSSIKKI 140 NR+ ++K+ Sbjct: 122 GNRAEVQKL 130 >gi|190606488|ref|YP_001974773.1| putative replication protein [Enterococcus faecium] gi|190350258|emb|CAP62607.1| putative replication protein [Enterococcus faecium] Length = 499 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67 + ++ E I + L K+L+ L + + GR GG+ L Sbjct: 395 STKKELTERLKIPKRSLDKVLKKLREENKIHIRVRAGRNGGIMLA 439 >gi|315654739|ref|ZP_07907645.1| GntR family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|315491203|gb|EFU80822.1| GntR family transcriptional regulator [Mobiluncus curtisii ATCC 51333] Length = 120 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 16/41 (39%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ ++ + K L L + G+V + RG Sbjct: 27 ARGSQIPSVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67 >gi|312876687|ref|ZP_07736667.1| transcriptional regulator, GntR family [Caldicellulosiruptor lactoaceticus 6A] gi|311796527|gb|EFR12876.1| transcriptional regulator, GntR family [Caldicellulosiruptor lactoaceticus 6A] Length = 121 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++A+ I+ ++ Q L + G+ +T RG Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70 >gi|302524466|ref|ZP_07276808.1| predicted protein [Streptomyces sp. AA4] gi|302433361|gb|EFL05177.1| predicted protein [Streptomyces sp. AA4] Length = 247 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 23/43 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +++A +S + + + L L + G+VET RGR GG Sbjct: 42 AEQLPSEAELAAQFRVSTVTVREALAVLRQQGLVETRRGRGGG 84 >gi|108760639|ref|YP_633148.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108464519|gb|ABF89704.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 243 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 RV+ + +++I+EA +S + + L L + GI + + G GGVRL R Sbjct: 6 RVMRLLDFLRGRDGTTVAEISEALEVSARTVHRDLATLREQGIPLSSDTGPGGGVRLERD 65 >gi|304314337|ref|YP_003849484.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302587796|gb|ADL58171.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 293 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 11 IRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 ++ L+ + N + +IA + + +Q L G+V+ V G RGG + Sbjct: 10 LQTLINLYRNSNGKSIKGEEIAAIMNRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 65 >gi|293571151|ref|ZP_06682189.1| CBS domain protein [Enterococcus faecium E980] gi|291608764|gb|EFF38048.1| CBS domain protein [Enterococcus faecium E980] Length = 443 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 26/129 (20%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131 VV+ E L GS GL VL K +A +T S+ +V Sbjct: 77 VVRIIEGDV--------------LGGSAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121 Query: 132 RNRSSIKKI 140 NR+ ++K+ Sbjct: 122 GNRAEVQKL 130 >gi|257899794|ref|ZP_05679447.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com15] gi|257837706|gb|EEV62780.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com15] Length = 443 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 26/129 (20%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131 VV+ E L GS GL VL K +A +T S+ +V Sbjct: 77 VVRIIEGDV--------------LGGSAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121 Query: 132 RNRSSIKKI 140 NR+ ++K+ Sbjct: 122 GNRAEVQKL 130 >gi|302535002|ref|ZP_07287344.1| DeoR family transcriptional regulator [Streptomyces sp. C] gi|302443897|gb|EFL15713.1| DeoR family transcriptional regulator [Streptomyces sp. C] Length = 313 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + ++ L G VE G GG RL P Sbjct: 24 SELAERLGVSPRTIRRDIERLRDLGYPVEATLGAVGGYRLVAGAAMPP 71 >gi|284047051|ref|YP_003397391.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951272|gb|ADB54016.1| GntR domain protein [Conexibacter woesei DSM 14684] Length = 271 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 9/110 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---------VRLCRPAD 71 D +A A IS L + ++ L AG++ G GG + L R Sbjct: 36 GDRLPSERDLAAAMQISRPTLREAVRVLADAGVLRVRPGSAGGTFVASSYVPIELLRSKS 95 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 + + +V E + A + L +A A D Sbjct: 96 DLRLGEVAGVLEARRLIEPRVAQLAAVNAREDDFAHLARLIEAQKALLDE 145 >gi|226362775|ref|YP_002780553.1| IclR family transcriptional regulator [Rhodococcus opacus B4] gi|226241260|dbj|BAH51608.1| putative IclR family transcriptional regulator [Rhodococcus opacus B4] Length = 202 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 22/46 (47%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L A +S +A+A IS F++L + G+V+ Sbjct: 17 AVRLLRELASRPRTGATVSTLAKAVGISRPTAFRLLHSFERTGLVD 62 >gi|134099321|ref|YP_001104982.1| IclR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007292|ref|ZP_06565265.1| IclR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911944|emb|CAM02057.1| transcriptional regulator, IclR family [Saccharopolyspora erythraea NRRL 2338] Length = 264 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 24/46 (52%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L A ++ +A+A +S F++L L +AG+V+ Sbjct: 18 AVRLLRELAAQPRTGATVTTLAKATGLSRPTAFRLLYSLEQAGLVD 63 >gi|298346159|ref|YP_003718846.1| GntR-family transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|298236220|gb|ADI67352.1| GntR-family transcriptional regulator [Mobiluncus curtisii ATCC 43063] Length = 120 Score = 39.2 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 16/34 (47%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ ++ + K L L + G+V + RG Sbjct: 34 SVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67 >gi|25028961|ref|NP_739015.1| putative transcription factor [Corynebacterium efficiens YS-314] gi|259508026|ref|ZP_05750926.1| MarR family bacterial regulatory protein [Corynebacterium efficiens YS-314] gi|23494248|dbj|BAC19215.1| putative transcription factor [Corynebacterium efficiens YS-314] gi|259164367|gb|EEW48921.1| MarR family bacterial regulatory protein [Corynebacterium efficiens YS-314] Length = 173 Score = 39.2 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L ++ + R+S++AE ++ L +++ L KAG V Sbjct: 62 ALAQISMAPERRLRMSELAELSDMTLSHLSRVVTRLEKAGWVR 104 >gi|288917577|ref|ZP_06411941.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] gi|288350970|gb|EFC85183.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] Length = 337 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 L++ H + +A +S + + + L +AG+ V + G RGG+RL Sbjct: 4 LLHLQSHGGA--TAADLAARFEVSVRTVRRDVAALAQAGVPVWSEPGPRGGIRL 55 >gi|108804682|ref|YP_644619.1| GntR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765925|gb|ABG04807.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus DSM 9941] Length = 238 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%) Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------- 69 ++ ++A +S L + L+ L +G +E RG GG + +P Sbjct: 32 SLKPGEKLPAEPELAAQLGVSRTALREALKVLELSGYLEIRRGYGGGTFVAKPTVEEFKV 91 Query: 70 --ADQITILDV 78 I I +V Sbjct: 92 ITPSTIPIAEV 102 >gi|302541739|ref|ZP_07294081.1| DeoR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302459357|gb|EFL22450.1| DeoR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 341 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++ H P + +AE +S + + ++ L AG+ V TVRG GG+ L Sbjct: 7 LSIMLLLQTHGQLP--AATLAERLEVSVRTVMRDVEALSAAGVPVYTVRGPHGGIAL 61 >gi|291520570|emb|CBK75791.1| Biotin-(acetyl-CoA carboxylase) ligase [Butyrivibrio fibrisolvens 16/4] Length = 264 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 +VL Y + + IA +S ++K + L KAG ++ V G +L Sbjct: 6 KVLEYLESNKETYISGEAIASNLGLSRNAIWKAINELRKAGYAIDAV--SNKGYKLADNN 63 Query: 71 DQITILDVVKATEESF 86 D ++ ++ ++S Sbjct: 64 DILSAAGIISYLDDSL 79 >gi|239939448|ref|ZP_04691385.1| GntR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239985935|ref|ZP_04706599.1| GntR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 265 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD 71 + ++++ IS + L ++L+ L +VE+ RGR GG L R A Sbjct: 62 LVPPGERLPSERELSQHLRISRVTLREVLKVLQDQNMVESRRGRYGGTFVLPRTAA 117 >gi|315657337|ref|ZP_07910219.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491809|gb|EFU81418.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 120 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 16/34 (47%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ ++ + K L L + G+V + RG Sbjct: 34 SVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67 >gi|312199725|ref|YP_004019786.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311231061|gb|ADP83916.1| transcriptional regulator, GntR family with aminotransferase domain [Frankia sp. EuI1c] Length = 446 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 R++M A+ + ++A IS + + + L +AG V RGR G L PA Sbjct: 23 RLVMAGALPAGTRLPTVRELATELGISPTTVSQAWRTLARAG-VIAPRGRAGTFVLAGPA 81 Query: 71 D 71 Sbjct: 82 A 82 >gi|271966713|ref|YP_003340909.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509888|gb|ACZ88166.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 332 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++A+ ++ + + ++ L G V +G GG +L Sbjct: 14 RVLTLLGLLQQRQVWTGPELADRLGVTPRTVRRDVERLRTLGYPVHASQGVGGGYQLG 71 >gi|284034819|ref|YP_003384750.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283814112|gb|ADB35951.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 322 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S + + + L G V +G GG RL Sbjct: 26 LAERLEVSPRTVRRDVDRLRDLGYPVRASKGPDGGYRL 63 >gi|239941508|ref|ZP_04693445.1| IclR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239987972|ref|ZP_04708636.1| IclR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 250 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y +RVL + H + +QI+ + L +L L + G VE Sbjct: 14 YALRVLESVSKHGNG-VTDAQISRETGLPTGHLASLLLTLRREGYVE 59 >gi|304390081|ref|ZP_07372035.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326563|gb|EFL93807.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 120 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 16/34 (47%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ ++ + K L L + G+V + RG Sbjct: 34 SVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67 >gi|291442878|ref|ZP_06582268.1| GntR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291345825|gb|EFE72729.1| GntR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 232 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD 71 + ++++ IS + L ++L+ L +VE+ RGR GG L R A Sbjct: 29 LVPPGERLPSERELSQHLRISRVTLREVLKVLQDQNMVESRRGRYGGTFVLPRTAA 84 >gi|99078650|ref|YP_611908.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040] gi|99035788|gb|ABF62646.1| transcriptional regulator, AsnC family [Ruegeria sp. TM1040] Length = 152 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 32/141 (22%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L R R+L D + +AE+ +S L++ ++ L +AG+++ R Sbjct: 1 MRLDDRDR---RILTLL--QEDSRMSNADLAESVGMSASALWRRVRSLEEAGVIK----R 51 Query: 61 RGGVR----------------LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 G V L R A + + + ++A E + V EC+A+ Sbjct: 52 YGAVVVPQAMGLNFEALVQVNLTRHAPE-HLQEFIRAVEGNPHVVECYATTG-----QAD 105 Query: 105 CGLTSVLRKALNAFFDVLTQY 125 L +L L A+ L Q+ Sbjct: 106 YHLR-ILAPDLEAYNQFLEQF 125 >gi|300786223|ref|YP_003766514.1| MarR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795737|gb|ADJ46112.1| MarR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 158 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 TDYG+ L+ + RIS +A +S + +++ L + G+VE R Sbjct: 42 TDYGV--LVALSEAPGRLLRISALAATTGLSLSRISRVVDDLTRRGLVEKRR 91 >gi|239932175|ref|ZP_04689128.1| DeoR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 133 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +AE +S + + ++ L G V+ G GG RL A+ Sbjct: 22 SGADLAERLGVSPRTVRRDVERLRGLGYPVDASPGTGGGYRLGAGAE 68 >gi|69245236|ref|ZP_00603314.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium DO] gi|257880121|ref|ZP_05659774.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,230,933] gi|257882353|ref|ZP_05662006.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,502] gi|257885550|ref|ZP_05665203.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,501] gi|257891212|ref|ZP_05670865.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,410] gi|257894024|ref|ZP_05673677.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,408] gi|258614545|ref|ZP_05712315.1| CBS domain-containing protein [Enterococcus faecium DO] gi|260560270|ref|ZP_05832446.1| thioesterase superfamily protein [Enterococcus faecium C68] gi|261208206|ref|ZP_05922879.1| thioesterase superfamily protein [Enterococcus faecium TC 6] gi|289566578|ref|ZP_06446999.1| CBS domain-containing protein [Enterococcus faecium D344SRF] gi|293552927|ref|ZP_06673582.1| CBS domain protein [Enterococcus faecium E1039] gi|293560636|ref|ZP_06677123.1| CBS domain protein [Enterococcus faecium E1162] gi|293570170|ref|ZP_06681248.1| CBS domain protein [Enterococcus faecium E1071] gi|294615820|ref|ZP_06695663.1| CBS domain protein [Enterococcus faecium E1636] gi|294617809|ref|ZP_06697421.1| CBS domain protein [Enterococcus faecium E1679] gi|294623457|ref|ZP_06702309.1| CBS domain protein [Enterococcus faecium U0317] gi|314940202|ref|ZP_07847375.1| DRTGG domain protein [Enterococcus faecium TX0133a04] gi|314941740|ref|ZP_07848619.1| DRTGG domain protein [Enterococcus faecium TX0133C] gi|314947616|ref|ZP_07851025.1| DRTGG domain protein [Enterococcus faecium TX0082] gi|314950602|ref|ZP_07853682.1| DRTGG domain protein [Enterococcus faecium TX0133A] gi|314992531|ref|ZP_07857952.1| DRTGG domain protein [Enterococcus faecium TX0133B] gi|314995314|ref|ZP_07860423.1| DRTGG domain protein [Enterococcus faecium TX0133a01] gi|68195911|gb|EAN10345.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium DO] gi|257814349|gb|EEV43107.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,230,933] gi|257818011|gb|EEV45339.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,502] gi|257821406|gb|EEV48536.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,501] gi|257827572|gb|EEV54198.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,410] gi|257830403|gb|EEV57010.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,408] gi|260073615|gb|EEW61941.1| thioesterase superfamily protein [Enterococcus faecium C68] gi|260077463|gb|EEW65181.1| thioesterase superfamily protein [Enterococcus faecium TC 6] gi|289161623|gb|EFD09502.1| CBS domain-containing protein [Enterococcus faecium D344SRF] gi|291587319|gb|EFF19205.1| CBS domain protein [Enterococcus faecium E1071] gi|291591310|gb|EFF22976.1| CBS domain protein [Enterococcus faecium E1636] gi|291595920|gb|EFF27201.1| CBS domain protein [Enterococcus faecium E1679] gi|291597130|gb|EFF28329.1| CBS domain protein [Enterococcus faecium U0317] gi|291602903|gb|EFF33100.1| CBS domain protein [Enterococcus faecium E1039] gi|291605387|gb|EFF34834.1| CBS domain protein [Enterococcus faecium E1162] gi|313590471|gb|EFR69316.1| DRTGG domain protein [Enterococcus faecium TX0133a01] gi|313592991|gb|EFR71836.1| DRTGG domain protein [Enterococcus faecium TX0133B] gi|313597149|gb|EFR75994.1| DRTGG domain protein [Enterococcus faecium TX0133A] gi|313599512|gb|EFR78355.1| DRTGG domain protein [Enterococcus faecium TX0133C] gi|313640522|gb|EFS05102.1| DRTGG domain protein [Enterococcus faecium TX0133a04] gi|313645857|gb|EFS10437.1| DRTGG domain protein [Enterococcus faecium TX0082] Length = 443 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 26/129 (20%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131 VV+ E L G+ GL VL K +A +T S+ +V Sbjct: 77 VVRIIEGDV--------------LGGAAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121 Query: 132 RNRSSIKKI 140 NR+ ++K+ Sbjct: 122 GNRAEVQKL 130 >gi|325830384|ref|ZP_08163841.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] gi|325487851|gb|EGC90289.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] Length = 148 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A I+ + K+ L G VE+VRGR Sbjct: 32 QPGDQLPSVRTLAAEAAINYNTVSKVYINLEHDGYVESVRGRG 74 >gi|187925666|ref|YP_001897308.1| hypothetical protein Bphyt_3694 [Burkholderia phytofirmans PsJN] gi|187716860|gb|ACD18084.1| Helix-turn-helix type 11 domain protein [Burkholderia phytofirmans PsJN] Length = 321 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 10 GIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L + + +A+ C +S +++ + L AG+ V + RG GG RL Sbjct: 3 ASRLLSILMTLQARGRVTAQFLADECAVSLRTIYRDIDALSAAGVPVHSERGAEGGYRL 61 >gi|119717964|ref|YP_924929.1| ArsR family transcriptional regulator [Nocardioides sp. JS614] gi|119538625|gb|ABL83242.1| transcriptional regulator, ArsR family [Nocardioides sp. JS614] Length = 116 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRL 66 +R+L A H + I + E +S+ + ++ LV AG+V RGR RL Sbjct: 46 LRLLSMIAAHPEREACICDLIEPVGLSQPTVSHHMKQLVDAGLVTREQRGRWAFYRL 102 >gi|332669751|ref|YP_004452759.1| helix-turn-helix type 11 domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338789|gb|AEE45372.1| helix-turn-helix type 11 domain protein [Cellulomonas fimi ATCC 484] Length = 323 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A+ +S + + + L G V +G GG RL Sbjct: 26 LADRLGVSPRTVRRDVDRLRDLGYPVRATKGPDGGYRL 63 >gi|323483645|ref|ZP_08089029.1| LysR family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323692609|ref|ZP_08106841.1| hypothetical protein HMPREF9475_01704 [Clostridium symbiosum WAL-14673] gi|323403072|gb|EGA95386.1| LysR family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323503306|gb|EGB19136.1| hypothetical protein HMPREF9475_01704 [Clostridium symbiosum WAL-14673] Length = 312 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKA-GIVETVRGRRGGVRLCRPADQ--ITILDVV 79 I++ A++ IS+ +L KI++ L A G V R RGGV L + I +++ Sbjct: 18 RLGSINKAAQSLFISQPYLGKIIKELENAVGAVLFQR-TRGGVSLTPDGEDFMIHAENII 76 Query: 80 KATE 83 + E Sbjct: 77 REVE 80 >gi|304314072|ref|YP_003849219.1| phosphate transport system regulator [Methanothermobacter marburgensis str. Marburg] gi|302587531|gb|ADL57906.1| predicted phosphate transport system regulator [Methanothermobacter marburgensis str. Marburg] Length = 303 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P+ +IAE I+ ++ K+LQPL+K G+V Sbjct: 20 ENPSTQDEIAERLGITRRYVTKLLQPLIKEGVVR 53 >gi|83644372|ref|YP_432807.1| ribonuclease BN-like family protein [Hahella chejuensis KCTC 2396] gi|83632415|gb|ABC28382.1| ribonuclease BN-like family protein [Hahella chejuensis KCTC 2396] Length = 455 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 10/119 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILDV 78 IS + + + + +I+ L+K G V + G + RP D+IT+ ++ Sbjct: 334 QQGGGESISDLEDTLSVGPETIQRIIDKLLKKG-VLAIMGDEADSLIPARPLDRITLAEL 392 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 + H + L + ++ + A L Q ++ VR ++ Sbjct: 393 MHVLRSP--------EHSLPASLYSDKSVDAIAKGVTAAMEASLGQMTLAAWVRGEETV 443 >gi|331700323|ref|YP_004336562.1| helix-turn-helix, type 11 [Pseudonocardia dioxanivorans CB1190] gi|326955012|gb|AEA28709.1| helix-turn-helix, type 11 [Pseudonocardia dioxanivorans CB1190] Length = 318 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 10 GIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 RVL + P ++A+ + + + ++ L + G+ V RGR GG RL Sbjct: 5 ASRVLALLELLQARPGITGPELAQRLDVDARTVRRHVRTLEELGVPVVASRGRYGGYRL 63 >gi|317489632|ref|ZP_07948136.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316911226|gb|EFV32831.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 148 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A I+ + K+ L G VE+VRGR Sbjct: 32 QPGDQLPSVRTLAAEAAINYNTVSKVYINLEHDGYVESVRGRG 74 >gi|255523133|ref|ZP_05390105.1| transcriptional regulator, DeoR family [Clostridium carboxidivorans P7] gi|255513248|gb|EET89516.1| transcriptional regulator, DeoR family [Clostridium carboxidivorans P7] Length = 253 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 ++ + ++ +++E +SE + K LQ L + G ++ GG L R Sbjct: 14 LNENGRVKVKELSERFNVSEGMVRKDLQRLERDG---AIQRTYGGAILSR 60 >gi|19553711|ref|NP_601713.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62391351|ref|YP_226753.1| MarR family regulatory protein [Corynebacterium glutamicum ATCC 13032] gi|21325282|dbj|BAB99904.1| Transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41326692|emb|CAF21174.1| Bacterial regulatory protein, MarR family [Corynebacterium glutamicum ATCC 13032] Length = 164 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 24/42 (57%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + ++ ++ R+S++AE ++ L +++ L KAG V+ Sbjct: 53 MAQISMAPEHRVRMSELAELSDMTLSHLSRVVTRLEKAGWVK 94 >gi|88856946|ref|ZP_01131597.1| GntR family transcriptional regulator [marine actinobacterium PHSC20C1] gi|88813822|gb|EAR23693.1| GntR family transcriptional regulator [marine actinobacterium PHSC20C1] Length = 258 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--ITILDV 78 D ++ E +S + + L L G V+ GR GG + RP + TILDV Sbjct: 48 GDRLPTERELIEQLGVSRATVREALMLLESDGFVQMRAGRHGGAYVTRPKIERLATILDV 107 Query: 79 VKATE 83 + + E Sbjct: 108 ILSVE 112 >gi|297162155|gb|ADI11867.1| DeoR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 346 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +AE +S + + + L + G + V+G GG RL Sbjct: 26 LAERLEVSPRTVRRDVDRLRELGYPILAVKGPDGGYRLG 64 >gi|271966560|ref|YP_003340756.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509735|gb|ACZ88013.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 337 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE IS + + + L + G + +G GG RL Sbjct: 26 LAERLDISPRTVRRDVDRLRELGYPIVAFKGPDGGYRL 63 >gi|152965599|ref|YP_001361383.1| GntR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360116|gb|ABS03119.1| regulatory protein GntR HTH [Kineococcus radiotolerans SRS30216] Length = 251 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 17/36 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +A +S L + L L AG VE RGR GG Sbjct: 62 RDLATRLGVSRATLREALAALHAAGWVEVRRGRSGG 97 >gi|116334317|ref|YP_795844.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116099664|gb|ABJ64813.1| transcriptional regulator, ArsR family [Lactobacillus brevis ATCC 367] Length = 296 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + ++ ++ P + ++A+ +S + K L L A +V + R Sbjct: 16 LSSEVR--LHIIRLI---SEKPMSVKELAQELGLSSAIVTKHLDKLAAAELVTSKR 66 >gi|197121885|ref|YP_002133836.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp. K] gi|196171734|gb|ACG72707.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp. K] Length = 330 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 VL + A D I++ ++ ++K + L G ++ V R G RL D Sbjct: 12 VLAFLAEAGDEVVSGEAISDKLGLTRAAVWKHVNALRARGYRIDAVPAR--GYRLAEVPD 69 Query: 72 QIT------------ILDVVKATEE 84 ++T + V+ A EE Sbjct: 70 RLTALELRPLLNTHDLGQVLHAYEE 94 >gi|89093966|ref|ZP_01166911.1| transcriptional regulator, GntR family protein [Oceanospirillum sp. MED92] gi|89081852|gb|EAR61079.1| transcriptional regulator, GntR family protein [Oceanospirillum sp. MED92] Length = 244 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +D ++A+ +S + + L+ L ++ + RG GG Sbjct: 33 DDRLPTEDELAKRFQVSRPTIREALKRLAAKNLIRSRRGPTGG 75 >gi|291444952|ref|ZP_06584342.1| IclR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291347899|gb|EFE74803.1| IclR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 252 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y +RVL + H + +QI+ + L +L L + G VE Sbjct: 16 YALRVLESVSKHGNG-VTDAQISRETGLPTGHLASLLLTLRREGYVE 61 >gi|297193524|ref|ZP_06910922.1| GntR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718202|gb|EDY62110.1| GntR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 132 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R + D ++ EA I+ + K + L + G+VE RG Sbjct: 17 QIVQQTRQALR--LGLLEPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 72 >gi|16801302|ref|NP_471570.1| hypothetical protein lin2237 [Listeria innocua Clip11262] gi|16414750|emb|CAC97466.1| lin2237 [Listeria innocua Clip11262] Length = 233 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L DYG+RV A+ +A+ S+ + K+L L + GI+E+ + Sbjct: 155 LNTMIDYGLRV-SEKAVELPKFLTYQILADNSNTSKSYTSKVLSNLREKGILESQK 209 >gi|325002721|ref|ZP_08123833.1| iron dependent repressor [Pseudonocardia sp. P1] Length = 226 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ + A + +S +AE +S +++ LV+AG+V+ R G+ L Sbjct: 5 LKTIFLLAERWEGSVGVSALAERLGVSSPSASGMVRKLVEAGLVDHAR--YAGITLTPSG 62 Query: 71 DQITILDVVK 80 + + L VV+ Sbjct: 63 RE-SALAVVR 71 >gi|89894887|ref|YP_518374.1| hypothetical protein DSY2141 [Desulfitobacterium hafniense Y51] gi|89334335|dbj|BAE83930.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 337 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +P Q+AE +SE + K L+ L +AG+V + R Sbjct: 271 HPYCTQQLAEMYNLSEATVSKHLKILSRAGLVYSQR 306 >gi|146308325|ref|YP_001188790.1| GntR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576526|gb|ABP86058.1| transcriptional regulator, GntR family [Pseudomonas mendocina ymp] Length = 251 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 15/112 (13%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 + S I E +S + + L L AG+VET G G R+ Sbjct: 36 RGEKLPTESAIMEEQGVSRTVVREALSRLQAAGLVETRHGIGTFVLDTPSASGFRI--DP 93 Query: 71 DQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 I T+ D++ E + S + L ++ R+AL+A + Sbjct: 94 ATIVTLRDILAILELRISLE--VESAGMAAQRRSEAQLKAI-REALDAINES 142 >gi|329903089|ref|ZP_08273363.1| Transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] gi|327548498|gb|EGF33167.1| Transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] Length = 211 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Query: 5 KRTDYG-IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + + Y +R ++ CA+ R +++A +S+ + L L + G+V + R Sbjct: 2 RESAYAQLRADILSCALPPGAEIREAELAARFQVSKSPVRDALMRLEREGLVIST--PRQ 59 Query: 63 GVRLCRPADQITILDV 78 G R+ I++ DV Sbjct: 60 GYRVAP----ISVTDV 71 >gi|315222688|ref|ZP_07864577.1| DeoR-like helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188374|gb|EFU22100.1| DeoR-like helix-turn-helix protein [Streptococcus anginosus F0211] Length = 299 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 ++AE +S +++ + L AGI + T++GR GG+RL Sbjct: 19 VTAKELAEQFEVSVRTIYRDVDRLSSAGIPIYTMQGRDGGIRLTED 64 >gi|117929059|ref|YP_873610.1| GntR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649522|gb|ABK53624.1| transcriptional regulator, GntR family [Acidothermus cellulolyticus 11B] Length = 252 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++A +S L + + L +AG++E RGR GG Sbjct: 52 GERLPPERELAARLRVSRATLREAIGALREAGMIEVHRGRGGG 94 >gi|332361889|gb|EGJ39692.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK355] Length = 311 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 L D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 7 LFDILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|297538320|ref|YP_003674089.1| transcriptional regulator, DeoR family [Methylotenera sp. 301] gi|297257667|gb|ADI29512.1| transcriptional regulator, DeoR family [Methylotenera sp. 301] Length = 260 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 ++ +H R Q+AE +SE+ L + L K G++ R GG L Sbjct: 12 MITAVLHARGECRTRQLAEQFNLSEMTLRRDFHTLEKRGLL---RRVHGGAVL 61 >gi|218533385|ref|YP_002424200.1| hypothetical protein Mchl_5534 [Methylobacterium chloromethanicum CM4] gi|218525688|gb|ACK86272.1| Helix-turn-helix type 11 domain protein [Methylobacterium chloromethanicum CM4] Length = 239 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66 A+ + + ++++AE S + + + L AG ++ + GR GG+RL Sbjct: 13 ALRRNGTSTVAELAEQIGASRRTVLRDIGALRDAGHVIHSDVGRGGGLRL 62 >gi|307325855|ref|ZP_07605055.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] gi|306888643|gb|EFN19629.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] Length = 347 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +AE +S + + + L + G + ++G GG RL Sbjct: 36 LAERLEVSPRTVRRDVDRLRELGYPIAAIKGPDGGYRLG 74 >gi|145589725|ref|YP_001156322.1| GntR family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048131|gb|ABP34758.1| transcriptional regulator, GntR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 221 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 2 HLTKRTDY--GI-RVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L RTDY + + L+ ++ +IAE +S L + + L+ L G V Sbjct: 7 KLPARTDYVEAVYKALLDAISDGSLPPGTRITQEEIAEQMNVSRLPVLQALRMLKNDGFV 66 Query: 55 ETVRGRR 61 E GR Sbjct: 67 EDAPGRG 73 >gi|300781149|ref|ZP_07091003.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030] gi|300532856|gb|EFK53917.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 10/82 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----- 55 M +T+ TD R L+ A+ P ++++AE I+ + + L L+ G+ E Sbjct: 1 MAVTRSTDGETRRLIMSAMLTSRPVTVAELAEKVGITPAGVRRHLDKLLAEGLAELAEAD 60 Query: 56 ----TVRGRRGG-VRLCRPADQ 72 RGR +L R + Sbjct: 61 TAGPATRGRPAKYYQLTRDGRE 82 >gi|226312088|ref|YP_002771982.1| BirA bifunctional protein [Brevibacillus brevis NBRC 100599] gi|226095036|dbj|BAH43478.1| BirA bifunctional protein [Brevibacillus brevis NBRC 100599] Length = 327 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78 ++++ C S ++K ++ L + G VE VR + G RL D+++ ++ Sbjct: 14 QPGSFISGEELSQTCGCSRTAVWKHIEELRRDGYEVEAVR--KSGYRLLVAPDRLSAAEI 71 Query: 79 VKATE 83 + E Sbjct: 72 MAGLE 76 >gi|254390482|ref|ZP_05005698.1| helix-turn-helix domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197704185|gb|EDY49997.1| helix-turn-helix domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 336 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + ++++ +SE + L L AG+ V +V+GR GG RL Sbjct: 19 ILLLLQRREQVTAAEVSRELDVSERTARRDLDALAMAGVPVYSVQGRGGGWRL 71 >gi|29830235|ref|NP_824869.1| DeoR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29607346|dbj|BAC71404.1| putative DeoR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 330 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++++ +S + + + L + G V+ +G GG RL P Sbjct: 26 ELSDRLGVSRRTVRRDIDRLRELGYPVQATKGSDGGYRLVAGKAMPP 72 >gi|332977033|gb|EGK13842.1| transcriptional regulator [Desmospora sp. 8437] Length = 325 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +L+ IH ++E +S+ + + ++ L AG+ V RG GG RL Sbjct: 9 ILLLLQIHG--RMTAKSLSERLEVSQRTIHRDMEALSAAGVPVVAERGAGGGWRL 61 >gi|120402033|ref|YP_951862.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1] gi|119954851|gb|ABM11856.1| transcriptional regulator, IclR family [Mycobacterium vanbaalenii PYR-1] Length = 266 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 5 KRTDYGIRV---LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ +R L Y A D P R+ +I++A + +L+ LV G V + Sbjct: 9 RKVKSAVRTVELLEYLAARPDDPARLREISDALDMPRSSAHALLRTLVCQGWVRS 63 >gi|89067712|ref|ZP_01155166.1| putative transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89046682|gb|EAR52737.1| putative transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 268 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 I + P + ++A + + LF++LQ LV+ G V + G+ G L Sbjct: 40 IEAMADL----GEPAPLREVARVTGLPKGTLFRVLQTLVQLGYVNQI-GKTGSYHLS 91 >gi|228996205|ref|ZP_04155852.1| Xylan 1,4-beta-xylosidase [Bacillus mycoides Rock3-17] gi|228763523|gb|EEM12423.1| Xylan 1,4-beta-xylosidase [Bacillus mycoides Rock3-17] Length = 768 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58 +R++ Y H P + IAE +S +L K L + ++R Sbjct: 105 LRIITYIEDHYKEPITLQAIAEREFLSIPYLSKFFSDNIGLNFQSYLTSIR 155 >gi|323703327|ref|ZP_08114977.1| putative signal transduction protein with CBS domains [Desulfotomaculum nigrificans DSM 574] gi|323531690|gb|EGB21579.1| putative signal transduction protein with CBS domains [Desulfotomaculum nigrificans DSM 574] Length = 211 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-- 58 M L+KR + ++ + + P QIAE ++ L L L AG++E Sbjct: 1 MELSKRQE----AILEI-VKKNGPITGEQIAEQLNLTRATLRPDLSILTMAGLLEARPRV 55 Query: 59 -----GRRGGVRLCRPADQITILDV 78 G+ L +I + DV Sbjct: 56 GYFYSGKTADRVLADKITRIKVGDV 80 >gi|294816758|ref|ZP_06775400.1| Putative DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321573|gb|EFG03708.1| Putative DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 350 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + ++++ +SE + L L AG+ V +V+GR GG RL Sbjct: 33 ILLLLQRREQVTAAEVSRELDVSERTARRDLDALAMAGVPVYSVQGRGGGWRL 85 >gi|114764332|ref|ZP_01443560.1| transcriptional regulator, GntR family protein [Pelagibaca bermudensis HTCC2601] gi|114543280|gb|EAU46297.1| transcriptional regulator, GntR family protein [Roseovarius sp. HTCC2601] Length = 249 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 D +++AE +S + + L+ L ++ T RG GG Sbjct: 31 GDRLPSEAELAEQYGVSRPTVREALKRLAAQSLIRTQRGATGG 73 >gi|13541208|ref|NP_110896.1| transcription regulator [Thermoplasma volcanium GSS1] gi|14324596|dbj|BAB59523.1| leucine-responsive regulatory protein [Lrp] [Thermoplasma volcanium GSS1] Length = 175 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R L+ D + + +I+E I + KI++ L + GI++ Sbjct: 16 LRELID-----DSRSSVEEISERTGIGRNTVSKIIKDLERNGIIK 55 >gi|169629651|ref|YP_001703300.1| ArsR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169241618|emb|CAM62646.1| Putative transcriptional regulator, ArsR family [Mycobacterium abscessus] Length = 119 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++++ D +AE ++E + + L +AG+VE+ R Sbjct: 45 VKIMSELFGAPDGEVISGDLAELLGLTESTVSHHMNQLRRAGLVESDR 92 >gi|19704584|ref|NP_604146.1| DeoR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327695|ref|ZP_06870236.1| DeoR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714876|gb|AAL95445.1| Transcriptional regulator, DeoR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155181|gb|EFG95957.1| DeoR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 314 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y R +Q+A+ +S +++ + L AGI + T +G+ GG+ + + Sbjct: 22 FRILYYI--LEKGKVRANQLADRFEVSVRTIYRDIDSLSSAGIPIYTTQGKGGGIEIAKD 79 >gi|320010220|gb|ADW05070.1| regulatory protein DeoR [Streptomyces flavogriseus ATCC 33331] Length = 344 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE I+ + + + L + G + +G GG RL Sbjct: 30 DLAERLDITPRTVRRDIDRLRELGYPIRAFKGPSGGYRL 68 >gi|75762096|ref|ZP_00742001.1| Transcriptional regulator, DeoR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490414|gb|EAO53725.1| Transcriptional regulator, DeoR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 320 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 2 HLTKRTDYGIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 HL+K IR+L + +IA+ IS + + + L G+ + +G Sbjct: 3 HLSK----AIRLLDILIFASAKEAFTAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQG 58 Query: 60 RRGGVR 65 R GG + Sbjct: 59 RNGGYK 64 >gi|332668950|ref|YP_004451958.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484] gi|332337988|gb|AEE44571.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484] Length = 315 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++A +SE + L L AG+ V +V+GR GG RL Sbjct: 11 LLLQQRRQVTAAEVARELEVSERTARRDLDALATAGVPVYSVQGRGGGWRL 61 >gi|302552118|ref|ZP_07304460.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302469736|gb|EFL32829.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 363 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT M H P S++A SE + + L+ L +AG+V + R Sbjct: 284 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRALRTLREAGLVRSAR 336 >gi|158424068|ref|YP_001525360.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330957|dbj|BAF88442.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 240 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 18/115 (15%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +IA +S + + + L +G+VE +RGR+G V Sbjct: 48 LEPGSRLDEQEIAARYGVSRTPVREAFRLLAASGLVE-LRGRQG--------------AV 92 Query: 79 VKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY-SIECL 130 V++ + + A + C + + +T L A + L Q +++ + Sbjct: 93 VRSIGAHALIEMFQVMAEMEGLCARLAARRITPAQMDKLRAIHEKLEQVATLKDI 147 >gi|86158810|ref|YP_465595.1| biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775321|gb|ABC82158.1| Biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 330 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 VL + A D I++ ++ ++K + L G ++ V R G RL D Sbjct: 12 VLAFLAEAGDEVVSGEAISDKLGLTRAAVWKHVNALRARGYRIDAVPAR--GYRLAEVPD 69 Query: 72 QITILDV 78 ++T L++ Sbjct: 70 RLTALEL 76 >gi|311106752|ref|YP_003979605.1| transcriptional regulator family protein 20 [Achromobacter xylosoxidans A8] gi|310761441|gb|ADP16890.1| bacterial transcriptional regulator family protein 20 [Achromobacter xylosoxidans A8] Length = 277 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 + VL + A +P ++Q+A+ + + L ++L + +AG V Sbjct: 31 ALVVLDHLARAQ-HPPTLAQLAQRLDMPKTTLMRLLAAMQRAGYVAAT 77 >gi|307323628|ref|ZP_07602838.1| conserved hypothetical protein [Streptomyces violaceusniger Tu 4113] gi|306891117|gb|EFN22093.1| conserved hypothetical protein [Streptomyces violaceusniger Tu 4113] Length = 101 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--- 67 + AI D+ R+ IA C ++E + KI+ L + G + VR GR R+ Sbjct: 4 HARVLIAIFEDHTIRVRDIAARCQLTERAVQKIIADLEEGGYLTHVRQGRSNVYRIAPDT 63 Query: 68 --RPADQI--TILDVVKAT 82 R + T+ D++ Sbjct: 64 PLRHPADVGATVADLLSLL 82 >gi|323358032|ref|YP_004224428.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274403|dbj|BAJ74548.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 331 Score = 38.8 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 D+P + +A IS+ + + + L + G +E+ G GG RL Sbjct: 19 ARRDWPGSV--LASRLGISDRTVRRDIDRLREMGYRIESTMGPDGGYRL 65 >gi|19552097|ref|NP_600099.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389760|ref|YP_225162.1| regulatory protein, arsR fam [Corynebacterium glutamicum ATCC 13032] gi|145295041|ref|YP_001137862.1| hypothetical protein cgR_0985 [Corynebacterium glutamicum R] gi|21323637|dbj|BAB98264.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41325095|emb|CAF19576.1| Bacterial regulatory protein, arsR fam [Corynebacterium glutamicum ATCC 13032] gi|140844961|dbj|BAF53960.1| hypothetical protein [Corynebacterium glutamicum R] Length = 104 Score = 38.8 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 Y IR L A +N+ + QI + + + + L+ L K G+V + R Sbjct: 24 YRIRALEIIATNNE--VSVGQITKEMDLEASHVSQHLKVLRKFGLVSSQR 71 >gi|145224639|ref|YP_001135317.1| regulatory protein, ArsR [Mycobacterium gilvum PYR-GCK] gi|315444971|ref|YP_004077850.1| ArsR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145217125|gb|ABP46529.1| transcriptional regulator, ArsR family [Mycobacterium gilvum PYR-GCK] gi|315263274|gb|ADU00016.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1] Length = 114 Score = 38.8 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 R+ + +H +S +A A SE + + L+ L + G V + R GR RL Sbjct: 42 RLEILLCLHRAPGICVSDLAAALGRSENTVSQALRVLRQQGWVTSTRAGRSVTYRL 97 >gi|329119608|ref|ZP_08248289.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327464205|gb|EGF10509.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 151 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPA 70 LM + ++ +S++A+ IS+ L L L A +V+ R R RL Sbjct: 46 HRLMLLCLLSEGQRSVSELADILGISQTTLSNHLTKLRDAKLVDYNRYHRILEYRLA-AP 104 Query: 71 DQITILDVV 79 + TILDV+ Sbjct: 105 EAQTILDVL 113 >gi|269793583|ref|YP_003313038.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269095768|gb|ACZ20204.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 327 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE IS + + + L + G ++ G GG RL Sbjct: 25 LAERLGISHRTVRRDVDRLREMGYSIQATMGPDGGYRL 62 >gi|240169428|ref|ZP_04748087.1| putative transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 257 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL--- 66 +L H +++ +I E ++ + +IL L G+V + RG RG RL Sbjct: 21 AAEILRVLQAHPGGLSQV-EIGERVGMARSTVSRILNALEDEGLVAS-RGVRGPYRLGPE 78 Query: 67 -CRPADQITI 75 R A + + Sbjct: 79 IARMASTVRL 88 >gi|239981033|ref|ZP_04703557.1| DeoR family transcriptional regulator [Streptomyces albus J1074] gi|291452898|ref|ZP_06592288.1| DeoR-family transcriptional regulator [Streptomyces albus J1074] gi|291355847|gb|EFE82749.1| DeoR-family transcriptional regulator [Streptomyces albus J1074] Length = 347 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +AE +S + + + L + G + ++G GG RL Sbjct: 26 LAERLDVSPRTVRRDIDRLRELGYPIAALKGPDGGYRLG 64 >gi|119872239|ref|YP_930246.1| transcriptional regulator, TrmB [Pyrobaculum islandicum DSM 4184] gi|119673647|gb|ABL87903.1| transcriptional regulator, TrmB [Pyrobaculum islandicum DSM 4184] Length = 117 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70 + ++ + S+IA + + + K L+ L +AG VE RGR V L R Sbjct: 52 KAILRLLVERQGAVYQSEIARELGLPKSTVHKALRRLSEAGYVEIQRRGRFNLVVLKRVT 111 Query: 71 DQITI 75 ++++ Sbjct: 112 SEVSV 116 >gi|328883954|emb|CCA57193.1| Transcriptional regulator, GntR family [Streptomyces venezuelae ATCC 10712] Length = 138 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R M D ++ EA I+ + K + L + G+VE RG Sbjct: 27 QIVQQTKQALR--MGLLEPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 82 >gi|268608907|ref|ZP_06142634.1| biotin/acetyl-CoA-carboxylase ligase [Ruminococcus flavefaciens FD-1] Length = 327 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPADQITI 75 A + + IAE +S ++K ++ L G V E+V + G RL +++I+ Sbjct: 11 LAEADGGYISGAAIAEKLGVSRNAVWKTVKALEADGFVIESVTSK--GYRLSADSNRIS- 67 Query: 76 LDVV 79 D++ Sbjct: 68 ADLI 71 >gi|55376149|ref|YP_134005.1| hypothetical protein pNG2005 [Haloarcula marismortui ATCC 43049] gi|55228874|gb|AAV44299.1| unknown [Haloarcula marismortui ATCC 43049] Length = 107 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 R+L + A ++D ++I EA I + +L L G+V RGR Sbjct: 26 RILTFLAANDDQAFTQTEIYEATDIPRGSVGVVLSRLEDRGLVR-HRGR 73 >gi|21221635|ref|NP_627414.1| DeoR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|7799520|emb|CAB90984.1| putative deoR-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 323 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G V+ G GG RL P Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72 >gi|21220658|ref|NP_626437.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|256788196|ref|ZP_05526627.1| transcriptional regulator [Streptomyces lividans TK24] gi|289772091|ref|ZP_06531469.1| transcriptional regulator [Streptomyces lividans TK24] gi|5578866|emb|CAB51268.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289702290|gb|EFD69719.1| transcriptional regulator [Streptomyces lividans TK24] Length = 327 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 9 MVLLLQSRPTMTAAELARELEVSERTVTRDAQALSEAGVPVYAERGRAGGYRL 61 >gi|332668482|ref|YP_004451498.1| IclR family transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332337527|gb|AEE54625.1| transcriptional regulator, IclR family [Haliscomenobacter hydrossis DSM 1100] Length = 234 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M A N +++IA+ +++ I + LV G +E + G++ G RL A ++T Sbjct: 1 MLVAQRNGQSITLTEIADELQLNQATAANINKTLVHKGYLEHI-GKKKGYRLGPAAYRLT 59 >gi|289771072|ref|ZP_06530450.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] gi|289701271|gb|EFD68700.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] Length = 323 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G V+ G GG RL P Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72 >gi|296504571|ref|YP_003666271.1| acetoin transport repressor [Bacillus thuringiensis BMB171] gi|296325623|gb|ADH08551.1| acetoin transport repressor [Bacillus thuringiensis BMB171] Length = 195 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ ++ +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 82 LKSML---APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 129 >gi|260889450|ref|ZP_05900713.1| putative transcriptional regulator [Leptotrichia hofstadii F0254] gi|260860861|gb|EEX75361.1| putative transcriptional regulator [Leptotrichia hofstadii F0254] Length = 297 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + + ++Y + ++AE +S +++ + L AGI V RG Sbjct: 1 MKINRLFE-----IVYL-LLEKKTITAKELAEHFEVSVRTIYRDIDILSSAGIPVYFQRG 54 Query: 60 RRGGVRL 66 + GG++L Sbjct: 55 KSGGIKL 61 >gi|228922829|ref|ZP_04086127.1| Acetoin transport repressor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836884|gb|EEM82227.1| Acetoin transport repressor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|225388883|ref|ZP_03758607.1| hypothetical protein CLOSTASPAR_02623 [Clostridium asparagiforme DSM 15981] gi|225045056|gb|EEG55302.1| hypothetical protein CLOSTASPAR_02623 [Clostridium asparagiforme DSM 15981] Length = 248 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 6 RTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQP 47 ++ Y + + Y A H +D I+ IA + +SE L + + Sbjct: 142 KSKYVLEAMNYIAEHYSDSDISITPIARSLGVSESHLSHVFKK 184 >gi|325002162|ref|ZP_08123274.1| IclR family transcriptional regulator [Pseudonocardia sp. P1] Length = 266 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 13/81 (16%) Query: 4 TKRTDY-------GIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVE 55 + R DY G+RVL A P + IA+ +S+ ++ L +AG + Sbjct: 3 SHRGDYTIESLARGLRVLT--AFGPARPEMSLQDIADHVDVSKAGALRLGHTLCEAGFLV 60 Query: 56 TVRGRRGGVRLCRPADQITIL 76 V G G RL IT+ Sbjct: 61 RV-GDGRGYRLG--PTAITVG 78 >gi|319938936|ref|ZP_08013300.1| helix-turn-helix type 11 domain-containing protein [Streptococcus anginosus 1_2_62CV] gi|319811986|gb|EFW08252.1| helix-turn-helix type 11 domain-containing protein [Streptococcus anginosus 1_2_62CV] Length = 299 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 ++AE +S +++ + L AGI + T++GR GG+RL Sbjct: 19 VTARELAEQFEVSVRTIYRDVDRLSSAGIPIYTMQGRDGGIRLTED 64 >gi|229192289|ref|ZP_04319254.1| Acetoin transport repressor [Bacillus cereus ATCC 10876] gi|228591239|gb|EEK49093.1| Acetoin transport repressor [Bacillus cereus ATCC 10876] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|150399141|ref|YP_001322908.1| helix-turn-helix type 11 domain-containing protein [Methanococcus vannielii SB] gi|150011844|gb|ABR54296.1| Helix-turn-helix type 11 domain protein [Methanococcus vannielii SB] Length = 87 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 13/88 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ + +L + +IA + + ++ L G V+T +G+ Sbjct: 1 MKIDGITEQILTIL-------EKYTTTKEIAMELKTHPKNIDRYIRVLRDLGFVDTKKGK 53 Query: 61 RGGVRLCRPA------DQITILDVVKAT 82 GGV L I ++ +++ Sbjct: 54 TGGVFLTNEGKYVLKKKNINLITILEKV 81 >gi|229019289|ref|ZP_04176115.1| Acetoin transport repressor [Bacillus cereus AH1273] gi|229025533|ref|ZP_04181943.1| Acetoin transport repressor [Bacillus cereus AH1272] gi|228735815|gb|EEL86400.1| Acetoin transport repressor [Bacillus cereus AH1272] gi|228741974|gb|EEL92148.1| Acetoin transport repressor [Bacillus cereus AH1273] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|229098547|ref|ZP_04229488.1| Acetoin transport repressor [Bacillus cereus Rock3-29] gi|228684869|gb|EEL38806.1| Acetoin transport repressor [Bacillus cereus Rock3-29] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|229075785|ref|ZP_04208762.1| Acetoin transport repressor [Bacillus cereus Rock4-18] gi|229104684|ref|ZP_04235346.1| Acetoin transport repressor [Bacillus cereus Rock3-28] gi|229117573|ref|ZP_04246945.1| Acetoin transport repressor [Bacillus cereus Rock1-3] gi|228665893|gb|EEL21363.1| Acetoin transport repressor [Bacillus cereus Rock1-3] gi|228678748|gb|EEL32963.1| Acetoin transport repressor [Bacillus cereus Rock3-28] gi|228707337|gb|EEL59533.1| Acetoin transport repressor [Bacillus cereus Rock4-18] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|228987268|ref|ZP_04147389.1| Acetoin transport repressor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157661|ref|ZP_04285736.1| Acetoin transport repressor [Bacillus cereus ATCC 4342] gi|228625618|gb|EEK82370.1| Acetoin transport repressor [Bacillus cereus ATCC 4342] gi|228772497|gb|EEM20942.1| Acetoin transport repressor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|229168821|ref|ZP_04296540.1| Acetoin transport repressor [Bacillus cereus AH621] gi|228614669|gb|EEK71775.1| Acetoin transport repressor [Bacillus cereus AH621] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|217961570|ref|YP_002340140.1| transcriptional regulator, GntR family [Bacillus cereus AH187] gi|222097527|ref|YP_002531584.1| acetoin transport repressor [Bacillus cereus Q1] gi|228909908|ref|ZP_04073729.1| Acetoin transport repressor [Bacillus thuringiensis IBL 200] gi|229140813|ref|ZP_04269358.1| Acetoin transport repressor [Bacillus cereus BDRD-ST26] gi|217064553|gb|ACJ78803.1| transcriptional regulator, GntR family [Bacillus cereus AH187] gi|221241585|gb|ACM14295.1| Acetoin transport repressor [Bacillus cereus Q1] gi|228642603|gb|EEK98889.1| Acetoin transport repressor [Bacillus cereus BDRD-ST26] gi|228849743|gb|EEM94576.1| Acetoin transport repressor [Bacillus thuringiensis IBL 200] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|220914463|ref|YP_002489772.1| MarR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861341|gb|ACL41683.1| transcriptional regulator, MarR family [Arthrobacter chlorophenolicus A6] Length = 161 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 28/131 (21%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ DY + + + +S++A S L ++ L K G VE R Sbjct: 38 KLSLF-DYTVLAM--LSESEQRFLPMSELAARTSASLSRLSHVVTKLQKRGWVE--RRPH 92 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 + + TEE A ++ N F D Sbjct: 93 --------PRDARV-TIAHLTEEGMSTIVGLAPGHVE--------------DVRNLFLDA 129 Query: 122 LTQYSIECLVR 132 LT+ +E L R Sbjct: 130 LTEEDVEDLAR 140 >gi|206976317|ref|ZP_03237225.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97] gi|206745513|gb|EDZ56912.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|220916677|ref|YP_002491981.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954531|gb|ACL64915.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 330 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 VL + A D I++ ++ ++K + L G ++ V R G RL D Sbjct: 12 VLAFLAEAGDEVVSGEAISDKLGLTRAAVWKHVNALRARGYRIDAVPAR--GYRLAEVPD 69 Query: 72 QITILDV 78 ++T L++ Sbjct: 70 RLTALEL 76 >gi|157146924|ref|YP_001454243.1| hypothetical protein CKO_02700 [Citrobacter koseri ATCC BAA-895] gi|157084129|gb|ABV13807.1| hypothetical protein CKO_02700 [Citrobacter koseri ATCC BAA-895] Length = 475 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A+ + P ++A IS + + L + G +E+ +G Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAAVLKISRTTVASAMAQLREEGYLESRQGSG 87 >gi|75762409|ref|ZP_00742279.1| Acetoin transport repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490102|gb|EAO53448.1| Acetoin transport repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 350 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 242 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 284 >gi|241896467|ref|ZP_04783763.1| iron-dependent repressor [Weissella paramesenteroides ATCC 33313] gi|241870447|gb|EER74198.1| iron-dependent repressor [Weissella paramesenteroides ATCC 33313] Length = 218 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T Y ++ ++ + D +IS QIAE ++ + +L L +AG V+ V Sbjct: 6 SKTQY-LQTILELSG-GDESTKISNNQIAEHLNVTPSSVSNMLAKLQEAGEVDVV--PYY 61 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL-RKALNAFFDV 121 GV L +P + T L +++ S + E F + K+ + + L A + F + Sbjct: 62 GVTLTKPGRE-TALRLIR----SHRLIETFGATKLGLSISEAHSNADHLDHDANDQFINA 116 Query: 122 LTQY 125 L +Y Sbjct: 117 LDKY 120 >gi|256833672|ref|YP_003162399.1| transcriptional regulator, ArsR family [Jonesia denitrificans DSM 20603] gi|256687203|gb|ACV10096.1| transcriptional regulator, ArsR family [Jonesia denitrificans DSM 20603] Length = 129 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 IR+L A + + + ++ + EA + L + L L K +V + R L Sbjct: 27 IRILELLA--DGHEHTVTALQEATGLEASHLSQHLSVLRKHQLVVSTRRASHVYYLIAFP 84 Query: 71 DQITILDVVKAT 82 + +L V + Sbjct: 85 EVADLLTVARTL 96 >gi|206971251|ref|ZP_03232202.1| transcriptional regulator, GntR family [Bacillus cereus AH1134] gi|218231377|ref|YP_002368881.1| transcriptional regulator, GntR family [Bacillus cereus B4264] gi|218899238|ref|YP_002447649.1| transcriptional regulator, GntR family [Bacillus cereus G9842] gi|228902587|ref|ZP_04066738.1| Acetoin transport repressor [Bacillus thuringiensis IBL 4222] gi|228941228|ref|ZP_04103781.1| Acetoin transport repressor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954362|ref|ZP_04116388.1| Acetoin transport repressor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228967110|ref|ZP_04128146.1| Acetoin transport repressor [Bacillus thuringiensis serovar sotto str. T04001] gi|228974160|ref|ZP_04134730.1| Acetoin transport repressor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980752|ref|ZP_04141057.1| Acetoin transport repressor [Bacillus thuringiensis Bt407] gi|229047769|ref|ZP_04193349.1| Acetoin transport repressor [Bacillus cereus AH676] gi|229071581|ref|ZP_04204799.1| Acetoin transport repressor [Bacillus cereus F65185] gi|229081334|ref|ZP_04213837.1| Acetoin transport repressor [Bacillus cereus Rock4-2] gi|229111550|ref|ZP_04241101.1| Acetoin transport repressor [Bacillus cereus Rock1-15] gi|229152279|ref|ZP_04280472.1| Acetoin transport repressor [Bacillus cereus m1550] gi|229180357|ref|ZP_04307700.1| Acetoin transport repressor [Bacillus cereus 172560W] gi|206734023|gb|EDZ51194.1| transcriptional regulator, GntR family [Bacillus cereus AH1134] gi|218159334|gb|ACK59326.1| transcriptional regulator, GntR family [Bacillus cereus B4264] gi|218543282|gb|ACK95676.1| transcriptional regulator, GntR family [Bacillus cereus G9842] gi|228603104|gb|EEK60582.1| Acetoin transport repressor [Bacillus cereus 172560W] gi|228631241|gb|EEK87877.1| Acetoin transport repressor [Bacillus cereus m1550] gi|228671932|gb|EEL27225.1| Acetoin transport repressor [Bacillus cereus Rock1-15] gi|228701956|gb|EEL54439.1| Acetoin transport repressor [Bacillus cereus Rock4-2] gi|228711517|gb|EEL63474.1| Acetoin transport repressor [Bacillus cereus F65185] gi|228723561|gb|EEL74926.1| Acetoin transport repressor [Bacillus cereus AH676] gi|228778921|gb|EEM27183.1| Acetoin transport repressor [Bacillus thuringiensis Bt407] gi|228785500|gb|EEM33509.1| Acetoin transport repressor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792479|gb|EEM40045.1| Acetoin transport repressor [Bacillus thuringiensis serovar sotto str. T04001] gi|228805294|gb|EEM51887.1| Acetoin transport repressor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818387|gb|EEM64459.1| Acetoin transport repressor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228857028|gb|EEN01537.1| Acetoin transport repressor [Bacillus thuringiensis IBL 4222] gi|326941851|gb|AEA17747.1| acetoin transport repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|118469920|ref|YP_885183.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171207|gb|ABK72103.1| putative transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 254 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R+L A ++AE +S L L PL +AG++E GR GG Sbjct: 16 RILSMLAQGMLRPGSRLGTEREMAETFAVSRSTLRSALLPLSQAGVLERRTGRNGG 71 >gi|47568131|ref|ZP_00238835.1| acetoin transport repressor [Bacillus cereus G9241] gi|47555121|gb|EAL13468.1| acetoin transport repressor [Bacillus cereus G9241] Length = 139 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A + P + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 29 MLAPRDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|328880685|emb|CCA53924.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae ATCC 10712] Length = 326 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + ++++A +S + L+ L AGI V + RGR GG L Sbjct: 16 LQTRTRVTVAEVAAELEVSPRTARRDLEALSTAGIPVYSQRGRGGGWSL 64 >gi|323441258|gb|EGA98930.1| transcriptional regulator [Staphylococcus aureus O46] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|323440335|gb|EGA98048.1| transcriptional regulator [Staphylococcus aureus O11] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|298693401|gb|ADI96623.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus ED133] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|283469376|emb|CAQ48587.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus ST398] Length = 246 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67 >gi|282915467|ref|ZP_06323239.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] gi|283767878|ref|ZP_06340793.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|282320570|gb|EFB50908.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] gi|283461757|gb|EFC08841.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|257435194|ref|ZP_05611245.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282912992|ref|ZP_06320784.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus M899] gi|257285790|gb|EEV15906.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282323092|gb|EFB53411.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus M899] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|229174753|ref|ZP_04302277.1| Acetoin transport repressor [Bacillus cereus MM3] gi|228608743|gb|EEK66041.1| Acetoin transport repressor [Bacillus cereus MM3] Length = 139 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|257424274|ref|ZP_05600703.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426950|ref|ZP_05603352.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429588|ref|ZP_05605975.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257432235|ref|ZP_05608598.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|282902726|ref|ZP_06310619.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus C160] gi|282907127|ref|ZP_06314975.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282907470|ref|ZP_06315312.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912373|ref|ZP_06320169.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282921408|ref|ZP_06329126.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C427] gi|282922619|ref|ZP_06330309.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C101] gi|283959583|ref|ZP_06377024.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus A017934/97] gi|293498046|ref|ZP_06665900.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293511635|ref|ZP_06670329.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] gi|293550245|ref|ZP_06672917.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus M1015] gi|297589119|ref|ZP_06947760.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|304380096|ref|ZP_07362817.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|257273292|gb|EEV05394.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276581|gb|EEV08032.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280069|gb|EEV10656.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257283114|gb|EEV13246.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|282314840|gb|EFB45226.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C101] gi|282315823|gb|EFB46207.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C427] gi|282324069|gb|EFB54385.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328375|gb|EFB58646.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330026|gb|EFB59547.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282597185|gb|EFC02144.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus C160] gi|283789175|gb|EFC28002.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290919292|gb|EFD96368.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus M1015] gi|291096977|gb|EFE27235.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291465593|gb|EFF08125.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] gi|297577630|gb|EFH96343.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|302750016|gb|ADL64193.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341332|gb|EFM07250.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436754|gb|ADQ75825.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|148266561|ref|YP_001245504.1| regulatory protein GntR, HTH [Staphylococcus aureus subsp. aureus JH9] gi|150392600|ref|YP_001315275.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH1] gi|257794484|ref|ZP_05643463.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407555|ref|ZP_05680691.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258419828|ref|ZP_05682790.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258443885|ref|ZP_05692223.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258445085|ref|ZP_05693322.1| GntR family transcriptional regulator [Staphylococcus aureus A6300] gi|258447689|ref|ZP_05695828.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455687|ref|ZP_05703642.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282894358|ref|ZP_06302588.1| regulatory protein GntR, HTH [Staphylococcus aureus A8117] gi|282928388|ref|ZP_06335991.1| regulatory protein GntR, HTH [Staphylococcus aureus A10102] gi|295405406|ref|ZP_06815216.1| regulatory protein GntR [Staphylococcus aureus A8819] gi|297244743|ref|ZP_06928623.1| regulatory protein GntR [Staphylococcus aureus A8796] gi|147739630|gb|ABQ47928.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus JH9] gi|149945052|gb|ABR50988.1| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus JH1] gi|257788456|gb|EEV26796.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840780|gb|EEV65237.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257844110|gb|EEV68497.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257850769|gb|EEV74713.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257855993|gb|EEV78912.1| GntR family transcriptional regulator [Staphylococcus aureus A6300] gi|257858971|gb|EEV81835.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257861899|gb|EEV84672.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282589972|gb|EFB95055.1| regulatory protein GntR, HTH [Staphylococcus aureus A10102] gi|282763403|gb|EFC03533.1| regulatory protein GntR, HTH [Staphylococcus aureus A8117] gi|294969481|gb|EFG45500.1| regulatory protein GntR [Staphylococcus aureus A8819] gi|297178260|gb|EFH37507.1| regulatory protein GntR [Staphylococcus aureus A8796] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|57652483|ref|YP_185024.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87162100|ref|YP_492854.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193910|ref|YP_498696.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220291|ref|YP_001331114.1| hypothetical protein NWMN_0079 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508404|ref|YP_001574063.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730488|ref|ZP_04864653.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733763|ref|ZP_04867928.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258424250|ref|ZP_05687131.1| transcriptional regulator [Staphylococcus aureus A9635] gi|258438657|ref|ZP_05689880.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258452282|ref|ZP_05700296.1| transcriptional regulator [Staphylococcus aureus A5948] gi|269201787|ref|YP_003281056.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282923798|ref|ZP_06331475.1| transcriptional regulator [Staphylococcus aureus A9765] gi|294849071|ref|ZP_06789815.1| transcriptional regulator [Staphylococcus aureus A9754] gi|297209364|ref|ZP_06925762.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911363|ref|ZP_07128812.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|57286669|gb|AAW38763.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus COL] gi|87128074|gb|ABD22588.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201468|gb|ABD29278.1| transcriptional regulator, GntR family, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373091|dbj|BAF66351.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367213|gb|ABX28184.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725781|gb|EES94510.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728230|gb|EES96959.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257845516|gb|EEV69549.1| transcriptional regulator [Staphylococcus aureus A9635] gi|257848216|gb|EEV72208.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257860119|gb|EEV82953.1| transcriptional regulator [Staphylococcus aureus A5948] gi|262074077|gb|ACY10050.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282593040|gb|EFB98041.1| transcriptional regulator [Staphylococcus aureus A9765] gi|294823963|gb|EFG40388.1| transcriptional regulator [Staphylococcus aureus A9754] gi|296885825|gb|EFH24760.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887542|gb|EFK82738.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|320139470|gb|EFW31342.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus MRSA131] gi|320142127|gb|EFW33946.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus MRSA177] Length = 251 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72 >gi|49482378|ref|YP_039602.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|221142229|ref|ZP_03566722.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|295426680|ref|ZP_06819319.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|49240507|emb|CAG39164.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|269939662|emb|CBI48030.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus TW20] gi|295129132|gb|EFG58759.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|315194591|gb|EFU24980.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus CGS00] gi|329312834|gb|AEB87247.1| Transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] Length = 246 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67 >gi|21281838|ref|NP_644924.1| hypothetical protein MW0109 [Staphylococcus aureus subsp. aureus MW2] gi|49485013|ref|YP_042234.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82749848|ref|YP_415589.1| transcriptional regulator [Staphylococcus aureus RF122] gi|262049772|ref|ZP_06022637.1| hypothetical protein SAD30_1871 [Staphylococcus aureus D30] gi|262052078|ref|ZP_06024288.1| hypothetical protein SA930_0182 [Staphylococcus aureus 930918-3] gi|284023145|ref|ZP_06377543.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|296277192|ref|ZP_06859699.1| GntR family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|21203273|dbj|BAB93974.1| MW0109 [Staphylococcus aureus subsp. aureus MW2] gi|49243456|emb|CAG41877.1| GntR family regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655379|emb|CAI79762.1| probable transcriptional regulator [Staphylococcus aureus RF122] gi|259160056|gb|EEW45090.1| hypothetical protein SA930_0182 [Staphylococcus aureus 930918-3] gi|259162162|gb|EEW46739.1| hypothetical protein SAD30_1871 [Staphylococcus aureus D30] gi|302331883|gb|ADL22076.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus JKD6159] gi|315196447|gb|EFU26797.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|329731630|gb|EGG67990.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus 21189] gi|329732570|gb|EGG68920.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus 21193] Length = 246 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67 >gi|15923125|ref|NP_370659.1| hypothetical protein SAV0135 [Staphylococcus aureus subsp. aureus Mu50] gi|15925839|ref|NP_373372.1| hypothetical protein SA0130 [Staphylococcus aureus subsp. aureus N315] gi|156978465|ref|YP_001440724.1| hypothetical protein SAHV_0134 [Staphylococcus aureus subsp. aureus Mu3] gi|253316251|ref|ZP_04839464.1| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255004932|ref|ZP_05143533.2| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus Mu50-omega] gi|13700051|dbj|BAB41350.1| SA0130 [Staphylococcus aureus subsp. aureus N315] gi|14245902|dbj|BAB56297.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|156720600|dbj|BAF77017.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|285815860|gb|ADC36347.1| Predicted regulator for deoxynucleoside utilization, GntR family [Staphylococcus aureus 04-02981] gi|312828652|emb|CBX33494.1| bacterial regulatory proteins, gntR family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129116|gb|EFT85112.1| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus CGS03] gi|329725661|gb|EGG62140.1| transcriptional regulator, GntR family [Staphylococcus aureus subsp. aureus 21172] Length = 246 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +S + L + ++ L + GIVE+ RG+ Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67 >gi|163941819|ref|YP_001646703.1| GntR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864016|gb|ABY45075.1| transcriptional regulator, GntR family [Bacillus weihenstephanensis KBAB4] Length = 139 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|325964900|ref|YP_004242806.1| hypothetical protein Asphe3_35710 [Arthrobacter phenanthrenivorans Sphe3] gi|323470987|gb|ADX74672.1| hypothetical protein Asphe3_35710 [Arthrobacter phenanthrenivorans Sphe3] Length = 120 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67 + AI D RI +A ++E KI LV+AG + R GRR + Sbjct: 26 HAHVLLAIARDPQIRIRDVAARVGVTERAAQKITADLVEAGYLTRTREGRRNSYTVA 82 >gi|311068758|ref|YP_003973681.1| hypothetical protein BATR1942_09085 [Bacillus atrophaeus 1942] gi|310869275|gb|ADP32750.1| hypothetical protein BATR1942_09085 [Bacillus atrophaeus 1942] Length = 327 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%) Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70 L+ + D +I++A S ++K ++ L G VE VR + G RL + Sbjct: 9 LIDLFSKAGDEFISGQKISDALGCSRTAVWKHIEELRNEGYEVEAVRRK--GYRLVKKPG 66 Query: 71 ----DQITIL 76 +I Sbjct: 67 KLSESEIRFG 76 >gi|297157413|gb|ADI07125.1| transcriptional regulator, ArsR family protein [Streptomyces bingchenggensis BCW-1] Length = 296 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H P+ +Q+A +S + + L L AG+V + R Sbjct: 235 LLAHTSSPSTTTQLAARTGLSPGAVSQHLAVLRDAGLVTSHR 276 >gi|256787173|ref|ZP_05525604.1| DeoR family transcriptional regulator [Streptomyces lividans TK24] Length = 330 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G V+ G GG RL P Sbjct: 33 ELADRLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 79 >gi|269957905|ref|YP_003327694.1| Helix-turn-helix type 11 domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269306586|gb|ACZ32136.1| Helix-turn-helix type 11 domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 329 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A +S + + + L + G V+ +G GG RL Sbjct: 26 LAGRLGVSPRTVRRDVDRLRELGYPVQATKGPDGGYRL 63 >gi|326445658|ref|ZP_08220392.1| DeoR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 326 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + ++++ +SE + L L AG+ V +V+GR GG RL Sbjct: 9 ILLLLQRREQVTAAEVSRELDVSERTARRDLDALAMAGVPVYSVQGRGGGWRL 61 >gi|218463580|ref|ZP_03503671.1| transcriptional regulator, AsnC family protein [Rhizobium etli Kim 5] Length = 147 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 33/146 (22%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL----C 67 R+L + P+ +++AE +S + + ++ L + G+++ G + Sbjct: 11 RILTELTRNGRIPH--AELAEKVHLSRNAVRQRIERLERDGLIQ-------GYTIVVGEG 61 Query: 68 RP-ADQITI------------LDVVKATEESFFVAEC-FASHKID----CPLVGSCGLTS 109 +P A IT DV++ + V C S + D + + Sbjct: 62 KPRAAAITAMIFVYRHDRMRGGDVIQTLKGIPEVISCDIMSGEFDLVVRVEASAADRIRE 121 Query: 110 VLRK--ALNAFFDVLTQYSIECLVRN 133 + ++ AL D LT +++ +++ Sbjct: 122 IWQEVSALQGVRDTLTAFALSSMIKR 147 >gi|210622694|ref|ZP_03293316.1| hypothetical protein CLOHIR_01264 [Clostridium hiranonis DSM 13275] gi|210154095|gb|EEA85101.1| hypothetical protein CLOHIR_01264 [Clostridium hiranonis DSM 13275] Length = 316 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + ++M N+ +I +IA +S + + L +AGI + + G+ GG + Sbjct: 7 ALNMVMLL--QNNGKMKIEEIARELEVSNRQVQEYKSELEQAGIFINSQSGKYGGYSIA 63 >gi|90410043|ref|ZP_01218060.1| melibiose operon regulator [Photobacterium profundum 3TCK] gi|90329396|gb|EAS45653.1| melibiose operon regulator [Photobacterium profundum 3TCK] Length = 335 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 3 LTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 L+K + Y ++L Y A H+D P + QIA+ + + I Q + Sbjct: 193 LSKHSQFYVSQMLEYIASHHDTPLTVKQIADHVGLHANYAMGIFQRM 239 >gi|30264154|ref|NP_846531.1| GntR family transcriptional regulator [Bacillus anthracis str. Ames] gi|47529593|ref|YP_020942.1| GntR family transcriptional regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186985|ref|YP_030237.1| GntR family transcriptional regulator [Bacillus anthracis str. Sterne] gi|65321471|ref|ZP_00394430.1| COG1725: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165871133|ref|ZP_02215783.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0488] gi|167633670|ref|ZP_02391994.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0442] gi|167639464|ref|ZP_02397735.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0193] gi|170687247|ref|ZP_02878465.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0465] gi|170705838|ref|ZP_02896301.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0389] gi|177652641|ref|ZP_02935057.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0174] gi|190566154|ref|ZP_03019073.1| transcriptional regulator, GntR family [Bacillus anthracis Tsiankovskii-I] gi|227816856|ref|YP_002816865.1| transcriptional regulator, GntR family [Bacillus anthracis str. CDC 684] gi|229602570|ref|YP_002868378.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0248] gi|254683846|ref|ZP_05147706.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. CNEVA-9066] gi|254721681|ref|ZP_05183470.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. A1055] gi|254736193|ref|ZP_05193899.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Western North America USA6153] gi|254744082|ref|ZP_05201765.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Kruger B] gi|254754138|ref|ZP_05206173.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Vollum] gi|254758172|ref|ZP_05210199.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Australia 94] gi|30258799|gb|AAP28017.1| transcriptional regulator, GntR family [Bacillus anthracis str. Ames] gi|47504741|gb|AAT33417.1| transcriptional regulator, GntR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49180912|gb|AAT56288.1| transcriptional regulator, GntR family [Bacillus anthracis str. Sterne] gi|164713052|gb|EDR18579.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0488] gi|167512523|gb|EDR87898.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0193] gi|167531076|gb|EDR93763.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0442] gi|170129378|gb|EDS98242.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0389] gi|170668864|gb|EDT19609.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0465] gi|172081976|gb|EDT67044.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0174] gi|190563073|gb|EDV17039.1| transcriptional regulator, GntR family [Bacillus anthracis Tsiankovskii-I] gi|227006038|gb|ACP15781.1| transcriptional regulator, GntR family [Bacillus anthracis str. CDC 684] gi|229266978|gb|ACQ48615.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0248] Length = 139 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|298247835|ref|ZP_06971640.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297550494|gb|EFH84360.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 320 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +L H+ ++A + + + +Q L + G+ VE RG GG RL Sbjct: 9 LTILELLQTHSQ--MSGEEMARRLEVEPRTVRRYIQMLQEMGMPVEGARGPGGGYRL 63 >gi|118591285|ref|ZP_01548683.1| regulatory protein GntR, HTH [Stappia aggregata IAM 12614] gi|118435957|gb|EAV42600.1| regulatory protein GntR, HTH [Stappia aggregata IAM 12614] Length = 243 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + + +AE +S + + L+ L ++ + RG GG Sbjct: 33 EERLPSEADLAERFGVSRSTVREALKRLAAQNLIRSERGSSGG 75 >gi|332669373|ref|YP_004452381.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484] gi|332338411|gb|AEE44994.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484] Length = 400 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + ++ R++ +A ++ + + + L G+V V GGV L RP D DV Sbjct: 29 LRHEGTVRVTDLAARLDVTPVTARRDVTRLAGEGLVHRV---HGGVTLDRPDDA--AGDV 83 Query: 79 VKATE 83 +A E Sbjct: 84 GRAVE 88 >gi|300784983|ref|YP_003765274.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794497|gb|ADJ44872.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] Length = 327 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A +SE + + + L + G V+ V+G GG RL Sbjct: 31 LAGRLGVSERTVRRDVDRLRELGYPVQAVKGPDGGYRL 68 >gi|298246252|ref|ZP_06970058.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer DSM 44963] gi|297553733|gb|EFH87598.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer DSM 44963] Length = 133 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + ++ + A + ++ + IS+ + L+ L +AG+++T R Sbjct: 39 LTIVYHLARQPE--ISVTDLTAMLNISQPLVSWHLRKLRRAGLIQTRR 84 >gi|108761446|ref|YP_628384.1| hypothetical protein MXAN_0101 [Myxococcus xanthus DK 1622] gi|108465326|gb|ABF90511.1| hypothetical protein MXAN_0101 [Myxococcus xanthus DK 1622] Length = 374 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G R++ + ++E S + + +++ LV G VE V G+R G RL R Sbjct: 159 GCRIVRTLLQSPGEAQTVRALSERTQTSYSYAYGVVRHLVLDGYVEPV-GKRSGFRL-RA 216 Query: 70 A 70 Sbjct: 217 P 217 >gi|329934388|ref|ZP_08284467.1| MarR family transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329305984|gb|EGG49839.1| MarR family transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 163 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R L A H + P R+ ++E I+ I+ L + G+VE VR Sbjct: 59 LRALRMLA-HAERPLRMRDLSERAGIAARTATTIVDSLERDGLVERVR 105 >gi|302527361|ref|ZP_07279703.1| DeoR family transcriptional regulator [Streptomyces sp. AA4] gi|302436256|gb|EFL08072.1| DeoR family transcriptional regulator [Streptomyces sp. AA4] Length = 349 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S + + + L + G + T +G GG RL Sbjct: 43 LAERLEVSPRTVRRDVDRLRELGYPIVTTKGPDGGYRL 80 >gi|190574077|ref|YP_001971922.1| putative ArsR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011999|emb|CAQ45621.1| putative ArsR family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 221 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 18/111 (16%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + ++AE +S + LQ L +AG+V+T R G L R D + +++ A Sbjct: 41 VERLAELTGLSVANTSQHLQQLRRAGLVQTRR--DGKRILYRSGDG-PLGNLLAAL---- 93 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 D + V+ +L D L ++E L+ RSS+ Sbjct: 94 ----------RDYADHQRSEMHGVIHDSLQR-RDALEGLTVEQLLEQRSSV 133 >gi|169630560|ref|YP_001704209.1| IclR family regulatory protein [Mycobacterium abscessus ATCC 19977] gi|169242527|emb|CAM63555.1| Putative regulatory protein, IclR family [Mycobacterium abscessus] Length = 296 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 ++L + A P +++IAEA ++ ILQ L +AG + Sbjct: 11 AAQILDHLAGRPTLPLSMTEIAEAVGVNPASTLAILQALTEAGYI 55 >gi|119383854|ref|YP_914910.1| GntR domain-containing protein [Paracoccus denitrificans PD1222] gi|119373621|gb|ABL69214.1| transcriptional regulator, GntR family [Paracoccus denitrificans PD1222] Length = 251 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-----AD 71 A+ ++ ++A IS + + L+ L ++ + RG GG + RP A Sbjct: 30 LAV-DERLPTEEELARRFAISRPTVREALKVLAAQNLIRSRRGPAGGTFVNRPDADGAAR 88 Query: 72 QIT 74 IT Sbjct: 89 SIT 91 >gi|120403273|ref|YP_953102.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1] gi|119956091|gb|ABM13096.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii PYR-1] Length = 282 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + ++A +S + + ++ L AG + + RGR GG + DV Sbjct: 83 RPGESLPPERELATRLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFIADALPAPRTGDV 142 >gi|229013287|ref|ZP_04170428.1| Acetoin transport repressor [Bacillus mycoides DSM 2048] gi|229061750|ref|ZP_04199083.1| Acetoin transport repressor [Bacillus cereus AH603] gi|229134886|ref|ZP_04263693.1| Acetoin transport repressor [Bacillus cereus BDRD-ST196] gi|228648561|gb|EEL04589.1| Acetoin transport repressor [Bacillus cereus BDRD-ST196] gi|228717496|gb|EEL69160.1| Acetoin transport repressor [Bacillus cereus AH603] gi|228748054|gb|EEL97918.1| Acetoin transport repressor [Bacillus mycoides DSM 2048] Length = 139 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|228960343|ref|ZP_04121996.1| Acetoin transport repressor [Bacillus thuringiensis serovar pakistani str. T13001] gi|229129357|ref|ZP_04258328.1| Acetoin transport repressor [Bacillus cereus BDRD-Cer4] gi|229146651|ref|ZP_04275018.1| Acetoin transport repressor [Bacillus cereus BDRD-ST24] gi|228636821|gb|EEK93284.1| Acetoin transport repressor [Bacillus cereus BDRD-ST24] gi|228653962|gb|EEL09829.1| Acetoin transport repressor [Bacillus cereus BDRD-Cer4] gi|228799367|gb|EEM46331.1| Acetoin transport repressor [Bacillus thuringiensis serovar pakistani str. T13001] Length = 139 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|228935398|ref|ZP_04098216.1| Acetoin transport repressor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229198200|ref|ZP_04324909.1| Acetoin transport repressor [Bacillus cereus m1293] gi|228585360|gb|EEK43469.1| Acetoin transport repressor [Bacillus cereus m1293] gi|228824150|gb|EEM69964.1| Acetoin transport repressor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 139 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|42783192|ref|NP_980439.1| GntR family transcriptional regulator [Bacillus cereus ATCC 10987] gi|42739120|gb|AAS43047.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987] Length = 139 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|85707140|ref|ZP_01038227.1| transcriptional regulator, ArsR family protein [Roseovarius sp. 217] gi|85668299|gb|EAQ23173.1| transcriptional regulator, ArsR family protein [Roseovarius sp. 217] Length = 221 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 16/133 (12%) Query: 8 DYGIRV--------LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR- 58 +Y + LM + +A ++ + LQ L +AG+V + R Sbjct: 12 EYALIAQALAAPARLMLLEQLAQTEASVETLAHKTGLTVANTSQHLQQLRRAGLVTSRRA 71 Query: 59 GRRGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 G+ L R A IT++ ++ E + L G L +A A Sbjct: 72 GKTVIYAL-RDARTITLMGLMSEVAETNLAQVTVILDG-----LSGDAPTPEPLTRAELA 125 Query: 118 FFDVLTQYSIECL 130 + ++ + Sbjct: 126 ERLTIGAVTLLDI 138 >gi|330504546|ref|YP_004381415.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918832|gb|AEB59663.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 251 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 15/112 (13%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 + S I E +S + + L L AG+VET G G R+ Sbjct: 36 RGEKLPTESAIMEEQGVSRTVVREALSRLQAAGLVETRHGIGTFVLDTPSASGFRI--DP 93 Query: 71 DQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 I T+ DV+ E + S + L ++ R+AL+A + Sbjct: 94 ATIVTLRDVLAILELRISLE--VESAGMAAARRSDAQLKAI-REALDAINES 142 >gi|150402245|ref|YP_001329539.1| BadM/Rrf2 family transcriptional regulator [Methanococcus maripaludis C7] gi|150033275|gb|ABR65388.1| transcriptional regulator, BadM/Rrf2 family [Methanococcus maripaludis C7] Length = 144 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ ++L + + +IA + + ++ L G +ET +G+ Sbjct: 1 MKIDGLTE---KILTLL----EKYSTTREIAAELETHPKNIDRYIRVLRDLGFIETKKGK 53 Query: 61 RGGVRLC 67 GGV L Sbjct: 54 TGGVFLT 60 >gi|145596645|ref|YP_001160942.1| helix-turn-helix, type 11 domain-containing protein [Salinispora tropica CNB-440] gi|145305982|gb|ABP56564.1| Helix-turn-helix, type 11 domain protein [Salinispora tropica CNB-440] Length = 332 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + +++A +SE +++ + L AG+ V +GR GG RL Sbjct: 19 MVLLLQARGAMTAAELAGEVGVSERTVYRDIIALAAAGVPVYAEQGRHGGYRL 71 >gi|111224921|ref|YP_715715.1| DeoR family transcriptional regulator [Frankia alni ACN14a] gi|111152453|emb|CAJ64189.1| Putative DeoR family transcriptional regulator [Frankia alni ACN14a] Length = 374 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ I +++ +QIA +S+ + + L L + G+ + + RG Sbjct: 1 MRASRL--IAITMML----QAHERLTAAQIAGRLGVSDRTVRRDLDVLGELGVPLYSERG 54 Query: 60 RRGGVRL 66 R GG RL Sbjct: 55 RGGGWRL 61 >gi|52141415|ref|YP_085413.1| GntR family transcriptional regulator [Bacillus cereus E33L] gi|196034945|ref|ZP_03102352.1| transcriptional regulator, GntR family [Bacillus cereus W] gi|228916717|ref|ZP_04080282.1| Acetoin transport repressor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228947797|ref|ZP_04110084.1| Acetoin transport repressor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123600|ref|ZP_04252795.1| Acetoin transport repressor [Bacillus cereus 95/8201] gi|51974884|gb|AAU16434.1| transcriptional regulator, GntR family [Bacillus cereus E33L] gi|195992484|gb|EDX56445.1| transcriptional regulator, GntR family [Bacillus cereus W] gi|228659735|gb|EEL15380.1| Acetoin transport repressor [Bacillus cereus 95/8201] gi|228811784|gb|EEM58118.1| Acetoin transport repressor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842904|gb|EEM87987.1| Acetoin transport repressor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 139 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|46908368|ref|YP_014757.1| hypothetical protein LMOf2365_2166 [Listeria monocytogenes serotype 4b str. F2365] gi|47091802|ref|ZP_00229597.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|226224739|ref|YP_002758846.1| hypothetical protein Lm4b_02156 [Listeria monocytogenes Clip81459] gi|254825305|ref|ZP_05230306.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254853260|ref|ZP_05242608.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254931756|ref|ZP_05265115.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254992818|ref|ZP_05275008.1| hypothetical protein LmonocytoFSL_07044 [Listeria monocytogenes FSL J2-064] gi|300764060|ref|ZP_07074056.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|46881639|gb|AAT04934.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019813|gb|EAL10551.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|225877201|emb|CAS05915.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606617|gb|EEW19225.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293583311|gb|EFF95343.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293594551|gb|EFG02312.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300515401|gb|EFK42452.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|328465940|gb|EGF37121.1| hypothetical protein LM1816_07768 [Listeria monocytogenes 1816] gi|332312583|gb|EGJ25678.1| hypothetical protein LMOSA_1210 [Listeria monocytogenes str. Scott A] Length = 236 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 13/62 (20%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56 L+ ++G+R+ ++ + + +A+ S+ + K+L L + GI+E+ Sbjct: 155 LSTMIEFGLRI-------SEKIVELPEFLTYQILADHANTSKSYTSKVLGHLREEGILES 207 Query: 57 VR 58 R Sbjct: 208 QR 209 >gi|217968106|ref|YP_002353612.1| hypothetical protein Dtur_1726 [Dictyoglomus turgidum DSM 6724] gi|217337205|gb|ACK42998.1| conserved hypothetical protein [Dictyoglomus turgidum DSM 6724] Length = 195 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--- 57 M LT+R ++ L N P ++IA+ +S + I+Q L K G VE V Sbjct: 1 MSLTERRRQFLQALENLYKKNKRPIHYAEIAKELSVSPATAYDIMQALYKNGYVEAVYLE 60 Query: 58 ------RGRR 61 RGR Sbjct: 61 NSVNNKRGRG 70 >gi|93006292|ref|YP_580729.1| ArsR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393970|gb|ABE75245.1| transcriptional regulator, ArsR family [Psychrobacter cryohalolentis K5] Length = 129 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 26/105 (24%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L++ T ++ H +IA + + L L +AG V + R Sbjct: 13 LSQETR--LKAFRLLVSHEPLGLPAGEIARQLSVPHNTMSTHLSVLARAGWVISER---- 66 Query: 63 GVRLCRPADQITILDVVKA--------TEESFFVAECFASHKIDC 99 + QI + +A E F + +C + H C Sbjct: 67 ------QSRQI----IYRASLSHMQTVIE--FLLQDCCSGHPELC 99 >gi|219669340|ref|YP_002459775.1| ArsR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539600|gb|ACL21339.1| transcriptional regulator, ArsR family [Desulfitobacterium hafniense DCB-2] Length = 350 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +P Q+AE +SE + K L+ L +AG+V + R Sbjct: 271 HPYCTQQLAEMYNLSEATVSKHLKVLSRAGLVYSQR 306 >gi|313889724|ref|ZP_07823366.1| transcriptional regulator, MarR family [Streptococcus pseudoporcinus SPIN 20026] gi|313121769|gb|EFR44866.1| transcriptional regulator, MarR family [Streptococcus pseudoporcinus SPIN 20026] Length = 150 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 VL++ + + + + I IS+ +++ + K G ++ + Sbjct: 37 HVLIFLSRNVERELFVKDIETELGISKSVASNLVKRMEKNGFIKVIP----------SQT 86 Query: 72 QITILDVVKA---TEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDV 121 VV A E+ + EC + + + C + V+ + D Sbjct: 87 DKRYKQVVMAEKGVEKLPLLQECRKDVENYFFKEISMEEFCVVRKVIDQLKQNMLDY 143 >gi|317050680|ref|YP_004111796.1| biotin/acetyl-CoA-carboxylase ligase [Desulfurispirillum indicum S5] gi|316945764|gb|ADU65240.1| biotin/acetyl-CoA-carboxylase ligase [Desulfurispirillum indicum S5] Length = 336 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +L + H D +++ IS + K + L AG +E+ + G + Sbjct: 13 HILQHLWQHQDQWVSGEELSGQLGISRTAINKHIGHLRSAGYTIESS--PKKGYQ 65 >gi|221218218|ref|YP_002524245.1| regulatory protein, GntR:Bacterial regulatory protein, GntR [Rhodobacter sphaeroides KD131] gi|221163245|gb|ACM04211.1| regulatory protein, GntR:Bacterial regulatory protein, GntR [Rhodobacter sphaeroides KD131] Length = 267 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 IR + AI PN Q+A IS + + L+ L ++ + RG GG + Sbjct: 22 IRAAIMDGRLAIDERLPNE-EQLAHRFGISRPTVREALKVLAAQNLIRSRRGPAGGTFVT 80 Query: 68 RP 69 RP Sbjct: 81 RP 82 >gi|315645861|ref|ZP_07898982.1| transcriptional regulator, GntR family with LacI sensor [Paenibacillus vortex V453] gi|315278622|gb|EFU41936.1| transcriptional regulator, GntR family with LacI sensor [Paenibacillus vortex V453] Length = 401 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + +IA+ +S + + L K G +E ++G+ R + Sbjct: 26 LQAGKQVPSEHEIADQFGVSRQTVRQTFGELEKEGWLERIQGKG---TFARNPE 76 >gi|239979072|ref|ZP_04701596.1| transcriptional regulator [Streptomyces albus J1074] gi|291450949|ref|ZP_06590339.1| DeoR-family transcriptional regulator [Streptomyces albus J1074] gi|291353898|gb|EFE80800.1| DeoR-family transcriptional regulator [Streptomyces albus J1074] Length = 325 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 IR+++ + +++A +SE + + + L +AGI V RGR GG L Sbjct: 7 IRMVLLL--QSRPRMTAAELAGELGVSERTVARDAEALSEAGIPVYAERGRAGGYAL 61 >gi|126433596|ref|YP_001069287.1| helix-turn-helix, type 11 domain-containing protein [Mycobacterium sp. JLS] gi|126233396|gb|ABN96796.1| Helix-turn-helix, type 11 domain protein [Mycobacterium sp. JLS] Length = 317 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++AE ++ + + + L G V RG GG +L Sbjct: 7 RVLQLLGLLQSRRVWSGEELAERLGVTTRSVRRDIDRLRDLGYPVAASRGHGGGYQLG 64 >gi|288551631|ref|YP_003422557.1| pSQ10.9 [Nocardiopsis sp. 90127] gi|88697162|gb|ABD48732.1| pSQ10.9 [Nocardiopsis sp. 90127] Length = 258 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 3 LTKRTDYG--IRVLMYCAIHN-DYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVR 58 ++K ++ +R + H + +AE +S + + L+ L G+V R Sbjct: 9 MSKYSEVADQLRSAIERGEHPRGSALPSEERLAEQFGVSRPVINRALRLLRSEGLVRVER 68 Query: 59 GRR 61 GR Sbjct: 69 GRG 71 >gi|326328962|ref|ZP_08195292.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium Broad-1] gi|325953221|gb|EGD45231.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium Broad-1] Length = 157 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 T+Y VLM + ++ R+S++A IS L ++++ L ++G+VE VR Sbjct: 39 TEY--TVLMNLSEAPEHSLRMSELANYVSISVSGLTRVVERLERSGLVERVR 88 >gi|229818962|ref|YP_002880488.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] gi|229564875|gb|ACQ78726.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] Length = 334 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +AE ++ + + + L + G V +G GG RL Sbjct: 27 ATLAERLAVTPRTVRRDVDRLRELGYPVVATKGPHGGYRLA 67 >gi|229821143|ref|YP_002882669.1| ArsR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567056|gb|ACQ80907.1| transcriptional regulator, ArsR family [Beutenbergia cavernae DSM 12333] Length = 337 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + +A+ +S+ + L+ L ++GIV + R Sbjct: 47 LRMLSLLATAPTGEVCVCDLADLSDVSQPTVSHHLKVLRESGIVASQR 94 >gi|15679716|ref|NP_276834.1| phosphate transport system regulator related protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622855|gb|AAB86194.1| phosphate transport system regulator related protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 303 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 22/34 (64%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P+ +IAE I+ ++ K+LQPL++ G+V Sbjct: 20 ENPSTQDEIAERLGITRRYVTKLLQPLIREGVVR 53 >gi|111020356|ref|YP_703328.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819886|gb|ABG95170.1| probable transcriptional regulator, ArsR family protein [Rhodococcus jostii RHA1] Length = 128 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I+E+ +S+ + L+ L AG+++ R Sbjct: 42 LRLLSLIASHAGGEACVCDISESFDLSQPTISHHLKVLRAAGLLDCER 89 >gi|40806486|gb|AAR92148.1| putative transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R+L A ++AE +S L L PL +AG++E GR GG Sbjct: 8 RILSMLAQGMLRPGSRLGTEREMAETFAVSRSTLRSALLPLSQAGVLERRTGRNGG 63 >gi|11497694|ref|NP_068915.1| biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA) [Archaeoglobus fulgidus DSM 4304] gi|2650573|gb|AAB91153.1| biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA) [Archaeoglobus fulgidus DSM 4304] Length = 299 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 14/93 (15%) Query: 1 MHLTKR-TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETV 57 M +++ TDY + R+L ++ P ++A+ IS ++K +Q L + G VE+ Sbjct: 1 MRISRESTDYRVYRIL------SENPLSGEKLAKKLGISRTAVWKAVQKLKECGVYVESN 54 Query: 58 RGRRGGVRLCRPADQITILDVVK-ATEESFFVA 89 G + +++ +V + A E F Sbjct: 55 AS---GYTIAGE-EELNPYEVARLAFESGFKEV 83 >gi|85712055|ref|ZP_01043108.1| Uncharacterized protein containing Fic domain [Idiomarina baltica OS145] gi|85694045|gb|EAQ31990.1| Uncharacterized protein containing Fic domain [Idiomarina baltica OS145] Length = 238 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 R +++ ++ + +IAE +S + K L + G +E V RGG Sbjct: 171 RKVLFL-VNKERGISAQRIAELLGLSSRAVEKQFARLKQQGKLERVGSPRGGYW 223 >gi|326444564|ref|ZP_08219298.1| ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 363 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT M H P S++A SE + + L+ L +AG+V + R Sbjct: 284 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRSLRILREAGLVRSTR 336 >gi|302550899|ref|ZP_07303241.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302468517|gb|EFL31610.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 333 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 9 MVLLLQSRPAMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61 >gi|196038855|ref|ZP_03106163.1| transcriptional regulator, GntR family [Bacillus cereus NVH0597-99] gi|196045909|ref|ZP_03113138.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108] gi|218905214|ref|YP_002453048.1| transcriptional regulator, GntR family [Bacillus cereus AH820] gi|225866063|ref|YP_002751441.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102] gi|228929126|ref|ZP_04092153.1| Acetoin transport repressor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229031720|ref|ZP_04187713.1| Acetoin transport repressor [Bacillus cereus AH1271] gi|229163015|ref|ZP_04290971.1| Acetoin transport repressor [Bacillus cereus R309803] gi|229186323|ref|ZP_04313488.1| Acetoin transport repressor [Bacillus cereus BGSC 6E1] gi|196023349|gb|EDX62027.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108] gi|196030578|gb|EDX69177.1| transcriptional regulator, GntR family [Bacillus cereus NVH0597-99] gi|218538797|gb|ACK91195.1| transcriptional regulator, GntR family [Bacillus cereus AH820] gi|225790062|gb|ACO30279.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102] gi|228597117|gb|EEK54772.1| Acetoin transport repressor [Bacillus cereus BGSC 6E1] gi|228620421|gb|EEK77291.1| Acetoin transport repressor [Bacillus cereus R309803] gi|228729604|gb|EEL80591.1| Acetoin transport repressor [Bacillus cereus AH1271] gi|228830416|gb|EEM76026.1| Acetoin transport repressor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 139 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|306833376|ref|ZP_07466503.1| GntR family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424146|gb|EFM27285.1| GntR family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 122 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 18/39 (46%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + D + ++AE ++ + + L + G+V + R Sbjct: 30 NGDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68 >gi|297153425|gb|ADI03137.1| transposase [Streptomyces bingchenggensis BCW-1] Length = 173 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCG 106 L T+ D+V+ E + + ECF + K +C C Sbjct: 67 YYLAYAPLDATVADLVRVAESRWAIEECFQAAKNECGLDRYEVCR 111 >gi|325673702|ref|ZP_08153393.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555723|gb|EGD25394.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 329 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 S +A+ IS + + + L + G + G GG RL Sbjct: 24 STLAQRLDISPRTVRRDIDRLREMGYAIHATMGPTGGYRL 63 >gi|227533066|ref|ZP_03963115.1| plasmid replication protein RepR [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189300|gb|EEI69367.1| plasmid replication protein RepR [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 507 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Query: 30 IAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67 I++A I L K+L+ + AG ++ T RGR GG+ + Sbjct: 396 ISDALSIPSRSLAKLLRLMQAAGEIVLHTRRGRNGGLSIA 435 >gi|148554593|ref|YP_001262175.1| GntR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499783|gb|ABQ68037.1| transcriptional regulator, GntR family [Sphingomonas wittichii RW1] Length = 246 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + D +A +S L + ++ L G+VE+ RG GG+ Sbjct: 31 LPGDKLPPERALALQLGVSRTVLREAIRALEGEGLVESRRGAMGGL 76 >gi|324327984|gb|ADY23244.1| GntR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 139 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|294816234|ref|ZP_06774877.1| ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294328833|gb|EFG10476.1| ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 338 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT M H P S++A SE + + L+ L +AG+V + R Sbjct: 259 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRSLRILREAGLVRSTR 311 >gi|145294383|ref|YP_001137204.1| hypothetical protein cgR_0338 [Corynebacterium glutamicum R] gi|140844303|dbj|BAF53302.1| hypothetical protein [Corynebacterium glutamicum R] Length = 91 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 23/44 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R+L + A P ++++ E +S+ + L+ + AG++ Sbjct: 20 LRILSHLAAEGCTPTTVNELTEIMGLSQPTISHHLKKMTDAGLL 63 >gi|19551512|ref|NP_599514.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389159|ref|YP_224561.1| hypothetical protein cg0317 [Corynebacterium glutamicum ATCC 13032] gi|21323025|dbj|BAB97654.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41324492|emb|CAF18832.1| unnamed protein product [Corynebacterium glutamicum ATCC 13032] Length = 115 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 23/44 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R+L + A P ++++ E +S+ + L+ + AG++ Sbjct: 44 LRILSHLAAEGCTPTTVNELTEIMGLSQPTISHHLKKMTDAGLL 87 >gi|158313195|ref|YP_001505703.1| GntR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108600|gb|ABW10797.1| transcriptional regulator, GntR family [Frankia sp. EAN1pec] Length = 130 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L + +RV Y D RI ++ E+ I+ + K + L G+V+ G Sbjct: 16 MQLVSQVRQALRV-GYL-EPGDQLPRIREVTESLAINPNTVLKAYRELEHEGLVKGRPG 72 >gi|169630016|ref|YP_001703665.1| GntR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169241983|emb|CAM63011.1| Putative transcriptional regulator, GntR family [Mycobacterium abscessus] Length = 236 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 R ++ A I ++A+ IS + + + L+ LV G+V+ GG R+ + Sbjct: 32 RAILDGAAPPGSMIPIGEVADTYQISPIPVREALKTLVAEGLVD--HRANGGYRVAQ 86 >gi|158422893|ref|YP_001524185.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] gi|158329782|dbj|BAF87267.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] Length = 118 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T +R++ I I+EA S L L+ L AG+V + R Sbjct: 13 LSQETR--LRIVRRLVIAGPDGISAGAISEAVGASMSTLSFHLKELEHAGLVRSRR 66 >gi|88604169|ref|YP_504347.1| signal transduction protein [Methanospirillum hungatei JF-1] gi|88189631|gb|ABD42628.1| putative signal transduction protein with CBS domains [Methanospirillum hungatei JF-1] Length = 292 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + L+ P + +IA+ + + +Q L G+V+ + G +GG Sbjct: 11 LITLISLYEKKSLPIKGEEIADIILRNPGTVRNQMQALKAIGLVDGIPGPKGGY 64 >gi|261405488|ref|YP_003241729.1| GntR family transcriptional regulator with LacI sensor [Paenibacillus sp. Y412MC10] gi|261281951|gb|ACX63922.1| transcriptional regulator, GntR family with LacI sensor [Paenibacillus sp. Y412MC10] Length = 363 Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + +IA+ +S + + L K G +E ++G+ R + Sbjct: 26 LQAGKQVPSEHEIADQFGVSRQTVRQTFGELEKEGWLERIQGKG---TFARNPE 76 >gi|15838933|ref|NP_299621.1| heat-inducible transcription repressor [Xylella fastidiosa 9a5c] gi|9107513|gb|AAF85141.1|AE004044_12 heat-inducible transcriptional repressor [Xylella fastidiosa 9a5c] Length = 367 Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56 L R+ +R L+ C I N P +A+ IS + IL L + G++ + Sbjct: 27 LDSRSRQLLRTLISCYIQNGEPVGSKTLAQQAGLDISPATIRNILADLEELGLLNS 82 >gi|330507475|ref|YP_004383903.1| hypothetical protein MCON_1421 [Methanosaeta concilii GP-6] gi|328928283|gb|AEB68085.1| CBS domain pair protein/Domain of unknown function PF03444 [Methanosaeta concilii GP-6] Length = 452 Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + L+ + + +I E + + ++ L +VE+V G RGG Sbjct: 172 LSTLVNLHRTDSRAVKAKEIGELMDRNPETIRIQMRSLKALNLVESVTGPRGGY 225 >gi|283851887|ref|ZP_06369164.1| ribonuclease BN [Desulfovibrio sp. FW1012B] gi|283572803|gb|EFC20786.1| ribonuclease BN [Desulfovibrio sp. FW1012B] Length = 451 Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--RLCRPADQITILDVVKA 81 P +S++A + E L + + L AG+V G L R + +T+ +V +A Sbjct: 338 PPPVSRLAGLFGLPEPVLAGLWEDLATAGLVVEAASPDGRAFTSLAR-PEDVTVAEVARA 396 Query: 82 TE 83 + Sbjct: 397 LD 398 >gi|212224606|ref|YP_002307842.1| hypothetical protein TON_1455 [Thermococcus onnurineus NA1] gi|212009563|gb|ACJ16945.1| hypothetical protein TON_1455 [Thermococcus onnurineus NA1] Length = 169 Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 ++ T I +L+ + P S+IA+ +S+ + + LVK GIVE R G+ Sbjct: 73 ISTETRRKILLLLM-----EGPMGQSEIAKRLNLSQPTVSYHMGELVKLGIVEARREGKN 127 Query: 62 GGVRLCRPADQITILDVVK 80 L I V++ Sbjct: 128 VIYTLTYDPAII--ARVIR 144 >gi|332158284|ref|YP_004423563.1| putative protein replication factor C small subunit [Pyrococcus sp. NA2] gi|331033747|gb|AEC51559.1| putative protein replication factor C small subunit [Pyrococcus sp. NA2] Length = 1267 Score = 38.4 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPADQ--- 72 A+ + +I E IS + L +IL LV G VE RGR+ +L R + Sbjct: 702 LALIGEEWTTKEEIQEKAKISIVRLNQILMNLVSKGYVEKKGRGRK---QLIRKLREGKA 758 Query: 73 ---ITILDVVKATEESFFV 88 IT D+ + EE F + Sbjct: 759 VKKIT--DIRRVLEEEFNM 775 >gi|312139021|ref|YP_004006357.1| DeoR family transcriptional regulator [Rhodococcus equi 103S] gi|311888360|emb|CBH47672.1| putative DeoR family transcriptional regulator [Rhodococcus equi 103S] Length = 329 Score = 38.4 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 S +A+ IS + + + L + G + G GG RL Sbjct: 24 STLAQRLDISPRTVRRDIDRLREMGYAIHATMGPTGGYRL 63 >gi|116696415|ref|YP_841991.1| GntR family transcriptional regulator [Ralstonia eutropha H16] gi|113530914|emb|CAJ97261.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 247 Score = 38.4 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H +++A A +S + + + L AG VET RG Sbjct: 39 AHGQQLPTENELATAFDVSRNVVREAIARLKLAGYVETRRGTG 81 >gi|296284957|ref|ZP_06862955.1| putative transcriptional regulator, ArsR family protein [Citromicrobium bathyomarinum JL354] Length = 108 Score = 38.4 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C + R++ +AE +S+ L + L + G+V++ R Sbjct: 34 RLMVMCKLAEHGEMRVNALAEEVGLSQSALSQHLAKMRAEGLVDSRR 80 >gi|296135526|ref|YP_003642768.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12] gi|295795648|gb|ADG30438.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12] Length = 114 Score = 38.4 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+L+ C I+ +S + AC +S+ L + L L G+V+T R G+R L PA Sbjct: 34 RLLILCQINRGEIC-VSDLEVACDVSQPTLSQQLTVLRAQGLVKTRREGKRVYYSLASPA 92 Query: 71 DQ---ITILDVV 79 +T+ + Sbjct: 93 ASAVLMTLYQIY 104 >gi|108797934|ref|YP_638131.1| helix-turn-helix, type 11 [Mycobacterium sp. MCS] gi|119867030|ref|YP_936982.1| helix-turn-helix, type 11 domain-containing protein [Mycobacterium sp. KMS] gi|108768353|gb|ABG07075.1| Helix-turn-helix, type 11 [Mycobacterium sp. MCS] gi|119693119|gb|ABL90192.1| Helix-turn-helix, type 11 domain protein [Mycobacterium sp. KMS] Length = 317 Score = 38.4 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++AE ++ + + + L G V RG GG +L Sbjct: 7 RVLQLLGLLQSRRVWSGEELAERLGVTTRSVRRDIDRLRDLGYPVAASRGHGGGYQLG 64 >gi|254465427|ref|ZP_05078838.1| transcriptional regulator, AsnC family [Rhodobacterales bacterium Y4I] gi|206686335|gb|EDZ46817.1| transcriptional regulator, AsnC family [Rhodobacterales bacterium Y4I] Length = 152 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 28/110 (25%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L +R R+L D + +AEA +S L++ ++ L +AGI+E R Sbjct: 1 MKLDRRDR---RILTLL--QEDSRISNADLAEAVGMSPSALWRRVRALEEAGIIE----R 51 Query: 61 RG----------GVR------LCR-PADQITILDVVKATEESFFVAECFA 93 G G + L R D+ +++ ++A E S V EC+A Sbjct: 52 YGAVVNAPAMGLGFQAIVHVHLTRHDPDK--LVEFIRAVETSPLVQECYA 99 >gi|302530910|ref|ZP_07283252.1| predicted protein [Streptomyces sp. AA4] gi|302439805|gb|EFL11621.1| predicted protein [Streptomyces sp. AA4] Length = 322 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L++ +H + ++A ++E L + L L +AG+ + + GR GG+RL Sbjct: 6 LVALLF-TLHRKRAGTVGELAGELGVTERTLRRDLAALREAGVPLWSEPGRHGGIRL 61 >gi|325972818|ref|YP_004249009.1| AraC family transcriptional regulator [Spirochaeta sp. Buddy] gi|324028056|gb|ADY14815.1| transcriptional regulator, AraC family [Spirochaeta sp. Buddy] Length = 1064 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 19/36 (52%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R ++Y H P Q+AEA +SE +L +I + Sbjct: 965 RAIVYLGEHATTPISRWQLAEAVNVSEDYLTRIFRK 1000 >gi|164686640|ref|ZP_02210668.1| hypothetical protein CLOBAR_00233 [Clostridium bartlettii DSM 16795] gi|164604369|gb|EDQ97834.1| hypothetical protein CLOBAR_00233 [Clostridium bartlettii DSM 16795] Length = 327 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73 + Q+++ IS ++K + L + G +E+V + G RL D I Sbjct: 15 GENFMSGEQLSKKLGISRTAVWKHINALREEGYNIESVNKK--GYRLAEKPDDI 66 >gi|49478520|ref|YP_038136.1| GntR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093135|ref|ZP_04224257.1| Acetoin transport repressor [Bacillus cereus Rock3-42] gi|49330076|gb|AAT60722.1| transcriptional regulator, GntR family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228690284|gb|EEL44077.1| Acetoin transport repressor [Bacillus cereus Rock3-42] Length = 139 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73 >gi|30022163|ref|NP_833794.1| acetoin transport repressor [Bacillus cereus ATCC 14579] gi|29897720|gb|AAP10995.1| Acetoin transport repressor [Bacillus cereus ATCC 14579] Length = 141 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 33 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 75 >gi|266620920|ref|ZP_06113855.1| putative trehalose operon repressor [Clostridium hathewayi DSM 13479] gi|288867439|gb|EFC99737.1| putative trehalose operon repressor [Clostridium hathewayi DSM 13479] Length = 254 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++AE+ +S + + + + L K G++ RGR Sbjct: 32 LVDENGKLPAEKELAESYKVSRVTMRQAIAELEKDGLIVRYRGRG 76 >gi|300780362|ref|ZP_07090218.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300534472|gb|EFK55531.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 135 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 15 MYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M A+ S++AE +++ L + + L G VE G GG +L Sbjct: 1 MLLALLQTGQTFTGSELAERIGVNDRTLRRYIGELGALGFEVEGRPGFYGGYQL 54 >gi|332686446|ref|YP_004456220.1| cytosolic protein containing multiple CBS domains [Melissococcus plutonius ATCC 35311] gi|332370455|dbj|BAK21411.1| cytosolic protein containing multiple CBS domains [Melissococcus plutonius ATCC 35311] Length = 441 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 26/127 (20%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILDV 78 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T +V Sbjct: 19 ERISVRSIAKNLGVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIERLTFGEV 77 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLVR 132 VK E L G+ GL VL K A +T S+ +V Sbjct: 78 VKIIEGDV--------------LGGTAGLNKVLDKFVIGAMTEKAMARYITPGSL-MIVG 122 Query: 133 NRSSIKK 139 NR I+K Sbjct: 123 NRQEIQK 129 >gi|271966100|ref|YP_003340296.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509275|gb|ACZ87553.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 229 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L D + + ++ + + ++ L G+VE G GG+ + PA Sbjct: 24 RILSGEWAQGDRLGTRADLRVKYGVAAATVSETVRMLEARGLVEARPGNGGGIFVSEPAA 83 Query: 72 QITILD-VVKATEESFFVAECFA 93 + + V++ E VA+C A Sbjct: 84 FVRLGHKVLELHSEPITVADCLA 106 >gi|307266549|ref|ZP_07548081.1| transcriptional regulator, MarR family [Thermoanaerobacter wiegelii Rt8.B1] gi|326390134|ref|ZP_08211695.1| regulatory protein MarR [Thermoanaerobacter ethanolicus JW 200] gi|306918403|gb|EFN48645.1| transcriptional regulator, MarR family [Thermoanaerobacter wiegelii Rt8.B1] gi|325993782|gb|EGD52213.1| regulatory protein MarR [Thermoanaerobacter ethanolicus JW 200] Length = 146 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 V+M + + + P + IA IS L I+ LV+ G+V+ Sbjct: 44 VIMVLSENKNTPIYMKDIASELDISPSTLTSIVDKLVEKGLVQ 86 >gi|170739533|ref|YP_001768188.1| Crp/FNR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193807|gb|ACA15754.1| transcriptional regulator, Crp/Fnr family [Methylobacterium sp. 4-46] Length = 263 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D P +A+ +S + + ++LQ L + G++ ++RG R Sbjct: 203 QYDLPLTQVDLADTLGLSYVHVNRVLQALRRDGLI-SLRGPR 243 >gi|294339655|emb|CAZ88015.1| putative transcriptional regulator (ArsR family) [Thiomonas sp. 3As] Length = 116 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+L+ C I+ +S + AC +S+ L + L L G+V+T R G+R L PA Sbjct: 36 RLLILCQINRGEIC-VSDLEVACDVSQPTLSQQLTVLRAQGLVKTRREGKRVYYSLASPA 94 Query: 71 DQ---ITILDVV 79 +T+ + Sbjct: 95 ASAVLMTLYQIY 106 >gi|284028159|ref|YP_003378090.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283807452|gb|ADB29291.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 312 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 17 CAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 A +P +AE ++E + + + L + G ++ GR GG RL Sbjct: 11 LAQLQSHPGISAPGLAERLGVTERTVRRDIAQLRELGYRIDGEAGRTGGYRLA 63 >gi|182438502|ref|YP_001826221.1| IclR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779148|ref|ZP_08238413.1| transcriptional regulator, IclR family [Streptomyces cf. griseus XylebKG-1] gi|178467018|dbj|BAG21538.1| putative IclR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659481|gb|EGE44327.1| transcriptional regulator, IclR family [Streptomyces cf. griseus XylebKG-1] Length = 252 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y +RVL + H + ++I+ + L +L L + G VE Sbjct: 16 YALRVLETVSRHGNG-VTEARISRETGLPTGHLASLLLTLRREGYVE 61 >gi|188579452|ref|YP_001922897.1| Crp/Fnr family transcriptional regulator [Methylobacterium populi BJ001] gi|179342950|gb|ACB78362.1| putative transcriptional regulator, Crp/Fnr family [Methylobacterium populi BJ001] Length = 263 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 P +AE + +L + L+ L + G+++ RGR + L RPA + Sbjct: 172 PVTHEVLAELLGVQRSYLTRTLRTLQQQGLIQARRGRI--IILSRPAVE 218 >gi|46137631|ref|XP_390507.1| hypothetical protein FG10331.1 [Gibberella zeae PH-1] Length = 418 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R ++ + D +S++A+ + + L +I++ L G V+ Sbjct: 95 RAMV---QNGDRGQSVSELADQTGVDPVLLARIMRHLAAMGYVD 135 >gi|324993073|gb|EGC24993.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK405] gi|324995621|gb|EGC27533.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK678] Length = 311 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 L D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 7 LFDILSRADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|292386163|gb|ADE22342.1| transcriptional regulator [Streptomyces galbus] Length = 279 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L+ A + P+R+ Q+AE + ++++LQ LV G V T Sbjct: 35 ALLELLAGRGEQPSRLDQLAEELDVPRSSMYQLLQTLVDCGWVRT 79 >gi|311280640|ref|YP_003942871.1| transcriptional regulator, GntR family with aminotransferase domain [Enterobacter cloacae SCF1] gi|308749835|gb|ADO49587.1| transcriptional regulator, GntR family with aminotransferase domain [Enterobacter cloacae SCF1] Length = 475 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A+ + P ++A A IS L L L G + + G Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAGALNISRTTLASALAQLRDEGYIASRHGSG 87 >gi|295134130|ref|YP_003584806.1| transcriptional regulator MarR family protein [Zunongwangia profunda SM-A87] gi|294982145|gb|ADF52610.1| transcriptional regulator, MarR family protein [Zunongwangia profunda SM-A87] Length = 161 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 22/45 (48%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +++ + + QIAE +S + +++ + K G + +V+ Sbjct: 46 MIFLLLQKHEKLTVMQIAEKLHLSHPAIVQLVDKMKKKGYINSVK 90 >gi|297200335|ref|ZP_06917732.1| DeoR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197709450|gb|EDY53484.1| DeoR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 323 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G VE +G GG RL P Sbjct: 26 ELADRLQVSRRTVRRDIDRLRELGYPVEASKGSDGGYRLVAGKAMPP 72 >gi|23099219|ref|NP_692685.1| biotin [acetyl-CoA carboxylase] ligase [Oceanobacillus iheyensis HTE831] gi|22777448|dbj|BAC13720.1| biotin [acetyl-CoA carboxylase] ligase : transcriptional repressor of the biotin operon [Oceanobacillus iheyensis HTE831] Length = 328 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + +++ +++E IS ++K ++ L K G V + R+G R+ + ++I+ Sbjct: 12 LSSNHEDYASGQRLSELLSISRNAVWKHMKELEKDGYVIEAKPRKG-YRIIKSPNKIS 68 >gi|302538986|ref|ZP_07291328.1| helix-turn-helix domain-containing protein [Streptomyces sp. C] gi|302447881|gb|EFL19697.1| helix-turn-helix domain-containing protein [Streptomyces sp. C] Length = 315 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + ++A +SE + L+ L +GI V + RGR GG L Sbjct: 13 LQERGRVTVPEVAAELEVSERTARRDLEALAASGIPVYSQRGRGGGWSL 61 >gi|70725746|ref|YP_252660.1| hypothetical protein SH0745 [Staphylococcus haemolyticus JCSC1435] gi|68446470|dbj|BAE04054.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 233 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75 I + S++A+ +S + + + L G+ + +G+ GG ++ + D+I + Sbjct: 15 IQQGHTINASELAQHLNVSVRTISRDIVDLENQGVQIYAHKGKNGGYQIQKSEDKIKL 72 >gi|167749844|ref|ZP_02421971.1| hypothetical protein EUBSIR_00812 [Eubacterium siraeum DSM 15702] gi|167657156|gb|EDS01286.1| hypothetical protein EUBSIR_00812 [Eubacterium siraeum DSM 15702] Length = 154 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 23/43 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 RVLMY A D + + + CIS+ + +++ L K+G + Sbjct: 39 RVLMYIANSPDKDIFAADLHKHLCISKPSVSALIKKLRKSGYI 81 >gi|159905976|ref|YP_001549638.1| BadM/Rrf2 family transcriptional regulator [Methanococcus maripaludis C6] gi|159887469|gb|ABX02406.1| transcriptional regulator, BadM/Rrf2 family [Methanococcus maripaludis C6] Length = 144 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ ++L + + +IA + + ++ L G VET +G+ Sbjct: 1 MKIDGLTE---KILTLL----EKYSTTREIAGVLETHPKNIDRYIRVLRDLGFVETKKGK 53 Query: 61 RGGVRLC 67 GGV L Sbjct: 54 TGGVFLT 60 >gi|54301936|ref|YP_131929.1| putative melibiose operon regulatory protein [Photobacterium profundum SS9] gi|46915356|emb|CAG22129.1| putative melibiose operon regulatory protein [Photobacterium profundum SS9] Length = 168 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 3 LTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 L+K + Y ++L Y A H+D P + QIA+ + + I Q + Sbjct: 26 LSKHSQFYVSQMLEYIATHHDTPLTVKQIADHVGLHANYAMGIFQRM 72 >gi|153010865|ref|YP_001372079.1| GntR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562753|gb|ABS16250.1| transcriptional regulator, GntR family [Ochrobactrum anthropi ATCC 49188] Length = 256 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 1 MHLTKRTDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + + IR L+ + IAE IS + + K + LVKAG++ Sbjct: 26 MQLRQSLETAIRAGQLVD----GEALPPERDIAEYANISRVTVRKAVDDLVKAGLLVRRH 81 Query: 59 GRR 61 G Sbjct: 82 GSG 84 >gi|99080208|ref|YP_612362.1| ROK domain-containing protein [Ruegeria sp. TM1040] gi|99036488|gb|ABF63100.1| ROK domain protein [Ruegeria sp. TM1040] Length = 413 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62 R+L+ +H S++A +S + IL+ L + G+V E+ +GR G Sbjct: 37 RLLLTL-LHQGGALPGSEMARRTGLSSQTVSVILRKLEQDGLVLRGESQKGRVG 89 >gi|302523802|ref|ZP_07276144.1| predicted protein [Streptomyces sp. AA4] gi|302432697|gb|EFL04513.1| predicted protein [Streptomyces sp. AA4] Length = 314 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 17 CAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 A+ P + +A ++E + + L + G ++ GR GG RL Sbjct: 11 LALLQARPGISATDLAARLGVTERTTRRDIAQLRELGYRIDGEPGRVGGYRLA 63 >gi|256372737|ref|YP_003110561.1| hypothetical protein Afer_1985 [Acidimicrobium ferrooxidans DSM 10331] gi|256009321|gb|ACU54888.1| hypothetical protein Afer_1985 [Acidimicrobium ferrooxidans DSM 10331] Length = 138 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ A RI IAE I+E I+ L++AG V R Sbjct: 36 HVLVCIARDPG--IRIRDIAERVGITERAAQGIVADLIRAGYVVRTR 80 >gi|108799029|ref|YP_639226.1| ArsR family transcriptional regulator [Mycobacterium sp. MCS] gi|119868144|ref|YP_938096.1| ArsR family transcriptional regulator [Mycobacterium sp. KMS] gi|126434632|ref|YP_001070323.1| ArsR family transcriptional regulator [Mycobacterium sp. JLS] gi|108769448|gb|ABG08170.1| transcriptional regulator, ArsR family [Mycobacterium sp. MCS] gi|119694233|gb|ABL91306.1| transcriptional regulator, ArsR family [Mycobacterium sp. KMS] gi|126234432|gb|ABN97832.1| transcriptional regulator, ArsR family [Mycobacterium sp. JLS] Length = 112 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 R+ + ++H +S +A A SE + + L+ L + G V + R GR RL Sbjct: 40 RLEILLSLHRAPGICVSDLAAALGRSENAVSQALRVLRQQGWVSSTRVGRAVSYRL 95 >gi|290961059|ref|YP_003492241.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260650585|emb|CBG73701.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 333 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 9 MVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61 >gi|294495219|ref|YP_003541712.1| hypothetical protein Mmah_0540 [Methanohalophilus mahii DSM 5219] gi|292666218|gb|ADE36067.1| hypothetical protein Mmah_0540 [Methanohalophilus mahii DSM 5219] Length = 66 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 +D P R ++AEA I + + K + L K G+V + Sbjct: 19 ESDKPMRSGEVAEAADIDKKVVSKTITKLKKKGLVCS 55 >gi|226354922|ref|YP_002784662.1| transcriptional regulator [Deinococcus deserti VCD115] gi|226316912|gb|ACO44908.1| putative transcriptional regulator [Deinococcus deserti VCD115] Length = 318 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +RVL + +++A +S + + + L GI VE RG G L Sbjct: 5 SMRVLTVLELLQARESVTGAELARRLEVSPRTVQRYVTRLQDLGIPVEGRRGVGGAYCL 63 >gi|239504092|ref|ZP_04663402.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|193076797|gb|ABO11517.2| GntR-family transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 239 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|159039896|ref|YP_001539149.1| helix-turn-helix type 11 domain-containing protein [Salinispora arenicola CNS-205] gi|157918731|gb|ABW00159.1| Helix-turn-helix type 11 domain protein [Salinispora arenicola CNS-205] Length = 320 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 S++A +S + + L G V+ G GG RL Sbjct: 22 TSSELAGRLGVSTRTVRADIGKLRSLGYPVDARPGVAGGYRLA 64 >gi|118479280|ref|YP_896431.1| GntR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118418505|gb|ABK86924.1| transcriptional regulator, GntR family [Bacillus thuringiensis str. Al Hakam] Length = 168 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 60 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 102 >gi|152967681|ref|YP_001363465.1| MarR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362198|gb|ABS05201.1| transcriptional regulator, MarR family [Kineococcus radiotolerans SRS30216] Length = 153 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ A+ + P + ++EA + L +L+ L AG++E R Sbjct: 47 LVMLALWGNEPLSVKDLSEALQLDPPTLSPLLKRLEAAGLLERRR 91 >gi|71276147|ref|ZP_00652427.1| Negative regulator of class I heat shock protein [Xylella fastidiosa Dixon] gi|71900372|ref|ZP_00682506.1| Negative regulator of class I heat shock protein [Xylella fastidiosa Ann-1] gi|170730626|ref|YP_001776059.1| heat-inducible transcription repressor [Xylella fastidiosa M12] gi|24212659|sp|Q9PB03|HRCA_XYLFA RecName: Full=Heat-inducible transcription repressor hrcA gi|238687927|sp|B0U3K0|HRCA_XYLFM RecName: Full=Heat-inducible transcription repressor hrcA gi|71163065|gb|EAO12787.1| Negative regulator of class I heat shock protein [Xylella fastidiosa Dixon] gi|71729875|gb|EAO31972.1| Negative regulator of class I heat shock protein [Xylella fastidiosa Ann-1] gi|167965419|gb|ACA12429.1| heat-inducible transcriptional repressor [Xylella fastidiosa M12] Length = 349 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56 L R+ +R L+ C I N P +A+ IS + IL L + G++ + Sbjct: 9 LDSRSRQLLRTLISCYIQNGEPVGSKTLAQQAGLDISPATIRNILADLEELGLLNS 64 >gi|331694015|ref|YP_004330254.1| IclR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948704|gb|AEA22401.1| transcriptional regulator, IclR family [Pseudonocardia dioxanivorans CB1190] Length = 262 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRL 66 +RV+ A D IA ++++L LV+ G + + VRG G R+ Sbjct: 15 ALRVVDAVAAAGDG-VTAKAIARRLGSPLPTIYRVLATLVEEGYLVRMQDVRGYGLGYRV 73 Query: 67 CR 68 Sbjct: 74 AE 75 >gi|260557422|ref|ZP_05829637.1| GntR-family transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409048|gb|EEX02351.1| GntR-family transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 239 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|255605727|ref|XP_002538438.1| Nodulation protein nolR, putative [Ricinus communis] gi|223512134|gb|EEF23945.1| Nodulation protein nolR, putative [Ricinus communis] Length = 82 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR---------GRRGGVRLC 67 +I ++ R+S++ E IS+ L + L L + G+V T R G G ++L Sbjct: 10 LSIISNEEIRVSELGERLEISQSALSQHLSILREGGLVVTRREAQSIFYSTGHPGVLKLL 69 Query: 68 RPADQI 73 R I Sbjct: 70 RSLKDI 75 >gi|322412753|gb|EFY03661.1| hypothetical protein SDD27957_10390 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 149 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL++ + H D + I + IS+ +++ +VK G ++ Sbjct: 37 HVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK 80 >gi|301055573|ref|YP_003793784.1| GntR family transcriptional regulator [Bacillus anthracis CI] gi|300377742|gb|ADK06646.1| transcriptional regulator, GntR family [Bacillus cereus biovar anthracis str. CI] Length = 141 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A I+ + K Q L + GI+ET+RG+ Sbjct: 33 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 75 >gi|169244310|gb|ACA50468.1| IclR family regulatory protein [Pseudomonas fluorescens] Length = 263 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI---TILD 77 ++ +S IA + + +I+ L + +VE++ G GG RL Q+ T D Sbjct: 30 SNGGLSLSAIANIVKLPRSTVHRIIVALEEEHLVESI-GPSGGFRLGHALGQLIHETQAD 88 Query: 78 VVKATEESFFVAECFASHKIDC 99 ++ + E C + C Sbjct: 89 IISSVREYLD-NLCAQVRESVC 109 >gi|163846131|ref|YP_001634175.1| helix-turn-helix type 11 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222523869|ref|YP_002568339.1| Helix-turn-helix type 11 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667420|gb|ABY33786.1| Helix-turn-helix type 11 domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447748|gb|ACM52014.1| Helix-turn-helix type 11 domain protein [Chloroflexus sp. Y-400-fl] Length = 96 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR------GGVR 65 VL+ A + +IA I+E + +IL L +AG + VR GR G Sbjct: 12 VLLCIARNP--RVTAQEIARTIGITERAVQRILHDLHEAGYISHVREGRHNHYTIYGDQP 69 Query: 66 LCRPADQ-ITILDVVKAT 82 L P Q IT+ +++ A Sbjct: 70 LRHPTVQNITVRELLAAL 87 >gi|315503586|ref|YP_004082473.1| helix-turn-helix type 11 domain protein [Micromonospora sp. L5] gi|315410205|gb|ADU08322.1| helix-turn-helix type 11 domain protein [Micromonospora sp. L5] Length = 330 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + + +++A +SE +++ + L AG+ V RGR GG RL Sbjct: 9 LVLLLQSRETMTAAELARELEVSERTVYRDVLALSAAGVPVYADRGRAGGYRL 61 >gi|284042196|ref|YP_003392536.1| hypothetical protein Cwoe_0728 [Conexibacter woesei DSM 14684] gi|283946417|gb|ADB49161.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM 14684] Length = 320 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++A S L + + L + G V RG G RL Sbjct: 16 QTGRAWSGAELAGQLGTSPRSLRRDVTRLRELGYPVAAPRGPGGHYRLA 64 >gi|257792194|ref|YP_003182800.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|257476091|gb|ACV56411.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] Length = 128 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +++ ++ + K+ Q L + G + T RGR Sbjct: 33 RGERLPSVRELSVQLGVNYNTINKVYQDLERDGYIFTKRGRG 74 >gi|257055826|ref|YP_003133658.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585698|gb|ACU96831.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 211 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66 +R+L A H P +++AE S L+ L K G V + RGR+ RL Sbjct: 28 LRLLETLAEHG--PATATELAERVGESPSNCSWHLRQLGKHGFVASGTPSGRGRQRPWRL 85 Query: 67 CRPADQITILDV 78 +I + +V Sbjct: 86 V--PRRIQLDEV 95 >gi|271966637|ref|YP_003340833.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509812|gb|ACZ88090.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 318 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +R+L H +P ++A+ +SE L + + L G V RG GG +L Sbjct: 9 LRLLSLLQTHRHWPG--GELADRLGVSERALRRDIDRLRGLGYPVHAGRGLSGGYQL 63 >gi|162452903|ref|YP_001615270.1| DeoR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161163485|emb|CAN94790.1| putative DeoR-family transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 245 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Query: 10 GIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +RV+ + + ++A +S + + L L + G+ +E G GG+RL Sbjct: 4 ALRVMELSDL-LRARGATTVGELAATLGVSARTVRRDLATLRERGLDIEGEAGPGGGIRL 62 Query: 67 ----CRPADQITILDVV 79 A +++ ++V Sbjct: 63 DAGRGVTAVHLSVAEIV 79 >gi|222080918|ref|YP_002540281.1| L-asparagine operon transcriptional regulator (repressor) protein [Agrobacterium radiobacter K84] gi|221725597|gb|ACM28686.1| L-asparagine operon transcriptional regulator (repressor) protein [Agrobacterium radiobacter K84] Length = 251 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ +A + IS + + L+ L ++ + RG GG + RP Sbjct: 33 DERLPTEEDLARSFGISRPTVREALKRLAAQNLIHSRRGPLGGNFVMRP 81 >gi|323487835|ref|ZP_08093093.1| Adenosine deaminase [Planococcus donghaensis MPA1U2] gi|323398569|gb|EGA91357.1| Adenosine deaminase [Planococcus donghaensis MPA1U2] Length = 186 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 15/35 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 V+ Y + + QIA +S +L +I + Sbjct: 84 VMTYLTANYKERVSLQQIAHHVGMSPSYLERIFKQ 118 >gi|302560148|ref|ZP_07312490.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302477766|gb|EFL40859.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 324 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G V G GG RL P Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVRATMGADGGYRLVAGKAMPP 72 >gi|184157451|ref|YP_001845790.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332874087|ref|ZP_08442021.1| transcriptional regulator, GntR family [Acinetobacter baumannii 6014059] gi|183209045|gb|ACC56443.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|323517344|gb|ADX91725.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737699|gb|EGJ68592.1| transcriptional regulator, GntR family [Acinetobacter baumannii 6014059] Length = 239 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|167758617|ref|ZP_02430744.1| hypothetical protein CLOSCI_00957 [Clostridium scindens ATCC 35704] gi|167663813|gb|EDS07943.1| hypothetical protein CLOSCI_00957 [Clostridium scindens ATCC 35704] Length = 327 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 ++ +D QI E +S ++K+++ L K G +E VR + G RL D Sbjct: 5 ILRLLKSSDTYLSGQQICEQFQVSRTAVWKVMEQLKKEGYQIEAVRNK--GYRLVDSPDV 62 Query: 73 ITILDV 78 ++ ++ Sbjct: 63 MSKAEI 68 >gi|152996724|ref|YP_001341559.1| regulatory protein ArsR [Marinomonas sp. MWYL1] gi|150837648|gb|ABR71624.1| regulatory protein ArsR [Marinomonas sp. MWYL1] Length = 306 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRPA-DQITI 75 +H P ++ IA+ + + + L AG++ E+ +GR+G ++CR ++I + Sbjct: 32 LHEKGPMNVNDIADLLELPQSSTSSHINSLESAGLITTESQKGRKGSQKICRATHEEIVL 91 >gi|121605599|ref|YP_982928.1| regulatory proteins, IclR [Polaromonas naphthalenivorans CJ2] gi|120594568|gb|ABM38007.1| regulatory protein, IclR [Polaromonas naphthalenivorans CJ2] Length = 284 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +L A H + ++ IA+ I + ++L L + G V R G L Sbjct: 11 ILELLAQHGEG-MEMAAIADQLDIPRSAVHRLLADLARCGYVRQTR-DHGDYLLT 63 >gi|320010255|gb|ADW05105.1| DeoR family transcriptional regulator [Streptomyces flavogriseus ATCC 33331] Length = 329 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++A +S + + + L G VE RG GG RL P Sbjct: 24 SELAGRLEVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGTAMPP 71 >gi|302534567|ref|ZP_07286909.1| IclR family transcriptional regulator [Streptomyces sp. C] gi|302443462|gb|EFL15278.1| IclR family transcriptional regulator [Streptomyces sp. C] Length = 252 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 Y +RVL + H + QIA + + L +L L + G V Sbjct: 16 YALRVLETISRHTGGVTDV-QIARETGLPAVHLAPMLLMLRREGYV 60 >gi|189466142|ref|ZP_03014927.1| hypothetical protein BACINT_02512 [Bacteroides intestinalis DSM 17393] gi|189434406|gb|EDV03391.1| hypothetical protein BACINT_02512 [Bacteroides intestinalis DSM 17393] Length = 247 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L A +S+IA++ ++ IL+ LV VE + G + G +L Sbjct: 8 ALSILEVIASSPKEDLSLSEIADSLQLNHGTCANILKTLVNRNYVEQI-GAKKGYKLGYM 66 Query: 70 ADQIT 74 A Q+T Sbjct: 67 AYQLT 71 >gi|325271388|ref|ZP_08137916.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103510|gb|EGC00829.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 236 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 2 HLTKRTDYG---IRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + RTDY + L+ ++ +IAE IS + + L+ L K G+V Sbjct: 22 RIQSRTDYVDEVYKALLDAISDGSLAPGARLTQEEIAEQMNISRSPVLQALRLLKKDGLV 81 Query: 55 ETVRGRR 61 + GR Sbjct: 82 QDAPGRG 88 >gi|251783369|ref|YP_002997674.1| hypothetical protein SDEG_1978 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392001|dbj|BAH82460.1| hypothetical protein SDEG_1978 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323128092|gb|ADX25389.1| hypothetical protein SDE12394_09845 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 149 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL++ + H D + I + IS+ +++ +VK G ++ Sbjct: 37 HVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK 80 >gi|168212698|ref|ZP_02638323.1| transcriptional regulator, GntR family [Clostridium perfringens CPE str. F4969] gi|170715746|gb|EDT27928.1| transcriptional regulator, GntR family [Clostridium perfringens CPE str. F4969] Length = 243 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++A+ +S L + L L G+++ +RG+ Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73 >gi|168209084|ref|ZP_02634709.1| transcriptional regulator, GntR family [Clostridium perfringens B str. ATCC 3626] gi|170712839|gb|EDT25021.1| transcriptional regulator, GntR family [Clostridium perfringens B str. ATCC 3626] Length = 243 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++A+ +S L + L L G+++ +RG+ Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73 >gi|168204433|ref|ZP_02630438.1| transcriptional regulator, GntR family [Clostridium perfringens E str. JGS1987] gi|170663925|gb|EDT16608.1| transcriptional regulator, GntR family [Clostridium perfringens E str. JGS1987] Length = 243 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++A+ +S L + L L G+++ +RG+ Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73 >gi|169342989|ref|ZP_02864017.1| transcriptional regulator, GntR family [Clostridium perfringens C str. JGS1495] gi|169298898|gb|EDS80972.1| transcriptional regulator, GntR family [Clostridium perfringens C str. JGS1495] Length = 243 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++A+ +S L + L L G+++ +RG+ Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73 >gi|110802639|ref|YP_697698.1| transcriptional regulator [Clostridium perfringens SM101] gi|110683140|gb|ABG86510.1| transcriptional regulator, GntR family [Clostridium perfringens SM101] Length = 243 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++A+ +S L + L L G+++ +RG+ Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73 >gi|110801281|ref|YP_694831.1| GntR family transcriptional regulator [Clostridium perfringens ATCC 13124] gi|168216527|ref|ZP_02642152.1| transcriptional regulator, GntR family [Clostridium perfringens NCTC 8239] gi|110675928|gb|ABG84915.1| transcriptional regulator, GntR family [Clostridium perfringens ATCC 13124] gi|182381333|gb|EDT78812.1| transcriptional regulator, GntR family [Clostridium perfringens NCTC 8239] Length = 243 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++A+ +S L + L L G+++ +RG+ Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73 >gi|18309368|ref|NP_561302.1| transcriptional regulator [Clostridium perfringens str. 13] gi|18144044|dbj|BAB80092.1| probable transcriptional regulator [Clostridium perfringens str. 13] Length = 243 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N ++A+ +S L + L L G+++ +RG+ Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73 >gi|16082226|ref|NP_394674.1| transcription regulator LrpA related protein [Thermoplasma acidophilum DSM 1728] gi|10640529|emb|CAC12343.1| transcription regulator LrpA related protein [Thermoplasma acidophilum] Length = 176 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 R L+ A++ + I +I+ IS + +I++ L G ++ G + Sbjct: 14 RELLVLRALYRNSRLSIEEISGETGISRNTVAQIIKKLENEGTIQ-------GYTVRMND 66 Query: 71 DQITILDVVKATEESFFVAE 90 D+ + V+ + + Sbjct: 67 DK--LETVIAVVNGPIDIPD 84 >gi|302526568|ref|ZP_07278910.1| predicted protein [Streptomyces sp. AA4] gi|302435463|gb|EFL07279.1| predicted protein [Streptomyces sp. AA4] Length = 334 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L A+ P +++A ++ + K L +AG+VE+ R Sbjct: 270 RALHALAV----PRSTAELAGEIGVTPVAASKHTSVLRRAGLVESQR 312 >gi|227548799|ref|ZP_03978848.1| possible transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079129|gb|EEI17092.1| possible transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 139 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKA 81 P+ + QI S+ + + L+ L K+G+V+ R GR L PA I+D++ Sbjct: 19 SPHVVHQIVSKLEKSQPLISQHLRVLKKSGLVDATRAGREVVYSLAEPA----IIDIIFQ 74 Query: 82 TEESFFVAECFASHKID 98 V C + Sbjct: 75 L-ADLAVVHCAGEGNDE 90 >gi|108799593|ref|YP_639790.1| helix-turn-helix, type 11 [Mycobacterium sp. MCS] gi|119868703|ref|YP_938655.1| helix-turn-helix, type 11 domain-containing protein [Mycobacterium sp. KMS] gi|108770012|gb|ABG08734.1| Helix-turn-helix, type 11 [Mycobacterium sp. MCS] gi|119694792|gb|ABL91865.1| Helix-turn-helix, type 11 domain protein [Mycobacterium sp. KMS] Length = 230 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68 + L+ + P +++A+ +S+ + + +Q L AG+ + G GG + R Sbjct: 7 LYALVDLLRGSRRPLSAARLADEFEVSKRTIERDIQSLQLAGVPIYADHGVSGGYSILRE 66 Query: 69 ---PADQITI 75 P +T+ Sbjct: 67 HSLPPLNLTV 76 >gi|27378925|ref|NP_770454.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352075|dbj|BAC49079.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 282 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 22/39 (56%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + P QI EA I+ + ++++ L + GIVE RGR Sbjct: 218 EMPLTQEQIGEALGITAVHANRVIKQLRQEGIVEFQRGR 256 >gi|302870137|ref|YP_003838774.1| helix-turn-helix type 11 domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302572996|gb|ADL49198.1| helix-turn-helix type 11 domain protein [Micromonospora aurantiaca ATCC 27029] Length = 330 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + + +++A +SE +++ + L AG+ V RGR GG RL Sbjct: 9 LVLLLQSRETMTAAELARELEVSERTVYRDVLALSAAGVPVYADRGRAGGYRL 61 >gi|313144411|ref|ZP_07806604.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129442|gb|EFR47059.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 183 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 12 RVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60 +VL Y + + D + ++Q IA A I+ L + L+ L GI+ T +G+ Sbjct: 129 KVLSYLSHNKDSLHTLTQRHIANALNIAPESLSRTLKTLKAQGILTTHKGK 179 >gi|293605806|ref|ZP_06688179.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292815801|gb|EFF74909.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 280 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Query: 10 GIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +R L+ + A +P ++Q+A+ + + L ++L + +AG V Sbjct: 32 SLRALIVLDHLARAQ-HPPTLAQLAQRLDMPKTTLMRLLAAMQRAGFVAAT 81 >gi|284041755|ref|YP_003392095.1| hypothetical protein Cwoe_0284 [Conexibacter woesei DSM 14684] gi|283945976|gb|ADB48720.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM 14684] Length = 332 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +AE ++ + + + L + G V+ RG GG RL A+ Sbjct: 22 SGTDLAERLDVTTRTVRRDVDKLRELGYPVDATRGVAGGYRLGAGAE 68 >gi|302547934|ref|ZP_07300276.1| IclR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465552|gb|EFL28645.1| IclR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 247 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +R+L A H P + ++ + + + + + L L +AG + RG Sbjct: 7 SLRILEAVAQHQ--PVTVGELTKIFGLPKSTVQRTLVTLNEAGWLRASRG 54 >gi|224437966|ref|ZP_03658908.1| hypothetical protein HcinC1_08333 [Helicobacter cinaedi CCUG 18818] Length = 190 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 12 RVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60 +VL Y + + D + ++Q IA A I+ L + L+ L GI+ T +G+ Sbjct: 136 KVLSYLSHNKDSLHTLTQRHIANALNIAPESLSRTLKTLKAQGILTTHKGK 186 >gi|254391847|ref|ZP_05007041.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197705528|gb|EDY51340.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 119 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M LT M H P S++A SE + + L+ L +AG+V + R Sbjct: 40 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRSLRILREAGLVRSTR 92 >gi|159897242|ref|YP_001543489.1| helix-turn-helix type 11 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890281|gb|ABX03361.1| Helix-turn-helix type 11 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 319 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 + + R +++A IS+ + + + L GI VE RG G L R Sbjct: 15 LQSHQRMRGAELASRLEISQRTVRRYVVMLQDMGIPVEAERGPDGAYYLGR 65 >gi|290954987|ref|YP_003486169.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260644513|emb|CBG67598.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 370 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 11 IRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +R L + ++ P ++A I+E L K L+ L +AG+VE R R G Sbjct: 285 LRALADDTRLRTLRLISEQPRSTQELAPLVGITEAGLSKQLRVLSEAGLVE--RRREGYY 342 Query: 65 RLCR 68 L R Sbjct: 343 VLYR 346 >gi|289207949|ref|YP_003460015.1| ribonuclease BN [Thioalkalivibrio sp. K90mix] gi|288943580|gb|ADC71279.1| ribonuclease BN [Thioalkalivibrio sp. K90mix] Length = 452 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 22/145 (15%) Query: 2 HLT--KRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L+ R G+ ++ P + +A + L ++ Q L AG++ Sbjct: 315 RLSGAARERMGLHLMQQVGQRFLDGRSPPTLDHVAHDLSVPGNALGEVAQALESAGLL-- 372 Query: 57 VRGRRGG-----VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 R G R ++I + ++++A + A + L G + + L Sbjct: 373 ---VRAGTDATCYVPGRDLERIRVDEILEALRQD-------ADARALRRLQGDPAVEATL 422 Query: 112 RKALNAFFDVLTQYSIECLVRNRSS 136 + A D L ++ L+++ + Sbjct: 423 EELETARRDHLDGRTLRDLLKSEGA 447 >gi|213156131|ref|YP_002318551.1| transcriptional regulator, GntR family [Acinetobacter baumannii AB0057] gi|215484134|ref|YP_002326359.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii AB307-0294] gi|301344961|ref|ZP_07225702.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii AB056] gi|301510279|ref|ZP_07235516.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii AB058] gi|301595336|ref|ZP_07240344.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii AB059] gi|332855259|ref|ZP_08435781.1| transcriptional regulator, GntR family [Acinetobacter baumannii 6013150] gi|332867992|ref|ZP_08437964.1| transcriptional regulator, GntR family [Acinetobacter baumannii 6013113] gi|213055291|gb|ACJ40193.1| transcriptional regulator, GntR family [Acinetobacter baumannii AB0057] gi|213989122|gb|ACJ59421.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii AB307-0294] gi|332727551|gb|EGJ58974.1| transcriptional regulator, GntR family [Acinetobacter baumannii 6013150] gi|332733621|gb|EGJ64781.1| transcriptional regulator, GntR family [Acinetobacter baumannii 6013113] Length = 239 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|150399140|ref|YP_001322907.1| helix-turn-helix type 11 domain-containing protein [Methanococcus vannielii SB] gi|150011843|gb|ABR54295.1| Helix-turn-helix type 11 domain protein [Methanococcus vannielii SB] Length = 144 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ + +L + +IA + + ++ L G V+T +G+ Sbjct: 1 MKIDGITEQILTIL-------EKYTTTKEIAMELKTHPKNIDRYIRVLRDLGFVDTKKGK 53 Query: 61 RGGVRLC 67 GGV L Sbjct: 54 TGGVFLT 60 >gi|108801153|ref|YP_641350.1| ArsR family transcriptional regulator [Mycobacterium sp. MCS] gi|119870285|ref|YP_940237.1| ArsR family transcriptional regulator [Mycobacterium sp. KMS] gi|126436987|ref|YP_001072678.1| ArsR family transcriptional regulator [Mycobacterium sp. JLS] gi|108771572|gb|ABG10294.1| transcriptional regulator, ArsR family [Mycobacterium sp. MCS] gi|119696374|gb|ABL93447.1| transcriptional regulator, ArsR family [Mycobacterium sp. KMS] gi|126236787|gb|ABO00188.1| transcriptional regulator, ArsR family [Mycobacterium sp. JLS] Length = 117 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R+L+ + + YP S +AE +S L L L G+V V GRR L P Sbjct: 29 RILLRLSRASGYP---SDLAEQLGVSRQILSNHLACLRGCGLVVAVPEGRRSRYELADP- 84 Query: 71 DQITILDVVKATEESFFVAE----CFASHKIDCP 100 I + + C C Sbjct: 85 ---RIGAALDDLMGLVLAVDPNCCCTGDDGDGCR 115 >gi|71910853|ref|YP_282403.1| phage protein [Streptococcus pyogenes MGAS5005] gi|139473354|ref|YP_001128069.1| hypothetical protein SpyM50484 [Streptococcus pyogenes str. Manfredo] gi|71853635|gb|AAZ51658.1| phage protein [Streptococcus pyogenes MGAS5005] gi|134271600|emb|CAM29826.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo] Length = 117 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAG-IVETVRGRRGGVRLC-- 67 R+ Y I ++ +I I L I+ +V G ++ + R + GG L Sbjct: 11 RIFCYLPIGSNMMVNSKEICRTFDIKDPKTLRDIIHGMVMKGYLIGSSRRKGGGYYLIDN 70 Query: 68 --RPADQITILD 77 A+ I+ L+ Sbjct: 71 DDERAEAISSLE 82 >gi|310288071|ref|YP_003939330.1| transcription regulator ArsR [Bifidobacterium bifidum S17] gi|309252008|gb|ADO53756.1| transcription regulator ArsR [Bifidobacterium bifidum S17] Length = 201 Score = 38.0 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRL 66 +R+L + + P + QIAE S + L+ L KAG V G L Sbjct: 37 LRILTVMS--DTEPVTVGQIAEQLGESAGTVSYHLKQLEKAGFVTQTPSPDGDNRRSYWL 94 Query: 67 C 67 Sbjct: 95 A 95 >gi|284989054|ref|YP_003407608.1| MarR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062299|gb|ADB73237.1| transcriptional regulator, MarR family [Geodermatophilus obscurus DSM 43160] Length = 171 Score = 38.0 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 11/68 (16%) Query: 2 HLTKRTDYGIR-----------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50 +T+R D + L A + ++AEA IS + + LV Sbjct: 44 RITRRVDSALHRRHDLSLTGYEALRRIAEAPGERATMGEVAEALGISRAGVTSTVSRLVA 103 Query: 51 AGIVETVR 58 G V R Sbjct: 104 EGYVVRER 111 >gi|330839241|ref|YP_004413821.1| biotin/acetyl-CoA-carboxylase ligase [Selenomonas sputigena ATCC 35185] gi|329747005|gb|AEC00362.1| biotin/acetyl-CoA-carboxylase ligase [Selenomonas sputigena ATCC 35185] Length = 326 Score = 38.0 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L + +IA+ +S ++K ++ L +AG R R G L D Sbjct: 4 RILELLRKAGEEYMSGEEIAKRLGVSRTAVWKHIKELREAGYGIKSRSRSG-YALEETPD 62 >gi|313634176|gb|EFS00831.1| MarR family transcriptional regulator [Listeria seeligeri FSL N1-067] gi|313638799|gb|EFS03879.1| MarR family transcriptional regulator [Listeria seeligeri FSL S4-171] Length = 156 Score = 38.0 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRL 66 + + Y A H+D + ++++AEA +++ + K+ + L++ G VE+ + RL Sbjct: 38 VHCMEYIAKHDD--SNVTKLAEAFYMTKSAISKLTKKLIEKGFVESYQKPENKKEIYFRL 95 Query: 67 CRPADQIT 74 + +I Sbjct: 96 TKKGAEIN 103 >gi|307326305|ref|ZP_07605501.1| transcriptional regulator, MarR family [Streptomyces violaceusniger Tu 4113] gi|306887968|gb|EFN18958.1| transcriptional regulator, MarR family [Streptomyces violaceusniger Tu 4113] Length = 160 Score = 38.0 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 26/130 (20%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A+ + P R S++A A + + L+ L + G V +R R Sbjct: 50 LMMALWDAGPVRQSELARALDLDPSTVTLTLRRLEQGGYV--IR--------ARDPHDRR 99 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134 + +V+A+EES+ + + V + D L E R Sbjct: 100 V-MLVRASEESYALRP---------------KVAEVWGQLEEHILDGLDDAEREAFARLL 143 Query: 135 SSIKKIFNAG 144 S ++K G Sbjct: 144 SKVEKNLAPG 153 >gi|297161193|gb|ADI10905.1| DeoR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 334 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 IR+++ + +++A +SE + + + L +AG+ V RGR GG RL Sbjct: 7 IRLVLLL--QSRPSMTGAELARELEVSERTVTRDVAALSEAGVPVYADRGRSGGYRL 61 >gi|316933157|ref|YP_004108139.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1] gi|315600871|gb|ADU43406.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1] Length = 118 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ + H D + +I + I+ L L L G+V++ R Sbjct: 23 LRIMRTLLSAHPDGLV-VGEIGDELGIAPSTLSHHLDKLKNEGLVQSRR 70 >gi|229084451|ref|ZP_04216729.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44] gi|228698826|gb|EEL51533.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44] Length = 126 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + + ++A ++ + + Q L + GIV T RG Sbjct: 29 LPGDKISSVRELASELQVNPNTIQRTFQELERDGIVVTRRGMG 71 >gi|226306846|ref|YP_002766806.1| MarR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226185963|dbj|BAH34067.1| putative MarR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 178 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62 VL + D+ ++S +A+ S L ++ + KAG V E +RG RG Sbjct: 65 VLAALSDAPDHKLQLSVLAQRANASLSRLSHVVTKMEKAGWVKREVIRGSRG 116 >gi|83590159|ref|YP_430168.1| GntR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573073|gb|ABC19625.1| transcriptional regulator, GntR family [Moorella thermoacetica ATCC 39073] Length = 243 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++++E +S + + + L L +AG++ + +G+ Sbjct: 29 RPGDTLPSEAELSEKYGLSRMTVRRSLSQLARAGLIYSEQGKG 71 >gi|54024712|ref|YP_118954.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016220|dbj|BAD57590.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 320 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 S++A+ +S + + L G V+ G GG RL Sbjct: 18 GRDWTSSELADRLAVSTRTVRADIGKLRSLGYPVDARPGVAGGYRLA 64 >gi|313617821|gb|EFR90032.1| conserved hypothetical protein [Listeria innocua FSL S4-378] Length = 141 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L DYG+RV A+ +A+ S+ + K+L L + GI+E+ + Sbjct: 63 LNTMIDYGLRV-SEKAVELPKFLTYQILADNSNTSKSYTSKVLSNLREKGILESQK 117 >gi|260886973|ref|ZP_05898236.1| biotin-[acetyl-CoA-carboxylase] ligase [Selenomonas sputigena ATCC 35185] gi|260863035|gb|EEX77535.1| biotin-[acetyl-CoA-carboxylase] ligase [Selenomonas sputigena ATCC 35185] Length = 328 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L + +IA+ +S ++K ++ L +AG R R G L D Sbjct: 6 RILELLRKAGEEYMSGEEIAKRLGVSRTAVWKHIKELREAGYGIKSRSRSG-YALEETPD 64 >gi|302531523|ref|ZP_07283865.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302440418|gb|EFL12234.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 318 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++E +S + ++ L G VE RG GG RL Sbjct: 22 SGRELSERLGVSARTIRSDVERLRDLGYPVEATRGNVGGYRLG 64 >gi|229492612|ref|ZP_04386415.1| transcriptional regulator, GntR family [Rhodococcus erythropolis SK121] gi|229320598|gb|EEN86416.1| transcriptional regulator, GntR family [Rhodococcus erythropolis SK121] Length = 386 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 15/114 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 D ++AE +S L +L L +AGI + GR GG + + Sbjct: 151 RPGDRLPSERELAEHFQVSRSTLRGVLTGLCQAGITHRLPGRAGGTFIAQ---------- 200 Query: 79 VKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFFDVL---TQYSIE 128 + E + S+ GS L++VL+ + L Q S+ Sbjct: 201 -RKFERDLDRVDGLPSYLARQGMTSGSQVLSAVLQNPEQSIRIRLGLDDQTSLA 253 >gi|118472439|ref|YP_891061.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] gi|16508062|gb|AAL17928.1| putative transcription regulator [Mycobacterium smegmatis str. MC2 155] gi|118173726|gb|ABK74622.1| putative transcription regulator [Mycobacterium smegmatis str. MC2 155] Length = 256 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 G+ VL A P + +A +SE F+ILQ L G V GR G RL Sbjct: 8 GLHVLETLAGMR-QPATLRDVAARAGLSESNAFRILQALENEGYVH-HLGRSG-YRLA 62 >gi|119385928|ref|YP_916983.1| regulatory protein GntR, HTH [Paracoccus denitrificans PD1222] gi|119376523|gb|ABL71287.1| transcriptional regulator, GntR family [Paracoccus denitrificans PD1222] Length = 236 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R++ Y +++ + +S L + L+ L G++E G GG+ + RP Sbjct: 16 RIITDNLASGSYLGTEAELLQQFNVSRPTLRESLRILETQGVIELRPGPGGGIMITRPGT 75 Query: 72 QI 73 I Sbjct: 76 DI 77 >gi|312141915|ref|YP_004009251.1| transcriptional regulator [Rhodococcus equi 103S] gi|311891254|emb|CBH50573.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 127 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 39/134 (29%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-----------------TVR--G 59 QIA + + + + ++L L KAG+ + R G Sbjct: 9 RRGHEVTTSEQIATSVNTNPVVIRRLLSELRKAGLADSRRGRAGRSRGTWRRSPARRLPG 68 Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 R G L RPA + T+ EC H +T+V A Sbjct: 69 DRTGTGL-RPAS--------RDTDP-----ECVVGHGSGP------AMTAVFDDVEAALR 108 Query: 120 DVLTQYSIECLVRN 133 L + ++E ++R+ Sbjct: 109 RELAKTTLEDVLRD 122 >gi|302540245|ref|ZP_07292587.1| GntR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457863|gb|EFL20956.1| GntR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 236 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+R D ++AE IS + + + L G+VE +G GG+RL R Sbjct: 30 GLRA-------GDRLPTERELAERLGISRASVKQAIVVLEVQGLVEVRQG--GGMRLLRD 80 >gi|271966670|ref|YP_003340866.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509845|gb|ACZ88123.1| putative transcriptional regulator, ArsR family [Streptosporangium roseum DSM 43021] Length = 337 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R + I D S++A +S K Q L AG++ + R Sbjct: 262 ATRAAILRTIAADQGCSTSELARRIGVSVSNASKHAQVLHHAGLITSTR 310 >gi|225848602|ref|YP_002728765.1| transcriptional regulator [Sulfurihydrogenibium azorense Az-Fu1] gi|225643529|gb|ACN98579.1| transcriptional regulator [Sulfurihydrogenibium azorense Az-Fu1] Length = 264 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 6 RTDYGIR-------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++DY + +L Y A + + E +S L KIL+ LV G ++ Sbjct: 7 KSDYIVHNVDLAFDILFYIARKQS--VKTKDLEEKFNVSPTTLEKILETLVIRGYLD 61 >gi|116621700|ref|YP_823856.1| MarR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224862|gb|ABJ83571.1| transcriptional regulator, MarR family with acetyltransferase activity [Candidatus Solibacter usitatus Ellin6076] Length = 317 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%) Query: 7 TDYGI---RVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVE 55 T+Y + RVL A + P +IA+ + +L ++L L +AG+++ Sbjct: 39 TEYSLAEARVLYELA---NRPAPAAKEIADELGMDAGYLSRLLGKLQRAGLLK 88 >gi|293608809|ref|ZP_06691112.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829382|gb|EFF87744.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 239 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|227874639|ref|ZP_03992802.1| possible transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|269977560|ref|ZP_06184527.1| regulatory protein GntR, HTH [Mobiluncus mulieris 28-1] gi|306817925|ref|ZP_07451663.1| GntR family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|307701321|ref|ZP_07638342.1| transcriptional regulator, GntR family [Mobiluncus mulieris FB024-16] gi|227844848|gb|EEJ54994.1| possible transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|269934163|gb|EEZ90730.1| regulatory protein GntR, HTH [Mobiluncus mulieris 28-1] gi|304649268|gb|EFM46555.1| GntR family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|307613482|gb|EFN92730.1| transcriptional regulator, GntR family [Mobiluncus mulieris FB024-16] Length = 125 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 12/64 (18%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG------------RRGGVRLCRPADQI 73 + ++A A ++ + K L L + G+ ET RG R G RL A +I Sbjct: 34 SVRELAAAHGVNPNTVQKALVELERVGVAETRRGLGRYVTDNAAAIRSLGRRLACEAARI 93 Query: 74 TILD 77 + D Sbjct: 94 FVAD 97 >gi|325914744|ref|ZP_08177082.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325539021|gb|EGD10679.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 321 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78 + +A + L + ++ L + G V V G GG RL + A + +L Sbjct: 16 QGGRNWSGAALAGRLEVHPRSLRRDIERLRELGYQVHAVPGSGGGYRLGQGAAALPLL-- 73 Query: 79 VKATEESFFVA 89 EE + Sbjct: 74 ---FEEEEALT 81 >gi|291484666|dbj|BAI85741.1| bifunctional protein BirA [Bacillus subtilis subsp. natto BEST195] Length = 325 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R D L+ + + +I++A S ++K ++ L K G VE VR Sbjct: 1 MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55 Query: 59 GRRGGVRLCRPA-----DQITIL 76 + G RL + +I Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76 >gi|257868961|ref|ZP_05648614.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257803125|gb|EEV31947.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 243 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A N ++ E +S L + L L K G + ++GR Sbjct: 22 DLADRNGKLPSEKELMEHYQVSRYSLRQALSRLSKRGYIYQIQGRG 67 >gi|152986143|ref|YP_001349213.1| hypothetical protein PSPA7_3859 [Pseudomonas aeruginosa PA7] gi|150961301|gb|ABR83326.1| hypothetical protein PSPA7_3859 [Pseudomonas aeruginosa PA7] Length = 323 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ + + S++A + L + + L + GI + + RGR GG RL Sbjct: 8 VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPIASERGRHGGYRL 63 >gi|41350168|gb|AAS00430.1| transcriptional regulator, GntR family [Saccharopolyspora spinosa NRRL 18395] Length = 246 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++AE +S + + Q LV G+V +RGR Sbjct: 36 AELAERYGLSRQTVRRAFQDLVSEGLVYRIRGRG 69 >gi|187479055|ref|YP_787080.1| IclR family transcriptional regulator [Bordetella avium 197N] gi|115423642|emb|CAJ50186.1| IclR-family transcriptional regulator [Bordetella avium 197N] Length = 251 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--LC 67 G+ VL + ++ IA I ++++L L +AG+V TV G + R L Sbjct: 17 GLAVLATLRDQGPHGLSVTDIARQTGIQRPTIYRLLAALREAGLVSTVHGTK-KYRAELG 75 Query: 68 RPADQIT 74 D ++ Sbjct: 76 GEPDAVS 82 >gi|84684173|ref|ZP_01012075.1| regulatory proteins, IclR [Maritimibacter alkaliphilus HTCC2654] gi|84667926|gb|EAQ14394.1| regulatory proteins, IclR [Rhodobacterales bacterium HTCC2654] Length = 247 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +RVL A + P +S +A + + + L V AG+ G+ G L Sbjct: 13 ALRVLEAMA-QANAPLSLSDLARRVDMPASKVHRYLASFVNAGL-AAQAGKSGKYDLG-- 68 Query: 70 ADQITIL 76 I + Sbjct: 69 PGAIALG 75 >gi|328883284|emb|CCA56523.1| Transcriptional regulator, ArsR family [Streptomyces venezuelae ATCC 10712] Length = 396 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P S++A+A I+ + + L L KAG++ T R RG L Sbjct: 334 GPYSTSELADAYGITAPEVSRHLSVLKKAGLLTTQR--RGRYVL 375 >gi|331699646|ref|YP_004335885.1| GntR domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954335|gb|AEA28032.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190] Length = 239 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-ADQ 72 + ++A +S L + L+ L +G +E RG GG + P ++ Sbjct: 36 VAGQRLPSEPELAGQLGVSRPMLREALKALEVSGYLEVRRGYGGGRFVAMPEPEE 90 >gi|226307008|ref|YP_002766968.1| arsenic resistance operon repressor ArsR [Rhodococcus erythropolis PR4] gi|226186125|dbj|BAH34229.1| putative arsenic resistance operon repressor ArsR [Rhodococcus erythropolis PR4] Length = 128 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I+++ +S+ + L+ L +AG+++ R Sbjct: 42 LRLLSLVASHEGGEACVCDISDSFDLSQPTISHHLKVLRQAGLLDCER 89 >gi|126460243|ref|YP_001056521.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM 11548] gi|126249964|gb|ABO09055.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM 11548] Length = 248 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-----VRLCRP 69 +Y A+ P ++AEA I ++ L L G+V + GG R RP Sbjct: 20 IYVALVEQGPKSARELAEALGIPYTKIYTYLYKLENLGVVA----KEGGGRPYRYR-ARP 74 Query: 70 ADQI 73 ++ Sbjct: 75 PAEV 78 >gi|52785729|ref|YP_091558.1| hypothetical protein BLi01972 [Bacillus licheniformis ATCC 14580] gi|52348231|gb|AAU40865.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 234 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 R +++ + + ++AE IS + + L+ L G+VE V G Sbjct: 37 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPG 84 >gi|330469443|ref|YP_004407186.1| AraC family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812414|gb|AEB46586.1| AraC family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 288 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + + H D P I+++A SE ++ L + E VR R RL A + Sbjct: 8 AMEHLEQHLDRPVEIAELARIAVTSEYHFRRLFSALAGIPLSEYVRRR----RLTMAAAE 63 Query: 73 I-----TILDV 78 + T+LD+ Sbjct: 64 VVSGERTLLDI 74 >gi|325121427|gb|ADY80950.1| GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex [Acinetobacter calcoaceticus PHEA-2] Length = 239 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|299771016|ref|YP_003733042.1| Pyruvate dehydrogenase complex repressor [Acinetobacter sp. DR1] gi|298701104|gb|ADI91669.1| Pyruvate dehydrogenase complex repressor [Acinetobacter sp. DR1] Length = 239 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|289750275|ref|ZP_06509653.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289690862|gb|EFD58291.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 535 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +L H ++ ++I E ++ + +IL L G+V + RG RG RL Sbjct: 295 AAELLRVLQAHPGGLSQ-AEIGERVGMARSTVSRILNALEDEGLVAS-RGARGPYRLGP- 351 Query: 70 ADQIT 74 +IT Sbjct: 352 --EIT 354 >gi|260428779|ref|ZP_05782756.1| histidine utilization repressor [Citreicella sp. SE45] gi|260419402|gb|EEX12655.1| histidine utilization repressor [Citreicella sp. SE45] Length = 245 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +AEA +S + + K+L L + G + VR RRGG + +P Q ++++ Sbjct: 37 TDLAEAHGVSRMTMNKVLTQLAQEGYL--VRRRRGGTFVAQPRAQSAVMEI 85 >gi|229489079|ref|ZP_04382945.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229324583|gb|EEN90338.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 324 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE IS + + + L + G + G GG RL Sbjct: 25 LAERLDISHRTVRRDIDRLREMGYRIAATMGPDGGYRL 62 >gi|118431168|ref|YP_874841.1| hypothetical protein APE_0720a [Aeropyrum pernix K1] gi|116062492|dbj|BAF34744.1| hypothetical protein [Aeropyrum pernix K1] Length = 81 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R L + + +I+++ I ++Q L+ +V+ + +G L + Sbjct: 12 LRALRFL-REKPQGASLKEISDSLGIPPSSAHGLMQKLLALNLVD--KNGQGKYYLTKAG 68 Query: 71 DQI--TILDVV 79 +Q+ I ++ Sbjct: 69 EQVLEKIGAII 79 >gi|52080350|ref|YP_079141.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52003561|gb|AAU23503.1| probable transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 220 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 R +++ + + ++AE IS + + L+ L G+VE V G Sbjct: 23 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPG 70 >gi|302554242|ref|ZP_07306584.1| IclR-family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302471860|gb|EFL34953.1| IclR-family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 262 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L+ A + P+R+ Q+A+ + ++++LQ LV +G V T Sbjct: 18 ALLELLAGRGEEPSRLDQLAQDLGVPRSSMYQLLQTLVDSGWVRT 62 >gi|292493520|ref|YP_003528959.1| cyclic nucleotide-binding protein [Nitrosococcus halophilus Nc4] gi|291582115|gb|ADE16572.1| cyclic nucleotide-binding protein [Nitrosococcus halophilus Nc4] Length = 214 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 6/50 (12%) Query: 12 RVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVE 55 R L+ A D I + IA+ S + +I+ L G +E Sbjct: 149 RTLLDLATEKDGKLIIEERPTHQEIAQRVGASREMVSRIMGDLATGGYIE 198 >gi|289434105|ref|YP_003463977.1| transcriptional regulator, MarR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170349|emb|CBH26889.1| transcriptional regulator, MarR family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 156 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRL 66 + + Y A H D + ++++AEA +++ + K+ + L++ G VE+ + RL Sbjct: 38 VHCMEYIAKHED--SNVTKLAEAFYMTKSAISKLTKKLIEKGFVESYQKPENKKEIYFRL 95 Query: 67 CRPADQIT 74 + +I Sbjct: 96 TKKGAEIN 103 >gi|192292445|ref|YP_001993050.1| MarR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192286194|gb|ACF02575.1| transcriptional regulator, MarR family [Rhodopseudomonas palustris TIE-1] Length = 118 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ + H D + +I + I+ L L L G+V++ R Sbjct: 23 LRIMRTLLSAHPDGLV-VGEIGDELGIAPSTLSHHLDKLKNEGLVQSRR 70 >gi|39936623|ref|NP_948899.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39650479|emb|CAE29002.1| transcriptional regulator, ArsR family [Rhodopseudomonas palustris CGA009] Length = 118 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ + H D + +I + I+ L L L G+V++ R Sbjct: 23 LRIMRTLLSAHPDGLV-VGEIGDELGIAPSTLSHHLDKLKNEGLVQSRR 70 >gi|239833844|ref|ZP_04682172.1| transcriptional regulator, GntR family [Ochrobactrum intermedium LMG 3301] gi|239821907|gb|EEQ93476.1| transcriptional regulator, GntR family [Ochrobactrum intermedium LMG 3301] Length = 256 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 1 MHLTKRTDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L + + IR L+ + IAE IS + + K + LVKAG++ Sbjct: 26 MQLRQSLEAAIRAGQLVD----GEALPPERDIAEYANISRVTVRKAVDDLVKAGLLVRRH 81 Query: 59 GRR 61 G Sbjct: 82 GSG 84 >gi|271968984|ref|YP_003343180.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512159|gb|ACZ90437.1| putative transcriptional regulator, ArsR family [Streptosporangium roseum DSM 43021] Length = 333 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L A ND S++A IS Q L +AG++ + R Sbjct: 265 RILRCVATTND--CTTSELARRTGISLSSASAHAQVLRRAGLITSTR 309 >gi|229490283|ref|ZP_04384125.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229322815|gb|EEN88594.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 321 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R L ++ + +++A +++ + + + L G V++ G+ GG RL Sbjct: 8 RALQLLSLLQTHRFWHCAELAARLDVTQRTVRRDIDRLRDLGYPVDSTSGKYGGYRLA 65 >gi|16079301|ref|NP_390125.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis subsp. subtilis str. 168] gi|221310160|ref|ZP_03592007.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221314482|ref|ZP_03596287.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319404|ref|ZP_03600698.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323680|ref|ZP_03604974.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi|317374856|sp|P0CI75|BIRA_BACSU RecName: Full=Bifunctional protein BirA; Includes: RecName: Full=Biotin operon repressor; Includes: RecName: Full=Biotin--[acetyl-CoA-carboxylase] synthetase; AltName: Full=Biotin--protein ligase gi|1146239|gb|AAB38447.1| biotin [acetyl-CoA-carboxylase] ligase [Bacillus subtilis subsp. subtilis str. 168] gi|2634662|emb|CAB14160.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis subsp. subtilis str. 168] Length = 325 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R D L+ + + +I++A S ++K ++ L K G VE VR Sbjct: 1 MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55 Query: 59 GRRGGVRLCRPA-----DQITIL 76 + G RL + +I Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76 >gi|332967764|gb|EGK06870.1| MarR family transcriptional regulator [Desmospora sp. 8437] Length = 140 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L Y A H+ P S+++ +S + ++ LVK G V R Sbjct: 42 LKYLATHD--PRSPSELSAVLEVSASHVTQVTDSLVKKGWVRRYRSP 86 >gi|300790689|ref|YP_003770980.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|299800203|gb|ADJ50578.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] Length = 323 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L++ + +++A +SE + + L L +AG+ + T +GR GG RL Sbjct: 6 LVALLF-TLQRRRSATAAELAGELGVSERTMHRDLAALREAGVPLWTEQGRHGGFRL 61 >gi|227548493|ref|ZP_03978542.1| transcription regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079425|gb|EEI17388.1| transcription regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 143 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 7 TDYG-----------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 T Y +R+L A P ++++ E +S+ + L+ + +AG++E Sbjct: 57 TRYAALFKVLAEPVRLRILSQLAAGGCGPVSVNELTELMGLSQPTISHHLKKMTEAGLLE 116 >gi|194018072|ref|ZP_03056677.1| GntR family transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194010264|gb|EDW19841.1| GntR family transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 492 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 17/45 (37%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A+ +S + K L G + TV+G+ Sbjct: 29 LLQQGDKLPTVRDLAKQLNVSLVTAAKAYTRLKDDGYLTTVQGKG 73 >gi|332672053|ref|YP_004455061.1| DeoR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332341091|gb|AEE47674.1| DeoR family transcriptional regulator [Cellulomonas fimi ATCC 484] Length = 337 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 H D+P ++AE + + + + L G +++ +GR GG RL Sbjct: 16 AHRDWPG--QELAERLGTTSRTVRRDVDRLRTMGYRIDSAKGRAGGYRL 62 >gi|321311713|ref|YP_004204000.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis BSn5] gi|320017987|gb|ADV92973.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis BSn5] Length = 325 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R D L+ + + +I++A S ++K ++ L K G VE VR Sbjct: 1 MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55 Query: 59 GRRGGVRLCRPA-----DQITIL 76 + G RL + +I Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76 >gi|262279751|ref|ZP_06057536.1| GntR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262260102|gb|EEY78835.1| GntR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 239 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +A +S + + + L L G+++T RGR GG +C Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87 >gi|283795506|ref|ZP_06344659.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. M62/1] gi|291077171|gb|EFE14535.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. M62/1] gi|295091188|emb|CBK77295.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Clostridium cf. saccharolyticum K10] Length = 326 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +L Y D ++ E +S ++K+++ L G +E VR R G RL D Sbjct: 5 ILRYL-KEADGYISGQELCERFQVSRTAVWKVVRQLEAEGYEIEAVRNR--GYRLKTAGD 61 Query: 72 QITILDVVKATEESFFVAECFASHKID 98 ++ +++ + S+ E ++D Sbjct: 62 ILSQAEILSSIRGSWAGREILYLDEVD 88 >gi|225569861|ref|ZP_03778886.1| hypothetical protein CLOHYLEM_05955 [Clostridium hylemonae DSM 15053] gi|225161331|gb|EEG73950.1| hypothetical protein CLOHYLEM_05955 [Clostridium hylemonae DSM 15053] Length = 326 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + Q+ ++ +S ++K+++ L K G +E VR R G RL D Sbjct: 10 RESGGYVSGQQLCDSFGVSRTAVWKVIEQLKKEGYEIEAVRSR--GYRLVESPD 61 >gi|254385957|ref|ZP_05001274.1| hypothetical protein SSAG_05616 [Streptomyces sp. Mg1] gi|194344819|gb|EDX25785.1| hypothetical protein SSAG_05616 [Streptomyces sp. Mg1] Length = 98 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R L A+H + +++ I ++ +L+ L G V R G RL Sbjct: 38 RALRLVEAMHAEGEATAKRLSRVTGIPLPTVYHLLRTLSHEGYV---RREHGAFRLAED 93 >gi|157691299|ref|YP_001485761.1| GntR family transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680057|gb|ABV61201.1| GntR family transcriptional regulator [Bacillus pumilus SAFR-032] Length = 492 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 17/45 (37%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A+ +S + K L G + TV+G+ Sbjct: 29 LLQQGDKLPTVRDLAKQLNVSLVTAAKAYTRLKDDGYLTTVQGKG 73 >gi|29827897|ref|NP_822531.1| GntR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29604998|dbj|BAC69066.1| putative GntR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 256 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 10 GIRVLMYCAI------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +R + A+ + +QIA A +SE+ + L L G++E RGR GG Sbjct: 28 AVRARIALAVDLGLLSPGERLPGTAQIARALDVSEITARRALVSLCGDGVLERRRGRNGG 87 Query: 64 VRLCRPA 70 + Sbjct: 88 TLVAAHP 94 >gi|28212074|ref|NP_783018.1| CBS domain-containing cytosolic protein [Clostridium tetani E88] gi|28204517|gb|AAO36955.1| cytosolic protein containing cbs domains [Clostridium tetani E88] Length = 448 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP----ADQITILD 77 + IA ISE +K ++ K GIV T+ R G +R+ +P + IT + Sbjct: 17 GTKISVRTIANLLEISEGTAYKGIKECSKMGIVTTIP-RIGTIRIRKPDYNGEENITYGE 75 Query: 78 VVKATEESFF 87 +V + + Sbjct: 76 IVNIVDGNIA 85 >gi|13475048|ref|NP_106611.1| transposase [Mesorhizobium loti MAFF303099] gi|14025798|dbj|BAB52397.1| transposase [Mesorhizobium loti MAFF303099] Length = 159 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVK---AGIVETVRGRRGGVRLCRPADQITI 75 H IS +A A +S +K L AG+V RG +GG ++ A+ + Sbjct: 55 RHQADRVPISDVASAFGVSRPTFYKAQSALADQGLAGLVPRQRGPKGGHKI--SAEVLAY 112 Query: 76 LDVVKATEESFFVAECFA 93 +D ++ T V +C Sbjct: 113 IDQIRTTRPDLTVPQCVD 130 >gi|85709032|ref|ZP_01040098.1| Transcriptional regulator, ArsR family protein [Erythrobacter sp. NAP1] gi|85690566|gb|EAQ30569.1| Transcriptional regulator, ArsR family protein [Erythrobacter sp. NAP1] Length = 112 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + L D +IA I L L L AG+V + R Sbjct: 13 LSQETR--LETLKLLVRAGDDGLPAGEIARQLDIGSTLLSAHLSKLSNAGLVTSRR 66 >gi|150018173|ref|YP_001310427.1| helix-turn-helix, type 11 domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904638|gb|ABR35471.1| Helix-turn-helix, type 11 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 304 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M +++ ++Y + +++E +S +++ + L +AGI + + +G Sbjct: 1 MQISRLFQ-----IIYILLKRKS-ITARELSEHFEVSVRTIYRDIDALCQAGIPIYSSQG 54 Query: 60 RRGGVRL 66 + GG+ L Sbjct: 55 KGGGISL 61 >gi|319645865|ref|ZP_08000095.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|317391615|gb|EFV72412.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 221 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 R +++ + + ++AE IS + + L+ L G+VE V G Sbjct: 24 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPG 71 >gi|218296341|ref|ZP_03497084.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23] gi|218243135|gb|EED09666.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23] Length = 198 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRG-G--VRLCRP-----ADQI 73 P ++AEA +S + K LQ L G+V + VR G G RL R Sbjct: 19 RPLTAKEVAEALGLSRAAVGKHLQDLEARGLVRSEVRRPSGRGRPYRLYRAQDGESPYAA 78 Query: 74 TILDVVKATEESF 86 DV++ EE+ Sbjct: 79 LCGDVLRGLEEAL 91 >gi|15966321|ref|NP_386674.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307307791|ref|ZP_07587520.1| transcriptional regulator, GntR family [Sinorhizobium meliloti BL225C] gi|307317453|ref|ZP_07596893.1| transcriptional regulator, GntR family [Sinorhizobium meliloti AK83] gi|15075592|emb|CAC47147.1| Transcription regulator GntR family [Sinorhizobium meliloti 1021] gi|306897042|gb|EFN27788.1| transcriptional regulator, GntR family [Sinorhizobium meliloti AK83] gi|306901657|gb|EFN32259.1| transcriptional regulator, GntR family [Sinorhizobium meliloti BL225C] Length = 244 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 11 IRVLMYC-AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R + A ++ + +S + + LQ L ++ET RGR G L R Sbjct: 19 LRAAIESGAYPPGSKLPTEGELCQQYDVSRSVVRQALQSLAHDNLIETERGR-GAFVLER 77 Query: 69 P 69 Sbjct: 78 K 78 >gi|255017472|ref|ZP_05289598.1| hypothetical protein LmonF_06313 [Listeria monocytogenes FSL F2-515] Length = 55 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 14/26 (53%) Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133 + + NA DVL Q ++ L+++ Sbjct: 16 RELWTRMRNAVRDVLDQTTLADLLKH 41 >gi|167584446|ref|ZP_02376834.1| transcriptional regulator, GntR family protein [Burkholderia ubonensis Bu] Length = 271 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +AE +S + + + L + G++E+ RG Sbjct: 64 GEGLPPERDLAERFQVSRDTVRRAIDKLSQQGLIESRRGAG 104 >gi|124441833|gb|ABN11532.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|124441837|gb|ABN11535.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|124441853|gb|ABN11547.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441857|gb|ABN11550.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441861|gb|ABN11553.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441865|gb|ABN11556.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis subsp. subtilis str. SMY] Length = 319 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 9/70 (12%) Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70 L+ + + +I++A S ++K ++ L K G VE VR + G RL + Sbjct: 3 LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 60 Query: 71 ----DQITIL 76 +I Sbjct: 61 KLSESEIRFG 70 >gi|121633826|ref|YP_976064.1| plasmid replication protein [Enterococcus faecium] gi|124111994|ref|YP_001019023.1| putative Rep protein [Enterococcus faecium] gi|307352131|ref|YP_003896005.1| plasmid replication protein [Enterococcus faecalis] gi|121490885|emb|CAL36521.1| plasmid replication protein [Enterococcus faecium] gi|124012096|emb|CAL90927.1| putative Rep protein [Enterococcus faecium] gi|283481173|emb|CAZ67085.1| putative replication protein [Enterococcus faecium] gi|307155369|gb|ADN34750.1| plasmid replication protein [Enterococcus faecalis] Length = 499 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 + ++ E I + L K+L+ L + + GR GG+ L Sbjct: 395 STKKELTERLKIPKRSLDKVLKQLREENKIHFRVRAGRNGGIMLA 439 >gi|69243951|ref|ZP_00602529.1| similar to plasmid replication protein [Enterococcus faecium DO] gi|294615540|ref|ZP_06695399.1| RepE protein [Enterococcus faecium E1636] gi|68196677|gb|EAN11102.1| similar to plasmid replication protein [Enterococcus faecium DO] gi|291591578|gb|EFF23228.1| RepE protein [Enterococcus faecium E1636] Length = 499 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 + ++ E I + L K+L+ L + + GR GG+ L Sbjct: 395 STKKELTERLKIPKRSLDKVLKQLREENKIHFRVRAGRNGGIMLA 439 >gi|332528108|ref|ZP_08404139.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112679|gb|EGJ12472.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 243 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 13 VLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L+ A H D P + +I+E + +IL L +V+ R + G RL Sbjct: 7 ALLDMLAAHPD-PVSLKEISERTGLHPSTAHRILNDLTIGRLVD--RPQAGSYRLGMRLL 63 Query: 72 QITILDVVKA 81 + + ++VKA Sbjct: 64 E--LGNLVKA 71 >gi|326772022|ref|ZP_08231307.1| conserved hypothetical protein [Actinomyces viscosus C505] gi|326638155|gb|EGE39056.1| conserved hypothetical protein [Actinomyces viscosus C505] Length = 370 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 R ++ C +D P++I+ IAE ++ L+ AGI++T Sbjct: 299 RTMLVCMAKDDGPSQIADIAERMDRPVNYVSVYRNRLLAAGIIKT 343 >gi|269960647|ref|ZP_06175019.1| hypothetical protein VME_14030 [Vibrio harveyi 1DA3] gi|269834724|gb|EEZ88811.1| hypothetical protein VME_14030 [Vibrio harveyi 1DA3] Length = 336 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +L Y A H++ P I IAE + + + Q Sbjct: 208 MLEYIATHHNQPITIKDIAEHIGLHTNYAMNVFQR 242 >gi|300769980|ref|ZP_07079859.1| LacI family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762456|gb|EFK59273.1| LacI family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 368 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ A+ + P I +IA IS + + L G+V T+R Sbjct: 29 LIQIAMKKEKPATIKEIARKLKISPSTVSRALNDHPSIGLVTTMR 73 >gi|153834146|ref|ZP_01986813.1| melibiose operon regulatory protein [Vibrio harveyi HY01] gi|148869516|gb|EDL68514.1| melibiose operon regulatory protein [Vibrio harveyi HY01] Length = 332 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +L Y A H++ P I IAE + + + Q Sbjct: 204 MLEYIATHHNQPITIKDIAEHIGLHTNYAMNVFQR 238 >gi|85859535|ref|YP_461737.1| transcriptional regulator [Syntrophus aciditrophicus SB] gi|85722626|gb|ABC77569.1| predicted transcriptional regulator [Syntrophus aciditrophicus SB] Length = 290 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 2 HLTK-RTDYG---IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVET 56 +T+ +T++G +R+L Y + R +IA A I+ ++ + ++G + Sbjct: 18 KITQNKTEFGSLEMRLLAYVQMRKMDVVRTKEIAAALKITPKQERELFSRMSRSGVFIRL 77 Query: 57 VRG--------RRGG-------VRLCRPADQI 73 RG GG L R +I Sbjct: 78 TRGVYLVPPRFPAGGRLAVSEYYILSRLMREI 109 >gi|301321612|gb|ADK69002.1| Transcriptional regulator [Gordonia sp. KTR9] Length = 247 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +A+ +S + L + + L G+VET RGR G Sbjct: 45 DLAQLLGVSPMTLREAMAVLRDEGLVETRRGRNG 78 >gi|293376782|ref|ZP_06623004.1| transcriptional regulator, DeoR family [Turicibacter sanguinis PC909] gi|325845672|ref|ZP_08168955.1| HTH domain protein [Turicibacter sp. HGF1] gi|292644648|gb|EFF62736.1| transcriptional regulator, DeoR family [Turicibacter sanguinis PC909] gi|325488273|gb|EGC90699.1| HTH domain protein [Turicibacter sp. HGF1] Length = 219 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + ++ Y + I ++AE +S + + + L GI + + RG Sbjct: 1 MRL-------LELVFYL-LKCHSKVTIKELAETFDVSTKTIQRDIDKLCVLGIPIISTRG 52 Query: 60 RRGGV 64 + GG+ Sbjct: 53 KNGGI 57 >gi|255023123|ref|ZP_05295109.1| hypothetical protein LmonocyFSL_06060 [Listeria monocytogenes FSL J1-208] Length = 86 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Query: 9 YGIRVLMYCAIH-NDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVETVR 58 Y + L+ + ++ + + +A+ +S+ + K+L L + GI+E+ + Sbjct: 6 YSLNTLIELGLRISEKVVELPEFLTYQILADHANVSKSYTSKVLGHLRQEGILESRK 62 >gi|114707104|ref|ZP_01440002.1| transcriptional regulator protein (repressor of nodulation genes), ArsR family [Fulvimarina pelagi HTCC2506] gi|114537300|gb|EAU40426.1| transcriptional regulator protein (repressor of nodulation genes), ArsR family [Fulvimarina pelagi HTCC2506] Length = 106 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + ++ +AE +S+ L + L L G VET R Sbjct: 22 LRILCLLA---EGEMQVGALAERVGLSQSALSQHLAKLRAGGAVETRR 66 >gi|220920523|ref|YP_002495824.1| GntR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945129|gb|ACL55521.1| transcriptional regulator, GntR family [Methylobacterium nodulans ORS 2060] Length = 265 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 13/112 (11%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A P +IA +S + + + L G+VE + G + R + + Sbjct: 43 LARLPGQPINEKEIAARYGVSRTPVHEAMLKLADEGLVEIF--PQAGTYVARIPYR-DLP 99 Query: 77 DVV---KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA-----LNAFFD 120 +V+ +A EES A H L + L +A AF Sbjct: 100 EVIVIRRALEESSA--RLAAEHAKPADLAALDRIMVALDEAAADQDREAFRQ 149 >gi|755608|gb|AAA92879.1| biotin [acetyl-CoA carboxylase] ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 305 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R D L+ + + +I++A S ++K ++ L K G VE VR Sbjct: 1 MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55 Query: 59 GRRGGVRLCRPA-----DQITIL 76 + G RL + +I Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76 >gi|304312329|ref|YP_003811927.1| tRNA-processing ribonuclease BN [gamma proteobacterium HdN1] gi|301798062|emb|CBL46284.1| tRNA-processing ribonuclease BN [gamma proteobacterium HdN1] Length = 422 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R L+ A + +QI E + +I + L++A ++ G +L Sbjct: 317 ALRTLVLAARPFDRGETLLTQAQIEEQLGVPIPLSRRICEKLIRAKLLICNEGSD---QL 373 Query: 67 --CRPADQITILDVVKAT 82 R DQI++ D++ A Sbjct: 374 LPGRSIDQISLSDILTAI 391 >gi|227538430|ref|ZP_03968479.1| LacI family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241712|gb|EEI91727.1| LacI family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 368 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ A+ + P I +IA IS + + L G+V T+R Sbjct: 29 LIQIAMKKEKPATIKEIARKLKISPSTVSRALNDHPSIGLVTTMR 73 >gi|15614248|ref|NP_242551.1| transcriptional repressor of the biotin operon [Bacillus halodurans C-125] gi|10174302|dbj|BAB05404.1| transcriptional repressor of the biotin operon [Bacillus halodurans C-125] Length = 323 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L D +I++A S ++K ++ L K+G VE V+ + G R+ + DQ Sbjct: 6 LKMLLTAGDDFVSGEKISQAIGCSRTAVWKHIEELRKSGYEVEAVQRK--GYRIVKRPDQ 63 Query: 73 ITILDVVKATE 83 I D+ E Sbjct: 64 IKPHDIQVVLE 74 >gi|260061566|ref|YP_003194646.1| ArsR family transcription regulator [Robiginitalea biformata HTCC2501] gi|88785698|gb|EAR16867.1| transcription regulator, ArsR family protein (imported) [Robiginitalea biformata HTCC2501] Length = 84 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + +IA+ IS+ + L L +AG+V + R +G L Sbjct: 21 KERDLSAGEIADQFNISKPSISHHLDLLKRAGLVSSRR--QGQFML 64 >gi|290960127|ref|YP_003491309.1| IclR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260649653|emb|CBG72768.1| putative IclR-family transcriptional regulator [Streptomyces scabiei 87.22] Length = 252 Score = 38.0 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRR-GGVRLC 67 +RVL A H ++IA + L +L+ L + G VE T G G L Sbjct: 17 ALRVLETVARHAGG-VTDAEIARRTGVDSERLTALLRMLRREGYVEQTTEGAYVTGAALA 75 Query: 68 R 68 R Sbjct: 76 R 76 >gi|254420441|ref|ZP_05034165.1| HTH domain family [Brevundimonas sp. BAL3] gi|196186618|gb|EDX81594.1| HTH domain family [Brevundimonas sp. BAL3] Length = 110 Score = 38.0 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70 ++L Y A H D +IA IS+ + + L L AG+V + +G+ L Sbjct: 15 KILAYLA-HAD--LTAGEIAAKFEISKPAVSQHLSVLEVAGLVTSEKKGQYVHYSLA--P 69 Query: 71 DQIT 74 DQ+T Sbjct: 70 DQLT 73 >gi|83642928|ref|YP_431363.1| ArsR family transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83630971|gb|ABC26938.1| transcription regulator (ArsR family) [Hahella chejuensis KCTC 2396] Length = 124 Score = 38.0 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R+L Y + P +IA+ IS+ + K L L+ +G+V+ Sbjct: 17 RILAYL---SKSPLTAGEIADRFDISKPAISKHLSILLASGLVQ 57 >gi|152966816|ref|YP_001362600.1| hypothetical protein Krad_2870 [Kineococcus radiotolerans SRS30216] gi|151361333|gb|ABS04336.1| Helix-turn-helix type 11 domain protein [Kineococcus radiotolerans SRS30216] Length = 326 Score = 38.0 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +AE ++ + + + L G V ++G GG RL Sbjct: 30 ATLAERLDVTPRTVRRDVDRLRGLGYPVRALKGPGGGYRL 69 >gi|320532097|ref|ZP_08032978.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135702|gb|EFW27769.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon 171 str. F0337] Length = 370 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 R ++ C +D P++I+ IAE ++ L+ AGI++T Sbjct: 299 RTMLVCMAKDDGPSQIADIAERMDRPVNYVSVYRNRLLAAGIIKT 343 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075231|gb|ADJ64630.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 18/120 (15%) Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------- 59 + ++ D S+I + +S + + + L AG+VET G Sbjct: 27 ALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRHGIGTFVLEA 86 Query: 60 RRGGVRLCRPADQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 ++GG + I T+ D++ E + L + L++ A Sbjct: 87 KKGG-NINIDPATITTMRDLLALLELRISL------ETETAGLAAARRTEEQLQEIREAL 139 >gi|145294182|ref|YP_001137003.1| hypothetical protein cgR_0139 [Corynebacterium glutamicum R] gi|57157996|dbj|BAD83970.1| putative transcriptional regulator [Corynebacterium glutamicum] gi|140844102|dbj|BAF53101.1| hypothetical protein [Corynebacterium glutamicum R] Length = 107 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 14/94 (14%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R+ + A+ N S++A+ +S+ + L L G+V + GR L P Sbjct: 21 RMAILLALRNGAARP-SELAQQLGVSKQVMSNQLSCLRGCGLVTSTPEGRHVWYTLADP- 78 Query: 71 DQITILDVVKATEESFFVA-----ECFASHKIDC 99 + D A + +C + C Sbjct: 79 ---RLRD---ALGDLLIPVLTIDPDCCSPEGCTC 106 >gi|296394859|ref|YP_003659743.1| IclR family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182006|gb|ADG98912.1| transcriptional regulator, IclR family [Segniliparus rotundus DSM 44985] Length = 263 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 R L+ + P I+Q+AE + + +++ L G VE RG G +L Sbjct: 21 RALLVLEILAQSGPTGITQLAEEIGVHKSTASRLVAVLEGRGFVE--RGANGKYQLG 75 >gi|300780580|ref|ZP_07090435.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300533566|gb|EFK54626.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 177 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L+ A R++++A+A +S L +++ L K G+V Sbjct: 51 ALLNVAKAPKKSLRMTELADATMMSLSHLSRVVTRLEKKGLV 92 >gi|148642629|ref|YP_001273142.1| phosphate transport system regulator-like protein, PhoU [Methanobrevibacter smithii ATCC 35061] gi|148551646|gb|ABQ86774.1| phosphate transport system regulator-like protein, PhoU [Methanobrevibacter smithii ATCC 35061] Length = 293 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P+ +IAE I+ ++ ++LQPLVK G V+ Sbjct: 18 ENPSTQDEIAEKLGITRRYVTQLLQPLVKEGTVK 51 >gi|25027501|ref|NP_737555.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259507091|ref|ZP_05749991.1| ArsR family transcriptional regulator [Corynebacterium efficiens YS-314] gi|23492783|dbj|BAC17755.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259165369|gb|EEW49923.1| ArsR family transcriptional regulator [Corynebacterium efficiens YS-314] Length = 133 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLC 67 Y IR+L + + P + + + L + L L K G+V + R L Sbjct: 24 YRIRILEILSTESQVPVSA--MIQETGLESSHLSQHLAVLRKYGLVTSERNANAVSYSLT 81 Query: 68 RPADQITILDVVK 80 P + D+++ Sbjct: 82 HPQ----VADLLR 90 >gi|251795741|ref|YP_003010472.1| hypothetical protein Pjdr2_1723 [Paenibacillus sp. JDR-2] gi|247543367|gb|ACT00386.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2] Length = 319 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++ N+ ++A+ +S+ + + + L +GI V RG+ GG RL Sbjct: 7 LSIMILL--QNNEILTTRELAKRLEVSDRTILRDMDALSLSGIPVVADRGKTGGWRL 61 >gi|154151641|ref|YP_001405259.1| signal transduction protein [Candidatus Methanoregula boonei 6A8] gi|154000193|gb|ABS56616.1| putative signal transduction protein with CBS domains [Methanoregula boonei 6A8] Length = 292 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + L+ + + +IA+ + + +Q L G+V+ V G +GG Sbjct: 11 LITLITLYHQKSHSIKGEEIADMILRNPGTVRNQMQSLKAIGLVDGVPGPKGGY 64 >gi|328545556|ref|YP_004305665.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326415296|gb|ADZ72359.1| Predicted transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 340 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +++AE +S +++ + L+ G+ +E RG GG RL + Sbjct: 20 VPATRLAERFEVSLRTIYRDVDRLLALGVPIEAERGAEGGYRLAK 64 >gi|307327034|ref|ZP_07606224.1| transcriptional regulator, ArsR family [Streptomyces violaceusniger Tu 4113] gi|306887332|gb|EFN18328.1| transcriptional regulator, ArsR family [Streptomyces violaceusniger Tu 4113] Length = 360 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P+ +++E+ I+ + + + L KAG++ T R RG L Sbjct: 298 GPHTTGELSESYGITPPEVSRHIAVLKKAGLLTTRR--RGRYVL 339 >gi|288917663|ref|ZP_06412026.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] gi|288350878|gb|EFC85092.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] Length = 253 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A +S + + + L + G + +G GG RL Sbjct: 26 LAARLEVSPRTVRRDVDRLRELGYPIRATKGPDGGYRL 63 >gi|258648610|ref|ZP_05736079.1| YihY family protein [Prevotella tannerae ATCC 51259] gi|260851396|gb|EEX71265.1| YihY family protein [Prevotella tannerae ATCC 51259] Length = 413 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%) Query: 11 IRVLMYCA-IHNDYPNRISQIAEACCISELFLFK---ILQPLVKAGIVETVRGRRGGVRL 66 + ++Y A + P + +IAE ++ L + ++Q L ++ R Sbjct: 304 LLCVVYKAFERGEAPISVDRIAEDLKLNPSLLKEALELMQSLPFLLYLDQER-----YAP 358 Query: 67 CRPADQITILDVVKATEES 85 R Q+TI +V+KA + Sbjct: 359 ARDPRQLTIGEVIKALDRD 377 >gi|258650628|ref|YP_003199784.1| Helix-turn-helix type 11 domain-containing protein [Nakamurella multipartita DSM 44233] gi|258553853|gb|ACV76795.1| Helix-turn-helix type 11 domain protein [Nakamurella multipartita DSM 44233] Length = 335 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 R+L + + ++AE +S+ + K + L G V+ VRG G L Sbjct: 7 RLLSLLGLMQSRRRWAGPELAERLGVSDRTVRKDIDRLRSLGYPVDAVRGAGGYYELG 64 >gi|182439119|ref|YP_001826838.1| DeoR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779771|ref|ZP_08239036.1| DeoR family transcriptional regulator [Streptomyces cf. griseus XylebKG-1] gi|178467635|dbj|BAG22155.1| putative DeoR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660104|gb|EGE44950.1| DeoR family transcriptional regulator [Streptomyces cf. griseus XylebKG-1] Length = 327 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + +++A +SE + + Q L AG+ V RGR GG RL Sbjct: 9 MVLLLQARPAMTAAELAAELEVSERTVTRDAQALSDAGVPVYAERGRAGGYRL 61 >gi|326780203|ref|ZP_08239468.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1] gi|326660536|gb|EGE45382.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1] Length = 321 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L G V RG GG +L A+ Sbjct: 22 SGADLADRLGVTPRTVRRDVDKLRDLGYPVNASRGTGGGYQLGAGAE 68 >gi|256396309|ref|YP_003117873.1| GntR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362535|gb|ACU76032.1| transcriptional regulator, GntR family [Catenulispora acidiphila DSM 44928] Length = 253 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ A + +AE +S + LQ L ++G + +GR Sbjct: 27 LIDTAAPGTSLDSERDLAETLGVSRPTVRAALQDLARSGYLVRHQGRG 74 >gi|222445873|ref|ZP_03608388.1| hypothetical protein METSMIALI_01519 [Methanobrevibacter smithii DSM 2375] gi|261349582|ref|ZP_05974999.1| phosphate transport system regulator [Methanobrevibacter smithii DSM 2374] gi|222435438|gb|EEE42603.1| hypothetical protein METSMIALI_01519 [Methanobrevibacter smithii DSM 2375] gi|288861540|gb|EFC93838.1| phosphate transport system regulator [Methanobrevibacter smithii DSM 2374] Length = 293 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P+ +IAE I+ ++ ++LQPLVK G V+ Sbjct: 18 ENPSTQDEIAEKLGITRRYVTQLLQPLVKEGTVK 51 >gi|229815644|ref|ZP_04445971.1| hypothetical protein COLINT_02695 [Collinsella intestinalis DSM 13280] gi|229808874|gb|EEP44649.1| hypothetical protein COLINT_02695 [Collinsella intestinalis DSM 13280] Length = 238 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 D ++AE +S L + LV ++E+ +G G L P I I Sbjct: 12 GDRLMPERELAERLGVSRTALRAAITQLVSTHVLESRQG-SGTYVL--PPKPINIFQ 65 >gi|182439539|ref|YP_001827258.1| DeoR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468055|dbj|BAG22575.1| putative DeoR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 321 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L G V RG GG +L A+ Sbjct: 22 SGADLADRLGVTPRTVRRDVDKLRDLGYPVNASRGTGGGYQLGAGAE 68 >gi|158424859|ref|YP_001526151.1| hypothetical protein AZC_3235 [Azorhizobium caulinodans ORS 571] gi|158331748|dbj|BAF89233.1| unknown protein [Azorhizobium caulinodans ORS 571] Length = 317 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 D G+ L+ + + P ISQ+A +S + +LQ +V GR GG R Sbjct: 208 DVGLVALVSF-VASGGPMSISQLARQFSVSRAHIANVLQLAEAQNLVCGEPGR-GGYR 263 >gi|322368081|ref|ZP_08042650.1| hypothetical protein ZOD2009_01325 [Haladaptatus paucihalophilus DX253] gi|320552097|gb|EFW93742.1| hypothetical protein ZOD2009_01325 [Haladaptatus paucihalophilus DX253] Length = 140 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y + VL + N+ P R S I + +S L K L L +AG++ Sbjct: 46 YALPVL-HLFSMNEGPLRFSDIEDRLDVSPTTLSKRLSELTEAGLLT 91 >gi|317419272|emb|CBN81309.1| Transposable element Tcb1 transposase [Dicentrarchus labrax] Length = 341 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 I++ I + +++ K G V+ + GR G R D+ ++ +V+ + Sbjct: 26 KAISKDLGIPVSTVRNVIKKFAKHGTVKNLPGRGG----KRKIDERSLRRLVRMVD 77 >gi|297561074|ref|YP_003680048.1| iron (metal) dependent repressor, DtxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845522|gb|ADH67542.1| iron (metal) dependent repressor, DtxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 233 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY ++V+ + P IS +AE +S + +L+ L + G+VE R G V L Sbjct: 14 DY-VKVIYDLQERGNGPVTISGMAERLSVSNSSVSGMLRKLSELGLVEHRR--YGAVNLT 70 Query: 68 RP 69 P Sbjct: 71 EP 72 >gi|226308918|ref|YP_002768878.1| DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226188035|dbj|BAH36139.1| putative DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 324 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE IS + + + L + G + G GG RL Sbjct: 25 LAERLDISHRTVRRDIDRLREMGYSIAATMGPDGGYRL 62 >gi|254490799|ref|ZP_05103982.1| LexA repressor [Methylophaga thiooxidans DMS010] gi|224463971|gb|EEF80237.1| LexA repressor [Methylophaga thiooxydans DMS010] Length = 202 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 16 YCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 Y H P +S+IAE I S+ + +Q LV AG++E GR G+RL + I Sbjct: 16 YVDEHGRSPL-VSEIAEGLGIRSQGTTHRYIQALVDAGLLERHVGRTRGLRLTEQPEDI 73 >gi|221067912|ref|ZP_03544017.1| transcriptional regulator, Crp/Fnr family [Comamonas testosteroni KF-1] gi|220712935|gb|EED68303.1| transcriptional regulator, Crp/Fnr family [Comamonas testosteroni KF-1] Length = 270 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 H + QIA +S +ILQ L +AG ++ RG+ Sbjct: 208 HRELAVSQEQIARMLGLSRQTTNQILQELQQAGWLQLRRGK 248 >gi|83950681|ref|ZP_00959414.1| transcriptional regulator, GntR family protein [Roseovarius nubinhibens ISM] gi|83838580|gb|EAP77876.1| transcriptional regulator, GntR family protein [Roseovarius nubinhibens ISM] Length = 237 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 D ++++ ++ + + + L +AG+ + RG GV + + Sbjct: 24 RPGDKLPTEAELSARFGVNRHTVRRAIAALAEAGLTHSQRGS--GVFVTAKPTDYPLGRR 81 Query: 79 VK 80 V+ Sbjct: 82 VR 83 >gi|296118634|ref|ZP_06837212.1| transcriptional regulator, MarR family [Corynebacterium ammoniagenes DSM 20306] gi|295968533|gb|EFG81780.1| transcriptional regulator, MarR family [Corynebacterium ammoniagenes DSM 20306] Length = 167 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 2 HLTK---RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 LT+ + +G L + ++ R+S++AE S L +++ L K G V Sbjct: 44 QLTQNAGLSHFGYTALARLSEADNRSLRMSELAETANGSLSRLSQVIAKLEKKGWVT 100 >gi|218281381|ref|ZP_03487859.1| hypothetical protein EUBIFOR_00424 [Eubacterium biforme DSM 3989] gi|218217473|gb|EEC91011.1| hypothetical protein EUBIFOR_00424 [Eubacterium biforme DSM 3989] Length = 243 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +++E I+ + + L+ L + G+++T RG Sbjct: 26 GDRLVSEREMSEQYGINRMTVRNALKKLQEEGVIKTKRGSG 66 >gi|120406178|ref|YP_956007.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1] gi|119958996|gb|ABM16001.1| regulatory protein, IclR [Mycobacterium vanbaalenii PYR-1] Length = 316 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 +RVL + A H +S++A +++ I+ L AG + VR RL Sbjct: 18 VRVLDFLARHPQERFGVSELARRVDLTKPTCLGIVTSLRDAGYL--VRDPADKTYRLG-- 73 Query: 70 ADQITIL 76 IT+ Sbjct: 74 PSLITLG 80 >gi|150389135|ref|YP_001319184.1| regulatory protein GntR, HTH [Alkaliphilus metalliredigens QYMF] gi|149948997|gb|ABR47525.1| regulatory protein GntR, HTH [Alkaliphilus metalliredigens QYMF] Length = 124 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++A++ I+ + K + L K G + +VRG+ Sbjct: 37 SVRELAQSLTINPNTIQKAYRDLEKEGFIYSVRGKG 72 >gi|302551328|ref|ZP_07303670.1| IclR-family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302468946|gb|EFL32039.1| IclR-family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 260 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + +L A D P R+ ++A+ + ++ +LQ LV G V T Sbjct: 17 VELLELLAARGDRPARLQELADELGVPRSSMYALLQTLVSRGWVRT 62 >gi|229490407|ref|ZP_04384248.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229322697|gb|EEN88477.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 128 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I+++ +S+ + L+ L +AG+++ R Sbjct: 42 LRLLSLVASHEGGEACVCDISDSFDLSQPTISHHLKVLRQAGLLDCER 89 >gi|154251387|ref|YP_001412211.1| putative ribonuclease BN [Parvibaculum lavamentivorans DS-1] gi|154155337|gb|ABS62554.1| putative ribonuclease BN [Parvibaculum lavamentivorans DS-1] Length = 459 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 9/140 (6%) Query: 8 DYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 ++ L+ P +A + + +I L +AG++ G Sbjct: 317 RMAVQALLLVHDAFERGQTPWTEEALARRLHVPMEAMAEISGALCEAGLLTFAAGTPSKF 376 Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 RPAD+ + DV+ A + F+ D L + ++ K ++ Sbjct: 377 VPTRPADKTCVADVLAAVRKKR-----FSRSVTDDTLAHEPRVEALFEKMDEQQARLVDP 431 Query: 125 YSIECLVRNRSSIKKIFNAG 144 +I L+ + ++ +AG Sbjct: 432 VTIASLMAADEAAPEV-DAG 450 >gi|293605141|ref|ZP_06687532.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292816465|gb|EFF75555.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 68 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 10 GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R L +D P ++ + EA + + + +IL LV+AG++ Sbjct: 8 ALRALTLLEQVARSDAPVSLAALTEATGLPKPSVLRILTRLVEAGML 54 >gi|291531033|emb|CBK96618.1| Transcriptional regulators [Eubacterium siraeum 70/3] Length = 154 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 RVLMY A + + + + CIS+ + +++ L K+G + Sbjct: 39 RVLMYIANSPEKDIFAADLHKHLCISKPSVSALIKKLRKSGYI 81 >gi|238618631|ref|YP_002913456.1| transcriptional regulator, MarR family [Sulfolobus islandicus M.16.4] gi|238379700|gb|ACR40788.1| transcriptional regulator, MarR family [Sulfolobus islandicus M.16.4] Length = 688 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPADQI--- 73 + +D + S++A+ +S+ + +L+ L + G+VE + G+ L +I Sbjct: 522 LPDDKGLKSSEVADKLRVSKQYAINVLKNLERKGLVEADKEDGKTFAWYLTPLGRKIKDL 581 Query: 74 --TILDVVKA 81 + DV++ Sbjct: 582 VNNVGDVIEV 591 >gi|237739853|ref|ZP_04570334.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423461|gb|EEO38508.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 478 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K+++ L + G + +V+G+ Sbjct: 32 ENDKFFSVRQISIKYGLNPNTVLKVVKALEEEGYLYSVKGKG 73 >gi|47097012|ref|ZP_00234585.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] gi|255030867|ref|ZP_05302818.1| hypothetical protein LmonL_20286 [Listeria monocytogenes LO28] gi|47014594|gb|EAL05554.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854] Length = 51 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 14/26 (53%) Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133 + + NA DVL Q ++ L+++ Sbjct: 12 RELWTRMRNAVRDVLDQTTLADLLKH 37 >gi|325067697|ref|ZP_08126370.1| hypothetical protein AoriK_07744 [Actinomyces oris K20] Length = 317 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 R ++ C +D P++I+ IAE ++ L+ AGI++T Sbjct: 246 RTMLVCMAKDDGPSQIADIAERMDRPVNYVSVYRNRLLAAGIIKT 290 >gi|298247850|ref|ZP_06971655.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297550509|gb|EFH84375.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 324 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 RVL + P ++A + + + + L AGI VE GR GG RL Sbjct: 7 RVLTVLELLQSKPFITGPELATRLEVDVRTVRRYITTLQDAGIPVEANIGRHGGYRL 63 >gi|239584277|gb|ACR82891.1| DeoR family transcriptional regulator [Streptomyces sp. KCTC 9047] Length = 353 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE +++ + + + L + G V+ G GG RL Sbjct: 23 SGAELAERLGVTDRTVRRDVDRLRELGYPVDASPGTGGGYRLA 65 >gi|229818654|ref|YP_002880180.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] gi|229564567|gb|ACQ78418.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] Length = 325 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 7 TDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 D R+L A+ P S++A+ +S + ++ L + VE VRGR G Sbjct: 2 ADTAARMLDLLALLQMRPGWSGSELAQRLSVSTRTIRADIERLRRLDYPVEGVRGRAGHY 61 Query: 65 RLC 67 RL Sbjct: 62 RLG 64 >gi|169825966|ref|YP_001696124.1| YobV [Lysinibacillus sphaericus C3-41] gi|168990454|gb|ACA37994.1| YobV [Lysinibacillus sphaericus C3-41] Length = 308 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + + ++ I+ ++AE +S +++ ++ L AGI V + +G Sbjct: 1 MKLER-----LLTMIMILINR-KKVTAQELAELFNVSVRTIYRDIETLSCAGIPVISQQG 54 Query: 60 RRGGVRL 66 GG+ L Sbjct: 55 VHGGISL 61 >gi|163851335|ref|YP_001639378.1| regulatory protein ArsR [Methylobacterium extorquens PA1] gi|163662940|gb|ABY30307.1| regulatory protein ArsR [Methylobacterium extorquens PA1] Length = 120 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 10/90 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +R++ +A+A +S + L+ L AG+V + R GR P Sbjct: 20 LRLVRALVTAGPGGLASGVLADAVGVSAATVSHHLKELSHAGLVTSRREGRSIIYSAAYP 79 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDC 99 A + D+V+ F + +C H C Sbjct: 80 A----LSDLVQ-----FLMRDCCQGHPEVC 100 >gi|307323322|ref|ZP_07602532.1| GntR domain protein [Streptomyces violaceusniger Tu 4113] gi|306890811|gb|EFN21787.1| GntR domain protein [Streptomyces violaceusniger Tu 4113] Length = 253 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ D G+ + + A A + E+ + + L + G+VE GR Sbjct: 33 RISLAVDLGLLA------PGERLPNVQATAAALGVGEITVRRAFGTLEREGVVERRPGRT 86 Query: 62 GGVRLCRPADQITILDV 78 GG + + T+ V Sbjct: 87 GGTFIAERPRRRTVAQV 103 >gi|239940668|ref|ZP_04692605.1| DeoR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239987148|ref|ZP_04707812.1| DeoR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291444106|ref|ZP_06583496.1| DeoR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291347053|gb|EFE73957.1| DeoR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 327 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + +++A +SE + + Q L AG+ V RGR GG RL Sbjct: 9 MVLLLQARPAMTAAELAAELEVSERTVTRDAQALSDAGVPVYAERGRAGGYRL 61 >gi|291443652|ref|ZP_06583042.1| DeoR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291346599|gb|EFE73503.1| DeoR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 342 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L + G V RG GG +L A+ Sbjct: 43 SGADLADRLGVTPRTVRRDVDKLRELGYPVNAARGTGGGYQLGAGAE 89 >gi|264677779|ref|YP_003277685.1| Crp/Fnr family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208291|gb|ACY32389.1| transcriptional regulator, Crp/Fnr family [Comamonas testosteroni CNB-2] Length = 253 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 H + QIA +S +ILQ L +AG ++ RG+ Sbjct: 191 HRELAVSQEQIARMLGLSRQTTNQILQELQQAGWLQLRRGK 231 >gi|302535064|ref|ZP_07287406.1| MarR family transcriptional regulator [Streptomyces sp. C] gi|302443959|gb|EFL15775.1| MarR family transcriptional regulator [Streptomyces sp. C] Length = 155 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----L 66 + + + A+ + S++AE +++ +I+ L K G V GG R L Sbjct: 42 LHGMAFQALKGPG-STASELAERLGVTKQAAGQIVDDLEKRGYVRREPHPGGGRRKLVVL 100 Query: 67 CRPADQ--ITILDVVKATEESFF 87 A+Q T V+ E Sbjct: 101 TPAAEQHLATAGRVLHGLEAELA 123 >gi|239940221|ref|ZP_04692158.1| DeoR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986710|ref|ZP_04707374.1| DeoR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 321 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L + G V RG GG +L A+ Sbjct: 22 SGADLADRLGVTPRTVRRDVDKLRELGYPVNAARGTGGGYQLGAGAE 68 >gi|171059567|ref|YP_001791916.1| IclR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777012|gb|ACB35151.1| transcriptional regulator, IclR family [Leptothrix cholodnii SP-6] Length = 256 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +L A H D P + QI+E + +IL LV V+ R G RL Sbjct: 18 FHLLDVLATHQD-PVSLKQISEHTGLHPSTAHRILNDLVAGRFVD--RPEAGSYRLGMRL 74 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 75 LE--LGNLVKA 83 >gi|153004345|ref|YP_001378670.1| biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp. Fw109-5] gi|152027918|gb|ABS25686.1| biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp. Fw109-5] Length = 329 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 VL + A D I+ ++ ++K + L AG ++ + R G RL D Sbjct: 11 VLAFLAEAGDEFVSGEAISGKLGLTRAAVWKHVNALRAAGYRIDALPAR--GYRLAEVPD 68 Query: 72 QITILDV 78 ++T L++ Sbjct: 69 RLTALEL 75 >gi|288930886|ref|YP_003434946.1| hypothetical protein Ferp_0497 [Ferroglobus placidus DSM 10642] gi|288893134|gb|ADC64671.1| hypothetical protein Ferp_0497 [Ferroglobus placidus DSM 10642] Length = 478 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 13/70 (18%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPADQITILD 77 + +IA C +S K L LV+AG + + RG L + Sbjct: 60 GGKGVSLGEIARKCGLSRKNTLKHLNALVEAGYIVKEGSRRGAV--YTLTKEGR------ 111 Query: 78 VVKATEESFF 87 +A EE Sbjct: 112 --RAVEEVLE 119 >gi|163748232|ref|ZP_02155528.1| putative transcription regulator protein [Oceanibulbus indolifex HEL-45] gi|161378494|gb|EDQ02967.1| putative transcription regulator protein [Oceanibulbus indolifex HEL-45] Length = 238 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI----- 73 + + +QIA A +S + + L+ L + G+VE RG G RP++++ Sbjct: 32 VQGEKLPSENQIATAFGVSRPVVREALRKLQEDGLVEARRGV-GTFVRRRPSEKLIEYAT 90 Query: 74 --TILDVVKATEESFFV 88 ++ +++A E V Sbjct: 91 AGSVAGLMRAMEARITV 107 >gi|306830105|ref|ZP_07463289.1| HTH domain protein [Streptococcus mitis ATCC 6249] gi|304427631|gb|EFM30727.1| HTH domain protein [Streptococcus mitis ATCC 6249] Length = 320 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + ++ N +IAE IS +++ + L AGI + + RG +G Sbjct: 21 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGDFY 72 >gi|295098800|emb|CBK87889.1| Transcriptional regulators [Eubacterium cylindroides T2-87] Length = 250 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 21/33 (63%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++E +S++ + K + L K G+V+ V+G+ Sbjct: 37 ELSEQYNVSKITIRKAMSNLAKDGLVQKVQGKG 69 >gi|111220159|ref|YP_710953.1| DeoR family transcriptional regulator [Frankia alni ACN14a] gi|111147691|emb|CAJ59347.1| Putative DeoR family transcriptional regulator [Frankia alni ACN14a] Length = 391 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ + VLM Q+A+ +S + + L L +AG+ V RG Sbjct: 1 MRASRL----LSVLMLL--QTRGKLTARQLADELEVSVRTVHRDLDSLAQAGVPVLADRG 54 Query: 60 RRGGVRL 66 GG RL Sbjct: 55 VTGGYRL 61 >gi|83649342|ref|YP_437777.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83637385|gb|ABC33352.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 323 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ + +LM +A+ C +S +++ ++ L GI V + RG Sbjct: 1 MRASRL----LTILMTL--QARGQTTAPMLAKECGVSLRTVYRDIETLSALGIPVYSERG 54 Query: 60 RRGGVRL 66 GG RL Sbjct: 55 AEGGYRL 61 >gi|57640682|ref|YP_183160.1| bifunctional biotin-protein ligase/biotin operon repressor [Thermococcus kodakarensis KOD1] gi|57159006|dbj|BAD84936.1| bifunctional biotin-protein ligase/biotin operon repressor [Thermococcus kodakarensis KOD1] Length = 239 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 A D P ++AE IS + ++K ++ L + G +E G L D Sbjct: 14 LAAIEDGPVSGEKLAEGLGISRVAVWKHIRELKRLGYKIEAS---HAGYFLRERPD 66 >gi|239635944|ref|ZP_04676961.1| HTH domain protein [Staphylococcus warneri L37603] gi|239598409|gb|EEQ80889.1| HTH domain protein [Staphylococcus warneri L37603] Length = 232 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75 I +++A+ +S+ + + + L G+ + G +GG ++ +I++ Sbjct: 14 IQQSNKITATELAKRFNVSKRTILRDIDDLENQGVQIHASHGSQGGYKIQDAQSKISL 71 >gi|315160677|gb|EFU04694.1| primase 1 [Enterococcus faecalis TX0645] Length = 464 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|299531599|ref|ZP_07045004.1| transcriptional regulator, Crp/Fnr family protein [Comamonas testosteroni S44] gi|298720315|gb|EFI61267.1| transcriptional regulator, Crp/Fnr family protein [Comamonas testosteroni S44] Length = 253 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 H + QIA +S +ILQ L +AG ++ RG+ Sbjct: 191 HRELAVSQEQIARMLGLSRQTTNQILQELQQAGWLQLRRGK 231 >gi|238060495|ref|ZP_04605204.1| DeoR-family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882306|gb|EEP71134.1| DeoR-family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 321 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S+IAE ++ + + ++ L G V+ G GG RL P Sbjct: 24 SEIAERLQVTPRTVRRDIERLRDLGYPVQAAMGVHGGYRLVAGKAMPP 71 >gi|187729635|ref|YP_001798636.1| repE protein [Lactococcus garvieae] gi|313247834|ref|YP_004032996.1| replication protein [Enterococcus faecalis] gi|171854419|dbj|BAG16426.1| putative repE protein [Lactococcus garvieae] gi|312837001|dbj|BAJ34887.1| replication protein [Enterococcus faecalis] Length = 496 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|110800255|ref|YP_695934.1| GntR family transcriptional regulator [Clostridium perfringens ATCC 13124] gi|110674902|gb|ABG83889.1| transcriptional regulator, GntR family [Clostridium perfringens ATCC 13124] Length = 249 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Query: 19 IHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 I+ +YP ++A++ +S + L + L L G+V+ +RG+ Sbjct: 28 INGEYPLNSKLPSEPELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75 >gi|29377853|ref|NP_816981.1| repE protein [Enterococcus faecalis V583] gi|257090960|ref|ZP_05585321.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|29345305|gb|AAO83052.1| repE protein [Enterococcus faecalis V583] gi|256999772|gb|EEU86292.1| conserved hypothetical protein [Enterococcus faecalis CH188] Length = 496 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|182679855|ref|YP_001834001.1| helix-turn-helix type 11 domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635738|gb|ACB96512.1| Helix-turn-helix type 11 domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 324 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +A+ C +S +++ + L AGI V + RG GG RL Sbjct: 13 LQARGRVTAQALADECEVSLRTIYRDIDALSAAGIPVYSERGSEGGYRL 61 >gi|85703067|ref|ZP_01034171.1| regulatory protein, IclR [Roseovarius sp. 217] gi|85671995|gb|EAQ26852.1| regulatory protein, IclR [Roseovarius sp. 217] Length = 274 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRL 66 +M C + P S+IA + + +I+ L G++ G RG G RL Sbjct: 23 AVMECVGSSGRPLTTSEIAVLLDMPTPTVHRIVHQLDMDGLLVQEAGSRGYVPGPRL 79 >gi|84386574|ref|ZP_00989601.1| melibiose operon regulator [Vibrio splendidus 12B01] gi|84378679|gb|EAP95535.1| melibiose operon regulator [Vibrio splendidus 12B01] Length = 339 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +L Y A H++ P + IAE + + + Q Sbjct: 204 MLEYIATHHNQPLTVKDIAEHIGLHANYAMNVFQR 238 >gi|152966603|ref|YP_001362387.1| MarR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151361120|gb|ABS04123.1| transcriptional regulator, MarR family [Kineococcus radiotolerans SRS30216] Length = 160 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR---R 61 +Y + L + ++ + R+S +AE S L + + L K G + R Sbjct: 43 SYFEYAV--LSWLSMQPERTTRMSDLAELVNSSLSRLSHLARRLEKQGWLT--RRPDPTD 98 Query: 62 GGVRLC 67 G L Sbjct: 99 GRYTLA 104 >gi|327394679|dbj|BAK12101.1| HTH-type transcriptional regulator TtgV TtgV [Pantoea ananatis AJ13355] Length = 323 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++L H + +IA+ + + +I+ L A +V + GG+RL Sbjct: 84 AAKILNALGEHPGG-MSLGEIAQVVDLPRSTVQRIVAALDSAELVRSS--GAGGLRLG 138 >gi|239931715|ref|ZP_04688668.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291440083|ref|ZP_06579473.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291342978|gb|EFE69934.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 345 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 9 MVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRIGGYRL 61 >gi|153007413|ref|YP_001368628.1| ROK family protein [Ochrobactrum anthropi ATCC 49188] gi|151559301|gb|ABS12799.1| ROK family protein [Ochrobactrum anthropi ATCC 49188] Length = 439 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 20/97 (20%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG------ 62 R+++ + R ++IA +S + I++ L K G++ E VRGR G Sbjct: 59 RLVLALVRRHGALAR-AEIARLTGLSAQTVSVIIRALEKDGLITQGERVRGRVGQPSMPM 117 Query: 63 ----------GVRLCRPADQITILDVVKATEESFFVA 89 G+++ R + +I ++D + A E + Sbjct: 118 RLAADGVFSFGLKIGRRSAEIILMDFLGAIRERRHIT 154 >gi|99078675|ref|YP_611933.1| GntR family transcriptional regulator [Ruegeria sp. TM1040] gi|99035813|gb|ABF62671.1| transcriptional regulator, GntR family [Ruegeria sp. TM1040] Length = 240 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +Q+AE ++ + + L + + G+V RG GV + + ++ Sbjct: 37 AQLAERFGVNRHTVRRALADMSEQGLVHARRGA--GVFVAAKPTDYPVGKRIR 87 >gi|289764641|ref|ZP_06524019.1| transcriptional regulator [Fusobacterium sp. D11] gi|289716196|gb|EFD80208.1| transcriptional regulator [Fusobacterium sp. D11] Length = 366 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K++Q L + G + +V+G+ Sbjct: 32 ENDKFYSVRQISIKYEVNLNTVLKVIQMLEEEGYLYSVKGKG 73 >gi|237745302|ref|ZP_04575783.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|260495495|ref|ZP_05815621.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|229432531|gb|EEO42743.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|260197032|gb|EEW94553.1| transcriptional regulator [Fusobacterium sp. 3_1_33] Length = 475 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K++Q L + G + +V+G+ Sbjct: 32 ENDKFYSVRQISIKYEVNLNTVLKVIQMLEEEGYLYSVKGKG 73 >gi|221197954|ref|ZP_03571000.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] gi|221204488|ref|ZP_03577505.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221212911|ref|ZP_03585887.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] gi|221167124|gb|EED99594.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] gi|221175345|gb|EEE07775.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221181886|gb|EEE14287.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] Length = 247 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L P ++++A + + + LV G + VR +RGG R I Sbjct: 12 LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + AT+ + H L + T+VL K A L +V + Sbjct: 71 AAA--IDATDPVVDIV-----HPYLVALRDASRETAVLGKIQRASIAYL------DVVES 117 Query: 134 RSSIK 138 +I+ Sbjct: 118 EQAIR 122 >gi|254473908|ref|ZP_05087302.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062] gi|211957018|gb|EEA92224.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062] Length = 249 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + +A+ IS+ LF+ L+ L + G+ +E +GR GG+RL Sbjct: 24 LKSGECPTTHDLAKELGISQRTLFRDLELLRERGLPIEADKGRGGGIRL 72 >gi|16762365|ref|NP_457982.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143853|ref|NP_807195.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052740|ref|ZP_03345618.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|289828400|ref|ZP_06546282.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25513412|pir||AI0941 probable GntR-family regulatory protein STY3802 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504669|emb|CAD09555.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139489|gb|AAO71055.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 240 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|328883103|emb|CCA56342.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae ATCC 10712] Length = 319 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + + L G VE G GG RL P Sbjct: 24 SELAERLSVSPRTIRRDIDRLRDLGYPVEATLGAVGGYRLVAGTAMPP 71 >gi|262066340|ref|ZP_06025952.1| transcriptional regulator, GntR family [Fusobacterium periodonticum ATCC 33693] gi|291379904|gb|EFE87422.1| transcriptional regulator, GntR family [Fusobacterium periodonticum ATCC 33693] Length = 478 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K+++ L + G + +++G+ Sbjct: 32 ENDKFFSVRQISIKYGLNPNTVLKVIKALEEEGYLYSIKGKG 73 >gi|182440644|ref|YP_001828363.1| DeoR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469160|dbj|BAG23680.1| putative DeoR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 342 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S + + + L + G + +G GG RL Sbjct: 26 LAERLEVSPRTVRRDVDRLRELGYPIVAFKGPDGGYRL 63 >gi|291557502|emb|CBL34619.1| Transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 154 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 RVLMY A + + + CIS+ + +++ L K+G + Sbjct: 39 RVLMYIANSPGKDIFAADLHKHLCISKPSVSALIKKLRKSGYI 81 >gi|284047599|ref|YP_003397938.1| transcriptional regulator, IclR family [Acidaminococcus fermentans DSM 20731] gi|283951820|gb|ADB46623.1| transcriptional regulator, IclR family [Acidaminococcus fermentans DSM 20731] Length = 250 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 IR+L A +++I++A + + +++IL+ L +AG +E + G L Sbjct: 14 AIRILELYAAQRRESLSLTEISKALGLHKTTVYRILRTLQQAGWME-QSAKTGKYYLG 70 >gi|257877281|ref|ZP_05656934.1| regulatory protein [Enterococcus casseliflavus EC20] gi|257811447|gb|EEV40267.1| regulatory protein [Enterococcus casseliflavus EC20] Length = 302 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +L Y + IS+IA+A IS + +Q + AG++++ RG Sbjct: 22 LSMLRYI---GNEKKSISEIAQALQISNAITTRHVQQMEDAGLLDSERGTG 69 >gi|205359959|ref|ZP_02833581.2| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341797|gb|EDZ28561.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088480|emb|CBY98239.1| Histidine utilization repressor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 240 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA A +S + + + L+ AGI+ + RG Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|15236282|ref|NP_195242.1| O-methyltransferase family 2 protein [Arabidopsis thaliana] gi|4455342|emb|CAB36723.1| O-methyltransferase-like protein [Arabidopsis thaliana] gi|7270467|emb|CAB80233.1| O-methyltransferase-like protein [Arabidopsis thaliana] gi|20466674|gb|AAM20654.1| O-methyltransferase-like protein [Arabidopsis thaliana] gi|23198188|gb|AAN15621.1| O-methyltransferase-like protein [Arabidopsis thaliana] gi|332661074|gb|AEE86474.1| O-methyltransferase family 2 protein [Arabidopsis thaliana] Length = 382 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64 + P +++++ A S L +I++ LV GI + + + G G Sbjct: 63 SSQPVTLAELSSAVSASPSHLRRIMRFLVHQGIFKEIPTKDGLATGY 109 >gi|323463689|gb|ADX75842.1| transcriptional regulator, DeoR family [Staphylococcus pseudintermedius ED99] Length = 233 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Query: 17 CAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 A+ D P ++A+A +S+ + + +Q L G+ + G GG +L Sbjct: 11 LALIQQDKPMTALELAQALNVSKRTILRDMQELEGKGVQIVAHAGMYGGYQL 62 >gi|312136054|ref|YP_004003392.1| GntR family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311776105|gb|ADQ05592.1| transcriptional regulator, GntR family [Caldicellulosiruptor owensensis OL] Length = 121 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++A+ I+ ++ Q L + G+ +T RG Sbjct: 28 RPGEKLPSVREMAQKFNINPNTAQRVFQELEREGLSKTERGIG 70 >gi|301631285|ref|XP_002944730.1| PREDICTED: acetate operon repressor-like [Xenopus (Silurana) tropicalis] Length = 247 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 IR L A H R++++A+A ++ ++LQ LV+ G++ Sbjct: 41 AIRALKLMAQHAPDGLRLTELAQALGLTRPTAHRLLQALVQEGML 85 >gi|284042042|ref|YP_003392382.1| IclR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946263|gb|ADB49007.1| transcriptional regulator, IclR family [Conexibacter woesei DSM 14684] Length = 254 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +LM A +D IAE I + +L LV AG++ VRG G L Sbjct: 24 AVAILMAVA-QSDNGLTTRAIAERVAIGRQAAYHLLHTLVGAGVL--VRGEGGRYMLG 78 >gi|238912213|ref|ZP_04656050.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 240 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA A +S + + + L+ AGI+ + RG Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|229492671|ref|ZP_04386472.1| transcriptional regulator, MarR family [Rhodococcus erythropolis SK121] gi|229320330|gb|EEN86150.1| transcriptional regulator, MarR family [Rhodococcus erythropolis SK121] Length = 169 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62 VL + D+ ++S +A+ S L ++ + KAG V E +RG RG Sbjct: 56 VLAALSDAPDHKLQLSVLAQRANASLSRLSHVITKMEKAGWVKREVIRGSRG 107 >gi|256825602|ref|YP_003149562.1| transcriptional regulator [Kytococcus sedentarius DSM 20547] gi|256688995|gb|ACV06797.1| predicted transcriptional regulator [Kytococcus sedentarius DSM 20547] Length = 238 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R L+ ++ ++A I+E + + + L G + + G G RL Sbjct: 7 RALVLLSLLQTRRAWTALELARHLDIAERTVRRDISRLRSLGYDIRSAPGPGGTYRL 63 >gi|195874212|ref|ZP_02701248.2| putative regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630134|gb|EDX48774.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 240 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA A +S + + + L+ AGI+ + RG Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|149187376|ref|ZP_01865674.1| melibiose operon regulatory protein [Vibrio shilonii AK1] gi|148838912|gb|EDL55851.1| melibiose operon regulatory protein [Vibrio shilonii AK1] Length = 334 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +L Y A H++ P I IAE + + + Q Sbjct: 204 MLEYIATHHNQPLTIKDIAEHIGLHTNYAMNVFQR 238 >gi|220928649|ref|YP_002505558.1| ArsR family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998977|gb|ACL75578.1| transcriptional regulator, ArsR family [Clostridium cellulolyticum H10] Length = 300 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ R I+++ A ++ I QIAE +S + ++ L AGIV + R Sbjct: 16 LSSRVR--IKIINILAQNS---LNIKQIAEELGLSSAIVTMHVKKLEAAGIVHSER 66 >gi|297199166|ref|ZP_06916563.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297147311|gb|EDY59148.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 313 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 2 LQSRPSMTAAELARELEVSERTVSRDAQALSEAGVPVYADRGRAGGYRL 50 >gi|227548581|ref|ZP_03978630.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079342|gb|EEI17305.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 113 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 23/44 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +++L + A P + ++A+ +S+ + L+ L AG++ Sbjct: 42 LQILSHLAGEGCGPTTVGELADILDLSQPTVSHHLKKLTDAGLL 85 >gi|62182529|ref|YP_218946.1| GntR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197251496|ref|YP_002148998.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243797|ref|YP_002217994.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388647|ref|ZP_03215259.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354355|ref|YP_002228156.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205360636|ref|ZP_02685002.2| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|207859256|ref|YP_002245907.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|62130162|gb|AAX67865.1| putative regulatory protein, gntR family [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197215199|gb|ACH52596.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938313|gb|ACH75646.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605745|gb|EDZ04290.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274136|emb|CAR39146.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205348225|gb|EDZ34856.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711059|emb|CAR35431.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|322626470|gb|EFY23276.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322666814|gb|EFY62990.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322684027|gb|EFY80036.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323197656|gb|EFZ82789.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200770|gb|EFZ85841.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323243933|gb|EGA27944.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 240 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA A +S + + + L+ AGI+ + RG Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|297527131|ref|YP_003669155.1| transcriptional regulator, MarR family [Staphylothermus hellenicus DSM 12710] gi|297256047|gb|ADI32256.1| transcriptional regulator, MarR family [Staphylothermus hellenicus DSM 12710] Length = 114 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 1 MHL----TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L + +T + +L + +N I ++++ + + K ++ L +AG+V + Sbjct: 35 MKLGDILSSKTR--LLILYSLSRNNG--LSIKELSKITGLPISVISKHVKKLEEAGLVIS 90 Query: 57 --VRGRRG 62 G RG Sbjct: 91 GLKNGNRG 98 >gi|284042062|ref|YP_003392402.1| ArsR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946283|gb|ADB49027.1| transcriptional regulator, ArsR family [Conexibacter woesei DSM 14684] Length = 105 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +R++ + ++ + + + +S+ L K + LV AG V++ +G R G R Sbjct: 14 LRLMTMLSAVSEAEF--ATLRDRLDVSDSVLSKHIATLVGAGYVKSRKGVRVGRR 66 >gi|282862253|ref|ZP_06271316.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] gi|282563278|gb|EFB68817.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] Length = 322 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 9 MVLLLQSRPAMTAAELAGELEVSERTVTRDAQALSEAGVPVYADRGRTGGYRL 61 >gi|169828661|ref|YP_001698819.1| hypothetical protein Bsph_3178 [Lysinibacillus sphaericus C3-41] gi|168993149|gb|ACA40689.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 314 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 + ++ I ++AE C +S + + L L + G+ + + G GG R+ R Sbjct: 10 LMMKVNERKKFTIQEMAEECGVSRRTMIRDLMELSELGVPLYSEAGPNGGYRVLRE 65 >gi|319893265|ref|YP_004150140.1| transcriptional regulator, DeoR family [Staphylococcus pseudintermedius HKU10-03] gi|317162961|gb|ADV06504.1| transcriptional regulator, DeoR family [Staphylococcus pseudintermedius HKU10-03] Length = 233 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Query: 17 CAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 A+ D P ++A+A +S+ + + +Q L G+ + G GG +L Sbjct: 11 LALIQQDKPMTALELAQALNVSKRTILRDMQELEGKGVQIVAHAGMYGGYQL 62 >gi|225574109|ref|ZP_03782720.1| hypothetical protein RUMHYD_02174 [Blautia hydrogenotrophica DSM 10507] gi|225038660|gb|EEG48906.1| hypothetical protein RUMHYD_02174 [Blautia hydrogenotrophica DSM 10507] Length = 306 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 ++AE +S + + ++ L KAGI V TV+G +GG+R Sbjct: 15 QKEKCTAPELAEKFEVSRRTINRDIEALCKAGIPVCTVQGAKGGIR 60 >gi|28199256|ref|NP_779570.1| heat-inducible transcription repressor [Xylella fastidiosa Temecula1] gi|182681982|ref|YP_001830142.1| heat-inducible transcription repressor [Xylella fastidiosa M23] gi|32129616|sp|Q87BS6|HRCA_XYLFT RecName: Full=Heat-inducible transcription repressor hrcA gi|238691053|sp|B2I6F8|HRCA_XYLF2 RecName: Full=Heat-inducible transcription repressor hrcA gi|28057362|gb|AAO29219.1| heat-inducible transcriptional repressor [Xylella fastidiosa Temecula1] gi|182632092|gb|ACB92868.1| heat-inducible transcription repressor HrcA [Xylella fastidiosa M23] gi|307578247|gb|ADN62216.1| heat-inducible transcription repressor [Xylella fastidiosa subsp. fastidiosa GB514] Length = 349 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56 L R+ +R L+ C I N P +A+ IS + IL L + G++ + Sbjct: 9 LDSRSRQLLRTLISCYIQNGEPIGSKTLAQQAGLDISPATIRNILADLEELGLLNS 64 >gi|325289325|ref|YP_004265506.1| helix-turn-helix, type 11 domain-containing protein [Syntrophobotulus glycolicus DSM 8271] gi|324964726|gb|ADY55505.1| helix-turn-helix, type 11 domain-containing protein [Syntrophobotulus glycolicus DSM 8271] Length = 304 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + + I +L+ ++AE +SE +++ ++ L AGI + +G Sbjct: 1 MQINRLFE-TIYILLD-----KKTTTAKKLAERFEVSERTIYRDIETLSSAGIPIYASQG 54 Query: 60 RRGGVRL 66 + GG+ L Sbjct: 55 KGGGISL 61 >gi|306831258|ref|ZP_07464418.1| GntR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978162|ref|YP_004287878.1| GntR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426494|gb|EFM29606.1| GntR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178090|emb|CBZ48134.1| GntR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 122 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + ++AE ++ + + L + G+V + R Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68 >gi|288905188|ref|YP_003430410.1| transcriptional regulator, GntR family [Streptococcus gallolyticus UCN34] gi|288731914|emb|CBI13479.1| Putative transcriptional regulator, GntR family [Streptococcus gallolyticus UCN34] Length = 122 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + ++AE ++ + + L + G+V + R Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68 >gi|302546043|ref|ZP_07298385.1| ArsR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463661|gb|EFL26754.1| ArsR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 162 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R + A+ S +A +S + L L++AG+V R GR RL PA Sbjct: 26 RARILLALAEGRALPASVLATEAGVSASTVSGHLAKLLEAGVVRVERQGRHRYYRLTGPA 85 Query: 71 DQITILDVVKAT 82 + + ++A Sbjct: 86 ----VGEAIEAL 93 >gi|256377566|ref|YP_003101226.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM 43827] gi|255921869|gb|ACU37380.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM 43827] Length = 314 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +S + + + L + G + V+G GG RL Sbjct: 26 LAERLDVSARTVRRDVDRLRELGYPIAAVKGPDGGYRL 63 >gi|171779316|ref|ZP_02920280.1| hypothetical protein STRINF_01161 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281933|gb|EDT47364.1| hypothetical protein STRINF_01161 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 122 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + ++AE ++ + + L + G+V + R Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68 >gi|171185897|ref|YP_001794816.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus V24Sta] gi|170935109|gb|ACB40370.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus V24Sta] Length = 239 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 8/80 (10%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-RRGGVRLCRPADQI 73 +Y + +I++A I +++ L L KAG V RG R + P ++ Sbjct: 20 IYITLVERGALTAREISDALGIPYTKVYQHLNRLEKAGAVNQERGSRPAKFK-AVPPSEV 78 Query: 74 ------TILDVVKATEESFF 87 T DV+K + +F Sbjct: 79 YRRLVNTASDVLKTLKPTFD 98 >gi|152997221|ref|YP_001342056.1| regulatory protein GntR HTH [Marinomonas sp. MWYL1] gi|150838145|gb|ABR72121.1| regulatory protein GntR HTH [Marinomonas sp. MWYL1] Length = 248 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 D + E +S+ + + ++ L G+++T G GG L Sbjct: 33 GDRLPSEKDLIEQYEVSKGTVREAMKALEVEGLIKTKPGPGGGAWLTE 80 >gi|14590882|ref|NP_142954.1| hypothetical protein PH1045 [Pyrococcus horikoshii OT3] gi|3257460|dbj|BAA30143.1| 193aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 193 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 +++Y + D S+IAE +S + + L + GI++ + G+ L R AD Sbjct: 46 IMIYKMLREDGRISDSRIAERLGVSVTTVRRHRLKLQREGILQVI-----GLLLLRAAD 99 >gi|320546637|ref|ZP_08040949.1| GntR family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320448692|gb|EFW89423.1| GntR family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 122 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + ++AE ++ + + L + G+V + R Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68 >gi|297798406|ref|XP_002867087.1| O-methyltransferase family 2 protein [Arabidopsis lyrata subsp. lyrata] gi|297312923|gb|EFH43346.1| O-methyltransferase family 2 protein [Arabidopsis lyrata subsp. lyrata] Length = 368 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64 + P +++++ A S L +I++ LV GI + + + G G Sbjct: 49 SSQPVTLAELSSAVSASPSHLRRIMRFLVHQGIFKEIPTKDGLATGY 95 >gi|229141840|ref|ZP_04270367.1| Transcriptional regulator, ArsR [Bacillus cereus BDRD-ST26] gi|228641596|gb|EEK97900.1| Transcriptional regulator, ArsR [Bacillus cereus BDRD-ST26] Length = 306 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L + +A+ C +SE + + LQ L KA +V + + G L + Sbjct: 238 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKANLVTSK--KDGKYVLYKSQ 289 Query: 71 DQI 73 I Sbjct: 290 KNI 292 >gi|206976646|ref|ZP_03237551.1| transcriptional regulator, ArsR family [Bacillus cereus H3081.97] gi|217962588|ref|YP_002341160.1| transcriptional regulator, ArsR family [Bacillus cereus AH187] gi|222098557|ref|YP_002532615.1| transcriptional regulator, arsr family [Bacillus cereus Q1] gi|206745132|gb|EDZ56534.1| transcriptional regulator, ArsR family [Bacillus cereus H3081.97] gi|217063050|gb|ACJ77300.1| transcriptional regulator, ArsR family [Bacillus cereus AH187] gi|221242616|gb|ACM15326.1| transcriptional regulator, ArsR family [Bacillus cereus Q1] Length = 368 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L + +A+ C +SE + + LQ L KA +V + + G L + Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKANLVTSK--KDGKYVLYKSQ 351 Query: 71 DQI 73 I Sbjct: 352 KNI 354 >gi|161524745|ref|YP_001579757.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350501|ref|YP_001946129.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342174|gb|ABX15260.1| transcriptional regulator, IclR family [Burkholderia multivorans ATCC 17616] gi|189334523|dbj|BAG43593.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 247 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L P ++++A + + + LV G + VR +RGG R I Sbjct: 12 LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + AT+ + H L + T+VL K A L +V + Sbjct: 71 AAA--IDATDPVVDIV-----HPYLVALRDASRETAVLGKIQRASIAYL------DVVES 117 Query: 134 RSSIK 138 +I+ Sbjct: 118 EQAIR 122 >gi|52141727|ref|YP_085103.1| ArsR family transcriptional regulator [Bacillus cereus E33L] gi|51975196|gb|AAU16746.1| transcriptional regulator, ArsR family [Bacillus cereus E33L] Length = 368 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L + +A+ C +SE + + LQ L KA +V + + G L + Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKANLVTSK--KDGKYVLYKSQ 351 Query: 71 DQI 73 I Sbjct: 352 KNI 354 >gi|259415464|ref|ZP_05739385.1| phosphonate metabolism transcriptional regulator PhnF [Silicibacter sp. TrichCH4B] gi|259348694|gb|EEW60456.1| phosphonate metabolism transcriptional regulator PhnF [Silicibacter sp. TrichCH4B] Length = 240 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +Q+AE ++ + + L + + G+V RG GV + + ++ Sbjct: 37 AQLAERFGVNRHTVRRALADMAEQGLVHARRGA--GVFVAAKPTDYPVGKRIR 87 >gi|289810265|ref|ZP_06540894.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 158 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 40 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 73 >gi|213426112|ref|ZP_03358862.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582707|ref|ZP_03364533.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213610026|ref|ZP_03369852.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 243 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74 >gi|209559995|ref|YP_002286467.1| hypothetical protein Spy49_1505c [Streptococcus pyogenes NZ131] gi|209541196|gb|ACI61772.1| hypothetical protein Spy49_1505c [Streptococcus pyogenes NZ131] Length = 115 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69 R+ Y I ++ +I I L I+ +V G ++ + R + GG L Sbjct: 11 RIFCYLPIGSNMMVNSKEICRTFDIKDPKTLRDIIHGMVMKGYLIGSSRRKGGGYYLIDD 70 Query: 70 ----ADQITILD 77 A+ I+ L+ Sbjct: 71 DDERAEAISSLE 82 >gi|168244177|ref|ZP_02669109.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449742|ref|YP_002048071.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|204930200|ref|ZP_03221177.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194408046|gb|ACF68265.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|204320604|gb|EDZ05806.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336838|gb|EDZ23602.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 240 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|157283838|ref|YP_001468106.1| BadM/Rrf2 family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362980|gb|ABS05982.1| transcriptional regulator, BadM/Rrf2 family [Kineococcus radiotolerans SRS30216] Length = 269 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFK-ILQPLVKAGIVETV 57 +R+L+ + + P ++A+A +S L + +L LV G +E V Sbjct: 72 VRILLALQVRSGQPLSTPELADAAMVSAAHLRRGVLPRLVDGGHLEAV 119 >gi|15236280|ref|NP_195241.1| O-methyltransferase family 2 protein [Arabidopsis thaliana] gi|4455341|emb|CAB36722.1| O-methyltransferase-like protein [Arabidopsis thaliana] gi|7270466|emb|CAB80232.1| O-methyltransferase-like protein [Arabidopsis thaliana] gi|332661073|gb|AEE86473.1| O-methyltransferase family 2 protein [Arabidopsis thaliana] Length = 325 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64 + P +S+++ A S L +I++ LV G+ + V + G G Sbjct: 49 SSQPVTLSELSSAVSASPSHLRRIMRFLVHQGLFKEVPTKDGLATGY 95 >gi|296333018|ref|ZP_06875475.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674878|ref|YP_003866550.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis subsp. spizizenii str. W23] gi|317374855|sp|E0U174|BIRA_BACPZ RecName: Full=Bifunctional protein BirA; Includes: RecName: Full=Biotin operon repressor; Includes: RecName: Full=Biotin--[acetyl-CoA-carboxylase] synthetase; AltName: Full=Biotin--protein ligase gi|773349|gb|AAB60184.1| BirA protein [Bacillus subtilis] gi|296149869|gb|EFG90761.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413122|gb|ADM38241.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Bacillus subtilis subsp. spizizenii str. W23] Length = 325 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R D L+ + +I++A S ++K ++ L K G VE VR Sbjct: 1 MRSTLRKD-----LIELFSQAGSEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55 Query: 59 GRRGGVRLCRPA-----DQITIL 76 + G RL + +I Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76 >gi|46198439|ref|YP_004106.1| IclR family transcriptional regulator [Thermus thermophilus HB27] gi|46196061|gb|AAS80479.1| transcriptional regulator, IclR family [Thermus thermophilus HB27] Length = 274 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 G+RVL A + P + +AE +++ L+++L+ L +AG VE Sbjct: 40 GLRVLEALAQAGESP--LGPLAERVGLAKSTLYRLLRALAQAGFVE 83 >gi|71898352|ref|ZP_00680525.1| Negative regulator of class I heat shock protein [Xylella fastidiosa Ann-1] gi|71731875|gb|EAO33933.1| Negative regulator of class I heat shock protein [Xylella fastidiosa Ann-1] Length = 349 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56 L R+ +R L+ C I N P +A+ IS + IL L + G++ + Sbjct: 9 LDSRSRQLLRTLISCYIQNGEPIGSKTLAQQAGLDISPATIRNILADLEELGLLNS 64 >gi|288559255|sp|Q0VPA7|Y1543_ALCBS RecName: Full=UPF0761 membrane protein ABO_1543 Length = 429 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 28/124 (22%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQP------------LVKAGIVETVRGRRGGVRL 66 + R +I +++Q LV A ++ R GG L Sbjct: 303 QQSGKVLRSKEI-----------RQVMQESGISQWDEFRNLLVNANLIR--RTDEGGYIL 349 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 R I++ +V P + L S + +A L S Sbjct: 350 SRDLRNISLGQLVAMLPWPAHTQLRVRQQPESLPWEQA--LKSRMDEAREGMMAPLD-IS 406 Query: 127 IECL 130 ++ L Sbjct: 407 LDAL 410 >gi|257874692|ref|ZP_05654345.1| replication protein E [Enterococcus casseliflavus EC10] gi|257808856|gb|EEV37678.1| replication protein E [Enterococcus casseliflavus EC10] Length = 510 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG----IVETVRGRRGGVRLC 67 + ++ E+ I + L K+L+ L + +V GR GG+ L Sbjct: 406 STKKELTESLKIPKRSLDKVLKQLREENKIHFLVRA--GRNGGIMLA 450 >gi|257868364|ref|ZP_05648017.1| plasmid replication protein [Enterococcus casseliflavus EC30] gi|257802478|gb|EEV31350.1| plasmid replication protein [Enterococcus casseliflavus EC30] Length = 499 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG----IVETVRGRRGGVRLC 67 + ++ E+ I + L K+L+ L + +V GR GG+ L Sbjct: 395 STKKELTESLKIPKRSLDKVLKQLREENKIHFLVRA--GRNGGIMLA 439 >gi|237750146|ref|ZP_04580626.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374333|gb|EEO24724.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 190 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 12 RVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60 +VL Y + + D + ++Q IA A I+ L + L+ L GI+ T +G+ Sbjct: 136 KVLSYLSHNKDSLHTLTQRHIANALNIAPESLSRTLKALKTQGILTTHKGK 186 >gi|15674098|ref|NP_268273.1| zinc transport transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281492776|ref|YP_003354756.1| MarR family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12725171|gb|AAK06214.1|AE006439_11 zinc transport transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281376428|gb|ADA65914.1| Transcriptional regulator, MarR family [Lactococcus lactis subsp. lactis KF147] Length = 145 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM A + + ++IAE IS + K L+ L + ++++ R Sbjct: 41 HILMLLA---EQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSSR 84 >gi|16767334|ref|NP_462949.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194444714|ref|YP_002043330.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197261755|ref|ZP_03161829.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205357138|ref|ZP_02345193.2| putative regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357711|ref|ZP_02572740.2| putative regulatory protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16422634|gb|AAL22908.1| putative gntR family regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194403377|gb|ACF63599.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197240010|gb|EDY22630.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205323715|gb|EDZ11554.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330029|gb|EDZ16793.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249185|emb|CBG27046.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996364|gb|ACY91249.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160576|emb|CBW20106.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321225361|gb|EFX50419.1| Transcriptional regulator, GntR family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132413|gb|ADX19843.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990897|gb|AEF09880.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 240 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|55980476|ref|YP_143773.1| transcriptional regulator [Thermus thermophilus HB8] gi|55771889|dbj|BAD70330.1| transcriptional regulator [Thermus thermophilus HB8] Length = 274 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 G+RVL A + P + +AE +++ L+++L+ L +AG VE Sbjct: 40 GLRVLEALAQAGESP--LGPLAERVGLAKSTLYRLLRALAQAGFVE 83 >gi|224538774|ref|ZP_03679313.1| hypothetical protein BACCELL_03669 [Bacteroides cellulosilyticus DSM 14838] gi|224519622|gb|EEF88727.1| hypothetical protein BACCELL_03669 [Bacteroides cellulosilyticus DSM 14838] Length = 124 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 9/89 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVR 58 LT+ T I VL + +P R +Q+ I +L IL L G+V + Sbjct: 2 LTELTQTAIAVLCDISA-GSHPYRTAQL----HIDPEYLIGILTKLETGGLVRHRDTSFA 56 Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87 L RP I++LDV++ +E Sbjct: 57 DTLSSYELVRPYTSISLLDVLETLDEHLN 85 >gi|161617200|ref|YP_001591165.1| hypothetical protein SPAB_05041 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366564|gb|ABX70332.1| hypothetical protein SPAB_05041 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 243 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA A +S + + + L+ AGI+ + RG Sbjct: 41 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 74 >gi|170738620|ref|YP_001767275.1| AsnC family transcriptional regulator [Methylobacterium sp. 4-46] gi|168192894|gb|ACA14841.1| transcriptional regulator, AsnC family [Methylobacterium sp. 4-46] Length = 153 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M RTD +R+L D +++A+ +S + +Q L++ G++ VR Sbjct: 1 MRAPDRTD--LRMLRLL--QEDGRLTNAELAQRVNLSPATCHRRMQRLLREGLITGVR 54 >gi|124441841|gb|ABN11538.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441845|gb|ABN11541.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441849|gb|ABN11544.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441869|gb|ABN11559.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441873|gb|ABN11562.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441877|gb|ABN11565.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] gi|124441881|gb|ABN11568.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus subtilis] Length = 319 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%) Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70 L+ + +I++A S ++K ++ L K G VE VR + G RL + Sbjct: 3 LIELFSQAGSEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 60 Query: 71 ----DQITIL 76 +I Sbjct: 61 KLSESEIRFG 70 >gi|108805528|ref|YP_645465.1| GntR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766771|gb|ABG05653.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus DSM 9941] Length = 239 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 18/42 (42%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++I E +S + + Q LV G+V V GR Sbjct: 22 EGEQMPTEAEICERYGVSRHTVRQAFQSLVADGLVYRVPGRG 63 >gi|86739028|ref|YP_479428.1| putative transcriptional regulator [Frankia sp. CcI3] gi|86565890|gb|ABD09699.1| putative transcriptional regulator [Frankia sp. CcI3] Length = 388 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +IA+ +S +++ L+ L +AG+ V RG GG RL Sbjct: 17 GRLTAREIADELEVSVRTVYRDLESLAEAGVPVLADRGATGGYRL 61 >gi|307943578|ref|ZP_07658922.1| regulatory protein GntR HTH [Roseibium sp. TrichSKD4] gi|307773208|gb|EFO32425.1| regulatory protein GntR HTH [Roseibium sp. TrichSKD4] Length = 257 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%) Query: 10 GIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 IR + + + P ++++E +S + + L+ L ++ + RG GG Sbjct: 19 AIRTAIIDGHLVVEERLP-SEAELSERFEVSRSTVREALKRLAAQNLIRSERGSSGG 74 >gi|226360159|ref|YP_002777937.1| MarR family transcriptional regulator [Rhodococcus opacus B4] gi|226238644|dbj|BAH48992.1| putative MarR family transcriptional regulator [Rhodococcus opacus B4] Length = 169 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62 VL + + ++S +A+ S L ++ + KAG V E++RG RG Sbjct: 56 VLASLSGEANRRLQLSLLAQRANASLSRLSHVVTKMEKAGWVRRESIRGSRG 107 >gi|163741211|ref|ZP_02148603.1| transcriptional regulator, GntR family protein [Phaeobacter gallaeciensis 2.10] gi|161385564|gb|EDQ09941.1| transcriptional regulator, GntR family protein [Phaeobacter gallaeciensis 2.10] Length = 253 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74 ++ +++AE +S + + L+ L ++ T RG GG + R A QIT Sbjct: 41 DERLPSEAEMAEQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLSFEEAYAQQIT 100 Query: 75 ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119 ++ + F C A + ++ C PL + L F Sbjct: 101 TSTLLLSMNAVSFDTACEARYALERACAPLAATRRTADHLATMRAEIF 148 >gi|58039045|ref|YP_191009.1| ArsR family transcriptional regulator [Gluconobacter oxydans 621H] gi|58001459|gb|AAW60353.1| Transcriptional regulator ArsR family [Gluconobacter oxydans 621H] Length = 127 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM + D + +S+I I + L + L L +AG++E+ R Sbjct: 26 LMILSALLDSTHAVSEIETMTGIGQPTLSQHLGALRRAGLIESQR 70 >gi|329924212|ref|ZP_08279399.1| arabinose metabolism transcriptional repressor [Paenibacillus sp. HGF5] gi|328940822|gb|EGG37135.1| arabinose metabolism transcriptional repressor [Paenibacillus sp. HGF5] Length = 363 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 4/54 (7%) Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + +IA+ +S + + L K G +E ++G+ R Sbjct: 26 LQAGKQVPSEHEIADQFGVSRQTVRQTFGELEKEGWLERIQGKG---TFARNPA 76 >gi|307327776|ref|ZP_07606959.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] gi|306886488|gb|EFN17491.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] Length = 313 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + +++A +SE + + L +AGI V RGR GG RL Sbjct: 1 MVLLLQARPSITGAELARELEVSERTVTRDAAALSEAGIPVYADRGRAGGYRL 53 >gi|300114551|ref|YP_003761126.1| Crp/Fnr family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540488|gb|ADJ28805.1| transcriptional regulator, Crp/Fnr family [Nitrosococcus watsonii C-113] Length = 214 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 6/50 (12%) Query: 12 RVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVE 55 R L+ AI + I + IA+ S + +I+ L G +E Sbjct: 149 RTLLDLAIEKEGKLIIEERPTHQEIAQRVGASREMVSRIMGDLATGGYIE 198 >gi|56415913|ref|YP_152988.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364842|ref|YP_002144479.1| GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585880|ref|YP_002639679.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|56130170|gb|AAV79676.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096319|emb|CAR61921.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224470408|gb|ACN48238.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322613169|gb|EFY10113.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619204|gb|EFY16087.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626070|gb|EFY22882.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322632417|gb|EFY29165.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635101|gb|EFY31822.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642696|gb|EFY39286.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647985|gb|EFY44457.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650735|gb|EFY47136.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652918|gb|EFY49255.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657233|gb|EFY53513.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662279|gb|EFY58494.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322672084|gb|EFY68199.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675806|gb|EFY71878.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681778|gb|EFY77804.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322717027|gb|EFZ08598.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193299|gb|EFZ78514.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323207225|gb|EFZ92177.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211427|gb|EFZ96268.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218527|gb|EGA03235.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220990|gb|EGA05422.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225966|gb|EGA10185.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231646|gb|EGA15758.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236105|gb|EGA20183.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239473|gb|EGA23522.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323249296|gb|EGA33213.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250461|gb|EGA34344.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258915|gb|EGA42567.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260160|gb|EGA43783.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265279|gb|EGA48776.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270501|gb|EGA53947.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625786|gb|EGE32131.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629482|gb|EGE35825.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 243 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA A +S + + + L+ AGI+ + RG Sbjct: 41 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 74 >gi|330809130|ref|YP_004353592.1| GntR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377238|gb|AEA68588.1| putative transcription factor, GntR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 243 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 14 LMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ + + S +A ++ + L L L + G++ET RGR GG +C Sbjct: 26 MIDLGLLVEGEQLPSESTLATQLGVATVTLRDALAALRERGVIETRRGRNGGSFICAAPQ 85 Query: 72 Q 72 Sbjct: 86 T 86 >gi|319792579|ref|YP_004154219.1| GntR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595042|gb|ADU36108.1| GntR domain protein [Variovorax paradoxus EPS] Length = 285 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 38/121 (31%), Gaps = 20/121 (16%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--------GG-VRLCRP 69 D S I +A +S + + L L G+VET+ G GG RL Sbjct: 53 RPGDKLPTESAIMQAYGVSRTVVREALSKLQAGGLVETLHGVGTFVLQPRPGGVFRL--D 110 Query: 70 ADQI--TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 +I ++ DV+ E + L S L A D +I Sbjct: 111 PGEIAASV-DVLAVLELRISL------ETESAGLAASRRTEEQLVAMRQALDDFEHNVTI 163 Query: 128 E 128 Sbjct: 164 A 164 >gi|312138661|ref|YP_004005997.1| DeoR family transcriptional regulator [Rhodococcus equi 103S] gi|325676270|ref|ZP_08155949.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311888000|emb|CBH47312.1| putative DeoR family transcriptional regulator [Rhodococcus equi 103S] gi|325552831|gb|EGD22514.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 322 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 ++AE I+ + + + L G V+ G GG RL A+ Sbjct: 25 ELAERLDITPRTVRRDVDKLRGLGYPVDATVGVGGGYRLGAGAE 68 >gi|262370098|ref|ZP_06063425.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262315137|gb|EEY96177.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 256 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ I ++ + + I+ +S+ ++ L+ LV AG+++ + G Sbjct: 1 MALSSFGK--ILTVLDLFSVSRPIINVDIISAELGLSQPTSYRYLKELVSAGLLQRLSGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFV 88 G L QI +LD + + T+ + Sbjct: 59 SGDYTLG---SQIAVLDYISRTTDPLLQI 84 >gi|320011193|gb|ADW06043.1| DeoR family transcriptional regulator [Streptomyces flavogriseus ATCC 33331] Length = 348 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +S + + Q L +AG+ V RGR GG RL Sbjct: 36 MVLLLQSRPSMTAAELARELEVSARTVTRDAQALSEAGVPVYADRGRAGGYRL 88 >gi|239830906|ref|ZP_04679235.1| Xylose repressor [Ochrobactrum intermedium LMG 3301] gi|239823173|gb|EEQ94741.1| Xylose repressor [Ochrobactrum intermedium LMG 3301] Length = 459 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 20/97 (20%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG------ 62 R+++ + R + IA +S + I++ L K G++ E VRGR G Sbjct: 79 RLVLALVRRHGALAR-ADIARLTGLSAQTVSVIIRALEKDGLITQGERVRGRVGQPSMPM 137 Query: 63 ----------GVRLCRPADQITILDVVKATEESFFVA 89 G+++ R + +I ++D + A E + Sbjct: 138 RLAADGVFSFGLKIGRRSAEIILMDFLGAIRERRHIT 174 >gi|226360902|ref|YP_002778680.1| IclR family transcriptional regulator [Rhodococcus opacus B4] gi|226239387|dbj|BAH49735.1| putative IclR family transcriptional regulator [Rhodococcus opacus B4] Length = 270 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 16/106 (15%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + ++IA + + + +++ L + G VE G RG +L V Sbjct: 34 VAAEGRVGATEIAMRLGVHKSTVSRLIASLQQRGFVE-EAGVRGKYQLG--------FAV 84 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 V+ E + + + +C L + +N VL Sbjct: 85 VRLAEATVARSGLVEVAQPECD-----RLADAFGETVN--LAVLDG 123 >gi|222148172|ref|YP_002549129.1| transcriptional regulator ArsR family [Agrobacterium vitis S4] gi|221735160|gb|ACM36123.1| transcriptional regulator ArsR family [Agrobacterium vitis S4] Length = 114 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +R+++ C + + ++ E I + L + L L +AGIVET R G++ RL Sbjct: 37 VRLMLVCTLVEGE-WSVGELEEKLDIHQPTLSQQLTVLREAGIVETRREGKQIFYRLTEA 95 >gi|217976298|ref|YP_002360445.1| regulatory protein ArsR [Methylocella silvestris BL2] gi|217501674|gb|ACK49083.1| regulatory protein ArsR [Methylocella silvestris BL2] Length = 114 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 14/42 (33%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H +IA + L L +AG++ + R Sbjct: 25 LVRHEPDGLSAGEIARRLGVPHNTLSTHFSVLARAGLIRSER 66 >gi|150401183|ref|YP_001324949.1| signal transduction protein [Methanococcus aeolicus Nankai-3] gi|150013886|gb|ABR56337.1| putative signal transduction protein with CBS domains [Methanococcus aeolicus Nankai-3] Length = 302 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-------- 65 L+ + + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LIAIYEEKNKAVKGTEIAIKLNRNPGTIRNQMQALRALNLVDGVPGPKGGYVPTGQAYRS 73 Query: 66 --LCRPADQITI 75 L IT+ Sbjct: 74 IGLLCDKKDITV 85 >gi|329923022|ref|ZP_08278538.1| FCD domain protein [Paenibacillus sp. HGF5] gi|328941795|gb|EGG38080.1| FCD domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 D ++A++ IS L + + L + G++E G GG L + D Sbjct: 29 APGDVLPTERELAQSFGISRGTLREAFRILEREGLIEARPG--GGRFLSKALD 79 >gi|261408114|ref|YP_003244355.1| GntR domain-containing protein [Paenibacillus sp. Y412MC10] gi|261284577|gb|ACX66548.1| GntR domain protein [Paenibacillus sp. Y412MC10] Length = 232 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 D ++A++ IS L + + L + G++E G GG L + D Sbjct: 29 APGDVLPTERELAQSFGISRGTLREAFRILEREGLIEARPG--GGRFLSKALD 79 >gi|126698110|ref|YP_001087007.1| DeoR family transcriptional regulator [Clostridium difficile 630] gi|254974131|ref|ZP_05270603.1| DeoR family transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091532|ref|ZP_05321010.1| DeoR family transcriptional regulator [Clostridium difficile CIP 107932] gi|255099637|ref|ZP_05328614.1| DeoR family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305521|ref|ZP_05349693.1| DeoR family transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313259|ref|ZP_05354842.1| DeoR family transcriptional regulator [Clostridium difficile QCD-76w55] gi|255515949|ref|ZP_05383625.1| DeoR family transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649040|ref|ZP_05395942.1| DeoR family transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682231|ref|YP_003213516.1| DeoR family transcriptional regulator [Clostridium difficile CD196] gi|260685830|ref|YP_003216963.1| DeoR family transcriptional regulator [Clostridium difficile R20291] gi|306519153|ref|ZP_07405500.1| DeoR-family transcriptional regulator [Clostridium difficile QCD-32g58] gi|115249547|emb|CAJ67364.1| Transcriptional regulator, DeoR family [Clostridium difficile] gi|260208394|emb|CBA60917.1| DeoR-family transcriptional regulator [Clostridium difficile CD196] gi|260211846|emb|CBE02259.1| DeoR-family transcriptional regulator [Clostridium difficile R20291] Length = 303 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + T+ I +L+ N ++A+ +S +++ ++ L +G+ V +G Sbjct: 1 MKINRLTEI-IVILL-----NKKLVTAKELADRFEVSTRTIYRDIETLSMSGVPVYMTKG 54 Query: 60 RRGGVRLCRPADQITI 75 + GG+ L ++ +I Sbjct: 55 KGGGISLI---EEYSI 67 >gi|21227136|ref|NP_633058.1| transcriptional repressor [Methanosarcina mazei Go1] gi|20905467|gb|AAM30730.1| Transcriptional repressor [Methanosarcina mazei Go1] Length = 217 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 13/129 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 MH + +Y + ++Y N P + QIAE +S + ++++ L G VE Sbjct: 1 MHTDRLEEY-LETILYLITKNQSPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYK--P 57 Query: 61 RGGVRLCRPADQITIL-----DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115 GV L + + V++ + +HK C L +V L Sbjct: 58 YQGVELTEKGAEEAVRIKRKHQVLETFLAEVLDFDRREAHKEACELE-----HAVSDSVL 112 Query: 116 NAFFDVLTQ 124 +D L Sbjct: 113 ERIYDFLGN 121 >gi|89067759|ref|ZP_01155213.1| transcriptional regulator, ArsR family protein [Oceanicola granulosus HTCC2516] gi|89046729|gb|EAR52784.1| transcriptional regulator, ArsR family protein [Oceanicola granulosus HTCC2516] Length = 120 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +L A + P R++ IA S + K ++ L AG+V Sbjct: 27 ILTLLA--QEGPARVTDIAGRFDTSLNAVSKHIKVLENAGLVT 67 >gi|271963299|ref|YP_003337495.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270506474|gb|ACZ84752.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 239 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + + ++A IS + L + ++ L +AG + RGR GG Sbjct: 33 LGVVTEKLPPERELAVQLGISRVTLREAIRALQEAGYLTVRRGRYGG 79 >gi|164687044|ref|ZP_02211072.1| hypothetical protein CLOBAR_00670 [Clostridium bartlettii DSM 16795] gi|164603929|gb|EDQ97394.1| hypothetical protein CLOBAR_00670 [Clostridium bartlettii DSM 16795] Length = 247 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND +A +S L + L L + G+++ +RG+ Sbjct: 33 KNDRLPSEPDLARDLGVSRTTLRQALTLLQEDGLIKIIRGKG 74 >gi|317153119|ref|YP_004121167.1| ribonuclease BN [Desulfovibrio aespoeensis Aspo-2] gi|316943370|gb|ADU62421.1| ribonuclease BN [Desulfovibrio aespoeensis Aspo-2] Length = 474 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 22/86 (25%) Query: 10 GIRVLMYCAIH--NDYPN-RISQIAEACCISELFLFKILQPLVKAGI----------VET 56 + ++ A + P + +I++ + + + L KAG V Sbjct: 323 AVLMMSLLARRFRDGRPLPSVEEISDGLMAPASLVSDLFRLLQKAGYTVLTDDQDHEV-- 380 Query: 57 VRGRRGGVRLCRPADQITILDVVKAT 82 R D+I +LDVV+ Sbjct: 381 -------YAPARALDEIRVLDVVRVV 399 >gi|251798051|ref|YP_003012782.1| ArsR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545677|gb|ACT02696.1| transcriptional regulator, ArsR family [Paenibacillus sp. JDR-2] Length = 310 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62 ++ N+ P I ++AE +S + K +Q + + G++ E++ G RG Sbjct: 24 MIEL--LNNGPMSIKELAETLGLSSAIVTKHIQKMEEGGLIKTESLSGTRG 72 >gi|271965514|ref|YP_003339710.1| helix-turn-helix type 11 domain-containing protein [Streptosporangium roseum DSM 43021] gi|270508689|gb|ACZ86967.1| helix-turn-helix, type 11 [Streptosporangium roseum DSM 43021] Length = 318 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 RVL I P ++A + E + + L + G+ VE RGR GG RL Sbjct: 5 RVLALLEILQAGPGLTGPELAARLEVDERTVRRYAVKLSELGVPVEAERGRHGGYRL 61 >gi|254502459|ref|ZP_05114610.1| HTH domain family [Labrenzia alexandrii DFL-11] gi|222438530|gb|EEE45209.1| HTH domain family [Labrenzia alexandrii DFL-11] Length = 341 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 + +AE +S +++ + L+ G+ ++ RG GG RL + Sbjct: 20 VPATVLAERFHVSLRTVYRDIDRLIALGVPIDAERGAEGGYRLAK 64 >gi|254169351|ref|ZP_04876181.1| hypothetical protein ABOONEI_2511 [Aciduliprofundum boonei T469] gi|289596704|ref|YP_003483400.1| AAA ATPase [Aciduliprofundum boonei T469] gi|197621714|gb|EDY34299.1| hypothetical protein ABOONEI_2511 [Aciduliprofundum boonei T469] gi|289534491|gb|ADD08838.1| AAA ATPase [Aciduliprofundum boonei T469] Length = 390 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 Y A+++ S +A A IS L K L L K+GI+ Sbjct: 209 YIAVNSGTLLSYSNMANALGISYQTLRKYLDALRKSGII 247 >gi|15608857|ref|NP_216235.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15841179|ref|NP_336216.1| Crp family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31792907|ref|NP_855400.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121637627|ref|YP_977850.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661517|ref|YP_001283040.1| Crp family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148822925|ref|YP_001287679.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|215403977|ref|ZP_03416158.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215411367|ref|ZP_03420175.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215427040|ref|ZP_03424959.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215430612|ref|ZP_03428531.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215445905|ref|ZP_03432657.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218753427|ref|ZP_03532223.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|224990102|ref|YP_002644789.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799242|ref|YP_003032243.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254231914|ref|ZP_04925241.1| hypothetical protein TBCG_01673 [Mycobacterium tuberculosis C] gi|254364557|ref|ZP_04980603.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|254550730|ref|ZP_05141177.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186672|ref|ZP_05764146.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260204989|ref|ZP_05772480.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289447334|ref|ZP_06437078.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289554508|ref|ZP_06443718.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289574387|ref|ZP_06454614.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289745843|ref|ZP_06505221.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289753810|ref|ZP_06513188.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289757828|ref|ZP_06517206.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289761875|ref|ZP_06521253.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294993171|ref|ZP_06798862.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297634272|ref|ZP_06952052.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297731259|ref|ZP_06960377.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298525217|ref|ZP_07012626.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775905|ref|ZP_07414242.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779723|ref|ZP_07418060.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306784457|ref|ZP_07422779.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306788823|ref|ZP_07427145.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306793159|ref|ZP_07431461.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306797538|ref|ZP_07435840.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306803419|ref|ZP_07440087.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306807999|ref|ZP_07444667.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306967818|ref|ZP_07480479.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306972014|ref|ZP_07484675.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307079725|ref|ZP_07488895.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307084304|ref|ZP_07493417.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313658591|ref|ZP_07815471.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|1654021|emb|CAB03703.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13881400|gb|AAK46030.1| transcriptional regulator, Crp family [Mycobacterium tuberculosis CDC1551] gi|31618498|emb|CAD94450.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121493274|emb|CAL71745.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600973|gb|EAY59983.1| hypothetical protein TBCG_01673 [Mycobacterium tuberculosis C] gi|134150071|gb|EBA42116.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148505669|gb|ABQ73478.1| Crp family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148721452|gb|ABR06077.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224773215|dbj|BAH26021.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320745|gb|ACT25348.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289420292|gb|EFD17493.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289439140|gb|EFD21633.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289538818|gb|EFD43396.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289686371|gb|EFD53859.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289694397|gb|EFD61826.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289709381|gb|EFD73397.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713392|gb|EFD77404.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298495011|gb|EFI30305.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308215655|gb|EFO75054.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327373|gb|EFP16224.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308330816|gb|EFP19667.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308334639|gb|EFP23490.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308338426|gb|EFP27277.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308342149|gb|EFP31000.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308345621|gb|EFP34472.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308349936|gb|EFP38787.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308354557|gb|EFP43408.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308358534|gb|EFP47385.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308362474|gb|EFP51325.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308366093|gb|EFP54944.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323719810|gb|EGB28924.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326903334|gb|EGE50267.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328458994|gb|AEB04417.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 259 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +L H ++ ++I E ++ + +IL L G+V + RG RG RL Sbjct: 19 AAELLRVLQAHPGGLSQ-AEIGERVGMARSTVSRILNALEDEGLVAS-RGARGPYRLGP- 75 Query: 70 ADQIT 74 +IT Sbjct: 76 --EIT 78 >gi|302558027|ref|ZP_07310369.1| AsnC family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475645|gb|EFL38738.1| AsnC family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 112 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 RVL+ A D R+ +AE I+E + I+ L AG + R Sbjct: 20 RVLIALAQDPDA--RLRDVAERIGITERAVQLIVADLETAGYLTRTR 64 >gi|261403034|ref|YP_003247258.1| phosphate uptake regulator, PhoU [Methanocaldococcus vulcanius M7] gi|261370027|gb|ACX72776.1| phosphate uptake regulator, PhoU [Methanocaldococcus vulcanius M7] Length = 281 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 IRV++ + P +IAE IS ++ K+L+PL+ G+V+ Sbjct: 13 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDKGVVK 52 >gi|271965550|ref|YP_003339746.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508725|gb|ACZ87003.1| DeoR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 333 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++AE +S + + + L + G V+ G GG RL P Sbjct: 31 SELAERLRVSPRTIRRDIDRLRELGYPVQASMGAVGGYRLVAGAAMPP 78 >gi|312915184|dbj|BAJ39158.1| hypothetical protein STMDT12_C42150 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 243 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74 >gi|170747798|ref|YP_001754058.1| ArsR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654320|gb|ACB23375.1| transcriptional regulator, ArsR family [Methylobacterium radiotolerans JCM 2831] Length = 118 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 10/90 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +R++ +AEA +S + L+ L AG+V + R GR P Sbjct: 19 LRLVRALVTAGPGGLASGALAEAVGVSAATVSHHLKELSHAGLVASRREGRSIIYSAAYP 78 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDC 99 A + D++ +F + +C C Sbjct: 79 A----LSDLI-----AFLMKDCCQGRPEVC 99 >gi|153853509|ref|ZP_01994889.1| hypothetical protein DORLON_00878 [Dorea longicatena DSM 13814] gi|149753664|gb|EDM63595.1| hypothetical protein DORLON_00878 [Dorea longicatena DSM 13814] Length = 326 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 ++ +D Q+ E +S ++K++ L K G +E VR + G RL D Sbjct: 5 ILRLLKESDTYISGQQLCEQFQVSRTAIWKVIDQLKKEGYEIEAVRNK--GYRLIDSPDV 62 Query: 73 ITILDV 78 ++ ++ Sbjct: 63 MSKAEI 68 >gi|57234340|ref|YP_181632.1| hypothetical protein DET0907 [Dehalococcoides ethenogenes 195] gi|57224788|gb|AAW39845.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195] Length = 111 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 11/82 (13%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 T++ + VL + A H+ +IAE I+E + KI+ L G + + GR R Sbjct: 8 TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLEAEGYIAKKKEGRGIKYR 64 Query: 66 LCRPAD-------QITILDVVK 80 + +I I D ++ Sbjct: 65 INPDLSLRHESYQEIIIGDFLE 86 >gi|257126044|ref|YP_003164158.1| hypothetical protein Lebu_1278 [Leptotrichia buccalis C-1013-b] gi|257049983|gb|ACV39167.1| Helix-turn-helix type 11 domain protein [Leptotrichia buccalis C-1013-b] Length = 299 Score = 37.2 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 VL+ N +++E +S +++ ++ L AGI + ++RG+ GG+RL Sbjct: 10 VLILL---NKKTITAKKLSEHFNVSIRTIYRDIEALSFAGIPIYSLRGKNGGIRL 61 >gi|253574745|ref|ZP_04852085.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str. D14] gi|251845791|gb|EES73799.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str. D14] Length = 366 Score = 37.2 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +IAE +S + + L K G +E ++G+ Sbjct: 25 LQPGKQVPSENEIAEQFGLSRQTVRQTFGELEKEGWLERIQGKG 68 >gi|237741097|ref|ZP_04571578.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|229430629|gb|EEO40841.1| transcriptional regulator [Fusobacterium sp. 4_1_13] Length = 474 Score = 37.2 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K++Q L + G + +++G+ Sbjct: 32 ENDKFYSVRQISIKYEVNLNTVLKVVQMLEEEGYLYSIKGKG 73 >gi|225872232|ref|YP_002753687.1| putative sugar uptake ABC transporter, solute-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225794334|gb|ACO34424.1| putative sugar uptake ABC transporter, solute-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 369 Score = 37.2 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 ++ D P + I + IS+ +++IL+ V G + +G G RL ++ Sbjct: 21 ILELLQQEDKPMALEAIYQRTRISKTTVYRILKTFVHRGYLAQSQG--GLYRLVSRPRKV 78 Query: 74 TIL 76 Sbjct: 79 RFG 81 >gi|239826909|ref|YP_002949533.1| GntR family transcriptional regulator [Geobacillus sp. WCH70] gi|239807202|gb|ACS24267.1| transcriptional regulator, GntR family with aminotransferase domain [Geobacillus sp. WCH70] Length = 490 Score = 37.2 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 21/41 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + Q+++ +S + + K Q L + G VE+ +G+ Sbjct: 33 GEKLPSVRQLSKELGVSLVTVQKAYQQLQQKGYVESFQGKG 73 >gi|16119304|ref|NP_396010.1| GntR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15161814|gb|AAK90451.1| transcriptional regulator, GntR family [Agrobacterium tumefaciens str. C58] Length = 234 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 11 IRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R + A + D ++A +S + + L+ L G++ + RG Sbjct: 21 LRAIKSGAYNPDERLPTEHELAAEFEVSRPVIREALKRLRDQGLIYSRRGAG 72 >gi|72161958|ref|YP_289615.1| ArsR family transcriptional regulator [Thermobifida fusca YX] gi|71915690|gb|AAZ55592.1| transcriptional regulator, ArsR family [Thermobifida fusca YX] Length = 125 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + A +S+ + L+ L +AG++ R Sbjct: 46 LRLLSMIASHPKGEACVCDLTAAFDLSQPTISHHLKLLRQAGLITAER 93 >gi|322370532|ref|ZP_08045090.1| transcriptional regulator, MarR family protein [Haladaptatus paucihalophilus DX253] gi|320549949|gb|EFW91605.1| transcriptional regulator, MarR family protein [Haladaptatus paucihalophilus DX253] Length = 237 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR 61 R +Y AI ++ +S ++E I + ++ L + G+VE TVRG+R Sbjct: 93 RAKIYDAIADEPGLSLSALSERTEIPRSTVRYHVRILQEEGLVETTTVRGKR 144 >gi|288922823|ref|ZP_06416989.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] gi|288345838|gb|EFC80201.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] Length = 364 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +IA+ +S +++ ++ L AGI V RG GG RL Sbjct: 14 QARGRLTAREIADELAVSVRTVYRDVESLAGAGIPVVAERGSTGGYRL 61 >gi|225376464|ref|ZP_03753685.1| hypothetical protein ROSEINA2194_02106 [Roseburia inulinivorans DSM 16841] gi|225211840|gb|EEG94194.1| hypothetical protein ROSEINA2194_02106 [Roseburia inulinivorans DSM 16841] Length = 305 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + ++AE +S + + ++ L KAGI + T +G GG+ L Sbjct: 15 QEEKTTAPELAEKFEVSRRTINRDIEDLCKAGIPIRTAQGTGGGISL 61 >gi|169634571|ref|YP_001708307.1| putative transcriptional regulator [Acinetobacter baumannii SDF] gi|169153363|emb|CAP02480.1| putative transcriptional regulator [Acinetobacter baumannii] Length = 257 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ I ++ + + I E +S+ ++ L+ LV A +++ + G Sbjct: 1 MAISSFGK--ILTVLDLFSVSRTVINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I +LD V + T+ ++ F + ++ C L + L Sbjct: 59 SGDYTLG---SKIAVLDYVSRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107 >gi|182419261|ref|ZP_02950514.1| lactose phosphotransferase system repressor [Clostridium butyricum 5521] gi|237668033|ref|ZP_04528017.1| lactose phosphotransferase system repressor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376901|gb|EDT74472.1| lactose phosphotransferase system repressor [Clostridium butyricum 5521] gi|237656381|gb|EEP53937.1| lactose phosphotransferase system repressor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 259 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 13/74 (17%) Query: 1 MHL-----TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M + +KR +Y +L Y + D +++AE +S L L + Q L G+V Sbjct: 1 MKINTSIISKRREY---ILKYLKEYPD--ISTAELAEKLNVSSLTLRRDFQALENDGLV- 54 Query: 56 TVRGRRGGVRLCRP 69 VR GG +L Sbjct: 55 -VR-YYGGAKLIED 66 >gi|251797915|ref|YP_003012646.1| GntR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545541|gb|ACT02560.1| transcriptional regulator, GntR family [Paenibacillus sp. JDR-2] Length = 131 Score = 37.2 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 D + +A I+ + + Q L + GIVET RG Sbjct: 31 GDKIESVRDLALELQINPNTIQRTFQELEREGIVETRRG 69 >gi|319649365|ref|ZP_08003523.1| hypothetical protein HMPREF1013_00127 [Bacillus sp. 2_A_57_CT2] gi|317398999|gb|EFV79679.1| hypothetical protein HMPREF1013_00127 [Bacillus sp. 2_A_57_CT2] Length = 322 Score = 37.2 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + N+ ++A+ ++E + + ++ L AGI V RG+ GG +L Sbjct: 9 ILLLLQNNERMTTRELAKELEVTERTIHRDMEALSAAGIPVLAERGKFGGWKL 61 >gi|126660710|ref|ZP_01731809.1| hypothetical protein CY0110_09420 [Cyanothece sp. CCY0110] gi|126618008|gb|EAZ88778.1| hypothetical protein CY0110_09420 [Cyanothece sp. CCY0110] Length = 327 Score = 37.2 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 Q+A + + K+ Q L +AG+VE++ G G + + I+ Sbjct: 39 STRQLATMTGLHRNTISKVYQQLEEAGLVESIAG-SGIYVKAQNNEDISF 87 >gi|146295212|ref|YP_001178983.1| regulatory protein GntR, HTH [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408788|gb|ABP65792.1| transcriptional regulator, GntR family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 121 Score = 37.2 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + + ++A+ ++ + ++LQ L + ++ T RG Sbjct: 28 QPGEKLSSVREMAQMFGVNPNTIQRVLQELERENLIFTERGIG 70 >gi|293607627|ref|ZP_06689961.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814060|gb|EFF73207.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 285 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 13/115 (11%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------RRGGVRLCRPAD 71 D S+I +S + + L L +G+VET G G V Sbjct: 79 RPGDKLPTESEIMRQFGVSRTVVREALSRLQASGLVETHHGVGTYALEPSGSVDFRVDPA 138 Query: 72 QI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAFFDVLTQ 124 I T+ DV+ E C S + + +R+AL+ F L Sbjct: 139 DIATVRDVLVLLELRI----CLESEAAGLAAIRRSEVQLQEMRRALDLFKSALES 189 >gi|290954938|ref|YP_003486120.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260644464|emb|CBG67549.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 321 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG 63 ++ A + ++A A +S + + L L AG+ V RGR GG Sbjct: 10 MLLLASRD--AVTTQELASALGVSLRTITRDLNWLRDAGLPVTAQRGRLGG 58 >gi|322437600|ref|YP_004219690.1| transcriptional regulator, AraC family [Acidobacterium sp. MP5ACTX9] gi|321165493|gb|ADW71196.1| transcriptional regulator, AraC family [Acidobacterium sp. MP5ACTX9] Length = 294 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 RVL Y A H + + ++A IS +L + + Sbjct: 196 RVLSYIAEHLNESITLEELARVAEISPNYLIALFRQ 231 >gi|312139804|ref|YP_004007140.1| DeoR family transcriptional regulator [Rhodococcus equi 103S] gi|325676744|ref|ZP_08156417.1| TonB-dependent receptor [Rhodococcus equi ATCC 33707] gi|311889143|emb|CBH48456.1| putative DeoR family transcritional regulator [Rhodococcus equi 103S] gi|325552292|gb|EGD21981.1| TonB-dependent receptor [Rhodococcus equi ATCC 33707] Length = 231 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66 + L + ++A +S + + L L +G ++ + G GG L Sbjct: 7 LHALSEMLRRSGPRGCTAERLATEFGVSVRTVKRDLAALENSGALLWSRPGPGGGYGL 64 >gi|154505275|ref|ZP_02042013.1| hypothetical protein RUMGNA_02789 [Ruminococcus gnavus ATCC 29149] gi|153794473|gb|EDN76893.1| hypothetical protein RUMGNA_02789 [Ruminococcus gnavus ATCC 29149] Length = 326 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATE 83 QI E +S ++K+++ L + G VE VR R G RL D ++ ++V + Sbjct: 16 VSGQQICERFQVSRTAVWKVIKQLKEEGYEVEAVRNR--GYRLSSLPDILSREEIVSQID 73 >gi|119964331|ref|YP_946286.1| IclR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951190|gb|ABM10101.1| putative transcriptional regulator, IclR family [Arthrobacter aurescens TC1] Length = 268 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 13/89 (14%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR- 61 + D +++L A D +IAE I + + +++ LV IV + RG+ Sbjct: 21 QSVDRALQILEILAREGDAGVS--EIAEEMGIHKSTVSRLVGSLVNRDIVRQNSERGKYQ 78 Query: 62 ---GGVRLCRP-ADQITI----LDVVKAT 82 G +RL ++++ +V++A Sbjct: 79 LGFGILRLASSIPGRLSVVHEAREVLEAL 107 >gi|94313372|ref|YP_586581.1| GntR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357224|gb|ABF11312.1| transcriptional regulator, GntR family [Cupriavidus metallidurans CH34] Length = 252 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H ++A A +S + + + L +G VET RG Sbjct: 44 AHGQRLPTEHELATAFDVSRNVVREAIARLKLSGYVETRRGTG 86 >gi|319746102|gb|EFV98376.1| RepE protein [Streptococcus agalactiae ATCC 13813] Length = 497 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Query: 6 RTDYGIRVLMYCA--IHNDYP---NRISQIAEACCISELFLFKILQPLV-KAGIVETVR- 58 +TD V+ Y ++ P +I E I E L K+L+ L + I TV+ Sbjct: 373 KTD----VMAYLEGFYQSEDPFIQTTKKEIREKLNIPERSLDKVLKVLKTEQKIFFTVKH 428 Query: 59 GRRGGVRLC 67 GR GG+RL Sbjct: 429 GRGGGIRLA 437 >gi|319943764|ref|ZP_08018045.1| YihY family protein [Lautropia mirabilis ATCC 51599] gi|319742997|gb|EFV95403.1| YihY family protein [Lautropia mirabilis ATCC 51599] Length = 653 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 17/143 (11%) Query: 10 GIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVR 65 + ++ + + R ++A + IL+ LV GIV V + Sbjct: 319 ALAIMQALGERYLQGNAALRTEELARRFHTPGYAIDGILEALVAHGIVVRVDKSEPAAWM 378 Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125 R IT V++A + I P + + A + VL+ Sbjct: 379 PGRDLSNITPWQVLEAV---------RHAGDIHPPEPDADRIIQTFSYAQDQMSAVLSTI 429 Query: 126 SIECLV----RNRSSIKKIFNAG 144 S L+ R R ++ G Sbjct: 430 SFRDLLTQPPRERQPVRSNMAHG 452 >gi|306824780|ref|ZP_07458124.1| RepE protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432991|gb|EFM35963.1| RepE protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 500 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Query: 6 RTDYGIRVLMYCA--IHNDYP---NRISQIAEACCISELFLFKILQPLV-KAGIVETVR- 58 +TD V+ Y ++ P +I E I E L K+L+ L + I TV+ Sbjct: 376 KTD----VMAYLEGFYQSEDPFIQTTKKEIREKLNIPERSLDKVLKVLKTEQKIFFTVKH 431 Query: 59 GRRGGVRLC 67 GR GG+RL Sbjct: 432 GRGGGIRLA 440 >gi|303244145|ref|ZP_07330483.1| phosphate uptake regulator, PhoU [Methanothermococcus okinawensis IH1] gi|302485530|gb|EFL48456.1| phosphate uptake regulator, PhoU [Methanothermococcus okinawensis IH1] Length = 283 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 21/33 (63%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 D P +IA+ IS ++ K+L+PL++ G+V Sbjct: 19 DEPETQDEIAQKLNISRRYVAKLLKPLMEKGVV 51 >gi|298483939|ref|ZP_07002109.1| DNA-binding transcriptional activator FucR [Bacteroides sp. D22] gi|298269848|gb|EFI11439.1| DNA-binding transcriptional activator FucR [Bacteroides sp. D22] Length = 331 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|293368959|ref|ZP_06615560.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CMC 3f] gi|292635979|gb|EFF54470.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CMC 3f] Length = 331 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|317128404|ref|YP_004094686.1| iron (metal) dependent repressor, DtxR family [Bacillus cellulosilyticus DSM 2522] gi|315473352|gb|ADU29955.1| iron (metal) dependent repressor, DtxR family [Bacillus cellulosilyticus DSM 2522] Length = 143 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K+ G+V T +G++ G R Sbjct: 13 IYLLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSQYLVYEKYRGLVLTAKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|260175265|ref|ZP_05761677.1| FucR [Bacteroides sp. D2] gi|315923499|ref|ZP_07919739.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697374|gb|EFS34209.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 331 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|237713655|ref|ZP_04544136.1| FucR [Bacteroides sp. D1] gi|262406247|ref|ZP_06082796.1| FucR [Bacteroides sp. 2_1_22] gi|294643739|ref|ZP_06721538.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CC 2a] gi|294810109|ref|ZP_06768780.1| transcriptional regulator, GntR family [Bacteroides xylanisolvens SD CC 1b] gi|229446377|gb|EEO52168.1| FucR [Bacteroides sp. D1] gi|262354950|gb|EEZ04041.1| FucR [Bacteroides sp. 2_1_22] gi|292640923|gb|EFF59142.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CC 2a] gi|294442713|gb|EFG11509.1| transcriptional regulator, GntR family [Bacteroides xylanisolvens SD CC 1b] Length = 331 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|225410057|ref|ZP_03761246.1| hypothetical protein CLOSTASPAR_05278 [Clostridium asparagiforme DSM 15981] gi|225042405|gb|EEG52651.1| hypothetical protein CLOSTASPAR_05278 [Clostridium asparagiforme DSM 15981] Length = 415 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R+++ + + S+IA+ +S + KIL L + G+++++ G+ Sbjct: 17 RLVLSL-MRQNAVISASEIAQRINLSITTVVKILAVLQENGLIKSM-GKG 64 >gi|160885845|ref|ZP_02066848.1| hypothetical protein BACOVA_03849 [Bacteroides ovatus ATCC 8483] gi|237719304|ref|ZP_04549785.1| FucR [Bacteroides sp. 2_2_4] gi|299149295|ref|ZP_07042355.1| FucR [Bacteroides sp. 3_1_23] gi|156108658|gb|EDO10403.1| hypothetical protein BACOVA_03849 [Bacteroides ovatus ATCC 8483] gi|229451164|gb|EEO56955.1| FucR [Bacteroides sp. 2_2_4] gi|298512729|gb|EFI36618.1| FucR [Bacteroides sp. 3_1_23] Length = 331 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|134103187|ref|YP_001108848.1| IclR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003871|ref|ZP_06561844.1| IclR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915810|emb|CAM05923.1| IclR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 257 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L+ +S +AE+ + + +I++ LV AG RR L I Sbjct: 23 LLELMADAGGEVALSDLAESSGLPLPTIHRIMRTLVSAGYARQQPSRR--YALG--PRLI 78 Query: 74 TILD 77 + + Sbjct: 79 RLGE 82 >gi|293602192|ref|ZP_06684642.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292819397|gb|EFF78428.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 235 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPAD 71 + + + +AE +S + + + L + GIVE +G G L A Sbjct: 30 LPGEKLPTEAALAEQFGVSRTVIREAVSRLRQDGIVEARQGSGVYVTGLTGNRALRIDAT 89 Query: 72 QIT----ILDVV---KATEESFF 87 ++T +L VV +A E Sbjct: 90 ELTSLDAVLHVVDLRRALETEIA 112 >gi|242398127|ref|YP_002993551.1| Sugar-specific transcriptional regulator TrmB family [Thermococcus sibiricus MM 739] gi|242264520|gb|ACS89202.1| Sugar-specific transcriptional regulator TrmB family [Thermococcus sibiricus MM 739] Length = 281 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R L+Y + +++ A I + +++ + L K G+V+ ++GR+ Sbjct: 225 RALLYI-LEKGGRASQAEVRTALEIPKTTAWRMFKRLEKQGLVKIIKGRK 273 >gi|241895081|ref|ZP_04782377.1| BglG family transcriptional antiterminator [Weissella paramesenteroides ATCC 33313] gi|241871799|gb|EER75550.1| BglG family transcriptional antiterminator [Weissella paramesenteroides ATCC 33313] Length = 464 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRL 66 ++LM+ D+ I++ +S+ +++++ L + +VE+ RGR G RL Sbjct: 9 KILMFLGQQTDF-VDAQAISQTFDVSKKTVYRMINKLNQEQKVVESQRGR--GYRL 61 >gi|271963654|ref|YP_003337850.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270506829|gb|ACZ85107.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 255 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 4 TKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + T+ R++ A + + ++A +S + + + L GIVE RG Sbjct: 22 SVATEVADRLMTAVAIGDYLPGERLPGERELATILDVSRATVREAIGRLQAVGIVEIKRG 81 Query: 60 RRGG 63 R GG Sbjct: 82 RTGG 85 >gi|77164574|ref|YP_343099.1| Crp family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433971|ref|ZP_05047479.1| cyclic nucleotide-binding domain protein [Nitrosococcus oceani AFC27] gi|76882888|gb|ABA57569.1| transcriptional regulatory protein, Crp family [Nitrosococcus oceani ATCC 19707] gi|207090304|gb|EDZ67575.1| cyclic nucleotide-binding domain protein [Nitrosococcus oceani AFC27] Length = 214 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 6/50 (12%) Query: 12 RVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVE 55 R L+ AI I + IA+ S + +I+ L G +E Sbjct: 149 RTLLDLAIEKGGKLIIEERPTHQEIAQRVGASREMVSRIMGDLATGGYIE 198 >gi|261409432|ref|YP_003245673.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285895|gb|ACX67866.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. Y412MC10] Length = 319 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + + ++Y ++N+ S +AE +S+ +++ + + AGI V + +G Sbjct: 1 MKLER-----LISMIYMLLNNE-ILSASALAEKYNVSQRTIYRDIDAICAAGIPVVSYQG 54 Query: 60 RRGGV 64 GG Sbjct: 55 VNGGY 59 >gi|116872127|ref|YP_848908.1| transcriptional regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741005|emb|CAK20125.1| transcriptional regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 125 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 +Y A D + ++A ++ + + L +AGI+ TVRG G L +I Sbjct: 25 IYAA--GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIYTVRGT--GKYLTEDKRRI 79 >gi|159898470|ref|YP_001544717.1| helix-turn-helix type 11 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891509|gb|ABX04589.1| Helix-turn-helix type 11 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 321 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + S++A+ I + + +Q L GI VE RG G RL Sbjct: 15 LQSRQQISGSELAQRLEIHPRTVRRYIQQLQDMGIPVEAERGIYGAYRL 63 >gi|111018808|ref|YP_701780.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110818338|gb|ABG93622.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 268 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 16/106 (15%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + S+IA + + + +++ L + G VE G RG +L V Sbjct: 32 VAAEGRVGASEIAVRLGVHKSTVSRLIASLQQRGFVE-EAGVRGKYQLG--------FAV 82 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 V+ E + + + +C L + +N VL Sbjct: 83 VRLAEATVAQSGLVEVAQPECD-----RLADAFGETVN--LAVLDG 121 >gi|295106687|emb|CBL04230.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 143 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N+ + +++ ++ + K+ Q L + G + T RG+ Sbjct: 47 ENERLPSVRELSVQLGVNYNTINKVYQDLERDGFIFTRRGKG 88 >gi|152994106|ref|YP_001338941.1| helix-turn-helix type 11 domain-containing protein [Marinomonas sp. MWYL1] gi|150835030|gb|ABR69006.1| Helix-turn-helix type 11 domain protein [Marinomonas sp. MWYL1] Length = 328 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++LM H +++A+AC S +++ ++ L G+ V + +G +GG RL Sbjct: 7 LKMLMMLQTH--EKVTAAELADACETSIRTVYRDIEALSAIGVPVYSEQGVQGGYRL 61 >gi|291618289|ref|YP_003521031.1| TtgV [Pantoea ananatis LMG 20103] gi|291153319|gb|ADD77903.1| TtgV [Pantoea ananatis LMG 20103] Length = 261 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++L H + +IA+ + + +I+ L A +V + GG+RL Sbjct: 22 AAKILNALGEHPGG-MSLGEIAQVVDLPRSTVQRIVAALDSAELVRSS--GAGGLRLG 76 >gi|289435253|ref|YP_003465125.1| birA bifunctional protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171497|emb|CBH28041.1| birA bifunctional protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 326 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|256828707|ref|YP_003157435.1| putative PaaX family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577883|gb|ACU89019.1| putative transcriptional regulator, PaaX family [Desulfomicrobium baculatum DSM 4028] Length = 102 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 14/89 (15%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRR 61 LT T VL + R+ IA I+E + I+ L AG ++ + GRR Sbjct: 13 LTNHT----HVLFCLSRDPG--MRMKDIASEVGITERAVQHIVADLRAAGYLIGSREGRR 66 Query: 62 GGV------RLCRPADQ-ITILDVVKATE 83 RL P + I DV++ E Sbjct: 67 VTYTILRDQRLRHPLESGCCIGDVLEVLE 95 >gi|210622817|ref|ZP_03293361.1| hypothetical protein CLOHIR_01309 [Clostridium hiranonis DSM 13275] gi|210154034|gb|EEA85040.1| hypothetical protein CLOHIR_01309 [Clostridium hiranonis DSM 13275] Length = 71 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG-VRLC- 67 ++L Y + P ++AE +S + + + L AGI + T RGR GG R+ Sbjct: 7 FKILYYLLKNGTTPV--KELAEIFEVSTRTIHRDIDSLGSAGIPICTSRGRHGGVYRISI 64 Query: 68 -RPADQI 73 R A I Sbjct: 65 LRAAKSI 71 >gi|56695382|ref|YP_165730.1| GntR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56677119|gb|AAV93785.1| transcriptional regulator, GntR family [Ruegeria pomeroyi DSS-3] Length = 236 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 11/76 (14%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 YG D +Q+A ++ + + L L G+V RG GV Sbjct: 19 AEGRYG---------EGDRLPTEAQLAATHGVNRHTVRRALADLADQGLVHARRGA--GV 67 Query: 65 RLCRPADQITILDVVK 80 + I V+ Sbjct: 68 FVAARPTDYAIGKRVR 83 >gi|288574050|ref|ZP_06392407.1| biotin/acetyl-CoA-carboxylase ligase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569791|gb|EFC91348.1| biotin/acetyl-CoA-carboxylase ligase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 327 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 ++L I ++ +S ++K + L + G VE+V + G R+ Sbjct: 7 KILTMLKKRQGDFVSGQSICDSLGVSRTAVWKHVNQLKEDGYQVESVPRK--GYRIISSP 64 Query: 71 DQITILDVVKATEESF 86 D +T ++V + F Sbjct: 65 DVLTSEEIVPLLDTDF 80 >gi|82702807|ref|YP_412373.1| ArsR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410872|gb|ABB74981.1| transcriptional regulator, ArsR family [Nitrosospira multiformis ATCC 25196] Length = 113 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72 L+ + P+ + ++ + I + L + L L + G+V T R G+ L P Sbjct: 33 LLILCQLINGPSSVGELEKDLGIRQPTLSQQLTVLREEGLVATERKGKYIIYSLANP--- 89 Query: 73 ITILDVVKATEESFFVAECFASHKID 98 DVV+ E + + C Sbjct: 90 ----DVVRIME-TLYSIYCGGGGNTP 110 >gi|24371812|ref|NP_715854.1| biotin--protein ligase [Shewanella oneidensis MR-1] gi|24345617|gb|AAN53299.1|AE015471_4 birA bifunctional protein [Shewanella oneidensis MR-1] Length = 319 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 14/84 (16%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 + N++ ++A IS + K + L G+ + +V+GR G +L P I+++D Sbjct: 15 LSNEHFVSGEELATQLGISRAAVSKHVDTLEDYGVAIFSVKGR--GYKLANP---ISLID 69 Query: 78 ---VVKATEESFFVAECFASHKID 98 +++A + CF +I Sbjct: 70 SSRLIQAID-----NRCFYFDEIP 88 >gi|332361422|gb|EGJ39226.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK1056] Length = 311 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|332360358|gb|EGJ38170.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK49] Length = 311 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|327473976|gb|EGF19389.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK408] Length = 311 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|327469509|gb|EGF14978.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK330] Length = 311 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|327461337|gb|EGF07668.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK1] gi|327489197|gb|EGF20990.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK1058] Length = 311 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|327459779|gb|EGF06119.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK1057] Length = 311 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|331693989|ref|YP_004330228.1| GntR domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326948678|gb|AEA22375.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190] Length = 249 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 11 IRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R ++ D ++ E +S L + L+ L ++ + RG GG + Sbjct: 18 LRSMIVTGELRPGDRLPPEGELTERMAVSRSTLREALRVLSTQKLLTSSRGVGGGTFVAE 77 Query: 69 PADQ 72 P+ Sbjct: 78 PSTD 81 >gi|325694342|gb|EGD36255.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK150] Length = 311 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|255038357|ref|YP_003088978.1| transcriptional regulator, GntR family [Dyadobacter fermentans DSM 18053] gi|254951113|gb|ACT95813.1| transcriptional regulator, GntR family [Dyadobacter fermentans DSM 18053] Length = 339 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 D I+Q++E +S + K + L+K G++ +VRG+ G + R Sbjct: 34 RGDKIPSINQLSEEYLLSRDTVEKAYKHLIKDGVLISVRGK--GYFINR 80 >gi|226362409|ref|YP_002780187.1| arsenic resistance operon repressor ArsR [Rhodococcus opacus B4] gi|226240894|dbj|BAH51242.1| putative arsenic resistance operon repressor ArsR [Rhodococcus opacus B4] Length = 128 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I+ + +S+ + L+ L AG+++ R Sbjct: 42 LRLLSLIASHAGGEACVCDISASFDLSQPTISHHLKVLRAAGLLDCER 89 >gi|213854844|ref|ZP_03383084.1| GntR family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 203 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|170751887|ref|YP_001758147.1| CRP/FNR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658409|gb|ACB27464.1| putative transcriptional regulator, Crp/Fnr family [Methylobacterium radiotolerans JCM 2831] Length = 257 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 18/93 (19%) Query: 11 IRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +R L+ P +A + +L +IL+ L + G+V RGR Sbjct: 155 LRWLLSLQDRTGGDTLPITHELLASMLGVQRTYLTRILRVLQEQGLVRVGRGR------- 207 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCP 100 ITILD +A S EC A +I C Sbjct: 208 -----ITILD-RRAV--SNAACECHARVRIQCE 232 >gi|315648280|ref|ZP_07901381.1| GntR domain protein [Paenibacillus vortex V453] gi|315276926|gb|EFU40269.1| GntR domain protein [Paenibacillus vortex V453] Length = 232 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 D ++A++ IS L + + L + G++E G GG L + D Sbjct: 31 GDVLPTERELAQSFGISRGTLREAFRILEREGLIEARPG--GGRFLSKALD 79 >gi|289643020|ref|ZP_06475152.1| GntR domain protein [Frankia symbiont of Datisca glomerata] gi|289507151|gb|EFD28118.1| GntR domain protein [Frankia symbiont of Datisca glomerata] Length = 258 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 32 EACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 E IS + + L+ L G+V G GG+ + Q+ + Sbjct: 45 ERFGISPTVMNETLRILRNRGLVGVRPGAGGGIFVASLPPQVRLG 89 >gi|218290689|ref|ZP_03494780.1| transcriptional regulator, IclR family [Alicyclobacillus acidocaldarius LAA1] gi|218239354|gb|EED06552.1| transcriptional regulator, IclR family [Alicyclobacillus acidocaldarius LAA1] Length = 257 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 10/77 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVR 65 RVL + H + +++IAE +++ ++L+ L + V ++ R G Sbjct: 11 AARVLKLLSRHKYRQSTLTEIAERLGVNKTTCLRVLRTLEREDFVSYDPQSRRYSLGPYL 70 Query: 66 L---CRPADQITILDVV 79 + R AD + DV Sbjct: 71 IPLGARAAD---LNDVY 84 >gi|254831624|ref|ZP_05236279.1| hypothetical protein Lmon1_09733 [Listeria monocytogenes 10403S] Length = 236 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 13/62 (20%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56 L+ ++G+R+ ++ + + +A+ S+ + K+L L + GI+E+ Sbjct: 155 LSTLIEFGLRI-------SEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILES 207 Query: 57 VR 58 + Sbjct: 208 QK 209 >gi|16804171|ref|NP_465656.1| hypothetical protein lmo2132 [Listeria monocytogenes EGD-e] gi|224501069|ref|ZP_03669376.1| hypothetical protein LmonFR_00870 [Listeria monocytogenes FSL R2-561] gi|255029700|ref|ZP_05301651.1| hypothetical protein LmonL_12650 [Listeria monocytogenes LO28] gi|16411602|emb|CAD00210.1| lmo2132 [Listeria monocytogenes EGD-e] Length = 243 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 13/62 (20%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56 L+ ++G+R+ ++ + + +A+ S+ + K+L L + GI+E+ Sbjct: 155 LSTLIEFGLRI-------SEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILES 207 Query: 57 VR 58 + Sbjct: 208 QK 209 >gi|47095706|ref|ZP_00233312.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|224500202|ref|ZP_03668551.1| hypothetical protein LmonF1_11174 [Listeria monocytogenes Finland 1988] gi|254826977|ref|ZP_05231664.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254899167|ref|ZP_05259091.1| hypothetical protein LmonJ_05124 [Listeria monocytogenes J0161] gi|254912692|ref|ZP_05262704.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937019|ref|ZP_05268716.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255025466|ref|ZP_05297452.1| hypothetical protein LmonocytFSL_02414 [Listeria monocytogenes FSL J2-003] gi|284802579|ref|YP_003414444.1| hypothetical protein LM5578_2335 [Listeria monocytogenes 08-5578] gi|284995721|ref|YP_003417489.1| hypothetical protein LM5923_2286 [Listeria monocytogenes 08-5923] gi|47015849|gb|EAL06776.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|258599359|gb|EEW12684.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609622|gb|EEW22230.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284058141|gb|ADB69082.1| hypothetical protein LM5578_2335 [Listeria monocytogenes 08-5578] gi|284061188|gb|ADB72127.1| hypothetical protein LM5923_2286 [Listeria monocytogenes 08-5923] gi|293590687|gb|EFF99021.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 236 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 13/62 (20%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56 L+ ++G+R+ ++ + + +A+ S+ + K+L L + GI+E+ Sbjct: 155 LSTLIEFGLRI-------SEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILES 207 Query: 57 VR 58 + Sbjct: 208 QK 209 >gi|328866276|gb|EGG14661.1| transcription factor IIE [Dictyostelium fasciculatum] Length = 479 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 18/45 (40%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +++ + + +IA I + KIL L I+++ Sbjct: 58 IVIDAVLRQKKRVKEDEIANQINIPFKYCRKILMDLRGDSILKSQ 102 >gi|315644546|ref|ZP_07897678.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] gi|315280053|gb|EFU43350.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] Length = 310 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D +R+L D P + Q+AEA I++ + +Q L +A ++ + +G Sbjct: 25 SDVRVRILEAL---GDKPMSVGQLAEALGIAQPTVSINVQMLEQADLIVSSQGAN 76 >gi|313637212|gb|EFS02728.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria seeligeri FSL S4-171] Length = 326 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|296534502|ref|ZP_06896924.1| transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265172|gb|EFH11375.1| transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 105 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C + + + +AE +S+ L + L L + G+V T R Sbjct: 32 RLVLLCHLIREGEITVGGLAERLGLSQPALSQHLGKLREDGLVATRR 78 >gi|255318212|ref|ZP_05359451.1| transcriptional regulator [Acinetobacter radioresistens SK82] gi|262379581|ref|ZP_06072737.1| GntR-family transcriptional regulator [Acinetobacter radioresistens SH164] gi|255304758|gb|EET83936.1| transcriptional regulator [Acinetobacter radioresistens SK82] gi|262299038|gb|EEY86951.1| GntR-family transcriptional regulator [Acinetobacter radioresistens SH164] Length = 239 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +A +S + + + L L G+++T RGR GG Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGG 78 >gi|163736260|ref|ZP_02143679.1| regulatory protein GntR, HTH [Phaeobacter gallaeciensis BS107] gi|161390130|gb|EDQ14480.1| regulatory protein GntR, HTH [Phaeobacter gallaeciensis BS107] Length = 243 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74 ++ +++AE +S + + L+ L ++ T RG GG + R A QIT Sbjct: 31 DERLPSEAEMAEQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLNFEEAYAQQIT 90 Query: 75 ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119 ++ + F C A + ++ C PL + L F Sbjct: 91 TSTLLLSMNAVSFDTACEARYALERACAPLAATRRTADHLATMRAEIF 138 >gi|115534808|ref|YP_783890.1| putative RepS protein [Enterococcus faecalis] gi|312904984|ref|ZP_07764120.1| primase 1 [Enterococcus faecalis TX0635] gi|12956991|emb|CAC29162.1| putative RepS protein [Enterococcus faecalis] gi|310631699|gb|EFQ14982.1| primase 1 [Enterococcus faecalis TX0635] gi|315574648|gb|EFU86839.1| primase 1 [Enterococcus faecalis TX0309B] gi|315582964|gb|EFU95155.1| primase 1 [Enterococcus faecalis TX0309A] Length = 496 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|63021984|ref|YP_232752.1| RepS [Streptococcus pyogenes] gi|63021998|ref|YP_232769.1| RepS [Streptococcus pyogenes] gi|132371|sp|P14752|REPS_STRPY RecName: Full=Protein repS gi|47424|emb|CAA34721.1| unnamed protein product [Streptococcus pyogenes] gi|456363|emb|CAA45928.1| repS [Streptococcus pyogenes] gi|496501|emb|CAA47078.1| RepS [Streptococcus pyogenes] gi|38707183|gb|AAR27193.1| RepS [Streptococcus pyogenes] gi|38707197|gb|AAR27207.1| RepS [Streptococcus pyogenes] gi|739948|prf||2004266A repS protein Length = 496 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|83942473|ref|ZP_00954934.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. EE-36] gi|83846566|gb|EAP84442.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. EE-36] Length = 247 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 9/107 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74 ++ ++++ +S + + L+ L ++ T RG GG + R QIT Sbjct: 31 DERLPSEAELSAQFNVSRATVREALKRLAAQSLIRTQRGATGGAFVNRISFEAAQTQQIT 90 Query: 75 ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118 ++ + + F C FA + PL + L NA Sbjct: 91 TSTLLLSMNDVSFETACEARFALERACAPLSAARRQDHHLDAMQNAL 137 >gi|331267266|ref|YP_004326896.1| Zn(2+)-responsive AdcR transcriptional repressor, MarR family [Streptococcus oralis Uo5] gi|326683938|emb|CBZ01556.1| Zn(2+)-responsive AdcR transcriptional repressor, MarR family [Streptococcus oralis Uo5] Length = 146 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 7 TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D + +LM ++ S++A +S+ + K ++ LVK G++ET R Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85 >gi|297157315|gb|ADI07027.1| DeoR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 330 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++ H P +AE +S + + ++ L AG+ V T RG GG+ L Sbjct: 7 LSIMLLLQTHGQLP--AGALAERMEVSVRTIMRDVEALSAAGVPVYTTRGPHGGIAL 61 >gi|240172183|ref|ZP_04750842.1| hypothetical protein MkanA1_22909 [Mycobacterium kansasii ATCC 12478] Length = 107 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLC--- 67 + + + P ++A I+E + IL L + G ++++ GRR L Sbjct: 28 HAHVLLCVSSGEPLTARELALRIGITERSVQAILTDLTEEGYLIKSKVGRRNVYELNPQG 87 Query: 68 --RPADQI--TILDVVKAT 82 R + T+ ++V A Sbjct: 88 RLRHPLEASHTVGELVTAL 106 >gi|53723809|ref|YP_103334.1| IclR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|67643006|ref|ZP_00441756.1| transcriptional regulator, IclR family [Burkholderia mallei GB8 horse 4] gi|121600089|ref|YP_993535.1| IclR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124384049|ref|YP_001029038.1| IclR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126448519|ref|YP_001081042.1| IclR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|167000642|ref|ZP_02266453.1| transcriptional regulator, IclR family [Burkholderia mallei PRL-20] gi|254177538|ref|ZP_04884193.1| transcriptional regulator, IclR family [Burkholderia mallei ATCC 10399] gi|254200292|ref|ZP_04906658.1| transcriptional regulator, IclR family [Burkholderia mallei FMH] gi|254209368|ref|ZP_04915714.1| transcriptional regulator, IclR family [Burkholderia mallei JHU] gi|254357961|ref|ZP_04974234.1| transcriptional regulator, IclR family [Burkholderia mallei 2002721280] gi|52427232|gb|AAU47825.1| transcriptional regulator, IclR family [Burkholderia mallei ATCC 23344] gi|121228899|gb|ABM51417.1| transcriptional regulator, IclR family [Burkholderia mallei SAVP1] gi|124292069|gb|ABN01338.1| transcriptional regulator, IclR family [Burkholderia mallei NCTC 10229] gi|126241389|gb|ABO04482.1| transcriptional regulator, IclR family [Burkholderia mallei NCTC 10247] gi|147749888|gb|EDK56962.1| transcriptional regulator, IclR family [Burkholderia mallei FMH] gi|147750141|gb|EDK57212.1| transcriptional regulator, IclR family [Burkholderia mallei JHU] gi|148027088|gb|EDK85109.1| transcriptional regulator, IclR family [Burkholderia mallei 2002721280] gi|160698577|gb|EDP88547.1| transcriptional regulator, IclR family [Burkholderia mallei ATCC 10399] gi|238524243|gb|EEP87677.1| transcriptional regulator, IclR family [Burkholderia mallei GB8 horse 4] gi|243063451|gb|EES45637.1| transcriptional regulator, IclR family [Burkholderia mallei PRL-20] Length = 270 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSAPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|332284862|ref|YP_004416773.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330428815|gb|AEC20149.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 252 Score = 37.2 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 IA+ +S L + + L G+V + +GR Sbjct: 45 QAIADRLGVSRTVLREAVSRLKANGLVTSKQGRG 78 >gi|329922569|ref|ZP_08278144.1| HTH domain protein [Paenibacillus sp. HGF5] gi|328942113|gb|EGG38395.1| HTH domain protein [Paenibacillus sp. HGF5] Length = 319 Score = 37.2 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + + ++Y ++N+ S +AE +S+ +++ + + AGI V + +G Sbjct: 1 MKLER-----LISMIYMLLNNE-ILSASALAEKYNVSQRTIYRDIDAICAAGIPVVSYQG 54 Query: 60 RRGGV 64 GG Sbjct: 55 VNGGY 59 >gi|325001511|ref|ZP_08122623.1| IclR family protein transcriptional regulator [Pseudonocardia sp. P1] Length = 215 Score = 37.2 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 ++ P +S+++ + + + +++ L G+VE GG RL I +L++ + Sbjct: 31 DEGPVGVSELSRRLGVGKSAVHRLVTTLAAEGLVEQDP-HTGGYRLG-----IVVLELGR 84 Query: 81 AT 82 A Sbjct: 85 AV 86 >gi|290959687|ref|YP_003490869.1| transcriptional repressor [Streptomyces scabiei 87.22] gi|260649213|emb|CBG72327.1| putative transcriptional repressor [Streptomyces scabiei 87.22] Length = 324 Score = 37.2 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G V+ G GG RL P Sbjct: 26 ELADRLRVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72 >gi|318040143|ref|ZP_07972099.1| transcriptional regulator [Synechococcus sp. CB0101] Length = 136 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 20/125 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA--DQITILDVVKAT 82 RI Q+A+A +S K ++ G++ +GG RL PA +++++ ++A Sbjct: 6 LRIGQVAQATGLS----VKTVRFYSDEGLIHASSRSQGGYRLFDPAVVAELSLIRALRAM 61 Query: 83 EESFF----VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 + + + S +C L S ++ + + + LT LV ++ + Sbjct: 62 DVPLPELKRILDVRRSGHCNCS-----ALKSSIQTRIQSIDERLT-----ELVSMKAELA 111 Query: 139 KIFNA 143 ++ ++ Sbjct: 112 QLLSS 116 >gi|295396470|ref|ZP_06806631.1| GntR-family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294970662|gb|EFG46576.1| GntR-family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 229 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 I + +A +S L +L L GI+E RGR GG R+ Sbjct: 29 IRGEKLPAERDLAIELGVSRSTLRDVLGELQTTGILEISRGRYGGARVVGLPSDY 83 >gi|302535176|ref|ZP_07287518.1| ArsR family transcriptional regulator [Streptomyces sp. C] gi|302444071|gb|EFL15887.1| ArsR family transcriptional regulator [Streptomyces sp. C] Length = 374 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +M C P S++A IS + + L L KAG++ T R Sbjct: 303 MMLCRSLARAPYTTSELARVYGISAPEVSRHLAVLKKAGLMHTRR 347 >gi|315499140|ref|YP_004087944.1| transcriptional regulator, iclr family [Asticcacaulis excentricus CB 48] gi|315417152|gb|ADU13793.1| transcriptional regulator, IclR family [Asticcacaulis excentricus CB 48] Length = 129 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI--VETVRGRRGGVRLCR 68 +R LM +S+IAE ++ +++ LV+ G V G GG RL Sbjct: 58 VRGLMIVEAVASGRGSLSEIAETAGLARSTAYRLASTLVEQGYLSVAPRDGSGGGYRLG- 116 Query: 69 PADQITILD 77 I + Sbjct: 117 -PKFIRLSQ 124 >gi|229111678|ref|ZP_04241226.1| Transcriptional regulator mntR [Bacillus cereus Rock1-15] gi|229129482|ref|ZP_04258453.1| Transcriptional regulator mntR [Bacillus cereus BDRD-Cer4] gi|229146777|ref|ZP_04275142.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST24] gi|228636605|gb|EEK93070.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST24] gi|228654087|gb|EEL09954.1| Transcriptional regulator mntR [Bacillus cereus BDRD-Cer4] gi|228671672|gb|EEL26968.1| Transcriptional regulator mntR [Bacillus cereus Rock1-15] Length = 163 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|213418665|ref|ZP_03351731.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 247 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74 >gi|212538957|ref|XP_002149634.1| O-methyltransferase family protein [Penicillium marneffei ATCC 18224] gi|210069376|gb|EEA23467.1| O-methyltransferase family protein [Penicillium marneffei ATCC 18224] Length = 464 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 D + IAE + E L K+++ + AG + + G Sbjct: 102 DGVVPVRDIAELADVPETILSKVVRMMATAGFL-SQPQPGG 141 >gi|194289424|ref|YP_002005331.1| GntR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223259|emb|CAQ69264.1| putative transcriptional regulator, GntR family [Cupriavidus taiwanensis LMG 19424] Length = 248 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------G--GVRLCRPAD 71 Q+AE +S + ++ + L G VE+ +G G G +L R + Sbjct: 28 GSRLPTGRQLAEQYGVSAAVIREVTEHLRSQGFVESRQGVGCTVRSRTGASGFQLPREPE 87 >gi|90416011|ref|ZP_01223944.1| putative AraC family transcriptional regulator [marine gamma proteobacterium HTCC2207] gi|90332385|gb|EAS47582.1| putative AraC family transcriptional regulator [marine gamma proteobacterium HTCC2207] Length = 326 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 15/34 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45 R L+ + P +IA+ IS+ L ++ Sbjct: 230 RALLLLEQNLSRPLSTDEIADRLNISKRQLERLF 263 >gi|295840569|ref|ZP_06827502.1| GntR family transcriptional regulator [Streptomyces sp. SPB74] gi|295828059|gb|EFG65799.1| GntR family transcriptional regulator [Streptomyces sp. SPB74] Length = 140 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ +R L + A D +Q+ I+ +FK + L + G+V++ +G Sbjct: 16 QIAQQVRQALR-LGHLA-PGDKLPTAAQVVATTAINPNTVFKAYRELEREGLVDSRQGVG 73 >gi|266622318|ref|ZP_06115253.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM 13479] gi|288865962|gb|EFC98260.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM 13479] Length = 239 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 18/42 (42%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D Q+ E +S + + + + LV G +++ RG Sbjct: 30 KGDSFLTERQLQEKYDVSRVTVRQAVSELVNEGYLQSSRGVG 71 >gi|225855400|ref|YP_002736912.1| phage replication protein [Streptococcus pneumoniae JJA] gi|225722639|gb|ACO18492.1| phage replication protein [Streptococcus pneumoniae JJA] Length = 92 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-----RGRR 61 ++ + ++ +IA IS + + + + KAG + TV RGR Sbjct: 1 MVVLSNKENWLVYPEEIARRLNISREMVLRHFKKIEKAGYLRTVKKSLGRGRG 53 >gi|29832562|ref|NP_827196.1| DeoR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29609682|dbj|BAC73731.1| putative DeoR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 323 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 9 MVLLLQSRPTMTGAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61 >gi|325168491|ref|YP_004280281.1| transcriptional regulator protein, arsR family [Agrobacterium sp. H13-3] gi|325064214|gb|ADY67903.1| transcriptional regulator protein, arsR family [Agrobacterium sp. H13-3] Length = 114 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +I ++ + ++AE S+ + + L L G+V T R Sbjct: 28 LSIISEKEISVGELAERLNRSQSAVSQHLARLRADGLVTTRR 69 >gi|254473869|ref|ZP_05087263.1| GntR family regulatory protein [Pseudovibrio sp. JE062] gi|211956979|gb|EEA92185.1| GntR family regulatory protein [Pseudovibrio sp. JE062] Length = 230 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + E +S + ++ L K G ++TVRG Sbjct: 36 LCERYGVSRPVVRGAMERLRKEGYIKTVRGSG 67 >gi|158520355|ref|YP_001528225.1| hypothetical protein Dole_0338 [Desulfococcus oleovorans Hxd3] gi|158509181|gb|ABW66148.1| hypothetical protein Dole_0338 [Desulfococcus oleovorans Hxd3] Length = 136 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 IRVL Y N+ P + S + + + L K GIVE V G G Sbjct: 16 AIRVLTYL---NNKPPTAEDVEGLLGTSSEEVLLVCRKLEKKGIVEAVEGAYG 65 >gi|111018032|ref|YP_701004.1| MarR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110817562|gb|ABG92846.1| probable transcriptional regulator, MarR family protein [Rhodococcus jostii RHA1] Length = 169 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62 VL + + ++S +A+ S L ++ + KAG V E++RG RG Sbjct: 56 VLASLSGETNRRLQLSLLAQRANASLSRLSHVITKMEKAGWVRRESIRGSRG 107 >gi|311898963|dbj|BAJ31371.1| putative GntR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 255 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRG 59 +AE +S + + L L G+V + RG Sbjct: 41 LAEQYGVSRGTVRQALAMLRADGLVTSRRG 70 >gi|299132438|ref|ZP_07025633.1| transcriptional regulator, ArsR family [Afipia sp. 1NLS2] gi|298592575|gb|EFI52775.1| transcriptional regulator, ArsR family [Afipia sp. 1NLS2] Length = 222 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPADQITILDVVKAT 82 + +++ +S + LQ L +A +V+T RG+ RL A+ I ++V+A Sbjct: 39 SVEELSARSNLSFANTSRHLQILRRARLVDTERRGKNVFYRLAGDAEVI---ELVRAL 93 >gi|296119710|ref|ZP_06838267.1| putative transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967301|gb|EFG80569.1| putative transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] Length = 118 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L + P + ++ E +S+ + L+ L +AG+++ VR Sbjct: 47 LRLLSQLSAEGCGPVSVGELTETSGLSQPTVSHHLKRLTEAGLLDKVR 94 >gi|251771585|gb|EES52161.1| regulatory protein, ArsR [Leptospirillum ferrodiazotrophum] Length = 129 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRR 61 L+ +R+ + +I+ +S L L+ + AG+VE T GR Sbjct: 35 LSSGVR--LRIFRLLVSYEPEGLVAGEISSILEVSPTNLSFHLKAMAHAGLVEGTSMGRF 92 Query: 62 GGVRLCRPADQITILDVVKATEESFF-VAE--CFASHKIDCPLVGSCG 106 R R ++ EE + E C A +CP CG Sbjct: 93 VRYR-AR----------IRTMEEVIDYLTENCCQARGDNNCPPSSPCG 129 >gi|256372755|ref|YP_003110579.1| GntR family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256009339|gb|ACU54906.1| regulatory protein GntR HTH [Acidimicrobium ferrooxidans DSM 10331] Length = 245 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +A IS L L L G + T RGR+GG + + + + + Sbjct: 51 LARMLGISLTTLRAALGILRLRGTITTRRGRQGGSVVTADPEAVRAAAIAR 101 >gi|258510181|ref|YP_003183615.1| transcriptional regulator, IclR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476907|gb|ACV57226.1| transcriptional regulator, IclR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 257 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 10/77 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVR 65 RVL + H + +++IAE +++ ++L+ L + V ++ R G Sbjct: 11 AARVLKLLSRHKYRQSTLTEIAERLGVNKTTCLRVLRTLEREDFVSYDPQSRRYSLGPYL 70 Query: 66 L---CRPADQITILDVV 79 + R AD + DV Sbjct: 71 IPLGARAAD---LNDVY 84 >gi|320161008|ref|YP_004174232.1| ArsR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319994861|dbj|BAJ63632.1| ArsR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 194 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +R+L A + + QI+ + +S + L L +AG+V Sbjct: 29 LRILGVLANQS---MSVEQISTSLNLSPSTVSHHLAKLSEAGLVTAK 72 >gi|313632657|gb|EFR99636.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria seeligeri FSL N1-067] Length = 326 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|306828671|ref|ZP_07461864.1| adc operon repressor AdcR [Streptococcus mitis ATCC 6249] gi|304429177|gb|EFM32264.1| adc operon repressor AdcR [Streptococcus mitis ATCC 6249] Length = 146 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 7 TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D + +LM ++ S++A +S+ + K ++ LVK G++ET R Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85 >gi|302550418|ref|ZP_07302760.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302468036|gb|EFL31129.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 346 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +AE +S L + + L G V G GG +L A+ Sbjct: 26 LAERLGVSARTLRRDVDRLRALGYPVNASPGTGGGYQLGAGAE 68 >gi|284929478|ref|YP_003422000.1| GntR family transcriptional repressor [cyanobacterium UCYN-A] gi|284809922|gb|ADB95619.1| transcriptional regulator, GntR family [cyanobacterium UCYN-A] Length = 318 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + I Q+A+ + + KI Q L + G+VE++ G Sbjct: 32 LPGERLPSIRQLAKTTGLHRNTINKIYQQLEEIGLVESIVGSG 74 >gi|85859314|ref|YP_461516.1| ribonuclease BN family membrane protein [Syntrophus aciditrophicus SB] gi|85722405|gb|ABC77348.1| membrane spanning protein ribonuclease BN-like family [Syntrophus aciditrophicus SB] Length = 454 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 P +I+ I F+ ++L L K+ ++ G R +PA I L + Sbjct: 346 AAGGKPLTAREISHRLEIPIRFVNELLFELAKSNVLSVTEAEGDGERGFQPAVDINALTI 405 Query: 79 VKATE 83 E Sbjct: 406 HYVLE 410 >gi|77454725|ref|YP_345593.1| putative arsenical resistance operon repressor [Rhodococcus erythropolis PR4] gi|229493331|ref|ZP_04387122.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|77019725|dbj|BAE46101.1| putative arsenic resistance operon repressor ArsR [Rhodococcus erythropolis PR4] gi|229319833|gb|EEN85663.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 122 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I++ +S+ + L+ L +AG+++ R Sbjct: 37 LRLLSLVASHEGGEACVCDISDTFDLSQPTISHHLKVLRQAGLLDCER 84 >gi|313618191|gb|EFR90273.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria innocua FSL S4-378] Length = 325 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|16803943|ref|NP_465428.1| hypothetical protein lmo1904 [Listeria monocytogenes EGD-e] gi|47096487|ref|ZP_00234079.1| BirA bifunctional protein [Listeria monocytogenes str. 1/2a F6854] gi|224501297|ref|ZP_03669604.1| hypothetical protein LmonFR_02030 [Listeria monocytogenes FSL R2-561] gi|254831495|ref|ZP_05236150.1| hypothetical protein Lmon1_09078 [Listeria monocytogenes 10403S] gi|254899399|ref|ZP_05259323.1| hypothetical protein LmonJ_06284 [Listeria monocytogenes J0161] gi|254912462|ref|ZP_05262474.1| BirA [Listeria monocytogenes J2818] gi|254936789|ref|ZP_05268486.1| birA [Listeria monocytogenes F6900] gi|255029020|ref|ZP_05300971.1| hypothetical protein LmonL_07411 [Listeria monocytogenes LO28] gi|284802349|ref|YP_003414214.1| hypothetical protein LM5578_2105 [Listeria monocytogenes 08-5578] gi|284995491|ref|YP_003417259.1| hypothetical protein LM5923_2056 [Listeria monocytogenes 08-5923] gi|16411357|emb|CAC99982.1| birA [Listeria monocytogenes EGD-e] gi|47015140|gb|EAL06081.1| BirA bifunctional protein [Listeria monocytogenes str. 1/2a F6854] gi|258609384|gb|EEW21992.1| birA [Listeria monocytogenes F6900] gi|284057911|gb|ADB68852.1| hypothetical protein LM5578_2105 [Listeria monocytogenes 08-5578] gi|284060958|gb|ADB71897.1| hypothetical protein LM5923_2056 [Listeria monocytogenes 08-5923] gi|293590444|gb|EFF98778.1| BirA [Listeria monocytogenes J2818] Length = 325 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|284030004|ref|YP_003379935.1| MarR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809297|gb|ADB31136.1| transcriptional regulator, MarR family [Kribbella flavida DSM 17836] Length = 175 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L + A P R S +A+ + KIL+ L AG +E RG Sbjct: 59 ALRHLAA--GQPMRPSDLAQVMGTGPSNISKILKRLEAAGFIE--RGP 102 >gi|228910038|ref|ZP_04073858.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 200] gi|228922957|ref|ZP_04086251.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836728|gb|EEM82075.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849555|gb|EEM94389.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 200] Length = 163 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|229135027|ref|ZP_04263832.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST196] gi|228648412|gb|EEL04442.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST196] Length = 163 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|229152404|ref|ZP_04280596.1| Transcriptional regulator mntR [Bacillus cereus m1550] gi|228631012|gb|EEK87649.1| Transcriptional regulator mntR [Bacillus cereus m1550] Length = 163 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|255027109|ref|ZP_05299095.1| hypothetical protein LmonocytFSL_13668 [Listeria monocytogenes FSL J2-003] Length = 325 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|254827211|ref|ZP_05231898.1| birA [Listeria monocytogenes FSL N3-165] gi|258599594|gb|EEW12919.1| birA [Listeria monocytogenes FSL N3-165] Length = 325 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|328956642|ref|YP_004374028.1| transcriptional regulatory protein [Carnobacterium sp. 17-4] gi|328672966|gb|AEB29012.1| transcriptional regulatory protein [Carnobacterium sp. 17-4] Length = 300 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 9/56 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPADQITILDV 78 I +IA A +S + K ++ L +G+++T R G+ G + +I+IL V Sbjct: 33 MNIKEIAGAIGLSSAVITKHIKKLEASGLIKTERIPGKSG-------SQKISILKV 81 >gi|311109148|ref|YP_003982001.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763837|gb|ADP19286.1| bacterial regulatory protein, GntR family protein 68 [Achromobacter xylosoxidans A8] Length = 235 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 14/81 (17%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPADQI 73 + S +AE +S + + + L + GIVE +G G L A + Sbjct: 32 GEKLPTESALAEQFGVSRTVIREAVSRLRQDGIVEARQGSGVYVTGHAGNRALRIDAADL 91 Query: 74 T----ILDVV---KATEESFF 87 + +L +V +A E Sbjct: 92 SSLDAVLHIVDLRRALETEIA 112 >gi|289642795|ref|ZP_06474932.1| Helix-turn-helix type 11 domain protein [Frankia symbiont of Datisca glomerata] gi|289507364|gb|EFD28326.1| Helix-turn-helix type 11 domain protein [Frankia symbiont of Datisca glomerata] Length = 386 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +IA+ +S +++ L L +AG+ V RG GG +L Sbjct: 17 GRLTAREIADELEVSVRTVYRDLDSLAEAGVPVVAERGATGGYQL 61 >gi|270291886|ref|ZP_06198101.1| adc operon repressor AdcR [Streptococcus sp. M143] gi|270279414|gb|EFA25256.1| adc operon repressor AdcR [Streptococcus sp. M143] Length = 146 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 7 TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D + +LM ++ S++A +S+ + K ++ LVK G++ET R Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85 >gi|228941364|ref|ZP_04103916.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974296|ref|ZP_04134865.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229013422|ref|ZP_04170559.1| Transcriptional regulator mntR [Bacillus mycoides DSM 2048] gi|229019422|ref|ZP_04176245.1| Transcriptional regulator mntR [Bacillus cereus AH1273] gi|229025666|ref|ZP_04182072.1| Transcriptional regulator mntR [Bacillus cereus AH1272] gi|229061895|ref|ZP_04199224.1| Transcriptional regulator mntR [Bacillus cereus AH603] gi|228717408|gb|EEL69077.1| Transcriptional regulator mntR [Bacillus cereus AH603] gi|228735664|gb|EEL86253.1| Transcriptional regulator mntR [Bacillus cereus AH1272] gi|228741892|gb|EEL92069.1| Transcriptional regulator mntR [Bacillus cereus AH1273] gi|228747834|gb|EEL97700.1| Transcriptional regulator mntR [Bacillus mycoides DSM 2048] gi|228785346|gb|EEM33356.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818290|gb|EEM64363.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 163 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|229071709|ref|ZP_04204925.1| Transcriptional regulator mntR [Bacillus cereus F65185] gi|229081462|ref|ZP_04213962.1| Transcriptional regulator mntR [Bacillus cereus Rock4-2] gi|229180482|ref|ZP_04307824.1| Transcriptional regulator mntR [Bacillus cereus 172560W] gi|229192415|ref|ZP_04319378.1| Transcriptional regulator mntR [Bacillus cereus ATCC 10876] gi|228590992|gb|EEK48848.1| Transcriptional regulator mntR [Bacillus cereus ATCC 10876] gi|228602906|gb|EEK60385.1| Transcriptional regulator mntR [Bacillus cereus 172560W] gi|228701877|gb|EEL54363.1| Transcriptional regulator mntR [Bacillus cereus Rock4-2] gi|228711440|gb|EEL63399.1| Transcriptional regulator mntR [Bacillus cereus F65185] Length = 163 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|218507150|ref|ZP_03505028.1| transcriptional regulator, histidine utilization repressor, GntR family protein [Rhizobium etli Brasil 5] Length = 131 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A +S + + K+L L KAG++E R ++ G + +P Q +L++ Sbjct: 37 DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84 >gi|154247275|ref|YP_001418233.1| regulatory protein GntR HTH [Xanthobacter autotrophicus Py2] gi|154161360|gb|ABS68576.1| regulatory protein GntR HTH [Xanthobacter autotrophicus Py2] Length = 255 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ ++A +S + + L+ L ++ + RG GG Sbjct: 42 DERLPTEEELAAQFGVSRPTVREALKRLAARHLIRSRRGPTGG 84 >gi|328883860|emb|CCA57099.1| Transcriptional regulator, ArsR family [Streptomyces venezuelae ATCC 10712] Length = 359 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D P +Q+A C +S + + L L AG+V R Sbjct: 304 DTPASTTQLAAHCGLSPAGVSQHLIALRNAGLVTAHR 340 >gi|228954488|ref|ZP_04116513.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805145|gb|EEM51739.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 163 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAE+ + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAESLSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|326382434|ref|ZP_08204126.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199164|gb|EGD56346.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 93 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+ A H + I+ A +S+ + L+ L AG++E+ R Sbjct: 12 LRLFSLIASHEGGEACVCDISPAVDVSQPTISHHLKVLKNAGLLESERRAS 62 >gi|312865929|ref|ZP_07726150.1| transcriptional regulator, MarR family [Streptococcus downei F0415] gi|311098333|gb|EFQ56556.1| transcriptional regulator, MarR family [Streptococcus downei F0415] Length = 155 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + +L+ A +SQ+AE IS + +++ LVK G ++ Sbjct: 39 VHLLVLLA--KGERMNLSQLAERRQISRSAVTQMVNRLVKKGYLK 81 >gi|220921050|ref|YP_002496351.1| transcriptional regulator, histidine utilization repressor, GntR family [Methylobacterium nodulans ORS 2060] gi|219945656|gb|ACL56048.1| transcriptional regulator, histidine utilization repressor, GntR family [Methylobacterium nodulans ORS 2060] Length = 686 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 S+++ S + + K+L L +AG++E R RR G + RPA Q +L + Sbjct: 485 SELSALYGCSRMTVNKVLAGLAEAGLIE--RRRRAGSFVARPARQSAVLQI 533 >gi|167564761|ref|ZP_02357677.1| UbiC transcription regulator-associated protein [Burkholderia oklahomensis EO147] gi|167571927|ref|ZP_02364801.1| UbiC transcription regulator-associated protein [Burkholderia oklahomensis C6786] Length = 212 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +S +A ++ + + + L + G+V RGR Sbjct: 8 SVSDLAARYDVNRHTIMRAIAELQQHGLVRVERGRG 43 >gi|110834404|ref|YP_693263.1| ribonuclease BN-like family protein [Alcanivorax borkumensis SK2] gi|110647515|emb|CAL16991.1| Ribonuclease BN-like family protein [Alcanivorax borkumensis SK2] Length = 458 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%) Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 LV A ++ R GG L R I++ +V P + L Sbjct: 362 LVNANLIR--RTDEGGYILSRDLRNISLGQLVAMLPWPAHTQLRVRQQPESLPWEQA--L 417 Query: 108 TSVLRKALNAFFDVLTQYSIECL 130 S + +A L S++ L Sbjct: 418 KSRMDEAREGMMAPLD-ISLDAL 439 >gi|75761454|ref|ZP_00741421.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902721|ref|ZP_04066868.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 4222] gi|74491060|gb|EAO54309.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856908|gb|EEN01421.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 4222] Length = 163 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|116672154|ref|YP_833087.1| hypothetical protein Arth_3612 [Arthrobacter sp. FB24] gi|116612263|gb|ABK04987.1| conserved hypothetical protein [Arthrobacter sp. FB24] Length = 108 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 + A+ D R++ IA+ I+ +IL+ L G + R GRR Sbjct: 28 VLLAVAADPEMRVADIADRVGITPRAALQILKDLESGGYLHRTRVGRR 75 >gi|296130573|ref|YP_003637823.1| CoA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296022388|gb|ADG75624.1| CoA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 231 Score = 37.2 bits (86), Expect = 0.82, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R L A ++A +S L K L L G RG G + Sbjct: 34 LRALQATAAEGAVLTSSDELAARAGVSPAQLRKDLSFLGSYG----RRGV--GYDVAHLR 87 Query: 71 DQITI----LDVVKAT 82 +QIT+ DV + Sbjct: 88 EQITVVLGLADVRRVL 103 >gi|260776890|ref|ZP_05885784.1| 3-methyladenine DNA glycosylase [Vibrio coralliilyticus ATCC BAA-450] gi|260606556|gb|EEX32830.1| 3-methyladenine DNA glycosylase [Vibrio coralliilyticus ATCC BAA-450] Length = 426 Score = 37.2 bits (86), Expect = 0.82, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + ++++AE IS+ +L ++ Q Sbjct: 63 LRALKMIEQGELQTSSLAELAERLGISDRYLRQLFQD 99 >gi|320162166|ref|YP_004175391.1| ArsR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319996020|dbj|BAJ64791.1| ArsR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 116 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L+ A++ + P+ +S +AE I++ + L L G+V + R + V + Sbjct: 26 RILILYALN-EKPSNVSTLAEELGITQSAASRHLNVLRDRGLVISQRDGQSVVNMLADPR 84 Query: 72 QITILDVVKAT 82 I LD+++A Sbjct: 85 VIQALDLLRAV 95 >gi|258512285|ref|YP_003185719.1| transcriptional regulator, DeoR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479011|gb|ACV59330.1| transcriptional regulator, DeoR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 266 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 RVL+ A H Q+AE +SE+ + + ++ L G+VET GG ++ R A Sbjct: 8 RVLLELLAQHG--FASYRQLAERLGVSEITVRRDMKALEAQGLVET---AFGGGQVARAA 62 Query: 71 DQ 72 + Sbjct: 63 RE 64 >gi|229553854|ref|ZP_04442579.1| plasmid replication protein RepR [Lactobacillus rhamnosus LMS2-1] gi|229312784|gb|EEN78757.1| plasmid replication protein RepR [Lactobacillus rhamnosus LMS2-1] Length = 491 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLC 67 ++ + IS L K+L + G+++ V+ GR GG+ L Sbjct: 394 VTTRELRDQLGISSQVLTKVLAYVADYGLLKVVKQYGRHGGLYLT 438 >gi|224500254|ref|ZP_03668603.1| hypothetical protein LmonF1_11484 [Listeria monocytogenes Finland 1988] Length = 325 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 EGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|203284797|ref|YP_002221641.1| RepR protein [Lactobacillus rhamnosus HN001] gi|199631686|gb|ACH91662.1| RepR protein [Lactobacillus rhamnosus HN001] Length = 494 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLC 67 ++ + IS L K+L + G+++ V+ GR GG+ L Sbjct: 397 VTTRELRDQLGISSQVLTKVLAYVADYGLLKVVKQYGRHGGLYLT 441 >gi|220914057|ref|YP_002489366.1| TrmB family transcripitonal regulator [Arthrobacter chlorophenolicus A6] gi|219860935|gb|ACL41277.1| transcriptional regulator, TrmB [Arthrobacter chlorophenolicus A6] Length = 108 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL--CRP 69 VL+ A YP S +A++ +S + L L G+V +V GRR L R Sbjct: 25 VLLALAQAPSYP---SDLADSIGVSRQSMSNHLTCLRGCGLVVSVPDGRRTRYELADARL 81 Query: 70 ADQIT-ILDVVKATEE 84 IT +L VV A + Sbjct: 82 GHAITDLLGVVLAVDP 97 >gi|158313797|ref|YP_001506305.1| helix-turn-helix type 11 domain-containing protein [Frankia sp. EAN1pec] gi|158109202|gb|ABW11399.1| Helix-turn-helix type 11 domain protein [Frankia sp. EAN1pec] Length = 330 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ + L+ + ++A +S + + + L +AG+ + + G Sbjct: 1 MRSSR-----LMALL-LHLQAHGRATAGELAAQFEVSVRTVRRDVAALAEAGVPLWSEPG 54 Query: 60 RRGGVRL 66 GG+RL Sbjct: 55 PHGGIRL 61 >gi|302540256|ref|ZP_07292598.1| LigA protein [Streptomyces hygroscopicus ATCC 53653] gi|302457874|gb|EFL20967.1| LigA protein [Streptomyces himastatinicus ATCC 53653] Length = 371 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 15 MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M H P S++A+ + + + + L+ L AG+VE+ R Sbjct: 300 MELCRHLLGEPITTSELAQRLGLDDTQVSRTLRQLRDAGLVESER 344 >gi|302517433|ref|ZP_07269775.1| DeoR-family protein transcriptional regulator [Streptomyces sp. SPB78] gi|302426328|gb|EFK98143.1| DeoR-family protein transcriptional regulator [Streptomyces sp. SPB78] Length = 322 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 13 VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +L+ + ++A ++ + + ++ L G V ++G GG RL Sbjct: 1 MLVLLGLLQRGRSWSGPELAARLGVTSRTVRRDVERLRALGYPVHALQGVGGGYRLG 57 >gi|290959357|ref|YP_003490539.1| GntR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260648883|emb|CBG71997.1| putative gntR-family transcriptional regulator [Streptomyces scabiei 87.22] Length = 137 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R + D ++ EA I+ + K + L + G+VE RG Sbjct: 17 QIVQQTKQALR--LGLLEPGDKLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 72 >gi|260575231|ref|ZP_05843231.1| transcriptional regulator, Crp/Fnr family [Rhodobacter sp. SW2] gi|259022491|gb|EEW25787.1| transcriptional regulator, Crp/Fnr family [Rhodobacter sp. SW2] Length = 229 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 VL+ A +++ + +A + + + L + G VET RGR VRL PA Sbjct: 163 VLLELAQNDEVHATQADLAARIGTAREVISRRLDSFARRGWVETDRGR---VRLTNPAAL 219 Query: 73 ITILD 77 + + Sbjct: 220 RRLAE 224 >gi|145593895|ref|YP_001158192.1| helix-turn-helix, type 11 domain-containing protein [Salinispora tropica CNB-440] gi|145303232|gb|ABP53814.1| Helix-turn-helix, type 11 domain protein [Salinispora tropica CNB-440] Length = 339 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE +++ + + + L + G VE+ G GG RL Sbjct: 39 TCAELAERMEVTDRTVRRDIARLRELGYGVESDPGPWGGYRLS 81 >gi|90409365|ref|ZP_01217450.1| transcriptional repressor of aga operon [Psychromonas sp. CNPT3] gi|90309531|gb|EAS37731.1| transcriptional repressor of aga operon [Psychromonas sp. CNPT3] Length = 258 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R L+ +H +++ +AE +S + + L L K GIV GG L + Sbjct: 8 RELILFHLHQKGSVQVADLAEMFSVSTVTIRNDLGALEKKGIVT---RAYGGAYLNKA-- 62 Query: 72 QITILD 77 I++ + Sbjct: 63 NISLTE 68 >gi|29832243|ref|NP_826877.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29609361|dbj|BAC73412.1| putative transcriptional regulator with cyclic nucleotide-binding domain [Streptomyces avermitilis MA-4680] Length = 234 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 19/82 (23%) Query: 7 TDYGIRVLMYCAIHNDYPNRI----------SQIAEACCISELFLFKILQPLVKAGIVET 56 T RVL+ A P ++AE SE + ++L+ L + G+VET Sbjct: 127 TRVA-RVLLELARAYGRPCATGVSIGVSLTQPELAELVGASEPSVHRVLRSLRERGVVET 185 Query: 57 VRGRRGGVR--LCRPADQITIL 76 G R L R ++TI Sbjct: 186 ------GYRRVLVRDLPELTIA 201 >gi|21222462|ref|NP_628241.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|256786466|ref|ZP_05524897.1| transcriptional regulator [Streptomyces lividans TK24] gi|289770356|ref|ZP_06529734.1| transcriptional regulator [Streptomyces lividans TK24] gi|13122152|emb|CAC32330.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289700555|gb|EFD67984.1| transcriptional regulator [Streptomyces lividans TK24] Length = 111 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60 A + P S++A A +S + K L+ L + G+VE+ RGR Sbjct: 22 LARLGEAPVSASELARALPVSRQAIVKHLEVLREVGLVESERRGR 66 >gi|329851788|ref|ZP_08266469.1| bacterial regulatory protein, arsR family protein [Asticcacaulis biprosthecum C19] gi|328839637|gb|EGF89210.1| bacterial regulatory protein, arsR family protein [Asticcacaulis biprosthecum C19] Length = 114 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +++L Y + +IAE +++ L K L L AG++ V+ Sbjct: 16 LKILAYL---SKATLTAGEIAERFDMAKPSLSKHLSILENAGLITGVK 60 >gi|71153536|sp|Q9R9U0|SRPS_PSEPU RecName: Full=HTH-type transcriptional regulator srpS; AltName: Full=Solvent efflux pump srpABC operon corepressor gi|6560605|gb|AAF16681.1|AF061937_1 efflux pump regulator SrpS [Pseudomonas putida] Length = 259 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ H + ++ IA+ + + +I+ L + +VE + G GG RL Sbjct: 23 IMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGFRLG 75 >gi|46908137|ref|YP_014526.1| birA bifunctional protein [Listeria monocytogenes serotype 4b str. F2365] gi|47094229|ref|ZP_00231941.1| BirA bifunctional protein [Listeria monocytogenes str. 4b H7858] gi|226224508|ref|YP_002758615.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Listeria monocytogenes Clip81459] gi|254825601|ref|ZP_05230602.1| birA [Listeria monocytogenes FSL J1-194] gi|254852808|ref|ZP_05242156.1| birA [Listeria monocytogenes FSL R2-503] gi|254931925|ref|ZP_05265284.1| birA [Listeria monocytogenes HPB2262] gi|255520918|ref|ZP_05388155.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Listeria monocytogenes FSL J1-175] gi|300763786|ref|ZP_07073783.1| BirA bifunctional protein [Listeria monocytogenes FSL N1-017] gi|46881407|gb|AAT04703.1| birA bifunctional protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017401|gb|EAL08222.1| BirA bifunctional protein [Listeria monocytogenes str. 4b H7858] gi|225876970|emb|CAS05679.1| Putative transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606135|gb|EEW18743.1| birA [Listeria monocytogenes FSL R2-503] gi|293583477|gb|EFF95509.1| birA [Listeria monocytogenes HPB2262] gi|293594844|gb|EFG02605.1| birA [Listeria monocytogenes FSL J1-194] gi|300515522|gb|EFK42572.1| BirA bifunctional protein [Listeria monocytogenes FSL N1-017] gi|328466254|gb|EGF37411.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Listeria monocytogenes 1816] gi|332312345|gb|EGJ25440.1| BirA bifunctional protein [Listeria monocytogenes str. Scott A] Length = 325 Score = 37.2 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|307324376|ref|ZP_07603584.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] gi|306890107|gb|EFN21085.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] Length = 242 Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 Y + + P ++ +A IS + + LQ L++ G+ V T GR GG + Sbjct: 8 YAL--VEELRAAAPRPLTVAALAARFEISTRTVQRDLQALMQTGVPVRTTPGRGGGWSIA 65 >gi|312195155|ref|YP_004015216.1| IclR family transcriptional regulator [Frankia sp. EuI1c] gi|311226491|gb|ADP79346.1| transcriptional regulator, IclR family [Frankia sp. EuI1c] Length = 255 Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + D + VL A + ++A + + ++L L G+VE RGR G Sbjct: 10 QSVDRAVTVLEILARGGEAGVT--EVAAELGVHKSTASRLLGALEHRGLVEQPRGR-GKY 66 Query: 65 RLC 67 RL Sbjct: 67 RLG 69 >gi|257062956|ref|YP_003142628.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790609|gb|ACV21279.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 156 Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + +A I+ + K L G +E+ RGR + D+ Sbjct: 32 RPGEQLPTVRALASEISINYNTVNKAYLALKSEGYIESTRGRGA-----------FVRDL 80 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCG-LTSVLRKALNAFFDVLTQYSIEC-LVRNRSS 136 A E + + DC V +C L L A + Q ++ LV +S Sbjct: 81 --AVEVDEEFSHEVDTILGDC--VSACRDLGLTLDDVSRAMDAKIQQIKLDEGLVEPDAS 136 >gi|254992072|ref|ZP_05274262.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes FSL J2-064] Length = 325 Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|213645961|ref|ZP_03376014.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 176 Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74 >gi|124485464|ref|YP_001030080.1| hypothetical protein Mlab_0640 [Methanocorpusculum labreanum Z] gi|124363005|gb|ABN06813.1| putative signal transduction protein with CBS domains [Methanocorpusculum labreanum Z] Length = 292 Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LCRP 69 + L+ +P + IA+ + + + L G+V+ + G +GG + R Sbjct: 11 LITLISLYHQYSHPIKSEVIADIIRRNPGTVRNQMLALKVLGLVDGIPGPKGGYQPTARA 70 Query: 70 ADQITI 75 ++ I Sbjct: 71 YSELNI 76 >gi|325168692|ref|YP_004280482.1| ArsR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064415|gb|ADY68104.1| ArsR family transcriptional regulator [Agrobacterium sp. H13-3] Length = 91 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L+ D + ++A +S+ L + L L A +V+T R Sbjct: 10 LRILV------DAEIPVGELAHRVGLSQSALSQHLAKLRNANVVQTRR 51 >gi|313608007|gb|EFR84107.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes FSL F2-208] Length = 325 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|149377212|ref|ZP_01894960.1| Transcriptional regulator, DeoR family protein [Marinobacter algicola DG893] gi|149358511|gb|EDM46985.1| Transcriptional regulator, DeoR family protein [Marinobacter algicola DG893] Length = 318 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 RVL + +++AE + + + + L + GI V T +GR GG RL Sbjct: 7 RVLTVLELLQTHGQIGGAELAERLGVDRRTIRRYITVLEELGIPVMTEQGRYGGYRL 63 >gi|294630704|ref|ZP_06709264.1| DeoR-family transcriptional regulator [Streptomyces sp. e14] gi|292834037|gb|EFF92386.1| DeoR-family transcriptional regulator [Streptomyces sp. e14] Length = 339 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++AE ++E + + + L + G V++ G GG RL Sbjct: 28 TCAELAERTAVTERTVRRDVARLRELGYVVDSEPGPWGGYRL 69 >gi|255691437|ref|ZP_05415112.1| FucR protein [Bacteroides finegoldii DSM 17565] gi|260622824|gb|EEX45695.1| FucR protein [Bacteroides finegoldii DSM 17565] Length = 331 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 LEGDSLPSINQLSAHYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|167996922|gb|ACA14313.1| transcriptional regulator [uncultured bacterium] Length = 120 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 22/103 (21%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L++ T ++ +IA + + L L +AG V + R Sbjct: 13 LSQDTR--LKAFKLLVSQEPDGLPAGEIARQLSVPHNTMSAHLSVLARAGWVVSKR---- 66 Query: 63 GVRLCRPADQITILDVVKA----TEE--SFFVAECFASHKIDC 99 + QI + +A E F + +C A H C Sbjct: 67 ------QSRQI----IYRASLSHMEAVVQFLLQDCCAGHPELC 99 >gi|164686859|ref|ZP_02210887.1| hypothetical protein CLOBAR_00455 [Clostridium bartlettii DSM 16795] gi|164604249|gb|EDQ97714.1| hypothetical protein CLOBAR_00455 [Clostridium bartlettii DSM 16795] Length = 298 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++ Y H + S++AE +S +++ + L AGI + +G+ GG+ L Sbjct: 7 FKIVYYLLEH--EKSTASELAEKFEVSVRTIYRDIDALSSAGIPICATQGKGGGIYL 61 >gi|33867191|ref|NP_898749.1| ArsR family transcriptional regulator [Rhodococcus erythropolis] gi|33669025|gb|AAP74019.1| putative ArsR-family regulator [Rhodococcus erythropolis] Length = 141 Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I++ +S+ + L+ L +AG+++ R Sbjct: 55 LRLLSLVASHEGGEACVCDISDTFDLSQPTISHHLKVLRQAGLLDCER 102 >gi|295687580|ref|YP_003591273.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295429483|gb|ADG08655.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis ATCC 21756] Length = 140 Score = 36.9 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 18 AIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 A D +++A S + + ++ L KAG++ G GG L +PA+ I Sbjct: 22 AFSADRAVASAELA----ASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAEAI 77 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131 T+ V+KA + CP+ + S + A A L + ++ L+ Sbjct: 78 TLDMVLKAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRSAIEAADAAAAARLGEITVADLL 136 Query: 132 RN 133 + Sbjct: 137 AS 138 >gi|239980488|ref|ZP_04703012.1| GntR family transcriptional regulator [Streptomyces albus J1074] gi|291452348|ref|ZP_06591738.1| GntR-family transcriptional regulator [Streptomyces albus J1074] gi|291355297|gb|EFE82199.1| GntR-family transcriptional regulator [Streptomyces albus J1074] Length = 129 Score = 36.9 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R + D ++ EA ++ + K + L + G+VE RG Sbjct: 17 QIVQQTRQALR--LGLLEPGDKLPTAREVVEATAVNPNTVLKAYRELEREGLVEARRG 72 >gi|94310727|ref|YP_583937.1| GntR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354579|gb|ABF08668.1| transcriptional regulator, GntR-family [Cupriavidus metallidurans CH34] Length = 232 Score = 36.9 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71 Q+AE +S + ++ + L G+VE+ +G G RL AD Sbjct: 28 GARLPTGKQLAERYGVSAAVIREVTEHLRSLGMVESRQGLGSTVRSRVSDSGFRLSGGAD 87 Query: 72 QITILDVVK 80 + D+ + Sbjct: 88 NTDLADIFE 96 >gi|253581551|ref|ZP_04858776.1| ribonuclease BN [Fusobacterium varium ATCC 27725] gi|251836621|gb|EES65156.1| ribonuclease BN [Fusobacterium varium ATCC 27725] Length = 419 Score = 36.9 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVRL 66 IR L+ ++N P + ++AE IS + IL + G+V V + G + Sbjct: 305 IRELIRRYLNNLSPVTVKELAERSNISYDVILHILNIFEENGLVAKVINVKNDNEEGFTI 364 Query: 67 CRPADQITILDVVKATEES 85 + DQI + E S Sbjct: 365 LQNIDQINFKKIFNILENS 383 >gi|299821209|ref|ZP_07053097.1| GntR family transcriptional regulator [Listeria grayi DSM 20601] gi|299816874|gb|EFI84110.1| GntR family transcriptional regulator [Listeria grayi DSM 20601] Length = 122 Score = 36.9 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I ++A I+ + K Q L + I+ TV+GR Sbjct: 32 GDRVPSIRELAALLGINPNTVSKAYQELERLEILSTVKGRG 72 >gi|217963944|ref|YP_002349622.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes HCC23] gi|217333214|gb|ACK39008.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes HCC23] gi|307571486|emb|CAR84665.1| bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase [Listeria monocytogenes L99] Length = 325 Score = 36.9 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|33599846|ref|NP_887406.1| GntR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33567443|emb|CAE31356.1| putative GntR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 246 Score = 36.9 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 19/113 (16%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRP------ADQI 73 ++ E +S + L+ L G++ET +GR GG L RP A I Sbjct: 46 RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARGI 105 Query: 74 TILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 ++ ++++ A E + D L T +L++AL L Sbjct: 106 SLQEMIEARVAIEPTIAELAALRRTPED--LQALIQATDLLQEALPRVEQFLD 156 >gi|304570820|ref|YP_003858729.1| hypothetical protein CCNA_04004 [Caulobacter crescentus NA1000] Length = 319 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + AI P + ++AE +++ + + L PL + G+VE R Sbjct: 47 LLMAIRMHEPISVGELAERLQLAQPTVTRALGPLERNGLVEARRAPG 93 >gi|293364448|ref|ZP_06611174.1| adc operon repressor AdcR [Streptococcus oralis ATCC 35037] gi|307702588|ref|ZP_07639540.1| putative transcriptional repressor [Streptococcus oralis ATCC 35037] gi|322375152|ref|ZP_08049666.1| adc operon repressor AdcR [Streptococcus sp. C300] gi|291317294|gb|EFE57721.1| adc operon repressor AdcR [Streptococcus oralis ATCC 35037] gi|307623704|gb|EFO02689.1| putative transcriptional repressor [Streptococcus oralis ATCC 35037] gi|321280652|gb|EFX57691.1| adc operon repressor AdcR [Streptococcus sp. C300] Length = 146 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 7 TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D + +LM ++ S++A +S+ + K ++ LVK G++ET R Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85 >gi|224283664|ref|ZP_03646986.1| transcription regulator ArsR [Bifidobacterium bifidum NCIMB 41171] gi|313140820|ref|ZP_07803013.1| ArsR-family transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133330|gb|EFR50947.1| ArsR-family transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] Length = 201 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +R+L + + P + QIAE S + L+ L KAG V G Sbjct: 37 LRILTVMS--DTEPVTVGQIAEQLGESAGTVSYHLKQLEKAGFVTQTPSPDG 86 >gi|86751001|ref|YP_487497.1| MarR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574029|gb|ABD08586.1| transcriptional regulator, MarR family [Rhodopseudomonas palustris HaA2] Length = 158 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 RVLM P +SQIA+ ++ + KI+ + G+V T Sbjct: 55 RVLMLLV--EGRPLTVSQIADEAVVNISTMAKIINRMTDDGLVTTR 98 >gi|65321590|ref|ZP_00394549.1| COG1321: Mn-dependent transcriptional regulator [Bacillus anthracis str. A2012] gi|118479392|ref|YP_896543.1| manganese transport transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|228916839|ref|ZP_04080403.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929248|ref|ZP_04092275.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935528|ref|ZP_04098345.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947919|ref|ZP_04110206.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093261|ref|ZP_04224379.1| Transcriptional regulator mntR [Bacillus cereus Rock3-42] gi|229123722|ref|ZP_04252917.1| Transcriptional regulator mntR [Bacillus cereus 95/8201] gi|229140937|ref|ZP_04269481.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST26] gi|229198331|ref|ZP_04325038.1| Transcriptional regulator mntR [Bacillus cereus m1293] gi|118418617|gb|ABK87036.1| iron-dependent repressor [Bacillus thuringiensis str. Al Hakam] gi|228585210|gb|EEK43321.1| Transcriptional regulator mntR [Bacillus cereus m1293] gi|228642513|gb|EEK98800.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST26] gi|228659857|gb|EEL15502.1| Transcriptional regulator mntR [Bacillus cereus 95/8201] gi|228690235|gb|EEL44029.1| Transcriptional regulator mntR [Bacillus cereus Rock3-42] gi|228811906|gb|EEM58240.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824142|gb|EEM69957.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830538|gb|EEM76148.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842809|gb|EEM87893.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 163 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|299132791|ref|ZP_07025986.1| putative transcriptional regulator, ArsR family [Afipia sp. 1NLS2] gi|298592928|gb|EFI53128.1| putative transcriptional regulator, ArsR family [Afipia sp. 1NLS2] Length = 123 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 14/99 (14%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L++ T + V H +IA + + L L +AG++E Sbjct: 13 LSQPTR--LEVFRLLVKHEPDGLPAGEIARFMGVPHNTMSTHLAILTRAGLIEA------ 64 Query: 63 GVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDC 99 R + I ++A F V +C C Sbjct: 65 ----ARQSRSIVYRAQIEAVRGLAGFLVKDCCGGRPELC 99 >gi|297156072|gb|ADI05784.1| putative IclR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 263 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + +L A D P R+ ++A+ + ++ +LQ L+ G V T Sbjct: 17 VELLELLAARGDRPARLRELADELGVPRSSMYALLQTLIDRGWVRT 62 >gi|294786058|ref|ZP_06751343.1| transcriptional regulator, GntR family [Fusobacterium sp. 3_1_27] gi|294486280|gb|EFG33645.1| transcriptional regulator, GntR family [Fusobacterium sp. 3_1_27] Length = 474 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K++Q L + G + +++G+ Sbjct: 32 ENDKFYSVRQISIKYEVNSNTVLKVVQMLEEEGYLYSIKGKG 73 >gi|302540999|ref|ZP_07293341.1| IclR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458617|gb|EFL21710.1| IclR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 305 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 10 GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVR 65 + ++M+ A +P ++ +AE +S+ + ++L PL + +V + GR + Sbjct: 55 ALSIVMFLAEDRGHPRGATLTDLAEGLGLSKSTILRLLAPLREVRLVDQDAENGR---YQ 111 Query: 66 LCRPADQITILDVV 79 L + V Sbjct: 112 LG--PQNAFLGQVY 123 >gi|256846236|ref|ZP_05551693.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|256718005|gb|EEU31561.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] Length = 474 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K++Q L + G + +++G+ Sbjct: 32 ENDKFYSVRQISIKYEVNSNTVLKVVQMLEEEGYLYSIKGKG 73 >gi|255320151|ref|ZP_05361337.1| transcriptional regulator, IclR family [Acinetobacter radioresistens SK82] gi|262379249|ref|ZP_06072405.1| predicted protein [Acinetobacter radioresistens SH164] gi|255302769|gb|EET82000.1| transcriptional regulator, IclR family [Acinetobacter radioresistens SK82] gi|262298706|gb|EEY86619.1| predicted protein [Acinetobacter radioresistens SH164] Length = 213 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 GI L A H ++Q+AE I+ ++I + L G ++T Sbjct: 10 GIHALELIARHQGQ-LTVAQLAELLEINRTIAYRITRTLTHLGYIKT 55 >gi|228987393|ref|ZP_04147513.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157801|ref|ZP_04285876.1| Transcriptional regulator mntR [Bacillus cereus ATCC 4342] gi|228625758|gb|EEK82510.1| Transcriptional regulator mntR [Bacillus cereus ATCC 4342] gi|228772365|gb|EEM20811.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 163 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|289580804|ref|YP_003479270.1| hypothetical protein Nmag_1124 [Natrialba magadii ATCC 43099] gi|289530357|gb|ADD04708.1| conserved hypothetical protein [Natrialba magadii ATCC 43099] Length = 75 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 15 MYCAIHNDYPNRISQIAEACCISELF---LFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + A+ + P ++++A+ S + + + L +AG + RG G RL R Sbjct: 11 ILAALDSAQPATVAELADVLE-SRPHPMTVERRCRALQQAGYLN--RGPGGAYRLTRA 65 >gi|254976710|ref|ZP_05273182.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255094094|ref|ZP_05323572.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315845|ref|ZP_05357428.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255518506|ref|ZP_05386182.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255651625|ref|ZP_05398527.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260684668|ref|YP_003215953.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260688326|ref|YP_003219460.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306521428|ref|ZP_07407775.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260210831|emb|CBA65891.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260214343|emb|CBE06709.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 320 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++D QI+E I+ +++ + L +G+ + + G GG L Sbjct: 14 LNSDKKVTAKQISEKLEINIRTVYRHIDALSASGVPIISDTGHNGGYTL 62 >gi|16801084|ref|NP_471352.1| hypothetical protein lin2018 [Listeria innocua Clip11262] gi|16414519|emb|CAC97248.1| birA [Listeria innocua Clip11262] Length = 325 Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|315185685|gb|EFU19452.1| transcriptional regulator, ArsR family [Spirochaeta thermophila DSM 6578] Length = 313 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCR-PADQITI 75 ++QIAE + + + + L KAG++ET V G++G +LCR ++I + Sbjct: 37 ETLNVNQIAERLKLPQSTVATNIAILEKAGLIETEIVNGKKGNQKLCRTRYEEIMV 92 >gi|307719148|ref|YP_003874680.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306532873|gb|ADN02407.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 313 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCR-PADQITI 75 ++QIAE + + + + L KAG++ET V G++G +LCR ++I + Sbjct: 37 ETLNVNQIAERLKLPQSTVATNIAILEKAGLIETEIVNGKKGNQKLCRTRYEEIMV 92 >gi|281355905|ref|ZP_06242398.1| transcriptional regulator, GntR family with LacI sensor [Victivallis vadensis ATCC BAA-548] gi|281317274|gb|EFB01295.1| transcriptional regulator, GntR family with LacI sensor [Victivallis vadensis ATCC BAA-548] Length = 371 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE +S + K L L G + VRGR Sbjct: 34 ELAERFGVSRQTVLKALDLLKNEGFLTGVRGRG 66 >gi|302541391|ref|ZP_07293733.1| IclR-family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302459009|gb|EFL22102.1| IclR-family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 264 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 +++L A D P R+ ++AE + ++ +LQ L+ G V T Sbjct: 17 VQLLEVLAARGDQPARLRELAEELDVPRSSMYALLQTLIDRGWVRT 62 >gi|225619115|ref|YP_002720341.1| ribonuclease BN [Brachyspira hyodysenteriae WA1] gi|225213934|gb|ACN82668.1| Ribonuclease BN, Ribonuclease BN-like family [Brachyspira hyodysenteriae WA1] Length = 552 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP 69 + ++ Y I + ++A+ + + +I +PL K+ V + G L P Sbjct: 434 MHIISYRFIKRKKAITMYELAKELRTAPTIITEISEPLEKSMYVIKISNGPNISYSLGCP 493 Query: 70 ADQITILDVVKAT--EESF 86 + ITI DV+ + E F Sbjct: 494 PESITIGDVLYSLRMEGGF 512 >gi|168186280|ref|ZP_02620915.1| HTH domain family [Clostridium botulinum C str. Eklund] gi|169295800|gb|EDS77933.1| HTH domain family [Clostridium botulinum C str. Eklund] Length = 157 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66 I++L+ + +I +IAE ++E + L +A + + G+ GG L Sbjct: 8 IKMLILL--KSRGKMKIKEIAEILEVNERSIRMYKNELEQAQIYINSTSGKYGGYEL 62 >gi|115378527|ref|ZP_01465683.1| transcriptional regulator MarR family [Stigmatella aurantiaca DW4/3-1] gi|310822379|ref|YP_003954737.1| MarR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115364449|gb|EAU63528.1| transcriptional regulator MarR family [Stigmatella aurantiaca DW4/3-1] gi|309395451|gb|ADO72910.1| Transcriptional regulator, MarR family [Stigmatella aurantiaca DW4/3-1] Length = 160 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 21/113 (18%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--ITI----L 76 P I ++A +S + + + + + G+V G + A + IT+ Sbjct: 47 EPATIRELATRAGLSHSAMSQTIAQMTRHGLVTAKPG--------QDARERIITLTPKAA 98 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 ++ A E + V E A+ +D L L VLR+A++A L + S Sbjct: 99 AMLTALERQWRVTE-AAARSLDTDLGM--PLADVLRQAIDA----LDRRSFGD 144 >gi|110679546|ref|YP_682553.1| GntR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109455662|gb|ABG31867.1| transcriptional regulator, GntR family, putative [Roseobacter denitrificans OCh 114] Length = 252 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQITILDVVKA 81 +++AE +S + + L+ L ++ T RG GG + R QIT ++ + Sbjct: 38 AELAEHFDVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRISFQDAYPQQITTSTLLLS 97 Query: 82 TEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAF 118 F C A + ++ C PL L Sbjct: 98 MNAVSFSTACEARYALERACSPLSAERRTADHLATMRAEI 137 >gi|33591443|ref|NP_879087.1| GntR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33571085|emb|CAE40577.1| putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332380844|gb|AEE65691.1| GntR family transcriptional regulator [Bordetella pertussis CS] Length = 246 Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 19/113 (16%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRP------ADQI 73 ++ E +S + L+ L G++ET +GR GG L RP A I Sbjct: 46 RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARGI 105 Query: 74 TILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 ++ ++++ A E + D L T +L++AL L Sbjct: 106 SLQEMIEARVAIEPTIAELAALRRTPED--LQALIQATDLLQEALPHVEQFLD 156 >gi|229075913|ref|ZP_04208889.1| Transcriptional regulator mntR [Bacillus cereus Rock4-18] gi|228707228|gb|EEL59425.1| Transcriptional regulator mntR [Bacillus cereus Rock4-18] Length = 163 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|229098676|ref|ZP_04229616.1| Transcriptional regulator mntR [Bacillus cereus Rock3-29] gi|229104833|ref|ZP_04235493.1| Transcriptional regulator mntR [Bacillus cereus Rock3-28] gi|229117701|ref|ZP_04247071.1| Transcriptional regulator mntR [Bacillus cereus Rock1-3] gi|228665793|gb|EEL21265.1| Transcriptional regulator mntR [Bacillus cereus Rock1-3] gi|228678550|gb|EEL32767.1| Transcriptional regulator mntR [Bacillus cereus Rock3-28] gi|228684755|gb|EEL38693.1| Transcriptional regulator mntR [Bacillus cereus Rock3-29] Length = 163 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|229186446|ref|ZP_04313610.1| Transcriptional regulator mntR [Bacillus cereus BGSC 6E1] gi|228597073|gb|EEK54729.1| Transcriptional regulator mntR [Bacillus cereus BGSC 6E1] Length = 163 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|281357329|ref|ZP_06243818.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC BAA-548] gi|281316360|gb|EFB00385.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC BAA-548] Length = 302 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R+L Y D P I ++AE +S+ L ++ + Sbjct: 200 RILRYLEARLDQPVSIGELAEEFRLSQATLRRLFRK 235 >gi|126668457|ref|ZP_01739413.1| hypothetical protein MELB17_13277 [Marinobacter sp. ELB17] gi|126627074|gb|EAZ97715.1| hypothetical protein MELB17_13277 [Marinobacter sp. ELB17] Length = 116 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 28/118 (23%) Query: 3 LTKRTDY-GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ T R+L+ H ++A + + L L +A +V + R Sbjct: 13 LSQETRLEAFRLLV---RHEPEGLPAGEVARQLGVPHNTMSAHLSVLARAELVLSQR--- 66 Query: 62 GGVRLCRPADQITILDVVKA----TEES--FFVAECFASHKIDC-PLVGS---CGLTS 109 + I + +A +E+ F V +C A H C PL S C S Sbjct: 67 -------QSRSI----IYRANLNCVQETIKFLVNDCCAGHPQVCEPLTSSLIACSTQS 113 >gi|33867148|ref|NP_898706.1| ArsR family transcriptional regulator [Rhodococcus erythropolis] gi|33668982|gb|AAP73976.1| putative ArsR-family regulator [Rhodococcus erythropolis] Length = 142 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 18/107 (16%) Query: 3 LTKRTDYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV- 57 L++ Y + R + ++ + P S +A+ +S L L L G+V V Sbjct: 43 LSRFG-YALSDSTRTQVLLSLR-ETPGYPSDLADQIGVSRQILSNHLACLRGCGLVVAVP 100 Query: 58 RGRRGGVRLCRPADQI--TIL---DVVKATEESFFVAECFASHKIDC 99 GRR L P +I T+ D+V A + + C S C Sbjct: 101 EGRRTRYELADP--RIGDTLGQLMDLVLAVDPTL----CPKSDAEGC 141 >gi|16127379|ref|NP_421943.1| MarR family transcriptional regulator [Caulobacter crescentus CB15] gi|13424817|gb|AAK25111.1| transcriptional regulator, MarR family [Caulobacter crescentus CB15] Length = 317 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + AI P + ++AE +++ + + L PL + G+VE R Sbjct: 45 LLMAIRMHEPISVGELAERLQLAQPTVTRALGPLERNGLVEARRAPG 91 >gi|323359279|ref|YP_004225675.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275650|dbj|BAJ75795.1| transcriptional regulator [Microbacterium testaceum StLB037] Length = 257 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 20/82 (24%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG------- 59 D +R+L A P IA I + +L L + G V + G Sbjct: 12 ADQTLRILSLLARQPG-PVAAQTIATTLGIPRSSTYHLLATLEQHGYVVHLPGDRRWGLG 70 Query: 60 -----RRGGV-------RLCRP 69 GG RL RP Sbjct: 71 TAAFELGGGYARQQPLARLGRP 92 >gi|319951526|ref|ZP_08025331.1| PaaX family transcriptional regulator [Dietzia cinnamea P4] gi|319434823|gb|EFV90138.1| PaaX family transcriptional regulator [Dietzia cinnamea P4] Length = 103 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--- 67 VL+ A R+ +A+A I+E +I+ L +AG +E VR GRR L Sbjct: 15 HVLLCIAQDPG--MRLRDVADAVGITERAAQRIVAELEQAGYLERVRDGRRNRYHLNQEL 72 Query: 68 --RPA--DQITILDVVKAT 82 R + +++ Sbjct: 73 PLRHPLERDHAVGEILSVL 91 >gi|293552991|ref|ZP_06673637.1| RepE [Enterococcus faecium E1039] gi|291602846|gb|EFF33052.1| RepE [Enterococcus faecium E1039] Length = 449 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 329 MAYISEKSDVYKPYLATTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 388 Query: 67 C 67 Sbjct: 389 A 389 >gi|260599201|ref|YP_003211772.1| hypothetical protein CTU_34090 [Cronobacter turicensis z3032] gi|260218378|emb|CBA33431.1| unknown protein [Cronobacter turicensis z3032] Length = 219 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 D N I +S+ ++ K+ L K G ++ RGR Sbjct: 168 ERDEINACDFIRGKTNLSQSYILKVFSDLRKGGYIDISRGR 208 >gi|257885877|ref|ZP_05665530.1| replication protein E [Enterococcus faecium 1,231,501] gi|257821733|gb|EEV48863.1| replication protein E [Enterococcus faecium 1,231,501] Length = 449 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 329 MAYISEKSDVYKPYLATTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 388 Query: 67 C 67 Sbjct: 389 A 389 >gi|302531666|ref|ZP_07284008.1| transcriptional regulator [Streptomyces sp. AA4] gi|302440561|gb|EFL12377.1| transcriptional regulator [Streptomyces sp. AA4] Length = 320 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE +S + ++ L G V RG GG RL Sbjct: 22 TGAELAERLSVSARTIRNDVERLRTLGYPVHGSRGAVGGYRLG 64 >gi|290894258|ref|ZP_06557226.1| birA protein [Listeria monocytogenes FSL J2-071] gi|290556197|gb|EFD89743.1| birA protein [Listeria monocytogenes FSL J2-071] Length = 325 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|229031851|ref|ZP_04187839.1| Transcriptional regulator mntR [Bacillus cereus AH1271] gi|229163151|ref|ZP_04291106.1| Transcriptional regulator mntR [Bacillus cereus R309803] gi|228620214|gb|EEK77085.1| Transcriptional regulator mntR [Bacillus cereus R309803] gi|228729469|gb|EEL80458.1| Transcriptional regulator mntR [Bacillus cereus AH1271] Length = 163 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|288551488|ref|YP_003422542.1| hypothetical protein pSSVi_p2 [Sulfolobus solfataricus P2] gi|77176919|gb|ABA64555.1| hypothetical protein [Sulfolobus solfataricus P2] Length = 735 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 22/38 (57%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 A+ +D R +IA+ +S+ + +L+ L + G++E Sbjct: 499 ALPDDGSLRSQEIADRLRVSKQYAINVLKNLERKGVIE 536 >gi|33595462|ref|NP_883105.1| GntR family transcriptional regulator [Bordetella parapertussis 12822] gi|33565540|emb|CAE40181.1| putative GntR-family transcriptional regulator [Bordetella parapertussis] Length = 261 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 19/113 (16%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRP------ADQI 73 ++ E +S + L+ L G++ET +GR GG L RP A I Sbjct: 61 RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARGI 120 Query: 74 TILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 ++ ++++ A E + D L T +L++AL L Sbjct: 121 SLQEMIEARVAIEPTIAELAALRRTPED--LQALIQATDLLQEALPRVEQFLD 171 >gi|328881894|emb|CCA55133.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae ATCC 10712] Length = 319 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + + +++A +SE + + L +AG+ V RGR GG RL Sbjct: 9 LVLLLQSRPSMTAAELAAELEVSERTITRDALALSEAGVPVYADRGRGGGYRL 61 >gi|295400047|ref|ZP_06810027.1| transcriptional regulator, IclR family [Geobacillus thermoglucosidasius C56-YS93] gi|312110703|ref|YP_003989019.1| IclR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294977826|gb|EFG53424.1| transcriptional regulator, IclR family [Geobacillus thermoglucosidasius C56-YS93] gi|311215804|gb|ADP74408.1| transcriptional regulator, IclR family [Geobacillus sp. Y4.1MC1] Length = 261 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + + + +++IA+ I++ +++IL LV+ G VE Sbjct: 13 ALHI-IDIVSSKKEGLGVTEIAKQMDINKSSVYRILSTLVQHGYVE 57 >gi|296131327|ref|YP_003638577.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM 20109] gi|296023142|gb|ADG76378.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM 20109] Length = 164 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 DY +VL + ++ D R+ +A ++ L +I+ L G V Sbjct: 43 ADY--QVLAWLSMAPDRTRRMRDLAARADVTLSHLSRIVARLEDRGWVR 89 >gi|213022044|ref|ZP_03336491.1| putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 144 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +IA + +S + + + L+ AGI+ + RG Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74 >gi|156932662|ref|YP_001436578.1| hypothetical protein ESA_00446 [Cronobacter sakazakii ATCC BAA-894] gi|156530916|gb|ABU75742.1| hypothetical protein ESA_00446 [Cronobacter sakazakii ATCC BAA-894] Length = 219 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 13 VLMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ A N+ N I +S+ ++ K+ L K ++ RGR Sbjct: 157 CLIELAAKNEQEREEINACDFIRGKTNLSQSYILKVFSDLRKGDYIDISRGR 208 >gi|116873339|ref|YP_850120.1| bifunctional protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742217|emb|CAK21341.1| bifunctional protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 325 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|119720465|ref|YP_920960.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5] gi|119525585|gb|ABL78957.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5] Length = 233 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + Y I+ Y A+ +S++A+ IS + +L L G++ +V GR Sbjct: 22 FSRYEIKA--YLALLIRGVATVSEVADLSGISYTKAYDVLSSLENKGLLASVPGR 74 >gi|88602916|ref|YP_503094.1| ArsR family transcriptional regulator [Methanospirillum hungatei JF-1] gi|88188378|gb|ABD41375.1| transcriptional regulator, ArsR family [Methanospirillum hungatei JF-1] Length = 297 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++++ +S++A IS+ + + L+ L GIV++ R Sbjct: 33 LKIIYLLTCDTTGTLGVSELASRLGISQPAVSQHLKTLKSEGIVDSRR 80 >gi|94309778|ref|YP_582988.1| GntR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353630|gb|ABF07719.1| Transcriptional regulator (GntR family) [Cupriavidus metallidurans CH34] Length = 272 Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 12/74 (16%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ-------- 72 D S+I +S + + L L +G+VET G G L RPA+ Sbjct: 62 GDKLPTESEIMARLGVSRTVVREALSRLQASGMVETRHGI-GTFVLNRPAETQSPFRIDP 120 Query: 73 ---ITILDVVKATE 83 +T +DV+ E Sbjct: 121 SAIVTAMDVLAMLE 134 >gi|320536828|ref|ZP_08036824.1| transcriptional regulator, GntR family [Treponema phagedenis F0421] gi|320146337|gb|EFW37957.1| transcriptional regulator, GntR family [Treponema phagedenis F0421] Length = 119 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +A ++ ++++ L AG +E+ RGR Sbjct: 28 QGEKMPSLQDMALQMDVNPNTMYRVYTELESAGCIESQRGRG 69 >gi|313623172|gb|EFR93433.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria innocua FSL J1-023] Length = 325 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|311106060|ref|YP_003978913.1| transcriptional regulator family protein 16 [Achromobacter xylosoxidans A8] gi|310760749|gb|ADP16198.1| bacterial transcriptional regulator family protein 16 [Achromobacter xylosoxidans A8] Length = 252 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 10 GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R L + P ++ + +A + + + +IL LV AG++ Sbjct: 8 ALRALTLLEQVARSGQPVSLAALTDATGLPKPSVLRILSRLVDAGML 54 >gi|302349143|ref|YP_003816781.1| Predicted transcription regulator, ArsR family [Acidilobus saccharovorans 345-15] gi|302329555|gb|ADL19750.1| Predicted transcription regulator, ArsR family [Acidilobus saccharovorans 345-15] Length = 105 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ + +R++ A P +QIAEA ++ + L+ LV++G+V T G R G Sbjct: 22 SRGGEMRLRIVELLAK---GPANANQIAEALGVNYRTVRHHLELLVESGLVIT-EGPRYG 77 Query: 64 --VRLCRPADQITILDV 78 L + + ++ V Sbjct: 78 QLYYLSKDMLE-SLGRV 93 >gi|302523555|ref|ZP_07275897.1| GntR family transcriptional regulator [Streptomyces sp. SPB78] gi|302432450|gb|EFL04266.1| GntR family transcriptional regulator [Streptomyces sp. SPB78] Length = 140 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ +R L + A D +Q+ I+ +FK + L + G+V++ +G Sbjct: 16 QIAQQVRQALR-LGHLA-PGDKLPTAAQVVATTAINPNTVFKAYRELEREGLVDSRQGVG 73 >gi|288941255|ref|YP_003443495.1| ArsR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896627|gb|ADC62463.1| transcriptional regulator, ArsR family [Allochromatium vinosum DSM 180] Length = 315 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R L+ A + + ++ +A + + + + L L + G+V+ R Sbjct: 19 LRCLLLLATQGE--LCVCELTQATGVVQPHVSRHLAQLRELGLVQDRR 64 >gi|326328735|ref|ZP_08195073.1| putative GntR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325953478|gb|EGD45480.1| putative GntR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 131 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + + +R + D + + I+ + K + L AG+V G Sbjct: 18 QIVTQVRHALR--LGLLREGDQLPTVKDVVSRLAINPNTVSKAYRELEHAGLVTARAGVG 75 >gi|313622857|gb|EFR93172.1| putative cyclic nucleotide-binding protein [Listeria innocua FSL J1-023] Length = 233 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 13/62 (20%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56 L DYG+RV ++ + + +A+ S+ + K+L L + GI+E+ Sbjct: 155 LNTMIDYGLRV-------SEKTVELPKFLTYQILADHSNTSKSYTSKVLSNLREKGILES 207 Query: 57 VR 58 + Sbjct: 208 QK 209 >gi|306826109|ref|ZP_07459445.1| adc operon repressor AdcR [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431825|gb|EFM34805.1| adc operon repressor AdcR [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 146 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 7 TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D + +LM ++ S++A +S+ + K ++ LVK G++ET R Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85 >gi|255528412|ref|ZP_05395211.1| Helix-turn-helix type 11 domain protein [Clostridium carboxidivorans P7] gi|296184883|ref|ZP_06853294.1| HTH domain protein [Clostridium carboxidivorans P7] gi|255507893|gb|EET84334.1| Helix-turn-helix type 11 domain protein [Clostridium carboxidivorans P7] gi|296050665|gb|EFG90088.1| HTH domain protein [Clostridium carboxidivorans P7] Length = 317 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 M + +++AE + + +++ + L KA I V T +GR GG Sbjct: 10 MIITLQYKGLTTATELAETLEVDKKTIYRYINSLNKANIPVHTKKGRYGGFY 61 >gi|240172985|ref|ZP_04751643.1| putative transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 130 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68 +R+ + + + ++ +A + + + + L+ L AG+V R GR RL Sbjct: 54 VRIAIVLQLRESQRC-VHELVDALGVPQPLVSQHLKILKAAGVVTGERSGREVLYRLADH 112 Query: 69 PADQITILDVVKATEES 85 I + V A+EES Sbjct: 113 HLAHIVVDAVAHASEES 129 >gi|167759380|ref|ZP_02431507.1| hypothetical protein CLOSCI_01727 [Clostridium scindens ATCC 35704] gi|167662937|gb|EDS07067.1| hypothetical protein CLOSCI_01727 [Clostridium scindens ATCC 35704] Length = 302 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRG------GVRLCR 68 +AE +S + + ++ L KAGI + TV+G G G RL R Sbjct: 15 QQQRVTAPYLAERFEVSRRTINRDIEDLCKAGIPLVTVQGANGGISIMEGYRLNR 69 >gi|146338500|ref|YP_001203548.1| hypothetical protein BRADO1418 [Bradyrhizobium sp. ORS278] gi|146191306|emb|CAL75311.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 326 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + ++A+AC +S +++ + L AGI V RG GG RL Sbjct: 13 LQAKGQVTAPELAQACEVSVRTIYRDIDALSAAGIPVYAERGAEGGFRL 61 >gi|25027022|ref|NP_737076.1| putative transcription repressor [Corynebacterium efficiens YS-314] gi|23492302|dbj|BAC17276.1| putative transcription repressor [Corynebacterium efficiens YS-314] Length = 124 Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + +L H D + +A+A IS + ++ LV A +V Sbjct: 50 LSILYLITTHPDGRVSSNALAQALGISAPTVTHHMKKLVSARLVT 94 >gi|329945026|ref|ZP_08292976.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon 170 str. F0386] gi|328529487|gb|EGF56391.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon 170 str. F0386] Length = 370 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 R ++ C +D P++I+ IAE ++ L+ AGI++T Sbjct: 299 RTMLVCIAKDDGPSQIADIAERMDRPVNYVSVYRNRLLTAGIIKT 343 >gi|315612219|ref|ZP_07887133.1| adc operon repressor AdcR [Streptococcus sanguinis ATCC 49296] gi|315315612|gb|EFU63650.1| adc operon repressor AdcR [Streptococcus sanguinis ATCC 49296] Length = 146 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 7 TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +D + +LM ++ S++A +S+ + K ++ LVK G++ET R Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85 >gi|229495956|ref|ZP_04389680.1| ribonuclease BN [Porphyromonas endodontalis ATCC 35406] gi|229317048|gb|EEN82957.1| ribonuclease BN [Porphyromonas endodontalis ATCC 35406] Length = 436 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 13/94 (13%) Query: 2 HLTKR-TDYGIRVLMYCAI-------HNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 +++R TD+ + VL+ I + P + Q+A+ C I I++ L+ + Sbjct: 294 KVSRRYTDF-LTVLIMAHIVQRFVDPKSQEPYTVEQLADQCHIPVKLTTMIVRQLLALNL 352 Query: 54 VE----TVRGRRGGVRLCRPADQITILDVVKATE 83 + T + R G + +T+ ++ + Sbjct: 353 IVEVKYTKQSRTGNYYPAVDPETLTVGSLIARLD 386 >gi|254474036|ref|ZP_05087429.1| GntR-family transcriptional regulator [Pseudovibrio sp. JE062] gi|211956925|gb|EEA92132.1| GntR-family transcriptional regulator [Pseudovibrio sp. JE062] Length = 254 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 24/121 (19%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV- 79 D +I+E +S + + L G+V+ +G G L P DV+ Sbjct: 29 GDKLPTERKISEDLGVSRSLVRDAMIMLEVQGLVDVRKG-SGTYVLRLP------GDVMP 81 Query: 80 -KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138 A E E + +L + AF + + +++ R ++ Sbjct: 82 DSALETDIGPFELLQA-------------RQLLESNIAAFAATMA--TKADIIQMRETLA 126 Query: 139 K 139 K Sbjct: 127 K 127 >gi|210618010|ref|ZP_03291845.1| hypothetical protein CLONEX_04078 [Clostridium nexile DSM 1787] gi|210149003|gb|EEA80012.1| hypothetical protein CLONEX_04078 [Clostridium nexile DSM 1787] Length = 304 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCR 68 +R+L + +++IAE I ++ L +AG++ET RG +++CR Sbjct: 28 LRILSEL---EERAYNVNEIAECLQIPASSAALHVRVLEEAGLIETELRAAVRGSMKICR 84 Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 +D+ + E + +D + +CG+ S + + DV + S+ Sbjct: 85 KKVDGIFIDLQQEEEGEIDEIRMPIGNYVDYHVEPTCGIVS-----QDGYIDVEDEASV 138 >gi|170016654|ref|YP_001727573.1| biotin-(acetyl-CoA carboxylase) ligase [Leuconostoc citreum KM20] gi|169803511|gb|ACA82129.1| Biotin-(acetyl-CoA carboxylase) ligase [Leuconostoc citreum KM20] Length = 326 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+Y I D IA++ ++ ++K +Q L G +E+VRG+ G R A Sbjct: 7 LLYLLIQADGWVSGELIAQSLGMTRTSIWKSVQKLEAQGHTIESVRGQ--GYRYVEGAK- 63 Query: 73 ITILDV 78 I++ + Sbjct: 64 ISVAGI 69 >gi|83589342|ref|YP_429351.1| DeoR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572256|gb|ABC18808.1| transcriptional regulator, DeoR family [Moorella thermoacetica ATCC 39073] Length = 254 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC-RPADQIT 74 A+ ++++A+ S + + L+ L +AG++ R GG L R +++T Sbjct: 13 ALQQKGWLSVTELAQIVGASPATVRRDLKELERAGVLIRTR---GGTCLADRLPEEMT 67 >gi|315282931|ref|ZP_07871226.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria marthii FSL S4-120] gi|313613419|gb|EFR87268.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria marthii FSL S4-120] Length = 325 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +IA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|311108376|ref|YP_003981229.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763065|gb|ADP18514.1| bacterial regulatory protein, GntR family protein 55 [Achromobacter xylosoxidans A8] Length = 279 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 12 RVLMYC---AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 RVLM +D + +++E +S + + + +Q LV G + VRG Sbjct: 34 RVLMMILNWQQESDRFHTDHELSEQFDVSRMTVRQAIQELVDEGYLRRVRGSG 86 >gi|307323681|ref|ZP_07602891.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] gi|306891170|gb|EFN22146.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] Length = 260 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRG 62 + D + +L A P+ +++IAE I + +F++L L G+VE T RGR Sbjct: 14 QSVDRAVSILQVLAKQG--PSGVTEIAEELGIHKSTVFRLLATLESRGMVEQDTERGRYR 71 Query: 63 -GVRLCRPAD 71 G + A Sbjct: 72 IGYTMAELAA 81 >gi|256375418|ref|YP_003099078.1| GntR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919721|gb|ACU35232.1| transcriptional regulator, GntR family [Actinosynnema mirum DSM 43827] Length = 233 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A I+ + K + L G+V +VR R Sbjct: 31 EDLAAEYGININTVRKTVATLEAEGLVTSVRRRG 64 >gi|328948750|ref|YP_004366087.1| transcription regulator [Treponema succinifaciens DSM 2489] gi|328449074|gb|AEB14790.1| transcription regulator [Treponema succinifaciens DSM 2489] Length = 312 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 L+Y + + +AE +SE + + + L +AG+ V + +GR GG + Sbjct: 9 LVYI-LLDKKSVTAKNLAEHFGVSERTILRWAESLAEAGVPVYSTQGRYGGFSIAEN 64 >gi|311030901|ref|ZP_07708991.1| manganese transport transcriptional regulator [Bacillus sp. m3-13] Length = 141 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I + R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEDKGYARVSDIAEALAVHPSSVTKMVQKLDKDQYLIYEKYRGLVLTTKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|229174879|ref|ZP_04302399.1| Transcriptional regulator mntR [Bacillus cereus MM3] gi|228608547|gb|EEK65849.1| Transcriptional regulator mntR [Bacillus cereus MM3] Length = 163 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|163735106|ref|ZP_02142542.1| transcriptional regulator, GntR family, putative [Roseobacter litoralis Och 149] gi|161391564|gb|EDQ15897.1| transcriptional regulator, GntR family, putative [Roseobacter litoralis Och 149] Length = 243 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQITILDVVKA 81 +++AE +S + + L+ L ++ T RG GG + R QIT ++ + Sbjct: 38 AELAEQFDVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRISFQDAYPQQITTSTLLLS 97 Query: 82 TEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAF 118 F C A + ++ C PL L Sbjct: 98 MNAVSFSTACEARYALERACAPLSAERRTADHLATMRAEI 137 >gi|188583560|ref|YP_001927005.1| Crp/Fnr family transcriptional regulator [Methylobacterium populi BJ001] gi|179347058|gb|ACB82470.1| putative transcriptional regulator, Crp/Fnr family [Methylobacterium populi BJ001] Length = 253 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 11 IRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R L+ D P +A + +L +IL+ L + G++E RGR Sbjct: 156 LRWLLTLQDRLDSNVLPITQEALAAMLGVQRTYLTRILRMLQQQGLIEVGRGR 208 >gi|45657030|ref|YP_001116.1| DeoR family transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600267|gb|AAS69753.1| putative transcriptional regulator (DeoR family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 317 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 R+L + + +A+ +SE + + ++ L +GI V RG +GG L Sbjct: 5 RLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVYAERGSKGGWELSE 63 >gi|18977111|ref|NP_578468.1| AsnC family transcriptional regulator [Pyrococcus furiosus DSM 3638] gi|18892756|gb|AAL80863.1| transcriptional regulatory protein, asnC family [Pyrococcus furiosus DSM 3638] Length = 266 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L+Y + +D IS++A+ +S + L+ L K GI++ G + + Sbjct: 71 LIYL-LMDDARLSISELADRLGVSRPTIRSRLEKLEKEGIIQ-------GYTIKLNPE 120 >gi|73748676|ref|YP_307915.1| hypothetical protein cbdb_A858 [Dehalococcoides sp. CBDB1] gi|147669435|ref|YP_001214253.1| transcriptional regulator, TrmB [Dehalococcoides sp. BAV1] gi|289432702|ref|YP_003462575.1| hypothetical protein DehalGT_0753 [Dehalococcoides sp. GT] gi|73660392|emb|CAI82999.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] gi|146270383|gb|ABQ17375.1| transcriptional regulator, TrmB [Dehalococcoides sp. BAV1] gi|288946422|gb|ADC74119.1| Helix-turn-helix type 11 domain protein [Dehalococcoides sp. GT] Length = 111 Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 11/82 (13%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 T++ + VL + A H+ +IAE I+E + KI+ L G + + GR R Sbjct: 8 TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLETEGYIAKKKEGRGIKYR 64 Query: 66 LCRPAD-------QITILDVVK 80 + +I I D ++ Sbjct: 65 INPDLSLRHESYQEIIIGDFLE 86 >gi|298250804|ref|ZP_06974608.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297548808|gb|EFH82675.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 341 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + +Q+A +S +++ LQ L G+ V T RG GG+ L Sbjct: 10 ILLILQRKRSVSAAQLARQFEVSTRTIYRDLQTLSALGVPVYTSRGHGGGIHL 62 >gi|229086779|ref|ZP_04218942.1| Transcriptional regulator mntR [Bacillus cereus Rock3-44] gi|228696500|gb|EEL49322.1| Transcriptional regulator mntR [Bacillus cereus Rock3-44] Length = 163 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|288549994|ref|ZP_05968917.2| transcriptional regulator, GntR family [Enterobacter cancerogenus ATCC 35316] gi|288316925|gb|EFC55863.1| transcriptional regulator, GntR family [Enterobacter cancerogenus ATCC 35316] Length = 497 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A++ P ++A + +S + L L + G +E+ G Sbjct: 58 ALRLLILDGRLALNTRLPGE-RELATSLNVSRTTISSALAHLREEGYLESRHGSG 111 >gi|209546305|ref|YP_002278195.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539162|gb|ACI59095.1| transcriptional regulator, histidine utilization repressor, GntR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 240 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A +S + + K+L L KAG++E R ++ G + +P Q +L++ Sbjct: 37 DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84 >gi|270308179|ref|YP_003330237.1| transcriptional regulator [Dehalococcoides sp. VS] gi|270154071|gb|ACZ61909.1| transcriptional regulator [Dehalococcoides sp. VS] Length = 111 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 11/82 (13%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 T++ + VL + A H+ +IAE I+E + KI+ L G + + GR R Sbjct: 8 TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLETEGYIAKKKEGRGIKYR 64 Query: 66 LCRPAD-------QITILDVVK 80 + +I I D ++ Sbjct: 65 INPDLSLRHESYQEIIIGDFLE 86 >gi|29830608|ref|NP_825242.1| GntR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29607720|dbj|BAC71777.1| putative GntR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 132 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R + D ++ EA I+ + K + L + G+VE RG Sbjct: 21 QIVQQTKQALR--LGLLEPGDKLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 76 >gi|5759267|gb|AAD51062.1|AF175293_7 unknown [Enterococcus faecium] Length = 302 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + C + ++AE +S + + L L AG V T +G GG+ L Sbjct: 9 ILCVLLEREKITAQELAEYFEVSVRTIHRDLLDLSSAGFPVTTQQGIGGGISL 61 >gi|261404091|ref|YP_003240332.1| ArsR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280554|gb|ACX62525.1| transcriptional regulator, ArsR family [Paenibacillus sp. Y412MC10] Length = 310 Score = 36.9 bits (85), Expect = 0.98, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D +R+L D P + Q+AEA I++ + +Q L +A ++ + +G Sbjct: 25 SDVRVRILEAL---GDKPMSVGQLAEALGIAQPTVSINVQMLEQAELIVSSQGAN 76 >gi|159044867|ref|YP_001533661.1| regulatory protein [Dinoroseobacter shibae DFL 12] gi|157912627|gb|ABV94060.1| regulatory protein [Dinoroseobacter shibae DFL 12] Length = 242 Score = 36.9 bits (85), Expect = 0.98, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +++AE +S + + L+ L ++ T RG GG Sbjct: 38 AELAERFEVSRPTVREALKRLAAQNLIRTQRGATGG 73 >gi|329923250|ref|ZP_08278735.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] gi|328941485|gb|EGG37776.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] Length = 310 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D +R+L D P + Q+AEA I++ + +Q L +A ++ + +G Sbjct: 25 SDVRVRILEAL---GDKPMSVGQLAEALGIAQPTVSINVQMLEQAELIVSSQGAN 76 >gi|322386226|ref|ZP_08059859.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269806|gb|EFX52733.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 314 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 +++AE +S +++ + L AGI + + +G+ GG+ + Sbjct: 34 GKVTATELAEKFEVSVRTIYRDVDSLSSAGIPIYSTQGKGGGIEIAED 81 >gi|228990464|ref|ZP_04150429.1| Transcriptional regulator, GntR [Bacillus pseudomycoides DSM 12442] gi|228996566|ref|ZP_04156205.1| Transcriptional regulator, GntR [Bacillus mycoides Rock3-17] gi|229004216|ref|ZP_04162017.1| Transcriptional regulator, GntR [Bacillus mycoides Rock1-4] gi|228757077|gb|EEM06321.1| Transcriptional regulator, GntR [Bacillus mycoides Rock1-4] gi|228763198|gb|EEM12106.1| Transcriptional regulator, GntR [Bacillus mycoides Rock3-17] gi|228768990|gb|EEM17588.1| Transcriptional regulator, GntR [Bacillus pseudomycoides DSM 12442] Length = 125 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + GIV T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELEREGIVVTRRGMG 71 >gi|227496552|ref|ZP_03926832.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434] gi|226833967|gb|EEH66350.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434] Length = 319 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 12/92 (13%) Query: 3 LTKRTDYG-IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ RTD +R+++ A ++++ R + IA +S+ + ++L+ V G+V TV Sbjct: 1 MSARTDAAQLRLMVRIARMYHELGMRQTDIASELHVSQPRVSRLLKRAVAEGVVRTV--- 57 Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92 + P T+L+ +A EE + +AEC Sbjct: 58 -----VTAPEGTYTVLE--EAVEERYGLAECI 82 >gi|254524438|ref|ZP_05136493.1| repressor [Stenotrophomonas sp. SKA14] gi|219722029|gb|EED40554.1| repressor [Stenotrophomonas sp. SKA14] Length = 322 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R+L A+ +++AE + + + ++ L + G V+ Sbjct: 1 MRHTAH-----RLLRLIALLQARRQWSGAELAERMGVDRRSIRRDIERLRELGYPVQASA 55 Query: 59 GRRGGVRLC 67 G GG +L Sbjct: 56 GVGGGYQLG 64 >gi|191639668|ref|YP_001988834.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus casei BL23] gi|190713970|emb|CAQ67976.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus casei BL23] gi|327383779|gb|AEA55255.1| Transcriptional regulator, DeoR family [Lactobacillus casei LC2W] gi|327386972|gb|AEA58446.1| Transcriptional regulator, DeoR family [Lactobacillus casei BD-II] Length = 253 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +++ RI+ + + +S L K + L + G ++ +R GG L +P ++ Sbjct: 14 LNDKGSVRIADLTKELDVSRETLRKDIAELGRQGKLQVIR---GGAVLNKPVNE 64 >gi|29832122|ref|NP_826756.1| IclR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29609240|dbj|BAC73291.1| putative IclR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 263 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 A D P R++++A+ + ++ +LQ LV G V T Sbjct: 26 LAARGDRPARLTELADELDVPRSSMYALLQTLVTRGWVRT 65 >gi|284990922|ref|YP_003409476.1| IclR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064167|gb|ADB75105.1| transcriptional regulator, IclR family [Geodermatophilus obscurus DSM 43160] Length = 255 Score = 36.9 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + VL A + +++++A C IS+ ++L L V G G L Sbjct: 24 ALVVLQALA-EDGGAVQLAELARRCGISKPTAHRVLAGLRALAWVRAHEG--GRYSLGPQ 80 Query: 70 A 70 A Sbjct: 81 A 81 >gi|125717832|ref|YP_001034965.1| biotin--protein ligase [Streptococcus sanguinis SK36] gi|125497749|gb|ABN44415.1| Biotin--[acetyl-CoA-carboxylase] ligase, putative [Streptococcus sanguinis SK36] Length = 311 Score = 36.9 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQTDDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|83720436|ref|YP_443377.1| transcriptional regulator [Burkholderia thailandensis E264] gi|83654261|gb|ABC38324.1| transcriptional regulator, putative [Burkholderia thailandensis E264] Length = 306 Score = 36.9 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A +D P ++AE I + + +I LV AG + Sbjct: 52 ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 101 >gi|302561031|ref|ZP_07313373.1| transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302478649|gb|EFL41742.1| transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 328 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + Q L +AG+ V RGR GG RL Sbjct: 14 MVLLLQSRPSMTAAELASELEVSERTVTRDAQALSEAGVPVYADRGRIGGYRL 66 >gi|297159347|gb|ADI09059.1| ArsR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 378 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+ + A P+ ++AE C I+ + + + + KAG++ T R RG L Sbjct: 307 MRMCLSLAR---GPHTTGELAEWCGITPPEVSRHIAVMKKAGLLTTRR--RGRYVL 357 >gi|283834223|ref|ZP_06353964.1| transcriptional regulator, GntR family [Citrobacter youngae ATCC 29220] gi|291070377|gb|EFE08486.1| transcriptional regulator, GntR family [Citrobacter youngae ATCC 29220] Length = 475 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A+ + P ++A +S + + L + G +E+ G Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAAVLEVSRTTVASAMAQLREEGYLESRHGSG 87 >gi|307273345|ref|ZP_07554590.1| DRTGG domain protein [Enterococcus faecalis TX0855] gi|306509872|gb|EFM78897.1| DRTGG domain protein [Enterococcus faecalis TX0855] Length = 144 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA++ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESF 86 VV+ E Sbjct: 77 VVRIIEGDV 85 >gi|190573593|ref|YP_001971438.1| putative DeoR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011515|emb|CAQ45133.1| putative DeoR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 322 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R+L A+ +++AE + + + ++ L + G V+ Sbjct: 1 MRHTAH-----RLLRLIALLQARRQWSGAELAERMGVDRRSIRRDIERLRELGYPVQASS 55 Query: 59 GRRGGVRLC 67 G GG +L Sbjct: 56 GVGGGYQLG 64 >gi|153807914|ref|ZP_01960582.1| hypothetical protein BACCAC_02200 [Bacteroides caccae ATCC 43185] gi|149129523|gb|EDM20737.1| hypothetical protein BACCAC_02200 [Bacteroides caccae ATCC 43185] Length = 331 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 REGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|325662660|ref|ZP_08151260.1| hypothetical protein HMPREF0490_02000 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471157|gb|EGC74383.1| hypothetical protein HMPREF0490_02000 [Lachnospiraceae bacterium 4_1_37FAA] Length = 287 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 R+L Y H P I +++E +S +L +I + Sbjct: 189 RILTYINQHIQNPLTIKELSENFYLSPSYLCRIFK 223 >gi|307596090|ref|YP_003902407.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM 14429] gi|307551291|gb|ADN51356.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM 14429] Length = 249 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 T Y I+ Y A+ + P +A I ++ +L L + G VE Sbjct: 17 TSYDIKA--YIALVENGPLTARDVAMKANIPSSKVYSVLHKLYRLGYVE 63 >gi|253577040|ref|ZP_04854362.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843534|gb|EES71560.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 319 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC---------RP 69 N Q+AE +SE + + ++ L AGI V RG RGG L Sbjct: 14 QNRGKMSSRQLAELLEVSERTIVRDIEALSAAGIPVYAERGSRGGWVLADSYRTNLTGMR 73 Query: 70 ADQI 73 ++I Sbjct: 74 PEEI 77 >gi|225862626|ref|YP_002748004.1| hypothetical protein BCA_0686 [Bacillus cereus 03BB102] gi|225790965|gb|ACO31182.1| conserved hypothetical protein [Bacillus cereus 03BB102] Length = 317 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVRRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|149198729|ref|ZP_01875772.1| transcriptional regulator, IclR family protein [Lentisphaera araneosa HTCC2155] gi|149138165|gb|EDM26575.1| transcriptional regulator, IclR family protein [Lentisphaera araneosa HTCC2155] Length = 259 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +RV+ A + +S+I++A I + F+I + G +E Sbjct: 19 ALRVMELLADNPKG-LTMSEISDALEIPKNSAFRITATMEHRGFLE 63 >gi|118469865|ref|YP_885744.1| DeoR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171152|gb|ABK72048.1| DeoR-family protein transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 320 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RV+ + ++AE ++ + + ++ L + G V +G+ GG +L Sbjct: 10 RVVQLLGLLQSRRVWTGEELAERLGVTGRSVRRDIERLRELGYPVHASKGQGGGYQLG 67 >gi|150389109|ref|YP_001319158.1| GntR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948971|gb|ABR47499.1| transcriptional regulator, GntR family [Alkaliphilus metalliredigens QYMF] Length = 223 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 12/66 (18%) Query: 1 MHL-------TKRTDYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49 M + T R DY +R+L + + +++A +S + + L L Sbjct: 1 MQIAERLAKETTR-DYALRILKYNIIMLELKPGSIVSENELATEIGVSRTPVREALIELS 59 Query: 50 KAGIVE 55 K IVE Sbjct: 60 KTQIVE 65 >gi|116623501|ref|YP_825657.1| ArsR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226663|gb|ABJ85372.1| transcriptional regulator, ArsR family [Candidatus Solibacter usitatus Ellin6076] Length = 113 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 15/72 (20%) Query: 1 MHLTKR--TDYG-----------IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 M T T Y +R++ + + H + + +I E +S L L Sbjct: 1 MKKTSEQVTRYADMFAAMGTESRLRIMQLLLSAHPEGMV-VGEIQEELGLSASNLSHHLD 59 Query: 47 PLVKAGIVETVR 58 L G+V R Sbjct: 60 KLKNEGLVRVTR 71 >gi|332668890|ref|YP_004451898.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484] gi|332337928|gb|AEE44511.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484] Length = 121 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 RT I ++ ++ IAEA + + L L +V + R Sbjct: 35 RTRLAILAMLD-----GTEMPVNAIAEALGRPAPAVSQHLARLRAGRLVTSRR 82 >gi|315150459|gb|EFT94475.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0012] Length = 260 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 + + + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|310658055|ref|YP_003935776.1| sigma-54-dependent transcriptional regulator [Clostridium sticklandii DSM 519] gi|308824833|emb|CBH20871.1| putative sigma-54-dependent transcriptional regulator [Clostridium sticklandii] Length = 668 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L+ A + P + ++ L KIL L G V + +GR G + ++ Sbjct: 615 MLIRLAEKENVPVKEAE-----------LKKILTNLKNQGFVNSGKGRAGTYITQKGLEE 663 Query: 73 IT 74 ++ Sbjct: 664 LS 665 >gi|299822666|ref|ZP_07054552.1| conserved hypothetical protein [Listeria grayi DSM 20601] gi|299816195|gb|EFI83433.1| conserved hypothetical protein [Listeria grayi DSM 20601] Length = 196 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 15/74 (20%) Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIV- 54 M L RV+ Y A+ +N+ + IA++ +S + + + + L K GI+ Sbjct: 33 MKLNTNQR---RVIEYLALIAGNNNGVCHVYRQTIADSLQVSPVTVSRAFRALKKLGIIK 89 Query: 55 ------ETVRGRRG 62 ++V G RG Sbjct: 90 VQATAKKSVNGGRG 103 >gi|229179587|ref|ZP_04306939.1| transcriptional regulator [Bacillus cereus 172560W] gi|228603881|gb|EEK61350.1| transcriptional regulator [Bacillus cereus 172560W] Length = 219 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + + ++AE IS + + L+ L G+VE++ G Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71 >gi|284033429|ref|YP_003383360.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283812722|gb|ADB34561.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 320 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +AE +S L + + L + G V+ G GG L Sbjct: 26 LAERLGVSARTLRRDIDRLRELGYPVDANPGVDGGYALA 64 >gi|89069250|ref|ZP_01156617.1| transcriptional regulator, GntR family protein [Oceanicola granulosus HTCC2516] gi|89045248|gb|EAR51315.1| transcriptional regulator, GntR family protein [Oceanicola granulosus HTCC2516] Length = 225 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 14/129 (10%) Query: 5 KRTDYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + DY R+++ + ++ A +S + + + L + G+VE +R R Sbjct: 10 TQADYAYGELKRMMLDGTLQFGAQMLEAEAATRLGVSRTPVREAMIRLQQEGMVE-LRPR 68 Query: 61 RGGVRLCRPADQIT-ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 G L AD + I DV+ A E E A + D + L A++ Sbjct: 69 HGMRVLPVSADDMRDIYDVLTALEGKAA--ELVAQKRPDEAALAG------LWDAVDQME 120 Query: 120 DVLTQYSIE 128 L ++ Sbjct: 121 RALAAEDLD 129 >gi|297567066|ref|YP_003686038.1| Helix-turn-helix type 11 domain-containing protein [Meiothermus silvanus DSM 9946] gi|296851515|gb|ADH64530.1| Helix-turn-helix type 11 domain protein [Meiothermus silvanus DSM 9946] Length = 324 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 Q+AE +SE + + ++ L AG+ V RG RGG RL Sbjct: 17 GRVTSRQLAERLEVSERTIHRDMEALTAAGVPVYAERGSRGGWRL 61 >gi|302877060|ref|YP_003845693.1| regulatory protein DeoR [Clostridium cellulovorans 743B] gi|307687751|ref|ZP_07630197.1| regulatory protein DeoR [Clostridium cellulovorans 743B] gi|302579917|gb|ADL53929.1| regulatory protein DeoR [Clostridium cellulovorans 743B] Length = 304 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + I N ++AE +S + + + L AGI + G+ GG +L Sbjct: 9 ILLMIINKEKITAKELAEHYQVSVRTIQRDIDTLSMAGIPIYAESGKNGGYQL 61 >gi|240103565|ref|YP_002959874.1| hypothetical protein TGAM_1508 [Thermococcus gammatolerans EJ3] gi|239911119|gb|ACS34010.1| Hypothetical protein TGAM_1508 [Thermococcus gammatolerans EJ3] Length = 202 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 25/46 (54%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +Y + + RI +IA ++ + +++++ LV+ G V V GR Sbjct: 13 IYSVMFDREGLRIPEIARITGLNYTYTYQVVRSLVREGYVTVVGGR 58 >gi|190895398|ref|YP_001985690.1| transcriptional regulator GntR family [Rhizobium etli CIAT 652] gi|190699343|gb|ACE93427.1| putative transcriptional regulator protein, GntR family [Rhizobium etli CIAT 652] Length = 240 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A +S + + K+L L KAG++E R ++ G + +P Q +L++ Sbjct: 37 DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84 >gi|329947526|ref|ZP_08294718.1| transcriptional regulator, MarR family [Actinomyces sp. oral taxon 170 str. F0386] gi|328524216|gb|EGF51289.1| transcriptional regulator, MarR family [Actinomyces sp. oral taxon 170 str. F0386] Length = 157 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 TDY R L + D RIS++A +++ +++ L G+V Sbjct: 49 TDY--RALALLSEAPDRELRISELAIRIGLNQSSTTRLVGRLELKGLVT 95 >gi|320156556|ref|YP_004188935.1| glycerol-3-phosphate regulon repressor, DeoR family [Vibrio vulnificus MO6-24/O] gi|319931868|gb|ADV86732.1| glycerol-3-phosphate regulon repressor, DeoR family [Vibrio vulnificus MO6-24/O] Length = 253 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R ++L Y + ++E +S + K + L G+V R Sbjct: 1 MSLSTRQK---QILAYL-QQTHGVLSSALLSERFNVSVQTIRKDMNDLSDKGMV---RRV 53 Query: 61 RGGVRL 66 GG+ L Sbjct: 54 HGGISL 59 >gi|293605111|ref|ZP_06687503.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292816514|gb|EFF75603.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 246 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RVL A +D P I+ +AE +++ L++ + L + G V G G Sbjct: 12 RVLYVLATLARHDGPLTIAALAEKTGLAQSTLYRQVALLKRWGFVAEHEGEYG 64 >gi|297566010|ref|YP_003684982.1| IclR family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850459|gb|ADH63474.1| transcriptional regulator, IclR family [Meiothermus silvanus DSM 9946] Length = 835 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + +RVL Y A H + ++A S + +L LV G E G Sbjct: 6 RLST-VEAALRVLAYLAAHPEG-LEAREVARMLGKSLSTAYALLASLVAEGFAE-REGSS 62 Query: 62 GGVRLCRPA 70 R+ + A Sbjct: 63 --YRVSKAA 69 >gi|226307112|ref|YP_002767072.1| DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186229|dbj|BAH34333.1| putative DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 321 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R L ++ + +++A +++ + + + L G V++ G+ GG RL Sbjct: 8 RALQLLSLLQTHRFWHCAELAARLDVTQRTVRRDIDRLRALGYPVDSTSGKYGGYRL 64 >gi|315172227|gb|EFU16244.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX1346] Length = 260 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 + + + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|311066999|ref|YP_003971922.1| hypothetical protein BATR1942_00155 [Bacillus atrophaeus 1942] gi|310867516|gb|ADP30991.1| hypothetical protein BATR1942_00155 [Bacillus atrophaeus 1942] Length = 219 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + + ++AE IS + + L+ L G+VE++ G Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71 >gi|302544371|ref|ZP_07296713.1| putative ArsR-family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461989|gb|EFL25082.1| putative ArsR-family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 325 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+ A P+ ++AEA I+ + + + L KAG++ T R RG L Sbjct: 254 MRICRTLAR---GPHTTGELAEAYAITPPEVSRHIAVLKKAGLLHTRR--RGRYVL 304 >gi|327191407|gb|EGE58432.1| transcriptional regulator, histidine utilization repressor, GntR family [Rhizobium etli CNPAF512] Length = 256 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A +S + + K+L L KAG++E R ++ G + +P Q +L++ Sbjct: 53 DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 100 >gi|315029306|gb|EFT41238.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX4000] Length = 260 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 + + + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|317128134|ref|YP_004094416.1| GntR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473082|gb|ADU29685.1| transcriptional regulator, GntR family [Bacillus cellulosilyticus DSM 2522] Length = 131 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N+ + +++ I+ + K Q L + G++ T+RGR Sbjct: 31 QPNEKLPSVRELSSQMVINPNTVSKAYQELERQGVIVTIRGRG 73 >gi|282898392|ref|ZP_06306383.1| RNA binding S1 [Raphidiopsis brookii D9] gi|281196923|gb|EFA71828.1| RNA binding S1 [Raphidiopsis brookii D9] Length = 718 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+H + + +IA + + +I + L K GI + L + T+ D Sbjct: 562 AVHPESYLLVEKIAGDLQVPLNQVTQIAERLKKTGIKK---------YLTDAIGEPTLRD 612 Query: 78 VVKATEES 85 +++ E+ Sbjct: 613 ILRELEKP 620 >gi|228912354|ref|ZP_04076047.1| transcriptional regulator [Bacillus thuringiensis IBL 200] gi|228847276|gb|EEM92237.1| transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 219 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + + ++AE IS + + L+ L G+VE++ G Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71 >gi|297199584|ref|ZP_06916981.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197713488|gb|EDY57522.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 260 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + +L A D P R+ ++A+ + ++ +LQ L+ G V T Sbjct: 17 VELLELLAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 62 >gi|148380138|ref|YP_001254679.1| GntR family transcriptional regulator/aminotransferase, classes I and II [Clostridium botulinum A str. ATCC 3502] gi|153934045|ref|YP_001384436.1| GntR family transcriptional regulator [Clostridium botulinum A str. ATCC 19397] gi|153935225|ref|YP_001387972.1| GntR family transcriptional regulator [Clostridium botulinum A str. Hall] gi|148289622|emb|CAL83725.1| GntR family regulatory protein [Clostridium botulinum A str. ATCC 3502] gi|152930089|gb|ABS35589.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum A str. ATCC 19397] gi|152931139|gb|ABS36638.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum A str. Hall] Length = 497 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSEFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73 >gi|29831226|ref|NP_825860.1| transcription regulator ArsR [Streptomyces avermitilis MA-4680] gi|29608341|dbj|BAC72395.1| putative ArsR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 374 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+ Y A P ++A A +S + + L L KAG++ T R RG L Sbjct: 303 LRLCRYIARA---PYTTGELAHAHDLSAPEVSRHLTVLKKAGLLTTRR--RGRYVL 353 >gi|53718904|ref|YP_107890.1| IclR family transcriptional regulatory protein [Burkholderia pseudomallei K96243] gi|76808634|ref|YP_332906.1| IclR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|126439852|ref|YP_001058409.1| IclR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126453037|ref|YP_001065643.1| IclR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134283851|ref|ZP_01770548.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] gi|217423787|ref|ZP_03455288.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] gi|237811652|ref|YP_002896103.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] gi|242314650|ref|ZP_04813666.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1106b] gi|254180300|ref|ZP_04886899.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gi|254198066|ref|ZP_04904488.1| transcriptional regulator, IclR family [Burkholderia pseudomallei S13] gi|254258398|ref|ZP_04949452.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1710a] gi|52209318|emb|CAH35263.1| putative IclR-family transcriptional regulatory protein [Burkholderia pseudomallei K96243] gi|76578087|gb|ABA47562.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1710b] gi|126219345|gb|ABN82851.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 668] gi|126226679|gb|ABN90219.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1106a] gi|134244839|gb|EBA44936.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] gi|169654807|gb|EDS87500.1| transcriptional regulator, IclR family [Burkholderia pseudomallei S13] gi|184210840|gb|EDU07883.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gi|217393645|gb|EEC33666.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] gi|237502988|gb|ACQ95306.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] gi|242137889|gb|EES24291.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1106b] gi|254217087|gb|EET06471.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1710a] Length = 275 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A +D P ++AE I + + +I LV AG + Sbjct: 21 ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 70 >gi|71153381|sp|Q93PU6|TTGV_PSEPU RecName: Full=HTH-type transcriptional regulator ttgV; AltName: Full=Toluene tolerance pump ttgGHI operon repressor gi|14582623|gb|AAK69562.1|AF299253_2 putative regulatory protein TtgV [Pseudomonas putida] Length = 259 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ H + ++ IA+ + + +I+ L + +VE + G GG RL Sbjct: 23 IMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGFRLG 75 >gi|172058224|ref|YP_001814684.1| regulatory protein GntR HTH [Exiguobacterium sibiricum 255-15] gi|171990745|gb|ACB61667.1| regulatory protein GntR HTH [Exiguobacterium sibiricum 255-15] Length = 172 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + D ++AE IS + + L+ L GI+ET G G L R Sbjct: 25 VPGDRIPSERELAERLSISRPSVREALRTLAYLGIIETRHG-GGSFLLNRD 74 >gi|317123900|ref|YP_004098012.1| MarR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587988|gb|ADU47285.1| regulatory protein MarR [Intrasporangium calvum DSM 43043] Length = 148 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 1 MHLTKRTDY------GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +++R + A D P S++AE IS + + LV+AG V Sbjct: 26 MRISRRVRFESDQELAPHHFSVLARLEDAPRTNSELAEIERISAPSMKRTTTHLVEAGYV 85 >gi|315180082|gb|ADT86996.1| transcriptional regulator of sugar metabolism [Vibrio furnissii NCTC 11218] Length = 252 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R ++L Y + ++E +S + K + L G+V R Sbjct: 1 MSLSTRQK---QILAYL-QQAHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRV 53 Query: 61 RGGVRL 66 GG+ L Sbjct: 54 HGGISL 59 >gi|313618822|gb|EFR90709.1| Rrf2 family protein [Listeria innocua FSL S4-378] Length = 51 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 15/29 (51%) Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + + NA DVL Q ++ L+++ + Sbjct: 12 RELWTRMRNAVRDVLDQTTLSDLLKHSTD 40 >gi|260768373|ref|ZP_05877307.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio furnissii CIP 102972] gi|260616403|gb|EEX41588.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio furnissii CIP 102972] Length = 252 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ R ++L Y + ++E +S + K + L G+V R Sbjct: 1 MSLSTRQK---QILAYL-QQAHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRV 53 Query: 61 RGGVRL 66 GG+ L Sbjct: 54 HGGISL 59 >gi|163839361|ref|YP_001623766.1| GntR family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952837|gb|ABY22352.1| transcriptional regulator, GntR family [Renibacterium salmoninarum ATCC 33209] Length = 257 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +AE +S L + L L ++G + RGR GG Sbjct: 58 RDLAERLGVSRSTLREALSALQESGHLVIRRGRYGG 93 >gi|30022287|ref|NP_833918.1| manganese transport transcriptional regulator [Bacillus cereus ATCC 14579] gi|296504691|ref|YP_003666391.1| manganese transport transcriptional regulator [Bacillus thuringiensis BMB171] gi|38604745|sp|Q818P5|MNTR_BACCR RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|29897844|gb|AAP11119.1| Manganese transport transcription regulator [Bacillus cereus ATCC 14579] gi|296325743|gb|ADH08671.1| manganese transport transcriptional regulator [Bacillus thuringiensis BMB171] Length = 142 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|19553477|ref|NP_601479.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62391120|ref|YP_226522.1| ArsR family regulatory protein [Corynebacterium glutamicum ATCC 13032] gi|145296233|ref|YP_001139054.1| hypothetical protein cgR_2150 [Corynebacterium glutamicum R] gi|21325050|dbj|BAB99672.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41326459|emb|CAF20621.1| Bacterial regulatory proteins, ArsR family [Corynebacterium glutamicum ATCC 13032] gi|140846153|dbj|BAF55152.1| hypothetical protein [Corynebacterium glutamicum R] Length = 123 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +R+ + A++ + P+ + ++ + S+ + + L+ L AGIV+ R GR+ L P Sbjct: 47 LRIEIILALN-ERPHYVHELVKLVKSSQPLVSQHLKVLKTAGIVDAERQGRQMTYSLAEP 105 >gi|326331915|ref|ZP_08198201.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325950228|gb|EGD42282.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 317 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L ++ + ++++ +SE L + ++ L G V+ RG GG +L Sbjct: 6 RMLQLLSLLQTHRFWPGTELSVRLEVSERTLRRDIERLRDLGYDVDATRGVAGGYQL 62 >gi|290962383|ref|YP_003493565.1| hypothetical protein SCAB_80781 [Streptomyces scabiei 87.22] gi|260651909|emb|CBG75039.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 115 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRR 61 + AI D R+ IA C ++E + KI+ L ++G + T +GR Sbjct: 17 HARVLAAIAEDRTVRVRDIAARCRLTERAVQKIIADLEQSGFLSHTRQGRG 67 >gi|257139626|ref|ZP_05587888.1| transcriptional regulator, putative [Burkholderia thailandensis E264] Length = 275 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A +D P ++AE I + + +I LV AG + Sbjct: 21 ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 70 >gi|256619140|ref|ZP_05475986.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 4200] gi|300860601|ref|ZP_07106688.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TUSoD Ef11] gi|307274881|ref|ZP_07556044.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX2134] gi|256598667|gb|EEU17843.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 4200] gi|300849640|gb|EFK77390.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TUSoD Ef11] gi|306508329|gb|EFM77436.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX2134] gi|315034048|gb|EFT45980.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0017] Length = 260 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 + + + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|318060620|ref|ZP_07979343.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318077588|ref|ZP_07984920.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actF] gi|333022526|ref|ZP_08450590.1| putative GntR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332742378|gb|EGJ72819.1| putative GntR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 140 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ +R L + A D +Q+ I+ +FK + L + G+V++ +G Sbjct: 16 QIAQQVRQALR-LGHLA-PGDKLPTAAQVVATTAINPNTVFKAYRELEREGLVDSRQGVG 73 >gi|312126430|ref|YP_003991304.1| GntR family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776449|gb|ADQ05935.1| transcriptional regulator, GntR family [Caldicellulosiruptor hydrothermalis 108] Length = 121 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +++ I+ ++ Q L + G+ +T RG Sbjct: 30 GEKLPSVREMSRMFNINPNTAQRVFQELEREGLTKTERGIG 70 >gi|307595847|ref|YP_003902164.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM 14429] gi|307551048|gb|ADN51113.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM 14429] Length = 157 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IRVL Y + ++IA + + + +I++ L G++ R Sbjct: 84 IRVLSYLLSRGGDAYQ-AEIARELGLPKSTVSRIIRRLHDRGLITVRR 130 >gi|259417331|ref|ZP_05741250.1| transcriptional regulator, AraC family [Silicibacter sp. TrichCH4B] gi|259346237|gb|EEW58051.1| transcriptional regulator, AraC family [Silicibacter sp. TrichCH4B] Length = 339 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45 +R + ++P ++IAE IS L ++ Sbjct: 231 VRAMAIMEEFIEHPLPTAEIAERAGISVRHLERLF 265 >gi|331697542|ref|YP_004333781.1| IclR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952231|gb|AEA25928.1| transcriptional regulator, IclR family [Pseudonocardia dioxanivorans CB1190] Length = 256 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +R+L A P + E ++ + IL L +AG RG R G L Sbjct: 11 AVRLLERIAREWPDPVPTGTLIEELGLNRSTCYNILGTLQRAGW-AATRGDRAGWWLG 67 >gi|296164650|ref|ZP_06847216.1| ArsR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899958|gb|EFG79398.1| ArsR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 107 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + +I+ +S+ + L+ L AG++ R Sbjct: 37 LRMLSLIASHPGGEACVCEISATFDLSQPTISHHLKLLRSAGLLGCER 84 >gi|291302510|ref|YP_003513788.1| IclR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571730|gb|ADD44695.1| transcriptional regulator, IclR family [Stackebrandtia nassauensis DSM 44728] Length = 263 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 VL A +++A A I + L + G+V R GG L + Sbjct: 24 VLRALAASGGRALSAAELATAADIPRSSAMNVCVALTQIGLV---RAVSGGFALGPGLTE 80 Query: 73 IT 74 ++ Sbjct: 81 LS 82 >gi|227830319|ref|YP_002832099.1| TrmB family transcriptional regulator [Sulfolobus islandicus L.S.2.15] gi|227456767|gb|ACP35454.1| transcriptional regulator TrmB [Sulfolobus islandicus L.S.2.15] Length = 645 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A+ ++ + ++A+A IS+ + +L+ L + G+VE V+ Sbjct: 477 ALPDEGGLKSQEVADALKISKQYAINVLKNLERKGVVEGVK 517 >gi|254518231|ref|ZP_05130287.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911980|gb|EEH97181.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 244 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 1 MHLTKRTDYGIRV---LMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAG 52 M +K+ Y + V L D P+ +A+ +S L + L L G Sbjct: 7 MKKSKKLRY-VEVYNTLFKMIKEEDLPDNYRLPSEPDLAKELGVSRTTLRQALSLLQDDG 65 Query: 53 IVETVRGRR 61 +++ +RG+ Sbjct: 66 LIKNIRGKG 74 >gi|221195294|ref|ZP_03568350.1| iron-dependent transcriptional regulator [Atopobium rimae ATCC 49626] gi|221185197|gb|EEE17588.1| iron-dependent transcriptional regulator [Atopobium rimae ATCC 49626] Length = 142 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%) Query: 3 LTKRT-DYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+K DY + + ++ ND R IAE+ +S+ + K L L + G+VE R Sbjct: 12 LSKAGEDY-LEAIYRISLDQPENDRSVRSVDIAESLDVSKASVNKALSLLKEQGMVEQSR 70 Query: 59 GRRGGVRLCRPADQITILDVVKA 81 G V L ++ T V +A Sbjct: 71 --YGRVTLTSDGEE-TARQVWRA 90 >gi|239618349|ref|YP_002941671.1| transcriptional regulator, GntR family [Kosmotoga olearia TBF 19.5.1] gi|239507180|gb|ACR80667.1| transcriptional regulator, GntR family [Kosmotoga olearia TBF 19.5.1] Length = 242 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +I E +S + + L+ L + GI+E ++G+ Sbjct: 27 RGDQLPTEKEICEMFNVSRTTVRRALEELKREGIIERIKGKG 68 >gi|169797426|ref|YP_001715219.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|184156651|ref|YP_001844990.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|213155760|ref|YP_002317805.1| transcriptional regulator, IclR family [Acinetobacter baumannii AB0057] gi|215484863|ref|YP_002327102.1| Pca operon regulatory protein [Acinetobacter baumannii AB307-0294] gi|239500950|ref|ZP_04660260.1| Pca operon regulatory protein [Acinetobacter baumannii AB900] gi|260556318|ref|ZP_05828537.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|301345133|ref|ZP_07225874.1| Pca operon regulatory protein [Acinetobacter baumannii AB056] gi|301510706|ref|ZP_07235943.1| Pca operon regulatory protein [Acinetobacter baumannii AB058] gi|301594966|ref|ZP_07239974.1| Pca operon regulatory protein [Acinetobacter baumannii AB059] gi|332854382|ref|ZP_08435334.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332867597|ref|ZP_08437745.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332873058|ref|ZP_08441015.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|169150353|emb|CAM88250.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|183208245|gb|ACC55643.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|193076164|gb|ABO10780.2| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213054920|gb|ACJ39822.1| transcriptional regulator, IclR family [Acinetobacter baumannii AB0057] gi|213985747|gb|ACJ56046.1| Pca operon regulatory protein [Acinetobacter baumannii AB307-0294] gi|260410373|gb|EEX03672.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|322506538|gb|ADX01992.1| transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323516417|gb|ADX90798.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728058|gb|EGJ59449.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733871|gb|EGJ65017.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332738570|gb|EGJ69440.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 257 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ I ++ + + I E +S+ ++ L+ LV A +++ + G Sbjct: 1 MAISSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I +LD V + T+ ++ F + ++ C L + L Sbjct: 59 SGDYTLG---SKIAVLDYVSRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107 >gi|162449397|ref|YP_001611764.1| ArsR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159979|emb|CAN91284.1| transcriptional regulator, ArsR family [Sorangium cellulosum 'So ce 56'] Length = 145 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 L+ T I P + ++A+ IS+ + K L L +AG++E R GR+ Sbjct: 47 LSDATRRAI-----LVRLKTGPASVHELAQPFQISQQAISKHLATLERAGLIEKRRDGRQ 101 >gi|152968393|ref|YP_001364177.1| IclR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362910|gb|ABS05913.1| Transcriptional regulator IclR [Kineococcus radiotolerans SRS30216] Length = 254 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R+L + A P + +A + + ++++L L G V Sbjct: 13 ALRILSFMAAQQG-PVAAATLARSLDLPRSSVYRLLAELAGQGFV 56 >gi|323698038|ref|ZP_08109950.1| ribonuclease BN [Desulfovibrio sp. ND132] gi|323457970|gb|EGB13835.1| ribonuclease BN [Desulfovibrio desulfuricans ND132] Length = 461 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 10/94 (10%) Query: 10 GIRVLMYCAI--HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + +++ A H P + +I++ + + + L +AG TV G + Sbjct: 320 AVLMMVVLAKRFHEGAPLPSVEEISDGLMAPASLVSDLFRVLQQAGY--TVPAEVPGHEV 377 Query: 67 ---CRPADQITILDVVKAT--EESFFVAECFASH 95 R + +LDV++A E V F Sbjct: 378 FAPARELTDVRVLDVIRAINMEGERRVFAEFDEK 411 >gi|284031485|ref|YP_003381416.1| GntR family transcriptional regulator with aminotransferase domain-containing protein [Kribbella flavida DSM 17836] gi|283810778|gb|ADB32617.1| transcriptional regulator, GntR family with aminotransferase domain protein [Kribbella flavida DSM 17836] Length = 464 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 22/52 (42%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 G+R ++ + + ++ + + + +++ L G+VET G Sbjct: 13 GLRAVVQRSAPGEKLPSSRELVDRYRVGPGTVARVIAQLAAEGVVETRPGSG 64 >gi|260550503|ref|ZP_05824713.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406418|gb|EEW99900.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 257 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ I ++ + + I E +S+ ++ L+ LV A +++ + G Sbjct: 1 MAISSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I +LD V + T+ ++ F + ++ C L + L Sbjct: 59 SGDYTLG---SKIAVLDYVSRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107 >gi|302877104|ref|YP_003845737.1| transcriptional regulator, GntR family [Clostridium cellulovorans 743B] gi|307687799|ref|ZP_07630245.1| transcriptional regulator, GntR family protein [Clostridium cellulovorans 743B] gi|302579961|gb|ADL53973.1| transcriptional regulator, GntR family [Clostridium cellulovorans 743B] Length = 244 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++++ +S L + L L GIV+ +RG+ Sbjct: 42 ELSKSLGVSRSTLRQALALLQDDGIVKNIRGKG 74 >gi|253988656|ref|YP_003040012.1| regulatory protein, GntR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638020|emb|CAR66648.1| regulatory protein, gntr [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780106|emb|CAQ83267.1| regulatory protein, gntr [Photorhabdus asymbiotica] Length = 250 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 +++ +S + + L L +++T RGR GG +C+ +I Sbjct: 43 ELSRLLGVSPVTVRDALNTLRTRQLIDTRRGRHGGSFVCQAPVEI 87 >gi|168213020|ref|ZP_02638645.1| transcriptional regulator, GntR family [Clostridium perfringens CPE str. F4969] gi|170715330|gb|EDT27512.1| transcriptional regulator, GntR family [Clostridium perfringens CPE str. F4969] Length = 249 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A++ +S + L + L L G+V+ VRG+ Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNVRGKG 75 >gi|118465187|ref|YP_881256.1| ArsR family transcriptional regulator [Mycobacterium avium 104] gi|118166474|gb|ABK67371.1| transcriptional regulator, ArsR family protein [Mycobacterium avium 104] Length = 143 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68 +R+ + + + + ++ +A + + + + L+ L AG+V R GR RL Sbjct: 66 VRIAIVLQLRQSHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 124 Query: 69 PADQITILDVVKATEES 85 I + V A EE Sbjct: 125 HLAHIVVDAVAHAGEEP 141 >gi|113867403|ref|YP_725892.1| GntR family transcriptional regulator [Ralstonia eutropha H16] gi|113526179|emb|CAJ92524.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 249 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71 Q++E +S + ++ + L G VE+ +G G +L R D Sbjct: 28 GSRLPTGRQLSEQYGVSAAVIREVTEHLRSQGFVESRQGVGCTVRSRTGSAGFQLPREPD 87 >gi|29376199|ref|NP_815353.1| transcriptional repressor CodY [Enterococcus faecalis V583] gi|227518830|ref|ZP_03948879.1| transcriptional repressor CodY [Enterococcus faecalis TX0104] gi|227553447|ref|ZP_03983496.1| transcriptional repressor CodY [Enterococcus faecalis HH22] gi|229545745|ref|ZP_04434470.1| transcriptional repressor CodY [Enterococcus faecalis TX1322] gi|229549934|ref|ZP_04438659.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 29200] gi|255972717|ref|ZP_05423303.1| transcription pleiotropic repressor codY [Enterococcus faecalis T1] gi|255975769|ref|ZP_05426355.1| transcriptional repressor CodY [Enterococcus faecalis T2] gi|256762576|ref|ZP_05503156.1| transcription pleiotropic repressor codY [Enterococcus faecalis T3] gi|256853202|ref|ZP_05558572.1| transcriptional repressor CodY [Enterococcus faecalis T8] gi|256959056|ref|ZP_05563227.1| transcription pleiotropic repressor codY [Enterococcus faecalis DS5] gi|256961851|ref|ZP_05566022.1| transcriptional repressor CodY [Enterococcus faecalis Merz96] gi|256965048|ref|ZP_05569219.1| transcriptional repressor CodY [Enterococcus faecalis HIP11704] gi|257079087|ref|ZP_05573448.1| transcription pleiotropic repressor codY [Enterococcus faecalis JH1] gi|257082474|ref|ZP_05576835.1| transcription pleiotropic repressor codY [Enterococcus faecalis E1Sol] gi|257085106|ref|ZP_05579467.1| transcriptional repressor CodY [Enterococcus faecalis Fly1] gi|257086667|ref|ZP_05581028.1| transcription pleiotropic repressor codY [Enterococcus faecalis D6] gi|257089961|ref|ZP_05584322.1| transcriptional pleiotropic repressor codY [Enterococcus faecalis CH188] gi|257416170|ref|ZP_05593164.1| transcription pleiotropic repressor codY [Enterococcus faecalis AR01/DG] gi|257419372|ref|ZP_05596366.1| transcriptional repressor [Enterococcus faecalis T11] gi|257422534|ref|ZP_05599524.1| transcriptional repressor [Enterococcus faecalis X98] gi|293382916|ref|ZP_06628834.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis R712] gi|293389595|ref|ZP_06634052.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis S613] gi|294781642|ref|ZP_06746978.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis PC1.1] gi|307270941|ref|ZP_07552224.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX4248] gi|307273146|ref|ZP_07554392.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0855] gi|307277988|ref|ZP_07559072.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0860] gi|307289184|ref|ZP_07569140.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0109] gi|307291919|ref|ZP_07571788.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0411] gi|312899492|ref|ZP_07758822.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0470] gi|312903385|ref|ZP_07762565.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0635] gi|312907614|ref|ZP_07766605.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis DAPTO 512] gi|312910231|ref|ZP_07769078.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis DAPTO 516] gi|29343662|gb|AAO81423.1| transcriptional regulator CodY [Enterococcus faecalis V583] gi|227073743|gb|EEI11706.1| transcriptional repressor CodY [Enterococcus faecalis TX0104] gi|227177423|gb|EEI58395.1| transcriptional repressor CodY [Enterococcus faecalis HH22] gi|229304947|gb|EEN70943.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 29200] gi|229309195|gb|EEN75182.1| transcriptional repressor CodY [Enterococcus faecalis TX1322] gi|255963735|gb|EET96211.1| transcription pleiotropic repressor codY [Enterococcus faecalis T1] gi|255968641|gb|EET99263.1| transcriptional repressor CodY [Enterococcus faecalis T2] gi|256683827|gb|EEU23522.1| transcription pleiotropic repressor codY [Enterococcus faecalis T3] gi|256711661|gb|EEU26699.1| transcriptional repressor CodY [Enterococcus faecalis T8] gi|256949552|gb|EEU66184.1| transcription pleiotropic repressor codY [Enterococcus faecalis DS5] gi|256952347|gb|EEU68979.1| transcriptional repressor CodY [Enterococcus faecalis Merz96] gi|256955544|gb|EEU72176.1| transcriptional repressor CodY [Enterococcus faecalis HIP11704] gi|256987117|gb|EEU74419.1| transcription pleiotropic repressor codY [Enterococcus faecalis JH1] gi|256990504|gb|EEU77806.1| transcription pleiotropic repressor codY [Enterococcus faecalis E1Sol] gi|256993136|gb|EEU80438.1| transcriptional repressor CodY [Enterococcus faecalis Fly1] gi|256994697|gb|EEU81999.1| transcription pleiotropic repressor codY [Enterococcus faecalis D6] gi|256998773|gb|EEU85293.1| transcriptional pleiotropic repressor codY [Enterococcus faecalis CH188] gi|257157998|gb|EEU87958.1| transcription pleiotropic repressor codY [Enterococcus faecalis ARO1/DG] gi|257161200|gb|EEU91160.1| transcriptional repressor [Enterococcus faecalis T11] gi|257164358|gb|EEU94318.1| transcriptional repressor [Enterococcus faecalis X98] gi|291079581|gb|EFE16945.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis R712] gi|291081212|gb|EFE18175.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis S613] gi|294451338|gb|EFG19804.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis PC1.1] gi|295113042|emb|CBL31679.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus sp. 7L76] gi|306496917|gb|EFM66465.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0411] gi|306499893|gb|EFM69254.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0109] gi|306505385|gb|EFM74571.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0860] gi|306510131|gb|EFM79155.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0855] gi|306512439|gb|EFM81088.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX4248] gi|310626642|gb|EFQ09925.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis DAPTO 512] gi|310633261|gb|EFQ16544.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0635] gi|311289504|gb|EFQ68060.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis DAPTO 516] gi|311293362|gb|EFQ71918.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0470] gi|315027189|gb|EFT39121.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX2137] gi|315037056|gb|EFT48988.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0027] gi|315145124|gb|EFT89140.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX2141] gi|315147341|gb|EFT91357.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX4244] gi|315155675|gb|EFT99691.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0043] gi|315158154|gb|EFU02171.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0312] gi|315160542|gb|EFU04559.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0645] gi|315164093|gb|EFU08110.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX1302] gi|315168957|gb|EFU12974.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX1341] gi|315169809|gb|EFU13826.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX1342] gi|315575787|gb|EFU87978.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0309B] gi|315577629|gb|EFU89820.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0630] gi|315580439|gb|EFU92630.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0309A] gi|323480806|gb|ADX80245.1| GTP-sensing transcriptional repressor CodY [Enterococcus faecalis 62] gi|327535210|gb|AEA94044.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis OG1RF] gi|329571619|gb|EGG53300.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX1467] Length = 260 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 + + + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|16263024|ref|NP_435817.1| putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|14523678|gb|AAK65229.1| Transcriptional regulator, ArsR family [Sinorhizobium meliloti 1021] Length = 115 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--R 68 R+++ C + + ++ E + + L + L L +GIV+T R G++ RL + Sbjct: 39 RLMIVCTLVQGE-YSVGELEEKVDVHQPHLSQHLTVLRGSGIVQTRRDGKQIFYRLTGEK 97 Query: 69 PADQI-TILDVVKATEE 84 A I + D+ E+ Sbjct: 98 AARLIAALYDIFCVKED 114 >gi|15614452|ref|NP_242755.1| hypothetical protein BH1889 [Bacillus halodurans C-125] gi|10174507|dbj|BAB05608.1| BH1889 [Bacillus halodurans C-125] Length = 325 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 R++ + I+ + ++AE +S + + LQ L + G+ + + G GG Sbjct: 6 RLMELMMVINRKRRFTVKELAEEFSVSSRTILRDLQELSELGVPLYSEVGPHGGY 60 >gi|226314242|ref|YP_002774138.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226097192|dbj|BAH45634.1| putative transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 318 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 N Q+AE +SE + + ++ L +G+ V +RG GG L Sbjct: 14 QNHGRMTSKQLAERLEVSERTVHRDMEALSSSGVPVYALRGADGGWALAE 63 >gi|170742565|ref|YP_001771220.1| ArsR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196839|gb|ACA18786.1| transcriptional regulator, ArsR family [Methylobacterium sp. 4-46] Length = 229 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 8/97 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPA 70 R M A+ + ++A I+ L L +AG +V +GR RL PA Sbjct: 19 RAAMMQALMDGRALTAGELAGVAGITPQTASGHLAQLTRAGLLVVARQGRHRYHRLAGPA 78 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107 V E VA A P L Sbjct: 79 -------VAHLIEGLMQVAGEAAPGPPTGPRDARLRL 108 >gi|332669370|ref|YP_004452378.1| helix-turn-helix type 11 domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338408|gb|AEE44991.1| helix-turn-helix type 11 domain protein [Cellulomonas fimi ATCC 484] Length = 318 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++A+ +++ + + L + G V+ VRG G RL Sbjct: 25 ELADRLGVTDRTVRNDVARLRELGYPVDAVRGPGGRYRLG 64 >gi|311898470|dbj|BAJ30878.1| putative IclR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 273 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET---VRG 59 +++ D R L A + P + Q A + + ++L+ L + G V R Sbjct: 1 MSQTVD---RALTILASLGEGPASLEQAAARIGVHKSTALRLLRTLQEHGFVHRQSDQRY 57 Query: 60 RRGG--VRLCRPADQ-ITILDV 78 R GG L A + I I V Sbjct: 58 RLGGRLFALAHQALEGIDIRQV 79 >gi|309778334|ref|ZP_07673260.1| transcriptional regulator, DeoR family [Erysipelotrichaceae bacterium 3_1_53] gi|308913900|gb|EFP59714.1| transcriptional regulator, DeoR family [Erysipelotrichaceae bacterium 3_1_53] Length = 258 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +H + R+ ++E +SE + K L L G++ R GG L R Sbjct: 14 LHANGKVRVKDLSERFSVSEDLIRKDLSALEAKGLL---RKAYGGAVLIRE 61 >gi|296163102|ref|ZP_06845874.1| transcriptional regulator, IclR family [Burkholderia sp. Ch1-1] gi|295886648|gb|EFG66494.1| transcriptional regulator, IclR family [Burkholderia sp. Ch1-1] Length = 259 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 L+ ++IAEA I + L K+++ L G + V +G RL Sbjct: 21 LLELLAQWGREMSHTEIAEALDIPKSSLTKLIRNLTDRGYLRFVAETKG-YRLG 73 >gi|226365145|ref|YP_002782928.1| DeoR family transcriptional regulator [Rhodococcus opacus B4] gi|226243635|dbj|BAH53983.1| putative DeoR family transcriptional regulator [Rhodococcus opacus B4] Length = 322 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +++A+ I+ + + ++ L G V+ G GG +L A+ Sbjct: 22 SGAELADRLGITPRTVRRDVEKLRDLGYPVDATVGVGGGYQLGAGAE 68 >gi|118468357|ref|YP_886943.1| ArsR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169644|gb|ABK70540.1| ArsR-family protein transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 100 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 R+ + +H + +AE SE + + L+ L + G V + R GR RL Sbjct: 28 RLEILLVLHRAPGIFVGDLAEVLGRSENAVSQALRVLRQQGWVSSTRVGRAVSYRL 83 >gi|284047277|ref|YP_003397617.1| ArsR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951498|gb|ADB54242.1| transcriptional regulator, ArsR family [Conexibacter woesei DSM 14684] Length = 109 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72 + S +A IS + K L L AG+V + R GR RL Sbjct: 29 LSRQETVTASALAGELPISRQAVSKHLALLAGAGLVTSARAGRETLYRLTPDPLD 83 >gi|256377507|ref|YP_003101167.1| ArsR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921810|gb|ACU37321.1| transcriptional regulator, ArsR family [Actinosynnema mirum DSM 43827] Length = 119 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + ++ A +S+ + L+ L +AG+V++ R Sbjct: 43 LRLLSMIAARAGGEVCVCELTPAFDLSQPTVSHHLKLLREAGLVDSER 90 >gi|254392521|ref|ZP_05007700.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294811155|ref|ZP_06769798.1| ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326439727|ref|ZP_08214461.1| putative ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706187|gb|EDY51999.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294323754|gb|EFG05397.1| ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 331 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 L+ A H +++ ++ + + L KAG++ET R GG Sbjct: 266 ALLEAAAHTG---TTTELGRRVGVAPPVVSRHTAVLRKAGLLETRR--EGG 311 >gi|41408236|ref|NP_961072.1| hypothetical protein MAP2138 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396591|gb|AAS04455.1| hypothetical protein MAP_2138 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 141 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68 +R+ + + + + ++ +A + + + + L+ L AG+V R GR RL Sbjct: 64 VRIAIVLQLRQSHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 122 Query: 69 PADQITILDVVKATEES 85 I + V A EE Sbjct: 123 HLAHIVVDAVAHAGEEP 139 >gi|242371961|ref|ZP_04817535.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242350324|gb|EES41925.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 232 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75 AI N SQ+A+ +S+ + + + L + G+ V G+ GG ++ +I++ Sbjct: 13 AIQNSDKMTASQLAKEFNVSKRTILRDIDDLEEQGVKVYAQHGKLGGYQIKDAQSKISL 71 >gi|225388543|ref|ZP_03758267.1| hypothetical protein CLOSTASPAR_02279 [Clostridium asparagiforme DSM 15981] gi|225045388|gb|EEG55634.1| hypothetical protein CLOSTASPAR_02279 [Clostridium asparagiforme DSM 15981] Length = 326 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 ++ Q+ E +S ++K + L + G ++ VR + G RL + AD IT + Sbjct: 10 RESEGYLSGQQLCEQLGVSRTAVWKTIGQLKEEGYQIQAVRNK--GYRLVQGADVITRAE 67 Query: 78 VVKATE 83 +V + + Sbjct: 68 LVSSLD 73 >gi|153010652|ref|YP_001371866.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188] gi|151562540|gb|ABS16037.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188] Length = 116 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C + + + ++ EA I + L + L L +AGIVET R Sbjct: 39 RLMLACTL-AEREYSVGELEEALGIHQPTLSQQLGVLREAGIVETRR 84 >gi|228937238|ref|ZP_04099921.1| Transcriptional regulator, ArsR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822452|gb|EEM68398.1| Transcriptional regulator, ArsR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 368 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L + +A+ C +SE + + LQ L KA +V + + G L + Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKAKLVTSK--KDGKYVLYKSQ 351 Query: 71 DQI 73 I Sbjct: 352 KNI 354 >gi|229106646|ref|ZP_04236887.1| Transcriptional regulator, ArsR [Bacillus cereus Rock3-28] gi|228676828|gb|EEL31433.1| Transcriptional regulator, ArsR [Bacillus cereus Rock3-28] Length = 368 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L + +A+ C +SE + + LQ L KA +V + + G L + Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKAKLVTSK--KDGKYVLYKSQ 351 Query: 71 DQI 73 I Sbjct: 352 KNI 354 >gi|218549887|ref|YP_002383678.1| hypothetical protein EFER_2572 [Escherichia fergusonii ATCC 35469] gi|218357428|emb|CAQ90067.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 566 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRYAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|190410484|ref|YP_001965487.1| putative replication protein [Pediococcus acidilactici] gi|81176605|gb|ABB59533.1| putative replication protein [Pediococcus acidilactici] Length = 496 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|6690327|gb|AAF24084.1|AF117258_1 replication protein RepE [Staphylococcus aureus] Length = 151 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 31 MAYISEKSDVYKPYLVTTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 90 Query: 67 C 67 Sbjct: 91 A 91 >gi|197103127|ref|YP_002128409.1| putative replication protein [Enterococcus faecium] gi|256959338|ref|ZP_05563509.1| replication protein RepE [Enterococcus faecalis DS5] gi|269124238|ref|YP_003305348.1| AM3 [Enterococcus faecalis] gi|2745827|gb|AAB94754.1| replication protein E [Cloning vector pIL252] gi|2773393|gb|AAB96788.1| replication protein E [Cloning vector pIL253] gi|3023047|gb|AAC38603.1| RepE [Enterococcus faecalis] gi|31873068|gb|AAP60031.1| RepE [Cloning vector pMSP3535] gi|32140770|gb|AAP70043.1| replication protein E [Shuttle vector pLEIItd+KR''] gi|32185268|gb|AAP73798.1| replication protein E [Shuttle vector pLEIItd+KR''deltaORF] gi|34558746|gb|AAQ75103.1| RepE [Shuttle vector pMSP3535-FT] gi|34558753|gb|AAQ75109.1| RepE [Shuttle vector pMSP3535-RT] gi|196158949|emb|CAP70025.1| putative replication protein [Enterococcus faecium] gi|222478236|gb|ACM62693.1| RepE [Shuttle vector pMSP3535H3] gi|256949834|gb|EEU66466.1| replication protein RepE [Enterococcus faecalis DS5] gi|267822502|gb|ACY79530.1| AM3 [Enterococcus faecalis] Length = 496 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|68537101|ref|YP_251806.1| ArsR family transcriptional regulator [Corynebacterium jeikeium K411] gi|260579446|ref|ZP_05847327.1| transcriptional regulator (ArsR family) [Corynebacterium jeikeium ATCC 43734] gi|68264700|emb|CAI38188.1| putative transcriptional regulator (ArsR family) [Corynebacterium jeikeium K411] gi|258602416|gb|EEW15712.1| transcriptional regulator (ArsR family) [Corynebacterium jeikeium ATCC 43734] Length = 115 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 11/63 (17%) Query: 7 TDYG-----------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 T Y +++L + A P ++Q+ + +S+ + L+ L AG++ Sbjct: 29 TRYATLFKVLSDPARLQILSHLAAKGCEPISVNQLTDITGLSQPTVSHHLKRLTDAGLLR 88 Query: 56 TVR 58 R Sbjct: 89 KAR 91 >gi|305663532|ref|YP_003859820.1| hypothetical protein Igag_1128 [Ignisphaera aggregans DSM 17230] gi|304378101|gb|ADM27940.1| hypothetical protein Igag_1128 [Ignisphaera aggregans DSM 17230] Length = 128 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R LMY I+QIA+ I+ L+++ + L KAG+ +T+ L R Sbjct: 69 SVRTLMYLLYARAQGIPIAQIAKRLDIAHEQLYRLERLLAKAGLKDTI------YTLLR 121 >gi|108799433|ref|YP_639630.1| IclR family transcriptional regulator [Mycobacterium sp. MCS] gi|119868546|ref|YP_938498.1| regulatory proteins, IclR [Mycobacterium sp. KMS] gi|108769852|gb|ABG08574.1| transcriptional regulator, IclR family [Mycobacterium sp. MCS] gi|119694635|gb|ABL91708.1| transcriptional regulator, IclR family [Mycobacterium sp. KMS] Length = 262 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + D + VL A +IA A + + + +++ L G VE V GR G Sbjct: 13 QSVDRALVVLEILAKAGQAGVT--EIAAALDVHKSTVSRLIAVLESRGYVEQVSGR-GKY 69 Query: 65 RLC 67 RL Sbjct: 70 RLG 72 >gi|315649600|ref|ZP_07902685.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] gi|315275073|gb|EFU38448.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] Length = 318 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + + ++Y ++N+ S +AE +S+ +++ + + AGI V + +G Sbjct: 1 MKLER-----LISMIYMLLNNE-ILSASALAEKYNVSQRTIYRDIDAICAAGIPVVSYQG 54 Query: 60 RRGGV 64 GG Sbjct: 55 VNGGY 59 >gi|312951575|ref|ZP_07770471.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0102] gi|310630541|gb|EFQ13824.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0102] gi|315152403|gb|EFT96419.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecalis TX0031] Length = 260 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 + + + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|308174246|ref|YP_003920951.1| DtxR family transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307607110|emb|CBI43481.1| transcriptional regulator (DtxR family) [Bacillus amyloliquefaciens DSM 7] gi|328554192|gb|AEB24684.1| manganese transport transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328912584|gb|AEB64180.1| transcriptional regulator (DtxR family) [Bacillus amyloliquefaciens LL3] Length = 142 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|229191387|ref|ZP_04318372.1| transcriptional regulator [Bacillus cereus ATCC 10876] gi|228592069|gb|EEK49903.1| transcriptional regulator [Bacillus cereus ATCC 10876] Length = 219 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + + ++AE IS + + L+ L G+VE++ G Sbjct: 24 KAIVTLEVQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71 >gi|222107135|ref|YP_002547926.1| transcriptional regulator GntR family [Agrobacterium vitis S4] gi|221738314|gb|ACM39210.1| transcriptional regulator GntR family [Agrobacterium vitis S4] Length = 250 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H D IAE+ IS + + K + LV G++ RG Sbjct: 38 HGDALPAERDIAESAGISRVTVRKAIDDLVAEGLLVRRRGAG 79 >gi|220927593|ref|YP_002504502.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium cellulolyticum H10] gi|219997921|gb|ACL74522.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium cellulolyticum H10] Length = 326 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD-----QIT 74 D I++A +S ++K + L G V ++G R + D +I Sbjct: 11 EEDKYISGEDISKALNVSRTAVWKHINELRNDGYVIQSSSKKG-YRFLKAPDILDKREIN 69 Query: 75 I 75 I Sbjct: 70 I 70 >gi|297162522|gb|ADI12234.1| transcription regulator ArsR [Streptomyces bingchenggensis BCW-1] Length = 363 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 15 MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M H P S++A+ + + + + L+ L +AG++E+ R Sbjct: 292 MELCRHLLGEPITTSELAKRLGLDDTQVSRTLRQLREAGLIESER 336 >gi|251798695|ref|YP_003013426.1| ArsR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546321|gb|ACT03340.1| transcriptional regulator, ArsR family [Paenibacillus sp. JDR-2] Length = 305 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 15/77 (19%) Query: 1 MHLTKRTDYG-----------IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 M + TD+ +R+ ++ P + +A A +S + ++ L Sbjct: 1 MLIKTDTDHAWLPLYEALASPVRLNILDLLAAASEPMNVKDLAAALGLSSAIVTMHVRKL 60 Query: 49 VKAGIVET--VRGRRGG 63 +AGI++T VR ++GG Sbjct: 61 EQAGIIQTKMVR-KQGG 76 >gi|167461852|ref|ZP_02326941.1| hypothetical protein Plarl_04730 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384718|ref|ZP_08058386.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150417|gb|EFX43910.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 219 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + + ++AE IS + + L+ L G+VE++ G Sbjct: 24 KAIVTLELQPEQRLNDKELAEKFGISRTPVREALKRLEDEGLVESIPG 71 >gi|254304387|ref|ZP_04971745.1| transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324579|gb|EDK89829.1| transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 475 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K+++ L + G + +++G+ Sbjct: 32 ENDKFFSVRQISIKYEVNLNTVLKVIRMLEEEGYLYSIKGKG 73 >gi|46204549|ref|ZP_00209460.1| COG2378: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 345 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++A + + + + L + G V RGR GG RL Sbjct: 25 ELAARLGVDARTVRRDVDRLRELGYHVVATRGRVGGYRL 63 >gi|299536609|ref|ZP_07049921.1| putative transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728093|gb|EFI68656.1| putative transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 319 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++ +IAE I+ +++ + L +G+ + G GG L Sbjct: 14 LNSGRKITAKEIAEKLEINIRSVYRYINSLSASGVPIIAETGHHGGYTL 62 >gi|227486116|ref|ZP_03916432.1| transcriptional repressor [Anaerococcus lactolyticus ATCC 51172] gi|227235880|gb|EEI85895.1| transcriptional repressor [Anaerococcus lactolyticus ATCC 51172] Length = 100 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ D P + IAE+ +S+ + L+ L K +V++ R Sbjct: 29 MRIMYRL---FDGPVSVGDIAESLDMSQSAISHQLRNLKKNKLVKSER 73 >gi|194365137|ref|YP_002027747.1| Helix-turn-helix type 11 domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194347941|gb|ACF51064.1| Helix-turn-helix type 11 domain protein [Stenotrophomonas maltophilia R551-3] Length = 322 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M T R+L A+ +++AE + + + ++ L + G V+ Sbjct: 1 MRHTAH-----RLLRLIALLQARRQWSGAELAERMGVDRRSIRRDIERLRELGYPVQASA 55 Query: 59 GRRGGVRLC 67 G GG +L Sbjct: 56 GVGGGYQLG 64 >gi|194292466|ref|YP_002008373.1| DNA-binding protein [Cupriavidus taiwanensis LMG 19424] gi|193226370|emb|CAQ72319.1| putative DNA-binding protein [Cupriavidus taiwanensis LMG 19424] Length = 86 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 ++VL P +++IA+ + L ++L L AG+ Sbjct: 14 LQVLCQAGRDGGGPWSLARIAKRSGLPMSVLRRVLTQLQAAGL 56 >gi|218232690|ref|YP_002369007.1| manganese transport transcriptional regulator [Bacillus cereus B4264] gi|226704806|sp|B7HB75|MNTR_BACC4 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|218160647|gb|ACK60639.1| iron-dependent repressor family protein [Bacillus cereus B4264] Length = 142 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|116513072|ref|YP_811979.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108726|gb|ABJ73866.1| Transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] Length = 145 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM A + ++IAE IS + K L+ L + ++++ R Sbjct: 41 HILMILAA---EVSTNARIAEQLKISPAAVTKALKKLQEQELIKSSR 84 >gi|15643738|ref|NP_228786.1| hypothetical protein TM0978 [Thermotoga maritima MSB8] gi|222100574|ref|YP_002535142.1| SirA family protein [Thermotoga neapolitana DSM 4359] gi|4981517|gb|AAD36057.1|AE001760_7 conserved hypothetical protein [Thermotoga maritima MSB8] gi|221572964|gb|ACM23776.1| SirA family protein [Thermotoga neapolitana DSM 4359] Length = 184 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ +T + +LM D S++AE I+ ++ L +VKAGI++ V+ G Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVVKTPEG 68 >gi|18313495|ref|NP_560162.1| hypothetical protein PAE2655 [Pyrobaculum aerophilum str. IM2] gi|18161034|gb|AAL64344.1| conserved within P. aerophilum [Pyrobaculum aerophilum str. IM2] Length = 186 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 13 VLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRL 66 VLMY A + + I E + KIL L AG++E GRR RL Sbjct: 11 VLMYMAWRHLICGFDYVTVKDMVSDLEIPERTVRKILAQLRDAGLLEMRTSGRRIKYRL 69 >gi|330470344|ref|YP_004408087.1| helix-turn-helix type 11 domain-containing protein [Verrucosispora maris AB-18-032] gi|328813315|gb|AEB47487.1| helix-turn-helix type 11 domain protein [Verrucosispora maris AB-18-032] Length = 327 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++A +SE +++ + L AG+ V RGR GG RL Sbjct: 14 QAREAMTAAELARELEVSERTVYRDIVALSAAGVPVYADRGRAGGYRL 61 >gi|323698729|ref|ZP_08110641.1| regulatory protein ArsR [Desulfovibrio sp. ND132] gi|323458661|gb|EGB14526.1| regulatory protein ArsR [Desulfovibrio desulfuricans ND132] Length = 116 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +RVL H + + A + + + + + L G V + R G+ L P Sbjct: 17 LRVLRLL-DHGERCVC--DLMAALDLPQSTVSRHMSFLRNGGWVSSRRKGKWVYYTLAEP 73 Query: 70 ADQIT--ILDVVK 80 D I +L++++ Sbjct: 74 QDAIQSEVLEILR 86 >gi|319793245|ref|YP_004154885.1| helix-turn-helix type 11 domain-containing protein [Variovorax paradoxus EPS] gi|315595708|gb|ADU36774.1| helix-turn-helix type 11 domain-containing protein [Variovorax paradoxus EPS] Length = 347 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 1 MH--LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETV 57 M L+ IR+L + +AE I+E L + + L G V++ Sbjct: 1 MRPMLSASARL-IRLLSL--FQAQRAWTGAGLAERLEITERTLRRDVDRLRTLGYTVDST 57 Query: 58 RGRRGGVRLC 67 G GG RL Sbjct: 58 SGVAGGYRLG 67 >gi|259508495|ref|ZP_05751395.1| transcription repressor [Corynebacterium efficiens YS-314] gi|259163907|gb|EEW48461.1| transcription repressor [Corynebacterium efficiens YS-314] Length = 86 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + +L H D + +A+A IS + ++ LV A +V Sbjct: 12 LSILYLITTHPDGRVSSNALAQALGISAPTVTHHMKKLVSARLVT 56 >gi|256829713|ref|YP_003158441.1| ArsR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578889|gb|ACU90025.1| transcriptional regulator, ArsR family [Desulfomicrobium baculatum DSM 4028] Length = 109 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 +R+LM+ ++QIAE +S+ + L+ L +A +V+ RG + RP Sbjct: 30 LRILMHV---GTGRLSVTQIAEELGLSQPLVSHHLKELKRALLVDVERRGPFIHYGISRP 86 Query: 70 ADQITILDVVKAT 82 +LDV+++ Sbjct: 87 ----EVLDVLRSI 95 >gi|297582511|ref|YP_003698291.1| GntR family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297140968|gb|ADH97725.1| transcriptional regulator, GntR family [Bacillus selenitireducens MLS10] Length = 239 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + P ++E IS + + + + LV G++ +GR Sbjct: 27 LQPGDPLPSERDLSETYGISRMTIRQAMTNLVNEGLLTRSKGRG 70 >gi|154686715|ref|YP_001421876.1| manganese transport transcriptional regulator [Bacillus amyloliquefaciens FZB42] gi|167011806|sp|A7Z6L9|MNTR_BACA2 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|154352566|gb|ABS74645.1| MntR [Bacillus amyloliquefaciens FZB42] Length = 142 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|21241147|ref|NP_640729.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21106451|gb|AAM35265.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 296 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 52 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 105 Query: 63 -GVRL 66 G L Sbjct: 106 RGYVL 110 >gi|150391546|ref|YP_001321595.1| helix-turn-helix, type 11 domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951408|gb|ABR49936.1| Helix-turn-helix, type 11 domain protein [Alkaliphilus metalliredigens QYMF] Length = 115 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++E +S+ +++ L+ L AGI V T +GRRGG+ L Sbjct: 13 SKGRVTAKELSERFEVSQRTIYRDLESLSIAGIPVYTEKGRRGGISL 59 >gi|311064945|ref|YP_003971671.1| transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|310867265|gb|ADP36634.1| Putative transcriptional regulator [Bifidobacterium bifidum PRL2010] Length = 201 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +R+L + + P + QIAE S + L+ L KAG V G Sbjct: 37 LRILTVMS--DTKPVTVGQIAEQLGESAGTVSYHLKQLEKAGFVTQTPSPDG 86 >gi|310826092|ref|YP_003958449.1| hypothetical protein ELI_0470 [Eubacterium limosum KIST612] gi|308737826|gb|ADO35486.1| hypothetical protein ELI_0470 [Eubacterium limosum KIST612] Length = 122 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ D + ++A ++ + K L L + G+V R Sbjct: 21 LRIVSGLFAPGDKLPSVREMAAEASVNPNTMQKALSELERTGLVYAQR 68 >gi|296128170|ref|YP_003635420.1| regulatory protein ArsR [Cellulomonas flavigena DSM 20109] gi|296019985|gb|ADG73221.1| regulatory protein ArsR [Cellulomonas flavigena DSM 20109] Length = 225 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR 61 VL + D + +A + + + + LV AG+V T RGRR Sbjct: 16 VLRDLVLSADGTRTAADLARSTGHPPSSVAREVSRLVDAGLVRTTPRGRR 65 >gi|86749387|ref|YP_485883.1| IclR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86572415|gb|ABD06972.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris HaA2] Length = 288 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 G+R L+ P +S +A+AC + +IL L K+G V + Sbjct: 50 GLR-LIEVFGAERRPMTLSDVAKACGLPRATARRILLTLQKSGFVTS 95 >gi|78060358|ref|YP_366933.1| GntR family transcriptional regulator [Burkholderia sp. 383] gi|77964908|gb|ABB06289.1| transcriptional regulator, GntR family [Burkholderia sp. 383] Length = 286 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++AE +S + + + L + G++E+ RG Sbjct: 72 GESLPPERELAEHFQVSRDTVRRAIDRLTRQGLIESRRGAG 112 >gi|24215607|ref|NP_713088.1| putative transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|24196760|gb|AAN50106.1| putative transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] Length = 317 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 R+L + + +A+ +SE + + ++ L +GI V RG +GG L Sbjct: 5 RLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVFAERGSKGGWELSE 63 >gi|11499852|ref|NP_071096.1| hypothetical protein AF2271 [Archaeoglobus fulgidus DSM 4304] gi|2648262|gb|AAB88995.1| predicted coding region AF_2271 [Archaeoglobus fulgidus DSM 4304] Length = 255 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P I +I+E IS + + L+ L + G+VE Sbjct: 23 SPKSIKEISELTGISPPLVSRHLKKLGELGLVE 55 >gi|163941963|ref|YP_001646847.1| manganese transport transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|226704808|sp|A9VGY7|MNTR_BACWK RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|163864160|gb|ABY45219.1| iron (metal) dependent repressor, DtxR family [Bacillus weihenstephanensis KBAB4] Length = 142 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|119387506|ref|YP_918540.1| phosphonates metabolism transcriptional regulator PhnF [Paracoccus denitrificans PD1222] gi|119378081|gb|ABL72844.1| transcriptional regulator, GntR family [Paracoccus denitrificans PD1222] Length = 243 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 D + +A ++ + L L +AG V + RG GV + + Sbjct: 26 GDKLPSEAVLAARFGVNRHTVRHALAALAEAGTVRSRRGA--GVFVAARPTDYPLG 79 >gi|332981873|ref|YP_004463314.1| biotin/acetyl-CoA-carboxylase ligase [Mahella australiensis 50-1 BON] gi|332699551|gb|AEE96492.1| biotin/acetyl-CoA-carboxylase ligase [Mahella australiensis 50-1 BON] Length = 330 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL-CRP- 69 VL I+ + IS ++K + L + G V E+ R G +L P Sbjct: 6 VLNMLLSSQGGFVSGEDISRSLNISRTAVWKYINELKEMGYVIESH--SRAGYKLIACPD 63 Query: 70 ---ADQITIL 76 D+I++ Sbjct: 64 VLWPDEISLG 73 >gi|326941984|gb|AEA17880.1| manganese transport transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 142 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|317123977|ref|YP_004098089.1| IclR family transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588065|gb|ADU47362.1| transcriptional regulator, IclR family [Intrasporangium calvum DSM 43043] Length = 290 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPA 70 L+ +S++A++ + + +I+Q LV G V + R L Sbjct: 35 LLEAMADAGGIATLSELAKSTGLPMPTIHRIVQSLVAGGYVRKDVSHR-----YALG--P 87 Query: 71 DQITILDV 78 I + +V Sbjct: 88 RLIRLGEV 95 >gi|295106699|emb|CBL04242.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 140 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---CRPADQI-TIL 76 D + +A ++ + K+ L + G +++ R R+G L +P I T Sbjct: 38 GDQLPTVRGLAADVEVNYNTVSKVYMSLEQDGYIQSKR-RQGAFVLDVSGKPGVSISTTA 96 Query: 77 DVVKATEESFFVAECFA 93 ++V ++ CF Sbjct: 97 EIVT----QEYLKRCFE 109 >gi|293413700|ref|ZP_06656349.1| ybaE protein [Escherichia coli B185] gi|291433758|gb|EFF06731.1| ybaE protein [Escherichia coli B185] Length = 566 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQ 72 + +S++AE C SE + +L+ +AG +E + RG+RG +R + Sbjct: 16 LSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPES 75 Query: 73 ITILDVVKATE 83 + + KA E Sbjct: 76 LRNAMMEKALE 86 >gi|251797532|ref|YP_003012263.1| transcriptional regulator, IclR family [Paenibacillus sp. JDR-2] gi|247545158|gb|ACT02177.1| transcriptional regulator, IclR family [Paenibacillus sp. JDR-2] Length = 257 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 I +L Y + +++I+ + + +IL L + G V Sbjct: 7 AIHILDYLVPQGSEKEISVTEISRELDMPVQSVHRILASLSEHGFV 52 >gi|228992951|ref|ZP_04152875.1| Transcriptional regulator mntR [Bacillus pseudomycoides DSM 12442] gi|229006545|ref|ZP_04164181.1| Transcriptional regulator mntR [Bacillus mycoides Rock1-4] gi|228754684|gb|EEM04093.1| Transcriptional regulator mntR [Bacillus mycoides Rock1-4] gi|228766808|gb|EEM15447.1| Transcriptional regulator mntR [Bacillus pseudomycoides DSM 12442] Length = 163 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93 Query: 66 L 66 L Sbjct: 94 L 94 >gi|291295685|ref|YP_003507083.1| transcriptional regulator, IclR family [Meiothermus ruber DSM 1279] gi|290470644|gb|ADD28063.1| transcriptional regulator, IclR family [Meiothermus ruber DSM 1279] Length = 880 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCR 68 +RVL Y A H + +++A S + +L LV G E R G RL + Sbjct: 13 ALRVLAYLAEHPEG-VEAARLAAFLGKSLSTAYALLASLVSEGFAE----RDGSTYRLSK 67 Query: 69 PA 70 A Sbjct: 68 NA 69 >gi|19704750|ref|NP_604312.1| aminotransferase class-I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328478|ref|ZP_06870998.1| GntR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19715074|gb|AAL95611.1| Transcriptional regulator, GntR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154384|gb|EFG95182.1| GntR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 475 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + QI+ ++ + K+++ L + G + +++G+ Sbjct: 32 ENDKFYSVRQISIKYKVNLNTVLKVIRMLEEEGYLYSIKGKG 73 >gi|78045943|ref|YP_362118.1| IclR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034373|emb|CAJ22018.1| transcriptional regulator, IclR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 302 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 58 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 111 Query: 63 -GVRL 66 G L Sbjct: 112 RGYVL 116 >gi|302545543|ref|ZP_07297885.1| putative regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302463161|gb|EFL26254.1| putative regulatory protein [Streptomyces himastatinicus ATCC 53653] Length = 355 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 S++A +S + L +AG+V T+R +GG L Sbjct: 275 GGGCTTSELARRVGVSLASASQHASVLREAGLVHTLR--QGGAVL 317 >gi|298387240|ref|ZP_06996793.1| DNA-binding transcriptional activator FucR [Bacteroides sp. 1_1_14] gi|298259909|gb|EFI02780.1| DNA-binding transcriptional activator FucR [Bacteroides sp. 1_1_14] Length = 331 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 REGDSLPSINQLSAEYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|320010783|gb|ADW05633.1| ROK family protein [Streptomyces flavogriseus ATCC 33331] Length = 386 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV---RGRRG 62 R + + P ++I E +S+ ++L L AG+V + RGR G Sbjct: 18 RAALDL-LVAQGPLTRTRIGELTGLSKPTASQLLARLEDAGLVRSTGSQRGRPG 70 >gi|253568730|ref|ZP_04846141.1| FucR [Bacteroides sp. 1_1_6] gi|251842803|gb|EES70883.1| FucR [Bacteroides sp. 1_1_6] Length = 331 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 REGDSLPSINQLSAEYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|269958107|ref|YP_003327896.1| Helix-turn-helix type 11 domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269306788|gb|ACZ32338.1| Helix-turn-helix type 11 domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 320 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++A+ +++ + + L + G V T RG G RL Sbjct: 22 SGQELAQRLGVTDRTVRNDVARLRELGYPVHTTRGPGGRYRLG 64 >gi|29346682|ref|NP_810185.1| FucR [Bacteroides thetaiotaomicron VPI-5482] gi|6015980|gb|AAF01483.1|AF137263_2 FucR [Bacteroides thetaiotaomicron] gi|29338579|gb|AAO76379.1| FucR [Bacteroides thetaiotaomicron VPI-5482] Length = 331 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I+Q++ +S +FK L + G++++ G+ Sbjct: 34 REGDSLPSINQLSAEYGVSRDTVFKAFLDLRERGLIDSTPGKG 76 >gi|88800929|ref|ZP_01116481.1| hypothetical protein MED297_04644 [Reinekea sp. MED297] gi|88776304|gb|EAR07527.1| hypothetical protein MED297_04644 [Reinekea sp. MED297] Length = 248 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +Y A+ P I IA+ I+ ++L+ + + G+V Sbjct: 19 IYLALLESGPASIRDIADRAGINRGTTHELLKRMQQKGVV 58 >gi|332669215|ref|YP_004452223.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484] gi|332338253|gb|AEE44836.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484] Length = 110 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 RVL+ + P S +A+A +S + L L G+VE+V GRR RL P Sbjct: 26 RVLLAL---REAPAYPSDLADALGVSRQVMSNQLACLRGCGLVESVPDGRRTWYRLADP 81 >gi|297197906|ref|ZP_06915303.1| ArsR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197717151|gb|EDY61185.1| ArsR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 125 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + + +S+ + L+ L +AG+V + R Sbjct: 46 LRLLSLIASHEGGEACVCDLTDPFDVSQPTISHHLKVLREAGLVGSER 93 >gi|125625160|ref|YP_001033643.1| transcriptional regulator of the zit operon [Lactococcus lactis subsp. cremoris MG1363] gi|124493968|emb|CAL98965.1| transcriptional regulator of the zit operon [Lactococcus lactis subsp. cremoris MG1363] gi|300071969|gb|ADJ61369.1| transcriptional regulator of the zit operon [Lactococcus lactis subsp. cremoris NZ9000] Length = 145 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM A + ++IAE IS + K L+ L + ++++ R Sbjct: 41 HILMILAA---EVSTNARIAEQLKISPAAVTKALKKLQEQELIKSSR 84 >gi|325916833|ref|ZP_08179084.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas vesicatoria ATCC 35937] gi|325536984|gb|EGD08729.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas vesicatoria ATCC 35937] Length = 286 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H+ +SQI+ IS + ++L L K G V G +G Sbjct: 42 MTSLGR-GLVVLSVFAQHS-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95 Query: 63 -GVRL 66 G L Sbjct: 96 RGYVL 100 >gi|317406130|gb|EFV86387.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 245 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RVL A +D P I+ +AE +++ L++ + L + G V G G Sbjct: 11 RVLYVLATLARHDGPLSIAALAEKTGLAQSTLYRQVALLKRWGFVAEHEGEYG 63 >gi|315645218|ref|ZP_07898343.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] gi|315279260|gb|EFU42566.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] Length = 318 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L + + N +AE +SE + + ++ L AGI V RG GG L Sbjct: 5 RLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSHGGWVL 61 >gi|313103516|pdb|2XRN|A Chain A, Crystal Structure Of Ttgv gi|313103517|pdb|2XRN|B Chain B, Crystal Structure Of Ttgv gi|313103518|pdb|2XRO|A Chain A, Crystal Structure Of Ttgv In Complex With Its Dna Operator gi|313103519|pdb|2XRO|B Chain B, Crystal Structure Of Ttgv In Complex With Its Dna Operator gi|313103520|pdb|2XRO|E Chain E, Crystal Structure Of Ttgv In Complex With Its Dna Operator gi|313103521|pdb|2XRO|F Chain F, Crystal Structure Of Ttgv In Complex With Its Dna Operator Length = 241 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ H + ++ IA+ + + +I+ L + +VE + G GG RL Sbjct: 11 IMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGFRLG 63 >gi|295133403|ref|YP_003584079.1| regulatory protein GntR, HTH [Zunongwangia profunda SM-A87] gi|294981418|gb|ADF51883.1| regulatory protein GntR, HTH [Zunongwangia profunda SM-A87] Length = 346 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 Y +I P I++I+E +S + K L I+ +V+G+ G + + Sbjct: 31 YLSIDQKIP-SINEISEEFYLSRDTVEKAYNILKDQKIIISVKGK--GYYIAK 80 >gi|262202604|ref|YP_003273812.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085951|gb|ACY21919.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247] Length = 123 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I+ + +S+ + L+ L AG+++ R Sbjct: 39 LRLLSLVASHAGGEACVCDISASFDVSQPTISHHLKVLRSAGLLDCER 86 >gi|218883343|ref|YP_002427725.1| Putative transcriptional regulator, AsnC family [Desulfurococcus kamchatkensis 1221n] gi|218764959|gb|ACL10358.1| Putative transcriptional regulator, AsnC family [Desulfurococcus kamchatkensis 1221n] Length = 151 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 14/105 (13%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--LCR 68 +++L Y H+ SQ+++ + + KIL L + G VE GG + L + Sbjct: 11 VQILKYLVRHSGQEIYQSQLSKDLNLDPRIISKILIKLEELGSVERTSITHGGRKTFLVK 70 Query: 69 PADQITILDVVKATEE----SFFVAECFAS----HKIDCPLVGSC 105 P + +++ EE + + E F I CP + C Sbjct: 71 PVRE----KLIRIMEEAGIDPYSLEEIFNDVADIPCIKCPYIYKC 111 >gi|206971362|ref|ZP_03232313.1| iron-dependent repressor family protein [Bacillus cereus AH1134] gi|206734134|gb|EDZ51305.1| iron-dependent repressor family protein [Bacillus cereus AH1134] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|163853297|ref|YP_001641340.1| regulatory protein Crp [Methylobacterium extorquens PA1] gi|218532154|ref|YP_002422970.1| Crp/Fnr family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240140707|ref|YP_002965187.1| putative transcriptional regulator, Crp/Fnr family [Methylobacterium extorquens AM1] gi|254563218|ref|YP_003070313.1| Crp/Fnr family transcriptional regulator [Methylobacterium extorquens DM4] gi|163664902|gb|ABY32269.1| regulatory protein Crp [Methylobacterium extorquens PA1] gi|218524457|gb|ACK85042.1| putative transcriptional regulator, Crp/Fnr family [Methylobacterium chloromethanicum CM4] gi|240010684|gb|ACS41910.1| putative transcriptional regulator, Crp/Fnr family [Methylobacterium extorquens AM1] gi|254270496|emb|CAX26499.1| putative transcriptional regulator, Crp/Fnr family [Methylobacterium extorquens DM4] Length = 253 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 11 IRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R L+ D P +A + +L +IL+ L + G++E RGR Sbjct: 156 LRWLLTLQDRLDNNVLPITQESLAAMLGVQRTYLTRILRMLQQQGLIEVGRGR 208 >gi|120405818|ref|YP_955647.1| MarR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958636|gb|ABM15641.1| transcriptional regulator, MarR family [Mycobacterium vanbaalenii PYR-1] Length = 363 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R+++ A P +S++AEA +S L L G V + + Sbjct: 292 RLVVELA-RGSEPRSVSELAEAVGVSNQSASAALGRLAAEGWVTSSKAAG 340 >gi|111022640|ref|YP_705612.1| hypothetical protein RHA1_ro05675 [Rhodococcus jostii RHA1] gi|110822170|gb|ABG97454.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 332 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +++A+ I+ + + ++ L G V+ G GG +L A+ Sbjct: 32 SGAELADRLGITPRTVRRDVEKLRDLGYPVDATVGVGGGYQLGAGAE 78 >gi|78047870|ref|YP_364045.1| ArsR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|121593760|ref|YP_985656.1| ArsR family transcriptional regulator [Acidovorax sp. JS42] gi|78036300|emb|CAJ23991.1| transcriptional regulator, ArsR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|120605840|gb|ABM41580.1| transcriptional regulator, ArsR family [Acidovorax sp. JS42] Length = 227 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKAT 82 + ++AE I+ + LQ L +AG V+T R G+ RL + VV A Sbjct: 41 SVEKLAELTGITVANASQHLQHLKRAGCVQTRRDGKHMLYRLGPGP----LASVVVAL 94 >gi|30264279|ref|NP_846656.1| manganese transport transcriptional regulator [Bacillus anthracis str. Ames] gi|42783323|ref|NP_980570.1| manganese transport transcriptional regulator [Bacillus cereus ATCC 10987] gi|47529721|ref|YP_021070.1| manganese transport transcriptional regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187106|ref|YP_030358.1| manganese transport transcriptional regulator [Bacillus anthracis str. Sterne] gi|49478577|ref|YP_038265.1| manganese transport transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141292|ref|YP_085537.1| manganese transport transcriptional regulator [Bacillus cereus E33L] gi|165872975|ref|ZP_02217597.1| iron-dependent repressor family protein [Bacillus anthracis str. A0488] gi|167634486|ref|ZP_02392806.1| iron-dependent repressor family protein [Bacillus anthracis str. A0442] gi|167638583|ref|ZP_02396859.1| iron-dependent repressor family protein [Bacillus anthracis str. A0193] gi|170687379|ref|ZP_02878596.1| iron-dependent repressor family protein [Bacillus anthracis str. A0465] gi|170709030|ref|ZP_02899460.1| iron-dependent repressor family protein [Bacillus anthracis str. A0389] gi|177654824|ref|ZP_02936581.1| iron-dependent repressor family protein [Bacillus anthracis str. A0174] gi|190565919|ref|ZP_03018838.1| iron-dependent repressor family protein [Bacillus anthracis Tsiankovskii-I] gi|196034810|ref|ZP_03102217.1| iron-dependent repressor family protein [Bacillus cereus W] gi|196041573|ref|ZP_03108865.1| iron-dependent repressor family protein [Bacillus cereus NVH0597-99] gi|196046344|ref|ZP_03113570.1| iron-dependent repressor family protein [Bacillus cereus 03BB108] gi|206976254|ref|ZP_03237162.1| iron-dependent repressor family protein [Bacillus cereus H3081.97] gi|217961693|ref|YP_002340263.1| manganese transport transcriptional regulator [Bacillus cereus AH187] gi|218905340|ref|YP_002453174.1| iron-dependent repressor family protein [Bacillus cereus AH820] gi|222097651|ref|YP_002531708.1| manganese transport transcriptional regulator [Bacillus cereus Q1] gi|225866185|ref|YP_002751563.1| iron-dependent repressor family protein [Bacillus cereus 03BB102] gi|227816979|ref|YP_002816988.1| iron-dependent repressor family protein [Bacillus anthracis str. CDC 684] gi|229603034|ref|YP_002868497.1| iron-dependent repressor family protein [Bacillus anthracis str. A0248] gi|254683968|ref|ZP_05147828.1| manganese transport transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254721802|ref|ZP_05183591.1| manganese transport transcriptional regulator [Bacillus anthracis str. A1055] gi|254736316|ref|ZP_05194022.1| manganese transport transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254741354|ref|ZP_05199041.1| manganese transport transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254754012|ref|ZP_05206047.1| manganese transport transcriptional regulator [Bacillus anthracis str. Vollum] gi|254757883|ref|ZP_05209910.1| manganese transport transcriptional regulator [Bacillus anthracis str. Australia 94] gi|301055697|ref|YP_003793908.1| iron-dependent repressor family protein [Bacillus anthracis CI] gi|38604750|sp|Q81M27|MNTR_BACAN RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|81394859|sp|Q6HDW1|MNTR_BACHK RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|81409199|sp|Q730Y9|MNTR_BACC1 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|81686261|sp|Q634Y0|MNTR_BACCZ RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|226704804|sp|B7JMS8|MNTR_BACC0 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|226704807|sp|B7HNW6|MNTR_BACC7 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|254811530|sp|C3P8B4|MNTR_BACAA RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|254811531|sp|C3LKN2|MNTR_BACAC RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|254811532|sp|C1ERS6|MNTR_BACC3 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|254811533|sp|B9IXJ8|MNTR_BACCQ RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|30258924|gb|AAP28142.1| iron-dependent repressor family protein [Bacillus anthracis str. Ames] gi|42739251|gb|AAS43178.1| iron-dependent repressor family protein [Bacillus cereus ATCC 10987] gi|47504869|gb|AAT33545.1| iron-dependent repressor family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181033|gb|AAT56409.1| iron-dependent repressor family protein [Bacillus anthracis str. Sterne] gi|49330133|gb|AAT60779.1| iron-dependent repressor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974761|gb|AAU16311.1| iron-dependent repressor [Bacillus cereus E33L] gi|164711258|gb|EDR16813.1| iron-dependent repressor family protein [Bacillus anthracis str. A0488] gi|167513431|gb|EDR88801.1| iron-dependent repressor family protein [Bacillus anthracis str. A0193] gi|167529938|gb|EDR92673.1| iron-dependent repressor family protein [Bacillus anthracis str. A0442] gi|170126057|gb|EDS94954.1| iron-dependent repressor family protein [Bacillus anthracis str. A0389] gi|170668574|gb|EDT19320.1| iron-dependent repressor family protein [Bacillus anthracis str. A0465] gi|172080485|gb|EDT65571.1| iron-dependent repressor family protein [Bacillus anthracis str. A0174] gi|190562838|gb|EDV16804.1| iron-dependent repressor family protein [Bacillus anthracis Tsiankovskii-I] gi|195992349|gb|EDX56310.1| iron-dependent repressor family protein [Bacillus cereus W] gi|196022814|gb|EDX61495.1| iron-dependent repressor family protein [Bacillus cereus 03BB108] gi|196027561|gb|EDX66176.1| iron-dependent repressor family protein [Bacillus cereus NVH0597-99] gi|206745450|gb|EDZ56849.1| iron-dependent repressor family protein [Bacillus cereus H3081.97] gi|217065620|gb|ACJ79870.1| iron-dependent repressor family protein [Bacillus cereus AH187] gi|218537156|gb|ACK89554.1| iron-dependent repressor family protein [Bacillus cereus AH820] gi|221241709|gb|ACM14419.1| iron-dependent repressor [Bacillus cereus Q1] gi|225787220|gb|ACO27437.1| iron-dependent repressor family protein [Bacillus cereus 03BB102] gi|227003331|gb|ACP13074.1| iron-dependent repressor family protein [Bacillus anthracis str. CDC 684] gi|229267442|gb|ACQ49079.1| iron-dependent repressor family protein [Bacillus anthracis str. A0248] gi|300377866|gb|ADK06770.1| iron-dependent repressor family protein [Bacillus cereus biovar anthracis str. CI] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|47569463|ref|ZP_00240144.1| iron-dependent repressor [Bacillus cereus G9241] gi|47553878|gb|EAL12248.1| iron-dependent repressor [Bacillus cereus G9241] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|324328118|gb|ADY23378.1| manganese transport transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|313905421|ref|ZP_07838786.1| Helix-turn-helix type 11 domain protein [Eubacterium cellulosolvens 6] gi|313469744|gb|EFR65081.1| Helix-turn-helix type 11 domain protein [Eubacterium cellulosolvens 6] Length = 304 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 10/61 (16%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79 + ++AE +S + + ++ L KAGI + T +G GG I+I+D Sbjct: 15 QEEKTTAPELAERFEVSRRTINRDIEDLCKAGIPIRTAQGTGGG---------ISIMDGY 65 Query: 80 K 80 + Sbjct: 66 R 66 >gi|294812240|ref|ZP_06770883.1| Putative DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326440919|ref|ZP_08215653.1| DeoR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294324839|gb|EFG06482.1| Putative DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 327 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + N +++A +SE + + L +AG+ V RGR GG RL Sbjct: 9 MVLLLQNRPSMTGAELARELEVSERTVTRDALALSEAGVPVHADRGRAGGYRL 61 >gi|228998997|ref|ZP_04158579.1| Transcriptional regulator mntR [Bacillus mycoides Rock3-17] gi|228760614|gb|EEM09578.1| Transcriptional regulator mntR [Bacillus mycoides Rock3-17] Length = 155 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 26 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 85 Query: 66 L 66 L Sbjct: 86 L 86 >gi|254490519|ref|ZP_05103705.1| hypothetical protein MDMS009_851 [Methylophaga thiooxidans DMS010] gi|224464263|gb|EEF80526.1| hypothetical protein MDMS009_851 [Methylophaga thiooxydans DMS010] Length = 121 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + + I+E L L LV AGIV + + Sbjct: 13 LSQETR--LHAFRLLVKAGNEGLAAGYISEQLNTPHNTLSFHLTHLVNAGIVHSQK 66 >gi|182624222|ref|ZP_02952008.1| transcriptional regulator, GntR family [Clostridium perfringens D str. JGS1721] gi|177910636|gb|EDT73004.1| transcriptional regulator, GntR family [Clostridium perfringens D str. JGS1721] Length = 249 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A++ +S + L + L L G+V+ +RG+ Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75 >gi|169334920|ref|ZP_02862113.1| hypothetical protein ANASTE_01326 [Anaerofustis stercorihominis DSM 17244] gi|169257658|gb|EDS71624.1| hypothetical protein ANASTE_01326 [Anaerofustis stercorihominis DSM 17244] Length = 299 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 N +A +S + + + L KAGI + T RG GG+ L Sbjct: 15 NKEKVTAPFLAGKFEVSVRTINRDILDLCKAGIPIVTTRGAGGGIYL 61 >gi|168217072|ref|ZP_02642697.1| transcriptional regulator, GntR family [Clostridium perfringens NCTC 8239] gi|182380791|gb|EDT78270.1| transcriptional regulator, GntR family [Clostridium perfringens NCTC 8239] Length = 249 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A++ +S + L + L L G+V+ +RG+ Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75 >gi|168209600|ref|ZP_02635225.1| transcriptional regulator, GntR family [Clostridium perfringens B str. ATCC 3626] gi|170712211|gb|EDT24393.1| transcriptional regulator, GntR family [Clostridium perfringens B str. ATCC 3626] Length = 249 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A++ +S + L + L L G+V+ +RG+ Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75 >gi|110803289|ref|YP_698602.1| transcriptional regulator [Clostridium perfringens SM101] gi|110683790|gb|ABG87160.1| transcriptional regulator, GntR family [Clostridium perfringens SM101] Length = 249 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A++ +S + L + L L G+V+ +RG+ Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75 >gi|126435087|ref|YP_001070778.1| regulatory proteins, IclR [Mycobacterium sp. JLS] gi|126234887|gb|ABN98287.1| transcriptional regulator, IclR family [Mycobacterium sp. JLS] Length = 262 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + D + VL A +IA A + + + +++ L G VE V GR G Sbjct: 13 QSVDRALVVLEILAKAGQAGVT--EIAAALDVHKSTVSRLIAVLESRGYVEQVSGR-GKY 69 Query: 65 RLC 67 RL Sbjct: 70 RLG 72 >gi|54024998|ref|YP_119240.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016506|dbj|BAD57876.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 325 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++A +S L + ++ L + G V T G G RL Sbjct: 24 EELAARLAVSPRTLRRDVERLREYGYPVRTQPGPGGYYRLA 64 >gi|1303895|dbj|BAA12551.1| YqhN [Bacillus subtilis] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|18310265|ref|NP_562199.1| transcriptional regulator [Clostridium perfringens str. 13] gi|168207542|ref|ZP_02633547.1| transcriptional regulator, GntR family [Clostridium perfringens E str. JGS1987] gi|169344548|ref|ZP_02865516.1| transcriptional regulator, GntR family [Clostridium perfringens C str. JGS1495] gi|18144945|dbj|BAB80989.1| probable transcriptional regulator [Clostridium perfringens str. 13] gi|169297309|gb|EDS79419.1| transcriptional regulator, GntR family [Clostridium perfringens C str. JGS1495] gi|170661101|gb|EDT13784.1| transcriptional regulator, GntR family [Clostridium perfringens E str. JGS1987] Length = 249 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A++ +S + L + L L G+V+ +RG+ Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75 >gi|325970576|ref|YP_004246767.1| hypothetical protein SpiBuddy_0746 [Spirochaeta sp. Buddy] gi|324025814|gb|ADY12573.1| hypothetical protein SpiBuddy_0746 [Spirochaeta sp. Buddy] Length = 298 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ +L Y + +AE +S +++ ++ L +AGI V ++ G Sbjct: 1 MQTSRMFQ----ILYYLIANQ--TVTAGHLAEKLEVSTRTIYRDIERLSEAGIPVYSIAG 54 Query: 60 RRGGVRL 66 R+GG+ L Sbjct: 55 RQGGLAL 61 >gi|317500640|ref|ZP_07958859.1| biotin-[acetyl-CoA-carboxylase] ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089880|ref|ZP_08338773.1| hypothetical protein HMPREF1025_02356 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897958|gb|EFV20010.1| biotin-[acetyl-CoA-carboxylase] ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403577|gb|EGG83135.1| hypothetical protein HMPREF1025_02356 [Lachnospiraceae bacterium 3_1_46FAA] Length = 332 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 D +I E +S ++K+++ L + G VE VR + G R+ D Sbjct: 10 READGYISGQEICEKFNVSRTAVWKVIRRLQEDGYEVEAVRNK--GYRMVESPD 61 >gi|289668140|ref|ZP_06489215.1| transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 286 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 42 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95 Query: 63 -GVRL 66 G L Sbjct: 96 RGYVL 100 >gi|254564241|ref|YP_003071336.1| regulatory protein, Crp [Methylobacterium extorquens DM4] gi|254271519|emb|CAX27534.1| putative regulatory protein, Crp (cAMP receptor protein) [Methylobacterium extorquens DM4] Length = 290 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 19/32 (59%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P + +A+ IS + + ++LQ L + G++E Sbjct: 217 PITQADLADTLGISCVHINRVLQKLRRDGLIE 248 >gi|229545945|ref|ZP_04434670.1| CBS domain transcriptional regulator [Enterococcus faecalis TX1322] gi|229550137|ref|ZP_04438862.1| CBS domain transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972914|ref|ZP_05423500.1| CBS domain-containing protein [Enterococcus faecalis T1] gi|256618952|ref|ZP_05475798.1| DRTGG domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256762379|ref|ZP_05502959.1| CBS domain-containing protein [Enterococcus faecalis T3] gi|256853009|ref|ZP_05558379.1| CBS domain-containing protein [Enterococcus faecalis T8] gi|256962043|ref|ZP_05566214.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis Merz96] gi|256965241|ref|ZP_05569412.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis HIP11704] gi|257078895|ref|ZP_05573256.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis JH1] gi|257082659|ref|ZP_05577020.1| thioesterase [Enterococcus faecalis E1Sol] gi|257085368|ref|ZP_05579729.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis Fly1] gi|257086863|ref|ZP_05581224.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis D6] gi|257089766|ref|ZP_05584127.1| CBS domain-containing protein [Enterococcus faecalis CH188] gi|257415982|ref|ZP_05592976.1| DRTGG domain-containing protein [Enterococcus faecalis AR01/DG] gi|257422738|ref|ZP_05599728.1| CBS domain-containing protein [Enterococcus faecalis X98] gi|293383065|ref|ZP_06628983.1| thioesterase family protein [Enterococcus faecalis R712] gi|293387782|ref|ZP_06632326.1| thioesterase family protein [Enterococcus faecalis S613] gi|294779565|ref|ZP_06744959.1| DRTGG domain protein [Enterococcus faecalis PC1.1] gi|300860271|ref|ZP_07106358.1| DRTGG domain protein [Enterococcus faecalis TUSoD Ef11] gi|307271138|ref|ZP_07552421.1| DRTGG domain protein [Enterococcus faecalis TX4248] gi|307277490|ref|ZP_07558582.1| DRTGG domain protein [Enterococcus faecalis TX2134] gi|307279179|ref|ZP_07560237.1| DRTGG domain protein [Enterococcus faecalis TX0860] gi|307288132|ref|ZP_07568142.1| DRTGG domain protein [Enterococcus faecalis TX0109] gi|307291357|ref|ZP_07571241.1| DRTGG domain protein [Enterococcus faecalis TX0411] gi|312900637|ref|ZP_07759934.1| DRTGG domain protein [Enterococcus faecalis TX0470] gi|312904116|ref|ZP_07763284.1| DRTGG domain protein [Enterococcus faecalis TX0635] gi|312907346|ref|ZP_07766337.1| DRTGG domain protein [Enterococcus faecalis DAPTO 512] gi|312909962|ref|ZP_07768810.1| DRTGG domain protein [Enterococcus faecalis DAPTO 516] gi|312952376|ref|ZP_07771251.1| DRTGG domain protein [Enterococcus faecalis TX0102] gi|229304723|gb|EEN70719.1| CBS domain transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229308908|gb|EEN74895.1| CBS domain transcriptional regulator [Enterococcus faecalis TX1322] gi|255963932|gb|EET96408.1| CBS domain-containing protein [Enterococcus faecalis T1] gi|256598479|gb|EEU17655.1| DRTGG domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256683630|gb|EEU23325.1| CBS domain-containing protein [Enterococcus faecalis T3] gi|256711468|gb|EEU26506.1| CBS domain-containing protein [Enterococcus faecalis T8] gi|256952539|gb|EEU69171.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis Merz96] gi|256955737|gb|EEU72369.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis HIP11704] gi|256986925|gb|EEU74227.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis JH1] gi|256990689|gb|EEU77991.1| thioesterase [Enterococcus faecalis E1Sol] gi|256993398|gb|EEU80700.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis Fly1] gi|256994893|gb|EEU82195.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis D6] gi|256998578|gb|EEU85098.1| CBS domain-containing protein [Enterococcus faecalis CH188] gi|257157810|gb|EEU87770.1| DRTGG domain-containing protein [Enterococcus faecalis ARO1/DG] gi|257164562|gb|EEU94522.1| CBS domain-containing protein [Enterococcus faecalis X98] gi|291079730|gb|EFE17094.1| thioesterase family protein [Enterococcus faecalis R712] gi|291082852|gb|EFE19815.1| thioesterase family protein [Enterococcus faecalis S613] gi|294453355|gb|EFG21763.1| DRTGG domain protein [Enterococcus faecalis PC1.1] gi|295112893|emb|CBL31530.1| Predicted transcriptional regulator containing CBS domains [Enterococcus sp. 7L76] gi|300849310|gb|EFK77060.1| DRTGG domain protein [Enterococcus faecalis TUSoD Ef11] gi|306497588|gb|EFM67121.1| DRTGG domain protein [Enterococcus faecalis TX0411] gi|306500868|gb|EFM70186.1| DRTGG domain protein [Enterococcus faecalis TX0109] gi|306504304|gb|EFM73516.1| DRTGG domain protein [Enterococcus faecalis TX0860] gi|306505755|gb|EFM74933.1| DRTGG domain protein [Enterococcus faecalis TX2134] gi|306512636|gb|EFM81285.1| DRTGG domain protein [Enterococcus faecalis TX4248] gi|310626374|gb|EFQ09657.1| DRTGG domain protein [Enterococcus faecalis DAPTO 512] gi|310629760|gb|EFQ13043.1| DRTGG domain protein [Enterococcus faecalis TX0102] gi|310632592|gb|EFQ15875.1| DRTGG domain protein [Enterococcus faecalis TX0635] gi|311289920|gb|EFQ68476.1| DRTGG domain protein [Enterococcus faecalis DAPTO 516] gi|311292118|gb|EFQ70674.1| DRTGG domain protein [Enterococcus faecalis TX0470] gi|315027386|gb|EFT39318.1| DRTGG domain protein [Enterococcus faecalis TX2137] gi|315030008|gb|EFT41940.1| DRTGG domain protein [Enterococcus faecalis TX4000] gi|315033774|gb|EFT45706.1| DRTGG domain protein [Enterococcus faecalis TX0017] gi|315036860|gb|EFT48792.1| DRTGG domain protein [Enterococcus faecalis TX0027] gi|315145684|gb|EFT89700.1| DRTGG domain protein [Enterococcus faecalis TX2141] gi|315147869|gb|EFT91885.1| DRTGG domain protein [Enterococcus faecalis TX4244] gi|315150654|gb|EFT94670.1| DRTGG domain protein [Enterococcus faecalis TX0012] gi|315153339|gb|EFT97355.1| DRTGG domain protein [Enterococcus faecalis TX0031] gi|315155884|gb|EFT99900.1| DRTGG domain protein [Enterococcus faecalis TX0043] gi|315157949|gb|EFU01966.1| DRTGG domain protein [Enterococcus faecalis TX0312] gi|315160229|gb|EFU04246.1| DRTGG domain protein [Enterococcus faecalis TX0645] gi|315164252|gb|EFU08269.1| DRTGG domain protein [Enterococcus faecalis TX1302] gi|315166654|gb|EFU10671.1| DRTGG domain protein [Enterococcus faecalis TX1341] gi|315170062|gb|EFU14079.1| DRTGG domain protein [Enterococcus faecalis TX1342] gi|315174452|gb|EFU18469.1| DRTGG domain protein [Enterococcus faecalis TX1346] gi|315578461|gb|EFU90652.1| DRTGG domain protein [Enterococcus faecalis TX0630] gi|323480607|gb|ADX80046.1| bacterial regulatory protein, GntR family protein [Enterococcus faecalis 62] gi|327535013|gb|AEA93847.1| thioesterase [Enterococcus faecalis OG1RF] gi|329571438|gb|EGG53125.1| DRTGG domain protein [Enterococcus faecalis TX1467] Length = 439 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA++ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESF 86 VV+ E Sbjct: 77 VVRIIEGDV 85 >gi|218899368|ref|YP_002447779.1| iron-dependent repressor family protein [Bacillus cereus G9842] gi|226704805|sp|B7IXJ5|MNTR_BACC2 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|218546048|gb|ACK98442.1| iron-dependent repressor family protein [Bacillus cereus G9842] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|166714115|ref|ZP_02245322.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 286 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 42 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95 Query: 63 -GVRL 66 G L Sbjct: 96 RGYVL 100 >gi|88856844|ref|ZP_01131497.1| putative GntR-family transcriptional regulator [marine actinobacterium PHSC20C1] gi|88813914|gb|EAR23783.1| putative GntR-family transcriptional regulator [marine actinobacterium PHSC20C1] Length = 272 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + + SQ+A+ ++ + + L L + G++ET RGR GG Sbjct: 43 VPGERLPSESQLAKRFGVALVTAREGLSILRENGLIETRRGREGG 87 >gi|255975969|ref|ZP_05426555.1| CBS domain-containing protein [Enterococcus faecalis T2] gi|255968841|gb|EET99463.1| CBS domain-containing protein [Enterococcus faecalis T2] Length = 277 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA++ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESF 86 VV+ E Sbjct: 77 VVRIIEGDV 85 >gi|182435036|ref|YP_001822755.1| ArsR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775552|ref|ZP_08234817.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1] gi|46403150|gb|AAS92597.1| putative transcription regulator [Streptomyces griseus] gi|178463552|dbj|BAG18072.1| putative ArsR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655885|gb|EGE40731.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1] Length = 131 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRP 69 +R L P R+ +A IS + K L+ L +AG+V RGR L R Sbjct: 22 LRAL------ASGPARVVDLAARHPISRPAVSKHLRVLTEAGLVTVEDRGRERHYALARA 75 >gi|29375939|ref|NP_815093.1| CBS domain-containing protein [Enterococcus faecalis V583] gi|227518638|ref|ZP_03948687.1| CBS domain transcriptional regulator [Enterococcus faecalis TX0104] gi|227553168|ref|ZP_03983217.1| CBS domain transcriptional regulator [Enterococcus faecalis HH22] gi|29343401|gb|AAO81163.1| CBS domain protein [Enterococcus faecalis V583] gi|227073895|gb|EEI11858.1| CBS domain transcriptional regulator [Enterococcus faecalis TX0104] gi|227177694|gb|EEI58666.1| CBS domain transcriptional regulator [Enterococcus faecalis HH22] gi|315575572|gb|EFU87763.1| DRTGG domain protein [Enterococcus faecalis TX0309B] gi|315579986|gb|EFU92177.1| DRTGG domain protein [Enterococcus faecalis TX0309A] Length = 439 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA++ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESF 86 VV+ E Sbjct: 77 VVRIIEGDV 85 >gi|221310375|ref|ZP_03592222.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221314699|ref|ZP_03596504.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319622|ref|ZP_03600916.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221323898|ref|ZP_03605192.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767549|ref|NP_390332.2| manganese transport transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|321311936|ref|YP_004204223.1| manganese transport transcriptional regulator [Bacillus subtilis BSn5] gi|251757298|sp|P54512|MNTR_BACSU RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|34811004|pdb|1ON1|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ab Conformation. gi|34811005|pdb|1ON1|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ab Conformation. gi|93279290|pdb|2EV0|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Cadmium gi|93279291|pdb|2EV0|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Cadmium gi|93279292|pdb|2EV5|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Calcium gi|93279293|pdb|2EV5|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Calcium gi|93279294|pdb|2EV6|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Zinc gi|93279295|pdb|2EV6|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Zinc gi|93279433|pdb|2F5C|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Hexagonal Crystal Form gi|93279434|pdb|2F5D|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ac Conformation, Ph 6.5 gi|93279435|pdb|2F5D|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ac Conformation, Ph 6.5 gi|93279436|pdb|2F5E|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ab Conformation, Ph 6.5 gi|93279437|pdb|2F5E|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ab Conformation, Ph 6.5 gi|93279438|pdb|2F5F|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ac Conformation, Ph 8.5 gi|93279439|pdb|2F5F|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound To Manganese, Ac Conformation, Ph 8.5 gi|119389997|pdb|2HYG|D Chain D, The Structure Of Apo-Mntr From Bacillus Subtilis, Native Form gi|225185177|emb|CAB14383.2| transcriptional regulator (DtxR family) [Bacillus subtilis subsp. subtilis str. 168] gi|291484896|dbj|BAI85971.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320018210|gb|ADV93196.1| manganese transport transcriptional regulator [Bacillus subtilis BSn5] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|307596100|ref|YP_003902417.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM 14429] gi|307551301|gb|ADN51366.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM 14429] Length = 176 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 +++ TD IRVL + +S+IAE +S + +++ L+ L+ GI Sbjct: 7 VSRFTDIEIRVLNVL--RENARASVSEIAERLGVSRVTVYRALRSLINKGI 55 >gi|302336969|ref|YP_003802175.1| GntR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634154|gb|ADK79581.1| GntR domain protein [Spirochaeta smaragdinae DSM 11293] Length = 245 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D SQI+E +S+ + + + L G++ +V+G+ Sbjct: 32 SQPGDKLLSESQISENLNLSKTSVRECVSMLNNIGLIHSVQGKG 75 >gi|295099401|emb|CBK88490.1| Transcriptional regulators of sugar metabolism [Eubacterium cylindroides T2-87] Length = 253 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 L+Y + ++ R+ +++ +SE + K L L K G + + GG L + Sbjct: 8 ALIYEELQSNGRVRVKDLSKKFNVSEDLIRKDLNVLEKEGKLRKI---YGGAVLAKE 61 >gi|302531875|ref|ZP_07284217.1| predicted protein [Streptomyces sp. AA4] gi|302440770|gb|EFL12586.1| predicted protein [Streptomyces sp. AA4] Length = 236 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + + +A ++ + + L+ L G++E G RGG + RP+ Sbjct: 31 GERLPSEADLAARHGVARNTVREALKSLAGQGLLEIKVGARGGTFIARPSAD 82 >gi|227830715|ref|YP_002832495.1| TrmB family transcriptional regulator [Sulfolobus islandicus L.S.2.15] gi|227457163|gb|ACP35850.1| transcriptional regulator TrmB [Sulfolobus islandicus L.S.2.15] Length = 646 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A+ ++ + ++A+A IS+ + +L+ L + G+VE V+ Sbjct: 478 ALPDEGGLKSQEVADALKISKQYAINVLKNLERKGVVEGVK 518 >gi|167951141|ref|ZP_02538215.1| Putative Transcriptional Regulator, ArsR family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 121 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 10 GIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ + + D + +I + S+ + + L L GI+ + +GR+ G Sbjct: 36 SLKAMSHPLRLKILCTLGDQEVSVQEIVDQVGTSQSNISQHLAILRDKGILASAQGRQPG 95 Query: 64 VR 65 + Sbjct: 96 LL 97 >gi|146341971|ref|YP_001207019.1| ArsR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194777|emb|CAL78802.1| Putative transcriptional regulator, arsR family; arsR2 [Bradyrhizobium sp. ORS278] Length = 111 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L+ H ++A + + L L L +AG+V + R Sbjct: 12 AFRTLV---QHEPEGLPAGELARLLEVPQNTLSSHLAVLSRAGLVSSER 57 >gi|56962183|ref|YP_173906.1| AraC/XylS family transcriptional regulator [Bacillus clausii KSM-K16] gi|56908418|dbj|BAD62945.1| AraC/XylS family transcriptional regulator [Bacillus clausii KSM-K16] Length = 298 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL---VKAGIVETVRGRRGGVRLCR 68 R L Y + D ++ IA + + +L ++ + + + R + L + Sbjct: 181 RALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKAFTGKSIHEFLISYRINKAKAMLKQ 240 Query: 69 PADQITILDV 78 I+I D+ Sbjct: 241 --TDISITDI 248 >gi|325929403|ref|ZP_08190531.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas perforans 91-118] gi|325540178|gb|EGD11792.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas perforans 91-118] Length = 286 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 42 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95 Query: 63 -GVRL 66 G L Sbjct: 96 RGYVL 100 >gi|289664380|ref|ZP_06485961.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 286 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 42 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95 Query: 63 -GVRL 66 G L Sbjct: 96 RGYVL 100 >gi|257123664|gb|ACV41692.1| MarR family regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 149 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 21/46 (45%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 VL++ H D + I + IS+ +++ + K G +E + Sbjct: 37 HVLVFLHCHQDRDIFVKDIEKELQISKSVTSNLVKRMEKNGFIEVI 82 >gi|225027700|ref|ZP_03716892.1| hypothetical protein EUBHAL_01959 [Eubacterium hallii DSM 3353] gi|224955014|gb|EEG36223.1| hypothetical protein EUBHAL_01959 [Eubacterium hallii DSM 3353] Length = 247 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 ND +IAE +S + +++ L G++E +G G L + Sbjct: 37 NDKILPEREIAEKLDVSRNSIREVMHMLEINGLLECRQGS--GNYLRCEPQDYMV 89 >gi|153815884|ref|ZP_01968552.1| hypothetical protein RUMTOR_02129 [Ruminococcus torques ATCC 27756] gi|145846703|gb|EDK23621.1| hypothetical protein RUMTOR_02129 [Ruminococcus torques ATCC 27756] Length = 332 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 D +I E +S ++K+++ L + G VE VR + G R+ D Sbjct: 10 READGYISGQEICEKFNVSRTAVWKVIRRLQEDGYEVEAVRNK--GYRMVESPD 61 >gi|254239816|ref|ZP_04933138.1| hypothetical protein PA2G_00443 [Pseudomonas aeruginosa 2192] gi|126193194|gb|EAZ57257.1| hypothetical protein PA2G_00443 [Pseudomonas aeruginosa 2192] Length = 323 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ + + S++A + L + + L + GI + RGR GG RL Sbjct: 8 VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63 >gi|116049412|ref|YP_791785.1| hypothetical protein PA14_45460 [Pseudomonas aeruginosa UCBPP-PA14] gi|115584633|gb|ABJ10648.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 323 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ + + S++A + L + + L + GI + RGR GG RL Sbjct: 8 VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63 >gi|325685995|gb|EGD28056.1| transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 100 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I +L Y H + P I +S+ + K L L K V+ Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKHDFVQ 65 >gi|313106466|ref|ZP_07792697.1| hypothetical protein PA39016_000430034 [Pseudomonas aeruginosa 39016] gi|310879199|gb|EFQ37793.1| hypothetical protein PA39016_000430034 [Pseudomonas aeruginosa 39016] Length = 323 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ + + S++A + L + + L + GI + RGR GG RL Sbjct: 8 VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63 >gi|296390166|ref|ZP_06879641.1| hypothetical protein PaerPAb_18531 [Pseudomonas aeruginosa PAb1] Length = 323 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ + + S++A + L + + L + GI + RGR GG RL Sbjct: 8 VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63 >gi|296333391|ref|ZP_06875844.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675103|ref|YP_003866775.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296149589|gb|EFG90485.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413347|gb|ADM38466.1| manganese transport transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 142 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|271967605|ref|YP_003341801.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510780|gb|ACZ89058.1| GntR domain-containing protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 20 HNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-ADQITILD 77 I + +S + + L+ L ++ TVRG GG + P D I+ Sbjct: 21 QPGDRLPIEPDLCVRYGVSRSTVREALRLLASQNLIRTVRGVTGGSFVAHPDPDHISAY- 79 Query: 78 VVKATEESFFVAE 90 E SF + Sbjct: 80 ----LETSFDLMR 88 >gi|297561637|ref|YP_003680611.1| hypothetical protein Ndas_2690 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846085|gb|ADH68105.1| Helix-turn-helix type 11 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 324 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 S++A +S + + L G V G GG RL Sbjct: 26 TGSELAGRLGVSTRTVRADIGRLRSLGYPVAARPGVAGGYRLA 68 >gi|182419287|ref|ZP_02950540.1| GntR-family transcriptional regulator [Clostridium butyricum 5521] gi|237668804|ref|ZP_04528788.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376927|gb|EDT74498.1| GntR-family transcriptional regulator [Clostridium butyricum 5521] gi|237657152|gb|EEP54708.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT E BL5262] Length = 122 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + IA ++ + K L L K G+V + R Sbjct: 31 GDKLPSVRDIASEASVNPNTMQKALTELEKTGLVFSKR 68 >gi|15596664|ref|NP_250158.1| hypothetical protein PA1467 [Pseudomonas aeruginosa PAO1] gi|107100901|ref|ZP_01364819.1| hypothetical protein PaerPA_01001931 [Pseudomonas aeruginosa PACS2] gi|218892660|ref|YP_002441529.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234565|ref|ZP_04927888.1| hypothetical protein PACG_00426 [Pseudomonas aeruginosa C3719] gi|9947420|gb|AAG04856.1|AE004576_5 hypothetical protein PA1467 [Pseudomonas aeruginosa PAO1] gi|126166496|gb|EAZ52007.1| hypothetical protein PACG_00426 [Pseudomonas aeruginosa C3719] gi|218772888|emb|CAW28700.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 323 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ + + S++A + L + + L + GI + RGR GG RL Sbjct: 8 VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63 >gi|291438850|ref|ZP_06578240.1| helix-turn-helix domain-containing protein [Streptomyces ghanaensis ATCC 14672] gi|291341745|gb|EFE68701.1| helix-turn-helix domain-containing protein [Streptomyces ghanaensis ATCC 14672] Length = 326 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 N S++A +S +++ ++ L +G+ V RG GG RL Sbjct: 17 QNRGRMTASELAAELEVSVRTVYRDVEALGASGVPVRAERGPEGGYRL 64 >gi|316933161|ref|YP_004108143.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1] gi|315600875|gb|ADU43410.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1] Length = 118 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 3 LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + R+L+ C D +A+A + + L L +AG+V + R Sbjct: 13 LSQETRLAVFRLLVRC--EPDG-VAAGDLAKAVGVPANTMSVHLGVLSRAGLVTSER 66 >gi|254774761|ref|ZP_05216277.1| transcriptional regulator, ArsR family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 134 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68 +R+ + + + + ++ +A + + + + L+ L AG+V R GR RL Sbjct: 57 VRIAIVLQLRQSHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 115 Query: 69 PADQITILDVVKATEES 85 I + V A EE Sbjct: 116 HLAHIVVDAVAHAGEEP 132 >gi|150402972|ref|YP_001330266.1| signal transduction protein [Methanococcus maripaludis C7] gi|150034002|gb|ABR66115.1| putative signal transduction protein with CBS domains [Methanococcus maripaludis C7] Length = 303 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LISIYREKNKAVKGTEIAVRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64 >gi|126649456|ref|ZP_01721697.1| YobV [Bacillus sp. B14905] gi|126593781|gb|EAZ87704.1| YobV [Bacillus sp. B14905] Length = 309 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + + ++ I+ ++AE +S +++ ++ L AG+ V + +G Sbjct: 1 MKLER-----LLTMIMILINR-KKVTAQELAEVFNVSVRTIYRDIETLSCAGVPVISQQG 54 Query: 60 RRGGVRL 66 GG+ L Sbjct: 55 VHGGISL 61 >gi|186472598|ref|YP_001859940.1| helix-turn-helix type 11 domain-containing protein [Burkholderia phymatum STM815] gi|184194930|gb|ACC72894.1| Helix-turn-helix type 11 domain protein [Burkholderia phymatum STM815] Length = 323 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + +A+ +S +++ + L AG+ V RG GG L Sbjct: 9 MLLMLQVKGRVTAQALADEFDVSIRTVYRDIDQLSAAGVPVYADRGPGGGFAL 61 >gi|108804604|ref|YP_644541.1| ArsR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765847|gb|ABG04729.1| transcriptional regulator, ArsR family [Rubrobacter xylanophilus DSM 9941] Length = 125 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 10/94 (10%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPAD 71 +L Y A + +I EA ++ + LQ L G V R GRR + Sbjct: 41 ILAYLARRGEAGVS--EIVEAIGATQPRVSVHLQCLAWCGYVRARREGRRAYYSIADE-- 96 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 +L +++ EE H C + G C Sbjct: 97 --RVLQMLRLAEELLADNR---EHVEACEVTGEC 125 >gi|294627580|ref|ZP_06706163.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598211|gb|EFF42365.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 302 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 58 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 111 Query: 63 -GVRL 66 G L Sbjct: 112 RGYVL 116 >gi|288932461|ref|YP_003436521.1| TrmB family transcriptional regulator [Ferroglobus placidus DSM 10642] gi|288894709|gb|ADC66246.1| transcriptional regulator, TrmB [Ferroglobus placidus DSM 10642] Length = 208 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 K +DY I+VL+ + S+IAE I +++ ++ L K G+V RG+ Sbjct: 8 KLSDYEIKVLLTLISEGE--LTASEIAEKSGIPRTSVYETVKSLEKKGLVV-CRGK 60 >gi|229171428|ref|ZP_04299013.1| Transcriptional regulator, DeoR [Bacillus cereus MM3] gi|228612132|gb|EEK69369.1| Transcriptional regulator, DeoR [Bacillus cereus MM3] Length = 326 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +L++ + +IA+ IS + + + L G+ + +GR GG + Sbjct: 19 ILIFASAQK--TFTAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70 >gi|284028078|ref|YP_003378009.1| transcriptional regulator TrmB [Kribbella flavida DSM 17836] gi|283807371|gb|ADB29210.1| transcriptional regulator, TrmB [Kribbella flavida DSM 17836] Length = 109 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 11/93 (11%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRP- 69 RVL+ D P + +AE +S L L L G+V GRR L P Sbjct: 24 RVLLAL---QDGPGYPADLAERIGVSRQSLSNHLACLRGCGLVVAEPEGRRTRYELADPQ 80 Query: 70 -ADQIT-ILDVVKATEESFFVAECFASHKIDCP 100 +T +L+VV A + A C +C Sbjct: 81 LGTALTELLNVVLAVD----PACCRPDQSGECR 109 >gi|229819369|ref|YP_002880895.1| transcriptional regulator, TrmB [Beutenbergia cavernae DSM 12333] gi|229565282|gb|ACQ79133.1| transcriptional regulator, TrmB [Beutenbergia cavernae DSM 12333] Length = 242 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 GIR L A P I++IA A + ++IL+ L G+V VR G V L Sbjct: 30 GIRTLEVLADAA-RPLTIAEIATALGVHRSIAYRILRTLEDHGLV--VRDSGGAVALG 84 >gi|159905282|ref|YP_001548944.1| signal transduction protein [Methanococcus maripaludis C6] gi|159886775|gb|ABX01712.1| putative signal transduction protein with CBS domains [Methanococcus maripaludis C6] Length = 303 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LISIYREKNKAVKGTEIAVRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64 >gi|153006923|ref|YP_001381248.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5] gi|152030496|gb|ABS28264.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5] Length = 487 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 14/90 (15%) Query: 5 KRTDYGIRVLMYCA---------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 KR D ++ + A + ++A + + +IL+ LV+AG++ Sbjct: 318 KRADQALKETLAVAAGAQIARDFLAGGPRRSAPELAALLEVPPPVIEEILEALVRAGLL- 376 Query: 56 TVRGRRG---GVRLCRPADQITILDVVKAT 82 VR G R D I D+ A Sbjct: 377 -VRAAVAQHVGYVPGRDLDDIRASDLRDAL 405 >gi|134046651|ref|YP_001098136.1| signal transduction protein [Methanococcus maripaludis C5] gi|132664276|gb|ABO35922.1| putative signal transduction protein with CBS domains [Methanococcus maripaludis C5] Length = 303 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LISIYREKNKAVKGTEIAIRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64 >gi|239831872|ref|ZP_04680201.1| ArsR2 [Ochrobactrum intermedium LMG 3301] gi|239824139|gb|EEQ95707.1| ArsR2 [Ochrobactrum intermedium LMG 3301] Length = 119 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H R ++A I + + L L +AG+V + R Sbjct: 25 LVRHEPAGIRAGELARMLDIPQNTMSAHLATLSRAGLVRSER 66 >gi|257064694|ref|YP_003144366.1| Mn-dependent transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792347|gb|ACV23017.1| Mn-dependent transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 144 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 DY + ++ A + P R +A+ +S+ + K + L G Sbjct: 24 DY-LEAIVDLAGPENNPIRAVDLAKKLDVSKASVSKAISNLKDKGF 68 >gi|229492720|ref|ZP_04386521.1| helix-turn-helix type 11 domain protein [Rhodococcus erythropolis SK121] gi|229320379|gb|EEN86199.1| helix-turn-helix type 11 domain protein [Rhodococcus erythropolis SK121] Length = 236 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 M++ + + L+ D S+++E ++ + + ++ L+ +G +E Sbjct: 1 MNVNRAAR--LHALVEELRRQGDRGTTCSRLSEEFGVTTRTIKRDIETLMMSGAAIEARS 58 Query: 59 GRRGGVRL 66 G GG RL Sbjct: 59 GPGGGYRL 66 >gi|296128192|ref|YP_003635442.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena DSM 20109] gi|296020007|gb|ADG73243.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena DSM 20109] Length = 335 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++A +SE + L L AG+ + + +GR GG RL Sbjct: 15 LLLQRRGRVTAAEVARELEVSERTARRDLDALAVAGVPLYSSQGRGGGWRL 65 >gi|258652485|ref|YP_003201641.1| transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555710|gb|ACV78652.1| putative transcriptional regulator [Nakamurella multipartita DSM 44233] Length = 237 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV----RGRRGGVRLCRPADQITIL 76 D P + +A IS + + L L+ G V + RG+RG RPA + Sbjct: 34 ADGPITAADLAARLGISPAAVRRHLDQLLAEGAVRSREASARGQRGR---GRPARSYLLT 90 Query: 77 DVVK 80 DV + Sbjct: 91 DVGR 94 >gi|320107916|ref|YP_004183506.1| IclR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319926437|gb|ADV83512.1| transcriptional regulator, IclR family [Terriglobus saanensis SP1PR4] Length = 265 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 35/153 (22%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC--- 67 + VL A ++ + +IA + + +F+IL L +AG VE G RL Sbjct: 14 LAVLESLAT-SERGKALKEIAADVGLGKSTVFRILFTLKEAGYVEQYA-ANGSYRLTLKT 71 Query: 68 -----RPADQITILDVVK--------ATEESFFVAECFASH-------------KIDCPL 101 R ++++ + DV + +ES +AE A ++ + Sbjct: 72 GGLARRHSERLRLTDVARPHLIRLRDDLDESVALAERRAQAVVLIDVLETSHPLRLSFQI 131 Query: 102 VGSCGLTS-VLRKALNAFFDVLTQYSIECLVRN 133 C + + L KA+ AF L+ + L++N Sbjct: 132 GDDCPIHATALGKAVAAF---LSPEELASLLKN 161 >gi|294667220|ref|ZP_06732441.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603001|gb|EFF46431.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 302 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 58 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 111 Query: 63 -GVRL 66 G L Sbjct: 112 RGYVL 116 >gi|257900269|ref|ZP_05679922.1| replication protein E [Enterococcus faecium Com15] gi|257838181|gb|EEV63255.1| replication protein E [Enterococcus faecium Com15] Length = 242 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 122 MAYISEKSDVYKPYLVTTKKEIRETLGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 181 Query: 67 C 67 Sbjct: 182 A 182 >gi|257889189|ref|ZP_05668842.1| replication protein E [Enterococcus faecium 1,141,733] gi|257825261|gb|EEV52175.1| replication protein E [Enterococcus faecium 1,141,733] Length = 449 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 329 MAYISEKSDVYKPYLVTTKKEIRETLGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 388 Query: 67 C 67 Sbjct: 389 A 389 >gi|257867814|ref|ZP_05647467.1| transcriptional repressor CodY [Enterococcus casseliflavus EC30] gi|257874141|ref|ZP_05653794.1| transcriptional repressor CodY [Enterococcus casseliflavus EC10] gi|257876706|ref|ZP_05656359.1| transcriptional repressor CodY [Enterococcus casseliflavus EC20] gi|257801897|gb|EEV30800.1| transcriptional repressor CodY [Enterococcus casseliflavus EC30] gi|257808305|gb|EEV37127.1| transcriptional repressor CodY [Enterococcus casseliflavus EC10] gi|257810872|gb|EEV39692.1| transcriptional repressor CodY [Enterococcus casseliflavus EC20] Length = 263 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 ++ + ++ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVQAIFEALEGDEGRLTASSIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|302561449|ref|ZP_07313791.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302479067|gb|EFL42160.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 346 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +A+ +S + + + L + G V G GG +L A+ Sbjct: 25 DLADRLGVSARTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 68 >gi|228960470|ref|ZP_04122121.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047898|ref|ZP_04193474.1| Transcriptional regulator mntR [Bacillus cereus AH676] gi|228723355|gb|EEL74724.1| Transcriptional regulator mntR [Bacillus cereus AH676] gi|228799234|gb|EEM46200.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 137 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 8 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 67 Query: 66 L 66 L Sbjct: 68 L 68 >gi|227550332|ref|ZP_03980381.1| possible repE protein [Enterococcus faecium TX1330] gi|257897424|ref|ZP_05677077.1| replication protein E [Enterococcus faecium Com12] gi|227180534|gb|EEI61506.1| possible repE protein [Enterococcus faecium TX1330] gi|257833989|gb|EEV60410.1| replication protein E [Enterococcus faecium Com12] Length = 291 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 171 MAYISEKSDVYKPYLVTTKKEIRETLGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 230 Query: 67 C 67 Sbjct: 231 A 231 >gi|34811006|pdb|1ON2|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr), D8m Mutant, Bound To Manganese gi|34811007|pdb|1ON2|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr), D8m Mutant, Bound To Manganese Length = 142 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|86139920|ref|ZP_01058485.1| transcriptional regulator, GntR family protein [Roseobacter sp. MED193] gi|85823338|gb|EAQ43548.1| transcriptional regulator, GntR family protein [Roseobacter sp. MED193] Length = 243 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74 + S++A+ +S + + L+ L ++ T RG GG + R A Q+T Sbjct: 31 DQRLPSESELADQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLSFEDAYAQQVT 90 Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 ++ + E F C A + L +C SVLR+ Sbjct: 91 TSTLLLSMNEVSFQTACEARYA----LERACAPLSVLRR 125 >gi|331086408|ref|ZP_08335488.1| hypothetical protein HMPREF0987_01791 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406174|gb|EGG85697.1| hypothetical protein HMPREF0987_01791 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 261 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 R+L Y H P I +++E +S +L +I + Sbjct: 163 RILTYINQHIQNPLTIEELSENFYLSPSYLCRIFK 197 >gi|325479714|gb|EGC82804.1| transcriptional regulator, GntR family [Anaerococcus prevotii ACS-065-V-Col13] Length = 127 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 21/46 (45%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +I+++ I++ + K + L + GI+ET G Sbjct: 27 DLLKDGDKFPSVREISKSLSINQTTVSKAFKELDRLGIIETKPGIG 72 >gi|307544444|ref|YP_003896923.1| RpiR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216468|emb|CBV41738.1| transcriptional regulator, RpiR family [Halomonas elongata DSM 2581] Length = 301 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 L KR+ + + L+ A + IS +AE +S L ++ Q L G Sbjct: 30 RLGKRSRHVLTALVT-APQQAAVSSISDLAERLGVSPSTLSRLAQRLGFEGF 80 >gi|296136487|ref|YP_003643729.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12] gi|295796609|gb|ADG31399.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12] Length = 245 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLC 67 R M A+ + ++A +S L L +AG++E +GR RL Sbjct: 19 RASMLLALGDGRALPAGELAACAGVSAATASGHLGALREAGLLEAKQQGRHRYYRLA 75 >gi|302525847|ref|ZP_07278189.1| histidine utilization repressor [Streptomyces sp. AA4] gi|302434742|gb|EFL06558.1| histidine utilization repressor [Streptomyces sp. AA4] Length = 265 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 11 IRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R L+ + P ++A+ +S L + + LV+ G++ VRG+ Sbjct: 31 LRRLVERELPPGSPIPSERELAQHYGVSRLTVRSAIGKLVEEGLLARVRGKG 82 >gi|239942417|ref|ZP_04694354.1| GntR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239988882|ref|ZP_04709546.1| GntR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291445872|ref|ZP_06585262.1| GntR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348819|gb|EFE75723.1| GntR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 154 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R L D ++ EA I+ + K + L + G+VE RG Sbjct: 23 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 78 >gi|302527948|ref|ZP_07280290.1| predicted protein [Streptomyces sp. AA4] gi|302436843|gb|EFL08659.1| predicted protein [Streptomyces sp. AA4] Length = 324 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 P ++A +S +++ ++ L AGI V G GG RL Sbjct: 14 QARQPRTAEELAARLEVSPRTVYRDIEALSAAGIPVYGEPGHDGGYRL 61 >gi|229918322|ref|YP_002886968.1| GntR family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469751|gb|ACQ71523.1| transcriptional regulator, GntR family [Exiguobacterium sp. AT1b] Length = 129 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A I+ + K Q L + G++E RGR Sbjct: 31 RPGDKVMSVRELATDLVINPNTVSKAYQELERLGLLEMRRGRG 73 >gi|118589447|ref|ZP_01546853.1| predicted transcriptional regulator [Stappia aggregata IAM 12614] gi|118438147|gb|EAV44782.1| predicted transcriptional regulator [Stappia aggregata IAM 12614] Length = 342 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +AE +S +++ + L+ G+ V+ RG GG RL Sbjct: 20 VPATVLAERFHVSLRTIYRDIDRLIALGVPVDAERGAEGGYRLA 63 >gi|56459794|ref|YP_155075.1| Fic domain-containing protein [Idiomarina loihiensis L2TR] gi|56178804|gb|AAV81526.1| Uncharacterized protein containing Fic domain [Idiomarina loihiensis L2TR] Length = 351 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 4 TKRTDYG---IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + Y R ++ ++ +++AE IS + K + L + G++ Sbjct: 270 SGKGRYSGTSTRNMVLRLLNEQPEWSAARVAEVLNISSRAVEKHISKLKEQGVLIRKGSA 329 Query: 61 RGGVR 65 RGG Sbjct: 330 RGGYW 334 >gi|21221003|ref|NP_626782.1| IclR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|6714758|emb|CAB66222.1| putative IclR-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 265 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + +L A D P R+ ++A+ + ++ +LQ L+ G V T Sbjct: 22 VELLEVLAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 67 >gi|326317421|ref|YP_004235093.1| GntR domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374257|gb|ADX46526.1| GntR domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 272 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 16/82 (19%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG--------RRGG 63 R+L+ D S+I A +S + + + L AG+VET G R GG Sbjct: 48 RILV----PGDKLPTESEIMRAHDVSRTVVREAISRLQAAGLVETRHGIGTFVLQPRAGG 103 Query: 64 -VRLCRPADQITI-LDVVKATE 83 RL +++ DV+ E Sbjct: 104 VFRL--DPSELSTSADVLAVLE 123 >gi|302546525|ref|ZP_07298867.1| DeoR-family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464143|gb|EFL27236.1| DeoR-family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 323 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L + G V + G GG RL A+ Sbjct: 22 SGADLADRLGVTPRTVRRDVDRLRELGYPVHSAPGTAGGYRLSAGAE 68 >gi|239930489|ref|ZP_04687442.1| helix-turn-helix type 11 domain-containing protein [Streptomyces ghanaensis ATCC 14672] Length = 323 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 N S++A +S +++ ++ L +G+ V RG GG RL Sbjct: 14 QNRGRMTASELAAELEVSVRTVYRDVEALGASGVPVRAERGPEGGYRL 61 >gi|257791618|ref|YP_003182224.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|317487967|ref|ZP_07946550.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325833209|ref|ZP_08165715.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] gi|257475515|gb|ACV55835.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|316912916|gb|EFV34442.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325485591|gb|EGC88059.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] Length = 126 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A I+ + K+ + + +G++ + RGR Sbjct: 32 QPGDQLPTVHEMAVNLNINYNTVNKVYRSMETSGLIMSKRGRG 74 >gi|146338618|ref|YP_001203666.1| IclR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191424|emb|CAL75429.1| putative Transcriptional regulator, IclR family [Bradyrhizobium sp. ORS278] Length = 258 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +R+L A + R+ IAEA S+ ++LQ L G E G+R RL Sbjct: 1 MRLLRVLAEGDPKGLRLKDIAEAAGCSQPTAHRMLQDLAAEGFAEQAAGKR--YRLA 55 >gi|139439961|ref|ZP_01773298.1| Hypothetical protein COLAER_02336 [Collinsella aerofaciens ATCC 25986] gi|133774727|gb|EBA38547.1| Hypothetical protein COLAER_02336 [Collinsella aerofaciens ATCC 25986] Length = 243 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY ++E +S + LQ L + G+V RGR Sbjct: 27 RPGDYLPSERDLSERYGLSRTTVRLALQELERLGLVVRQRGRG 69 >gi|254245873|ref|ZP_04939194.1| regulatory protein, GntR [Burkholderia cenocepacia PC184] gi|124870649|gb|EAY62365.1| regulatory protein, GntR [Burkholderia cenocepacia PC184] Length = 279 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70 D +++ A +S + + + + +G+VET G G L Sbjct: 65 RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLVETRHGI-GSFVLEPSRRQTLGIDP 123 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 124 ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 169 >gi|160901166|ref|YP_001566748.1| GntR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366750|gb|ABX38363.1| transcriptional regulator, GntR family [Delftia acidovorans SPH-1] Length = 224 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 11/104 (10%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L+ A + ++E+ IS L + + L K G++ V GV + Sbjct: 22 LIDGAWEPGQKLSEASLSESLQISRNTLREAFRLLTKEGLL--VHEPNKGVSVA-APSIA 78 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 +I+D+ + + EC A + P+ + S++R+A+ A Sbjct: 79 SIIDIYRV----RRMVECQALAQAY-PMHPA---RSLMREAVEA 114 >gi|312863977|ref|ZP_07724213.1| transcriptional regulator, MarR family [Streptococcus vestibularis F0396] gi|311100390|gb|EFQ58597.1| transcriptional regulator, MarR family [Streptococcus vestibularis F0396] Length = 147 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLC 67 +LM A + S++A+ +S+ + K ++ LVK G++E + + G L Sbjct: 42 HILMLLA---EGRKTNSELAKTLNVSQAAVTKAVKTLVKEGMLEAKKDKGDGRVTYFVLT 98 Query: 68 RPADQI 73 + A I Sbjct: 99 QEAQPI 104 >gi|256393498|ref|YP_003115062.1| MarR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359724|gb|ACU73221.1| transcriptional regulator, MarR family [Catenulispora acidiphila DSM 44928] Length = 188 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R L+ + P I+++AEA + L + + + AG+V T G Sbjct: 66 VRELLRL--YRTGPMTITELAEAVDRTHSALSQKVAAMKAAGLVRTTPGP 113 >gi|229057088|ref|ZP_04196480.1| Transcriptional regulator, GntR [Bacillus cereus AH603] gi|228720229|gb|EEL71808.1| Transcriptional regulator, GntR [Bacillus cereus AH603] Length = 126 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|227495830|ref|ZP_03926141.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226834625|gb|EEH67008.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 210 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ A + +S++ + FL K + LV G V G G + RP Sbjct: 22 ALVSLASN---WVSVSELEGQIQV-FSFLRKTVSKLVNCGTVWAGIGVFAGWLMSRP--T 75 Query: 73 ITILDVVKATEESFFV 88 I+++ V A E + Sbjct: 76 ISVVAAVLAAEGTLAF 91 >gi|152976486|ref|YP_001376003.1| regulatory protein GntR HTH [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025238|gb|ABS23008.1| regulatory protein GntR HTH [Bacillus cytotoxicus NVH 391-98] Length = 139 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N+ + ++A ++ + K Q L + GI+ET+RG+ Sbjct: 33 NEKLPSVRELASLLIVNPNTVSKAYQDLERQGIIETLRGKG 73 >gi|160879790|ref|YP_001558758.1| helix-turn-helix type 11 domain-containing protein [Clostridium phytofermentans ISDg] gi|160428456|gb|ABX42019.1| Helix-turn-helix type 11 domain protein [Clostridium phytofermentans ISDg] Length = 299 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + Y ++ ++AE +S +++ + L AGI V T +G+ GG+ L Sbjct: 9 ITYLLLNKKS-MTAKELAEHFEVSVRTIYRDIDALSLAGIPVYTTKGKGGGISL 61 >gi|317404075|gb|EFV84529.1| regulatory protein [Achromobacter xylosoxidans C54] Length = 170 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 10 GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----- 62 +R L ++ P ++ + +A + + + +IL LV AG++ +R G Sbjct: 8 ALRALTLLEQVAGSEAPVSLAALTDATGLPKPSVLRILSRLVDAGML--LREPAGKRYIT 65 Query: 63 GVRLCRPADQ 72 G RL A Sbjct: 66 GPRLALLARD 75 >gi|307308375|ref|ZP_07588080.1| GntR domain protein [Sinorhizobium meliloti BL225C] gi|306901176|gb|EFN31783.1| GntR domain protein [Sinorhizobium meliloti BL225C] Length = 248 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT RT ++ + D +S++A+ +S + + + L G+VE G Sbjct: 4 LTSRTIQALKAHIIEGQLDKGDKLGSLSELAQKFGVSRTVIREAVSALRSDGVVEARHGV 63 Query: 61 R 61 Sbjct: 64 G 64 >gi|291460186|ref|ZP_06599576.1| putative transcriptional regulator [Oribacterium sp. oral taxon 078 str. F0262] gi|291417133|gb|EFE90852.1| putative transcriptional regulator [Oribacterium sp. oral taxon 078 str. F0262] Length = 306 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 10/61 (16%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79 + ++AE +S+ + + ++ L KAGI + T +G GG I+I+D Sbjct: 15 QEEKTTAPELAERFEVSKRTINRDIEDLCKAGIPIRTAQGTGGG---------ISIMDGY 65 Query: 80 K 80 + Sbjct: 66 R 66 >gi|289771719|ref|ZP_06531097.1| IclR family transcriptional regulator [Streptomyces lividans TK24] gi|289701918|gb|EFD69347.1| IclR family transcriptional regulator [Streptomyces lividans TK24] Length = 265 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + +L A D P R+ ++A+ + ++ +LQ L+ G V T Sbjct: 22 VELLEVLAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 67 >gi|271966594|ref|YP_003340790.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509769|gb|ACZ88047.1| putative transcriptional regulator, ArsR family [Streptosporangium roseum DSM 43021] Length = 315 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D P +++A +S + + L L AG+V R Sbjct: 257 DAPASTTELARRTGLSPAGVSQYLTALRDAGLVSAHR 293 >gi|212223724|ref|YP_002306960.1| hypothetical membrane protein, conserved [Thermococcus onnurineus NA1] gi|212008681|gb|ACJ16063.1| hypothetical membrane protein, conserved [Thermococcus onnurineus NA1] Length = 282 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R L+Y +++ EA + + +++ + L + G+V+ ++GR+ Sbjct: 226 RALLYI-FDKGGRASQAEVREAIGLPKTTAWRMFKRLERKGLVKVIKGRK 274 >gi|162451495|ref|YP_001613862.1| GntR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161162077|emb|CAN93382.1| GntR-family transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 479 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 11 IRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +R L+ A I Q+A +S + LV AG++E+ RG G Sbjct: 20 LRALIEGARLPPGARLTSIRQLAGQLGVSPNTVVTAYDRLVAAGLLES-RGTAG 72 >gi|323464903|gb|ADX77056.1| protein RepR, truncated [Staphylococcus pseudintermedius ED99] Length = 270 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 150 MAYISEKSDVYKPYLATTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 209 Query: 67 C 67 Sbjct: 210 A 210 >gi|304398292|ref|ZP_07380166.1| transcriptional regulator, IclR family [Pantoea sp. aB] gi|304354158|gb|EFM18531.1| transcriptional regulator, IclR family [Pantoea sp. aB] Length = 259 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++L + +IA+A + + +I+ L A +V + GG+RL Sbjct: 22 AAKILNALGEQPGG-MSLGEIAQAVELPRSTVQRIVAALDSAELVRSS--GAGGLRLG 76 >gi|302188054|ref|ZP_07264727.1| regulatory protein GntR HTH [Pseudomonas syringae pv. syringae 642] Length = 250 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 11 IRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRGG----- 63 +R + D + +A ++ L + L L G+V+T GR GG Sbjct: 19 LRTAIDLGFFEDGEMLPKEAVLARELHVTAFTLREALAELRSEGLVDTKPGRGGGTFVQH 78 Query: 64 -VRLCRPADQITILDV 78 R+ +I + ++ Sbjct: 79 TSRVAHDKAEIRLREL 94 >gi|257869689|ref|ZP_05649342.1| transcriptional repressor CodY [Enterococcus gallinarum EG2] gi|257803853|gb|EEV32675.1| transcriptional repressor CodY [Enterococcus gallinarum EG2] Length = 263 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 ++ + ++ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVQAIFEALEGDEGRLTASSIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|253574024|ref|ZP_04851366.1| trehalose operon repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251846501|gb|EES74507.1| trehalose operon repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 240 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 14/60 (23%) Query: 16 YCAIHND--YPNRISQIA------------EACCISELFLFKILQPLVKAGIVETVRGRR 61 Y AIHND +IA E S + K L L + G ++ V+G+ Sbjct: 5 YLAIHNDIARQIEAGEIAPHSLLPSEHELKERYNTSRETIRKALTLLAQNGYIQKVQGKG 64 >gi|161504367|ref|YP_001571479.1| hypothetical protein SARI_02478 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865714|gb|ABX22337.1| hypothetical protein SARI_02478 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 566 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62 +S++AE C SE L +L+ +AG ++ + RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLKWEAQSGRGKRG 65 >gi|78188061|ref|YP_378399.1| biotin--acetyl-CoA-carboxylase ligase [Chlorobium chlorochromatii CaD3] gi|78170260|gb|ABB27356.1| Biotin--acetyl-CoA-carboxylase ligase [Chlorobium chlorochromatii CaD3] Length = 327 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 VL + ++ + S++++ +S ++K + L G +E V GR G RL Sbjct: 8 VLHHLSVAAPHFVSGSELSQLLNVSATAIWKHITQLRHEGYAIEAVTGR--GYRL 60 >gi|48478526|ref|YP_024232.1| transcriptional regulator [Picrophilus torridus DSM 9790] gi|48431174|gb|AAT44039.1| transcriptional regulator [Picrophilus torridus DSM 9790] Length = 343 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 3 LTKR--TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LTK ++Y IRV Y + + P + + + I + ++ I L K G+V G Sbjct: 13 LTKFNLSNYAIRV--YKCLLLNGPMPATDVVKETGIPQPRVYDIFSLLEKKGLVSVSSGL 70 Query: 61 RGGVRLCRPADQ 72 R + + P + Sbjct: 71 R-KIYMAVPPKE 81 >gi|10956204|ref|NP_044463.1| RepR [Streptococcus agalactiae] gi|10956210|ref|NP_053002.1| hypothetical protein [Streptococcus agalactiae] gi|132370|sp|P18629|REPR_STRAG RecName: Full=Protein repR gi|46641|emb|CAA35647.1| unnamed protein product [Streptococcus agalactiae] gi|511075|emb|CAA50899.1| repR [Streptococcus agalactiae] gi|1857520|gb|AAB48451.1| RepR [Streptococcus agalactiae] gi|30267508|gb|AAP21695.1| RepR [Expression vector pDAS112] gi|37496518|emb|CAD50593.1| RepR protein [Cloning vector pUvBBAC] Length = 496 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I E I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLATTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|325922964|ref|ZP_08184674.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas gardneri ATCC 19865] gi|325546545|gb|EGD17689.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas gardneri ATCC 19865] Length = 286 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 42 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95 Query: 63 -GVRL 66 G L Sbjct: 96 RGYVL 100 >gi|325570908|ref|ZP_08146557.1| transcriptional regulator CodY [Enterococcus casseliflavus ATCC 12755] gi|325156312|gb|EGC68495.1| transcriptional regulator CodY [Enterococcus casseliflavus ATCC 12755] Length = 263 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 ++ + ++ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVQAIFEALEGDEGRLTASSIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|315185693|gb|EFU19460.1| transcriptional regulator, AraC family [Spirochaeta thermophila DSM 6578] Length = 318 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M + R+L Y H +S++AE + +L + K G+ Sbjct: 178 MRY--FSRVA-RILKYLDTHYMDRISLSELAEREGVHPSYLSRFFHE--KVGL 225 >gi|320009474|gb|ADW04324.1| transcriptional regulator, GntR family [Streptomyces flavogriseus ATCC 33331] Length = 136 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R L D ++ EA I+ + K + L + G+VE RG Sbjct: 22 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 77 >gi|239930388|ref|ZP_04687341.1| GntR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291438744|ref|ZP_06578134.1| GntR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291341639|gb|EFE68595.1| GntR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 150 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R L + D ++ EA ++ + K + L + G+VE RG Sbjct: 17 QIVQQTKQALR-LGEL-VPGDKLPTAREVVEATAVNPNTVLKAYRELEREGLVEARRG 72 >gi|269838401|ref|YP_003320629.1| Helix-turn-helix type 11 domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787664|gb|ACZ39807.1| Helix-turn-helix type 11 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 323 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 ++AE +S + + ++ L AG+ V RG RGG L D Sbjct: 19 MTARELAERLEVSPRTIQRDMEALSMAGVPVYAERGARGGWVL---PDDYR 66 >gi|254488156|ref|ZP_05101361.1| phosphonates metabolism transcriptional regulator PhnF [Roseobacter sp. GAI101] gi|214045025|gb|EEB85663.1| phosphonates metabolism transcriptional regulator PhnF [Roseobacter sp. GAI101] Length = 237 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D + +A ++ + L L + G+V RG GV + I V+ Sbjct: 27 GDKLPTEAVLAARFGVNRHTVRNALAHLAQDGLVHARRGA--GVFVTMTPTDYPIGRRVR 84 >gi|254439619|ref|ZP_05053113.1| transcriptional regulator, GntR family protein [Octadecabacter antarcticus 307] gi|198255065|gb|EDY79379.1| transcriptional regulator, GntR family protein [Octadecabacter antarcticus 307] Length = 242 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74 ++ ++++E +S + + L+ L ++ T RG GG + R QIT Sbjct: 27 DERLPSEAELSEQFAVSRSTVREALKRLAAQSLIRTQRGATGGAFVNRLTFEQAYGQQIT 86 Query: 75 ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118 ++ + + F C FA + PL L Sbjct: 87 TSALLLSMNDVDFDTACEARFALERACAPLSAQRRTADHLATMRAEI 133 >gi|184155876|ref|YP_001844216.1| transcriptional regulator [Lactobacillus fermentum IFO 3956] gi|227513960|ref|ZP_03944009.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|260662865|ref|ZP_05863759.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|183227220|dbj|BAG27736.1| transcriptional regulator [Lactobacillus fermentum IFO 3956] gi|227087671|gb|EEI22983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|260552946|gb|EEX25945.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 125 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +Q++ + I+ + K + LV G++E RGR Sbjct: 29 QAGDQVPSTTQLSASLNINPATVLKGMNQLVALGLLEKRRGRG 71 >gi|154499764|ref|ZP_02037802.1| hypothetical protein BACCAP_03421 [Bacteroides capillosus ATCC 29799] gi|150271362|gb|EDM98619.1| hypothetical protein BACCAP_03421 [Bacteroides capillosus ATCC 29799] Length = 143 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%) Query: 13 VLMYCAIHNDYPNRISQI-----AEACCISELFLFKILQPLVK---AGIVETVRGRRGGV 64 +L+ A QI A+ S + ++ L + AGI+ETVRG G Sbjct: 81 ILLLLARRPGQVFSARQIYEAVAADTYDASWTGISSMVYKLRRKLGAGIIETVRGH--GY 138 Query: 65 R 65 R Sbjct: 139 R 139 >gi|150399812|ref|YP_001323579.1| signal transduction protein [Methanococcus vannielii SB] gi|150012515|gb|ABR54967.1| putative signal transduction protein with CBS domains [Methanococcus vannielii SB] Length = 303 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LLQIYKEKNKAVKGTEIAVRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64 >gi|52079232|ref|YP_078023.1| GntR family transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52784597|ref|YP_090426.1| TreR [Bacillus licheniformis ATCC 14580] gi|319646989|ref|ZP_08001215.1| TreR protein [Bacillus sp. BT1B_CT2] gi|52002443|gb|AAU22385.1| transcriptional regulator (GntR family) [Bacillus licheniformis ATCC 14580] gi|52347099|gb|AAU39733.1| TreR [Bacillus licheniformis ATCC 14580] gi|317390813|gb|EFV71614.1| TreR protein [Bacillus sp. BT1B_CT2] Length = 238 Score = 36.1 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 16/71 (22%) Query: 1 MHLTKRTDYGIRVLMY--CAIH--------NDYPNRISQIAEACCISELFLFKILQPLVK 50 M + K +++Y A D + +AE S + K L L + Sbjct: 1 MKINKY------MMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQ 54 Query: 51 AGIVETVRGRR 61 G ++ ++G+ Sbjct: 55 NGYIQKIKGKG 65 >gi|253574432|ref|ZP_04851773.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846137|gb|EES74144.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 320 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 R++ + ++ + ++A+ +S + + LQ L + G+ + + G GG + Sbjct: 6 RLMELMMTVNRKRRFTVKELAQEFGVSSRTILRDLQELSELGVPLYSEVGPHGGYQ 61 >gi|229168948|ref|ZP_04296665.1| Transcriptional regulator mntR [Bacillus cereus AH621] gi|228614540|gb|EEK71648.1| Transcriptional regulator mntR [Bacillus cereus AH621] Length = 137 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 8 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 67 Query: 66 L 66 L Sbjct: 68 L 68 >gi|251795907|ref|YP_003010638.1| GntR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543533|gb|ACT00552.1| transcriptional regulator, GntR family [Paenibacillus sp. JDR-2] Length = 126 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L+ A+ D IA I+ + K + + G V T Sbjct: 29 RILLKWAVSGDKLPSRRDIAMQLNINPNTVQKAFKLMEDEGYVRTS 74 >gi|160934705|ref|ZP_02082091.1| hypothetical protein CLOLEP_03580 [Clostridium leptum DSM 753] gi|156866158|gb|EDO59530.1| hypothetical protein CLOLEP_03580 [Clostridium leptum DSM 753] Length = 304 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++Y + S +A +S +++ ++ L AGI + +GR GG+RL Sbjct: 9 ILYL-LMEGETVTASALARRLEVSPRTIYRDVEALSGAGIPIYMTKGRGGGIRL 61 >gi|323358764|ref|YP_004225160.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275135|dbj|BAJ75280.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 131 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCR 68 +++L+ A + +SQI A +S+ + K L+ L +A +V TVR G+ L Sbjct: 17 LQLLLDRATGGERGTSVSQIVSALGVSQPTVSKHLKVLREAQLV-TVREEGQHRYYSLAV 75 Query: 69 PADQ 72 Sbjct: 76 APLD 79 >gi|308187669|ref|YP_003931800.1| HTH-type transcriptional regulator yiaJ [Pantoea vagans C9-1] gi|308058179|gb|ADO10351.1| HTH-type transcriptional regulator yiaJ [Pantoea vagans C9-1] Length = 261 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++L + +IA+A + + +I+ L A +V + GG+RL Sbjct: 22 AAKILNALGEQPGG-MSLGEIAQAVELPRSTVQRIVAALDSAELVRSS--GAGGLRLG 76 >gi|254819966|ref|ZP_05224967.1| regulatory protein GntR, HTH [Mycobacterium intracellulare ATCC 13950] Length = 236 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73 S++ E +S L + + L +++ RG RGG R+ RP + + Sbjct: 28 SELMERFGVSRPTLREAFRVLESESLIQVQRGVRGGARVTRPRRETLARYAGLILEYEGV 87 Query: 74 TILDVVKA 81 T+ DV A Sbjct: 88 TVKDVYDA 95 >gi|297567239|ref|YP_003686211.1| MarR family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851688|gb|ADH64703.1| transcriptional regulator, MarR family [Meiothermus silvanus DSM 9946] Length = 208 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +L A D R+ +IAEA I+ ++ LV G+V RG Sbjct: 46 ILTLLAQKGDR--RLGEIAEALGITPATASDAVKVLVAKGLVVKNRGPG 92 >gi|118467208|ref|YP_881752.1| GntR family transcriptional regulator [Mycobacterium avium 104] gi|118168495|gb|ABK69392.1| regulatory protein GntR, HTH [Mycobacterium avium 104] Length = 246 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73 S++ E +S L + + L +++ RG RGG R+ RP + + Sbjct: 38 SELMERFGVSRPTLREAFRVLESESLIQVQRGVRGGARVTRPRRETLARYAGLILEYEGV 97 Query: 74 TILDVVKA 81 T+ DV A Sbjct: 98 TVKDVYDA 105 >gi|313905620|ref|ZP_07838982.1| transcriptional regulator, GntR family [Eubacterium cellulosolvens 6] gi|313469567|gb|EFR64907.1| transcriptional regulator, GntR family [Eubacterium cellulosolvens 6] Length = 126 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + ++A ++ + K L L + G+V++ R Sbjct: 29 RPGERLPSVRELAMDAAVNPNTMQKALAELERTGLVKSQR 68 >gi|312131035|ref|YP_003998375.1| transcriptional regulator, gntr family [Leadbetterella byssophila DSM 17132] gi|311907581|gb|ADQ18022.1| transcriptional regulator, GntR family [Leadbetterella byssophila DSM 17132] Length = 338 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I++++ IS L + K + L K GI+E +G+ Sbjct: 34 QQGDSMPSINELSFQTDISRLTVEKSYKELRKLGILEAFQGKG 76 >gi|153938156|ref|YP_001391477.1| GntR family transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152934052|gb|ABS39550.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum F str. Langeland] gi|295319502|gb|ADF99879.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum F str. 230613] Length = 497 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLKQNGLVTTIQGKG 73 >gi|110833229|ref|YP_692088.1| biotin-[acetyl-CoA-carboxylase] ligase [Alcanivorax borkumensis SK2] gi|110646340|emb|CAL15816.1| biotin-[acetyl-CoA-carboxylase] ligase [Alcanivorax borkumensis SK2] Length = 326 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 L+ + + S++ + IS ++K ++ L G+ +E+V+G+ G RL +P + Sbjct: 13 ALVRL-LSDGSFRSGSELGDELGISRAGVWKRVRRLTDFGLALESVKGK--GYRLAQPLE 69 Query: 72 QITILDVVK 80 I D+V+ Sbjct: 70 LIDP-DIVR 77 >gi|15615370|ref|NP_243673.1| manganese transport transcriptional regulator [Bacillus halodurans C-125] gi|20455069|sp|Q9K943|MNTR_BACHD RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|10175428|dbj|BAB06526.1| transcriptional regulator [Bacillus halodurans C-125] Length = 139 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K+ G++ T +G++ G R Sbjct: 13 IYLLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSDYLVYERYRGLILTAKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|146279508|ref|YP_001169666.1| putative signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145557749|gb|ABP72361.1| putative signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 243 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Query: 14 LMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ Y +SQ +A+A +S + + ++L+ L +AG++ +GR Sbjct: 167 LVGLGTQEGYACPLSQYLLADALGLSAVHINRVLRELREAGLMSFQKGR 215 >gi|116493387|ref|YP_805122.1| transcriptional regulator [Pediococcus pentosaceus ATCC 25745] gi|116103537|gb|ABJ68680.1| Transcriptional regulator [Pediococcus pentosaceus ATCC 25745] Length = 199 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +TD + L A + +I+E I + +I++ L KAG V Sbjct: 28 KTDNALETLKLLA--KETNVTPGRISEYLDIKPSSVTQIIKKLEKAGTV 74 >gi|317403940|gb|EFV84408.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 232 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 +L+ + P ++AE +S + LQ L +AG V T R G+ RL Sbjct: 28 ILLEHIAQGERPV--ERLAELSGLSVANASQHLQQLRRAGFVVTRREGKHVYYRLGSAP 84 >gi|256787834|ref|ZP_05526265.1| IclR family transcriptional regulator [Streptomyces lividans TK24] Length = 244 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 A D P R+ ++A+ + ++ +LQ L+ G V T Sbjct: 7 LAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 46 >gi|297203712|ref|ZP_06921109.1| DeoR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148482|gb|EDY55795.2| DeoR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 257 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 L+ A+ + P ++ ++E +S + + L L + G++ V G Sbjct: 10 HQLILRALRSGGPASVTDLSEQLGVSPATIRRDLVKLEEDGLLTRVHG 57 >gi|163744310|ref|ZP_02151670.1| Predicted transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161381128|gb|EDQ05537.1| Predicted transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 101 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 21/37 (56%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +A+ C +S+ + + L+ L +AG+V++ R Sbjct: 36 GGERSVGDLAQVCGLSQSTMSQQLKKLKEAGLVDSRR 72 >gi|119899455|ref|YP_934668.1| exoribonuclease II [Azoarcus sp. BH72] gi|288559235|sp|A1KAC6|Y3165_AZOSB RecName: Full=UPF0761 membrane protein azo3165 gi|119671868|emb|CAL95782.1| exoribonuclease II [Azoarcus sp. BH72] Length = 408 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +L A ++ P + + ++E +L+ L + GI R G L Sbjct: 286 AVEMLAALAEAQYDGRPVGFAALRRRTNLAEHAAEALLESLRECGI--ASRTEGGDWVLT 343 Query: 68 RPADQITILDVVK 80 R A I + V++ Sbjct: 344 RAASDIRLSAVLQ 356 >gi|148255432|ref|YP_001240017.1| AsnC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407605|gb|ABQ36111.1| transcriptional regulator, AsnC family [Bradyrhizobium sp. BTAi1] Length = 162 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L D R++++A+ IS+ + ++ L G+++++R Sbjct: 13 RILAEL--QADGRIRVNELADRVGISQPNCLRRVRTLRSRGVIKSIR 57 >gi|116662433|ref|YP_829486.1| ArsR family transcriptional regulator [Arthrobacter sp. FB24] gi|116613212|gb|ABK05905.1| transcriptional regulator, ArsR family [Arthrobacter sp. FB24] Length = 125 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 11 IRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 +R+L + P ++++A+A + + L L +G+V+T + GR Sbjct: 36 LRMLAEPTRLHLLWQLSTGPKTVTELADASGAPRTVVSQHLAKLRLSGLVDTRKDGRH 93 >gi|313884947|ref|ZP_07818699.1| transcriptional regulator, MarR family [Eremococcus coleocola ACS-139-V-Col8] gi|312619638|gb|EFR31075.1| transcriptional regulator, MarR family [Eremococcus coleocola ACS-139-V-Col8] Length = 145 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 V+ Y H I IS+ +++Q + + G +E V Sbjct: 23 HVVSYLGQHQAEDVFQKDIEAELEISKSVASQLVQRMERNGFIEVV 68 >gi|228980888|ref|ZP_04141192.1| Transcriptional regulator mntR [Bacillus thuringiensis Bt407] gi|228778824|gb|EEM27087.1| Transcriptional regulator mntR [Bacillus thuringiensis Bt407] Length = 137 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 8 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 67 Query: 66 L 66 L Sbjct: 68 L 68 >gi|54025176|ref|YP_119418.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016684|dbj|BAD58054.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 156 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +Y + L Y A D +++A S+ L + + K G+VE Sbjct: 40 TYVEYSV--LAYLAEPEDNRLTFAELAAKLEWSQSRLSHQITRMNKRGLVE 88 >gi|163939269|ref|YP_001644153.1| GntR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861466|gb|ABY42525.1| transcriptional regulator, GntR family [Bacillus weihenstephanensis KBAB4] Length = 126 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|322372051|ref|ZP_08046593.1| transcriptional regulator, TrmB [Haladaptatus paucihalophilus DX253] gi|320548473|gb|EFW90145.1| transcriptional regulator, TrmB [Haladaptatus paucihalophilus DX253] Length = 745 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 21/43 (48%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +Y A+ +++I+E+ + + ++ + L G VE + Sbjct: 29 VYLALIRGGKQSMTEISESSGVPKQRVYDTVSDLRNEGFVEVI 71 >gi|32265665|ref|NP_859697.1| hypothetical protein HH0166 [Helicobacter hepaticus ATCC 51449] gi|32261713|gb|AAP76763.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 150 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 12 RVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 R+L Y H QIA+ IS L + L+ L GI+ T +G+ Sbjct: 96 RLLAYLKNHKALLPTQTQRQIAQNLNISPESLSRTLKILKSKGILATTKGK 146 >gi|51245768|ref|YP_065652.1| transcriptional regulator [Desulfotalea psychrophila LSv54] gi|50876805|emb|CAG36645.1| related to transcriptional regulator [Desulfotalea psychrophila LSv54] Length = 271 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 ++E +S+ L + + L G+V +G GGV +CR Sbjct: 47 KDLSELFEVSKQTLRETINALEYMGLVTRKKGPGGGVYICR 87 >gi|323700153|ref|ZP_08112065.1| transcriptional regulator, AraC family [Desulfovibrio sp. ND132] gi|323460085|gb|EGB15950.1| transcriptional regulator, AraC family [Desulfovibrio desulfuricans ND132] Length = 284 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 10 GIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQ 46 +R + Y A H + ++AEA +S L ++ Q Sbjct: 182 AVRAVRDYLAAHLAEKVSLDELAEAASLSRCHLLRVFQ 219 >gi|323141553|ref|ZP_08076438.1| biotin--[acetyl-CoA-carboxylase] ligase [Phascolarctobacterium sp. YIT 12067] gi|322413965|gb|EFY04799.1| biotin--[acetyl-CoA-carboxylase] ligase [Phascolarctobacterium sp. YIT 12067] Length = 335 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 R+L P +I++ +S ++K +Q L G +E+V + G L Sbjct: 7 RILELLRNSKGTPVSGEEISKELEVSRTAIWKHIQALKNEGYEIESV--PKRGYILREVP 64 Query: 71 D 71 D Sbjct: 65 D 65 >gi|322517557|ref|ZP_08070426.1| adc operon repressor AdcR [Streptococcus vestibularis ATCC 49124] gi|322123817|gb|EFX95391.1| adc operon repressor AdcR [Streptococcus vestibularis ATCC 49124] Length = 151 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLC 67 +LM A + S++A+ +S+ + K ++ LVK G++E + + G L Sbjct: 46 HILMLLA---EGRKTNSELAKTLNVSQAAVTKAVKTLVKEGMLEAKKDKGDGRVTYFVLT 102 Query: 68 RPADQI 73 + A I Sbjct: 103 QEAQPI 108 >gi|300813652|ref|ZP_07093974.1| biotin--[acetyl-CoA-carboxylase] ligase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512194|gb|EFK39372.1| biotin--[acetyl-CoA-carboxylase] ligase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 327 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCRP 69 VL + ++A+ IS ++K + L G + +T RG +L Sbjct: 7 VLQELEKNRGRYISGQELADRLKISRTAIWKAINALKSDGFIIDSQTKRG----YKLDDA 62 Query: 70 ADQITI 75 +D I++ Sbjct: 63 SDMISV 68 >gi|258512837|ref|YP_003186271.1| transcriptional regulator, MarR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479563|gb|ACV59882.1| transcriptional regulator, MarR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 112 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + ++E + + L ++ L + G+VE R Sbjct: 25 LRILRALA---EGEQTAGALSERLGVRQNTLSHHMRQLREHGLVEVRR 69 >gi|269839197|ref|YP_003323889.1| hypothetical protein Tter_2166 [Thermobaculum terrenum ATCC BAA-798] gi|269790927|gb|ACZ43067.1| Helix-turn-helix type 11 domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 320 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++AE +SE + + ++ L AG+ + RG GG L Sbjct: 17 GKVTARELAEKLEVSERTIHRDMEALGMAGVPIYAQRGAGGGWAL 61 >gi|226363475|ref|YP_002781257.1| ArsR family transcriptional regulator [Rhodococcus opacus B4] gi|226241964|dbj|BAH52312.1| putative ArsR family transcriptional regulator [Rhodococcus opacus B4] Length = 119 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++++ + +A +SE + L L KAG+V++VR RP Sbjct: 45 LKLMSILLTASGGEVCTCDLATGVGLSESTVSHHLGQLKKAGMVQSVRRGMNVFYGARP 103 >gi|190894750|ref|YP_001985043.1| ArsR family transcriptional regulator(repressor of nodulation genes) [Rhizobium etli CIAT 652] gi|218515281|ref|ZP_03512121.1| transcriptional regulator protein (repressor of nodulation genes), ArsR family [Rhizobium etli 8C-3] gi|190700411|gb|ACE94493.1| transcriptional regulator protein (repressor of nodulation genes), ArsR family [Rhizobium etli CIAT 652] Length = 130 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +L + ++ +A+ +S+ + L L + G+V+T R Sbjct: 43 LHILHLL---TEGEVSVTDLADEVGLSQSSTSQHLAILREHGLVQTRR 87 >gi|169828566|ref|YP_001698724.1| hypothetical protein Bsph_3081 [Lysinibacillus sphaericus C3-41] gi|168993054|gb|ACA40594.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 314 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 +L++ + +IA+A IS + + L L G+ + +GR GG Sbjct: 10 ILLFVSAKKQ--FTAQEIADAFNISVRTVHRYLLDLSDMGLPIYAEQGRNGGY 60 >gi|167757082|ref|ZP_02429209.1| hypothetical protein CLORAM_02631 [Clostridium ramosum DSM 1402] gi|237735847|ref|ZP_04566328.1| transcriptional regulator [Mollicutes bacterium D7] gi|167703257|gb|EDS17836.1| hypothetical protein CLORAM_02631 [Clostridium ramosum DSM 1402] gi|229381592|gb|EEO31683.1| transcriptional regulator [Coprobacillus sp. D7] Length = 118 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 17/40 (42%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + ++A ++ + K L L + GI+ + R Sbjct: 29 LPGSKLASVRELALEYGVNPNTIQKALSELERTGIIYSRR 68 >gi|126651686|ref|ZP_01723889.1| hypothetical protein BB14905_13775 [Bacillus sp. B14905] gi|126591635|gb|EAZ85741.1| hypothetical protein BB14905_13775 [Bacillus sp. B14905] Length = 314 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 +L++ + +IA+A IS + + L L G+ + +GR GG Sbjct: 10 ILLFVSAKKQ--FTAQEIADAFNISVRTVHRYLLDLSDMGLPIYAEQGRNGGY 60 >gi|158520031|ref|YP_001527901.1| putative ribonuclease BN [Desulfococcus oleovorans Hxd3] gi|158508857|gb|ABW65824.1| putative ribonuclease BN [Desulfococcus oleovorans Hxd3] Length = 450 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 9 YGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG- 63 YG+ +L+ + + P QI+ + + ++L+ L AG+ +T+ G G Sbjct: 329 YGLYVAHLLVKTFKNGEPPLTADQISARLDLPIRMVNRLLETLSAAGLATQTLSGTGGDP 388 Query: 64 -VRLCRPADQITILDVVKATE 83 + R ITI +A + Sbjct: 389 AWQPGRDITDITIASATEAMD 409 >gi|75675087|ref|YP_317508.1| ArsR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419957|gb|ABA04156.1| transcriptional regulator, ArsR family [Nitrobacter winogradskyi Nb-255] Length = 131 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM ++ + +++I A I + L + L L KA +V T R Sbjct: 27 LMILSLLREGEKSVTEIDAATGIGQPALSQQLAELRKAELVTTRR 71 >gi|39935334|ref|NP_947610.1| hypothetical protein RPA2265 [Rhodopseudomonas palustris CGA009] gi|39649186|emb|CAE27706.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 331 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L + ++AEAC +S +++ + L +G+ V RG GG RL Sbjct: 8 ASRMLSILTTLQAKGRVTAPELAEACEVSVRTIYRDIDALAASGVPVYADRGAEGGYRL 66 >gi|324998220|ref|ZP_08119332.1| transcriptional regulator-like protein [Pseudonocardia sp. P1] Length = 161 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL + ++ ++A C +S+ + +I+ L K G+VE Sbjct: 49 VLSRLSAAPGRRMQMQELARRCFVSKSGISQIVTQLAKDGLVE 91 >gi|307328923|ref|ZP_07608092.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] gi|306885433|gb|EFN16450.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] Length = 319 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +A+ ++ + + + L + G V + G GG +L Sbjct: 22 SGADLADRLGVTPRTVRRDVDRLRELGYPVHSAPGTGGGYQLG 64 >gi|304437118|ref|ZP_07397080.1| two component system response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369877|gb|EFM23540.1| two component system response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 254 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 16/39 (41%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 Y + + + H P + ++A +S +L K+ Sbjct: 152 YLLHAVRHIEAHMAEPITVREVAGELGLSVSYLHKLFAR 190 >gi|296877266|ref|ZP_06901306.1| cyclic nucleotide-binding domain protein [Streptococcus parasanguinis ATCC 15912] gi|296431786|gb|EFH17593.1| cyclic nucleotide-binding domain protein [Streptococcus parasanguinis ATCC 15912] Length = 228 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 27/54 (50%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 H + + L +C + +++Q+A IS L ++++ +++ G+V+ Sbjct: 148 HYSVKERLATHFLEHCDENGTLKPKMNQLALRFGISYRHLSRVIKQMIEEGLVQ 201 >gi|227486313|ref|ZP_03916629.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235724|gb|EEI85739.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 124 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + ++T I Y + D + ++++ I++ + K + L GI++T G Sbjct: 14 MQIVEQTKVAI-AAGYL-QNGDKFPSVRELSKELLINQTTVSKAFKELSSQGIIKTQPGI 71 Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87 + L I + + EE Sbjct: 72 GTVIELNSEKIDIKRDEFIDKLEEDLS 98 >gi|182435540|ref|YP_001823259.1| ArsR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464056|dbj|BAG18576.1| putative ArsR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 133 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++++ R Sbjct: 47 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 94 >gi|73541002|ref|YP_295522.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118415|gb|AAZ60678.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 240 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71 Q+A+ +S + ++ + L G+VET +G G +L R D Sbjct: 28 GSRLPTGRQLADQYGVSAAVIREVTEHLRSQGLVETRQGVGCTVRSRTGSAGFQLPREPD 87 >gi|154245643|ref|YP_001416601.1| GntR domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159728|gb|ABS66944.1| GntR domain protein [Xanthobacter autotrophicus Py2] Length = 513 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Query: 8 DYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L A QIAE +S + + L+ L AG + +++G Sbjct: 45 RLAVRLLTLMASGRLPPGARLPPERQIAETVSVSRVCVRTALERLKSAGYLRSIQGSG 102 >gi|88854536|ref|ZP_01129203.1| putative GntR-family transcriptional regulator [marine actinobacterium PHSC20C1] gi|88816344|gb|EAR26199.1| putative GntR-family transcriptional regulator [marine actinobacterium PHSC20C1] Length = 247 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + ++A +S + + L AG + + RGR GG Sbjct: 37 LVGPGERLPAERELATMLAVSRDTVRDAIASLSDAGYLVSRRGRYGG 83 >gi|332522546|ref|ZP_08398798.1| transcriptional regulator, MarR family [Streptococcus porcinus str. Jelinkova 176] gi|332313810|gb|EGJ26795.1| transcriptional regulator, MarR family [Streptococcus porcinus str. Jelinkova 176] Length = 150 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 21/46 (45%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 VL++ + + + + I IS+ +++ + K G +E + Sbjct: 37 HVLIFLSRNFERELFVKDIETELGISKSVASNLVKRMEKNGFIEVI 82 >gi|320531166|ref|ZP_08032156.1| transcriptional regulator, MarR family [Actinomyces sp. oral taxon 171 str. F0337] gi|320136615|gb|EFW28573.1| transcriptional regulator, MarR family [Actinomyces sp. oral taxon 171 str. F0337] Length = 143 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 TDY R L + +D+ RIS +A +++ +++ L G+V Sbjct: 35 TDY--RALALLSRASDHELRISDLAVRVGLNQSSTTRLVGRLELKGLVT 81 >gi|288553351|ref|YP_003425286.1| manganese transport transcriptional regulator [Bacillus pseudofirmus OF4] gi|288544511|gb|ADC48394.1| manganese transport transcriptional regulator [Bacillus pseudofirmus OF4] Length = 140 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I + R+S IAEA + + K++Q L K+ G+V T +G++ G R Sbjct: 13 IYILIEDKGYARVSDIAEALEVHPSSVTKMVQKLDKSEYLIYERYRGLVLTAKGKKVGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|229822189|ref|YP_002883715.1| IclR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568102|gb|ACQ81953.1| transcriptional regulator, IclR family [Beutenbergia cavernae DSM 12333] Length = 257 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ + P +++I+ + + L K+L L + G V+T Sbjct: 24 VLELLAQSPEPLTMTEISRRLSVPKSSLHKLLGTLERRGWVQT 66 >gi|91773442|ref|YP_566134.1| iron dependent repressor [Methanococcoides burtonii DSM 6242] gi|91712457|gb|ABE52384.1| iron dependent repressor [Methanococcoides burtonii DSM 6242] Length = 143 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 1 MHLTK-RT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M+LT RT DY ++ + I + + IA +S + + + L K G + Sbjct: 1 MYLTTERTEDY-LKA-IDTIIEKKGYSLVKDIARFLDVSPSSVTGMFKKLTKEGFINCE- 57 Query: 59 GRRGGVRLCRPADQ 72 + GGV L + Sbjct: 58 -KYGGVTLAPDGRK 70 >gi|328946034|gb|EGG40180.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK1087] Length = 311 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ +S ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|325696613|gb|EGD38502.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK160] Length = 311 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ +S ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|325687938|gb|EGD29958.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK72] Length = 311 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ +S ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|324990825|gb|EGC22760.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK353] Length = 311 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ +S ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|323351731|ref|ZP_08087385.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis VMC66] gi|322122217|gb|EFX93943.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis VMC66] Length = 311 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ +S ++K +Q L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59 >gi|326778367|ref|ZP_08237632.1| transcriptional regulator, GntR family [Streptomyces cf. griseus XylebKG-1] gi|326658700|gb|EGE43546.1| transcriptional regulator, GntR family [Streptomyces cf. griseus XylebKG-1] Length = 138 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R L D ++ EA I+ + K + L + G+VE RG Sbjct: 22 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 77 >gi|295696695|ref|YP_003589933.1| hypothetical protein Btus_2106 [Bacillus tusciae DSM 2912] gi|295412297|gb|ADG06789.1| hypothetical protein Btus_2106 [Bacillus tusciae DSM 2912] Length = 356 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 R L+ A + ++S+I+E +S+ + ++ + G Sbjct: 34 RALVVLA--SAQKMKVSEISELYHLSQEHIRHVIHAFNQHGF 73 >gi|126651591|ref|ZP_01723794.1| hypothetical protein BB14905_13300 [Bacillus sp. B14905] gi|126591540|gb|EAZ85646.1| hypothetical protein BB14905_13300 [Bacillus sp. B14905] Length = 315 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 + ++ I ++A+ C +S + + L L + G+ + + G GG R+ R Sbjct: 10 LMMKVNERKKFTIQEMADECGVSRRTMIRDLMELSELGVPLYSEAGPNGGYRVLRE 65 >gi|220931123|ref|YP_002508031.1| regulatory protein ArsR [Halothermothrix orenii H 168] gi|219992433|gb|ACL69036.1| regulatory protein ArsR [Halothermothrix orenii H 168] Length = 97 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +IA IS+ + L L AG+VE R Sbjct: 25 KESDLTAGEIASEFDISKPSISHHLNILKNAGLVEARR 62 >gi|293400439|ref|ZP_06644585.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306839|gb|EFE48082.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 327 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 MHL + + ++Y ++ ++AE +S +++ + L AGI + T +G Sbjct: 1 MHLQRLFE-----IVYLLLYR-KKVTAKELAERFEVSTRTIYRDIDTLSAAGIPIYTNKG 54 Query: 60 RRGGVRL 66 + GG+ L Sbjct: 55 KDGGIFL 61 >gi|259047222|ref|ZP_05737623.1| biotin--[acetyl-CoA-carboxylase] ligase BirA [Granulicatella adiacens ATCC 49175] gi|259036272|gb|EEW37527.1| biotin--[acetyl-CoA-carboxylase] ligase BirA [Granulicatella adiacens ATCC 49175] Length = 330 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75 D P IA+ +S ++K +Q L K G + + + G +L R D +T+ Sbjct: 16 DKPLSGQDIADQLKLSRTAVWKAIQQLKKDGYEITSS--TKVGYQLSRQTDLLTL 68 >gi|254488478|ref|ZP_05101683.1| transcriptional regulator, ArsR family [Roseobacter sp. GAI101] gi|214045347|gb|EEB85985.1| transcriptional regulator, ArsR family [Roseobacter sp. GAI101] Length = 114 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 13/97 (13%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + VL I I IS L ++ LV AG+V+ R Sbjct: 27 LHVLRILVRAGPEGLTIGTIGRRSGISGSTLTHHVKLLVAAGLVQQQR----------QG 76 Query: 71 DQITILDVVK-ATEE--SFFVAECFASHKIDCPLVGS 104 I V A + F + EC A CP Sbjct: 77 RSIICAAVAHDAVHDLSRFLLTECCADADTPCPDHTH 113 >gi|295840501|ref|ZP_06827434.1| DeoR-family transcriptional regulator [Streptomyces sp. SPB74] gi|197696578|gb|EDY43511.1| DeoR-family transcriptional regulator [Streptomyces sp. SPB74] Length = 327 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + ++A ++ + + ++ L G V ++G GG RL Sbjct: 5 LQRGRNWSGPELAARLGVTARTVRRDVERLRALGYPVHALQGVGGGYRLG 54 >gi|4731015|gb|AAD28343.1|AF102509_1 regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 245 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 15 MYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ + +D P + +A ++ + + + L L + +VET RGR GG + RPA Sbjct: 27 IHLGLLDDGERLPVEV-DLAAQFGVAPMTVREALATLRELELVETRRGRSGGSFVRRPA 84 >gi|325920322|ref|ZP_08182259.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549184|gb|EGD20101.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 298 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +AE I + + + L + G ++ G GG RL + A + +L EE + Sbjct: 3 LAERLEIHPRSVRRDIDRLRELGYPIQAAPGTGGGYRLGQGAAALPLL-----FEEDEAL 57 Query: 89 A 89 Sbjct: 58 T 58 >gi|293610115|ref|ZP_06692416.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827347|gb|EFF85711.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124287|gb|ADY83810.1| transcriptional regulator, IclR family [Acinetobacter calcoaceticus PHEA-2] Length = 257 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ I ++ + + I E +S+ ++ L+ LV A +++ + G Sbjct: 1 MAISSFGK--ILTVLDLFSVSRPIINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I +LD + + T+ ++ F + ++ C L + L Sbjct: 59 SGDYTLG---SKIAVLDYISRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107 >gi|228943453|ref|ZP_04105897.1| transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976292|ref|ZP_04136763.1| transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783396|gb|EEM31504.1| transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816233|gb|EEM62414.1| transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 219 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++ + + ++AE IS + + L+ L G++E++ G Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLIESIPG 71 >gi|229015975|ref|ZP_04172936.1| Transcriptional regulator, DeoR [Bacillus cereus AH1273] gi|229022192|ref|ZP_04178742.1| Transcriptional regulator, DeoR [Bacillus cereus AH1272] gi|228739123|gb|EEL89569.1| Transcriptional regulator, DeoR [Bacillus cereus AH1272] gi|228745335|gb|EEL95376.1| Transcriptional regulator, DeoR [Bacillus cereus AH1273] Length = 313 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +L++ + +IA+ IS + + + L G+ + +GR GG + Sbjct: 10 ILIFASAK--RTFTAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|20093126|ref|NP_619201.1| iron dependent repressor [Methanosarcina acetivorans C2A] gi|19918464|gb|AAM07681.1| iron dependent repressor [Methanosarcina acetivorans C2A] Length = 224 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 13/122 (10%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +Y + ++Y N P + QIAE +S + ++++ L G VE GV L Sbjct: 11 EY-LETILYLITKNQGPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYK--PYQGVELT 67 Query: 68 RPADQITIL-----DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 + + V++ + +H+ C L +V L +D L Sbjct: 68 EKGAEEAVRIKRKHQVLETFLADVLDFDRKEAHREACELE-----HAVSDSVLERLYDFL 122 Query: 123 TQ 124 Sbjct: 123 GN 124 >gi|115467332|ref|NP_001057265.1| Os06g0240800 [Oryza sativa Japonica Group] gi|51535174|dbj|BAD37886.1| putative O-methyltransferase [Oryza sativa Japonica Group] gi|51535782|dbj|BAD37839.1| putative O-methyltransferase [Oryza sativa Japonica Group] gi|113595305|dbj|BAF19179.1| Os06g0240800 [Oryza sativa Japonica Group] gi|125596656|gb|EAZ36436.1| hypothetical protein OsJ_20767 [Oryza sativa Japonica Group] Length = 344 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 8/52 (15%) Query: 10 GIRVLMYC----AIHN-DYPNRISQIAEACCISE---LFLFKILQPLVKAGI 53 +R AIH IS IA + L +I++ L AGI Sbjct: 33 ALRCAADLGVPSAIHRRGGAATISDIAADTGVHPAKLPHLRRIMRVLTVAGI 84 >gi|62390392|ref|YP_225794.1| ArsR family regulatory protein [Corynebacterium glutamicum ATCC 13032] gi|41411213|emb|CAF21518.2| Bacterial regulatory proteins, ArsR family [Corynebacterium glutamicum ATCC 13032] Length = 119 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L A P ++++ + +S+ + L+ + +AG ++ Sbjct: 44 LRILSQLAAGGCGPVSVNELTDLMGLSQPTISHHLKKMTEAGFLD 88 >gi|154244130|ref|YP_001415088.1| GntR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158215|gb|ABS65431.1| transcriptional regulator, GntR family [Xanthobacter autotrophicus Py2] Length = 311 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%) Query: 22 DYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 P Q+A+ +S + +L + + G+V GRR RL R Sbjct: 24 GAPMTSETQLAQTLGVSRTTVRAVLALMSETGLVTASEGRR---RLARHP 70 >gi|19745367|ref|NP_606503.1| hypothetical protein spyM18_0213 [Streptococcus pyogenes MGAS8232] gi|21909698|ref|NP_663966.1| hypothetical protein SpyM3_0162 [Streptococcus pyogenes MGAS315] gi|28895081|ref|NP_801431.1| hypothetical protein SPs0169 [Streptococcus pyogenes SSI-1] gi|50913572|ref|YP_059544.1| MarR family transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|56807996|ref|ZP_00365805.1| COG1846: Transcriptional regulators [Streptococcus pyogenes M49 591] gi|71902855|ref|YP_279658.1| MarR family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71910009|ref|YP_281559.1| MarR family transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|94987827|ref|YP_595928.1| MarR family transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94989703|ref|YP_597803.1| MarR family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94991704|ref|YP_599803.1| MarR family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|94993586|ref|YP_601684.1| MarR family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|139473055|ref|YP_001127770.1| MarR family transcriptional regulator [Streptococcus pyogenes str. Manfredo] gi|306828061|ref|ZP_07461326.1| MarR family transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|19747473|gb|AAL97002.1| hypothetical protein spyM18_0213 [Streptococcus pyogenes MGAS8232] gi|21903881|gb|AAM78769.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810326|dbj|BAC63264.1| hypothetical protein [Streptococcus pyogenes SSI-1] gi|50902646|gb|AAT86361.1| Transcriptional regulator, MarR family [Streptococcus pyogenes MGAS10394] gi|71801950|gb|AAX71303.1| transcriptional regulator, MarR family [Streptococcus pyogenes MGAS6180] gi|71852791|gb|AAZ50814.1| transcriptional regulator, MarR family [Streptococcus pyogenes MGAS5005] gi|94541335|gb|ABF31384.1| transcriptional regulator, MarR family [Streptococcus pyogenes MGAS9429] gi|94543211|gb|ABF33259.1| Transcriptional regulator, MarR family [Streptococcus pyogenes MGAS10270] gi|94545212|gb|ABF35259.1| Transcriptional regulator, MarR family [Streptococcus pyogenes MGAS2096] gi|94547094|gb|ABF37140.1| Transcriptional regulator, MarR family [Streptococcus pyogenes MGAS10750] gi|134271301|emb|CAM29518.1| MarR family regulatory protein [Streptococcus pyogenes str. Manfredo] gi|304429777|gb|EFM32821.1| MarR family transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 149 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 VL++ A H + + I + IS+ +++ +VK G + Sbjct: 38 VLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFI 79 >gi|307326875|ref|ZP_07606066.1| putative transcriptional regulator, ArsR family [Streptomyces violaceusniger Tu 4113] gi|306887411|gb|EFN18406.1| putative transcriptional regulator, ArsR family [Streptomyces violaceusniger Tu 4113] Length = 363 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 21/37 (56%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 P S++A+ +++ + + L+ L AG++E+ R Sbjct: 300 GEPITTSELAQRMGLADTQVSRTLRQLRDAGLIESER 336 >gi|255532122|ref|YP_003092494.1| regulatory protein GntR [Pedobacter heparinus DSM 2366] gi|255345106|gb|ACU04432.1| regulatory protein GntR HTH [Pedobacter heparinus DSM 2366] Length = 228 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++AEA +S L + L L G++ET + R G+ L RP Sbjct: 46 ELAEALDVSRNVLREALSRLRMLGMIETKKKR--GMILARP 84 >gi|332976050|gb|EGK12920.1| DeoR family transcriptional regulator [Desmospora sp. 8437] Length = 314 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R++ + ++ ++ ++A+ +S+ + + L+ L + G+ + + G GG ++ R Sbjct: 6 RLMELMMTVNRKRRFKVQELADEFGVSKRTILRDLRELSELGVPLYSEVGPHGGYQVIRE 65 >gi|330875909|gb|EGH10058.1| GntR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 244 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + +T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIVTVADVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|312194615|ref|YP_004014676.1| MarR family transcriptional regulator [Frankia sp. EuI1c] gi|311225951|gb|ADP78806.1| regulatory protein MarR [Frankia sp. EuI1c] Length = 200 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 26/43 (60%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL+ A D R+S++A+A +S L +++ LVK G+VE Sbjct: 79 VLVQLAETPDGALRMSELADAVLLSRSGLTRLVDRLVKEGLVE 121 >gi|227541205|ref|ZP_03971254.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227183049|gb|EEI64021.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 197 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L + P + ++ E +S+ + L+ L + G+++ VR Sbjct: 126 LRLLSQLSAEGCGPVSVGELTETSGLSQPTVSHHLKRLTETGLLDKVR 173 >gi|187919091|ref|YP_001888122.1| IclR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717529|gb|ACD18752.1| transcriptional regulator, IclR family [Burkholderia phytofirmans PsJN] Length = 250 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ +++D P ++ IA+ + + L ++L L G+V G++ + Q Sbjct: 13 ALLEHLVNSDGPVSLADIAQDVALPKASLHRMLASLEAGGLVIREPGQKNAYVIGPRLAQ 72 Query: 73 ITILDVVK 80 + + V+ Sbjct: 73 LALGVVMH 80 >gi|167752880|ref|ZP_02425007.1| hypothetical protein ALIPUT_01142 [Alistipes putredinis DSM 17216] gi|167659949|gb|EDS04079.1| hypothetical protein ALIPUT_01142 [Alistipes putredinis DSM 17216] Length = 456 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 19/117 (16%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC----RPADQIT 74 N+ + ++ + + +L LV+ G++ +R + R ++T Sbjct: 324 RENEGALPVDELRRRLSLPTRIVNDVLHQLVRTGLLIEIRNPDDDREVAFAPGRDIHEMT 383 Query: 75 ILDVVK-------------ATEESFFVAECFASHKIDCPLVGSCGLTSV-LRKALNA 117 + ++ + ATEE+ + + C G L + L A+NA Sbjct: 384 LYNIFRTIDNYSSTRLYFAATEETRRIDRALDELQTACRTAGD-RLRLIDLDDAVNA 439 >gi|163758590|ref|ZP_02165677.1| putative nodulation protein [Hoeflea phototrophica DFL-43] gi|162283880|gb|EDQ34164.1| putative nodulation protein [Hoeflea phototrophica DFL-43] Length = 98 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ C + ++ +AE +S+ L + L L G+V T R Sbjct: 26 RLLILCNLARGE-VQVGVLAERVQLSQSALSQHLAKLRNQGLVSTRR 71 >gi|158520550|ref|YP_001528420.1| hypothetical protein Dole_0533 [Desulfococcus oleovorans Hxd3] gi|158509376|gb|ABW66343.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3] Length = 183 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++ +T IR+L+ + + + + ++A+ +S + + L L K G++ + + Sbjct: 9 ISSKTR--IRLLVRFFFNPEARSYLRELAKELDVSTNAVREELNQLRKTGLLTSEK 62 >gi|126436720|ref|YP_001072411.1| GntR family transcriptional regulator [Mycobacterium sp. JLS] gi|126236520|gb|ABN99920.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS] Length = 246 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73 S++ E +S L + + L +++ RG RGG R+ RP + + Sbjct: 38 SELMERFGVSRPTLREAFRVLESESLIQVQRGVRGGARVTRPRRETLARYAGLILEYEGV 97 Query: 74 TILDVVKA 81 T+ DV A Sbjct: 98 TVKDVYDA 105 >gi|84489206|ref|YP_447438.1| transcriptional regulator [Methanosphaera stadtmanae DSM 3091] gi|84372525|gb|ABC56795.1| predicted transcriptional regulator [Methanosphaera stadtmanae DSM 3091] Length = 295 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + IA+ + + +Q L G+V+ V G RGG + Sbjct: 25 VKCESIADLMGRNSGTIRNQMQSLRSLGLVQGVPGPRGGYK 65 >gi|333010447|gb|EGK29880.1| transcriptional regulator, GntR family [Shigella flexneri VA-6] Length = 304 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + GI+ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSQLRECGILTQV---GNDYVIARKPD 72 >gi|326776177|ref|ZP_08235442.1| transcriptional regulator, ArsR family [Streptomyces cf. griseus XylebKG-1] gi|326656510|gb|EGE41356.1| transcriptional regulator, ArsR family [Streptomyces cf. griseus XylebKG-1] Length = 133 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++++ R Sbjct: 47 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 94 >gi|285019900|ref|YP_003377611.1| hypothetical protein XALc_3138 [Xanthomonas albilineans GPE PC73] gi|283475118|emb|CBA17617.1| hypothetical protein XALc_3138 [Xanthomonas albilineans] Length = 99 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR----- 65 VL A + ++A I+E + +I+ L AG+++ R GR+ R Sbjct: 14 HVLFCLAADPQQ--TLREVATKVGITERAVQRIVAELEAAGVLQRQRDGRQNTYRIVRGV 71 Query: 66 -LCRPADQ-ITILDVVKAT 82 L P + I D++ Sbjct: 72 PLRHPLEAHCRIGDLIDVV 90 >gi|39996726|ref|NP_952677.1| GntR family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39983607|gb|AAR35000.1| transcriptional regulator, GntR family [Geobacter sulfurreducens PCA] gi|298505737|gb|ADI84460.1| transcriptional regulator, GntR family [Geobacter sulfurreducens KN400] Length = 241 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++AE +S + + L L AG+VE+ +G Sbjct: 31 GEKLPPERELAEMFGVSRPSVREALNILAAAGLVESYQGGG 71 >gi|222053928|ref|YP_002536290.1| ribonuclease BN [Geobacter sp. FRC-32] gi|221563217|gb|ACM19189.1| ribonuclease BN [Geobacter sp. FRC-32] Length = 440 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + +L A P ++AE+ + + ++L L +G + G Sbjct: 316 ALSILQEVATAFHLGSPPLTKERLAESLDVPIRLVRELLIQLTDSGYLIRSAGELSSYYP 375 Query: 67 CRPADQITILDVVKATEE 84 R +QI + +V+ + Sbjct: 376 ARELEQIPVNEVLSSLRG 393 >gi|254380787|ref|ZP_04996153.1| regulatory protein [Streptomyces sp. Mg1] gi|194339698|gb|EDX20664.1| regulatory protein [Streptomyces sp. Mg1] Length = 316 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILD 77 D P +Q+A +S + + L L AG+V R GR R A T+L Sbjct: 258 DMPASTTQLAHRTGLSPAGVSQYLTALRNAGLVSAHRAGRSVLY--ARTAAAETLLQ 312 >gi|158424909|ref|YP_001526201.1| putative transcription regulator protein [Azorhizobium caulinodans ORS 571] gi|158331798|dbj|BAF89283.1| putative transcription regulator protein [Azorhizobium caulinodans ORS 571] Length = 334 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +Q+A+ +S + +L L +AG+V GRR +L R Sbjct: 24 GARLGSEAQLAQVLEVSRTTVRAVLAALAEAGLVTAEAGRR---QLARHP 70 >gi|108757345|ref|YP_635604.1| ArsR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108461225|gb|ABF86410.1| transcriptional regulator, ArsR family [Myxococcus xanthus DK 1622] Length = 108 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 R ++ + D P IAE +S + + L+ L+ AG+V R GR RL Sbjct: 18 RRMLDLLVDGDRPVNS--IAENFEMSRPAVSQHLRVLLDAGLVTEQRHGRERRYRL 71 >gi|86356719|ref|YP_468611.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280821|gb|ABC89884.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 109 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 A + ++++A+ +S+ + K L+ L +AG++ + R R+ PA TI Sbjct: 21 LARLANGKATVAELADPFELSQPAISKHLKVLEQAGLIRSGREANSRPRILEPAALKTIA 80 Query: 77 D 77 D Sbjct: 81 D 81 >gi|16799818|ref|NP_470086.1| hypothetical protein lin0743 [Listeria innocua Clip11262] gi|16413195|emb|CAC95975.1| lin0743 [Listeria innocua Clip11262] Length = 125 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 D + ++A ++ + + L +AGI+ TVRG G L +I Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGT--GKYLTEDKRRI 79 >gi|313498376|gb|ADR59742.1| Regulatory protein GntR HTH [Pseudomonas putida BIRD-1] Length = 262 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 11 IRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +R + H + + + +A+ ++ L + L L + G+V+T GR GG Sbjct: 31 LRTAIDLGFLQHGEMLPKEALLAKELHVTAFTLREALAQLREEGLVDTKPGRGGG 85 >gi|312868158|ref|ZP_07728362.1| cyclic nucleotide-binding domain protein [Streptococcus parasanguinis F0405] gi|311096562|gb|EFQ54802.1| cyclic nucleotide-binding domain protein [Streptococcus parasanguinis F0405] Length = 210 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 27/54 (50%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 H + + L +C + +++Q+A IS L ++++ +++ G+V+ Sbjct: 130 HYSVKERLATHFLEHCDENGTLKPKMNQLALRFGISYRHLSRVIKQMIEEGLVQ 183 >gi|291550802|emb|CBL27064.1| Transcriptional regulators [Ruminococcus torques L2-14] Length = 367 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +++E +S + + L+ LVK IVE+ RG Sbjct: 21 VSGEKLPSEQELSEQFQVSRQTVRRALEELVKENIVESRRGSG 63 >gi|288959597|ref|YP_003449938.1| transcriptional regulator [Azospirillum sp. B510] gi|288911905|dbj|BAI73394.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Query: 3 LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L + T + R+L+ + ++A+ + L L L +AG++ + R Sbjct: 13 LAQETRLAVFRLLITVGPNG---LTAGEVAQQVGVPASTLSHHLATLERAGLLRSWR 66 >gi|239942208|ref|ZP_04694145.1| ArsR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 372 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P ++AE+ I+ + + L L KAG+V T R RG L Sbjct: 310 SPYTTGELAESHSITAPEVSRHLSVLKKAGLVTTRR--RGRYVL 351 >gi|226359430|ref|YP_002777207.1| arsenic resistance operon repressor ArsR [Rhodococcus opacus B4] gi|226237914|dbj|BAH48262.1| putative arsenic resistance operon repressor ArsR [Rhodococcus opacus B4] Length = 130 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I+ +S+ + L+ L AG+++ R Sbjct: 42 LRLLSLIASHAGGEACVCDISATIDLSQPTISHHLKVLRAAGLLDCER 89 >gi|297204628|ref|ZP_06922025.1| GntR regulatory protein [Streptomyces sviceus ATCC 29083] gi|197710696|gb|EDY54730.1| GntR regulatory protein [Streptomyces sviceus ATCC 29083] Length = 267 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 14/64 (21%) Query: 32 EACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI--------------TILD 77 E IS L + + L ++ RG GG R+ P + T+ D Sbjct: 61 EQFGISRPTLREAFRVLESESLITVRRGAHGGARVSAPDSDVAARFAGLILEYRGATLGD 120 Query: 78 VVKA 81 + +A Sbjct: 121 IYRA 124 >gi|254427833|ref|ZP_05041540.1| biotin-(acetyl-CoA-carboxylase) ligase [Alcanivorax sp. DG881] gi|196194002|gb|EDX88961.1| biotin-(acetyl-CoA-carboxylase) ligase [Alcanivorax sp. DG881] Length = 320 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVK 80 S++ E IS ++K +Q L G+ +E+V+G+ G RL +P + I D+V+ Sbjct: 19 SGSELGEVLGISRAGVWKRVQRLADFGLTLESVKGK--GYRLAQPLELID-SDIVQ 71 >gi|313607560|gb|EFR83856.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208] Length = 238 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%) Query: 2 HLTKRTD--YGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAG 52 LT R Y + L+ + +A+ S+ + K+L L + G Sbjct: 144 KLTSRESIYYSLNTLIELGLRISEKVVELPGFLTYQILADHANTSKSYTSKVLGYLRQEG 203 Query: 53 IVETVR 58 I+E+ + Sbjct: 204 ILESQK 209 >gi|307571718|emb|CAR84897.1| cyclic nucleotide-binding family protein [Listeria monocytogenes L99] Length = 238 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%) Query: 2 HLTKRTD--YGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAG 52 LT R Y + L+ + +A+ S+ + K+L L + G Sbjct: 144 KLTSRESIYYSLNTLIELGLRISEKVVELPGFLTYQILADHANTSKSYTSKVLGYLRQEG 203 Query: 53 IVETVR 58 I+E+ + Sbjct: 204 ILESQK 209 >gi|302552335|ref|ZP_07304677.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302469953|gb|EFL33046.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 348 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 N S++A +S +++ ++ L AG+ V RG GG RL Sbjct: 14 QNRGRMTASELAAELEVSVRTVYRDVEALGAAGVPVCADRGPEGGYRL 61 >gi|300789860|ref|YP_003770151.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799374|gb|ADJ49749.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 196 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 + L+ H + I+++AEAC +S + + ++ LV GI+E R GR RL + Sbjct: 19 LLALVLL--HPEREYSITELAEACGVSPTAVLREVERLVGGGILEDRRVGRS---RLVKA 73 Query: 70 ADQITIL----DVVKATEESFFV 88 + +V+ T + Sbjct: 74 RTDTPLYRPLSEVIAITFGPLPL 96 >gi|262377840|ref|ZP_06071055.1| transcriptional repressor for L-lactate utilization [Acinetobacter lwoffii SH145] gi|262307230|gb|EEY88378.1| transcriptional repressor for L-lactate utilization [Acinetobacter lwoffii SH145] Length = 247 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + +R+L+ + Q+ E +S L + +Q L+ AGI+++ Sbjct: 1 MKVSDKVVQRLRLLIEKNNVQVGERLPAERQLCEQLGVSRSSLREAIQQLITAGIIQSKA 60 Query: 59 GRRGGVRLCRPADQITILDVVK 80 G G L + + +V+ Sbjct: 61 GA--GTYLKQLPAHWSQYQIVE 80 >gi|290894420|ref|ZP_06557382.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556040|gb|EFD89592.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 238 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%) Query: 2 HLTKRTD--YGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAG 52 LT R Y + L+ + +A+ S+ + K+L L + G Sbjct: 144 KLTSRESIYYSLNTLIELGLRISEKVVELPGFLTYQILADHANTSKSYTSKVLGYLRQEG 203 Query: 53 IVETVR 58 I+E+ + Sbjct: 204 ILESQK 209 >gi|239926649|ref|ZP_04683602.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 379 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGGV 64 +R LM + ++IA IS+ + ++ L +AG++ T RGR G Sbjct: 20 LRALM-----EEGRLTRAEIAARTGISKPTVSDSVRRLSEAGLLADTGERTTGRGRVGTY 74 Query: 65 R 65 Sbjct: 75 Y 75 >gi|254512575|ref|ZP_05124641.1| transcriptional regulator, DeoR family [Rhodobacteraceae bacterium KLH11] gi|221532574|gb|EEE35569.1| transcriptional regulator, DeoR family [Rhodobacteraceae bacterium KLH11] Length = 263 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R L+ R +QIA+ +SE + ++++ L +A +VE V GG L R D Sbjct: 13 RELLDVLARLGGSARNTQIAQIMDVSEETVRRLVKTLARANMVERV---HGGTYLSRAQD 69 Query: 72 Q 72 Sbjct: 70 T 70 >gi|315230499|ref|YP_004070935.1| hypothetical protein TERMP_00735 [Thermococcus barophilus MP] gi|315183527|gb|ADT83712.1| hypothetical protein TERMP_00735 [Thermococcus barophilus MP] Length = 276 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+Y + +++ A + + +++ + L K G+V+ +RGR+ Sbjct: 221 ALLYI-LEKGGRASQAEVRNALGLPKTTAWRMFKRLEKQGLVKIIRGRK 268 >gi|168465551|ref|ZP_02699433.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631869|gb|EDX50389.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|168333354|ref|ZP_02691634.1| transcriptional regulator, GntR family, putative [Epulopiscium sp. 'N.t. morphotype B'] Length = 230 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-GGVRLCRPADQIT-ILDV 78 D + E +S + + + L K GIV T +G+ G + D +T +L++ Sbjct: 27 GDKLKPERVLVEEYEVSRSSVREAIGALNKMGIVVTRQGKNRGNYINDKAPDMLTKVLEI 86 Query: 79 VKATEESFFV 88 +++ + Sbjct: 87 YMILDDNLAI 96 >gi|194444886|ref|YP_002039699.1| extracellular solute-binding protein family 5 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403549|gb|ACF63771.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|197251580|ref|YP_002145437.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215283|gb|ACH52680.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|120403917|ref|YP_953746.1| helix-turn-helix, type 11 domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956735|gb|ABM13740.1| Helix-turn-helix, type 11 domain protein [Mycobacterium vanbaalenii PYR-1] Length = 230 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68 + L+ + P +++++ +S+ + + +Q L AG+ + G GG + R Sbjct: 7 LYALVDLLRGSRRPLSAARLSQEFEVSKRTIERDIQSLQLAGVPIYADYGVSGGYSILRE 66 Query: 69 ---PADQITI 75 P +T+ Sbjct: 67 HSLPPLNLTV 76 >gi|315642540|ref|ZP_07897017.1| RepE protein [Enterococcus italicus DSM 15952] gi|315482257|gb|EFU72821.1| RepE protein [Enterococcus italicus DSM 15952] Length = 374 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 + + E+ I + L K+L+ L + + GR GG+ L Sbjct: 270 STKKDLTESLKIPKRSLDKVLKQLKEENKIHFRVRAGRNGGIMLA 314 >gi|315303842|ref|ZP_07874329.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria ivanovii FSL F6-596] gi|313627785|gb|EFR96431.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria ivanovii FSL F6-596] Length = 329 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 QIA++ S ++K ++ L K G +E VR R G RL A+Q T Sbjct: 16 EGAYLSGQQIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68 >gi|284997741|ref|YP_003419508.1| transcriptional regulator TrmB [Sulfolobus islandicus L.D.8.5] gi|284445636|gb|ADB87138.1| transcriptional regulator TrmB [Sulfolobus islandicus L.D.8.5] Length = 655 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 23/38 (60%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 A+ ++ + +IA+A +S+ + +L+ L + G+VE Sbjct: 489 ALPDEGGLKSQEIADALKVSKQYAINVLKNLERKGVVE 526 >gi|239988675|ref|ZP_04709339.1| ArsR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291445662|ref|ZP_06585052.1| ArsR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348609|gb|EFE75513.1| ArsR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 370 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P ++AE+ I+ + + L L KAG+V T R RG L Sbjct: 308 SPYTTGELAESHSITAPEVSRHLSVLKKAGLVTTRR--RGRYVL 349 >gi|261404782|ref|YP_003241023.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281245|gb|ACX63216.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. Y412MC10] Length = 317 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L + + N +AE +SE + + ++ L AGI V RG +GG L Sbjct: 5 RLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVL 61 >gi|187934272|ref|YP_001885773.1| transcriptional regulatory protein [Clostridium botulinum B str. Eklund 17B] gi|187722425|gb|ACD23646.1| transcriptional regulatory protein [Clostridium botulinum B str. Eklund 17B] Length = 244 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S L + L L G+++ +RG+ Sbjct: 33 EGSRLPSEPELAKFIGVSRTTLRQALALLQDDGLIKNIRGKG 74 >gi|168231445|ref|ZP_02656503.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472206|ref|ZP_03078190.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458570|gb|EDX47409.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334083|gb|EDZ20847.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|167037447|ref|YP_001665025.1| MarR family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|297544513|ref|YP_003676815.1| MarR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|320115860|ref|YP_004186019.1| regulatory protein MarR [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856281|gb|ABY94689.1| transcriptional regulator, MarR family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|296842288|gb|ADH60804.1| transcriptional regulator, MarR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|319928951|gb|ADV79636.1| regulatory protein MarR [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 146 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 V++ + + P + IA IS L I+ LV+ G+V+ Sbjct: 44 VIIILSENKSNPMYMKDIALELGISPSTLTSIVDKLVEKGLVQ 86 >gi|111220934|ref|YP_711728.1| hypothetical protein FRAAL1481 [Frankia alni ACN14a] gi|111148466|emb|CAJ60137.1| hypothetical protein FRAAL1481 [Frankia alni ACN14a] Length = 426 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--RLCRP 69 R+L A D + +A A S + ++ + L + G V +G G + RL +P Sbjct: 7 RILDQLAKVPDGLDDGR-LAAAIGASRGTVNQVCRRLAQTGQVRRAQGPGGLILNRLPQP 65 Query: 70 ADQIT--ILDVVKATEESFFVAE 90 A I D V TE + Sbjct: 66 AATIPEIPGDSVPVTEAAVEPVP 88 >gi|111022260|ref|YP_705232.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110821790|gb|ABG97074.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 250 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 +A +S + + LV+AGI+ + GR G + I+I Sbjct: 39 RALAAQMDVSRPTVSSAISKLVEAGILRSRPGRHG------NPEVISIW 81 >gi|120402844|ref|YP_952673.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1] gi|119955662|gb|ABM12667.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii PYR-1] Length = 251 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 15 MYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ + +D P + +A ++ + + + L L + +VET RGR GG + RPA Sbjct: 28 IHLGLLDDGERLPVEV-DLAAQFGVAPMTVREALATLREQELVETRRGRSGGSFVRRPA 85 >gi|16077849|ref|NP_388663.1| GntR family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221308617|ref|ZP_03590464.1| GntR family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221312941|ref|ZP_03594746.1| GntR family transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317866|ref|ZP_03599160.1| GntR family transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221322139|ref|ZP_03603433.1| GntR family transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|321314509|ref|YP_004206796.1| GntR family transcriptional regulator [Bacillus subtilis BSn5] gi|1717743|sp|P39796|TRER_BACSU RecName: Full=Trehalose operon transcriptional repressor gi|1000453|emb|CAA91016.1| TreR [Bacillus subtilis] gi|2626829|dbj|BAA23407.1| TreR [Bacillus subtilis] gi|2633106|emb|CAB12611.1| transcriptional regulator (GntR family) [Bacillus subtilis subsp. subtilis str. 168] gi|291483219|dbj|BAI84294.1| GntR family transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320020783|gb|ADV95769.1| transcriptional regulator (GntR family) protein [Bacillus subtilis BSn5] Length = 238 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ S + K L L + G ++ +RG+ G V L R Sbjct: 33 ELTAQYGTSRETVRKALHMLAQNGYIQKIRGK-GSVVLNRE 72 >gi|312960257|ref|ZP_07774768.1| transcriptional regulator, GntR family [Pseudomonas fluorescens WH6] gi|311285479|gb|EFQ64049.1| transcriptional regulator, GntR family [Pseudomonas fluorescens WH6] Length = 259 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRL 66 A P +AE +S + + + L +G+VET G G R+ Sbjct: 33 ELARGTKMPTESQVMAE-HGVSRTVVREAISRLQASGLVETRHGVGTFVKDIPSPSGFRI 91 Query: 67 CRPADQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 D I T+ DV+ E + + + C L V+R +L+A Sbjct: 92 --DPDTIVTLQDVLAVLELRISLE--VEAAGLACLGRTDEQLR-VMRDSLDAL 139 >gi|307719144|ref|YP_003874676.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306532869|gb|ADN02403.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 320 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M + R+L Y H +S++AE + +L + K G+ Sbjct: 178 MRY--FSRVA-RILKYLDTHYMDRISLSELAEREGVHPSYLSRFFHE--KVGL 225 >gi|299536823|ref|ZP_07050130.1| MarR family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298727647|gb|EFI68215.1| MarR family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 139 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 23/42 (54%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +++ P+ IA I + + K++ LV+ G VET+ G+ Sbjct: 42 LNDKGPHSFVDIANFMSIEKPSVTKLVHKLVELGYVETMTGK 83 >gi|297530180|ref|YP_003671455.1| GntR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297253432|gb|ADI26878.1| transcriptional regulator, GntR family [Geobacillus sp. C56-T3] Length = 135 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 21/49 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +D + +A+ I+ + K + L + G + ++ G+ Sbjct: 24 IVRELWQPHDQLPSVRTMAKQLTINPNTIQKAYRELERDGWIYSIPGKG 72 >gi|288961372|ref|YP_003451711.1| transcriptional regulator [Azospirillum sp. B510] gi|288913680|dbj|BAI75167.1| transcriptional regulator [Azospirillum sp. B510] Length = 255 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 11 IRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R L+ A + P ++AEA +S + + K L+ L+ G++ +G Sbjct: 34 LRTLIVEGRLAEQDALPGE-RELAEAFGVSRVTVRKALRELIAEGLLHQRQGAG 86 >gi|282866344|ref|ZP_06275389.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE] gi|282558740|gb|EFB64297.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE] Length = 365 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P ++A++ I+ + + L L KAG++ T R RG L Sbjct: 303 SPYTTGELADSHGITAPEVSRHLSVLKKAGLITTRR--RGRYVL 344 >gi|258650303|ref|YP_003199459.1| MarR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553528|gb|ACV76470.1| transcriptional regulator, MarR family [Nakamurella multipartita DSM 44233] Length = 201 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 IR L+ + + P I +IA + +S + + LV+AG+VE Sbjct: 63 IRTLLTLTQNPE-PVPIHEIATSLELSVATAGRNVDQLVRAGLVE 106 >gi|302546051|ref|ZP_07298393.1| putative transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463669|gb|EFL26762.1| putative transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 329 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + +++A +SE + + L +AG+ V RGR GG RL Sbjct: 9 MVLLLQARPSMTGAELARELEVSERTVTRDAAALSEAGVPVYADRGRAGGYRL 61 >gi|256392517|ref|YP_003114081.1| GntR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358743|gb|ACU72240.1| transcriptional regulator, GntR family [Catenulispora acidiphila DSM 44928] Length = 253 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 12 RVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59 + A +A +S + + L L + G+V + RG Sbjct: 16 HAITEHAYGPGGKLPSEGALAGQYEVSRGTIRQALMLLRQDGLVTSRRG 64 >gi|224582294|ref|YP_002636092.1| solute-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466821|gb|ACN44651.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|200390286|ref|ZP_03216897.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602731|gb|EDZ01277.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|149186320|ref|ZP_01864633.1| transcriptional regulator, ArsR family protein [Erythrobacter sp. SD-21] gi|148829909|gb|EDL48347.1| transcriptional regulator, ArsR family protein [Erythrobacter sp. SD-21] Length = 105 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM + + ++++ +S+ L + L L + G+V+T R Sbjct: 24 LMILCQLSQGEMTVGEMSKHVSLSQSALSQHLSLLRREGLVKTRR 68 >gi|146302056|ref|YP_001196647.1| MarR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156474|gb|ABQ07328.1| transcriptional regulator, MarR family [Flavobacterium johnsoniae UW101] Length = 345 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + I++IA S+ + KI+Q + AGIV+ Sbjct: 81 EERELTITEIANEIGHSQPSVSKIIQEMSNAGIVK 115 >gi|91778226|ref|YP_553434.1| IclR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690886|gb|ABE34084.1| transcriptional regulator, IclR family [Burkholderia xenovorans LB400] Length = 249 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 G+ +L A + P I +AE +++ + LQ L AG Sbjct: 8 GLMLLEALADQSGRPVTIQLLAERVGLTKSNTHRTLQTLAHAGY 51 >gi|62179068|ref|YP_215485.1| putative ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126701|gb|AAX64404.1| putative ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713529|gb|EFZ05100.1| putative ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 571 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 29 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 70 >gi|72161253|ref|YP_288910.1| regulatory proteins, IclR [Thermobifida fusca YX] gi|71914985|gb|AAZ54887.1| regulatory proteins, IclR [Thermobifida fusca YX] Length = 276 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ +S++A++ + + +I++ LV G V + RR L Sbjct: 40 CLLEIMAEAGGETSLSELAQSSGLPLPTIHRIVRSLVSNGYVRQLPSRR--YALG--PRL 95 Query: 73 ITILD 77 I + + Sbjct: 96 IGLGE 100 >gi|54024599|ref|YP_118841.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016107|dbj|BAD57477.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 111 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R+++ YP S++AE +S L L L G+V V GRR L Sbjct: 26 RIMVRLRQQPGYP---SELAEQLGVSRQILSNHLACLRGCGLVVAVPEGRRVRYELADAR 82 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99 + D++ + A C AS + C Sbjct: 83 VGAALGDLLGLV-LAVDPACCPASDERGC 110 >gi|42522964|ref|NP_968344.1| MarR family transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39574160|emb|CAE79337.1| transcriptional regulator, MarR family [Bdellovibrio bacteriovorus HD100] Length = 327 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVRLCRPADQIT 74 + N+ N ++ IAEA S + KIL + KAG+V ++ RR + L + ++ Sbjct: 61 LSNEEQNTVTSIAEAIGHSHASVSKILTEMSKAGLVLEKTDSQDRRRTKITLSKKGKDLS 120 Query: 75 ------ILDVVKATE 83 DV +A E Sbjct: 121 EKIERQYADVNEAIE 135 >gi|103485544|ref|YP_615105.1| MarR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975621|gb|ABF51772.1| transcriptional regulator, MarR family [Sphingopyxis alaskensis RB2256] Length = 187 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R L + A IS + I++ L ++++ L G+V T G R R A Sbjct: 73 RALYFIARQPG--LTISDLLALLGITKQSLGRVVKELEARGLVATRPGNR-----DRRAK 125 Query: 72 QITILDVVKATEESFF 87 ++ + D +A E F Sbjct: 126 ELRLTDAGRAAERELF 141 >gi|313619986|gb|EFR91525.1| transcriptional regulator [Listeria innocua FSL S4-378] Length = 125 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 D + ++A ++ + + L +AGI+ TVRG G L +I Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGT--GKYLTEDKRRI 79 >gi|238911413|ref|ZP_04655250.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|229166296|ref|ZP_04294055.1| Transcriptional regulator, GntR [Bacillus cereus AH621] gi|228617241|gb|EEK74307.1| Transcriptional regulator, GntR [Bacillus cereus AH621] Length = 126 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|168237571|ref|ZP_02662629.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738291|ref|YP_002113487.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713793|gb|ACF93014.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289550|gb|EDY28913.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 566 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|55379029|ref|YP_136879.1| transcription regulator [Haloarcula marismortui ATCC 43049] gi|55231754|gb|AAV47173.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 350 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 21/76 (27%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--------TVRGRRGGVRL 66 Y +I + S+IA+ +S+ +++ I + L G VE T+R Sbjct: 22 TYLSILSSGEATASEIADDTGVSKRYVYSISESLEDRGFVEVNDHVVPTTIR-------- 73 Query: 67 CRPADQITILDVVKAT 82 RP ++ V+ A Sbjct: 74 ARPPEE-----VIDAL 84 >gi|329926151|ref|ZP_08280742.1| HTH domain protein [Paenibacillus sp. HGF5] gi|328939425|gb|EGG35779.1| HTH domain protein [Paenibacillus sp. HGF5] Length = 317 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L + + N +AE +SE + + ++ L AGI V RG +GG L Sbjct: 5 RLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVL 61 >gi|331699924|ref|YP_004336163.1| GntR domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954613|gb|AEA28310.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190] Length = 252 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPADQITILDVVKATEESF 86 ++++ + +S + + L+ L +VET RG +GG + VV A ES Sbjct: 47 AELSRSFEVSRSTVREALRSLASQHLVETRRGVQGGSFVSAPDPAR-----VVAAVGESL 101 Query: 87 FV 88 V Sbjct: 102 GV 103 >gi|325919773|ref|ZP_08181769.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas gardneri ATCC 19865] gi|325549759|gb|EGD20617.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Xanthomonas gardneri ATCC 19865] Length = 258 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L K G V G +G Sbjct: 14 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 67 Query: 63 -GVRL 66 G L Sbjct: 68 RGYVL 72 >gi|91779398|ref|YP_554606.1| IclR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692058|gb|ABE35256.1| transcriptional regulator, IclR family [Burkholderia xenovorans LB400] Length = 293 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGV 64 +R L P +SQ++ I + L ++++ L G V RG G+ Sbjct: 34 ALRALAVLEQLAAAGQPFSLSQLSLRLRIPKATLMRLIESLEAQGYVTHLPDSRGTDRGI 93 Query: 65 RLCRPADQITI 75 L A Q+ + Sbjct: 94 TLGPKAAQLAL 104 >gi|291434965|ref|ZP_06574355.1| ROK-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291337860|gb|EFE64816.1| ROK-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 385 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGGV 64 +R LM + ++IA IS+ + ++ L +AG++ T RGR G Sbjct: 26 LRALM-----EEGRLTRAEIAARTGISKPTVSDSVRRLSEAGLLADTGERTTGRGRVGTY 80 Query: 65 R 65 Sbjct: 81 Y 81 >gi|282862958|ref|ZP_06272018.1| putative transcriptional regulator, ArsR family [Streptomyces sp. ACTE] gi|282561940|gb|EFB67482.1| putative transcriptional regulator, ArsR family [Streptomyces sp. ACTE] Length = 321 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L + P +++A +S + + L L AG+V R Sbjct: 260 RLLAEL----ETPASTTELARRTGLSRAGVSQCLTALRDAGLVSAHR 302 >gi|297570047|ref|YP_003691391.1| transcriptional regulator, ArsR family [Desulfurivibrio alkaliphilus AHT2] gi|296925962|gb|ADH86772.1| transcriptional regulator, ArsR family [Desulfurivibrio alkaliphilus AHT2] Length = 136 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +R++ H + + ++A AC + + + L+ L G +E+ R GR+ + P Sbjct: 56 LRIVQILLDHEE---SVGELARACELPSHMVSEHLRLLKDRGFLESRRDGRKVFYSIAEP 112 Query: 70 ADQITILDVVKATEESF 86 A + ++ EE F Sbjct: 113 A----LASIMHCIEERF 125 >gi|256965551|ref|ZP_05569722.1| replication protein E [Enterococcus faecalis HIP11704] gi|305678688|ref|YP_003864107.1| RepE [Enterococcus faecalis] gi|256956047|gb|EEU72679.1| replication protein E [Enterococcus faecalis HIP11704] gi|304324942|gb|ADM24822.1| RepE [Enterococcus faecalis] gi|304324982|gb|ADM24861.1| RepE [Enterococcus faecalis] gi|304325023|gb|ADM24901.1| RepE [Enterococcus faecalis] Length = 496 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D +I EA I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALSIPERTLDKLLKVLKANQEIFFKVKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|237749618|ref|ZP_04580098.1| hypothetical protein HRAG_02234 [Helicobacter bilis ATCC 43879] gi|229374786|gb|EEO25177.1| hypothetical protein HRAG_02234 [Helicobacter bilis ATCC 43879] Length = 184 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58 I++IAE I+ L+KIL LVK + V++ R Sbjct: 41 ISITKIAEHLNIARGHLYKILGKLVKRELIVKSCR 75 >gi|227833694|ref|YP_002835401.1| transcriptional regulator, arsR family [Corynebacterium aurimucosum ATCC 700975] gi|262184700|ref|ZP_06044121.1| transcriptional regulator, arsR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227454710|gb|ACP33463.1| transcriptional regulator, arsR family [Corynebacterium aurimucosum ATCC 700975] Length = 116 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGR 60 +R+L P ++++ E +S+ + L L +AG++ RGR Sbjct: 45 LRLLSILCDEGCGPMSVTELTELTALSQPTVSHHLARLREAGLLSRQQRGR 95 >gi|261367637|ref|ZP_05980520.1| transcriptional regulator, DeoR family [Subdoligranulum variabile DSM 15176] gi|282570427|gb|EFB75962.1| transcriptional regulator, DeoR family [Subdoligranulum variabile DSM 15176] Length = 303 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 ++AE +S + + ++ L +AGI + T +G GG+ Sbjct: 17 EQVTAPELAEQFEVSRRTIQRDIEALGRAGIPITTAQGAGGGI 59 >gi|188588841|ref|YP_001920916.1| transcriptional regulator, GntR family [Clostridium botulinum E3 str. Alaska E43] gi|188499122|gb|ACD52258.1| transcriptional regulator, GntR family [Clostridium botulinum E3 str. Alaska E43] Length = 132 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +++ I+ + K + L + GI+ET+RG+ Sbjct: 31 EGEKLPSVRELSSILTINPNTISKAYRELEREGIIETLRGKG 72 >gi|182436331|ref|YP_001824050.1| GntR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464847|dbj|BAG19367.1| putative GntR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|327187178|dbj|BAK08921.1| putative GntR family transcriptional regulator [Streptomyces griseus] Length = 134 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L ++ + +R + D + +A+ ++ + K + L G+V G Sbjct: 21 QLVQQVRHALR--LGLLKEGDRLPTVKDVAKQMAVNPNTVLKAYRELEHDGLVAARPGVG 78 >gi|126466185|ref|YP_001041294.1| regulatory protein, ArsR [Staphylothermus marinus F1] gi|126015008|gb|ABN70386.1| regulatory protein, ArsR [Staphylothermus marinus F1] Length = 114 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Query: 3 LTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRG 59 L+ +T R +L + + +N I +++E + + K ++ L AG+V + G Sbjct: 41 LSSKTR---RLILYHLSRNNG--LSIKELSEITRLPVSVISKHVKKLEDAGLVISGLKNG 95 Query: 60 RRG 62 RG Sbjct: 96 NRG 98 >gi|16759436|ref|NP_455053.1| solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142792|ref|NP_806134.1| solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213645997|ref|ZP_03376050.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850130|ref|ZP_03381028.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829267|ref|ZP_06546879.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511975|pir||AC0559 probable solute-binding protein STY0498 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501727|emb|CAD08915.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138424|gb|AAO69994.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|320100459|ref|YP_004176051.1| putative AsnC family transcriptional regulator [Desulfurococcus mucosus DSM 2162] gi|319752811|gb|ADV64569.1| putative transcriptional regulator, AsnC family [Desulfurococcus mucosus DSM 2162] Length = 144 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRP 69 L Y H+ SQ+++ + + +IL L KAG+VE T GR+ L +P Sbjct: 14 LKYLLKHSGQEIYQSQLSKELGVDPKVVSRILIKLEKAGVVERTPVTYEGRK--TFLVKP 71 Query: 70 ADQITILDVVKATEES 85 +VKA E+S Sbjct: 72 VRD----KLVKAMEDS 83 >gi|239943015|ref|ZP_04694952.1| ArsR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989473|ref|ZP_04710137.1| ArsR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446487|ref|ZP_06585877.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349434|gb|EFE76338.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 331 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R L CA+ + P ++A +S K L A ++ + R RGG Sbjct: 258 RALALCALSS--PCSTGELARRIGVSIGTASKHASVLRTAKLITSTR--RGG 305 >gi|229160406|ref|ZP_04288404.1| Transcriptional regulator, GntR [Bacillus cereus R309803] gi|228623130|gb|EEK79958.1| Transcriptional regulator, GntR [Bacillus cereus R309803] Length = 126 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|225026799|ref|ZP_03715991.1| hypothetical protein EUBHAL_01051 [Eubacterium hallii DSM 3353] gi|224955918|gb|EEG37127.1| hypothetical protein EUBHAL_01051 [Eubacterium hallii DSM 3353] Length = 123 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 15/40 (37%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L + +V + R Sbjct: 29 QPGDKLPSVRDLAAQAGVNPNTMQKALSELERENLVHSAR 68 >gi|242279976|ref|YP_002992105.1| ribonuclease BN [Desulfovibrio salexigens DSM 2638] gi|242122870|gb|ACS80566.1| ribonuclease BN [Desulfovibrio salexigens DSM 2638] Length = 456 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M K + + ++ ++++P + ++A + F+ +L V++GI+ ++G Sbjct: 316 MQ--KFSLLALSLMTMRFENSEHPYDLEELAGEIGVPVRFISPLLDRFVESGIL--IKGS 371 Query: 61 RGG---VRLCRPADQITILDVVKATEES 85 G +T+L V+ S Sbjct: 372 EEGNELYSFAVSPRNLTMLQVMGILSGS 399 >gi|118467461|ref|YP_890908.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118168748|gb|ABK69644.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 245 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 15 MYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ + +D P + +A ++ + + + L L + +VET RGR GG + RPA Sbjct: 27 IHLGLLDDGERLPVEV-DLAAQFGVAPMTVREALATLRELELVETRRGRSGGSFVRRPA 84 >gi|69244976|ref|ZP_00603166.1| conserved hypothetical protein [Enterococcus faecium DO] gi|115534849|ref|YP_783931.1| hypothetical protein pRE25p47 [Enterococcus faecalis] gi|255976308|ref|ZP_05426894.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|257080190|ref|ZP_05574551.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257090926|ref|ZP_05585287.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|296449278|ref|ZP_06891063.1| DeoR family transcriptional regulator [Clostridium difficile NAP08] gi|307283571|ref|ZP_07563754.1| HTH domain protein [Enterococcus faecalis TX0860] gi|312903593|ref|ZP_07762772.1| HTH domain protein [Enterococcus faecalis TX0635] gi|12957032|emb|CAC29202.1| hypothetical protein [Enterococcus faecalis] gi|68196142|gb|EAN10573.1| conserved hypothetical protein [Enterococcus faecium DO] gi|133919250|emb|CAL69041.1| hypothetical protein [Streptococcus pneumoniae] gi|138752659|emb|CAM32750.1| hypothetical protein [Streptococcus pneumoniae] gi|255969180|gb|EET99802.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256988220|gb|EEU75522.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256999738|gb|EEU86258.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|296261877|gb|EFH08687.1| DeoR family transcriptional regulator [Clostridium difficile NAP08] gi|306503595|gb|EFM72836.1| HTH domain protein [Enterococcus faecalis TX0860] gi|310633043|gb|EFQ16326.1| HTH domain protein [Enterococcus faecalis TX0635] gi|315162838|gb|EFU06855.1| HTH domain protein [Enterococcus faecalis TX0645] gi|319757838|gb|ADV69780.1| hypothetical protein SSUJS14_0691 [Streptococcus suis JS14] gi|323464891|gb|ADX77044.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 190 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68 +L+ + +IA+ IS +++ ++ L +AGI + + G+ G L Sbjct: 10 ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65 Query: 69 -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124 P T +V A + C + + S+L+ + L Sbjct: 66 LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122 >gi|326626801|gb|EGE33144.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|324325471|gb|ADY20731.1| GntR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 126 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|300933887|ref|ZP_07149143.1| ArsR family transcriptional regulator [Corynebacterium resistens DSM 45100] Length = 110 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +++L + A P ++++ E +S+ + L L +AG++E R Sbjct: 39 LQLLSHIADTGCDPLTVNELTERTGLSQSTVSHHLGKLTEAGLLEKKR 86 >gi|297617464|ref|YP_003702623.1| biotin/acetyl-CoA-carboxylase ligase [Syntrophothermus lipocalidus DSM 12680] gi|297145301|gb|ADI02058.1| biotin/acetyl-CoA-carboxylase ligase [Syntrophothermus lipocalidus DSM 12680] Length = 349 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L + +++A IS ++K + L K G + + G RL Sbjct: 33 RILSKLQQNQGEWVSGAELARELGISRTAVWKHIDSLRKEGYRITAI--PNQGYRL 86 >gi|284045497|ref|YP_003395837.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949718|gb|ADB52462.1| transcriptional regulator, GntR family [Conexibacter woesei DSM 14684] Length = 231 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 21/118 (17%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRP 69 R ++ I + ++EA IS + + L L KAG+V E RG R V L R Sbjct: 29 RAILEGRIPPGQLTSVRALSEALGISRTPVREALVELAKAGMVAFERNRGVRVVVTLGRD 88 Query: 70 ADQI---TI-LDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 ++I + L+V A E V C + L + L+ L Sbjct: 89 VEEIFQLRLWLEVPAALE---AVPRCGGAE------------LEALARTLDGMRAHLD 131 >gi|291294735|ref|YP_003506133.1| Helix-turn-helix type 11 domain-containing protein [Meiothermus ruber DSM 1279] gi|290469694|gb|ADD27113.1| Helix-turn-helix type 11 domain protein [Meiothermus ruber DSM 1279] Length = 321 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + +++A+ +S + + ++ L +G+ V RG +GG RL Sbjct: 9 ILLLLQTRGRATTAELAKRLEVSPRTIHRDMEALTASGVPVYAERGSKGGWRL 61 >gi|239820213|ref|YP_002947398.1| regulatory protein GntR HTH [Variovorax paradoxus S110] gi|239805066|gb|ACS22132.1| regulatory protein GntR HTH [Variovorax paradoxus S110] Length = 237 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 S++A +S + + L L GI+E+ RG Sbjct: 40 SELASQFGVSRPTVREALSRLRSDGIIESRRGSG 73 >gi|197264601|ref|ZP_03164675.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242856|gb|EDY25476.1| extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|166031104|ref|ZP_02233933.1| hypothetical protein DORFOR_00789 [Dorea formicigenerans ATCC 27755] gi|166028951|gb|EDR47708.1| hypothetical protein DORFOR_00789 [Dorea formicigenerans ATCC 27755] Length = 122 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + ++A ++ + K L L + G+V + R Sbjct: 31 GDKLPSVRELAMEASVNPNTMQKALSELERIGLVHSRR 68 >gi|163731628|ref|ZP_02139075.1| phosphonates metabolism transcriptional regulator PhnF, putative [Roseobacter litoralis Och 149] gi|161395082|gb|EDQ19404.1| phosphonates metabolism transcriptional regulator PhnF, putative [Roseobacter litoralis Och 149] Length = 239 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D + +AE ++ + + LV+ G+V T RG G + I V+ Sbjct: 30 GDKLPTEAALAERFGVNRHTVRHGISALVEEGLVRTRRGA--GAFVAATPTDYPIGKRVR 87 >gi|161615348|ref|YP_001589313.1| hypothetical protein SPAB_03119 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364712|gb|ABX68480.1| hypothetical protein SPAB_03119 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|134045436|ref|YP_001096922.1| phosphate uptake regulator PhoU [Methanococcus maripaludis C5] gi|132663061|gb|ABO34707.1| phosphate uptake regulator, PhoU [Methanococcus maripaludis C5] Length = 284 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52 ++ P IA+ +S ++ K+L+PLV G Sbjct: 18 DEEPETQDDIADRLNVSRRYVAKLLKPLVDGG 49 >gi|118470828|ref|YP_889837.1| ArsR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118172115|gb|ABK73011.1| transcriptional regulator, ArsR family protein [Mycobacterium smegmatis str. MC2 155] Length = 112 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 18/96 (18%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R+L+ N+ PN + +AE +S L L L G+V V GRR L Sbjct: 24 RILLSL---NESPNYPADLAEQLGVSRQTLSNHLACLRGCGLVVAVPEGRRTRYELA--- 77 Query: 71 DQITILDVVKATEESFFVA-------ECFASHKIDC 99 I +A ++ + C C Sbjct: 78 -DARIG---RALDDLMGLVLDVDPECRCVGPDGAVC 109 >gi|56414388|ref|YP_151463.1| solute-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168818931|ref|ZP_02830931.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|56128645|gb|AAV78151.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|205344196|gb|EDZ30960.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084730|emb|CBY94521.1| HTH-type transcriptional regulator sgrR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|134300310|ref|YP_001113806.1| signal-transduction protein [Desulfotomaculum reducens MI-1] gi|134053010|gb|ABO50981.1| putative signal-transduction protein with CBS domains [Desulfotomaculum reducens MI-1] Length = 211 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--- 57 M L+KR + ++ + ND P QIAE ++ L L L AG +E Sbjct: 1 MELSKRQE----TIIEI-VKNDGPITGEQIAERLNLTRATLRPDLSILTMAGFLEARPRV 55 Query: 58 ----RGRRGGVRLCRPADQITILDV 78 G+ L ++ + +V Sbjct: 56 GYYYNGKTADRILAEKITRLQVGEV 80 >gi|326382376|ref|ZP_08204068.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199106|gb|EGD56288.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 111 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IR++ S +A A +S L L AG+V + R Sbjct: 39 IRMMSLLMTDPTREMTASDLACAVGVSGGTATHHLNQLRGAGLVTSQR 86 >gi|322372839|ref|ZP_08047375.1| biotin-[acetyl-CoA-carboxylase] ligase [Streptococcus sp. C150] gi|321277881|gb|EFX54950.1| biotin-[acetyl-CoA-carboxylase] ligase [Streptococcus sp. C150] Length = 312 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP----AD 71 A D+ +A+ IS ++K +Q L GIV +VR + G RL + Sbjct: 11 LAKSPDF-VTGENLAKELGISRTAIWKAIQTLQNQGIVITSVRKK--GYRLEKGDILLPQ 67 Query: 72 QIT 74 I+ Sbjct: 68 DIS 70 >gi|319937721|ref|ZP_08012124.1| hypothetical protein HMPREF9488_02960 [Coprobacillus sp. 29_1] gi|319807156|gb|EFW03770.1| hypothetical protein HMPREF9488_02960 [Coprobacillus sp. 29_1] Length = 155 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 L+ ++ D ++Q+AE S + +I+ L + G + TV Sbjct: 46 LICLSLFQDEEPTVNQLAEVMGSSHQNVKQIINKLEEKGFLITV 89 >gi|294813228|ref|ZP_06771871.1| Putative ArsR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441662|ref|ZP_08216396.1| ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294325827|gb|EFG07470.1| Putative ArsR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 378 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 S++AE+ I+ + + L L +AG+V T R RG L Sbjct: 319 TTSELAESYGITAPEVSRHLGVLKRAGLVSTRR--RGRYVL 357 >gi|229149655|ref|ZP_04277885.1| Transcriptional regulator, GntR [Bacillus cereus m1550] gi|228633686|gb|EEK90285.1| Transcriptional regulator, GntR [Bacillus cereus m1550] Length = 126 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|168261106|ref|ZP_02683079.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|204930608|ref|ZP_03221538.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320542|gb|EDZ05745.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205349706|gb|EDZ36337.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|150021085|ref|YP_001306439.1| helix-turn-helix, type 11 domain-containing protein [Thermosipho melanesiensis BI429] gi|149793606|gb|ABR31054.1| Helix-turn-helix, type 11 domain protein [Thermosipho melanesiensis BI429] Length = 61 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 P R S IA+ + + K++ L K G VE+ Sbjct: 15 EGKPMRTSDIAKKLGVDTKVVSKLISELKKEGKVES 50 >gi|315644108|ref|ZP_07897278.1| transcriptional regulator, TrmB [Paenibacillus vortex V453] gi|315280483|gb|EFU43772.1| transcriptional regulator, TrmB [Paenibacillus vortex V453] Length = 125 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Query: 1 MHLTKRTDYG----IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT T R+ + + P + IAE I + K L+ L++AG+VE Sbjct: 17 MELTTFTALAEPSRFRI-VDLLLRG--PMTVGDIAERLEIRQPQASKHLKVLLEAGLVE 72 >gi|257792117|ref|YP_003182723.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|325832574|ref|ZP_08165402.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] gi|257476014|gb|ACV56334.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|325485979|gb|EGC88438.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] Length = 131 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---CRPADQI-TIL 76 D + +A ++ + K+ L + G +++ R R+G L +P I + Sbjct: 34 GDQLPTVRGLAADVEVNYNTVSKVYMSLEQDGYIQSKR-RQGAFVLDVSDKPGVSISSTA 92 Query: 77 DVVKATEESFFVAECFA 93 ++V S ++ CF Sbjct: 93 EIVT----SEYLKRCFE 105 >gi|205351766|ref|YP_002225567.1| solute-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271547|emb|CAR36366.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|182437732|ref|YP_001825451.1| GntR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466248|dbj|BAG20768.1| putative GntR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 143 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R L D ++ EA I+ + K + L + G+VE RG Sbjct: 27 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 82 >gi|16763837|ref|NP_459452.1| ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990441|ref|ZP_02571541.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168240286|ref|ZP_02665218.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451751|ref|YP_002044491.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|16418963|gb|AAL19411.1| putative ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194410055|gb|ACF70274.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205331038|gb|EDZ17802.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339787|gb|EDZ26551.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261245739|emb|CBG23536.1| Putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992173|gb|ACY87058.1| putative ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157067|emb|CBW16551.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911489|dbj|BAJ35463.1| ABC transporter substrate binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226034|gb|EFX51085.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128776|gb|ADX16206.1| putative ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987405|gb|AEF06388.1| putative ABC transporter periplasmic binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 566 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|152974881|ref|YP_001374398.1| regulatory protein GntR HTH [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023633|gb|ABS21403.1| regulatory protein GntR HTH [Bacillus cytotoxicus NVH 391-98] Length = 126 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + + Q L + GIV T RG Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELEREGIVITRRGMG 71 >gi|326407649|gb|ADZ64720.1| zinc transport transcription regulator [Lactococcus lactis subsp. lactis CV56] Length = 145 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM A + + ++IAE IS + K L+ L + ++++ R Sbjct: 41 HILMLLA---EQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSGR 84 >gi|288916838|ref|ZP_06411211.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] gi|288351723|gb|EFC85927.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f] Length = 324 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE ++ + + + L G VE+ G RGG RL Sbjct: 24 AELAERLGVTTRTVRRDVDRLRDLGYPVESATGTRGGYRLG 64 >gi|229010759|ref|ZP_04167956.1| Transcriptional regulator, GntR [Bacillus mycoides DSM 2048] gi|229132260|ref|ZP_04261116.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST196] gi|228651198|gb|EEL07177.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST196] gi|228750433|gb|EEM00262.1| Transcriptional regulator, GntR [Bacillus mycoides DSM 2048] Length = 126 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|148256858|ref|YP_001241443.1| ArsR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409031|gb|ABQ37537.1| transcriptional regulator, ArsR family [Bradyrhizobium sp. BTAi1] Length = 111 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ + ++A + + L L L +AG+V + R Sbjct: 12 AFRLLV---QNEPQGLPAGELARLLEVPQNTLSAHLAVLARAGLVRSQR 57 >gi|119873454|ref|YP_931461.1| ATP-NAD/AcoX kinase [Pyrobaculum islandicum DSM 4184] gi|119674862|gb|ABL89118.1| ATP-NAD/AcoX kinase [Pyrobaculum islandicum DSM 4184] Length = 293 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 I P S+IA +S + L+ L KAG+V+++ Sbjct: 242 IEERGPLAASEIAALSGLSPRTVRYALERLRKAGLVKSI 280 >gi|110668106|ref|YP_657917.1| hypothetical protein HQ2167A [Haloquadratum walsbyi DSM 16790] gi|109625853|emb|CAJ52293.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790] Length = 307 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R L A+H + +S +A S + ++++ L AG+VET R Sbjct: 7 VRALT--ALHGEQ--TVSDLATNLDRSLSYTSELVERLETAGLVETRR 50 >gi|86135961|ref|ZP_01054540.1| transcriptional regulator, GntR family protein [Roseobacter sp. MED193] gi|85826835|gb|EAQ47031.1| transcriptional regulator, GntR family protein [Roseobacter sp. MED193] Length = 249 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D +Q+A ++ + + L + + G+V RG GV + I V+ Sbjct: 37 GDKLPSEAQLAARFGVNRHTVRRALADMAEQGLVHARRGS--GVFVAATPTDYPIGKRVR 94 >gi|331086550|ref|ZP_08335628.1| hypothetical protein HMPREF0987_01931 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410383|gb|EGG89815.1| hypothetical protein HMPREF0987_01931 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 327 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + ++ E +S ++K++ L + G +E VR + G RL D Sbjct: 10 RESSGHVSGQELCERFQVSRTAIWKVISQLKEEGYEIEAVRNK--GYRLQESPD 61 >gi|323214493|gb|EFZ99244.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] Length = 567 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|306833719|ref|ZP_07466846.1| MarR family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424489|gb|EFM27628.1| MarR family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 146 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 ++Y + D I I + IS+ +++ + K G ++ + Sbjct: 40 AVLYLHDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGFIQII 84 >gi|295695053|ref|YP_003588291.1| transcriptional regulator, GntR family [Bacillus tusciae DSM 2912] gi|295410655|gb|ADG05147.1| transcriptional regulator, GntR family [Bacillus tusciae DSM 2912] Length = 131 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++A ++ + K Q L + G++ET+RGR Sbjct: 33 GTRLPSVRELAVQLALNHNTVAKAYQELEREGLIETLRGRG 73 >gi|260907298|ref|ZP_05915620.1| ArsR family transcriptional regulator [Brevibacterium linens BL2] Length = 117 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 6/57 (10%) Query: 8 DYGIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D +R L +P + IAE +S+ L L +AG+ VR Sbjct: 10 DLSLRALADSNRRSILHAIRGHPLPVGSIAEVVGLSQQTTSHHLGVLRRAGLTVGVR 66 >gi|170782671|ref|YP_001711005.1| putative transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157241|emb|CAQ02425.1| putative transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 235 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 5 KRTD--YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 RTD Y + + P Q+AE +S + + L L +AG+ + GR Sbjct: 2 TRTDRLYAL--VEELRRVAPRPRSARQLAERFEVSSRTIERDLSALQQAGVPIWAEPGRT 59 Query: 62 GGV 64 GG Sbjct: 60 GGY 62 >gi|145295747|ref|YP_001138568.1| hypothetical protein cgR_1673 [Corynebacterium glutamicum R] gi|140845667|dbj|BAF54666.1| hypothetical protein [Corynebacterium glutamicum R] Length = 101 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L+ H +S++A+ ++ LQ L G+VE+ + Sbjct: 27 LRLLIALHYHGPGEATVSELADIVGVTLPTASAALQLLADNGVVESFK 74 >gi|262202998|ref|YP_003274206.1| DeoR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262086345|gb|ACY22313.1| Helix-turn-helix type 11 domain protein [Gordonia bronchialis DSM 43247] Length = 324 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 ++A+ I+ + + + L + G V+ G GG RL A+ Sbjct: 25 ELADRLNITTRTVRRDVDKLRELGYPVDATVGVGGGYRLGAGAE 68 >gi|260433813|ref|ZP_05787784.1| transcriptional regulator, GntR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417641|gb|EEX10900.1| transcriptional regulator, GntR family [Silicibacter lacuscaerulensis ITI-1157] Length = 243 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74 ++ S++A+ +S + + L+ L ++ T RG GG + R + QIT Sbjct: 31 DERLPSESELADQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLSFQDAYSQQIT 90 Query: 75 ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119 ++ + E F C A + ++ C PL L F Sbjct: 91 TSTLLLSMNEVSFDTACEARYALERACAPLSAQRRTADQLATMRAEIF 138 >gi|302873483|ref|YP_003842116.1| transcriptional regulator, GntR family [Clostridium cellulovorans 743B] gi|307688338|ref|ZP_07630784.1| transcriptional regulator, GntR family protein [Clostridium cellulovorans 743B] gi|302576340|gb|ADL50352.1| transcriptional regulator, GntR family [Clostridium cellulovorans 743B] Length = 124 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 D + ++AE ++ + + Q L + I+ T RG G + + + +I Sbjct: 30 EGDKLLSVREMAEKYSVNPNTIQRAYQELERNNIIYTQRGM--GTFITKDSSKI 81 >gi|213586411|ref|ZP_03368237.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 566 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|108802062|ref|YP_642259.1| hypothetical protein Mmcs_5099 [Mycobacterium sp. MCS] gi|119871214|ref|YP_941166.1| hypothetical protein Mkms_5187 [Mycobacterium sp. KMS] gi|126438041|ref|YP_001073732.1| hypothetical protein Mjls_5478 [Mycobacterium sp. JLS] gi|108772481|gb|ABG11203.1| hypothetical protein Mmcs_5099 [Mycobacterium sp. MCS] gi|119697303|gb|ABL94376.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126237841|gb|ABO01242.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length = 119 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 14/88 (15%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRR 61 LT T VL+ A +++ I+E + IL LV G + ++ GRR Sbjct: 37 LTNHT----HVLLCLA--QSGSLTARELSLRIGITERSVQAILADLVADGYLTKSKVGRR 90 Query: 62 GGV------RLCRPADQI-TILDVVKAT 82 RL P + T+ +++ A Sbjct: 91 NSYTINPKGRLRHPLESAHTVGELIAAL 118 >gi|91780404|ref|YP_555611.1| IclR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693064|gb|ABE36261.1| transcriptional regulator, IclR family [Burkholderia xenovorans LB400] Length = 265 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 10 GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R ++ + A H ++I++A I + L +L L + G +E Sbjct: 5 ALRVLEIMEFVATHKAGCATHTEISQALGIPKSSLTALLTDLQRPGYLE 53 >gi|86740246|ref|YP_480646.1| GntR family transcriptional regulator [Frankia sp. CcI3] gi|86567108|gb|ABD10917.1| transcriptional regulator, GntR family [Frankia sp. CcI3] Length = 234 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ +S L + ++ L GI+ RG GG+ RP Sbjct: 36 ELLARLGVSRPSLRQAVRLLQAEGILTVRRGHHGGLYGQRP 76 >gi|18313234|ref|NP_559901.1| hypothetical protein PAE2282 [Pyrobaculum aerophilum str. IM2] gi|18160752|gb|AAL64083.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 239 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-----VRLCRP 69 +Y A+ + +AEA I ++ ++ L G+V +GG R P Sbjct: 20 IYLALVERGESTARDLAEALNIPYTKVYAYIERLRDMGLVI----PQGGSRPLKYR-AVP 74 Query: 70 ADQI 73 ++ Sbjct: 75 PAEV 78 >gi|30261454|ref|NP_843831.1| GntR family transcriptional regulator [Bacillus anthracis str. Ames] gi|47526646|ref|YP_017995.1| GntR family transcriptional regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47566243|ref|ZP_00237271.1| transcriptional regulator, GntR family [Bacillus cereus G9241] gi|49184288|ref|YP_027540.1| GntR family transcriptional regulator [Bacillus anthracis str. Sterne] gi|49480106|ref|YP_035578.1| GntR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143983|ref|YP_082844.1| GntR family transcriptional regulator [Bacillus cereus E33L] gi|118476923|ref|YP_894074.1| GntR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870455|ref|ZP_02215110.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0488] gi|167634273|ref|ZP_02392594.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0442] gi|167639211|ref|ZP_02397483.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0193] gi|170686806|ref|ZP_02878026.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0465] gi|170706242|ref|ZP_02896703.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0389] gi|177651459|ref|ZP_02934248.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0174] gi|190568022|ref|ZP_03020932.1| transcriptional regulator, GntR family [Bacillus anthracis Tsiankovskii-I] gi|196035343|ref|ZP_03102748.1| transcriptional regulator, GntR family [Bacillus cereus W] gi|196040640|ref|ZP_03107939.1| transcriptional regulator, GntR family [Bacillus cereus NVH0597-99] gi|196046530|ref|ZP_03113755.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108] gi|206977605|ref|ZP_03238498.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97] gi|217958932|ref|YP_002337480.1| transcriptional regulator, GntR family [Bacillus cereus AH187] gi|218902562|ref|YP_002450396.1| transcriptional regulator, GntR family [Bacillus cereus AH820] gi|222095089|ref|YP_002529149.1| transcriptional regulator, gntr family [Bacillus cereus Q1] gi|225863318|ref|YP_002748696.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102] gi|227815797|ref|YP_002815806.1| transcriptional regulator, GntR family [Bacillus anthracis str. CDC 684] gi|228914026|ref|ZP_04077648.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926486|ref|ZP_04089557.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932737|ref|ZP_04095608.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945051|ref|ZP_04107412.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228984530|ref|ZP_04144707.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229029126|ref|ZP_04185223.1| Transcriptional regulator, GntR [Bacillus cereus AH1271] gi|229090409|ref|ZP_04221651.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-42] gi|229120995|ref|ZP_04250236.1| Transcriptional regulator, GntR [Bacillus cereus 95/8201] gi|229138144|ref|ZP_04266741.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST26] gi|229155021|ref|ZP_04283135.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 4342] gi|229172095|ref|ZP_04299660.1| Transcriptional regulator, GntR [Bacillus cereus MM3] gi|229183647|ref|ZP_04310870.1| Transcriptional regulator, GntR [Bacillus cereus BGSC 6E1] gi|229189535|ref|ZP_04316551.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 10876] gi|229195653|ref|ZP_04322419.1| Transcriptional regulator, GntR [Bacillus cereus m1293] gi|229603260|ref|YP_002865868.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0248] gi|254682482|ref|ZP_05146343.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. CNEVA-9066] gi|254726145|ref|ZP_05187927.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. A1055] gi|254733898|ref|ZP_05191612.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Western North America USA6153] gi|254740412|ref|ZP_05198103.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Kruger B] gi|254753803|ref|ZP_05205838.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Vollum] gi|254758898|ref|ZP_05210925.1| transcriptional regulator, GntR family protein [Bacillus anthracis str. Australia 94] gi|300118597|ref|ZP_07056336.1| transcriptional regulator, GntR family protein [Bacillus cereus SJ1] gi|301052994|ref|YP_003791205.1| GntR family transcriptional regulator [Bacillus anthracis CI] gi|30255308|gb|AAP25317.1| transcriptional regulator, GntR family [Bacillus anthracis str. Ames] gi|47501794|gb|AAT30470.1| transcriptional regulator, GntR family [Bacillus anthracis str. 'Ames Ancestor'] gi|47556796|gb|EAL15127.1| transcriptional regulator, GntR family [Bacillus cereus G9241] gi|49178215|gb|AAT53591.1| transcriptional regulator, GntR family [Bacillus anthracis str. Sterne] gi|49331662|gb|AAT62308.1| transcriptional regulator, GntR family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977452|gb|AAU19002.1| transcriptional regulator, GntR family [Bacillus cereus E33L] gi|118416148|gb|ABK84567.1| transcriptional regulator, GntR family [Bacillus thuringiensis str. Al Hakam] gi|164713950|gb|EDR19472.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0488] gi|167512650|gb|EDR88024.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0193] gi|167530161|gb|EDR92887.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0442] gi|170128776|gb|EDS97642.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0389] gi|170669329|gb|EDT20072.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0465] gi|172082737|gb|EDT67800.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0174] gi|190560756|gb|EDV14731.1| transcriptional regulator, GntR family [Bacillus anthracis Tsiankovskii-I] gi|195992020|gb|EDX55983.1| transcriptional regulator, GntR family [Bacillus cereus W] gi|196022714|gb|EDX61396.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108] gi|196028430|gb|EDX67038.1| transcriptional regulator, GntR family [Bacillus cereus NVH0597-99] gi|206744178|gb|EDZ55592.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97] gi|217065481|gb|ACJ79731.1| transcriptional regulator, GntR family [Bacillus cereus AH187] gi|218536278|gb|ACK88676.1| transcriptional regulator, GntR family [Bacillus cereus AH820] gi|221239147|gb|ACM11857.1| transcriptional regulator, GntR family [Bacillus cereus Q1] gi|225786539|gb|ACO26756.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102] gi|227003946|gb|ACP13689.1| transcriptional regulator, GntR family [Bacillus anthracis str. CDC 684] gi|228587902|gb|EEK45954.1| Transcriptional regulator, GntR [Bacillus cereus m1293] gi|228593980|gb|EEK51783.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 10876] gi|228599890|gb|EEK57487.1| Transcriptional regulator, GntR [Bacillus cereus BGSC 6E1] gi|228611438|gb|EEK68695.1| Transcriptional regulator, GntR [Bacillus cereus MM3] gi|228628579|gb|EEK85292.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 4342] gi|228645286|gb|EEL01521.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST26] gi|228662427|gb|EEL18026.1| Transcriptional regulator, GntR [Bacillus cereus 95/8201] gi|228692897|gb|EEL46616.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-42] gi|228732184|gb|EEL83069.1| Transcriptional regulator, GntR [Bacillus cereus AH1271] gi|228775233|gb|EEM23622.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228814720|gb|EEM60980.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826891|gb|EEM72654.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833074|gb|EEM78640.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845631|gb|EEM90660.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267668|gb|ACQ49305.1| transcriptional regulator, GntR family [Bacillus anthracis str. A0248] gi|298724121|gb|EFI64824.1| transcriptional regulator, GntR family protein [Bacillus cereus SJ1] gi|300375163|gb|ADK04067.1| transcriptional regulator, GntR family [Bacillus cereus biovar anthracis str. CI] Length = 126 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|329941263|ref|ZP_08290542.1| transcriptional repressor [Streptomyces griseoaurantiacus M045] gi|329299794|gb|EGG43693.1| transcriptional repressor [Streptomyces griseoaurantiacus M045] Length = 325 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++AE +S + + + L + G V RG GG RL P Sbjct: 28 ELAERLGVSRRTVRRDVDRLRELGYPVRASRGAEGGYRLVAGTAMPP 74 >gi|322614734|gb|EFY11663.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618840|gb|EFY15728.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623547|gb|EFY20386.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629154|gb|EFY25933.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631875|gb|EFY28629.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637388|gb|EFY34090.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642073|gb|EFY38683.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647892|gb|EFY44367.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652365|gb|EFY48720.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653268|gb|EFY49601.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660583|gb|EFY56819.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664735|gb|EFY60928.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669212|gb|EFY65362.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670757|gb|EFY66890.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679004|gb|EFY75059.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682033|gb|EFY78058.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685138|gb|EFY81135.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192968|gb|EFZ78191.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196950|gb|EFZ82092.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203935|gb|EFZ88952.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206980|gb|EFZ91933.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214183|gb|EFZ98941.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323219165|gb|EGA03662.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226999|gb|EGA11180.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230183|gb|EGA14303.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233921|gb|EGA18010.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238385|gb|EGA22443.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244072|gb|EGA28081.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323251859|gb|EGA35722.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257855|gb|EGA41534.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261131|gb|EGA44723.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264939|gb|EGA48438.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272502|gb|EGA55909.1| extracellular solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 566 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|320450542|ref|YP_004202638.1| transcriptional repressor [Thermus scotoductus SA-01] gi|320150711|gb|ADW22089.1| transcriptional repressor [Thermus scotoductus SA-01] Length = 223 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY ++ L P +AE + + ++L+ L G+VE G RL Sbjct: 12 DY-LKQLFLLEAERQGPVPTQALAERLGVKPPSVTEMLKKLTALGLVE--HAPYQGARLT 68 Query: 68 RPADQITILDVVK 80 +I + +V++ Sbjct: 69 EAGRRIAL-EVLR 80 >gi|294142949|ref|YP_003558927.1| birA bifunctional protein [Shewanella violacea DSS12] gi|293329418|dbj|BAJ04149.1| birA bifunctional protein [Shewanella violacea DSS12] Length = 309 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73 A+ + ++A+ IS + K + L G+ + +V+G+ G +L P I Sbjct: 3 ALSGEQFVSGEELAKQAGISRTAISKHIDSLEDYGVEIFSVKGK--GYKLANPVSLI 57 >gi|269216217|ref|ZP_06160071.1| iron-dependent transcriptional regulator [Slackia exigua ATCC 700122] gi|269130476|gb|EEZ61554.1| iron-dependent transcriptional regulator [Slackia exigua ATCC 700122] Length = 142 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY + ++ A P R +A +S+ + K L L VE + G V L Sbjct: 24 DY-LEAIVDLAGPERKPIRAVDLANKLDVSKASVSKALTTLKAKSYVE--QPYYGDVTLT 80 Query: 68 RPADQI 73 ++ Sbjct: 81 EEGEEY 86 >gi|289578232|ref|YP_003476859.1| MarR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289527945|gb|ADD02297.1| transcriptional regulator, MarR family [Thermoanaerobacter italicus Ab9] Length = 146 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 V++ + + P + IA IS L I+ LV+ G+V+ Sbjct: 44 VIIILSENKSNPMYMKDIALELGISPSTLTSIVDKLVEKGLVQ 86 >gi|186476223|ref|YP_001857693.1| IclR family transcriptional regulator [Burkholderia phymatum STM815] gi|184192682|gb|ACC70647.1| transcriptional regulator, IclR family [Burkholderia phymatum STM815] Length = 268 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTDLHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|153012048|ref|YP_001373259.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188] gi|151563936|gb|ABS17430.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188] Length = 115 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP- 69 R+++ C++ + ++ E + + L + L L +GIVET R G++ RL Sbjct: 39 RLMIVCSLVEGE-YSVGRMEEKIGVHQPHLSQHLTVLRSSGIVETRREGKQIFYRLTEEK 97 Query: 70 ADQI--TILDVV 79 A Q+ ++ D+ Sbjct: 98 AAQLVASLYDIF 109 >gi|30019506|ref|NP_831137.1| GntR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|206968030|ref|ZP_03228986.1| transcriptional regulator, GntR family [Bacillus cereus AH1134] gi|218231280|ref|YP_002366136.1| transcriptional regulator, GntR family [Bacillus cereus B4264] gi|228907085|ref|ZP_04070949.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 200] gi|228920166|ref|ZP_04083514.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228957730|ref|ZP_04119473.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229043196|ref|ZP_04190918.1| Transcriptional regulator, GntR [Bacillus cereus AH676] gi|229069006|ref|ZP_04202299.1| Transcriptional regulator, GntR [Bacillus cereus F65185] gi|229078639|ref|ZP_04211195.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-2] gi|229108911|ref|ZP_04238514.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-15] gi|229126770|ref|ZP_04255782.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-Cer4] gi|229177860|ref|ZP_04305233.1| Transcriptional regulator, GntR [Bacillus cereus 172560W] gi|296502034|ref|YP_003663734.1| GntR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29895050|gb|AAP08338.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579] gi|206736950|gb|EDZ54097.1| transcriptional regulator, GntR family [Bacillus cereus AH1134] gi|218159237|gb|ACK59229.1| transcriptional regulator, GntR family [Bacillus cereus B4264] gi|228605651|gb|EEK63099.1| Transcriptional regulator, GntR [Bacillus cereus 172560W] gi|228656710|gb|EEL12536.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-Cer4] gi|228674512|gb|EEL29753.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-15] gi|228704642|gb|EEL57072.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-2] gi|228714118|gb|EEL66000.1| Transcriptional regulator, GntR [Bacillus cereus F65185] gi|228726057|gb|EEL77292.1| Transcriptional regulator, GntR [Bacillus cereus AH676] gi|228801923|gb|EEM48797.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228839365|gb|EEM84658.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852589|gb|EEM97379.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 200] gi|296323086|gb|ADH06014.1| GntR family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 126 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|20094014|ref|NP_613861.1| transcriptional regulator [Methanopyrus kandleri AV19] gi|19886985|gb|AAM01791.1| Predicted transcriptional regulator [Methanopyrus kandleri AV19] Length = 129 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG--RRGGVR-LCRPA 70 + P + +AE S K+LQ LV+ G+VE R GG R L RPA Sbjct: 47 EEAPFTVEDVAEIINRSRSTAQKMLQSLVRVGMVERERETLPGGGRRYLYRPA 99 >gi|326939077|gb|AEA14973.1| GntR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 126 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|315441507|ref|YP_004074384.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1] gi|315265162|gb|ADU01903.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1] Length = 119 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 1 MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L D ++++ +A +SE + L L KAG+V + R Sbjct: 34 MRLKALADPVRVKMMSLLFSSRPGEETSGDLAAVLDLSESTVSHHLGQLRKAGLVISDR 92 >gi|255102269|ref|ZP_05331246.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] Length = 320 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++D QIAE I+ +++ + L +G+ + + G GG L Sbjct: 14 LNSDKKITAKQIAEKLEINIRTVYRYIDVLSASGVPIISDTGHNGGYSL 62 >gi|254464403|ref|ZP_05077814.1| phosphonates metabolism transcriptional regulator PhnF [Rhodobacterales bacterium Y4I] gi|206685311|gb|EDZ45793.1| phosphonates metabolism transcriptional regulator PhnF [Rhodobacterales bacterium Y4I] Length = 237 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 +Q++ ++ + + L + G+V + RG GV + I V+ Sbjct: 33 AQLSARFGVNRHTVRRALADMAAQGLVHSRRGA--GVFVAAKPTDYPIGKRVR 83 >gi|209883390|ref|YP_002287247.1| transcriptional regulator, ArsR family [Oligotropha carboxidovorans OM5] gi|209871586|gb|ACI91382.1| transcriptional regulator, ArsR family [Oligotropha carboxidovorans OM5] Length = 123 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 15/42 (35%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A H IA + + L L +AG++E R Sbjct: 25 LAEHEPDGLAAGDIARRLDVPHNTMSTHLATLTRAGLIEAER 66 >gi|126700761|ref|YP_001089658.1| putative transcriptional regulator [Clostridium difficile 630] gi|255308129|ref|ZP_05352300.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115252198|emb|CAJ70036.1| Transcriptional regulator, DeoR family [Clostridium difficile] Length = 320 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++D QIAE I+ +++ + L +G+ + + G GG L Sbjct: 14 LNSDKKITAKQIAEKLEINIRTVYRYIDVLSASGVPIISDTGHNGGYSL 62 >gi|54025203|ref|YP_119445.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016711|dbj|BAD58081.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 218 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITIL 76 A+ P ++++E IS L + ++ L + G++ G RG RL R D+ I Sbjct: 32 ALAPSSPLVETELSEKLAISRGTLREAMRQLQQEGLITA--GPRG--RLYVRHLDEKEIR 87 Query: 77 DV--VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 D+ V+A ES V E L LR+AL+A ++S++ Sbjct: 88 DIFAVRAALESLAVRELAE-------RTDRAELIPTLRRALDAMAR--AEHSLDE 133 >gi|19552837|ref|NP_600839.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62390508|ref|YP_225910.1| transcription regulator ArsR [Corynebacterium glutamicum ATCC 13032] gi|21324394|dbj|BAB99018.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41325845|emb|CAF21634.1| Bacterial regulatory protein, arsR family [Corynebacterium glutamicum ATCC 13032] Length = 101 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L+ H +S++A+ ++ LQ L G+VE+ + Sbjct: 27 LRLLIALHYHGPGEATVSELADIVGVTLPTASAALQLLADNGVVESFK 74 >gi|226942674|ref|YP_002797747.1| GntR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226717601|gb|ACO76772.1| Transcriptional regulatory protein, GntR family [Azotobacter vinelandii DJ] Length = 252 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 17/109 (15%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71 + S+I EA +S + + + L +G VET G G R+ Sbjct: 37 GEKLPTESEIMEAHGVSRTVVREAISRLQASGTVETRHGIGTFVLDTPSSSGFRI--DPA 94 Query: 72 QI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + EC S + +R AL+AF Sbjct: 95 TIVTLRDVMAILELRVSLEVECAGLAA----RRRSAEQLAAMRAALDAF 139 >gi|327356498|gb|EGE85355.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis ATCC 18188] Length = 826 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +RV++ YPNR+ A+ + + +I L K G + G + Sbjct: 519 ALRVII----EEGYPNRVRDFAQKLNCNGQTIVQITDMLRKQGFLLATPGSK 566 >gi|317488735|ref|ZP_07947271.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316912166|gb|EFV33739.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 131 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---CRPADQI-TIL 76 D + +A ++ + K+ L + G +++ R R+G L +P I + Sbjct: 34 GDQLPTVRGLAADVEVNYNTVSKVYMSLEQDGYIQSKR-RQGAFVLDVSDKPGVSISSTA 92 Query: 77 DVVKATEESFFVAECFA 93 ++V S ++ CF Sbjct: 93 EIVT----SEYLKRCFE 105 >gi|311281117|ref|YP_003943348.1| regulatory protein GntR HTH [Enterobacter cloacae SCF1] gi|308750312|gb|ADO50064.1| regulatory protein GntR HTH [Enterobacter cloacae SCF1] Length = 256 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +A+ +S + + + L L ++ TVRGR GG Sbjct: 58 ADLAKMMGVSHITIREALNTLRANNLIHTVRGRNGG 93 >gi|307330826|ref|ZP_07609961.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] gi|306883539|gb|EFN14590.1| Helix-turn-helix type 11 domain protein [Streptomyces violaceusniger Tu 4113] Length = 326 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +++A ++E + + + L + G V+++ G GG R Sbjct: 24 AELARHLDVTERTVRRDIDRLRELGYGVQSIPGPGGGYR 62 >gi|284042388|ref|YP_003392728.1| hypothetical protein Cwoe_0920 [Conexibacter woesei DSM 14684] gi|283946609|gb|ADB49353.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM 14684] Length = 327 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 ++A+ +S + + + L + G V+ + G GG RL P Sbjct: 24 QELADRLDVSCRTIRRDVDRLRELGYPVDALTGPNGGYRLHAGTAMPP 71 >gi|270261317|ref|ZP_06189590.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044801|gb|EFA17892.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 103 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + + ++A+ I + L + L L + G+V T R Sbjct: 26 LLLLCQLSQREMSVGELAQTLGIRQPTLSQQLSVLRQEGLVSTRR 70 >gi|239608033|gb|EEQ85020.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis ER-3] Length = 696 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +RV++ YPNR+ A+ + + +I L K G + G + Sbjct: 389 ALRVII----EEGYPNRVRDFAQKLNCNGQTIVQITDMLRKQGFLLATPGSK 436 >gi|261200068|ref|XP_002626435.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis SLH14081] gi|239594643|gb|EEQ77224.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis SLH14081] Length = 764 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +RV++ YPNR+ A+ + + +I L K G + G + Sbjct: 531 ALRVII----EEGYPNRVRDFAQKLNCNGQTIVQITDMLRKQGFLLATPGSK 578 >gi|223983867|ref|ZP_03634030.1| hypothetical protein HOLDEFILI_01311 [Holdemania filiformis DSM 12042] gi|223964168|gb|EEF68517.1| hypothetical protein HOLDEFILI_01311 [Holdemania filiformis DSM 12042] Length = 299 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 5 KRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 T Y I R + Y H + ++A++ ISE++L+K+ + Sbjct: 182 SSTRYLISRAVSYVYQHIGDHLTVKEVADSLNISEIYLYKLFKE 225 >gi|118463658|ref|YP_880734.1| transcriptional regulator [Mycobacterium avium 104] gi|118164945|gb|ABK65842.1| putative transcriptional regulator [Mycobacterium avium 104] Length = 118 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L D +RV LM D +A A +SE + L L AG V + R Sbjct: 34 MRLKALAD-PVRVKLMSLLFTADGTCTTGSLAAAVGLSESTVSHHLGQLRTAGFVASDR 91 >gi|111021113|ref|YP_704085.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110820643|gb|ABG95927.1| possible transcriptional regulator, ArsR family protein [Rhodococcus jostii RHA1] Length = 119 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 I+++ +D +A +SE + L L KAG+V++VR Sbjct: 45 IKLMSILLTASDGEVCTCDLATGVGLSESTVSHHLGQLKKAGMVQSVR 92 >gi|52144402|ref|YP_082427.1| hypothetical protein BCZK0823 [Bacillus cereus E33L] gi|51977871|gb|AAU19421.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 251 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ +H RIS++AE + E + + AGI +ET +GR GG L Sbjct: 10 MIEL-LHARGKMRISELAEILEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63 >gi|24380380|ref|NP_722335.1| putative transcriptional regulator; repressor of the trehalose operon [Streptococcus mutans UA159] gi|21217544|gb|AAM43947.1|AF510742_1 TreR [Streptococcus mutans] gi|24378401|gb|AAN59641.1|AE015026_5 putative transcriptional regulator; repressor of the trehalose operon [Streptococcus mutans UA159] Length = 237 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 22/41 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY ++++ S + K LQ L KAG ++TV+GR Sbjct: 23 GDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRG 63 >gi|330807595|ref|YP_004352057.1| GntR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375703|gb|AEA67053.1| putative Transcription factor, GntR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 247 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------ADQI-TILDVVK 80 I EA +S + + L L AG+VET G G L P I T+ DV+ Sbjct: 44 IMEAEGVSRSVVREALSRLQAAGLVETRHGV-GTFVLDMPAPEGFTLGPATIATLSDVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|322833685|ref|YP_004213712.1| IclR family transcriptional regulator [Rahnella sp. Y9602] gi|321168886|gb|ADW74585.1| transcriptional regulator, IclR family [Rahnella sp. Y9602] Length = 264 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +L H + IA + + +I+ L + G+V + GGVRL Sbjct: 21 AATILNSLGKHPQG-MSLGAIANEVDLPRSTVQRIVAALAEEGLVRSE--GSGGVRLG 75 >gi|307195522|gb|EFN77408.1| Histone-lysine N-methyltransferase SETMAR [Harpegnathos saltator] Length = 137 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I+ ++ +D N IAE +S F+ K L K G V+ Sbjct: 76 IKAIID----SDRHNTTRDIAEKLNVSHTFIEK---NLKKLGYVK 113 >gi|297156278|gb|ADI05990.1| DeoR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 328 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++AE +S + + ++ L AG+ V T RG RGG+ L Sbjct: 17 GQTSARELAERLEVSVRTVMRDVEALSAAGVPVYTERGARGGIAL 61 >gi|296501406|ref|YP_003663106.1| DeoR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296322458|gb|ADH05386.1| DeoR family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 322 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70 >gi|284044744|ref|YP_003395084.1| drug resistance transporter EmrB/QacA subfamily [Conexibacter woesei DSM 14684] gi|283948965|gb|ADB51709.1| drug resistance transporter, EmrB/QacA subfamily [Conexibacter woesei DSM 14684] Length = 666 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L A H P ++ +A C ++ L L AG VE G G + L Sbjct: 553 ALWLLARIAEH--EPVTLAHVATHCGVAHRRLVTPFSELADAGYVE---GEGGALTLTPA 607 Query: 70 ADQITILDV 78 I + V Sbjct: 608 GAAIRVRMV 616 >gi|269128744|ref|YP_003302114.1| Helix-turn-helix type 11 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268313702|gb|ACZ00077.1| Helix-turn-helix type 11 domain protein [Thermomonospora curvata DSM 43183] Length = 327 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE + + + + L + G V++ G GG RL Sbjct: 22 TGAELAERLQVGLRTVRRDIDRLRELGYPVDSTPGVAGGYRLG 64 >gi|228919502|ref|ZP_04082866.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840145|gb|EEM85422.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 328 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 32 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 72 >gi|228951139|ref|ZP_04113255.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808549|gb|EEM55052.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|228957068|ref|ZP_04118841.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802614|gb|EEM49458.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 327 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|228963745|ref|ZP_04124887.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar sotto str. T04001] gi|228795981|gb|EEM43447.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar sotto str. T04001] Length = 328 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 32 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 72 >gi|228937886|ref|ZP_04100514.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970767|ref|ZP_04131407.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977342|ref|ZP_04137737.1| Transcriptional regulator, DeoR [Bacillus thuringiensis Bt407] gi|228782319|gb|EEM30502.1| Transcriptional regulator, DeoR [Bacillus thuringiensis Bt407] gi|228788892|gb|EEM36831.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821792|gb|EEM67792.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938365|gb|AEA14261.1| DeoR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|228983849|ref|ZP_04144044.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775898|gb|EEM24269.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 331 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|229010079|ref|ZP_04167293.1| Transcriptional regulator, DeoR [Bacillus mycoides DSM 2048] gi|228751212|gb|EEM01024.1| Transcriptional regulator, DeoR [Bacillus mycoides DSM 2048] Length = 326 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70 >gi|229042510|ref|ZP_04190255.1| Transcriptional regulator, DeoR [Bacillus cereus AH676] gi|228726863|gb|EEL78075.1| Transcriptional regulator, DeoR [Bacillus cereus AH676] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|229056421|ref|ZP_04195834.1| Transcriptional regulator, DeoR [Bacillus cereus AH603] gi|228720895|gb|EEL72444.1| Transcriptional regulator, DeoR [Bacillus cereus AH603] Length = 327 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|229068333|ref|ZP_04201636.1| Transcriptional regulator, DeoR [Bacillus cereus F65185] gi|228714794|gb|EEL66666.1| Transcriptional regulator, DeoR [Bacillus cereus F65185] Length = 313 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|229077961|ref|ZP_04210570.1| Transcriptional regulator, DeoR [Bacillus cereus Rock4-2] gi|228705299|gb|EEL57676.1| Transcriptional regulator, DeoR [Bacillus cereus Rock4-2] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|229083883|ref|ZP_04216192.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-44] gi|228699461|gb|EEL52137.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-44] Length = 327 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|229101409|ref|ZP_04232152.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-28] gi|228681985|gb|EEL36119.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-28] Length = 316 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 24 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 64 >gi|229108257|ref|ZP_04237879.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-15] gi|228675273|gb|EEL30495.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-15] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|229131592|ref|ZP_04260474.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST196] gi|228651818|gb|EEL07773.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST196] Length = 326 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70 >gi|229137448|ref|ZP_04266059.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST26] gi|228646006|gb|EEL02229.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST26] Length = 331 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|229148986|ref|ZP_04277231.1| Transcriptional regulator, DeoR [Bacillus cereus m1550] gi|228634526|gb|EEK91110.1| Transcriptional regulator, DeoR [Bacillus cereus m1550] Length = 331 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|229154350|ref|ZP_04282470.1| Transcriptional regulator, DeoR [Bacillus cereus ATCC 4342] gi|228629174|gb|EEK85881.1| Transcriptional regulator, DeoR [Bacillus cereus ATCC 4342] Length = 327 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|229159728|ref|ZP_04287737.1| Transcriptional regulator, DeoR [Bacillus cereus R309803] gi|228623753|gb|EEK80570.1| Transcriptional regulator, DeoR [Bacillus cereus R309803] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|229165593|ref|ZP_04293367.1| Transcriptional regulator, DeoR [Bacillus cereus AH621] gi|228617876|gb|EEK74927.1| Transcriptional regulator, DeoR [Bacillus cereus AH621] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|229177173|ref|ZP_04304562.1| Transcriptional regulator, DeoR [Bacillus cereus 172560W] gi|228606354|gb|EEK63786.1| Transcriptional regulator, DeoR [Bacillus cereus 172560W] Length = 313 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|229194966|ref|ZP_04321747.1| Transcriptional regulator, DeoR [Bacillus cereus m1293] gi|228588534|gb|EEK46571.1| Transcriptional regulator, DeoR [Bacillus cereus m1293] Length = 331 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|261419714|ref|YP_003253396.1| IclR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319766532|ref|YP_004132033.1| IclR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376171|gb|ACX78914.1| transcriptional regulator, IclR family [Geobacillus sp. Y412MC61] gi|317111398|gb|ADU93890.1| transcriptional regulator, IclR family [Geobacillus sp. Y412MC52] Length = 253 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L ++ ++ I+ I+E IS+ ++LQ L G V+ Sbjct: 16 ALRLLQLFSM-DETELSITDISERLNISKSAAHRLLQTLKSEGFVK 60 >gi|198276634|ref|ZP_03209165.1| hypothetical protein BACPLE_02830 [Bacteroides plebeius DSM 17135] gi|198270159|gb|EDY94429.1| hypothetical protein BACPLE_02830 [Bacteroides plebeius DSM 17135] Length = 631 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 A+ + P + +I + + E L K++ LV I+ G Sbjct: 586 ALLKENPLSLQEIKDKMQVPENHLMKVVSYLVSEEIIRQENG 627 >gi|206978379|ref|ZP_03239251.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|222094402|ref|YP_002528461.1| transcriptional regulator, deor family [Bacillus cereus Q1] gi|206743413|gb|EDZ54848.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|221238459|gb|ACM11169.1| Transcriptional regulator, DeoR family [Bacillus cereus Q1] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|218895702|ref|YP_002444113.1| hypothetical protein BCG9842_B4654 [Bacillus cereus G9842] gi|228899333|ref|ZP_04063596.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 4222] gi|218542212|gb|ACK94606.1| conserved hypothetical protein [Bacillus cereus G9842] gi|228860364|gb|EEN04761.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 4222] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|218231818|ref|YP_002365444.1| hypothetical protein BCB4264_A0684 [Bacillus cereus B4264] gi|218159775|gb|ACK59767.1| conserved hypothetical protein [Bacillus cereus B4264] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|217958234|ref|YP_002336780.1| hypothetical protein BCAH187_A0777 [Bacillus cereus AH187] gi|217067346|gb|ACJ81596.1| conserved hypothetical protein [Bacillus cereus AH187] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|111224265|ref|YP_715059.1| GntR family transcriptional regulator [Frankia alni ACN14a] gi|111151797|emb|CAJ63517.1| Putative transcriptional regulator (GntR-family) [Frankia alni ACN14a] Length = 228 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ +S L + ++ L GI+ RG GG+ RP Sbjct: 30 ELLARFGVSRPSLRQAVRLLQAEGILTVRRGHHGGLYGQRP 70 >gi|42779794|ref|NP_977041.1| hypothetical protein BCE_0716 [Bacillus cereus ATCC 10987] gi|42735711|gb|AAS39649.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 348 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 52 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 92 >gi|30018832|ref|NP_830463.1| DeoR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229126080|ref|ZP_04255102.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-Cer4] gi|229143375|ref|ZP_04271806.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST24] gi|29894374|gb|AAP07664.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579] gi|228640182|gb|EEK96581.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST24] gi|228657402|gb|EEL13218.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-Cer4] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|16265038|ref|NP_437830.1| putative transcriptional regulator, gntR family protein [Sinorhizobium meliloti 1021] gi|307309391|ref|ZP_07589050.1| transcriptional regulator, GntR family [Sinorhizobium meliloti BL225C] gi|15141177|emb|CAC49690.1| putative transcriptional regulator, gntR family protein [Sinorhizobium meliloti 1021] gi|306900121|gb|EFN30740.1| transcriptional regulator, GntR family [Sinorhizobium meliloti BL225C] Length = 257 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R ++ A+++ P ++ A +S + + + ++ L G ++T G+ Sbjct: 29 LRGMIERRELAVNDKLP-SERELVAAYGVSRITVRQAIKELENLGYLQTRPGKG 81 >gi|163938571|ref|YP_001643455.1| helix-turn-helix type 11 domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163860768|gb|ABY41827.1| Helix-turn-helix type 11 domain protein [Bacillus weihenstephanensis KBAB4] Length = 317 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|47568100|ref|ZP_00238805.1| transcriptional regulator, DeoR family [Bacillus cereus G9241] gi|47555254|gb|EAL13600.1| transcriptional regulator, DeoR family [Bacillus cereus G9241] Length = 331 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75 >gi|325662827|ref|ZP_08151396.1| hypothetical protein HMPREF0490_02136 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470879|gb|EGC74108.1| hypothetical protein HMPREF0490_02136 [Lachnospiraceae bacterium 4_1_37FAA] Length = 327 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + ++ E +S ++K++ L + G +E VR + G RL D Sbjct: 10 RESSGHVSGQELCERFQVSRTAIWKVISQLKEEGYEIEAVRNK--GYRLQESPD 61 >gi|294787836|ref|ZP_06753080.1| YihY family protein [Simonsiella muelleri ATCC 29453] gi|294484129|gb|EFG31812.1| YihY family protein [Simonsiella muelleri ATCC 29453] Length = 405 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Query: 11 IRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 IR+L+ + + + + + L IL L K G +++ + L + Sbjct: 285 IRILLKLDESRIQSKVLSVEDLRQVVNMDYDSLDNILLQLKKYGFIKSHK----NYWLLK 340 Query: 69 P-ADQITILDVV 79 +ITIL+++ Sbjct: 341 KLPTEITILELM 352 >gi|290581312|ref|YP_003485704.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254998211|dbj|BAH88812.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 237 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 22/41 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY ++++ S + K LQ L KAG ++TV+GR Sbjct: 23 GDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRG 63 >gi|238022761|ref|ZP_04603187.1| hypothetical protein GCWU000324_02672 [Kingella oralis ATCC 51147] gi|237865964|gb|EEP67100.1| hypothetical protein GCWU000324_02672 [Kingella oralis ATCC 51147] Length = 396 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 19/86 (22%) Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111 G V R GG LCR D+I + D+ +A F + C L ++ Sbjct: 330 GYVA---RRAGGWVLCRSPDEIGLGDLFRAF--------VFDADNSVCDDE---RLNGLM 375 Query: 112 RKALNAFFDVLTQYSIECLVRNRSSI 137 R D L + ++R + Sbjct: 376 RGV----ADGLDGR-LGDVLRGGKRM 396 >gi|229027588|ref|ZP_04183807.1| hypothetical protein bcere0029_57940 [Bacillus cereus AH1272] gi|228733717|gb|EEL84492.1| hypothetical protein bcere0029_57940 [Bacillus cereus AH1272] Length = 642 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Query: 15 MYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG--RRG---G 63 +Y A+ +IAE +SE + + ++ L K IV V+G R+G G Sbjct: 480 IYLAMQLSEIELEKEAFTKEEIAEIAHVSEKTVQRYIKELTKHSIVVNVKGNSRKGIKKG 539 Query: 64 VRLCR 68 ++ R Sbjct: 540 YKINR 544 >gi|192290890|ref|YP_001991495.1| hypothetical protein Rpal_2507 [Rhodopseudomonas palustris TIE-1] gi|192284639|gb|ACF01020.1| Helix-turn-helix type 11 domain protein [Rhodopseudomonas palustris TIE-1] Length = 321 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + ++AEAC +S +++ + L +G+ V RG GG RL Sbjct: 8 LQAKGRVTAPELAEACEVSVRTIYRDIDALAASGVPVYADRGAEGGYRL 56 >gi|220915850|ref|YP_002491154.1| ribonuclease BN [Anaeromyxobacter dehalogenans 2CP-1] gi|219953704|gb|ACL64088.1| ribonuclease BN [Anaeromyxobacter dehalogenans 2CP-1] Length = 439 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 12 RVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 R L+ A D +A + + L L + IV ++ GG+ R Sbjct: 300 RTLLLVAQAFDRGEDAPDPGDVAARLGATPEEASEALAALRQRAIVVSL--ADGGLVPAR 357 Query: 69 PADQITILDVVKATEE 84 P ++IT+LDV +A Sbjct: 358 PLEKITLLDVRQAVSG 373 >gi|20093980|ref|NP_613827.1| transcription regulator [Methanopyrus kandleri AV19] gi|19886942|gb|AAM01757.1| Predicted transcriptional regulator consisting of a V4R domain and a DNA-binding HTH domain [Methanopyrus kandleri AV19] Length = 245 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + IS IA +S+ + LQ L KAG+V+ ++ Sbjct: 27 LEERGSMTISDIARELNLSKSTVHHHLQELRKAGLVDVIK 66 >gi|39933773|ref|NP_946049.1| GntR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192289192|ref|YP_001989797.1| GntR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39647620|emb|CAE26140.1| possible transcriptional regulator, GntR family [Rhodopseudomonas palustris CGA009] gi|192282941|gb|ACE99321.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris TIE-1] Length = 242 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 15 MYCAIHNDYPNRI------SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + AI + ++IAE ++ + + L L + G+V RG Sbjct: 20 IELAIADGRYLPGGKLPGETEIAENYGVNRHTVRRALAALAERGLVRAERGSG 72 >gi|75759356|ref|ZP_00739453.1| Transcriptional regulator, GntR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896386|ref|YP_002444797.1| transcriptional regulator, GntR family [Bacillus cereus G9842] gi|228900035|ref|ZP_04064270.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 4222] gi|74493188|gb|EAO56307.1| Transcriptional regulator, GntR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540702|gb|ACK93096.1| transcriptional regulator, GntR family [Bacillus cereus G9842] gi|228859576|gb|EEN04001.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 4222] Length = 126 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|330910239|gb|EGH38749.1| oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Escherichia coli AA86] Length = 566 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|320449630|ref|YP_004201726.1| acetate operon repressor [Thermus scotoductus SA-01] gi|320149799|gb|ADW21177.1| acetate operon repressor [Thermus scotoductus SA-01] Length = 234 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+ VL A + +AE +++ L+++LQ LV+ G VE RG R+ Sbjct: 18 GLSVLQALAELKEAGLSP--LAERTGLTKSTLYRLLQTLVRHGFVEEERGV---YRVG-- 70 Query: 70 ADQITILDVV 79 + V Sbjct: 71 PKAFAVGQVY 80 >gi|312964530|ref|ZP_07778786.1| bacterial extracellular solute-binding s, family 5 Middle family protein [Escherichia coli 2362-75] gi|312290764|gb|EFR18641.1| bacterial extracellular solute-binding s, family 5 Middle family protein [Escherichia coli 2362-75] Length = 566 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|331656502|ref|ZP_08357464.1| putative extracellular solute-binding protein [Escherichia coli TA206] gi|331054750|gb|EGI26759.1| putative extracellular solute-binding protein [Escherichia coli TA206] Length = 571 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|300787330|ref|YP_003767621.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796844|gb|ADJ47219.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 136 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 I+VL A + ++++ E L + L L + G+V + R G L +P Sbjct: 28 IQVLEVLAAAGEEGTPVTRLLEVTDCEASHLSQHLAVLRRTGVVTSTRTGNAVEYWLAQP 87 >gi|316932134|ref|YP_004107116.1| GntR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599848|gb|ADU42383.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris DX-1] Length = 242 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 15 MYCAIHNDYPNRI------SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + AI + ++IAE ++ + + L L + G+V RG Sbjct: 20 IELAIADGRYLPGGKLPGETEIAENYGVNRHTVRRALAALAERGLVRAERGSG 72 >gi|331645630|ref|ZP_08346733.1| putative extracellular solute-binding protein [Escherichia coli M605] gi|281177616|dbj|BAI53946.1| conserved hypothetical protein [Escherichia coli SE15] gi|331044382|gb|EGI16509.1| putative extracellular solute-binding protein [Escherichia coli M605] Length = 566 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|269126827|ref|YP_003300197.1| regulatory protein ArsR [Thermomonospora curvata DSM 43183] gi|268311785|gb|ACY98159.1| regulatory protein ArsR [Thermomonospora curvata DSM 43183] Length = 328 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R + A+ D P + +AE +S + L L +AG++ R R G Sbjct: 262 RAALLVAL--DVPASTATLAERHGLSPSGVSAHLTALHRAGLLT--RRRHG 308 >gi|290960657|ref|YP_003491839.1| regulator [Streptomyces scabiei 87.22] gi|260650183|emb|CBG73299.1| putative regulator [Streptomyces scabiei 87.22] Length = 244 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-- 63 R+ +RV + D +AE I E+ + + L+ + + G+++ RGR GG Sbjct: 43 RSRIALRVRLRSVRPGDRLPDAGVLAEELGIGEITVRRALEGMCQDGLLDRRRGRAGGTF 102 Query: 64 --------VRLCRPADQITILDVVKAT 82 V L ++ L+ + Sbjct: 103 VAQEWDTVVALTHDPEEAASLEAFRLL 129 >gi|251778864|ref|ZP_04821784.1| transcriptional regulator, GntR family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083179|gb|EES49069.1| transcriptional regulator, GntR family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 132 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +++ I+ + K + L + GI+ET+RG+ Sbjct: 31 EGEKLPSVRELSSILTINPNTISKAYRELEREGIIETLRGKG 72 >gi|229102985|ref|ZP_04233674.1| catabolite protein activator [Bacillus cereus Rock3-28] gi|228680400|gb|EEL34588.1| catabolite protein activator [Bacillus cereus Rock3-28] Length = 233 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 IS IA+ +S + ++LQ L K ++E G Sbjct: 178 TSISSIADFIGVSYRHVIRVLQKLNKEKLIEKKNGV 213 >gi|229096877|ref|ZP_04227846.1| catabolite protein activator [Bacillus cereus Rock3-29] gi|229115865|ref|ZP_04245263.1| catabolite protein activator [Bacillus cereus Rock1-3] gi|228667608|gb|EEL23052.1| catabolite protein activator [Bacillus cereus Rock1-3] gi|228686487|gb|EEL40396.1| catabolite protein activator [Bacillus cereus Rock3-29] Length = 233 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 IS IA+ +S + ++LQ L K ++E G Sbjct: 178 TSISSIADFIGVSYRHVIRVLQKLNKEKLIEKKNGV 213 >gi|222032240|emb|CAP74979.1| Uncharacterized protein ybae [Escherichia coli LF82] gi|312945023|gb|ADR25850.1| hypothetical protein NRG857_02105 [Escherichia coli O83:H1 str. NRG 857C] Length = 566 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|222153787|ref|YP_002562964.1| MarR family regulatory protein [Streptococcus uberis 0140J] gi|222114600|emb|CAR43600.1| MarR family regulatory protein [Streptococcus uberis 0140J] Length = 150 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL+Y H + + I A CIS+ +++ + K G ++ Sbjct: 37 HVLIYLDKHQNQEIYVKDIENALCISKSVASNLVKRMEKNGFID 80 >gi|215485526|ref|YP_002327957.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli O127:H6 str. E2348/69] gi|215263598|emb|CAS07928.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli O127:H6 str. E2348/69] Length = 566 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|116873810|ref|YP_850591.1| hypothetical protein lwe2394 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742688|emb|CAK21812.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 298 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 R+L + + S++AE +S +++ + L+ AG V ++ G+ GG Sbjct: 5 RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVSLPGKNGGFM 59 >gi|110640706|ref|YP_668434.1| putative extracellular solute-binding protein [Escherichia coli 536] gi|191173698|ref|ZP_03035222.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli F11] gi|110342298|gb|ABG68535.1| putative extracellular solute-binding protein [Escherichia coli 536] gi|190906056|gb|EDV65671.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli F11] Length = 566 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|318056811|ref|ZP_07975534.1| ArsR family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318076875|ref|ZP_07984207.1| ArsR family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 146 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++++ R Sbjct: 40 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 87 >gi|269977817|ref|ZP_06184774.1| putative DNA-binding protein [Mobiluncus mulieris 28-1] gi|269933987|gb|EEZ90564.1| putative DNA-binding protein [Mobiluncus mulieris 28-1] Length = 495 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++L Y A H ++AE IS IL LVK G+V Sbjct: 438 KILDYLATHP--TASSRELAETAGISIGGTRAILNNLVKTGLVT 479 >gi|242238750|ref|YP_002986931.1| phosphonate metabolism transcriptional regulator PhnF [Dickeya dadantii Ech703] gi|242130807|gb|ACS85109.1| phophonate C-P lyase system transcriptional regulator PhnF, GntR family [Dickeya dadantii Ech703] Length = 239 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 DY Q+A ++ L + + LV G+V+ RG G + L RP Sbjct: 30 GDYLPSEQQLAARYDVNRHTLRRAVDELVNQGLVQRRRGV-GTLVLMRP 77 >gi|206967866|ref|ZP_03228822.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|206736786|gb|EDZ53933.1| conserved hypothetical protein [Bacillus cereus AH1134] Length = 317 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYVLDLSDMGLPIYAEQGRNGGYK 61 >gi|163855862|ref|YP_001630160.1| heat-inducible transcription repressor [Bordetella petrii DSM 12804] gi|163259590|emb|CAP41891.1| heat-inducible transcriptional repressor [Bordetella petrii] Length = 335 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 20/46 (43%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ L+ I + P +++ +S + ++ L G++ + Sbjct: 9 LKALIERHIADGQPVGSRTLSKVFDLSPATIRNVMADLEDLGLIHS 54 >gi|22537479|ref|NP_688330.1| MarR family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22534358|gb|AAN00203.1|AE014253_1 transcriptional regulator, MarR family [Streptococcus agalactiae 2603V/R] Length = 146 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 ++MY H D I + E IS+ +++ + K G + V Sbjct: 37 HLVMYLYKHPDKDMSIKAVEEILHISKSVASNLVKRMEKNGFIAIV 82 >gi|327309781|ref|YP_004336679.1| GntR domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326955116|gb|AEA28812.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190] Length = 254 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 D ++ +A +S + + L+ L +VET RG GG Sbjct: 48 GDRLPSEPELCKAFGVSRSTIREALRVLASQNLVETRRGATGG 90 >gi|319652299|ref|ZP_08006416.1| hypothetical protein HMPREF1013_03029 [Bacillus sp. 2_A_57_CT2] gi|317395960|gb|EFV76681.1| hypothetical protein HMPREF1013_03029 [Bacillus sp. 2_A_57_CT2] Length = 233 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 N+ +++A+ I + + K + L G + + +GR G R QI + Sbjct: 23 NEKLPSENELADQYGIPRMVVRKAYEQLQDLGFIFSKQGR-GSYVQNRK-QQIPL----- 75 Query: 81 ATEESFFVAECFASHKIDCPLVGSC 105 +E H D C Sbjct: 76 ILTGDISFSEKMNEHGYDFRSENVC 100 >gi|310826698|ref|YP_003959055.1| hypothetical protein ELI_1104 [Eubacterium limosum KIST612] gi|308738432|gb|ADO36092.1| predicted protein [Eubacterium limosum KIST612] Length = 500 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 D I +I+ IS + + L L + G + RGR Sbjct: 23 LYREGDSLPTIEKISGQFNISINTVRQSLINLERDGFIRLTRGR 66 >gi|251780643|ref|ZP_04823563.1| transcriptional regulatory protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084958|gb|EES50848.1| transcriptional regulatory protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 244 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 18/33 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S L + L L G+++ +RG+ Sbjct: 42 ELAKFIGVSRTTLRQALALLQDDGLIKNIRGKG 74 >gi|228964416|ref|ZP_04125530.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar sotto str. T04001] gi|228795273|gb|EEM42765.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar sotto str. T04001] Length = 126 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|226947132|ref|YP_002802205.1| multidrug efflux pump operon transcriptional regulator protein [Azotobacter vinelandii DJ] gi|226722059|gb|ACO81230.1| multidrug efflux pump operon transcriptional regulator protein [Azotobacter vinelandii DJ] Length = 261 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ H ++ IA+A + + +I+ L +VE + G GG RL Sbjct: 26 IMRTLGEHPQG-LSLAAIAQAVKLPRSTVQRIVCALEAEYLVEAM-GPSGGFRLG 78 >gi|188588660|ref|YP_001920884.1| transcriptional regulatory protein [Clostridium botulinum E3 str. Alaska E43] gi|188498941|gb|ACD52077.1| transcriptional regulatory protein [Clostridium botulinum E3 str. Alaska E43] Length = 244 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 18/33 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S L + L L G+++ +RG+ Sbjct: 42 ELAKFIGVSRTTLRQALALLQDDGLIKNIRGKG 74 >gi|223935063|ref|ZP_03626982.1| transcriptional regulator, GntR family [bacterium Ellin514] gi|223896516|gb|EEF62958.1| transcriptional regulator, GntR family [bacterium Ellin514] Length = 240 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + P +I E +S K L L K G V ++G+ Sbjct: 26 LAPGNPVPSENEIIEKYQVSNTTARKALHELEKEGWVTRIKGKG 69 >gi|188585365|ref|YP_001916910.1| transcriptional regulator, GntR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350052|gb|ACB84322.1| transcriptional regulator, GntR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 138 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 19 IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A+ I+ + K + L G + +VRGR Sbjct: 29 LKPDEKVPSVRELAQTLTINPNTIQKAYKDLETEGFIYSVRGRG 72 >gi|94497022|ref|ZP_01303595.1| transcriptional regulator, ArsR family, ArsR1 [Sphingomonas sp. SKA58] gi|294010409|ref|YP_003543869.1| ArsR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|94423394|gb|EAT08422.1| transcriptional regulator, ArsR family, ArsR1 [Sphingomonas sp. SKA58] gi|292673739|dbj|BAI95257.1| ArsR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 139 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ H ++A+A + + + L L +AG+V + R Sbjct: 48 AFRLLV---RHEPEGLPAGEVAKALDVPQNTMSVHLATLARAGLVTSER 93 >gi|70606992|ref|YP_255862.1| transcriptional regulator Lrs14-like protein [Sulfolobus acidocaldarius DSM 639] gi|68567640|gb|AAY80569.1| transcriptional regulator Lrs14-like protein [Sulfolobus acidocaldarius DSM 639] Length = 123 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62 L++ +++D I ++AE +S+ + K L L G++E + GR+G Sbjct: 32 LIFRLLYSDTKLNIEELAEEFKVSKALISKSLSELANKGLIEREKVSNEGRKG 84 >gi|300935458|ref|ZP_07150453.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300459340|gb|EFK22833.1| conserved hypothetical protein [Escherichia coli MS 21-1] Length = 372 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A +N+ QIAE +S+ + ++ L K G++ T R Sbjct: 12 IAEYNNG-LTYKQIAEKYGMSKRNVERLGAKLAKRGLISTRRAPG 55 >gi|228951835|ref|ZP_04113933.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807758|gb|EEM54279.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 126 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|229016709|ref|ZP_04173641.1| Transcriptional regulator, GntR [Bacillus cereus AH1273] gi|229022915|ref|ZP_04179434.1| Transcriptional regulator, GntR [Bacillus cereus AH1272] gi|228738356|gb|EEL88833.1| Transcriptional regulator, GntR [Bacillus cereus AH1272] gi|228744563|gb|EEL94633.1| Transcriptional regulator, GntR [Bacillus cereus AH1273] Length = 126 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|110679644|ref|YP_682651.1| phosphonates metabolism transcriptional regulator PhnF, putative [Roseobacter denitrificans OCh 114] gi|109455760|gb|ABG31965.1| phosphonates metabolism transcriptional regulator PhnF, putative [Roseobacter denitrificans OCh 114] Length = 222 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D + +AE ++ + + LV G+V T RG G + I V+ Sbjct: 13 GDKLPTEAALAERFGVNRHTVRHGISALVAEGLVRTRRGA--GAFVAATPTDYPIGKRVR 70 >gi|42780546|ref|NP_977793.1| GntR family transcriptional regulator [Bacillus cereus ATCC 10987] gi|42736466|gb|AAS40401.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987] Length = 126 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|72163340|ref|YP_290997.1| GntR family transcriptional regulator [Thermobifida fusca YX] gi|71917072|gb|AAZ56974.1| transcriptional regulator, GntR family [Thermobifida fusca YX] Length = 259 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 A + P+ + + E +S + K + L AG+V T +G+ G RP Sbjct: 30 LAPGEEIPSEAA-LMERYGVSSGTVRKAVAELRTAGLVVTYQGK-GSFVKSRPP 81 >gi|38232748|ref|NP_938515.1| hypothetical protein DIP0119 [Corynebacterium diphtheriae NCTC 13129] gi|38199006|emb|CAE48623.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 579 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 + + P ++IAE+ + + +IL+ L +AG Sbjct: 525 LSSGSPISAAEIAESIGMPRPEITEILRNLRRAG 558 >gi|148257904|ref|YP_001242489.1| hypothetical protein BBta_6686 [Bradyrhizobium sp. BTAi1] gi|146410077|gb|ABQ38583.1| hypothetical protein BBta_6686 [Bradyrhizobium sp. BTAi1] Length = 327 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +AEAC +S +++ + L AGI V RG GG RL Sbjct: 13 LQAKGQVTAPALAEACEVSVRTIYRDIDALAAAGIPVYAERGAEGGFRL 61 >gi|117926787|ref|YP_867404.1| filamentation induced by cAMP protein Fic [Magnetococcus sp. MC-1] gi|117610543|gb|ABK45998.1| filamentation induced by cAMP protein Fic [Magnetococcus sp. MC-1] Length = 369 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRR 61 L+ + +++L Y H I IA ++ L K L LV+ G +V GR Sbjct: 306 LSALPEISVQILEYAREHG--RVTIGDIATLTGVNRNTLKKHLSQLVEKGHLVLHGSGRG 363 Query: 62 GGVRLC 67 L Sbjct: 364 AWYALA 369 >gi|308067307|ref|YP_003868912.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305856586|gb|ADM68374.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 317 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 LM + + ++AE +S + + L L + G+ + T G GG R Sbjct: 7 ALMRI-LDSRKKYTARELAERFGVSVRTIQRDLDYLQQTGLPLYTEMGPHGGYR 59 >gi|283833305|ref|ZP_06353046.1| regulatory protein [Citrobacter youngae ATCC 29220] gi|291070943|gb|EFE09052.1| regulatory protein [Citrobacter youngae ATCC 29220] Length = 241 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +A+ +S + + + L L ++ TVRGR GG Sbjct: 43 TDLAKMMGVSHITIREALNTLRANNLIHTVRGRNGG 78 >gi|254519950|ref|ZP_05132006.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913699|gb|EEH98900.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 252 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 5/79 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--ADQITIL 76 + D R+ ++E +SE + K L L + G ++ GG L R + T Sbjct: 12 LKRDGKVRVKDLSEKFNVSEGMIRKDLSKLEQHG---NIKRTYGGAILERKIIHNDNTTS 68 Query: 77 DVVKATEESFFVAECFASH 95 ++ EE +A Sbjct: 69 RIISNIEEKEKIARLVMDE 87 >gi|261419861|ref|YP_003253543.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319766676|ref|YP_004132177.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376318|gb|ACX79061.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC61] gi|317111542|gb|ADU94034.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC52] Length = 125 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 21/49 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ +D + +A+ I+ + K + L + G + ++ G+ Sbjct: 24 IVRELWQPHDQLPSVRTMAKQLMINPNTIQKAYRELERDGWIYSIPGKG 72 >gi|163746398|ref|ZP_02153756.1| transcriptional regulator, GntR family, putative [Oceanibulbus indolifex HEL-45] gi|161380283|gb|EDQ04694.1| transcriptional regulator, GntR family, putative [Oceanibulbus indolifex HEL-45] Length = 257 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +++AE +S + + L+ L ++ T RG GG Sbjct: 31 DQRLPSEAELAEQFEVSRPTVREALKRLAAQSLIRTQRGATGG 73 >gi|118468406|ref|YP_888758.1| ArsR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169693|gb|ABK70589.1| transcriptional regulator, ArsR family protein [Mycobacterium smegmatis str. MC2 155] Length = 114 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68 +R+ + + + ++ +A + + + + L+ L +AG+V + R GR RL Sbjct: 38 LRIAIVLQLQQSQRC-VHELVDALDVPQPLVSQHLRILKQAGVVSSERAGREVLYRLVDH 96 Query: 69 PADQITILDVVKATEE 84 I + + A+E+ Sbjct: 97 HLAHIVVDAIAHASED 112 >gi|145595458|ref|YP_001159755.1| hypothetical protein Strop_2939 [Salinispora tropica CNB-440] gi|145304795|gb|ABP55377.1| transcriptional regulator [Salinispora tropica CNB-440] Length = 238 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ D I++I+ + L LV AG++ R G Sbjct: 32 ILELTRAADGGLTIAEISARTGLHPSTARSHLDRLVNAGLLVKARSSGG 80 >gi|91779399|ref|YP_554607.1| IclR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692059|gb|ABE35257.1| transcriptional regulator, IclR family [Burkholderia xenovorans LB400] Length = 250 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 L+ +++D P ++ IA+ + + L ++L L G+V G++ + Q Sbjct: 13 ALLEHLVNSDGPVSLADIAQDVALPKASLHRMLASLEAGGLVIREPGQKNAYVIGPRLAQ 72 Query: 73 ITIL 76 + + Sbjct: 73 LALG 76 >gi|327189567|gb|EGE56720.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 279 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 13/74 (17%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69 R + + H D + QI+EA +S L ++ G+V ++ G G RL R Sbjct: 6 RAIWFIESHFDSDLSLEQISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59 Query: 70 -----ADQITILDV 78 TIL+V Sbjct: 60 VPALVGSSATILEV 73 >gi|323705081|ref|ZP_08116657.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC [Thermoanaerobacterium xylanolyticum LX-11] gi|323535507|gb|EGB25282.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC [Thermoanaerobacterium xylanolyticum LX-11] Length = 953 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 23/80 (28%) Query: 34 CCISELFLFKILQPLVKAGIVETVRG------------------RRGGVRLCRPADQITI 75 S KI++ L K G + + G +GG + R A IT+ Sbjct: 688 YRTSPHHKLKIVRALRKKGYIVAMTGDGINDAPAVKEANIGIAMGKGGTDVTRNASDITL 747 Query: 76 LD-----VVKATEESFFVAE 90 D +V A +E + E Sbjct: 748 ADDNFTTIVMAIKEGRGINE 767 >gi|323693744|ref|ZP_08107941.1| hypothetical protein HMPREF9475_02804 [Clostridium symbiosum WAL-14673] gi|323502195|gb|EGB18060.1| hypothetical protein HMPREF9475_02804 [Clostridium symbiosum WAL-14673] Length = 326 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69 +R+L + +I E +S ++K+++ L G ++E VR + G RL Sbjct: 6 LRML----KEAEGYISGQEICEKFNVSRTAVWKVIKQLETEGYLIEAVRNK--GYRLKMA 59 Query: 70 ADQITILDV 78 D ++ ++ Sbjct: 60 GDILSRAEI 68 >gi|323484888|ref|ZP_08090243.1| hypothetical protein HMPREF9474_01994 [Clostridium symbiosum WAL-14163] gi|323401769|gb|EGA94112.1| hypothetical protein HMPREF9474_01994 [Clostridium symbiosum WAL-14163] Length = 326 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69 +R+L + +I E +S ++K+++ L G ++E VR + G RL Sbjct: 6 LRML----KEAEGYISGQEICEKFNVSRTAVWKVIKQLETEGYLIEAVRNK--GYRLKMA 59 Query: 70 ADQITILDV 78 D ++ ++ Sbjct: 60 GDILSRAEI 68 >gi|295096758|emb|CBK85848.1| transcriptional regulator, GntR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 473 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A++ P ++A A +S + L L + G +E+ G Sbjct: 34 ALRLLILDGRLALNT-RPPGERELAAALSVSRTTISSALAHLREEGYLESRHGSG 87 >gi|282899504|ref|ZP_06307469.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505] gi|281195611|gb|EFA70543.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505] Length = 718 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+H + + +IA + + +I + L K GI + L + T+ D Sbjct: 562 AVHPESYPLVEKIAGDLQVPLNQVTQIAERLKKTGIKK---------YLTDAIGEPTLRD 612 Query: 78 VVKATEES 85 +++ E+ Sbjct: 613 ILRELEKP 620 >gi|251800075|ref|YP_003014806.1| hypothetical protein Pjdr2_6117 [Paenibacillus sp. JDR-2] gi|247547701|gb|ACT04720.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2] Length = 314 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R++ + ++ ++ ++A+ +S+ + + LQ L + G+ + + G GG ++ R Sbjct: 6 RLMELMMTVNRKRRFKVQELADEFGVSKRTILRDLQELSELGVPLYSEVGPHGGYQVLRE 65 >gi|114761179|ref|ZP_01441094.1| transcriptional regulator, ArsR familyy protein [Pelagibaca bermudensis HTCC2601] gi|114545427|gb|EAU48429.1| transcriptional regulator, ArsR familyy protein [Roseovarius sp. HTCC2601] Length = 112 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 12/95 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+ +I I L L L +AG+V + R Sbjct: 19 LRIFRLLVQRGPGGTPAMEIGRLLDIKPSTLSGHLAALKRAGLVSSER----------QH 68 Query: 71 DQITILDVVKATEE--SFFVAECFASHKIDCPLVG 103 +I + A F + +C + C +G Sbjct: 69 REIQYAPRLDAVNGLVRFLLEDCCGGDEGACSGIG 103 >gi|326800139|ref|YP_004317958.1| regulatory protein GntR HTH [Sphingobacterium sp. 21] gi|326550903|gb|ADZ79288.1| regulatory protein GntR HTH [Sphingobacterium sp. 21] Length = 239 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +IA + +S + + L L G++ET + R G+ L P D++ + E+ Sbjct: 51 EIAASLGVSRNIVREALSRLKALGLIETKKKR--GMVLAEP-------DILGSFEKVLDP 101 >gi|319949883|ref|ZP_08023890.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea P4] gi|319436454|gb|EFV91567.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea P4] Length = 95 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 T G+ L + +S +AEA I+ + L+ L + G V R Sbjct: 17 TRLGL--LAHMHHAGPGVATVSDLAEAVGITRNAASQALRILREQGWVSATR 66 >gi|312199288|ref|YP_004019349.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311230624|gb|ADP83479.1| GntR domain protein [Frankia sp. EuI1c] Length = 274 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 18/102 (17%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-- 69 R+L A Q+ E +S + + L+ L G+V RG GG + RP Sbjct: 25 RILSSTAGDAYRLPTQEQLVEEFGVSYPSVREALRILETEGLVTVRRGNVGGGEVHRPDS 84 Query: 70 ------------ADQITILDV---VKATEESFFVAECFASHK 96 A+++T+ D+ ++ E AEC Sbjct: 85 ASSAYHLGLVLQAERVTLGDLAGGLRLFE-PLCAAECARRPD 125 >gi|239934204|ref|ZP_04691157.1| GntR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291442648|ref|ZP_06582038.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345543|gb|EFE72499.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 130 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L ++ + +R + D + +A+ ++ + K + L G+V G Sbjct: 17 QLVQQVRHALR--LGLLKEGDRLPTVKDVAKQMAVNPNTVLKAYRELEHDGLVAARPGVG 74 >gi|239928934|ref|ZP_04685887.1| GntR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291437263|ref|ZP_06576653.1| gntR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291340158|gb|EFE67114.1| gntR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 21 NDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + P + +A+ ++ + + L L +G+VE + GR R Sbjct: 28 SGQPLPSEEALAKQFGVTRPTVRQGLSELRASGLVEAIMGRG---TFARSP 75 >gi|238922019|ref|YP_002935533.1| ArsR family transcriptional regulator [Eubacterium eligens ATCC 27750] gi|238873691|gb|ACR73399.1| ArsR family transcriptional regulator [Eubacterium eligens ATCC 27750] Length = 89 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + N+ +IAE IS+ L K L L +A +V + + Sbjct: 19 LKLLNEKDLSAGEIAEHFDISKPALTKHLNILREAELVSSEK 60 >gi|254481030|ref|ZP_05094276.1| biotin-(acetyl-CoA-carboxylase) ligase [marine gamma proteobacterium HTCC2148] gi|214038825|gb|EEB79486.1| biotin-(acetyl-CoA-carboxylase) ligase [marine gamma proteobacterium HTCC2148] Length = 313 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 ++A+ +S ++K L L + G+ +E+V+G+ G R+ IT+LD Sbjct: 3 VSGQELADLLGVSRTAVWKQLNKLEELGLEIESVKGK--GYRI---PGGITLLD 51 >gi|169833824|ref|YP_001693500.1| phage replication protein [Streptococcus pneumoniae Hungary19A-6] gi|168996326|gb|ACA36938.1| phage replication protein [Streptococcus pneumoniae Hungary19A-6] gi|321156973|emb|CBW38962.1| Phage protein [Streptococcus phage V22] Length = 113 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRG 62 +++ A H ++ +IA+ ++ + K + +AG + +R G G Sbjct: 1 MMVVLANHPNWQVYPDEIAKRKGVNRKTIDKYFKIFEEAGYLRKIRKKPPGNGG 54 >gi|150396345|ref|YP_001326812.1| ROK family protein [Sinorhizobium medicae WSM419] gi|150027860|gb|ABR59977.1| ROK family protein [Sinorhizobium medicae WSM419] Length = 371 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69 +R+L ++ PN + +A +S L + L+ G +VE G GG L RP Sbjct: 9 LRIL-----RDEGPNSRAILARRSKLSATTLTHVTAQLLADGSVVEEEPGASGG--LGRP 61 Query: 70 ADQITIL 76 A I +L Sbjct: 62 ALAIRLL 68 >gi|107100456|ref|ZP_01364374.1| hypothetical protein PaerPA_01001481 [Pseudomonas aeruginosa PACS2] gi|254245288|ref|ZP_04938610.1| hypothetical protein PA2G_06180 [Pseudomonas aeruginosa 2192] gi|126198666|gb|EAZ62729.1| hypothetical protein PA2G_06180 [Pseudomonas aeruginosa 2192] Length = 266 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 I++L + A H D P ++ IA A IS F IL+ L + Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63 >gi|254239372|ref|ZP_04932695.1| hypothetical protein PACG_05569 [Pseudomonas aeruginosa C3719] gi|126171303|gb|EAZ56814.1| hypothetical protein PACG_05569 [Pseudomonas aeruginosa C3719] Length = 266 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 I++L + A H D P ++ IA A IS F IL+ L + Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63 >gi|119717990|ref|YP_924955.1| regulatory proteins, IclR [Nocardioides sp. JS614] gi|119538651|gb|ABL83268.1| regulatory protein, IclR [Nocardioides sp. JS614] Length = 252 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 28/133 (21%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + L+ + P +A + + +L+ LV G L R Sbjct: 14 ALH-LLDAVGSSTRPMTAKALARQARMPLPTTYHLLRTLVHEGY------------LARD 60 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--AFFDVLT--QY 125 + + D +A + + + LR LN A+ VL + Sbjct: 61 PEGYVLGD--RAI---------TLAGAPTLRPTHTHRILEHLRDELNAPAYLSVLDDGEI 109 Query: 126 SIECLVRNRSSIK 138 + + +R+S + Sbjct: 110 RLADVADSRTSPR 122 >gi|290960548|ref|YP_003491730.1| IclR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260650074|emb|CBG73190.1| putative IclR-family transcriptional regulator [Streptomyces scabiei 87.22] Length = 263 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 A D P R+ ++A+ + ++ +LQ L+ G V T Sbjct: 26 LAARGDRPARLQELADELGVPRSSMYALLQTLIGRGWVRT 65 >gi|171057801|ref|YP_001790150.1| GntR domain-containing protein [Leptothrix cholodnii SP-6] gi|170775246|gb|ACB33385.1| GntR domain protein [Leptothrix cholodnii SP-6] Length = 244 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 13/77 (16%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR----G-----GVRLC 67 A + P + +AE +S + + + L AG+VET G G G R+ Sbjct: 32 LAQGDKLPTEAAIMAE-FAVSRTVVREAISKLQAAGLVETRHGIGTFVLGVGEAPGFRIA 90 Query: 68 RPADQI-TILDVVKATE 83 +Q T+ DV+ E Sbjct: 91 --PEQYNTLRDVIAVLE 105 >gi|220912501|ref|YP_002487810.1| GntR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859379|gb|ACL39721.1| transcriptional regulator, GntR family [Arthrobacter chlorophenolicus A6] Length = 288 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 12 RVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R ++ A+ + + +S + + L L G++ RGR Sbjct: 37 RQIVDLALPPGSSLPTEEELQRQFGVSRSVVRQSLAGLSDLGLIRRQRGRG 87 >gi|168233010|ref|ZP_02658068.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237694|ref|ZP_02662752.1| putative regulatory protein, GntR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194469484|ref|ZP_03075468.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736476|ref|YP_002116991.1| putative regulatory protein GntR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194455848|gb|EDX44687.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711978|gb|ACF91199.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289428|gb|EDY28793.1| putative regulatory protein, GntR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205332827|gb|EDZ19591.1| putative regulatory protein, GntR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 240 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A A +S + + + L+ AGI+ + RG Sbjct: 38 KEVARAYNVSLIVVKQAWSELINAGIISSQRGSG 71 >gi|162149592|ref|YP_001604053.1| ArsR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209544823|ref|YP_002277052.1| ArsR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161788169|emb|CAP57774.1| putative transcriptional regulator ArsR [Gluconacetobacter diazotrophicus PAl 5] gi|209532500|gb|ACI52437.1| transcriptional regulator, ArsR family [Gluconacetobacter diazotrophicus PAl 5] Length = 142 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LM ++ + + +I I + L + L L ++G+V T R R Sbjct: 27 LMILSLLLAGEHTVGEIETRTGIGQPALSQQLAELRRSGLVTTRRAAR 74 >gi|117165128|emb|CAJ88682.1| putative marR-family regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 157 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 G+R ++ +H P + ++A A IS F+ +++ +VE+V Sbjct: 47 GVRAVLAL-LHRGGPMTVPRMARAQAISRQFVQRMVNEAAAQDLVESV 93 >gi|15613686|ref|NP_241989.1| hypothetical protein BH1123 [Bacillus halodurans C-125] gi|10173739|dbj|BAB04842.1| BH1123 [Bacillus halodurans C-125] Length = 526 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 V++Y H + IA+ IS +L +I + Sbjct: 429 VMIYIEKHLAENITLQDIADELYISRNYLGQIFKK 463 >gi|323490538|ref|ZP_08095744.1| AraC family transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323395804|gb|EGA88644.1| AraC family transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 261 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 +V++Y + + +IA+ IS L +I + AGI Sbjct: 150 KVVIYINDEVERDLSVEEIAKHFNISTSHLSRIFRE--HAGI 189 >gi|307321366|ref|ZP_07600765.1| transcriptional regulator, GntR family [Sinorhizobium meliloti AK83] gi|306893011|gb|EFN23798.1| transcriptional regulator, GntR family [Sinorhizobium meliloti AK83] Length = 257 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R ++ A+++ P ++ A +S + + + ++ L G ++T G+ Sbjct: 29 LRGMIERRELAVNDKLP-SERELVAAYGVSRITVRQAIKELENLGYLQTRPGKG 81 >gi|300784632|ref|YP_003764923.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794146|gb|ADJ44521.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 262 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + P ++A+ +S L + + LV+ G++ VRG+ Sbjct: 36 LPPGAPIPSERELAQRYGVSRLTVRSAIGKLVEEGLLARVRGKG 79 >gi|298247895|ref|ZP_06971700.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer DSM 44963] gi|297550554|gb|EFH84420.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer DSM 44963] Length = 147 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 7/54 (12%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPA 70 D P + +I E + + + K L+ L +AGIVE R +L R Sbjct: 52 RDGPLTVGEITERLGLQQPQVSKHLKVLSEAGIVEVQPQANRRI---YKLRREP 102 >gi|297157038|gb|ADI06750.1| transcriptional regulator, ArsR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 +RVL + P S++ E S+ + L L KAG++ T R GR+ RL Sbjct: 26 LRVLALTHVSQHGPCPFSELVEVTGQSQAQVSNHLAVLRKAGLLVTERQGRQSLYRL 82 >gi|296159032|ref|ZP_06841859.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gi|295890593|gb|EFG70384.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 230 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 2 HLTKRTDYG---IRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + RTDY RVL+ +I +IAE +S + + + L K G+V Sbjct: 7 KIQARTDYVDEVYRVLLDAISEGSIAPGTRIVQEEIAEQLAVSRSPVLQAFRLLKKDGLV 66 Query: 55 ETVRGRR 61 E GR Sbjct: 67 EDAPGRG 73 >gi|320009443|gb|ADW04293.1| transcriptional regulator, GntR family [Streptomyces flavogriseus ATCC 33331] Length = 309 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + ++A +S + + L L K ++ T +G G + D+ Sbjct: 34 GERLATQEELASRFGVSRATVSQALAILRKEELIVTRQGS--GSYVASEPDE 83 >gi|254492253|ref|ZP_05105427.1| Ribonuclease BN-like family [Methylophaga thiooxidans DMS010] gi|224462578|gb|EEF78853.1| Ribonuclease BN-like family [Methylophaga thiooxydans DMS010] Length = 449 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 17/129 (13%) Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 G+ ++ A +N P I Q+ E ++ + +L L G++ + G Sbjct: 328 GLWLMTVIAKRFCNNQPPLTIQQLEEQTGLTNNAVQDLLSNLESGGLLVELAGDETAYVP 387 Query: 67 CRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 + I + ++ E S FV + + ++L+ +A VL Sbjct: 388 AQDIASIRVAAIMHCLRTAEENSHFVVKSLVDED----------VNALLQNISDAQAKVL 437 Query: 123 TQYSIECLV 131 ++ L Sbjct: 438 GGMTLRDLA 446 >gi|218893025|ref|YP_002441894.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773253|emb|CAW29065.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 266 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 I++L + A H D P ++ IA A IS F IL+ L + Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63 >gi|118592788|ref|ZP_01550177.1| probable transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118434558|gb|EAV41210.1| probable transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 267 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 12/84 (14%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +++ + +R+L ++ + QIA+ + + +I+ L+ +V G Sbjct: 32 ISRAAEI-LRIL----KKDNSGLSLGQIADRVHLPRSTVQRIVNALIAERLVMASA-AEG 85 Query: 63 GVRLC------RPADQITILDVVK 80 G+RL A +I + ++V+ Sbjct: 86 GLRLGSEIQSLAAAGRINMAELVR 109 >gi|49082854|gb|AAT50827.1| PA1015 [synthetic construct] Length = 267 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 I++L + A H D P ++ IA A IS F IL+ L + Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63 >gi|15596212|ref|NP_249706.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116054438|ref|YP_792256.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|9946926|gb|AAG04404.1|AE004534_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115589659|gb|ABJ15674.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 266 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 I++L + A H D P ++ IA A IS F IL+ L + Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63 >gi|309810472|ref|ZP_07704293.1| transcriptional regulator, ArsR family [Dermacoccus sp. Ellin185] gi|308435567|gb|EFP59378.1| transcriptional regulator, ArsR family [Dermacoccus sp. Ellin185] Length = 315 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L + P R + IA A IS L L K G+V T R Sbjct: 255 RILDHL----RVPARTTDIASALDISPATASHHLHILNKTGLVITQR 297 >gi|297559689|ref|YP_003678663.1| IclR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844137|gb|ADH66157.1| transcriptional regulator, IclR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 265 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L+ +SQ+A++ + + +I++ LV G V + RR L I Sbjct: 31 LLEIMAEAGGETSLSQLADSSGLPLPTIHRIIRTLVGNGYVRQLPSRR--YALG--PRLI 86 Query: 74 TILD 77 + D Sbjct: 87 GLGD 90 >gi|296390627|ref|ZP_06880102.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 266 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 I++L + A H D P ++ IA A IS F IL+ L + Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63 >gi|296188009|ref|ZP_06856401.1| HTH domain protein [Clostridium carboxidivorans P7] gi|296047135|gb|EFG86577.1| HTH domain protein [Clostridium carboxidivorans P7] Length = 320 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++ QI+E I+ +++ + L +G+ + + G GG L Sbjct: 14 LNSGAKITAKQISERLEINIRSVYRYMDALCASGVPIISEPGHNGGYSL 62 >gi|227487476|ref|ZP_03917792.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092700|gb|EEI28012.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 197 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L + + P + ++ E +S+ + L+ L + G+++ VR Sbjct: 126 LRLLSQLSAESCGPVSVGELTETSGLSQPTVSHHLKRLTETGLLDKVR 173 >gi|239827981|ref|YP_002950605.1| GntR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808274|gb|ACS25339.1| transcriptional regulator, GntR family [Geobacillus sp. WCH70] Length = 125 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + + L + GIVET RG+ Sbjct: 31 GDKLPSVREMAVETGVNPNTIQRTYSELERMGIVETRRGQG 71 >gi|83593052|ref|YP_426804.1| ArsR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575966|gb|ABC22517.1| transcriptional regulator, ArsR family [Rhodospirillum rubrum ATCC 11170] Length = 122 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+++ CA+ + + E I + L + L L AG+VET R Sbjct: 44 LRLMLVCALVEGE-YGVGALEERLGIGQPALSQHLGVLRAAGLVETRR 90 >gi|329924778|ref|ZP_08279767.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] gi|328940443|gb|EGG36766.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] Length = 300 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQITILDV 78 I +A+ IS + K ++ L AGI+ T V G+ G +I+IL V Sbjct: 33 MNIKDLAQELQISSPIVTKHIKKLEDAGIIRTEKVPGKSG-------QQKISILKV 81 >gi|323246658|gb|EGA30632.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 409 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|320120438|gb|EFE27604.2| transcriptional regulator, DeoR family [Filifactor alocis ATCC 35896] Length = 314 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y S++A+ +S +++ + L +GI + ++G+ GG+ + Sbjct: 22 FRILYYI--LEKGKVTASELADKFEVSVRTIYRDIDSLSSSGIPIYALKGKGGGIEIAED 79 >gi|313105958|ref|ZP_07792220.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310878722|gb|EFQ37316.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 271 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 I++L + A H D P ++ IA A IS F IL+ L + Sbjct: 26 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 68 >gi|297530328|ref|YP_003671603.1| IclR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297253580|gb|ADI27026.1| transcriptional regulator, IclR family [Geobacillus sp. C56-T3] Length = 253 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L ++ ++ I+ I+E IS+ ++LQ L G V+ Sbjct: 16 ALRLLQLFSM-DETELSITDISERLNISKSAAHRLLQTLKSEGFVK 60 >gi|213622594|ref|ZP_03375377.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 542 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|261405963|ref|YP_003242204.1| ArsR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261282426|gb|ACX64397.1| transcriptional regulator, ArsR family [Paenibacillus sp. Y412MC10] Length = 300 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQITILDV 78 I +A+ IS + K ++ L AGI+ T V G+ G +I+IL V Sbjct: 33 MNIKDLAQELQISSPIVTKHIKKLEDAGIIRTEKVPGKSG-------QQKISILKV 81 >gi|145593619|ref|YP_001157916.1| helix-turn-helix, type 11 domain-containing protein [Salinispora tropica CNB-440] gi|145302956|gb|ABP53538.1| Helix-turn-helix, type 11 domain protein [Salinispora tropica CNB-440] Length = 320 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 +++A +S + + L G V G GG RL P Sbjct: 22 TSAELAGRLEVSTRTVRADIARLRSLGYPVHARPGVAGGYRLVAGTAMPP 71 >gi|29828599|ref|NP_823233.1| hypothetical protein SAV_2057 [Streptomyces avermitilis MA-4680] gi|29605703|dbj|BAC69768.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 109 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVR------LCRPA 70 AI D RI IA C ++E + KI+ L + G + T +GR R L PA Sbjct: 23 AIAEDPTVRIRDIAAHCRLTERAVQKIISDLEQGGYLTHTRQGRSNTYRIQPGTFLRHPA 82 Query: 71 DQ-ITILDVVKAT 82 D T+ D++ Sbjct: 83 DNGSTVADLLSLL 95 >gi|307699716|ref|ZP_07636772.1| transcriptional regulator, ArsR family [Mobiluncus mulieris FB024-16] gi|307615078|gb|EFN94291.1| transcriptional regulator, ArsR family [Mobiluncus mulieris FB024-16] Length = 304 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 21/35 (60%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++ P +++A+A +S+ L + L L AG+++ Sbjct: 29 SNGPQTATELAKALYLSKAVLSRHLSMLRHAGLIK 63 >gi|256397734|ref|YP_003119298.1| hypothetical protein Caci_8641 [Catenulispora acidiphila DSM 44928] gi|256363960|gb|ACU77457.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila DSM 44928] Length = 320 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++AE ++ + ++ L + G VE G GG RL Sbjct: 25 ELAERLGVTTRTVRNDVERLRELGYPVEARPGVAGGYRLG 64 >gi|284030168|ref|YP_003380099.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283809461|gb|ADB31300.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 333 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++AE +S + + ++ L AG+ V T RGR GG L Sbjct: 19 LSARELAERLEVSTRTVMRDMEALSAAGVPVYTERGRNGGCVL 61 >gi|154500855|ref|ZP_02038893.1| hypothetical protein BACCAP_04540 [Bacteroides capillosus ATCC 29799] gi|150270355|gb|EDM97681.1| hypothetical protein BACCAP_04540 [Bacteroides capillosus ATCC 29799] Length = 302 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 ++AE +S + + ++ L +AGI + T +G GG+ Sbjct: 17 EKVTAPELAEQFEVSRRTIQRDIESLCRAGIPITTAQGAGGGI 59 >gi|160901785|ref|YP_001567366.1| regulatory protein GntR HTH [Petrotoga mobilis SJ95] gi|160359429|gb|ABX31043.1| regulatory protein GntR HTH [Petrotoga mobilis SJ95] Length = 353 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 18/42 (42%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +++AE +S + K + L K G + T RG Sbjct: 24 KGDRILSENKLAEFFSVSRQTVRKAIYDLEKEGYLVTRRGSG 65 >gi|289643533|ref|ZP_06475650.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca glomerata] gi|289506659|gb|EFD27641.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca glomerata] Length = 255 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +RVL++ P R S +A +++ + LQ L + G+VE R Sbjct: 86 LRVLVHLHAGPPPPARTSALARELDVADPTVSDALQALRRKGLVERER 133 >gi|291296819|ref|YP_003508217.1| biotin/acetyl-CoA-carboxylase ligase [Meiothermus ruber DSM 1279] gi|290471778|gb|ADD29197.1| biotin/acetyl-CoA-carboxylase ligase [Meiothermus ruber DSM 1279] Length = 307 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +A A +S ++K + L KAG VET +GR G RL Sbjct: 10 ERFQSGEALASALGVSRTAVWKQVVELRKAGYPVETQKGR--GYRLA 54 >gi|262200873|ref|YP_003272081.1| hypothetical protein Gbro_0875 [Gordonia bronchialis DSM 43247] gi|262084220|gb|ACY20188.1| Helix-turn-helix type 11 domain protein [Gordonia bronchialis DSM 43247] Length = 328 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + VLM H+ +Q+A+ +SE + + + L +GI V RGR GG L Sbjct: 7 LAVLMLLKTHS--RMTAAQLADELDVSERTVLRDIDALSLSGIPVYAERGRHGGFAL 61 >gi|227825019|ref|ZP_03989851.1| transcriptional regulator [Acidaminococcus sp. D21] gi|226905518|gb|EEH91436.1| transcriptional regulator [Acidaminococcus sp. D21] Length = 261 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 7/91 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC-- 67 +R+L A ++ I+ A + + +++IL+ L AG +E + G RL Sbjct: 25 AVRILELYAAQRRESLSLTGISRALSLHKTTVYRILRTLQHAGWIEQSE-KSGQYRLGTG 83 Query: 68 --RPADQITILDVVK--ATEESFFVAECFAS 94 A +++ + VK TE +++CF Sbjct: 84 ILMVASAVSVHNTVKDLITEALNDLSDCFNE 114 >gi|254424859|ref|ZP_05038577.1| phosphonates metabolism transcriptional regulator PhnF [Synechococcus sp. PCC 7335] gi|196192348|gb|EDX87312.1| phosphonates metabolism transcriptional regulator PhnF [Synechococcus sp. PCC 7335] Length = 251 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D SQ+++ ++ + + + L + G++ + RG Sbjct: 28 GDRLPPESQLSQQFSVNRNTIRQAISLLKQEGLLRSQRGSG 68 >gi|91772790|ref|YP_565482.1| iron dependent repressor [Methanococcoides burtonii DSM 6242] gi|91711805|gb|ABE51732.1| iron dependent repressor [Methanococcoides burtonii DSM 6242] Length = 163 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 4 TKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 T+RT DY +++L I R+ ++E ++ + + + L + G + + G Sbjct: 3 TERTEDY-LKILDSI-IKKKGYARVKDVSEIMGLNPSSVTGMFKKLNREGYINYE--KYG 58 Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGL-TSVLRKALNAF 118 V L ++I +ATEE + V + F +C + + + L+ F Sbjct: 59 AVTLTPKGEEIA-----RATEEKYDVLQEFLQILGVDTKTADEDACRIEHGLTHETLDVF 113 Query: 119 FDVLT 123 + Sbjct: 114 TKFIE 118 >gi|324998376|ref|ZP_08119488.1| LysR family transcriptional regulator [Pseudonocardia sp. P1] Length = 305 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 13/73 (17%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL---VKAGIVETVRGRR---- 61 Y +R+L D + +AE +S + + L L ++G++E GRR Sbjct: 5 YRLRMLTLL----DGLGTVRAVAETMHVSPSTVSQQLGVLESETRSGLLE-RTGRRVRLT 59 Query: 62 -GGVRLCRPADQI 73 G+ L R +I Sbjct: 60 PAGLVLARRGREI 72 >gi|302528943|ref|ZP_07281285.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437838|gb|EFL09654.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 185 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Query: 17 CAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETVR 58 A+ D P I+Q+AE I S + ++ L +AGIV VR Sbjct: 41 LAVLRDGPATITQVAEQLGIAKGSSSY---HMRVLERAGIVHVVR 82 >gi|229095300|ref|ZP_04226292.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-29] gi|228688159|gb|EEL42045.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-29] Length = 324 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 32 TAQEIADEFNISVRTVHRYILDLGDMGLPIYAEQGRNGGYK 72 >gi|229114249|ref|ZP_04243670.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-3] gi|228669269|gb|EEL24690.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-3] Length = 313 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYILDLGDMGLPIYAEQGRNGGYK 61 >gi|192292440|ref|YP_001993045.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192286189|gb|ACF02570.1| transcriptional regulator, ArsR family [Rhodopseudomonas palustris TIE-1] Length = 118 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Query: 3 LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + R+L+ +A+A + + L L +AG+V + R Sbjct: 13 LSQETRLAVFRLLV---RREPDGVAAGDLAKAVGVPANTMSVHLGVLSRAGLVTSER 66 >gi|167032893|ref|YP_001668124.1| GntR domain-containing protein [Pseudomonas putida GB-1] gi|166859381|gb|ABY97788.1| GntR domain protein [Pseudomonas putida GB-1] Length = 234 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 20/105 (19%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI------------TI 75 ++AE IS L + + L G+V ++ G+ L AD I ++ Sbjct: 34 RELAEQLGISRPSLREAVTVLETLGLVRSMPGKG---VLVLDADAISHEAGVDTSAAASL 90 Query: 76 LDVVKA---TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117 DV++ E F+ A + +R+AL A Sbjct: 91 ADVLELRYTLEP--FIVGLVAQSANSQDIGQLRLTLMDMREALEA 133 >gi|313897202|ref|ZP_07830746.1| transcriptional regulator, GntR family [Clostridium sp. HGF2] gi|312957923|gb|EFR39547.1| transcriptional regulator, GntR family [Clostridium sp. HGF2] Length = 488 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A +S + K L L + G V T+ G+ Sbjct: 283 KQLAAIYNVSVSTIRKALTELSQRGFVRTINGKG 316 >gi|296331873|ref|ZP_06874338.1| transcriptional regulator (GntR family) protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673485|ref|YP_003865157.1| GntR family transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150951|gb|EFG91835.1| transcriptional regulator (GntR family) protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411729|gb|ADM36848.1| transcriptional regulator (GntR family) protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 238 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++ S + K L L + G ++ +RG+ G V L R Sbjct: 33 ELTAQYDTSRETVRKALHMLAQNGYIQKIRGK-GSVVLNRE 72 >gi|237731341|ref|ZP_04561822.1| GntR-family transcriptional regulator [Citrobacter sp. 30_2] gi|226906880|gb|EEH92798.1| GntR-family transcriptional regulator [Citrobacter sp. 30_2] Length = 241 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +A+ +S + + + L L ++ TVRGR GG Sbjct: 43 TDLAKMMGVSHITIREALNTLRANNLIHTVRGRNGG 78 >gi|167568407|ref|ZP_02361281.1| transcriptional regulator [Burkholderia oklahomensis C6786] Length = 523 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 R L+Y H P + Q+A+ +S L + + Sbjct: 423 RALLYLGEHYANPISMEQLAQHAHVSPSHLSYLFR 457 >gi|167561189|ref|ZP_02354105.1| transcriptional regulator [Burkholderia oklahomensis EO147] Length = 523 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 R L+Y H P + Q+A+ +S L + + Sbjct: 423 RALLYLGEHYANPISMEQLAQHAHVSPSHLSYLFR 457 >gi|126735825|ref|ZP_01751570.1| transcriptional regulator, GntR family, putative [Roseobacter sp. CCS2] gi|126715012|gb|EBA11878.1| transcriptional regulator, GntR family, putative [Roseobacter sp. CCS2] Length = 244 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++A+ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELADQFEVSRPTVREALKRLAAQSLIRTQRGATGG 73 >gi|45358762|ref|NP_988319.1| phosphate transporter PhoU [Methanococcus maripaludis S2] gi|45047628|emb|CAF30755.1| phosphate transport system regulatory protein-related [Methanococcus maripaludis S2] Length = 284 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52 ++ P IA+ +S ++ K+L+PLV G Sbjct: 18 DEEPETQDDIADRLGVSRRYVAKLLKPLVDGG 49 >gi|322372343|ref|ZP_08046879.1| transcriptional regulator, MarR family [Streptococcus sp. C150] gi|321277385|gb|EFX54454.1| transcriptional regulator, MarR family [Streptococcus sp. C150] Length = 147 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + Y + + D I I + CIS+ +++ + K G VE Sbjct: 40 AVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGFVE 82 >gi|253577280|ref|ZP_04854598.1| DRTGG domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843284|gb|EES71314.1| DRTGG domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 444 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI----TILD 77 + ++A+A +SE ++ ++ GIV T R G VR+ + I T D Sbjct: 24 GTKISVRKLAKALGVSEGTAYRAVKEAENLGIVITKE-RIGTVRVEKKPRNISDQLTFGD 82 Query: 78 VVKATEE 84 VV+ E Sbjct: 83 VVEIVEG 89 >gi|228477912|ref|ZP_04062526.1| transcriptional regulator [Streptococcus salivarius SK126] gi|228250402|gb|EEK09642.1| transcriptional regulator [Streptococcus salivarius SK126] Length = 147 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + Y + + D I I + CIS+ +++ + K G VE Sbjct: 40 AVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGFVE 82 >gi|221198437|ref|ZP_03571483.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] gi|221208886|ref|ZP_03581883.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221171169|gb|EEE03619.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221182369|gb|EEE14770.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] Length = 314 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 64 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 120 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 121 LE--LGNLVKA 129 >gi|159905857|ref|YP_001549519.1| phosphate uptake regulator PhoU [Methanococcus maripaludis C6] gi|159887350|gb|ABX02287.1| phosphate uptake regulator, PhoU [Methanococcus maripaludis C6] Length = 284 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52 ++ P IA+ +S ++ K+L+PLV G Sbjct: 18 DEEPETQDDIADRLNVSRRYVAKLLKPLVDGG 49 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281500|gb|ABR89910.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 16 YCAIHNDYPNRISQIAE-----ACCISELFLFKILQPLVK---AGIVETVRGRRGGVRLC 67 Y A P ++AE + + + ++ + + A ++ET RG G L Sbjct: 160 YLAHQAGRPVSAGELAEHLYGDSEGVDTNAIEALVLRMRRKFGADLIETRRGF--GYMLS 217 >gi|150402372|ref|YP_001329666.1| phosphate uptake regulator PhoU [Methanococcus maripaludis C7] gi|150033402|gb|ABR65515.1| phosphate uptake regulator, PhoU [Methanococcus maripaludis C7] Length = 284 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52 ++ P IA+ +S ++ K+L+PLV G Sbjct: 18 DEEPETQDDIADRLNVSRRYVAKLLKPLVDGG 49 >gi|325003042|ref|ZP_08124154.1| MarR family transcriptional regulator [Pseudonocardia sp. P1] Length = 161 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL + H P R ++IA A + + + LVKAG+VE Sbjct: 52 HVLAHL--HFGGPQRATEIAAAFHSDPSTISRQVSALVKAGLVE 93 >gi|300172534|ref|YP_003771699.1| biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase [Leuconostoc gasicomitatum LMG 18811] gi|299886912|emb|CBL90880.1| Biotin operon repressor / Biotin--[acetyl-CoA-carboxylase] synthetase [Leuconostoc gasicomitatum LMG 18811] Length = 326 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 17/86 (19%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR----- 65 R+L + A H +A+ IS ++K+++ L + G +++ G R Sbjct: 6 RILHFFAEHEGEYLSGETLAKNLDISRAAVWKVIKKLTEQGHTIDSQ--HHVGYRYQSGK 63 Query: 66 ---------LCRPADQITILDVVKAT 82 L QI + DV+ +T Sbjct: 64 VLSVPMIRQLAHSDWQIKLFDVIDST 89 >gi|294617131|ref|ZP_06696791.1| RepE protein [Enterococcus faecium E1679] gi|291596608|gb|EFF27841.1| RepE protein [Enterococcus faecium E1679] Length = 497 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67 + ++ E I E L K+L+ L GR GG+ L Sbjct: 393 STKKELREELKIPERSLDKVLKQLKNENKIYYRVRSGRNGGITLA 437 >gi|220912622|ref|YP_002487931.1| hypothetical protein Achl_1867 [Arthrobacter chlorophenolicus A6] gi|219859500|gb|ACL39842.1| Helix-turn-helix type 11 domain protein [Arthrobacter chlorophenolicus A6] Length = 232 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 11 IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + L + + ++A +S + + L L +G V + G GG L Sbjct: 7 LHALSEMLLRSGKRGVSAERLAGEFEVSVRTIKRDLDALENSGAPVWSRPGPGGGYGLA 65 >gi|196044224|ref|ZP_03111460.1| HTH domain family [Bacillus cereus 03BB108] gi|196024863|gb|EDX63534.1| HTH domain family [Bacillus cereus 03BB108] Length = 317 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ +H RIS++AE + E + + AGI +ET +GR GG L Sbjct: 10 MIEL-LHARGKMRISELAELLEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63 >gi|116250905|ref|YP_766743.1| HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255553|emb|CAK06630.1| putative HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 115 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C + + + ++ E + + L + L L +GIVET R Sbjct: 39 RLMIVCTLVEGE-HSVGELEEKIDVHQPHLSQHLTVLRGSGIVETRR 84 >gi|73537549|ref|YP_297916.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72120886|gb|AAZ63072.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 247 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 D S++ +S + + L L +G+VET G G L RPA+ Sbjct: 41 GDKLPTESEVMATFGVSRTVVREALSRLQASGLVETRHGI-GTFVLARPAET 91 >gi|331266805|ref|YP_004326435.1| transcriptional repressor CodY [Streptococcus oralis Uo5] gi|326683477|emb|CBZ01095.1| transcriptional repressor CodY [Streptococcus oralis Uo5] Length = 262 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79 N+ S IA+ I+ + L+ L AGI+E+ G +G ++ I D+ Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254 Query: 80 KAT 82 + Sbjct: 255 EEV 257 >gi|325478232|gb|EGC81351.1| putative HTH-type transcriptional repressor CzrA [Anaerococcus prevotii ACS-065-V-Col13] Length = 100 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVK 80 D + QIA + +S+ + L+ L ++ +V++ R G+ L +I I ++ Sbjct: 37 DGEVSVGQIATSLDMSQSAISHQLKYLKESNLVKSKRNGKSMLYYLADDHVKIIIKTGLE 96 Query: 81 ATEE 84 EE Sbjct: 97 HIEE 100 >gi|315612764|ref|ZP_07887675.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis ATCC 49296] gi|322374709|ref|ZP_08049223.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sp. C300] gi|315314874|gb|EFU62915.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis ATCC 49296] gi|321280209|gb|EFX57248.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sp. C300] Length = 262 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79 N+ S IA+ I+ + L+ L AGI+E+ G +G ++ I D+ Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254 Query: 80 KAT 82 + Sbjct: 255 EEV 257 >gi|92118294|ref|YP_578023.1| hypothetical protein Nham_2789 [Nitrobacter hamburgensis X14] gi|91801188|gb|ABE63563.1| hypothetical protein Nham_2789 [Nitrobacter hamburgensis X14] Length = 157 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVK---AGIVETVRGRRGGVRLCRPADQITI 75 H IS +A A +S +K L AG+V RG +GG ++ AD + Sbjct: 53 RHQIDRLPISDVASAFGVSRPTFYKAQSALADHGLAGLVPRQRGPKGGHKI--SADVLAY 110 Query: 76 LDVVKATEESFFVAECFA 93 +D ++AT V +C Sbjct: 111 IDQLRATRPGLTVPQCVD 128 >gi|145223674|ref|YP_001134352.1| transcriptional regulator, TrmB [Mycobacterium gilvum PYR-GCK] gi|145216160|gb|ABP45564.1| transcriptional regulator, IclR family [Mycobacterium gilvum PYR-GCK] Length = 267 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRG 62 + D ++VL A H +IA + + + +++ L G VE + RG+ Sbjct: 20 QSVDRALQVLEIVAAHGQAGVT--EIAAELGVHKSTVSRLVAVLEARGYVEQVSERGK-- 75 Query: 63 GVRLC 67 RL Sbjct: 76 -YRLG 79 >gi|329957871|ref|ZP_08298346.1| hypothetical protein HMPREF9445_03230 [Bacteroides clarus YIT 12056] gi|328522748|gb|EGF49857.1| hypothetical protein HMPREF9445_03230 [Bacteroides clarus YIT 12056] Length = 123 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LT +T I +L A ++ + + ++ S + ++L+ L I+ + G+ Sbjct: 2 LTIQTQVAITILHSIATSHES-HSLGRL-----FSTNIVSELLEQLEMGKIIRLIPGKEK 55 Query: 63 G----VRLCRPADQITILDVVKATEESFFVA 89 G L RP+ I++LD+++AT E Sbjct: 56 GKITSYELTRPSVNISLLDILEATGEHLNCT 86 >gi|298249630|ref|ZP_06973434.1| transcriptional regulator, MarR family with acetyltransferase activity [Ktedonobacter racemifer DSM 44963] gi|297547634|gb|EFH81501.1| transcriptional regulator, MarR family with acetyltransferase activity [Ktedonobacter racemifer DSM 44963] Length = 308 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 10/77 (12%) Query: 9 YGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRR 61 Y + RV+ A + S + + +L ++L L + G++E VR GR+ Sbjct: 35 YSLTESRVIFDLA--QGHALTASDLCRELGLDAGYLSRLLNRLEQQGLLEKVRSESDGRQ 92 Query: 62 GGVRLCRPADQI-TILD 77 +RL Q ++LD Sbjct: 93 RLLRLTAEGKQAFSVLD 109 >gi|271968708|ref|YP_003342904.1| glc operon transcriptional activator [Streptosporangium roseum DSM 43021] gi|270511883|gb|ACZ90161.1| glc operon transcriptional activator [Streptosporangium roseum DSM 43021] Length = 247 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 11/102 (10%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 T R + V + + +IA A + E+ + L L + G++E RGR GG Sbjct: 26 TVRARIAMAVDLGLLQPGERLPPTGEIARALDVGEMTARRALVALCEEGMLERRRGRTGG 85 Query: 64 VRLC-RPA----DQI-----TILDVVKATEESFFVAECFASH 95 + RPA +I DV + ++ + EC +H Sbjct: 86 TLVAPRPAGGRVREIAAYQAAAGDVHRLIDQRL-LLECGTAH 126 >gi|254386170|ref|ZP_05001482.1| deoR-family transcriptional regulator [Streptomyces sp. Mg1] gi|194345027|gb|EDX25993.1| deoR-family transcriptional regulator [Streptomyces sp. Mg1] Length = 326 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70 S++A +S + + + L + G VE G GG RL P Sbjct: 24 SELAARLRVSARTIRRDIDRLRELGYPVEATLGADGGYRLVAGAAMPP 71 >gi|126650777|ref|ZP_01722993.1| transcriptional regulator, MarR family protein [Bacillus sp. B14905] gi|126592442|gb|EAZ86460.1| transcriptional regulator, MarR family protein [Bacillus sp. B14905] Length = 139 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 22/42 (52%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + P+ IA I + + K++ LV+ G VET+ G+ Sbjct: 42 LKDKGPHSFVDIANFMSIEKPSVTKLVHKLVELGYVETMAGK 83 >gi|159041368|ref|YP_001540620.1| hypothetical protein Cmaq_0795 [Caldivirga maquilingensis IC-167] gi|157920203|gb|ABW01630.1| hypothetical protein Cmaq_0795 [Caldivirga maquilingensis IC-167] Length = 297 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV----RGRRGGVRLCRPADQIT 74 I+ + I E +S+ + L L GI+E + RGRR +L IT Sbjct: 34 INGKEYVTFNDIVENTGLSQRAVRGALSELKAKGIIEVILDVSRGRRYLYKLI--PSNIT 91 Query: 75 ILDVVKATEESFFVAE 90 I++ + E ++ + Sbjct: 92 IVE--EQVESGLYLVD 105 >gi|108800412|ref|YP_640609.1| ArsR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869541|ref|YP_939493.1| ArsR family transcriptional regulator [Mycobacterium sp. KMS] gi|126436035|ref|YP_001071726.1| ArsR family transcriptional regulator [Mycobacterium sp. JLS] gi|108770831|gb|ABG09553.1| transcriptional regulator, ArsR family [Mycobacterium sp. MCS] gi|119695630|gb|ABL92703.1| transcriptional regulator, ArsR family [Mycobacterium sp. KMS] gi|126235835|gb|ABN99235.1| transcriptional regulator, ArsR family [Mycobacterium sp. JLS] Length = 120 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 +R+ + + + + ++ +A + + + + L+ L +AG+V + R GR RL Sbjct: 44 VRIAIVLHLQHSARC-VHELVDALGVPQPLVSQHLRILKQAGVVASERSGREVLYRL 99 >gi|55377094|ref|YP_134944.1| transcription regulator [Haloarcula marismortui ATCC 43049] gi|55229819|gb|AAV45238.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 356 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 9 YGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 YG+ Y A+ P +AE +S+ +++ I L G V Sbjct: 19 YGLSETEAETYLAVVEKGPATARTVAETAGVSKSYVYDICDSLAVDGFV 67 >gi|152966315|ref|YP_001362099.1| MarR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360832|gb|ABS03835.1| transcriptional regulator, MarR family [Kineococcus radiotolerans SRS30216] Length = 191 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ H+ P I +A+ ++ + + + + AG+ + G Sbjct: 61 KALIRL--HHRGPLSIKALAQQVGVTHSAMSQTVTAMRHAGLTNSTAG 106 >gi|315444000|ref|YP_004076879.1| IclR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315262303|gb|ADT99044.1| transcriptional regulator, IclR family [Mycobacterium sp. Spyr1] Length = 267 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRG 62 + D ++VL A H +IA + + + +++ L G VE + RG+ Sbjct: 20 QSVDRALQVLEIVAAHGQAGVT--EIAAELGVHKSTVSRLVAVLEARGYVEQVSERGK-- 75 Query: 63 GVRLC 67 RL Sbjct: 76 -YRLG 79 >gi|311029714|ref|ZP_07707804.1| trehalose operon repressor [Bacillus sp. m3-13] Length = 235 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + E S + K L L + G ++ VRG+ G + L R Sbjct: 33 DLMELFDTSRETVRKALNQLAQNGYIQKVRGK-GSIVLARD 72 >gi|307326889|ref|ZP_07606080.1| GntR domain protein [Streptomyces violaceusniger Tu 4113] gi|306887425|gb|EFN18420.1| GntR domain protein [Streptomyces violaceusniger Tu 4113] Length = 236 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+R D ++A+ IS + + + L G+VE +G GG+ L R Sbjct: 30 GLRA-------GDRLPTERELAQRLGISRASVKQAIVVLEVQGLVEVRQG--GGMCLLRD 80 >gi|304313816|ref|YP_003848963.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302587275|gb|ADL57650.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 248 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%) Query: 7 TDY---GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 TDY ++ S +AEA I ++++L+ L G VE RG+ Sbjct: 15 TDYQAAAYTAMVSLVSAG-----ASDVAEASGIPRSRIYEVLRQLSDRGFVEVERGK 66 >gi|300118620|ref|ZP_07056358.1| hypothetical protein BCSJ1_14990 [Bacillus cereus SJ1] gi|298724009|gb|EFI64713.1| hypothetical protein BCSJ1_14990 [Bacillus cereus SJ1] Length = 314 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ +H RIS++AE + E + + AGI +ET +GR GG L Sbjct: 10 MIEL-LHARGKMRISELAEILEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63 >gi|323528383|ref|YP_004230535.1| regulatory protein ArsR [Burkholderia sp. CCGE1001] gi|323385385|gb|ADX57475.1| regulatory protein ArsR [Burkholderia sp. CCGE1001] Length = 111 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R ++ ++ + I E +S+ + K L+ L +AG VE+ Sbjct: 14 RAILSLLASSER--SVGDIEEQLNLSQPSVSKHLRVLREAGFVESR 57 >gi|320012718|gb|ADW07568.1| transcriptional regulator, ArsR family [Streptomyces flavogriseus ATCC 33331] Length = 131 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++++ R Sbjct: 47 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 94 >gi|256958863|ref|ZP_05563034.1| DRTGG domain-containing protein [Enterococcus faecalis DS5] gi|256949359|gb|EEU65991.1| DRTGG domain-containing protein [Enterococcus faecalis DS5] Length = 439 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 26/129 (20%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA++ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRTIKDAENIGLVPTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131 VV+ E L GS GL VL K A +T S+ +V Sbjct: 77 VVRIIEGDV--------------LGGSSGLDKVLNKFVIGAMTETAMTRYITPGSL-MIV 121 Query: 132 RNRSSIKKI 140 NR ++K+ Sbjct: 122 GNRQGVQKL 130 >gi|163744158|ref|ZP_02151518.1| transcriptional regulator, GntR family protein [Oceanibulbus indolifex HEL-45] gi|161380976|gb|EDQ05385.1| transcriptional regulator, GntR family protein [Oceanibulbus indolifex HEL-45] Length = 237 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 D +Q+A ++ + + + + + G+ + RG GV + + I Sbjct: 24 APGDRLPTEAQLAARFGVNRHTVRRAISNMNEGGLTYSRRGA--GVFVAQRPTDYAIGKR 81 Query: 79 VK 80 V+ Sbjct: 82 VR 83 >gi|315645508|ref|ZP_07898632.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] gi|315278986|gb|EFU42296.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] Length = 261 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + I VL+ N ++AE +S +++ + L +AGI + +G Sbjct: 1 MKIDRL--LAITVLLL----NRGRLSAKELAERFEVSSKTIYRDMDTLCRAGIPIAAHQG 54 Query: 60 RRGGV 64 GG Sbjct: 55 ISGGF 59 >gi|312904720|ref|ZP_07763870.1| primase 1 [Enterococcus faecalis TX0635] gi|310631943|gb|EFQ15226.1| primase 1 [Enterococcus faecalis TX0635] Length = 439 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 A ++A + + L KIL L + V + RGR GG+ + Sbjct: 362 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 414 >gi|307270915|ref|ZP_07552201.1| primase 1 [Enterococcus faecalis TX4248] gi|307273541|ref|ZP_07554782.1| primase 1 [Enterococcus faecalis TX0855] gi|312952158|ref|ZP_07771038.1| primase 1 [Enterococcus faecalis TX0102] gi|314949853|ref|ZP_07853162.1| primase 1 [Enterococcus faecium TX0082] gi|306509781|gb|EFM78810.1| primase 1 [Enterococcus faecalis TX0855] gi|306512742|gb|EFM81388.1| primase 1 [Enterococcus faecalis TX4248] gi|310629878|gb|EFQ13161.1| primase 1 [Enterococcus faecalis TX0102] gi|313643797|gb|EFS08377.1| primase 1 [Enterococcus faecium TX0082] gi|315575425|gb|EFU87616.1| primase 1 [Enterococcus faecalis TX0309B] gi|315578521|gb|EFU90712.1| primase 1 [Enterococcus faecalis TX0630] gi|315581769|gb|EFU93960.1| primase 1 [Enterococcus faecalis TX0309A] Length = 474 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 A ++A + + L KIL L + V + RGR GG+ + Sbjct: 362 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 414 >gi|260596822|ref|YP_003209393.1| hypothetical protein CTU_10300 [Cronobacter turicensis z3032] gi|260215999|emb|CBA28664.1| Uncharacterized protein ybaE [Cronobacter turicensis z3032] Length = 564 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 I+++A C SE + +L L + G + ++ RG+RG Sbjct: 12 VTIAELAARCFCSERHVRTLLGQLQQQGWLRWRAQSGRGKRG 53 >gi|257080240|ref|ZP_05574601.1| plasmid replication protein [Enterococcus faecalis JH1] gi|256988270|gb|EEU75572.1| plasmid replication protein [Enterococcus faecalis JH1] Length = 324 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 A ++A + + L KIL L + V + RGR GG+ + Sbjct: 212 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 264 >gi|255976324|ref|ZP_05426910.1| replication protein [Enterococcus faecalis T2] gi|255969196|gb|EET99818.1| replication protein [Enterococcus faecalis T2] Length = 496 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 A ++A + + L KIL L + V + RGR GG+ + Sbjct: 384 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 436 >gi|255525724|ref|ZP_05392655.1| Helix-turn-helix type 11 domain protein [Clostridium carboxidivorans P7] gi|255510547|gb|EET86856.1| Helix-turn-helix type 11 domain protein [Clostridium carboxidivorans P7] Length = 314 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++ QI+E I+ +++ + L +G+ + + G GG L Sbjct: 8 LNSGAKITAKQISERLEINIRSVYRYMDALCASGVPIISEPGHNGGYSL 56 >gi|239816444|ref|YP_002945354.1| GntR family transcriptional regulator [Variovorax paradoxus S110] gi|239803021|gb|ACS20088.1| transcriptional regulator, GntR family [Variovorax paradoxus S110] Length = 234 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A+ IA+ +S + + L+ L K G V GR Sbjct: 30 ALAPGERITQEDIAQRLSVSRQPVLQALRLLKKDGFVHDAPGRG 73 >gi|241206401|ref|YP_002977497.1| AraC family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860291|gb|ACS57958.1| transcriptional regulator, AraC family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 279 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69 R + + H + + +I+EA +S L ++ G+V ++ G G RL R Sbjct: 6 RAIWFIESHFESDISLEEISEAAGLSRYHLSRVF------GLVTGYSISGYIRGRRLSRA 59 >gi|190410504|ref|YP_001966128.1| RepR [Enterococcus faecium] gi|78522974|gb|ABB46227.1| RepR [Enterococcus faecium] Length = 497 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 A ++A + + L KIL L + V + RGR GG+ + Sbjct: 385 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 437 >gi|116253919|ref|YP_769757.1| AraC family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258567|emb|CAK09671.1| putative AraC family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 279 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69 R + + H + + +I+EA +S L ++ G+V ++ G G RL R Sbjct: 6 RAIWFIESHFESDISLEEISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59 >gi|110668876|ref|YP_658687.1| transcriptional regulator [Haloquadratum walsbyi DSM 16790] gi|109626623|emb|CAJ53089.1| transcriptional regulator (probable sugar-specific) [Haloquadratum walsbyi DSM 16790] Length = 285 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 10/81 (12%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LT+ + ++ L+ + ++EA I + ++ +L L G ++ + GR Sbjct: 16 LTEYEEQALQSLIEL-----GRSTAPSLSEATGIPKARVYGVLDDLSDEGFIKIIPGRPK 70 Query: 63 GVRLCRPADQITILDVVKATE 83 +P + +LD +A E Sbjct: 71 EYE-TKPPAE--LLD--QAIE 86 >gi|69245260|ref|ZP_00603338.1| similar to plasmid replication protein [Enterococcus faecium DO] gi|115534803|ref|YP_783885.1| putative Rep protein [Enterococcus faecalis] gi|121633851|ref|YP_976089.1| replication protein [Enterococcus faecium] gi|124112017|ref|YP_001019046.1| putative replication protein [Enterococcus faecium] gi|190606521|ref|YP_001974806.1| putative replication protein [Enterococcus faecium] gi|197103137|ref|YP_002128419.1| putative replication protein [Enterococcus faecium] gi|257088773|ref|ZP_05583134.1| replication protein repS [Enterococcus faecalis CH188] gi|258616892|ref|ZP_05714662.1| putative replication protein [Enterococcus faecium DO] gi|261206739|ref|ZP_05921432.1| replication protein [Enterococcus faecium TC 6] gi|289567285|ref|ZP_06447665.1| repR protein [Enterococcus faecium D344SRF] gi|293559716|ref|ZP_06676241.1| RepR [Enterococcus faecium E1162] gi|294623212|ref|ZP_06702088.1| RepR [Enterococcus faecium U0317] gi|12956986|emb|CAC29157.1| putative Rep protein [Enterococcus faecalis] gi|68195935|gb|EAN10369.1| similar to plasmid replication protein [Enterococcus faecium DO] gi|121490910|emb|CAL36546.1| replication protein [Enterococcus faecium] gi|124012119|emb|CAL90952.1| putative replication protein [Enterococcus faecium] gi|190350291|emb|CAP62642.1| putative replication protein [Enterococcus faecium] gi|196158959|emb|CAP70035.1| putative replication protein [Enterococcus faecium] gi|256997585|gb|EEU84105.1| replication protein repS [Enterococcus faecalis CH188] gi|260079040|gb|EEW66738.1| replication protein [Enterococcus faecium TC 6] gi|281336166|gb|ADA62715.1| similar to plasmid replication protein [Enterococcus faecium] gi|289160924|gb|EFD08844.1| repR protein [Enterococcus faecium D344SRF] gi|291597379|gb|EFF28554.1| RepR [Enterococcus faecium U0317] gi|291606325|gb|EFF35734.1| RepR [Enterococcus faecium E1162] Length = 497 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67 A ++A + + L KIL L + V + RGR GG+ + Sbjct: 385 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 437 >gi|325571506|ref|ZP_08147006.1| transcription regulator [Enterococcus casseliflavus ATCC 12755] gi|325155982|gb|EGC68178.1| transcription regulator [Enterococcus casseliflavus ATCC 12755] Length = 238 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 19 IHNDYPNRISQIA--EACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ND +++A E S + + +Q L + G+V +V+GR Sbjct: 20 LYNDTMVLPTEMALIERFGTSRNTVRRAIQLLNEDGLVYSVKGRG 64 >gi|296242237|ref|YP_003649724.1| hypothetical protein Tagg_0497 [Thermosphaera aggregans DSM 11486] gi|296094821|gb|ADG90772.1| hypothetical protein Tagg_0497 [Thermosphaera aggregans DSM 11486] Length = 243 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCR 68 +L Y ++ + I I+++ +S L + KIL L VE + G G L Sbjct: 11 ILEYLNMYPG--SGIKDISDSTGLSPLIVRKILYKLKNDNYVE----KSGNGYVLTE 61 >gi|271963352|ref|YP_003337548.1| hydroxyneurosporene-O-methyltransferase [Streptosporangium roseum DSM 43021] gi|270506527|gb|ACZ84805.1| hydroxyneurosporene-O-methyltransferase [Streptosporangium roseum DSM 43021] Length = 334 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 4/77 (5%) Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ + CA H D P + ++A C L ++L+ L G+V T Sbjct: 15 VSRFAALATMAELGCADHLKDGPLSVEELAVRCGADPAALGRVLRQLAAMGMVATA--AA 72 Query: 62 GGVRLCRPADQITILDV 78 G L + DV Sbjct: 73 GTYELTEAGATLR-GDV 88 >gi|225574904|ref|ZP_03783514.1| hypothetical protein RUMHYD_02982 [Blautia hydrogenotrophica DSM 10507] gi|225037872|gb|EEG48118.1| hypothetical protein RUMHYD_02982 [Blautia hydrogenotrophica DSM 10507] Length = 123 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L + G+V + R Sbjct: 31 GDRLPSVRDLASEAAVNPNTMQKALSELERNGLVYSQR 68 >gi|213162327|ref|ZP_03348037.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 441 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|217966792|ref|YP_002352298.1| DeoR family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217335891|gb|ACK41684.1| transcriptional regulator, DeoR family [Dictyoglomus turgidum DSM 6724] Length = 254 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 R+L + +IA+ ISE+ + + L L K G+++ VRG Sbjct: 10 RILQLI--REKGYLTVQEIAKELSISEITVRRDLNFLEKQGLIKRVRG 55 >gi|306831574|ref|ZP_07464732.1| MarR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426359|gb|EFM29473.1| MarR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 162 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +MY + D I I + IS+ +++ + K G ++ V Sbjct: 56 AVMYLRDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGFIQVV 100 >gi|300918172|ref|ZP_07134779.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 115-1] gi|300414623|gb|EFJ97933.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 115-1] Length = 566 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 IS++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTISELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|288905491|ref|YP_003430713.1| transcriptional regulator, MarR family [Streptococcus gallolyticus UCN34] gi|325978480|ref|YP_004288196.1| MarR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732217|emb|CBI13782.1| putative transcriptional regulator, MarR family [Streptococcus gallolyticus UCN34] gi|325178408|emb|CBZ48452.1| MarR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 146 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +MY + D I I + IS+ +++ + K G ++ V Sbjct: 40 AVMYLRDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGFIQVV 84 >gi|282877816|ref|ZP_06286628.1| ROK family protein [Prevotella buccalis ATCC 35310] gi|281300027|gb|EFA92384.1| ROK family protein [Prevotella buccalis ATCC 35310] Length = 400 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +L Y +H+ I +I++ IS KI+ L+ G V + +G+R Sbjct: 20 ILKYLMLHDG--CTIPEISKHIGISVPTTTKIITNLMSKGFVVS-KGKR 65 >gi|170767713|ref|ZP_02902166.1| bacterial extracellular solute-binding protein, family 5 [Escherichia albertii TW07627] gi|170123201|gb|EDS92132.1| bacterial extracellular solute-binding protein, family 5 [Escherichia albertii TW07627] Length = 566 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQDAGWLEWRAQSGRGKRGQLRFLVTPESLRNTMIEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|139437281|ref|ZP_01771441.1| Hypothetical protein COLAER_00420 [Collinsella aerofaciens ATCC 25986] gi|133776928|gb|EBA40748.1| Hypothetical protein COLAER_00420 [Collinsella aerofaciens ATCC 25986] Length = 98 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L + ++AE IS+ L L L AG+V R Sbjct: 22 RILELL---REGNCTAGELAEHFDISKPSLSHHLATLKNAGLVTDER 65 >gi|86751164|ref|YP_487660.1| GntR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574192|gb|ABD08749.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris HaA2] Length = 244 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 13/105 (12%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ P +++A +S + + L+ LV +G+VE+ G + +P Sbjct: 52 ALPPGAPLDETELAHRFKVSRTPVREALRQLVTSGLVESR--PHHGAVVAKP-------- 101 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 + E + E A + C + +T + R+ L A D L Sbjct: 102 ---SFERLSGMFEAMAELEAMCAGFAAERMTPLERRDLEAIHDEL 143 >gi|283834979|ref|ZP_06354720.1| Uxu operon transcriptional regulator [Citrobacter youngae ATCC 29220] gi|291069257|gb|EFE07366.1| Uxu operon transcriptional regulator [Citrobacter youngae ATCC 29220] Length = 257 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + +IAE ++ + + L L G+VE RG I +LD Sbjct: 28 LPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136 + + C G L R+ L + Q + E +V+ R + Sbjct: 76 ------NADAQTIDGNDVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIVKMRQA 128 Query: 137 IK 138 ++ Sbjct: 129 LQ 130 >gi|262372355|ref|ZP_06065634.1| transcriptional repressor for L-lactate utilization [Acinetobacter junii SH205] gi|262312380|gb|EEY93465.1| transcriptional repressor for L-lactate utilization [Acinetobacter junii SH205] Length = 247 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M ++ + +R+L+ + Q+ E +S L + +Q L+ AGI+++ Sbjct: 1 MKVSDKVVQRLRLLIEKNNVQVGERLPAERQLCEQLGVSRSSLREAIQQLITAGIIQSKA 60 Query: 59 GRR 61 G Sbjct: 61 GAG 63 >gi|320013185|gb|ADW08033.1| regulatory protein ArsR [Streptomyces flavogriseus ATCC 33331] Length = 335 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R + A+ + Q+AE IS + + L AG+V ++R Sbjct: 268 RAAVLEALATPAGHNTKQLAERLAISPASASEHVAALRAAGLVTSLR 314 >gi|146340629|ref|YP_001205677.1| AsnC/Lrp family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193435|emb|CAL77451.1| putative transcriptional regulatory protein, AsnC/Lrp family; putative leucine-responsive regulatory protein [Bradyrhizobium sp. ORS278] Length = 161 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L D RI+++A+ IS+ + ++ L +G+++ +R Sbjct: 13 RILAEL--QADGRIRINELADRVGISQPNCLRRVRALRGSGVIKAIR 57 >gi|39936618|ref|NP_948894.1| ArsR family transcriptional regulator ArsR2 [Rhodopseudomonas palustris CGA009] gi|39650474|emb|CAE28997.1| transcriptional regulator, ArsR family, ArsR2 [Rhodopseudomonas palustris CGA009] Length = 118 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Query: 3 LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + R+L+ +A+A + + L L +AG+V + R Sbjct: 13 LSQETRLAVFRLLV---RREPDGVAAGDLAKAVGVPANTMSVHLGVLSRAGLVTSER 66 >gi|122894068|ref|YP_001004131.1| transcriptional repressor of TraB [Streptomyces ghanaensis] gi|3135877|emb|CAA56754.1| traR [Streptomyces ghanaensis] Length = 246 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A IS+ K + L G+VE++ G Sbjct: 30 GDRIPSVRDLATEWSISQATAMKAVAALRADGLVESITGVG 70 >gi|25010441|ref|NP_734836.1| hypothetical protein gbs0367 [Streptococcus agalactiae NEM316] gi|25010753|ref|NP_735148.1| hypothetical protein gbs0698 [Streptococcus agalactiae NEM316] gi|25011064|ref|NP_735459.1| hypothetical protein gbs1010 [Streptococcus agalactiae NEM316] gi|23094794|emb|CAD46012.1| Unknown [Streptococcus agalactiae NEM316] gi|23095107|emb|CAD46342.1| unknown [Streptococcus agalactiae NEM316] gi|23095463|emb|CAD46669.1| Unknown [Streptococcus agalactiae NEM316] Length = 497 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 13 VLMYCA--IHNDYP---NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVR 65 V+ Y +D P I E I E L K+L+ L GR GG+R Sbjct: 376 VMAYLEGYFQSDDPFIQTTKKAIREELNIPERSLDKVLKALKADNKIFFAVKSGRGGGIR 435 Query: 66 LC 67 L Sbjct: 436 LT 437 >gi|152976607|ref|YP_001376124.1| manganese transport transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189028679|sp|A7GSM1|MNTR_BACCN RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|152025359|gb|ABS23129.1| iron dependent repressor [Bacillus cytotoxicus NVH 391-98] Length = 142 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTAKGKKIGER 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|325277396|ref|ZP_08143016.1| GntR domain-containing protein [Pseudomonas sp. TJI-51] gi|324097469|gb|EGB95695.1| GntR domain-containing protein [Pseudomonas sp. TJI-51] Length = 217 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 IR L+ D +AE IS L + L L G+V G+ Sbjct: 3 AIRKLIEAGDYQPGDALPSQRDLAEQLGISRASLREALSSLSALGLVSVQPGKG 56 >gi|300859457|ref|YP_003784440.1| MarR family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300686911|gb|ADK29833.1| MarR-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302207137|gb|ADL11479.1| MarR-family transcriptional regulator [Corynebacterium pseudotuberculosis C231] gi|308277391|gb|ADO27290.1| Putative MarR-family transcriptional regulator [Corynebacterium pseudotuberculosis I19] Length = 176 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + ++ A N P RIS IA+A I L L K GIVE +R Sbjct: 61 LTIMTRLA--NTGPARISHIAQAEGIRMPTASNALHHLEKRGIVERIR 106 >gi|289642042|ref|ZP_06474195.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca glomerata] gi|289508115|gb|EFD29061.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca glomerata] Length = 166 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG---RRGGVRLCRP 69 V+ +H P I+++AE+ + L + + + AG V T+ G R V L Sbjct: 46 VMELLRLHAHGPMTITELAESVGRTHSALSQKVAAMRAAGWVHTITGDDARSKKVTLTDN 105 Query: 70 ADQI 73 A I Sbjct: 106 ARDI 109 >gi|271968960|ref|YP_003343156.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512135|gb|ACZ90413.1| putative transcriptional regulator, ArsR family [Streptosporangium roseum DSM 43021] Length = 322 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L+ A + P +Q+A +S + + L L AG+V R Sbjct: 256 RALL-LA-ELETPASTTQLARRAGLSAAGVSQHLTALRDAGLVTAHR 300 >gi|291301021|ref|YP_003512299.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570241|gb|ADD43206.1| transcriptional regulator, ArsR family [Stackebrandtia nassauensis DSM 44728] Length = 90 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPA 70 D P +++IA + + + L+ L AG+V ET RGR+ RL Sbjct: 8 DGPQPVTEIAAHFDMRRPSVSEHLKALRDAGLVAETKRGRQRFYRLEPEP 57 >gi|220930003|ref|YP_002506912.1| GntR family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000331|gb|ACL76932.1| transcriptional regulator, GntR family [Clostridium cellulolyticum H10] Length = 126 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 21/41 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A+ I+ + K + L GI+ +V+G+ Sbjct: 32 DDKILSVRELAQTLTINPNTIQKAYKDLEAEGIIYSVKGKG 72 >gi|187479194|ref|YP_787219.1| heat-inducible transcription repressor [Bordetella avium 197N] gi|115423781|emb|CAJ50332.1| heat-inducible transcription repressor [Bordetella avium 197N] Length = 334 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 22/46 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ L+ I + P +++ +S + ++ L + G++++ Sbjct: 9 LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIQS 54 >gi|331270226|ref|YP_004396718.1| GntR family transcriptional regulator [Clostridium botulinum BKT015925] gi|329126776|gb|AEB76721.1| transcriptional regulator, GntR family [Clostridium botulinum BKT015925] Length = 242 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D ++ E IS + + +Q L G V G+ Sbjct: 30 QEHDRLPSERELCEKYDISRSTVRQTMQELENNGYVYREHGKG 72 >gi|330501281|ref|YP_004378150.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328915567|gb|AEB56398.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 234 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 8 DYGIRVLMYCAIH-----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +Y ++ + D +AE +S L + L L G+V G+ Sbjct: 11 EYALQAIRRLIEEEGYRPGDALPSQRDLAERLGVSRASLREALSSLSALGLVSVQAGKG 69 >gi|266623860|ref|ZP_06116795.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM 13479] gi|288864330|gb|EFC96628.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM 13479] Length = 284 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 7/46 (15%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 L++ T+Y H D P + ++A+ S +L +I + Sbjct: 171 KLSEITEY-------MKNHYDEPLSLEKVADRFGFSPTYLSRIFKR 209 >gi|254818708|ref|ZP_05223709.1| putative arsenical resistance operon repressor [Mycobacterium intracellulare ATCC 13950] Length = 118 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + +I+ +S+ + L+ L AG+++ R Sbjct: 38 LRLLSLVASHPGGQACVCEISPTFDVSQPTISHHLKTLRSAGLLDCER 85 >gi|253680992|ref|ZP_04861795.1| transcriptional regulator, GntR family [Clostridium botulinum D str. 1873] gi|253562841|gb|EES92287.1| transcriptional regulator, GntR family [Clostridium botulinum D str. 1873] Length = 242 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D ++ E IS + + +Q L G V G+ Sbjct: 30 QEHDRLPSERELCEKYDISRSTVRQTMQELENNGYVYREHGKG 72 >gi|261350680|ref|ZP_05976097.1| conserved hypothetical protein [Methanobrevibacter smithii DSM 2374] gi|288861463|gb|EFC93761.1| conserved hypothetical protein [Methanobrevibacter smithii DSM 2374] Length = 479 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R++ Y A+ ++A+ +S + IL L K ++ + G ++ + Sbjct: 294 RIVTYIAMQKSGGTSNVKLAQMLGVSPNTINNILNVLEKTQLLFPITAYGTGSKIIKKPW 353 Query: 72 QI 73 + Sbjct: 354 EY 355 >gi|257413371|ref|ZP_05591625.1| transcriptional regulator, GntR family [Roseburia intestinalis L1-82] gi|257203749|gb|EEV02034.1| transcriptional regulator, GntR family [Roseburia intestinalis L1-82] Length = 180 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L + G+V + R Sbjct: 89 GDKLPSVRDLAAEAAVNPNTMQKAFTELERTGLVFSQR 126 >gi|223986158|ref|ZP_03636179.1| hypothetical protein HOLDEFILI_03487 [Holdemania filiformis DSM 12042] gi|223961866|gb|EEF66357.1| hypothetical protein HOLDEFILI_03487 [Holdemania filiformis DSM 12042] Length = 305 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + + ++Y + ++A+ +S +++ L L +AGI + RG Sbjct: 1 MQMNRCFE-----IVYLLLER-KKITAQELADRFEVSVRTIYRDLDFLSQAGIPIYARRG 54 Query: 60 RRGGVRL 66 + GG+ L Sbjct: 55 KDGGIEL 61 >gi|326692449|ref|ZP_08229454.1| biotin-(acetyl-CoA carboxylase) ligase [Leuconostoc argentinum KCTC 3773] Length = 312 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 H D IA IS ++K + L +AG +E+ RG G R Sbjct: 14 HADEWVSGETIATDLQISRAAVWKAINKLTEAGFMIESQRGL--GYR 58 >gi|315646339|ref|ZP_07899459.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] gi|315278538|gb|EFU41854.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] Length = 300 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQITILDV 78 I +A+ IS + K ++ L AGI+ T + G+ G +I+IL V Sbjct: 33 MNIKDLAQELQISSPIVTKHIKKLEDAGIIRTEKIPGKSG-------QQKISILKV 81 >gi|315442559|ref|YP_004075438.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|315260862|gb|ADT97603.1| transcriptional regulator [Mycobacterium sp. Spyr1] Length = 302 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 16/123 (13%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 +++L + A +S++A +S+ I+ L +AG + VR RL Sbjct: 18 VQILDFLASRPTERYGVSELARRVGLSKPTCLGIVTSLTEAGYL--VRDPADKTYRLG-- 73 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 IT+ +A +ES V+ H L G T+ L ++ + ++ Sbjct: 74 PSLITLGH--RA-QESMRVSPAARDHLR--RLSARYGATAALSAVVD------DRITLLD 122 Query: 130 LVR 132 LV Sbjct: 123 LVA 125 >gi|306829118|ref|ZP_07462308.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus mitis ATCC 6249] gi|304428204|gb|EFM31294.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus mitis ATCC 6249] Length = 262 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79 N+ S IA+ I+ + L+ L AGI+E+ G +G ++ I D+ Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254 Query: 80 KAT 82 + Sbjct: 255 EEV 257 >gi|314948321|ref|ZP_07851712.1| HTH domain protein [Enterococcus faecium TX0082] gi|281336192|gb|ADA62741.1| conserved hypothetical protein [Enterococcus faecium] gi|313645238|gb|EFS09818.1| HTH domain protein [Enterococcus faecium TX0082] Length = 180 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68 +L+ + +IA+ IS +++ ++ L +AGI + + G+ G L Sbjct: 10 ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65 Query: 69 -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124 P T +V A + C + + S+L+ + L Sbjct: 66 LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122 >gi|195977366|ref|YP_002122610.1| transcriptional regulator MarR family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869747|ref|YP_002745694.1| MarR family regulatory protein [Streptococcus equi subsp. equi 4047] gi|195974071|gb|ACG61597.1| transcriptional regulator MarR family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699151|emb|CAW92367.1| MarR family regulatory protein [Streptococcus equi subsp. equi 4047] Length = 149 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 VL++ H D + I + IS+ +++ + K G + V Sbjct: 37 HVLVFLHCHQDRDIFVKDIEKELQISKSVTSNLVKRMEKNGFIRVV 82 >gi|187934164|ref|YP_001885866.1| YtrA family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722317|gb|ACD23538.1| transcriptional regulator YtrA [Clostridium botulinum B str. Eklund 17B] Length = 132 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +++ I+ + K + L + GI+ET+RG+ Sbjct: 31 EGEKLPSVRELSSILTINPNTISKAYKELEREGIIETLRGKG 72 >gi|154150516|ref|YP_001404134.1| iron dependent repressor [Candidatus Methanoregula boonei 6A8] gi|153999068|gb|ABS55491.1| iron dependent repressor [Methanoregula boonei 6A8] Length = 142 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 3 LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++T DY + ++ ++ Y R IAE I + +++Q L + G V T R + Sbjct: 4 ISRKTEDY-LEAILNISLVKGY-ARTKDIAEELNIQPPSVVEMIQKLSQTGFV-TYR-KY 59 Query: 62 GGVRLCRPADQITILDVVK 80 GV L +I +VVK Sbjct: 60 EGVTLTDNGRKI--AEVVK 76 >gi|187477034|ref|YP_785058.1| GntR family transcriptional regulator [Bordetella avium 197N] gi|115421620|emb|CAJ48130.1| GntR-family transcriptional regulator [Bordetella avium 197N] Length = 244 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---------CRPADQITILDVV 79 +I +S + + L L +AG+VET G G L PA+ +I D++ Sbjct: 45 EIMRQFGVSRTVVREALSRLQEAGLVETRHGV-GTYALQASPGADFRVSPAELASIRDIL 103 Query: 80 KATE 83 A E Sbjct: 104 VALE 107 >gi|119718314|ref|YP_925279.1| IclR family transcriptional regulator [Nocardioides sp. JS614] gi|119538975|gb|ABL83592.1| transcriptional regulator, IclR family [Nocardioides sp. JS614] Length = 269 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +LM+ A +++IAE +S+ + ++L L G+VE Sbjct: 29 ILMHFASTPQTDFGVTEIAEELGLSKAAVHRVLASLRSRGLVE 71 >gi|331696227|ref|YP_004332466.1| ArsR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950916|gb|AEA24613.1| transcriptional regulator, ArsR family [Pseudonocardia dioxanivorans CB1190] Length = 127 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + I+ A ++ + L+ L AG+V + R Sbjct: 39 LRLLSLIAAHEGGEACVCDISGAFALTGPTISHHLKVLRTAGLVSSQR 86 >gi|297180082|gb|ADI16306.1| transcriptional regulator [uncultured bacterium HF0070_11A08] Length = 231 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R Y A + +++A ++ + + L L + G V + +G Sbjct: 14 VRAGHYAA--GEKMPTEAELARRFNVNRHTVRRALGLLRENGFVLSKKGAG 62 >gi|262369025|ref|ZP_06062354.1| ArsR family transcriptional regulator [Acinetobacter johnsonii SH046] gi|262316703|gb|EEY97741.1| ArsR family transcriptional regulator [Acinetobacter johnsonii SH046] Length = 107 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +++L D + +I E+ I + L + L L KA +V T R G++ RL P Sbjct: 35 LKILCVLV---DGEMNVQEIEESTDIHQPTLSQQLTVLRKADMVSTRREGKQIFYRLSDP 91 >gi|254558001|ref|YP_003064418.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300769005|ref|ZP_07078895.1| DeoR family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308182076|ref|YP_003926204.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254046928|gb|ACT63721.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300493417|gb|EFK28595.1| DeoR family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047567|gb|ADO00111.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 255 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 21/41 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + +I+ I++ +S + K + L K G+V+ +RG Sbjct: 14 LRQQGTIKITDISKEISVSRETVRKDIYTLDKQGLVQAIRG 54 >gi|297204172|ref|ZP_06921569.1| MarR-family regulatory protein [Streptomyces sviceus ATCC 29083] gi|197714143|gb|EDY58177.1| MarR-family regulatory protein [Streptomyces sviceus ATCC 29083] Length = 160 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 Y + +Y H ++A+ + L++ K+ + L AG++E R Sbjct: 35 THAQYSLVASLYGMRHGGERPSQRRLADRTGLEPLYVSKLARSLESAGLLERAR 88 >gi|157149694|ref|YP_001450199.1| biotin--protein ligase [Streptococcus gordonii str. Challis substr. CH1] gi|262282523|ref|ZP_06060291.1| biotin-protein ligase [Streptococcus sp. 2_1_36FAA] gi|157074488|gb|ABV09171.1| BirA bifunctional protein [Streptococcus gordonii str. Challis substr. CH1] gi|262261814|gb|EEY80512.1| biotin-protein ligase [Streptococcus sp. 2_1_36FAA] Length = 311 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 L D +IA+ I+ ++K +Q L K GI +E+V+ R G RL Sbjct: 7 LYDILSQADDYVNGEKIAQELGITRTSIWKAIQKLEKEGIQIESVKNR--GYRL 58 >gi|150376126|ref|YP_001312722.1| GntR domain-containing protein [Sinorhizobium medicae WSM419] gi|150030673|gb|ABR62789.1| GntR domain protein [Sinorhizobium medicae WSM419] Length = 233 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A D ++A +S + + L+ L + G++ + RG Sbjct: 28 AYKPDERLPTEHELATEFEVSRPIVREALRRLREQGLIYSRRGAG 72 >gi|89899336|ref|YP_521807.1| hypothetical protein Rfer_0524 [Rhodoferax ferrireducens T118] gi|89344073|gb|ABD68276.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 281 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 16/96 (16%) Query: 15 MYCAIHNDYPNRISQ--IAEA-CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + A D P +A A ISE L L L AG++E RG RL A Sbjct: 12 LMLAT-GDKPMAARDAILAGALFNISENSLRVTLARLSAAGLIEAAE--RGAYRLGPAAT 68 Query: 72 QITILDV---------VKATEESFFVAECFASHKID 98 + +V ++A + S V C A + D Sbjct: 69 DL-AGEVATWRTMESRLRAWQGSHIVVHCGALGRSD 103 >gi|78060594|ref|YP_367169.1| transcriptional regulator-like [Burkholderia sp. 383] gi|77965144|gb|ABB06525.1| transcriptional regulator-like protein [Burkholderia sp. 383] Length = 326 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ + ++M +A+A +SE + + + L AG+ + RG Sbjct: 1 MKASRL----LSIMMML--QARGRMTAPALADALEVSERTILRDIDQLSTAGVPIWGDRG 54 Query: 60 RRGGVRLC 67 R GG +L Sbjct: 55 RNGGFQLS 62 >gi|330995023|ref|ZP_08318942.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter sp. SXCC-1] gi|329757912|gb|EGG74437.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter sp. SXCC-1] Length = 113 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + + H +A + + + L L +AG++ + R Sbjct: 13 LSQSTR--LEIFRLLVRHEPNGLPAGDVARHLDVPQNTISAHLATLTRAGLLTSQR 66 >gi|307727339|ref|YP_003910552.1| regulatory protein ArsR [Burkholderia sp. CCGE1003] gi|307587864|gb|ADN61261.1| regulatory protein ArsR [Burkholderia sp. CCGE1003] Length = 111 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R ++ ++ + I E +S+ + K L+ L +AG VE+ Sbjct: 14 RAILSLLASSER--SVGDIEEQLNLSQPSVSKHLRVLREAGFVESR 57 >gi|257466803|ref|ZP_05631114.1| aminotransferase class-I [Fusobacterium gonidiaformans ATCC 25563] gi|315917951|ref|ZP_07914191.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|313691826|gb|EFS28661.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] Length = 477 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 19/36 (52%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 I QI+ ++ + K+ Q L + G + +++G+ Sbjct: 38 SIRQISIKFQVNLNTVLKVFQTLEEEGYLYSIKGKG 73 >gi|257452831|ref|ZP_05618130.1| aminotransferase class-I [Fusobacterium sp. 3_1_5R] gi|317059372|ref|ZP_07923857.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313685048|gb|EFS21883.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] Length = 477 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 19/36 (52%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 I QI+ ++ + K+ Q L + G + +++G+ Sbjct: 38 SIRQISIKFQVNLNTVLKVFQTLEEEGYLYSIKGKG 73 >gi|269119286|ref|YP_003307463.1| DeoR family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613164|gb|ACZ07532.1| transcriptional regulator, DeoR family [Sebaldella termitidis ATCC 33386] Length = 255 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 13/78 (16%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 V++ ++ + + ++++ ISE + K LQ L K G ++ R G ++L R Sbjct: 9 VILDM-LNKEGKVNVKELSKTFNISESMIRKDLQSLEKNGKLK--RTYGGAIQLER---- 61 Query: 73 ITILDVVKATEESFFVAE 90 T++D EE F + Sbjct: 62 -TLVD-----EEDFIITR 73 >gi|219856296|ref|YP_002473418.1| hypothetical protein CKR_2953 [Clostridium kluyveri NBRC 12016] gi|219570020|dbj|BAH08004.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 329 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 + S+++E + + +++ + L KA I V T +GR GG + + Sbjct: 23 LQYKELTTASELSEMLKVDKKTIYRYINSLNKANIPVHTRKGRYGGFYIDKS 74 >gi|187920423|ref|YP_001889455.1| GntR domain-containing protein [Burkholderia phytofirmans PsJN] gi|187718861|gb|ACD20084.1| GntR domain protein [Burkholderia phytofirmans PsJN] Length = 233 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R + A H Q++E +S + + + L G++ RG Sbjct: 17 ALRAEID-AGHFPAESRLPTEQQLSERLNVSRSVVREAIAQLKSDGVLVARRGAG 70 >gi|153955954|ref|YP_001396719.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348812|gb|EDK35348.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 320 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 + S+++E + + +++ + L KA I V T +GR GG + + Sbjct: 14 LQYKELTTASELSEMLKVDKKTIYRYINSLNKANIPVHTRKGRYGGFYIDKS 65 >gi|150399266|ref|YP_001323033.1| phosphate uptake regulator PhoU [Methanococcus vannielii SB] gi|150011969|gb|ABR54421.1| phosphate uptake regulator, PhoU [Methanococcus vannielii SB] Length = 284 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P IAE +S ++ K+L+PLV G + Sbjct: 18 EEEPETQDDIAEKLNVSRRYVAKLLKPLVDEGAIR 52 >gi|223933439|ref|ZP_03625424.1| GTP-sensing pleiotropic transcriptional repressor CodY [Streptococcus suis 89/1591] gi|223897877|gb|EEF64253.1| GTP-sensing pleiotropic transcriptional repressor CodY [Streptococcus suis 89/1591] Length = 262 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 +L A + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 194 ILGELAGNEGQ-LTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|294812321|ref|ZP_06770964.1| Putative AfsR-like transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294324920|gb|EFG06563.1| Putative AfsR-like transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 1033 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 16/88 (18%) Query: 11 IRVLM-YCAIHNDYPNRISQIAEA-------CCISELFLFKILQPLVKAGIVETVRGRRG 62 +R L+ A+ P + IA + ++ L +A E V G Sbjct: 26 LRALLTVLALRPGRPVTVGLIAAEIWDEEPPEDTPGA-VQALVGRLRRAIGREAVESVAG 84 Query: 63 GVRLCRPADQITI-------LDVVKATE 83 G RL AD + + + V+A E Sbjct: 85 GYRLRADADDVDLHRFDRLAGEGVRAFE 112 >gi|158423710|ref|YP_001525002.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330599|dbj|BAF88084.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 113 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + + +AE +S+ L + L + G+VET R Sbjct: 37 LLVLCQLVEGERSVGDLAEVVGLSQSALSQHLAKMRLQGLVETRR 81 >gi|333023470|ref|ZP_08451534.1| putative transcriptional regulator, ArsR family [Streptomyces sp. Tu6071] gi|332743322|gb|EGJ73763.1| putative transcriptional regulator, ArsR family [Streptomyces sp. Tu6071] Length = 126 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++++ R Sbjct: 40 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 87 >gi|332669850|ref|YP_004452858.1| putative transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338888|gb|AEE45471.1| putative transcriptional regulator [Cellulomonas fimi ATCC 484] Length = 244 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI------VETVRGR 60 L++ + + P + ++A+ + E + LQ LV G V T RGR Sbjct: 19 LLHL-LQSGGPATVGELADRTGLHENTAREHLQRLVVDGFVHREPEVRTTRGR 70 >gi|319936327|ref|ZP_08010743.1| hypothetical protein HMPREF9488_01576 [Coprobacillus sp. 29_1] gi|319808442|gb|EFW04994.1| hypothetical protein HMPREF9488_01576 [Coprobacillus sp. 29_1] Length = 300 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 ++Y + + ++AE +S +++ + L AGI V +G+ GG+ Sbjct: 9 MVYLLLQKGH-MTAPELAEHFEVSVRTIYRDIDILSLAGIPVYATQGKGGGI 59 >gi|307296739|ref|ZP_07576558.1| regulatory protein ArsR [Sphingobium chlorophenolicum L-1] gi|306877868|gb|EFN09093.1| regulatory protein ArsR [Sphingobium chlorophenolicum L-1] Length = 112 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ H ++A+A + + + L L +AG+V + R Sbjct: 21 AFRLLV---RHEPEGLPAGEVAKALDVPQNTMSVHLATLARAGLVTSER 66 >gi|290958818|ref|YP_003490000.1| regulatory protein [Streptomyces scabiei 87.22] gi|260648344|emb|CBG71455.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 345 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 S++A +S + + L ++G++ + R GG+ L Sbjct: 274 TTSEVAARVGLSPATVSHHVAVLRESGLLTSRR--LGGIVL 312 >gi|257880793|ref|ZP_05660446.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883436|ref|ZP_05663089.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257892137|ref|ZP_05671790.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|260558605|ref|ZP_05830795.1| conserved hypothetical protein [Enterococcus faecium C68] gi|257815021|gb|EEV43779.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257819094|gb|EEV46422.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257828497|gb|EEV55123.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|260075343|gb|EEW63655.1| conserved hypothetical protein [Enterococcus faecium C68] Length = 173 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68 +L+ + +IA+ IS +++ ++ L +AGI + + G+ G L Sbjct: 10 ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65 Query: 69 -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124 P T +V A + C + + S+L+ + L Sbjct: 66 LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122 >gi|226306638|ref|YP_002766598.1| hypothetical protein RER_31510 [Rhodococcus erythropolis PR4] gi|226185755|dbj|BAH33859.1| hypothetical protein RER_31510 [Rhodococcus erythropolis PR4] Length = 343 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 4/50 (8%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 + + VLM H + + ++A S + +IL L + G V+ Sbjct: 136 EVAVSVLM----HPERTFAVRELARELGRSPSTVSEILAALRRDGFVDAR 181 >gi|182436829|ref|YP_001824548.1| AraC family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777425|ref|ZP_08236690.1| transcriptional regulator, AraC family [Streptomyces cf. griseus XylebKG-1] gi|178465345|dbj|BAG19865.1| putative AraC-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657758|gb|EGE42604.1| transcriptional regulator, AraC family [Streptomyces cf. griseus XylebKG-1] Length = 321 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG---IVETVRGRRGGVRL 66 +R + +P +++A +S L K LV G + R L Sbjct: 211 ALRAM---HADPAHPWTTAELAVRAGVSRTTLAKRFTELVGEGPVAYLTAWRMTLAADLL 267 Query: 67 CRPADQITILDVVKAT 82 RP ++T+ V + Sbjct: 268 TRP--ELTVAAVARRV 281 >gi|167629558|ref|YP_001680057.1| hypothetical protein HM1_1473 [Heliobacterium modesticaldum Ice1] gi|167592298|gb|ABZ84046.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 237 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGRRGG-VRLCR 68 Y H + + +IA+ I L L + G++E ++ GR G L + Sbjct: 23 YIVNHPNATCTVKEIAQEFSIHPNVARLHLSKLEEIGLLESGWDHQSMPGRPGRVYSLRK 82 Query: 69 PADQITI 75 A IT+ Sbjct: 83 KA--ITL 87 >gi|148252441|ref|YP_001237026.1| CRP/FNR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404614|gb|ABQ33120.1| Putative transcriptional regulator protein, Fnr/CRP family [Bradyrhizobium sp. BTAi1] Length = 234 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGR 60 +AEA S + L ++LQ L G++E RG Sbjct: 178 LAEAIGTSTVHLNRVLQELRTKGLLEIERGA 208 >gi|9937220|gb|AAG02351.1|AF210249_10 metal-dependent regulatory protein [Streptomyces verticillus] Length = 113 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IRVL D P + + A I L + L L ++GIV + R Sbjct: 22 IRVLELL---QDGPMPVRDLLAAIEIEPSALSQQLAVLRRSGIVTSTR 66 >gi|52079695|ref|YP_078486.1| DNA-binding protein [Bacillus licheniformis ATCC 14580] gi|52785058|ref|YP_090887.1| hypothetical protein BLi01288 [Bacillus licheniformis ATCC 14580] gi|319646507|ref|ZP_08000736.1| hypothetical protein HMPREF1012_01772 [Bacillus sp. BT1B_CT2] gi|52002906|gb|AAU22848.1| hypothetical DNA-binding protein [Bacillus licheniformis ATCC 14580] gi|52347560|gb|AAU40194.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391095|gb|EFV71893.1| hypothetical protein HMPREF1012_01772 [Bacillus sp. BT1B_CT2] Length = 315 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 + IH ++A +S + + L L G+ + + G GG L Sbjct: 10 LMMTIHTKRKFTAGELAVEFGVSYRTVLRDLDELSALGVPIYSETGANGGYYLLNEP 66 >gi|22537099|ref|NP_687950.1| GntR family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|25010982|ref|NP_735377.1| GntR family transcriptional regulator [Streptococcus agalactiae NEM316] gi|76788533|ref|YP_329655.1| GntR family transcriptional regulator [Streptococcus agalactiae A909] gi|77406845|ref|ZP_00783874.1| transcriptional regulator, GntR family [Streptococcus agalactiae H36B] gi|77408945|ref|ZP_00785668.1| transcriptional regulator, GntR family [Streptococcus agalactiae COH1] gi|77411009|ref|ZP_00787364.1| transcriptional regulator, GntR family [Streptococcus agalactiae CJB111] gi|77413239|ref|ZP_00789436.1| transcriptional regulator, GntR family [Streptococcus agalactiae 515] gi|22533959|gb|AAM99822.1|AE014234_12 transcriptional regulator, GntR family [Streptococcus agalactiae 2603V/R] gi|23095382|emb|CAD46587.1| Unknown [Streptococcus agalactiae NEM316] gi|76563590|gb|ABA46174.1| transcriptional regulator, GntR family [Streptococcus agalactiae A909] gi|77160699|gb|EAO71813.1| transcriptional regulator, GntR family [Streptococcus agalactiae 515] gi|77162933|gb|EAO73889.1| transcriptional regulator, GntR family [Streptococcus agalactiae CJB111] gi|77172445|gb|EAO75591.1| transcriptional regulator, GntR family [Streptococcus agalactiae COH1] gi|77174539|gb|EAO77379.1| transcriptional regulator, GntR family [Streptococcus agalactiae H36B] gi|319744958|gb|EFV97288.1| GntR family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 122 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + ++A+ ++ + + L + G+V + R Sbjct: 31 GDQLPTVRELAQEAGVNPNTMQRAFTELEREGMVFSQR 68 >gi|310639970|ref|YP_003944728.1| arsr family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309244920|gb|ADO54487.1| ArsR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 318 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RGRRG 62 + +++ A + P I ++AEA +S + ++ L +A I+ T GR G Sbjct: 22 LNMIVLLA---EKPMNIRELAEALGLSSAIMTMHVKKLERASIISTKMLPGRGG 72 >gi|308067258|ref|YP_003868863.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305856537|gb|ADM68325.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 318 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RGRRG 62 + +++ A + P I ++AEA +S + ++ L +A I+ T GR G Sbjct: 22 LNMIVLLA---EKPMNIRELAEALGLSSAIMTMHVKKLERASIISTKMLPGRGG 72 >gi|306825665|ref|ZP_07459004.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432026|gb|EFM35003.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 262 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79 N+ S IA+ I+ + L+ L AGI+E+ G +G ++ I D+ Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254 Query: 80 KAT 82 + Sbjct: 255 EEV 257 >gi|271964160|ref|YP_003338356.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507335|gb|ACZ85613.1| GntR family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 115 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 D +AEA I+ + + L+ L G++E RGR G L RP Sbjct: 31 APGDRLPPARDLAEALGINANTVLRALRDLRDEGVLEFRRGR-GVSVLSRP 80 >gi|260430039|ref|ZP_05784014.1| regulatory protein IclR [Citreicella sp. SE45] gi|260418962|gb|EEX12217.1| regulatory protein IclR [Citreicella sp. SE45] Length = 253 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +L+ ++QI+E ++ + L L G ET GR G RL Sbjct: 13 ALEILLILGDATAEGFSLAQISERLGCAKSVAHRSLSALRAKGFAETA-GRYGHYRLG 69 >gi|300780724|ref|ZP_07090578.1| ArsR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300532431|gb|EFK53492.1| ArsR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 156 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 8/75 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +++++ N P+ + ++ S+ + + L+ L AG+V R GR RL P Sbjct: 31 LQIILLL---NQQPHVVHELVTELEKSQPLVSQHLRVLKNAGLVSATRTGREMVYRLAIP 87 Query: 70 ADQITILDVVKATEE 84 +++ ++++ Sbjct: 88 ----SVMSIIESISG 98 >gi|238755624|ref|ZP_04616960.1| Transcriptional regulator, ArsR family/rhodanese-like domain protein [Yersinia ruckeri ATCC 29473] gi|238706137|gb|EEP98518.1| Transcriptional regulator, ArsR family/rhodanese-like domain protein [Yersinia ruckeri ATCC 29473] Length = 182 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVK 80 ++AE IS + LQ L + G V+ R G+ L R Q +L ++ Sbjct: 2 ERLAELANISIANASQHLQHLKRVGFVQARRDGKNVLYSLGRGPVQ-NLLTAIR 54 >gi|228938569|ref|ZP_04101176.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971447|ref|ZP_04132073.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978061|ref|ZP_04138439.1| Transcriptional regulator, GntR [Bacillus thuringiensis Bt407] gi|229144057|ref|ZP_04272473.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST24] gi|228639454|gb|EEK95868.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST24] gi|228781533|gb|EEM29733.1| Transcriptional regulator, GntR [Bacillus thuringiensis Bt407] gi|228788314|gb|EEM36267.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821075|gb|EEM67093.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 111 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D + ++A ++ + + Q L + G+V T RG Sbjct: 14 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 56 >gi|225869311|ref|YP_002745259.1| MarR family transcriptional regulator [Streptococcus equi subsp. zooepidemicus] gi|225702587|emb|CAX00597.1| MarR family regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 149 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 VL++ H D + I + IS+ +++ + K G + V Sbjct: 37 HVLVFLHCHQDRDIFVKDIEKELQISKSVTSNLVKRMEKNGFIRVV 82 >gi|254453576|ref|ZP_05067013.1| phosphonates metabolism transcriptional regulator PhnF [Octadecabacter antarcticus 238] gi|198267982|gb|EDY92252.1| phosphonates metabolism transcriptional regulator PhnF [Octadecabacter antarcticus 238] Length = 237 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 D + A ++ + + L L GIV RG GV + I V Sbjct: 26 QGDKLPTEAVFAARFGVNRHTVRQALGALADEGIVHARRGA--GVFVAMTPTDYPIGRRV 83 Query: 80 K 80 + Sbjct: 84 R 84 >gi|187929868|ref|YP_001900355.1| IclR family transcriptional regulator [Ralstonia pickettii 12J] gi|187726758|gb|ACD27923.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J] Length = 256 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 RVLM A + P ++ E + + L++ + L + G V G Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAG 71 >gi|28379860|ref|NP_786752.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28272701|emb|CAD65630.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 255 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 21/41 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + +I+ I++ +S + K + L K G+V+ +RG Sbjct: 14 LRQQGTIKITDISKEISVSRETVRKDIYTLDKQGLVQAIRG 54 >gi|329921987|ref|ZP_08277794.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] gi|328942447|gb|EGG38710.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] Length = 305 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +R+L Y A D P +S++A L L L AG++ + Sbjct: 232 LRLLRYIA---DEPKAVSEMASELGQPYEQLMHHLMILRAAGLLRSH 275 >gi|296125224|ref|YP_003632476.1| ribonuclease BN [Brachyspira murdochii DSM 12563] gi|296017040|gb|ADG70277.1| ribonuclease BN [Brachyspira murdochii DSM 12563] Length = 583 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPADQITILD 77 I+ + ++A+ + + +I L K+ V + V G L + ITI D Sbjct: 473 INRKKAITMYELAKELRTAPNTITEISNALEKSMFVIKIVNGSNISYSLGSQPESITIGD 532 Query: 78 VV 79 ++ Sbjct: 533 IL 534 >gi|227488724|ref|ZP_03919040.1| DeoR family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227091146|gb|EEI26458.1| DeoR family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 276 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++R + L+ ++ D + +A+AC ++ + L L K G+V R Sbjct: 1 MRFSERQE-----LIETSLARDGHVSVPALAKACGVAPETARRDLAKLEKMGLV---RRV 52 Query: 61 RGG 63 GG Sbjct: 53 HGG 55 >gi|88604407|ref|YP_504585.1| biotin--acetyl-CoA-carboxylase ligase [Methanospirillum hungatei JF-1] gi|88189869|gb|ABD42866.1| Biotin--acetyl-CoA-carboxylase ligase [Methanospirillum hungatei JF-1] Length = 326 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 ++ +D P S+IAEA +S+ ++K + L + G T G G L Sbjct: 8 VLEILERSDKPVETSEIAEALSLSKSAVWKHINELRQLGYDITASGEEG-YVL 59 >gi|331697017|ref|YP_004333256.1| IclR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951706|gb|AEA25403.1| transcriptional regulator, IclR family [Pseudonocardia dioxanivorans CB1190] Length = 258 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + D R+L + + + +S+IA A + + + +IL+ L +V Sbjct: 13 SPAVDSAARILELLSRYRTRTSTLSEIAAALELPKSTVLRILRTLQAHSLVH 64 >gi|308068754|ref|YP_003870359.1| AsrR family transcriptional regulator [Paenibacillus polymyxa E681] gi|305858033|gb|ADM69821.1| Transcriptional regulator, ArsR family [Paenibacillus polymyxa E681] Length = 198 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 16/103 (15%) Query: 1 MHLTKRTDY--GI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 M L K +Y + R+L+ + +A+ +S+ + L +AG Sbjct: 1 MQLDKMVNYHKALADPTRMRILLLLSR---GEMHGQALAKKLNLSQPTVTHHASKLREAG 57 Query: 53 IVETVRGRRGGV-----RLCRPADQITILDVVKATEESFFVAE 90 +++ R + L R + T+ + + E V+E Sbjct: 58 LIKERRDKNTVYFTLNPELIRQHAEATVRFIFEKGEGEEEVSE 100 >gi|303326997|ref|ZP_07357439.1| regulatory protein GntR, HTH [Desulfovibrio sp. 3_1_syn3] gi|302862985|gb|EFL85917.1| regulatory protein GntR, HTH [Desulfovibrio sp. 3_1_syn3] Length = 238 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD-VV 79 D +AE+ +S + K +Q L G++E+ +G G R D + + ++ Sbjct: 36 GDKLPPERALAESFGVSRSSIRKAIQMLAGKGLLESRQG-DGTYV--RAPDMEPLKNAIL 92 Query: 80 KATEESFFVAE 90 +A + V + Sbjct: 93 EAVDSENLVFD 103 >gi|115433821|ref|XP_001217047.1| predicted protein [Aspergillus terreus NIH2624] gi|114189899|gb|EAU31599.1| predicted protein [Aspergillus terreus NIH2624] Length = 459 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 8/51 (15%) Query: 5 KRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53 T+Y A H P IS++A+A + E L +I++ L + G Sbjct: 84 SATEYA------LADHVQKLQPCSISELAQASGLHEQGLSQIVRYLREMGY 128 >gi|107022241|ref|YP_620568.1| GntR-like [Burkholderia cenocepacia AU 1054] gi|116689186|ref|YP_834809.1| GntR domain-containing protein [Burkholderia cenocepacia HI2424] gi|170732490|ref|YP_001764437.1| GntR domain-containing protein [Burkholderia cenocepacia MC0-3] gi|105892430|gb|ABF75595.1| transcriptional regulator, GntR family [Burkholderia cenocepacia AU 1054] gi|116647275|gb|ABK07916.1| transcriptional regulator, GntR family [Burkholderia cenocepacia HI2424] gi|169815732|gb|ACA90315.1| GntR domain protein [Burkholderia cenocepacia MC0-3] Length = 249 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70 D +++ A +S + + + + +G+VET G G L Sbjct: 35 RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLVETRHGI-GSFVLEPSRRQTLGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 139 >gi|296269252|ref|YP_003651884.1| GntR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092039|gb|ADG87991.1| transcriptional regulator, GntR family [Thermobispora bispora DSM 43833] Length = 132 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TIL-DV 78 D IA+A ++ + + L+ L G++E RGR GV + R D ++ V Sbjct: 33 GDRLPPARDIADALGVNVNTVLRSLRELRDEGLLEFRRGR--GVTVVRRPDARESLAPRV 90 Query: 79 VKATEE 84 V+ EE Sbjct: 91 VELLEE 96 >gi|218677048|ref|YP_002395867.1| putative transcriptional regulator [Vibrio splendidus LGP32] gi|218325316|emb|CAV27342.1| putative transcriptional regulator [Vibrio splendidus LGP32] Length = 475 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 +D I Q++E +S+ + + Q L G V +V + G R+ P + I Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYRVKAPNNTI 79 >gi|222480263|ref|YP_002566500.1| transcriptional regulator, ArsR family [Halorubrum lacusprofundi ATCC 49239] gi|222453165|gb|ACM57430.1| transcriptional regulator, ArsR family [Halorubrum lacusprofundi ATCC 49239] Length = 223 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L A P +++I+E +S + L+ L +AG+VE+ Sbjct: 17 RILRLLATK---PCYVTEISEYLDVSPKAVIDHLRKLDEAGLVEST 59 >gi|152972529|ref|YP_001337675.1| hypothetical protein KPN_04024 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329997051|ref|ZP_08302678.1| hypothetical protein HMPREF9538_00314 [Klebsiella sp. MS 92-3] gi|150957378|gb|ABR79408.1| hypothetical protein KPN_04024 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328539166|gb|EGF65197.1| hypothetical protein HMPREF9538_00314 [Klebsiella sp. MS 92-3] Length = 232 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 11 IRVLM-YCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R L+ A + + R +S I +S + IL L K G + RG Sbjct: 166 VRTLLTELADYPEEYRRQINALSFIQRRTNLSRSRVMSILAELRKGGYITVHRGV 220 >gi|126725842|ref|ZP_01741684.1| putative transcription regulator protein [Rhodobacterales bacterium HTCC2150] gi|126705046|gb|EBA04137.1| putative transcription regulator protein [Rhodobacterales bacterium HTCC2150] Length = 108 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Query: 12 RVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L A++ P ++ +A+ IS + + L+ L AG+V Sbjct: 16 RMLFETLAMN---PMSVADLAQTQPISRPAVSQHLKVLENAGLVTAS 59 >gi|7648577|gb|AAF65593.1|AF139916_14 hypothetical protein [Brevibacterium linens] Length = 231 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 IR+L++ A IA IS K++ LV G + Sbjct: 86 AIRMLIH-AQKQGRVVTPKDIARDVGISSASTTKLIDRLVAGGHL 129 >gi|54024435|ref|YP_118677.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54015943|dbj|BAD57313.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 294 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 16/82 (19%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-- 68 + +L A + P ++ IAE I+ +L L AG VR G RL Sbjct: 20 VEILTLLAGAAE-PLPVAAIAERLGIARATATAVLAELDLAGW--AVRVPDRGYRLGPGL 76 Query: 69 --------PADQITILDVVKAT 82 P + I D+++ Sbjct: 77 LTLTGPPLPPE---IGDILQEL 95 >gi|332663128|ref|YP_004445916.1| GntR family transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331942|gb|AEE49043.1| transcriptional regulator, GntR family [Haliscomenobacter hydrossis DSM 1100] Length = 336 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR----GG 63 ND IS+++ ++ + K + L + G + +V+G+ GG Sbjct: 30 LLKKNDQLPSISEMSAHYDLARDTVEKAYRELRERGFIVSVQGKGYYVSGG 80 >gi|330832185|ref|YP_004401010.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis ST3] gi|329306408|gb|AEB80824.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis ST3] Length = 262 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 +L A + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 194 ILGELAGNEGQ-LTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|326385159|ref|ZP_08206827.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196124|gb|EGD53330.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 131 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I+ A +S+ + L+ L AG++++ R Sbjct: 45 LRLFSLIASHAGGEACVCDISPAVDVSQPTVSHHLKVLKAAGLLDSER 92 >gi|310640033|ref|YP_003944791.1| deor family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309244983|gb|ADO54550.1| DeoR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 310 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 LM + + ++AE +S + + L L + G+ + T G GG R Sbjct: 7 ALMRI-LDSRKKYTARELAERFGVSVRTIQRDLDYLQQTGLPLYTETGPHGGYR 59 >gi|302023375|ref|ZP_07248586.1| transcriptional repressor CodY [Streptococcus suis 05HAS68] Length = 262 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 +L A + S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 194 ILGELAGNEGQ-LTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|262045637|ref|ZP_06018655.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037022|gb|EEW38275.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 232 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 11 IRVLM-YCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R L+ A + + R +S I +S + IL L K G + RG Sbjct: 166 VRTLLTELADYPEEYRRQINALSFIQRRTNLSRSRVMSILAELRKGGYITVHRGV 220 >gi|239933278|ref|ZP_04690231.1| GntR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291441632|ref|ZP_06581022.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291344527|gb|EFE71483.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 276 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 D +++ +S L + L+ L G+V RG GG Sbjct: 64 GDRLRPEAEMLAHYNVSRETLREALRLLEVQGLVSIKRGPGGG 106 >gi|227542279|ref|ZP_03972328.1| DeoR family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227181940|gb|EEI62912.1| DeoR family transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 276 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++R + L+ ++ D + +A+AC ++ + L L K G+V R Sbjct: 1 MRFSERQE-----LIETSLARDGHVSVPSLAKACGVAPETARRDLAKLEKMGLV---RRV 52 Query: 61 RGG 63 GG Sbjct: 53 HGG 55 >gi|147920495|ref|YP_685711.1| hypothetical protein RCIX1061 [uncultured methanogenic archaeon RC-I] gi|110621107|emb|CAJ36385.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 142 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCR 68 I ++ + A +ND+ IS+I+E +S + L L+ ++E + G RL R Sbjct: 13 ITIVDFLAENNDFAYTISEISEFTGLSRPTVHSKLPMLIHNRLIEIDSQAGHVKTYRLAR 72 Query: 69 P 69 Sbjct: 73 N 73 >gi|145224056|ref|YP_001134734.1| regulatory protein, ArsR [Mycobacterium gilvum PYR-GCK] gi|315444392|ref|YP_004077271.1| ArsR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145216542|gb|ABP45946.1| transcriptional regulator, ArsR family [Mycobacterium gilvum PYR-GCK] gi|315262695|gb|ADT99436.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1] Length = 135 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D +A A +SE + L L +AG+VE+ R Sbjct: 71 PDEELCSGDLAVAVGLSESTVSHHLSHLRRAGLVESAR 108 >gi|67515727|ref|XP_657749.1| hypothetical protein AN0145.2 [Aspergillus nidulans FGSC A4] gi|40746862|gb|EAA66018.1| hypothetical protein AN0145.2 [Aspergillus nidulans FGSC A4] Length = 1201 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 15/33 (45%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I +AE + E L +I++ AG ++ Sbjct: 258 GTVPIKDVAELAGVPETHLSRIIRMTATAGFLD 290 >gi|322377978|ref|ZP_08052466.1| adc operon repressor AdcR [Streptococcus sp. M334] gi|321281154|gb|EFX58166.1| adc operon repressor AdcR [Streptococcus sp. M334] Length = 170 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S++A +S+ + K ++ LVK G++ET + Sbjct: 66 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 109 >gi|269215427|ref|ZP_06159281.1| regulatory protein GntR, HTH [Slackia exigua ATCC 700122] gi|269130914|gb|EEZ61989.1| regulatory protein GntR, HTH [Slackia exigua ATCC 700122] Length = 141 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + + +A I+ + K L G VE+ RGR Sbjct: 39 VPGEQLPTVRALASDISINYNTVNKAYLALKSDGYVESTRGRG 81 >gi|221633518|ref|YP_002522743.1| putative transcriptional regulator [Thermomicrobium roseum DSM 5159] gi|221156809|gb|ACM05936.1| putative transcriptional regulator [Thermomicrobium roseum DSM 5159] Length = 346 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLV-KAGIVETVRGRRGGVRL 66 L+ A R ++A +SE + K LQ L + G+ R GG L Sbjct: 25 LVMLAQAPKRYTR-RELAARYQVSERQIGKDLQFLRERLGL-AIERAPGGGYYL 76 >gi|254476314|ref|ZP_05089700.1| regulatory protein GntR, HTH [Ruegeria sp. R11] gi|214030557|gb|EEB71392.1| regulatory protein GntR, HTH [Ruegeria sp. R11] Length = 242 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ ++++E +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELSEQFQVSRPTVREALKRLAAQSLIRTQRGATGG 73 >gi|254380949|ref|ZP_04996315.1| GntR-family transcriptional regulator [Streptomyces sp. Mg1] gi|194339860|gb|EDX20826.1| GntR-family transcriptional regulator [Streptomyces sp. Mg1] Length = 137 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + ++T +R M D ++ EA ++ + K + L + G+VE RG Sbjct: 21 QIVQQTKQALR--MGLLEPGDKLPAAREVVEATAVNPNTVLKAYRELEREGLVEARRG 76 >gi|120611014|ref|YP_970692.1| hypothetical protein Aave_2343 [Acidovorax citrulli AAC00-1] gi|120589478|gb|ABM32918.1| hypothetical protein Aave_2343 [Acidovorax citrulli AAC00-1] Length = 379 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRL---CR 68 L A H P R+ +AE ++ + + L +AG V +RG G L R Sbjct: 151 LALIAQHQ--PMRLEHLAELTGRGRVYTRQRVHKLRRAGKVN-IRGVDGSWRYVLPDYVR 207 Query: 69 PADQI 73 I Sbjct: 208 TPADI 212 >gi|111025613|ref|YP_708033.1| IclR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110824592|gb|ABG99875.1| transcriptional regulator, IclR family protein [Rhodococcus jostii RHA1] Length = 284 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 +R L+ + P R+S++AE ++ + + L L G+VE G GG Sbjct: 41 LRCLV----SSPNPLRVSELAELSGLAYTTVHRALGSLRAEGLVE-QGGPNGGY 89 >gi|120403274|ref|YP_953103.1| regulatory protein ArsR [Mycobacterium vanbaalenii PYR-1] gi|119956092|gb|ABM13097.1| transcriptional regulator, ArsR family [Mycobacterium vanbaalenii PYR-1] Length = 129 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+ + +H +S +A A SE + + L+ L + G V R GR RL Sbjct: 57 RLEILLCLHRAPGICVSDLAAALGRSENTVSQALRVLRQQGWVTNTRAGRSVTYRL---- 112 Query: 71 DQITILDVVK 80 + T+ D++ Sbjct: 113 EDETVHDLLH 122 >gi|326331868|ref|ZP_08198155.1| regulatory protein [Nocardioidaceae bacterium Broad-1] gi|325950365|gb|EGD42418.1| regulatory protein [Nocardioidaceae bacterium Broad-1] Length = 241 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 H + ++A+ ++ + + L L G+V T RGR GG Sbjct: 37 AHGERLPSEPELAQMLGVATVTAREALVALRAKGLVVTTRGRGGG 81 >gi|313835550|gb|EFS73264.1| oxidoreductase family, NAD-binding Rossmann fold protein [Propionibacterium acnes HL037PA2] Length = 818 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--GGVRLCRPADQ 72 + + + + EA +S + IL L +G V +RG GG L RPA Sbjct: 66 VLLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWV--IRGASDPGG--LGRPATT 121 Query: 73 ITI-LDV 78 ++ DV Sbjct: 122 WSLGGDV 128 >gi|302339154|ref|YP_003804360.1| ArsR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301636339|gb|ADK81766.1| transcriptional regulator, ArsR family [Spirochaeta smaragdinae DSM 11293] Length = 308 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62 IRV + + + P I++IA+A +++ + + L KAG++ E+++G++G Sbjct: 25 IRVEILL-LVQERPRNINEIAQALDMAQSTIATNVMVLEKAGLIRTESIKGKKG 77 >gi|326790332|ref|YP_004308153.1| AraC family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541096|gb|ADZ82955.1| transcriptional regulator, AraC family [Clostridium lentocellum DSM 5427] Length = 298 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58 Y + H ++ IAE IS +L KI + L + ++R Sbjct: 201 YISAHYTEDLTLTSIAEQFYISPFYLSKIFKKSTNLSIIEYINSLR 246 >gi|295980970|emb|CBJ57218.1| hypothetical protein [Streptococcus pneumoniae] Length = 169 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68 +L+ + +IA+ IS +++ ++ L +AGI + + G+ G L Sbjct: 10 ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65 Query: 69 -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124 P T +V A + C + + S+L+ + L Sbjct: 66 LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122 >gi|289579814|ref|YP_003478280.1| hypothetical protein Nmag_0120 [Natrialba magadii ATCC 43099] gi|289529367|gb|ADD03718.1| conserved hypothetical protein [Natrialba magadii ATCC 43099] Length = 114 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 21/44 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 RV+ Y A ++D S+IA + + + +L L A +V Sbjct: 24 RVITYLARNDDKAFTPSEIAAGTGVKKGSVSTVLSRLEDANLVR 67 >gi|288559839|ref|YP_003423325.1| phosphate uptake regulator PhoU [Methanobrevibacter ruminantium M1] gi|288542549|gb|ADC46433.1| phosphate uptake regulator PhoU [Methanobrevibacter ruminantium M1] Length = 297 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 22/34 (64%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 D P+ +IAE IS ++ ++L+PL++ IV+ Sbjct: 18 DKPSTQDEIAEKLKISRRYVTQLLKPLIEEDIVK 51 >gi|312198084|ref|YP_004018145.1| GCN5-related N-acetyltransferase [Frankia sp. EuI1c] gi|311229420|gb|ADP82275.1| GCN5-related N-acetyltransferase [Frankia sp. EuI1c] Length = 317 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 17/124 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGGVRLC 67 RVL A +++ + +L +IL+ G+ ET GRR VRL Sbjct: 51 RVLYELAQRP--TTSAAELRRELDVDASYLGRILRRFGADGLTETTASTQDGRRRDVRLT 108 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127 R T ++ + ++E S L A+ A +VL Sbjct: 109 RHGHD-TFAELNRLSDERAHRFLGALSEADQ----------HRLLTAMEAIQNVLGGRPR 157 Query: 128 ECLV 131 LV Sbjct: 158 ADLV 161 >gi|229095946|ref|ZP_04226922.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-29] gi|228687456|gb|EEL41358.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-29] Length = 126 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + + Q L + G+V T RG Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|97182146|sp|Q9LBW6|RMPR_MYCGS RecName: Full=Putative HTH-type transcriptional regulator rmpR; AltName: Full=DNA-binding regulatory protein rmpR Length = 274 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + + ++E + L + L L + G+VET RGR GG Sbjct: 40 GERLPPEAALSEMFGVGGATLREALSELRERGVVETRRGRSGG 82 >gi|120406816|ref|YP_956645.1| UbiC transcription regulator-associated domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959634|gb|ABM16639.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii PYR-1] Length = 245 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 24/44 (54%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A D +++++ ++ L + + L L + G++ETVRG+ Sbjct: 33 AKPGDKLPSEAELSQEFEVNRLTVRRALDELNQRGLIETVRGKG 76 >gi|150016758|ref|YP_001309012.1| GntR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903223|gb|ABR34056.1| regulatory protein GntR, HTH [Clostridium beijerinckii NCIMB 8052] Length = 132 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++A I+ + K L + GI+ET+RG+ Sbjct: 32 GEKLPSVRELASILMINPNTISKAYGELEREGIIETLRGKG 72 >gi|324324687|gb|ADY19947.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 313 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|301052300|ref|YP_003790511.1| putative transcriptional regulator [Bacillus anthracis CI] gi|300374469|gb|ADK03373.1| possible transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 313 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|239927349|ref|ZP_04684302.1| DeoR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291435690|ref|ZP_06575080.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291338585|gb|EFE65541.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 375 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++A +S +++ ++ L AG+ V RGR GGVRL Sbjct: 14 QQRERVPATELARRLEVSVRTVYRDVEALSAAGVPVYAERGRYGGVRL 61 >gi|228913337|ref|ZP_04076970.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846246|gb|EEM91265.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 326 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70 >gi|228925836|ref|ZP_04088920.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833851|gb|EEM79404.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 327 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 75 >gi|228944400|ref|ZP_04106773.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815302|gb|EEM61550.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 326 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70 >gi|229089710|ref|ZP_04220971.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-42] gi|228693609|gb|EEL47311.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-42] Length = 326 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70 >gi|229120298|ref|ZP_04249548.1| Transcriptional regulator, DeoR [Bacillus cereus 95/8201] gi|228663108|gb|EEL18698.1| Transcriptional regulator, DeoR [Bacillus cereus 95/8201] Length = 326 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70 >gi|229182982|ref|ZP_04310214.1| Transcriptional regulator, DeoR [Bacillus cereus BGSC 6E1] gi|228600439|gb|EEK58027.1| Transcriptional regulator, DeoR [Bacillus cereus BGSC 6E1] Length = 327 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 35 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 75 >gi|226363627|ref|YP_002781409.1| ArsR family transcriptional regulator [Rhodococcus opacus B4] gi|226242116|dbj|BAH52464.1| putative ArsR family transcriptional regulator [Rhodococcus opacus B4] Length = 103 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 12/70 (17%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCR 68 R+L A D P +A +S + + LQ L +AG+V + R R L Sbjct: 17 RLLEILA---DGPLTAGDLAGRFDLSRPAVAEHLQVLRRAGLVRDEPSGRQRH--YHLTA 71 Query: 69 PADQITILDV 78 + DV Sbjct: 72 EP----LADV 77 >gi|254477455|ref|ZP_05090841.1| phosphonates metabolism transcriptional regulator PhnF [Ruegeria sp. R11] gi|214031698|gb|EEB72533.1| phosphonates metabolism transcriptional regulator PhnF [Ruegeria sp. R11] Length = 240 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D +Q+A ++ + + L + + G++ RG GV + I V+ Sbjct: 26 GDKLPSEAQLASRFGVNRHTVRRALAEMAEEGLLHARRGA--GVFVASRPTDYPIGKRVR 83 >gi|196047165|ref|ZP_03114382.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196022035|gb|EDX60725.1| conserved hypothetical protein [Bacillus cereus 03BB108] Length = 313 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|196035766|ref|ZP_03103169.1| conserved hypothetical protein [Bacillus cereus W] gi|218901844|ref|YP_002449678.1| hypothetical protein BCAH820_0705 [Bacillus cereus AH820] gi|195991733|gb|EDX55698.1| conserved hypothetical protein [Bacillus cereus W] gi|218539384|gb|ACK91782.1| conserved hypothetical protein [Bacillus cereus AH820] Length = 317 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|118476334|ref|YP_893485.1| DeoR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118415559|gb|ABK83978.1| transcriptional regulator, DeoR family [Bacillus thuringiensis str. Al Hakam] Length = 322 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70 >gi|49476855|ref|YP_034906.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328411|gb|AAT59057.1| conserved hypothetical protein, possible transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 317 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|52144662|ref|YP_082165.1| transcriptional regulator [Bacillus cereus E33L] gi|51978131|gb|AAU19681.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 317 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|30260802|ref|NP_843179.1| hypothetical protein BA_0648 [Bacillus anthracis str. Ames] gi|47777840|ref|YP_017276.2| hypothetical protein GBAA_0648 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183640|ref|YP_026892.1| hypothetical protein BAS0615 [Bacillus anthracis str. Sterne] gi|165872698|ref|ZP_02217327.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167635219|ref|ZP_02393535.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167640880|ref|ZP_02399138.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170689045|ref|ZP_02880245.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170708460|ref|ZP_02898902.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177652823|ref|ZP_02935196.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568555|ref|ZP_03021461.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227816482|ref|YP_002816491.1| hypothetical protein BAMEG_3939 [Bacillus anthracis str. CDC 684] gi|229602563|ref|YP_002865246.1| hypothetical protein BAA_0730 [Bacillus anthracis str. A0248] gi|254684275|ref|ZP_05148135.1| hypothetical protein BantC_10502 [Bacillus anthracis str. CNEVA-9066] gi|254722079|ref|ZP_05183868.1| hypothetical protein BantA1_06372 [Bacillus anthracis str. A1055] gi|254738740|ref|ZP_05196443.1| hypothetical protein BantWNA_26554 [Bacillus anthracis str. Western North America USA6153] gi|254742048|ref|ZP_05199735.1| hypothetical protein BantKB_13741 [Bacillus anthracis str. Kruger B] gi|254754965|ref|ZP_05206999.1| hypothetical protein BantV_21007 [Bacillus anthracis str. Vollum] gi|254762304|ref|ZP_05214148.1| hypothetical protein BantA9_27807 [Bacillus anthracis str. Australia 94] gi|30254251|gb|AAP24665.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47551545|gb|AAT29751.2| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177567|gb|AAT52943.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164711559|gb|EDR17107.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167511100|gb|EDR86488.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167529478|gb|EDR92229.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170126581|gb|EDS95466.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170667030|gb|EDT17793.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172081857|gb|EDT66926.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190560349|gb|EDV14328.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227006835|gb|ACP16578.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229266971|gb|ACQ48608.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 317 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61 >gi|55378342|ref|YP_136192.1| cell division control protein 6 [Haloarcula marismortui ATCC 43049] gi|62286605|sp|Q5V1W6|CDC63_HALMA RecName: Full=Cell division control protein 6 homolog 3; Short=CDC6 homolog 3 gi|55231067|gb|AAV46486.1| cell division control protein 6 [Haloarcula marismortui ATCC 43049] Length = 403 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 28/105 (26%) Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQ-------IAEACCISELFLFKI---LQPLV 49 M LTK + ++ A + P RI IAE + L ++ L L Sbjct: 292 MRELTKHGHLALVAMLQLAFEQETPARIRDVYPLYRRIAEGSNVDPLVRRRMHDHLADLA 351 Query: 50 KAGIVETV---RGRRGGVR--------LCRPADQITILDVVKATE 83 GI+ GR GG L I + DVV+ + Sbjct: 352 MLGILGRQMKNEGRAGGHYYQYEFDVGL-----DI-VGDVVRDFD 390 >gi|314928575|gb|EFS92406.1| oxidoreductase family, NAD-binding Rossmann fold protein [Propionibacterium acnes HL044PA1] gi|314970376|gb|EFT14474.1| oxidoreductase family, NAD-binding Rossmann fold protein [Propionibacterium acnes HL037PA3] Length = 818 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--GGVRLCRPADQ 72 + + + + EA +S + IL L +G V +RG GG L RPA Sbjct: 66 VLLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWV--IRGASDPGG--LGRPATT 121 Query: 73 ITI-LDV 78 ++ DV Sbjct: 122 WSLGGDV 128 >gi|297195234|ref|ZP_06912632.1| DeoR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152717|gb|EFH31958.1| DeoR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 343 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L + G V G GG +L A+ Sbjct: 32 SGADLADRLGVTPRTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 78 >gi|296165059|ref|ZP_06847613.1| ArsR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899591|gb|EFG79043.1| ArsR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 128 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 10/82 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP 69 +R++ A H + + +S+ + L+ LV+AG++ T RG+ RL Sbjct: 53 LRLVSMIAGHEGAEACVCDLTATVGLSQPTVSHHLKILVEAGLLDRTQRGKWAYYRLVPA 112 Query: 70 ADQITILDVVKATEESFFVAEC 91 A + A FV C Sbjct: 113 A--------LDAL-GGVFVVRC 125 >gi|289192118|ref|YP_003458059.1| phosphate uptake regulator, PhoU [Methanocaldococcus sp. FS406-22] gi|288938568|gb|ADC69323.1| phosphate uptake regulator, PhoU [Methanocaldococcus sp. FS406-22] Length = 281 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 IRV++ + P +IAE IS ++ K+L+PL+ IV+ Sbjct: 13 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDEKIVK 52 >gi|256811270|ref|YP_003128639.1| phosphate uptake regulator, PhoU [Methanocaldococcus fervens AG86] gi|256794470|gb|ACV25139.1| phosphate uptake regulator, PhoU [Methanocaldococcus fervens AG86] Length = 281 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 IRV++ + P +IAE IS ++ K+L+PL+ IV+ Sbjct: 13 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDEKIVK 52 >gi|228906397|ref|ZP_04070280.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 200] gi|228853213|gb|EEM97987.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 200] Length = 112 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA+ IS + + + L G+ + +GR GG + Sbjct: 32 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 72 >gi|229076878|ref|ZP_04209756.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-18] gi|228706273|gb|EEL58543.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-18] Length = 126 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + + Q L + G+V T RG Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|297561055|ref|YP_003680029.1| hypothetical protein Ndas_2098 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845503|gb|ADH67523.1| Helix-turn-helix type 11 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 318 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++A+ +S + + + L + G ++ G GG +L Sbjct: 25 ELADRLQVSPRTVRRDVDRLRELGYPIQATMGTGGGYQLG 64 >gi|218764888|gb|ACL11813.1| putative transcriptional regulator [Mycobacterium brisbanense] Length = 278 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 14/112 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-PAD 71 + + S +++ +S + + L LV AG+V + G R+ R D Sbjct: 75 AIRDLRLAPGTELSESALSQRFGVSRTPVREALAKLVDAGLVHVT--PQVGTRVARIRPD 132 Query: 72 QITILDVVK-ATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFD 120 + V+ E + + C + L +L + A+ D Sbjct: 133 DVRQAQFVREHLE--------LGAFEAACARTDLSTERLHHLLDEQREAYDD 176 >gi|218289291|ref|ZP_03493526.1| transcriptional regulator, MarR family [Alicyclobacillus acidocaldarius LAA1] gi|218240639|gb|EED07819.1| transcriptional regulator, MarR family [Alicyclobacillus acidocaldarius LAA1] Length = 112 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + ++E + + L ++ L + G+VE R Sbjct: 25 LRILKALA---EGEQTAGALSERLGVRQNTLSHHMRQLREHGLVEVRR 69 >gi|206901174|ref|YP_002250349.1| transcriptional regulator, GntR family [Dictyoglomus thermophilum H-6-12] gi|206740277|gb|ACI19335.1| transcriptional regulator, GntR family [Dictyoglomus thermophilum H-6-12] Length = 122 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++AE ++ + K Q L + GI T+RG Sbjct: 31 GDKLPSVRELAEMLKVNPNTVQKAYQELEREGITYTLRGTG 71 >gi|254388331|ref|ZP_05003566.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294814322|ref|ZP_06772965.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197702053|gb|EDY47865.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326921|gb|EFG08564.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 331 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L+ A +P +++A +S + + L L AG+V R Sbjct: 267 RALL-LAELT-HPASTTELARRLGLSAGGVSQHLTALRAAGLVSAHR 311 >gi|261406254|ref|YP_003242495.1| ArsR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261282717|gb|ACX64688.1| transcriptional regulator, ArsR family [Paenibacillus sp. Y412MC10] Length = 305 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +R+L Y A D P +S++A L L L AG++ + Sbjct: 232 LRLLRYIA---DEPKAVSEMASELGQPYEQLMHHLMILRAAGLLRSH 275 >gi|239827690|ref|YP_002950314.1| manganese transport transcriptional regulator [Geobacillus sp. WCH70] gi|259495860|sp|C5D492|MNTR_GEOSW RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|239807983|gb|ACS25048.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. WCH70] Length = 142 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTAKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|148257014|ref|YP_001241599.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409187|gb|ABQ37693.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1] Length = 228 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 9 YG-IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y +R L+ P +QIA A +S + + + L G+VE Sbjct: 17 YADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSDEGLVE 65 >gi|108758017|ref|YP_634671.1| ROK family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108461897|gb|ABF87082.1| transcriptional regulator, ROK family [Myxococcus xanthus DK 1622] Length = 408 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---GGVR 65 + ++IA +S + I+ L ++G+V ++ G GG R Sbjct: 29 RERQISRAEIARRTELSPSTVSAIVADLERSGLVRSI-GAGVSRGGRR 75 >gi|78045081|ref|YP_359689.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901] gi|77997196|gb|ABB16095.1| DNA repair protein RadA domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 547 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 +IAE + +L+ L + G+V + GR L + I Sbjct: 416 GGSASPKEIAEITERPHGSVKHLLRKLEEDGLVTSFNGR---YSLTTSLNDI 464 >gi|330011677|ref|ZP_08307144.1| transcriptional regulator, GntR family [Klebsiella sp. MS 92-3] gi|328534101|gb|EGF60739.1| transcriptional regulator, GntR family [Klebsiella sp. MS 92-3] Length = 475 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+L+ + P ++A A +S + L L + G + + +G + L Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92 Query: 67 CRPADQITI 75 + + Sbjct: 93 PERPADLPL 101 >gi|296129950|ref|YP_003637200.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM 20109] gi|296021765|gb|ADG75001.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM 20109] Length = 163 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 VL++ ++ P ++A+AC ++E + +++ L + G V RP D+ Sbjct: 43 VLVHLSM---SPMSQRELADACGVTEQTMSRVVARLARTGYVS-----------RRPHDE 88 Query: 73 ITILDVVKATE-ESFFVAECFASHKID 98 VV TE + +A C Sbjct: 89 DRRRHVVAITESGASALAACADPTPAQ 115 >gi|262041465|ref|ZP_06014666.1| GntR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041185|gb|EEW42255.1| GntR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 475 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+L+ + P ++A A +S + L L + G + + +G + L Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92 Query: 67 CRPADQITI 75 + + Sbjct: 93 PERPADLPL 101 >gi|238893408|ref|YP_002918142.1| putative GntR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238545724|dbj|BAH62075.1| putative GntR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 481 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+L+ + P ++A A +S + L L + G + + +G + L Sbjct: 40 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 98 Query: 67 CRPADQITI 75 + + Sbjct: 99 PERPADLPL 107 >gi|229819143|ref|YP_002880669.1| IclR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565056|gb|ACQ78907.1| transcriptional regulator, IclR family [Beutenbergia cavernae DSM 12333] Length = 259 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 G+ +L + A H + +IA IS ++++ L G + + GGVRL Sbjct: 19 GLTILEFVAEHG--RVGVGEIAAELEISRSAAYRLVSQLRDRGFL-SEPSDGGGVRLG 73 >gi|256374422|ref|YP_003098082.1| AsnC family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918725|gb|ACU34236.1| transcriptional regulator, AsnC family [Actinosynnema mirum DSM 43827] Length = 149 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ A+ D +++A +S + + ++ L AG++ R Sbjct: 11 ALVD-ALQADARLSYNELARKVGVSPPTVAQRVRRLENAGVITGYR 55 >gi|172039640|ref|YP_001806141.1| hypothetical protein cce_4727 [Cyanothece sp. ATCC 51142] gi|171701094|gb|ACB54075.1| unknown [Cyanothece sp. ATCC 51142] Length = 333 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 Q+A + + K+ Q L +A +VE++ G G + ++I++ Sbjct: 45 STRQLATMTGLHRNTISKVYQQLEEASLVESIAG-SGIYVKAQNNEEISL 93 >gi|152968994|ref|YP_001334103.1| GntR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953843|gb|ABR75873.1| putative transcriptional regulator (GntR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 475 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+L+ + P ++A A +S + L L + G + + +G + L Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92 Query: 67 CRPADQITI 75 + + Sbjct: 93 PERPADLPL 101 >gi|330684496|gb|EGG96212.1| HTH domain protein [Staphylococcus epidermidis VCU121] Length = 232 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75 I S++A+ +S+ + + + L G+ + G +GG ++ +I + Sbjct: 14 IQQSNKITASELAKRFNVSKRTILRDIDDLENQGVQIHASHGSQGGYKIQDAQAKIAL 71 >gi|328957030|ref|YP_004374416.1| hypothetical protein CAR_c07060 [Carnobacterium sp. 17-4] gi|328673354|gb|AEB29400.1| hypothetical protein CAR_c07060 [Carnobacterium sp. 17-4] Length = 443 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ----ITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R+ R + +T + Sbjct: 18 GEKISVRSIAKNLNVSEGTAYRAIKDAQNDGLVSTIQ-RVGTIRIERKMKETFETLTYGE 76 Query: 78 VVKATEESF 86 VVK + Sbjct: 77 VVKIIDGDI 85 >gi|329116402|ref|ZP_08245119.1| trehalose operon repressor [Streptococcus parauberis NCFD 2020] gi|326906807|gb|EGE53721.1| trehalose operon repressor [Streptococcus parauberis NCFD 2020] Length = 244 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + S + K L L KAG+V++ +GR Sbjct: 38 ELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRG 70 >gi|305663699|ref|YP_003859987.1| iron (metal) dependent repressor, DtxR family [Ignisphaera aggregans DSM 17230] gi|304378268|gb|ADM28107.1| iron (metal) dependent repressor, DtxR family [Ignisphaera aggregans DSM 17230] Length = 223 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIV 54 R + IA+ +S + K L+ L K G + Sbjct: 27 GTVRTNDIAQELGVSPSTVSKTLRKLAKDGYI 58 >gi|303242402|ref|ZP_07328886.1| Helix-turn-helix type 11 domain protein [Acetivibrio cellulolyticus CD2] gi|302590080|gb|EFL59844.1| Helix-turn-helix type 11 domain protein [Acetivibrio cellulolyticus CD2] Length = 300 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++E +S+ +++ + L AGI + +G+ GG+ L Sbjct: 19 VTAKELSEHFEVSQRTIYRDVDALSAAGIPIYANKGKGGGISL 61 >gi|283832216|ref|ZP_06351957.1| putative ARAC-type regulatory protein [Citrobacter youngae ATCC 29220] gi|291071855|gb|EFE09964.1| putative ARAC-type regulatory protein [Citrobacter youngae ATCC 29220] Length = 287 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 14/36 (38%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 P +A+ IS L KI G VE VR Sbjct: 196 QPLSRENVAQFFNISPNHLSKIFTQHGTMGFVEYVR 231 >gi|229102059|ref|ZP_04232770.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-28] gi|229114900|ref|ZP_04244313.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-3] gi|228668592|gb|EEL24021.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-3] gi|228681259|gb|EEL35425.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-28] Length = 126 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + + Q L + G+V T RG Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71 >gi|291288770|ref|YP_003505586.1| transcriptional regulator, IclR family [Denitrovibrio acetiphilus DSM 12809] gi|290885930|gb|ADD69630.1| transcriptional regulator, IclR family [Denitrovibrio acetiphilus DSM 12809] Length = 263 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 6 RTDYGIRVL------MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +++Y ++ + + D+ I+ I ++ + K+L L G VE R Sbjct: 5 KSEYAVQAVSNAIDILELLGEQDHEFSITDIVSDLNLTRSNVNKLLSTLELLGYVEHNR- 63 Query: 60 RRGGVRLCRPADQIT 74 G RL QI+ Sbjct: 64 YTGNFRLGVKTFQIS 78 >gi|261855721|ref|YP_003263004.1| iron (metal) dependent repressor, DtxR family [Halothiobacillus neapolitanus c2] gi|261836190|gb|ACX95957.1| iron (metal) dependent repressor, DtxR family [Halothiobacillus neapolitanus c2] Length = 227 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 1 MHLT-KRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + DY ++ + A +D S IAE I++ + +L+ L G++E R Sbjct: 1 MKTSIAYEDY-LKAIFKLAEQRSDSAASTSAIAERLNIAQASVTAMLKRLSHDGLIEYER 59 Query: 59 GRRGGVRLCRPADQITILDVVK 80 G RL I I D+++ Sbjct: 60 --YQGARLTSAGAAIAI-DMIR 78 >gi|167837174|ref|ZP_02464057.1| transcriptional regulator, IclR family protein [Burkholderia thailandensis MSMB43] Length = 270 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|104780995|ref|YP_607493.1| GntR family transcriptional regulator [Pseudomonas entomophila L48] gi|95109982|emb|CAK14687.1| putative transcriptional regulator, GntR family [Pseudomonas entomophila L48] Length = 233 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL------CRPADQI---TILDV 78 ++AE IS L + + L G+V ++ G+ G + L + + I ++ DV Sbjct: 34 RELAEQLGISRPSLREAVTVLETLGLVRSMPGK-GVLVLDADSAQAQEPEAIAAASLADV 92 Query: 79 VK 80 ++ Sbjct: 93 LE 94 >gi|50955714|ref|YP_063002.1| IclR family transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952196|gb|AAT89897.1| transcriptional regulator, IclR family [Leifsonia xyli subsp. xyli str. CTCB07] Length = 251 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R+L + A P + IA A + ++ +L L + G V Sbjct: 11 LRILNHLAGQRG-PVPAASIAAALTLPRSTVYHLLTALGEHGFV 53 >gi|296268295|ref|YP_003650927.1| hypothetical protein Tbis_0303 [Thermobispora bispora DSM 43833] gi|296091082|gb|ADG87034.1| protein of unknown function DUF742 [Thermobispora bispora DSM 43833] Length = 117 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L C P+ ++ +A +S L +L L G++ +VR + + R Sbjct: 51 LRILRIC----RTPSTVADLASELGLSLNVLRILLSDLRDKGLI-SVR-PQA--TVARLP 102 Query: 71 DQITILDVVKAT 82 D+ + +V++A Sbjct: 103 DERILREVIQAF 114 >gi|284039259|ref|YP_003389189.1| MarR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283818552|gb|ADB40390.1| transcriptional regulator, MarR family [Spirosoma linguale DSM 74] Length = 161 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 TD+ + LM+ A + +++A+ C+++ + KI+ L G + T + Sbjct: 47 FTDFKMSYLMFLANIEEGGTTNNELAKRACVTKQMMSKIVGLLEAEGYIYTQK 99 >gi|256392480|ref|YP_003114044.1| GntR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358706|gb|ACU72203.1| transcriptional regulator, GntR family [Catenulispora acidiphila DSM 44928] Length = 250 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R+ +RV + + IAE +SE+ + + L+ + + G+++ RGR GG Sbjct: 46 RSRIALRVRLGVLASGERLPDTGVIAEELGMSEMTVRRALETMCQDGLLDRRRGRVGG 103 >gi|160940186|ref|ZP_02087531.1| hypothetical protein CLOBOL_05075 [Clostridium bolteae ATCC BAA-613] gi|158436766|gb|EDP14533.1| hypothetical protein CLOBOL_05075 [Clostridium bolteae ATCC BAA-613] Length = 487 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A +S + K L L + G V+T+ G+ Sbjct: 283 KQLAGQYNVSLSTVRKALSELEQRGFVKTLNGKG 316 >gi|78065748|ref|YP_368517.1| GntR family transcriptional regulator [Burkholderia sp. 383] gi|77966493|gb|ABB07873.1| transcriptional regulator, GntR family [Burkholderia sp. 383] Length = 253 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70 D +++ A +S + + + + +G+VET G G L Sbjct: 35 RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLVETRHGI-GSFVLELSRRQTLGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRANDTD----LAALRRALDAI 139 >gi|326442712|ref|ZP_08217446.1| ArsR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 328 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L+ A +P +++A +S + + L L AG+V R Sbjct: 264 RALL-LAELT-HPASTTELARRLGLSAGGVSQHLTALRAAGLVSAHR 308 >gi|206575907|ref|YP_002237281.1| transcriptional regulator, GntR family [Klebsiella pneumoniae 342] gi|288934217|ref|YP_003438276.1| GntR family transcriptional regulator with [Klebsiella variicola At-22] gi|206564965|gb|ACI06741.1| transcriptional regulator, GntR family [Klebsiella pneumoniae 342] gi|288888946|gb|ADC57264.1| transcriptional regulator, GntR family [Klebsiella variicola At-22] Length = 245 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE +S L K L+ L + G++E G Sbjct: 29 KELAELYDVSRNTLRKALKTLEEDGLIERRHGSG 62 >gi|114761158|ref|ZP_01441073.1| transcriptional regulator, GntR family protein [Pelagibaca bermudensis HTCC2601] gi|114545406|gb|EAU48408.1| transcriptional regulator, GntR family protein [Roseovarius sp. HTCC2601] Length = 236 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+AE +S L L+ L + G+V + +G Sbjct: 31 QLAEEFGVSRPVLRTALERLREEGLVVSRQGAG 63 >gi|145296411|ref|YP_001139232.1| hypothetical protein cgR_2325 [Corynebacterium glutamicum R] gi|57158181|dbj|BAD84148.1| putative regulator [Corynebacterium glutamicum] gi|140846331|dbj|BAF55330.1| hypothetical protein [Corynebacterium glutamicum R] Length = 260 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +L A R+ +AE IS + +IL L G V+ Sbjct: 17 AATILETVASAGSEGIRLLDLAEDTGISRPTVHRILGDLRALGYVQ 62 >gi|330836038|ref|YP_004410679.1| transcriptional regulator, AraC family [Spirochaeta coccoides DSM 17374] gi|329747941|gb|AEC01297.1| transcriptional regulator, AraC family [Spirochaeta coccoides DSM 17374] Length = 1082 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R + Y H Q+AEA +SE +L +I + Sbjct: 985 RAMAYLQAHAAEHVSRWQVAEAVNVSEDYLTRIFRR 1020 >gi|312144156|ref|YP_003995602.1| regulatory protein ArsR [Halanaerobium sp. 'sapolanicus'] gi|311904807|gb|ADQ15248.1| regulatory protein ArsR [Halanaerobium sp. 'sapolanicus'] Length = 111 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 24/48 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ + + + +S++ + I + L + L L AGI+++ R Sbjct: 34 VRLTIVKGLLAEEGCNVSEMQQCLDIPQSTLSQHLAKLRDAGILKSER 81 >gi|301059313|ref|ZP_07200240.1| IclR helix-turn-helix domain protein [delta proteobacterium NaphS2] gi|300446542|gb|EFK10380.1| IclR helix-turn-helix domain protein [delta proteobacterium NaphS2] Length = 268 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 G+ VL A + + I+E I L++I+ L + G V Sbjct: 14 GLNVLELLAEQ-ESEMGLKTISERLNIPVPSLWRIMGVLKENGYV 57 >gi|282932547|ref|ZP_06337970.1| AraC-type DNA-binding protein [Lactobacillus jensenii 208-1] gi|281303327|gb|EFA95506.1| AraC-type DNA-binding protein [Lactobacillus jensenii 208-1] Length = 289 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 4 TKRTDYGIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +K+ Y + ++ Y A H+ +S++A + +L ++ Q L K + Sbjct: 175 SKKVKYASKDTQAGALMSYIASHHGQ-VTLSEMANEFGYQKNYLSRLCQKLFKQDFIH 231 >gi|217965164|ref|YP_002350842.1| transcriptional regulator [Listeria monocytogenes HCC23] gi|217334434|gb|ACK40228.1| transcriptional regulator [Listeria monocytogenes HCC23] gi|307570276|emb|CAR83455.1| transcriptional regulator, GntR family [Listeria monocytogenes L99] Length = 125 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + + L +AGI+ TVRG Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGTG 69 >gi|217077650|ref|YP_002335368.1| HTH domain superfamily [Thermosipho africanus TCF52B] gi|217037505|gb|ACJ76027.1| HTH domain superfamily [Thermosipho africanus TCF52B] Length = 59 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 17/37 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 P + +IAE + + K++ L K G +E+ Sbjct: 12 KEGKPMKAGEIAEKLGVDSKVVSKLISELKKEGKIES 48 >gi|297195659|ref|ZP_06913057.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718998|gb|EDY62906.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 121 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + IA+ +S+ + L+ L +AG++ + R Sbjct: 50 LRLFSKVASHPGGEACVCDIAD-VGVSQPTVSHHLKKLREAGLLTSER 96 >gi|11499892|ref|NP_071136.1| hypothetical protein AF2311 [Archaeoglobus fulgidus DSM 4304] gi|2648208|gb|AAB88945.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 49 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 P R IA+ + + KI++ L K G+V + Sbjct: 3 RAGKPVRPGDIAKETGLDSKEVSKIIKELRKEGLVHS 39 >gi|13472669|ref|NP_104236.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023416|dbj|BAB50022.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 281 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 16/36 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R + A +++IA +S ++L +I Q Sbjct: 181 RAKLVLASDLSRRWTLAEIAAEVGVSPVYLTQIFQQ 216 >gi|93006609|ref|YP_581046.1| IclR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394287|gb|ABE75562.1| transcriptional regulator, IclR family [Psychrobacter cryohalolentis K5] Length = 272 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 RVL + + P +S +AEA I ++++L+ L G V+ Sbjct: 29 RVLQIVEMLAKSQRPMSVSDLAEALDIPIPSMYRLLEQLQNLGFVQ 74 >gi|330719707|gb|EGG98245.1| Biotin-protein ligase / Biotin operon repressor [gamma proteobacterium IMCC2047] Length = 165 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 + + + ++++ +S ++K + L + G+ + V+G+ G RL D +++ Sbjct: 10 LSDGRFHSGEELSQGLGVSRTAIWKQISKLEQLGLQINAVKGK--GYRLADELDLLSLPS 67 Query: 78 VVK 80 + + Sbjct: 68 IYE 70 >gi|332285976|ref|YP_004417887.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330429929|gb|AEC21263.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 227 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 18/42 (42%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 LM AI I IA +S+ + + L L + G+V Sbjct: 30 LMSLAIAPGARIPIDAIARELNVSQTPVREALSRLEREGLVH 71 >gi|315223274|ref|ZP_07865135.1| primase 1 [Streptococcus anginosus F0211] gi|315187706|gb|EFU21460.1| primase 1 [Streptococcus anginosus F0211] Length = 497 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67 I E I E L K+L+ L K ++ GR GG+R+ Sbjct: 393 TTKKAIREELSIPERSLDKVLKVLKKEQKIFLKVKSGRGGGIRIA 437 >gi|313679243|ref|YP_004056982.1| heat-inducible transcription repressor hrca [Oceanithermus profundus DSM 14977] gi|313151958|gb|ADR35809.1| heat-inducible transcription repressor HrcA [Oceanithermus profundus DSM 14977] Length = 310 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + +L I P +AE +S + L L AG++E Sbjct: 9 LHLLTRAYIETGKPVPSRWLAERLGVSPATVRYDLADLEAAGLIE 53 >gi|309781432|ref|ZP_07676168.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] gi|308919845|gb|EFP65506.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] Length = 256 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 RVLM A + P ++ E + + L++ + L + G V G Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAG 71 >gi|296138499|ref|YP_003645742.1| hypothetical protein Tpau_0766 [Tsukamurella paurometabola DSM 20162] gi|296026633|gb|ADG77403.1| Helix-turn-helix type 11 domain protein [Tsukamurella paurometabola DSM 20162] Length = 303 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +QIAE +S + + ++ L AGI V T RGR GG+ L Sbjct: 17 GTMTAAQIAEELEVSTRTVLRDVEALSTAGIPVYTDRGRGGGISL 61 >gi|163790780|ref|ZP_02185206.1| CBS domain protein [Carnobacterium sp. AT7] gi|159873960|gb|EDP68038.1| CBS domain protein [Carnobacterium sp. AT7] Length = 443 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 14/123 (11%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ----ITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R+ R + +T + Sbjct: 18 GEKISVRSIAKNLSVSEGTAYRAIKEAQNNGLVSTIQ-RVGTIRIERKMKETFETLTYGE 76 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 VVK E +D L + + + +A +T S+ +V NR ++ Sbjct: 77 VVKIIEGDIL----GGEEGLDKDLSKF--IIGAMTE--DAMIRYITPGSL-MIVGNRENV 127 Query: 138 KKI 140 +K+ Sbjct: 128 QKL 130 >gi|241663977|ref|YP_002982337.1| IclR family transcriptional regulator [Ralstonia pickettii 12D] gi|240866004|gb|ACS63665.1| transcriptional regulator, IclR family [Ralstonia pickettii 12D] Length = 256 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 RVLM A + P ++ E + + L++ + L + G V G Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAG 71 >gi|254252804|ref|ZP_04946122.1| regulatory protein GntR [Burkholderia dolosa AUO158] gi|124895413|gb|EAY69293.1| regulatory protein GntR [Burkholderia dolosa AUO158] Length = 283 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70 D +++ A +S + + + + +G++ET G G L Sbjct: 65 RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRQPLGIDP 123 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 124 ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 169 >gi|194365492|ref|YP_002028102.1| ArsR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348296|gb|ACF51419.1| transcriptional regulator, ArsR family [Stenotrophomonas maltophilia R551-3] Length = 221 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 18/111 (16%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86 + ++AE +S + LQ L +AG+V+T R G L R D + +++ A Sbjct: 41 VERLAELTGLSVANTSQHLQQLRRAGLVQTRR--DGKRILYRSGDG-PLGNLMAAL---- 93 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 D + V+ ++ D L ++E L++ R ++ Sbjct: 94 ----------RDYADHQRSEMHDVIADSVLR-RDALDGLTVEQLLQQRDNV 133 >gi|86140214|ref|ZP_01058776.1| transcriptional regulator, AraC family protein [Roseobacter sp. MED193] gi|85823151|gb|EAQ43364.1| transcriptional regulator, AraC family protein [Roseobacter sp. MED193] Length = 277 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +RVL Y + + Q+AE +S ++ L + VR +RL R A Sbjct: 10 LRVLDYIHDNPAGDLSLDQLAEVAAMSRFHWHRVFHALTGETCAQAVRR----IRLHRAA 65 Query: 71 DQI-----TILDV 78 + ++ ++ Sbjct: 66 SDLLMTQSSLGEI 78 >gi|110634652|ref|YP_674860.1| IclR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285636|gb|ABG63695.1| transcriptional regulator, IclR family [Chelativorans sp. BNC1] Length = 520 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 G+R++ A D S++A + + ++L L + G V G RG RL Sbjct: 22 GLRLIEALAAGGD-LVSPSELAGRVKLDRAVVRRLLMTLDRFGYVTA--GVRG-YRLA 75 >gi|330468849|ref|YP_004406592.1| regulatory protein arsr [Verrucosispora maris AB-18-032] gi|328811820|gb|AEB45992.1| regulatory protein arsr [Verrucosispora maris AB-18-032] Length = 112 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A P IS +AE IS + K ++ L +AG+V T + Sbjct: 24 LARLGAAPATISDLAEPFAISLTGMKKHVRVLEEAGLVVTEK 65 >gi|326382886|ref|ZP_08204576.1| IclR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326198476|gb|EGD55660.1| IclR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 319 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L + A ++ ++ C +S+ I+ L AG V Sbjct: 27 VRILDFLASRPSEQFSLADLSRNCEVSKPTCLGIVSELCGAGYVT 71 >gi|307545993|ref|YP_003898472.1| GntR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307218017|emb|CBV43287.1| transcriptional regulator, GntR family [Halomonas elongata DSM 2581] Length = 244 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC------RPADQI---TILDV 78 S++ +A +S + + + L G+VET RG G L RPA I T+ D+ Sbjct: 45 SELCDAFGVSRTVIREAITHLKSLGLVETRRGV-GTTVLRTDVVEPRPAVHISPTTVEDI 103 Query: 79 VKATE 83 ++ E Sbjct: 104 LQVLE 108 >gi|300785123|ref|YP_003765414.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794637|gb|ADJ45012.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 237 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 + L A + P+ + Q+A+A ++ L L L AG+V GR R+ R Sbjct: 28 LTALQVLAA--EGPHTMVQLADALGVTAPRLGNHLARLRAAGLVTVEHTGRHALYRVGRE 85 >gi|302554301|ref|ZP_07306643.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302471919|gb|EFL35012.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 325 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++AE +S +++ ++ L AG+ V RGR GG+ L Sbjct: 17 GRVPARELAERLEVSVRTVYRDVESLSAAGVPVYAERGRHGGIEL 61 >gi|254511554|ref|ZP_05123621.1| regulatory protein GntR, HTH [Rhodobacteraceae bacterium KLH11] gi|221535265|gb|EEE38253.1| regulatory protein GntR, HTH [Rhodobacteraceae bacterium KLH11] Length = 243 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ S++A+ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSESELADQFQVSRPTVREALKRLAAQSLIRTQRGATGG 73 >gi|213029568|ref|ZP_03344015.1| putative solute-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 146 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|195978006|ref|YP_002123250.1| transcriptional regulator GntR family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868664|ref|YP_002744612.1| GntR family regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|195974711|gb|ACG62237.1| transcriptional regulator GntR family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701940|emb|CAW99468.1| GntR family regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 123 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +++ D + + AE ++ + + L L + GIV + R Sbjct: 18 HIMLQIVSQEIKSGDQLPTVREYAEIAGVNPNTMQRALTELEREGIVYSQR 68 >gi|167836515|ref|ZP_02463398.1| transcriptional regulator, IclR family protein [Burkholderia thailandensis MSMB43] Length = 248 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 VL AI +D P ++AE I + + +I LV AG + Sbjct: 3 VLRRIAI-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 43 >gi|160901654|ref|YP_001567235.1| GntR family transcriptional regulator [Petrotoga mobilis SJ95] gi|160359298|gb|ABX30912.1| transcriptional regulator, GntR family [Petrotoga mobilis SJ95] Length = 234 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +AE ++ + K+L L + G +++ +GR G + Sbjct: 36 DLAEEFHVTRTTIRKVLSLLKQQGTIKSYQGR--GYK 70 >gi|118471555|ref|YP_885511.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118172842|gb|ABK73738.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 239 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +++ +S L + ++ L + G+VE GR GG Sbjct: 42 RDLSQKLGVSRTTLRQAIRTLEERGVVEVRLGRGGG 77 >gi|114571380|ref|YP_758060.1| ArsR family transcriptional regulator [Maricaulis maris MCS10] gi|114341842|gb|ABI67122.1| transcriptional regulator, ArsR family [Maricaulis maris MCS10] Length = 110 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 16/42 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 P ++A+ I + LQ L +AG++ R Sbjct: 25 LCDQAPEPASAGELAQGFDIPPSTMTGHLQALERAGLIRAER 66 >gi|317486282|ref|ZP_07945114.1| HTH domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922452|gb|EFV43706.1| HTH domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 307 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 ++AE C +S + + L L AGI V + RG GG+ L + Sbjct: 20 TAKELAEHCSVSVRTIQRDLDALSLAGIPVFSSRGYGGGIGLLKE 64 >gi|311104370|ref|YP_003977223.1| heat-inducible transcription repressor HrcA [Achromobacter xylosoxidans A8] gi|310759059|gb|ADP14508.1| heat-inducible transcription repressor HrcA [Achromobacter xylosoxidans A8] Length = 334 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 21/46 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ L+ I + P +++ +S + ++ L + G++ + Sbjct: 9 LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMSDLEELGLIHS 54 >gi|308450583|ref|XP_003088350.1| hypothetical protein CRE_18359 [Caenorhabditis remanei] gi|308247920|gb|EFO91872.1| hypothetical protein CRE_18359 [Caenorhabditis remanei] Length = 262 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ I ++ + + I E +S+ ++ L+ LV A I++ + G Sbjct: 1 MALSSFGK--ILTVLDLFSVSRPVINVDVICEELGLSKPTSYRYLKELVSADILQRLNGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I ++D + + T+ +++ F + C L + L Sbjct: 59 SGDYTLGP---KIAVMDYISRTTDPLVQISKPFMQEISE--RTELCCLLTHLND 107 >gi|332652949|ref|ZP_08418694.1| transcriptional regulator, DeoR family [Ruminococcaceae bacterium D16] gi|332518095|gb|EGJ47698.1| transcriptional regulator, DeoR family [Ruminococcaceae bacterium D16] Length = 302 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 ++AE +S + + ++ L +AGI + T +G GG+ Sbjct: 17 EKVTAPELAEQFEVSRRTIQRDIESLCRAGIPISTAQGAGGGI 59 >gi|303328235|ref|ZP_07358673.1| transcriptional regulator, DeoR family [Desulfovibrio sp. 3_1_syn3] gi|302861565|gb|EFL84501.1| transcriptional regulator, DeoR family [Desulfovibrio sp. 3_1_syn3] Length = 303 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 N ++AE C +S + + L L AGI + + RG GGV L + Sbjct: 15 NGSYTTAKELAEYCSVSVRTIQRDLDALSLAGIPICSSRGYGGGVGLLKE 64 >gi|291541653|emb|CBL14763.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Ruminococcus bromii L2-63] Length = 322 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++ D S+I+E +S ++K + L + G +++V R G RL Sbjct: 5 IIELLTKTDGYVSGSEISEQLGVSRQAVWKAINNLKEQGYKIDSVTNR--GYRL 56 >gi|290508420|ref|ZP_06547791.1| GntR family transcriptional regulator, glv operon transcriptional regulator [Klebsiella sp. 1_1_55] gi|289777814|gb|EFD85811.1| GntR family transcriptional regulator, glv operon transcriptional regulator [Klebsiella sp. 1_1_55] Length = 237 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE +S L K L+ L + G++E G Sbjct: 21 KELAELYDVSRNTLRKALKTLEEDGLIERRHGSG 54 >gi|323339640|ref|ZP_08079912.1| iron-dependent repressor [Lactobacillus ruminis ATCC 25644] gi|323092936|gb|EFZ35536.1| iron-dependent repressor [Lactobacillus ruminis ATCC 25644] Length = 215 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 K+ DY ++++ QIA + I+ + +++ LVK G+V G+ Sbjct: 4 KKEDY-LKIIFELGGRK-KKVSNKQIAMSLNIAAGSVTEMVSKLVKEGLVNHT--PYAGI 59 Query: 65 RLCRPADQI 73 L + +I Sbjct: 60 SLTKKGTEI 68 >gi|218682765|ref|ZP_03530366.1| ArsR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 117 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H + ++A + + + L L +AG+V + R Sbjct: 25 LVRHEPHGIPAGELARLIDVPQNTMSAHLATLSRAGLVTSER 66 >gi|148978698|ref|ZP_01815101.1| predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation [Vibrionales bacterium SWAT-3] gi|145962236|gb|EDK27519.1| predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation [Vibrionales bacterium SWAT-3] Length = 231 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 + DY SQ+AE ++ L + + LV G+++ +G+ G + R + + Sbjct: 20 VPGDYLPPESQLAERFSVNRHTLRRAVDELVSTGLIQRHQGK--GNMVIRQPSEYRL 74 >gi|57640769|ref|YP_183247.1| Lrp/AsnC family transcription regulator [Thermococcus kodakarensis KOD1] gi|57159093|dbj|BAD85023.1| transcription regulator, Lrp/AsnC family [Thermococcus kodakarensis KOD1] Length = 192 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 L+Y + +D IS++AE +S + L+ L K G+++ G + + Sbjct: 10 LIYL-LMDDARLSISELAERLGVSRPTVRARLEKLEKEGVIQ-------GYTIKLNPE 59 >gi|120554772|ref|YP_959123.1| CRP/FNR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120324621|gb|ABM18936.1| transcriptional regulator, Crp/Fnr family [Marinobacter aquaeolei VT8] Length = 250 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVET 56 P S IA+A +S + + ++ Q L G+V + Sbjct: 177 PLTQSLIADALGLSAVHVNRVFQELKDEGLVSS 209 >gi|328881425|emb|CCA54664.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae ATCC 10712] Length = 328 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L + G V G GG +L A+ Sbjct: 22 SGADLADRLGVTPRTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 68 >gi|297198000|ref|ZP_06915397.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146960|gb|EDY59031.2| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 265 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + D I V+ A + ++A + + F++L L G+VE G RG Sbjct: 19 QSVDRAIHVMEILAQRGEAGVS--EVAAEIDVHKSTAFRLLGALEARGLVE-QAGERGKY 75 Query: 65 RLC 67 RL Sbjct: 76 RLG 78 >gi|290476854|ref|YP_003469765.1| transcriptional regulator, ArsR family/rhodanese-like domain protein [Xenorhabdus bovienii SS-2004] gi|289176198|emb|CBJ83003.1| Transcriptional regulator, ArsR family/rhodanese-like domain protein [Xenorhabdus bovienii SS-2004] Length = 227 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 20/115 (17%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKA 81 + + + +AE +S + LQ L +AG V+T R G+ R+ + +++ A Sbjct: 36 HESSVEHLAEISGLSITNTSQHLQQLRRAGFVQTRREGKHVLYRIGDGP----VANILAA 91 Query: 82 TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136 + + + V S + + L SIE L+R + Sbjct: 92 LRDYLA------YQQTEIQRVVSDSIHHP---------EHLEGVSIEELLRRQEE 131 >gi|255319731|ref|ZP_05360939.1| putative transcriptional regulator [Acinetobacter radioresistens SK82] gi|262379988|ref|ZP_06073143.1| transcriptional regulator [Acinetobacter radioresistens SH164] gi|255303260|gb|EET82469.1| putative transcriptional regulator [Acinetobacter radioresistens SK82] gi|262298182|gb|EEY86096.1| transcriptional regulator [Acinetobacter radioresistens SH164] Length = 256 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L+ I ++ + + I E +S+ ++ L+ LV + I++ + G Sbjct: 1 MALSSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSSDILQRISGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I +LD + + T+ + F S + C L + L + Sbjct: 59 SGDYTLG---SKIAVLDYISRTTDPVVQASSPFMSEIAE--RTELCCLLTHLNQ 107 >gi|284028518|ref|YP_003378449.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283807811|gb|ADB29650.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 323 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 + L+ + + P ++ +++ + + L +AGI +E+ GR GG L R Sbjct: 14 KALLALELIQNVPGITGDRLGRRLGVTDRAARRYVGILREAGIPIESTPGRYGGYTLGR 72 >gi|225403114|ref|ZP_03760411.1| hypothetical protein CLOSTASPAR_04442 [Clostridium asparagiforme DSM 15981] gi|225043251|gb|EEG53497.1| hypothetical protein CLOSTASPAR_04442 [Clostridium asparagiforme DSM 15981] Length = 429 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R + Y +H P + QIAE +S +L + Sbjct: 330 RAVTYIRLHLAEPLTLKQIAEGIRVSPSYLSRTFNR 365 >gi|261407734|ref|YP_003243975.1| ROK family protein [Paenibacillus sp. Y412MC10] gi|261284197|gb|ACX66168.1| ROK family protein [Paenibacillus sp. Y412MC10] Length = 386 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVRLCRPADQI 73 I N+ P + IA+ +S + +I+ L + G V + GR R + I Sbjct: 21 IKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAGRG------RKSSLI 74 Query: 74 TILD 77 +LD Sbjct: 75 RLLD 78 >gi|183980844|ref|YP_001849135.1| GntR family transcriptional regulator [Mycobacterium marinum M] gi|183174170|gb|ACC39280.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium marinum M] Length = 245 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 ++AE ++ L + L L + G++ET +G + R +T VV+A Sbjct: 42 RELAEQLGVNRTSLRQGLARLQQMGLIETRQGSG---NVVRDPQSLTHPAVVEAL 93 >gi|159046368|ref|YP_001542039.1| PaaX family transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157914127|gb|ABV95558.1| transcriptional regulator PaaX [Dinoroseobacter shibae DFL 12] Length = 264 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 4/56 (7%) Query: 16 YCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67 A D + QI+ I + L L K G +++ R GR L Sbjct: 31 DLAQAPDARISAALLRQISAQIGIRPEAMRVALHRLRKDGWIDSARAGRTSAYFLT 86 >gi|118619656|ref|YP_907988.1| GntR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118571766|gb|ABL06517.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium ulcerans Agy99] Length = 245 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 ++AE ++ L + L L + G++ET +G + R +T VV+A Sbjct: 42 RELAEQLGVNRTSLRQGLARLQQMGLIETRQGSG---NVVRDPQSLTHPAVVEAL 93 >gi|260425307|ref|ZP_05779287.1| transcriptional regulator, Crp/Fnr family [Citreicella sp. SE45] gi|260423247|gb|EEX16497.1| transcriptional regulator, Crp/Fnr family [Citreicella sp. SE45] Length = 242 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Query: 13 VLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ + Y ++Q +A+A +S + + ++L+ L +AG+V G G Sbjct: 165 ALVGLGSKDGYACPLTQYLLADALGLSAVHVNRVLRQLREAGMVTFRDGFVG 216 >gi|297562967|ref|YP_003681941.1| IclR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847415|gb|ADH69435.1| transcriptional regulator, IclR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 260 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 A + D P + ++E I L+ ++Q LV G V + Sbjct: 26 LARYRD-PVTLRTLSEEMGIPRSSLYALVQTLVNRGWVRS 64 >gi|182437899|ref|YP_001825618.1| ArsR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466415|dbj|BAG20935.1| putative ArsR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 372 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P ++A++ I+ + + L L KAG+V T R RG L Sbjct: 310 SPYTTGELADSNGITSPEVSRHLSVLKKAGLVTTRR--RGRYVL 351 >gi|209550993|ref|YP_002282910.1| AraC family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536749|gb|ACI56684.1| transcriptional regulator, AraC family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 279 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69 R + + H + + +I+EA +S L ++ G+V ++ G G RL R Sbjct: 6 RAIWFIESHFESDLSLEEISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59 >gi|311743090|ref|ZP_07716898.1| transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311313770|gb|EFQ83679.1| transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 169 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +L+ + + + R++++A+A S + + L +AG V VRG Sbjct: 61 ILVRLSEADGWSIRMAELADAVGYSRSRVTHTVARLERAGWV--VRG 105 >gi|311106034|ref|YP_003978887.1| transcriptional regulator family protein 15 [Achromobacter xylosoxidans A8] gi|310760723|gb|ADP16172.1| bacterial transcriptional regulator family protein 15 [Achromobacter xylosoxidans A8] Length = 248 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RVL A +D P I+ +AE +++ L++ + L + G V G G Sbjct: 14 RVLYVLATLARHDGPLSIAALAEQTGLAQSTLYRQVALLKRWGFVAEHDGEYG 66 >gi|259418984|ref|ZP_05742901.1| Helix-turn-helix domain containing protein, type 11 [Silicibacter sp. TrichCH4B] gi|259345206|gb|EEW57060.1| Helix-turn-helix domain containing protein, type 11 [Silicibacter sp. TrichCH4B] Length = 239 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL 66 + ++ +A+ S + + L L G V + GR GG++L Sbjct: 14 LRRTGATTVADLAQEVGASRRTILRDLNSLRDEGFVIHSEPGRGGGLQL 62 >gi|251787929|ref|YP_003002650.1| AraC family transcriptional regulator [Dickeya zeae Ech1591] gi|247536550|gb|ACT05171.1| transcriptional regulator, AraC family [Dickeya zeae Ech1591] Length = 401 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 I+ L+Y H + ++AE IS L +L+ Sbjct: 291 IKALLYLGEHFQREVTLIELAENSHISPSHLSYLLK 326 >gi|167462504|ref|ZP_02327593.1| transcriptional regulator, MarR family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383827|ref|ZP_08057574.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151643|gb|EFX44716.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 153 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 AIH+ P ++ ++ A I + K + L K G V+ V G+ + +I + D Sbjct: 40 AIHDLGPTTVTNLSNALIIKPPTVTKTINRLEKLGYVKRVAGKN------KKEREIALTD 93 Query: 78 VVK 80 + + Sbjct: 94 LSR 96 >gi|156935001|ref|YP_001438917.1| hypothetical protein ESA_02852 [Cronobacter sakazakii ATCC BAA-894] gi|156533255|gb|ABU78081.1| hypothetical protein ESA_02852 [Cronobacter sakazakii ATCC BAA-894] Length = 576 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 IS++A C SE + +L+ L + G + ++ RG+RG Sbjct: 24 VTISELAVRCFCSERHMRTLLRQLEQHGWLRWRAQSGRGKRG 65 >gi|119897461|ref|YP_932674.1| L-lactate dehydrogenase operon regulatory protein [Azoarcus sp. BH72] gi|119669874|emb|CAL93787.1| probable L-lactate dehydrogenase operon regulatory protein [Azoarcus sp. BH72] Length = 260 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R+L D ++A +S L + +Q LV G++ + +G Sbjct: 22 RILDGVLKPGDRLQPERELAAELGVSRPSLREAIQKLVSKGLLHSRQGGG 71 >gi|108758048|ref|YP_633780.1| YihY family protein [Myxococcus xanthus DK 1622] gi|108461928|gb|ABF87113.1| YihY family protein [Myxococcus xanthus DK 1622] Length = 461 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 17 CAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 A + P ++A + E + +++ +V A ++E R R+GG+R + +T+ Sbjct: 326 LAWVDGLPPPSPRELATRLRVPESLVHEVVDRMVTAELLE--RLRKGGLRPAKDPAVLTL 383 Query: 76 LDVVKATEE 84 D A Sbjct: 384 ADTTLAVHG 392 >gi|83720359|ref|YP_442399.1| IclR family transcriptional regulator [Burkholderia thailandensis E264] gi|167581320|ref|ZP_02374194.1| transcriptional regulator, IclR family protein [Burkholderia thailandensis TXDOH] gi|167619402|ref|ZP_02388033.1| transcriptional regulator, IclR family protein [Burkholderia thailandensis Bt4] gi|257138601|ref|ZP_05586863.1| IclR family transcriptional regulator [Burkholderia thailandensis E264] gi|83654184|gb|ABC38247.1| transcriptional regulator, IclR family [Burkholderia thailandensis E264] Length = 270 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|304405516|ref|ZP_07387175.1| transcriptional regulator, ArsR family [Paenibacillus curdlanolyticus YK9] gi|304345555|gb|EFM11390.1| transcriptional regulator, ArsR family [Paenibacillus curdlanolyticus YK9] Length = 117 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 D P + +IA+ +++ + K L+ L AG+VE Sbjct: 22 DGPLPVGEIADRLELNQPQVSKHLRVLTSAGLVE 55 >gi|326778535|ref|ZP_08237800.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1] gi|326658868|gb|EGE43714.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1] Length = 370 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P ++A++ I+ + + L L KAG+V T R RG L Sbjct: 308 SPYTTGELADSNGITSPEVSRHLSVLKKAGLVTTRR--RGRYVL 349 >gi|296159029|ref|ZP_06841856.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gi|295890590|gb|EFG70381.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 233 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 ++ IAE +S + + L+ L K G+V+ GR L P + + D Sbjct: 30 SLAPGTRLTQEDIAEQLSVSRSPVLQALRLLKKDGLVQDAPGRG---LLVAPLEASALAD 86 Query: 78 VVKA 81 + + Sbjct: 87 LYEI 90 >gi|293399760|ref|ZP_06643906.1| transcriptional regulator, GntR family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306160|gb|EFE47403.1| transcriptional regulator, GntR family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 124 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + +A ++ + K Q L G + TV+G+ Sbjct: 33 NDKLPSVRSLASQLGVNPNTVAKAYQELETQGYIYTVKGKG 73 >gi|284041813|ref|YP_003392153.1| GntR family transcriptional regulator with aminotransferase domain [Conexibacter woesei DSM 14684] gi|283946034|gb|ADB48778.1| transcriptional regulator, GntR family with aminotransferase domain [Conexibacter woesei DSM 14684] Length = 482 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ E +S + + + + LV G+V + G Sbjct: 24 GEKLPSSRELTERHHVSPVTVSRAIAALVAEGLVVSRPGAG 64 >gi|260427481|ref|ZP_05781460.1| ROK domain protein [Citreicella sp. SE45] gi|260421973|gb|EEX15224.1| ROK domain protein [Citreicella sp. SE45] Length = 390 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 23/92 (25%) Query: 10 GIRV----LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRG 62 G+R L+ + ++IA+ +S + IL+ L G + RGR G Sbjct: 17 GVRAHNERLILSLVRRGGGLPGAEIAKLTALSPQTVSNILRKLENDGFLRRGAPQRGRVG 76 Query: 63 ----------------GVRLCRPADQITILDV 78 G++L R + + +LD+ Sbjct: 77 KPSIPMQIDPDGALSFGMKLGRRSADLAVLDL 108 >gi|257869831|ref|ZP_05649484.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257803995|gb|EEV32817.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 253 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Query: 12 RVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +L Y H D + +IA+ S L ++ Q L +G +E Sbjct: 30 HILTYLVSHTDKIEGVPLRKIAQELYTSPATLVRLAQKLGFSGYLE 75 >gi|290894441|ref|ZP_06557401.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556002|gb|EFD89556.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 125 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + + L +AGI+ TVRG Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGTG 69 >gi|253826971|ref|ZP_04869856.1| putative transcriptional regulator [Helicobacter canadensis MIT 98-5491] gi|253510377|gb|EES89036.1| putative transcriptional regulator [Helicobacter canadensis MIT 98-5491] Length = 189 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 QIA+ S L ++L+ + G+++T +G+ Sbjct: 151 RQIAQKLNTSPESLSRVLREFKEEGLIKTQKGK 183 >gi|255283824|ref|ZP_05348379.1| putative response regulator receiver domain protein [Bryantella formatexigens DSM 14469] gi|255265707|gb|EET58912.1| putative response regulator receiver domain protein [Bryantella formatexigens DSM 14469] Length = 538 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 14/38 (36%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 Y A + D + A IS +L ++ + G Sbjct: 440 YIASNIDKRLTLHDTALTFNISPNYLSQLFKKYRNVGF 477 >gi|224419256|ref|ZP_03657262.1| hypothetical protein HcanM9_08288 [Helicobacter canadensis MIT 98-5491] Length = 145 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 QIA+ S L ++L+ + G+++T +G+ Sbjct: 107 RQIAQKLNTSPESLSRVLREFKEEGLIKTQKGK 139 >gi|146342145|ref|YP_001207193.1| putative GntR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194951|emb|CAL78976.1| putative transcriptional regulator, GntR Family [Bradyrhizobium sp. ORS278] Length = 228 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 9 YG-IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y +R L+ P +QIA A +S + + + L G+VE Sbjct: 17 YADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSDEGLVE 65 >gi|83593957|ref|YP_427709.1| tRNA-processing RNAse BN [Rhodospirillum rubrum ATCC 11170] gi|123526051|sp|Q2RR23|Y2625_RHORT RecName: Full=UPF0761 membrane protein Rru_A2625 gi|83576871|gb|ABC23422.1| tRNA-processing RNAse BN [Rhodospirillum rubrum ATCC 11170] Length = 440 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 14/93 (15%) Query: 2 HLTKRT--------DYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLV 49 LT+ + +++ A ++ + +L+ L Sbjct: 300 RLTRAGQDERAARLRIAVEIMVAAARAYGEGQGDGASRRALSALTATPDRRQAGVLRDLD 359 Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 KAG++ +R G V R +IT+ +++ A Sbjct: 360 KAGLL--IRDEDGAVLPGRDPRRITLAEILHAL 390 >gi|53719905|ref|YP_108891.1| IclR regulatory protein [Burkholderia pseudomallei K96243] gi|76810367|ref|YP_334125.1| IclR regulatory protein [Burkholderia pseudomallei 1710b] gi|126441885|ref|YP_001059632.1| IclR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126453545|ref|YP_001066914.1| IclR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134277854|ref|ZP_01764569.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] gi|167720360|ref|ZP_02403596.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei DM98] gi|167739352|ref|ZP_02412126.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei 14] gi|167816567|ref|ZP_02448247.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei 91] gi|167824962|ref|ZP_02456433.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei 9] gi|167846480|ref|ZP_02471988.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei B7210] gi|167895057|ref|ZP_02482459.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei 7894] gi|167903444|ref|ZP_02490649.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei NCTC 13177] gi|167911693|ref|ZP_02498784.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei 112] gi|167919693|ref|ZP_02506784.1| transcriptional regulator, IclR family protein [Burkholderia pseudomallei BCC215] gi|217421127|ref|ZP_03452632.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] gi|226195460|ref|ZP_03791048.1| transcriptional regulator, IclR family [Burkholderia pseudomallei Pakistan 9] gi|237813025|ref|YP_002897476.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] gi|242316507|ref|ZP_04815523.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1106b] gi|254184360|ref|ZP_04890950.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gi|254191394|ref|ZP_04897898.1| transcriptional regulator, IclR family [Burkholderia pseudomallei Pasteur 52237] gi|254195932|ref|ZP_04902358.1| transcriptional regulator, IclR family [Burkholderia pseudomallei S13] gi|254258677|ref|ZP_04949731.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1710a] gi|254297023|ref|ZP_04964476.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 406e] gi|52210319|emb|CAH36298.1| IclR regulatory protein [Burkholderia pseudomallei K96243] gi|76579820|gb|ABA49295.1| IclR regulatory protein [Burkholderia pseudomallei 1710b] gi|126221378|gb|ABN84884.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 668] gi|126227187|gb|ABN90727.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1106a] gi|134251504|gb|EBA51583.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] gi|157806870|gb|EDO84040.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 406e] gi|157939066|gb|EDO94736.1| transcriptional regulator, IclR family [Burkholderia pseudomallei Pasteur 52237] gi|169652677|gb|EDS85370.1| transcriptional regulator, IclR family [Burkholderia pseudomallei S13] gi|184214891|gb|EDU11934.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gi|217396539|gb|EEC36556.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] gi|225932420|gb|EEH28419.1| transcriptional regulator, IclR family [Burkholderia pseudomallei Pakistan 9] gi|237504046|gb|ACQ96364.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] gi|242139746|gb|EES26148.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1106b] gi|254217366|gb|EET06750.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1710a] Length = 270 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|298249646|ref|ZP_06973450.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297547650|gb|EFH81517.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 336 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L++ + ++AE +SE L++ + L AG+ + G RGG L Sbjct: 15 LLALVFL-LQRYPHLTARELAERLQVSERTLYRDINDLSLAGVPIYGEGGPRGGYTL 70 >gi|296814872|ref|XP_002847773.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238840798|gb|EEQ30460.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 750 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++++ + YP RI A++ S + +I L K G ++ G + Sbjct: 491 RQALKIII----EDGYPLRIRDFAQSLHCSGNEVVQITDLLRKNGFLQATPGSK 540 >gi|224583984|ref|YP_002637782.1| regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468511|gb|ACN46341.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 228 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R +++C I P +I+ +S + + L + G+++ +R +RG + Sbjct: 23 RDIVHCLIPPGTPLSEKEISTRFNVSRQPVREAFIKLAENGLIQ-IRPQRGSYV-----N 76 Query: 72 QITILDVVKATEESFFVAECFASHKIDC 99 +I++ V CF I+C Sbjct: 77 KISLSQV---------QNGCFVRQAIEC 95 >gi|220919124|ref|YP_002494428.1| Helix-turn-helix type 11 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956978|gb|ACL67362.1| Helix-turn-helix type 11 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 221 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +QIAE ++ +++ L L A + + +GR GG L R Sbjct: 21 VTAAQIAERFGVTLRTVYRDLDALRSADLPLRAEQGRGGGYALDR 65 >gi|118588112|ref|ZP_01545522.1| hypothetical protein SIAM614_11063 [Stappia aggregata IAM 12614] gi|118439734|gb|EAV46365.1| hypothetical protein SIAM614_11063 [Stappia aggregata IAM 12614] Length = 317 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGGVR 65 G+ +M ++ +I+ + + + ++L+ L G + R GR G+ Sbjct: 39 GVHAMMEIGLNPG--ITAKEISARLKLEKSTISRLLKSLEARGDIRQTRSDSDGRSFGLT 96 Query: 66 LCRPAD 71 L Sbjct: 97 LTEAGK 102 >gi|15827363|ref|NP_301626.1| ArsR family transcriptional regulator [Mycobacterium leprae TN] gi|13092912|emb|CAC30335.1| putative ArsR-family transcriptional regulator [Mycobacterium leprae] Length = 140 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67 +R+ + + + ++ +A I + + + L+ L AGIV R GR RL Sbjct: 64 VRIAIVLQLRESQRC-VHELVDALGIPQPLVSQHLKILKGAGIVAGERSGREMLYRLA 120 >gi|15669837|ref|NP_248651.1| repressor protein [Methanocaldococcus jannaschii DSM 2661] gi|42559941|sp|Q59035|Y1641_METJA RecName: Full=Uncharacterized protein MJ1641 gi|1500541|gb|AAB99661.1| repressor protein [Methanocaldococcus jannaschii DSM 2661] Length = 287 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 IRV++ + P +IAE IS ++ K+L+PL+ IV Sbjct: 19 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDEKIVR 58 >gi|332285187|ref|YP_004417098.1| heat-inducible transcription repressor [Pusillimonas sp. T7-7] gi|330429140|gb|AEC20474.1| heat-inducible transcription repressor [Pusillimonas sp. T7-7] Length = 335 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG------GV 64 ++ L+ I + P +++ +S + ++ L G++ + G G Sbjct: 9 LKALIEKYIADGQPVGSRTLSKMFDLSPATIRNVMADLEDLGLIHSPHTSAGRIPTPKGY 68 Query: 65 RL 66 RL Sbjct: 69 RL 70 >gi|329113619|ref|ZP_08242398.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] gi|326697065|gb|EGE48727.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] Length = 456 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +A+ IS + K L + G+V +V+GR Sbjct: 38 GDRLPAHRDLADRLGISVGTVTKAYNVLERRGLVRSVKGRG 78 >gi|317404840|gb|EFV85213.1| ArsR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 246 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 8/73 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRLCRPA 70 R M C + + +++A A I Q L + G+VE +G+ RL Sbjct: 22 RARMLCVLLDGRARTATELAAAADIGASTASSHFQRLREQGLVEQAAQGKHRYYRLAN-- 79 Query: 71 DQITILDVVKATE 83 +V +A E Sbjct: 80 -----AEVARALE 87 >gi|311067742|ref|YP_003972665.1| hypothetical protein BATR1942_03900 [Bacillus atrophaeus 1942] gi|310868259|gb|ADP31734.1| hypothetical protein BATR1942_03900 [Bacillus atrophaeus 1942] Length = 278 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 P + ++A+ +SE + + L L K G + R G Sbjct: 56 KPLKAKEMADVFGVSEKTVRRWLDQLEKNGYIMVRRAPYG 95 >gi|302331698|gb|ADL21892.1| Putative MarR-family transcriptional regulator [Corynebacterium pseudotuberculosis 1002] Length = 153 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + ++ A N P RIS IA+A I L L K GIVE +R Sbjct: 38 LTIMTRLA--NTGPARISHIAQAEGIRMPTASNALHHLEKRGIVERIR 83 >gi|300724726|ref|YP_003714051.1| SOS response transcriptional repressor [Xenorhabdus nematophila ATCC 19061] gi|297631268|emb|CBJ91963.1| transcriptional repressor for SOS response (signal peptidase of LexA family) [Xenorhabdus nematophila ATCC 19061] Length = 205 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 20 HNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 P ++IA S + L+ L + G++E + G G+RL R A+ Sbjct: 21 QTGMPPTRAEIAARLGFRSPNAAEEHLKALARKGVIEIISGASRGIRLLREAE 73 >gi|297561848|ref|YP_003680822.1| hypothetical protein Ndas_2906 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846296|gb|ADH68316.1| Helix-turn-helix type 11 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 334 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++ E +S L + ++ L VE G GG RL Sbjct: 41 SGAELTERLGVSARTLRRDVERLRGLDYQVEGTPGVAGGYRLA 83 >gi|293606701|ref|ZP_06689055.1| regulatory protein [Achromobacter piechaudii ATCC 43553] gi|292814914|gb|EFF74041.1| regulatory protein [Achromobacter piechaudii ATCC 43553] Length = 271 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81 ++AE +S + ++ Q LV +G +E RG R RL P +++ ++A Sbjct: 46 ELAERTGLSAATVSRLTQTLVTSGFLEYERGARA-YRLAAPV--LSLGHAMRA 95 >gi|284032528|ref|YP_003382459.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283811821|gb|ADB33660.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 317 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++A +S L ++ L G VE G GG RL Sbjct: 25 ELAGRLGVSTRTLRADVEKLRGLGYPVEARSGVAGGYRLG 64 >gi|167563364|ref|ZP_02356280.1| transcriptional regulator, IclR family protein [Burkholderia oklahomensis EO147] gi|167570534|ref|ZP_02363408.1| transcriptional regulator, IclR family protein [Burkholderia oklahomensis C6786] Length = 270 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|118463919|ref|YP_881044.1| GntR family transcriptional regulator [Mycobacterium avium 104] gi|118165206|gb|ABK66103.1| regulatory protein GntR, HTH [Mycobacterium avium 104] Length = 246 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 14/68 (20%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73 S++ E +S L + + L ++ RG RGG R+ RP + + Sbjct: 38 SELMERFGVSRPTLREAFRVLESESLIVVQRGVRGGARVTRPRRETLARYAGLILEYEGV 97 Query: 74 TILDVVKA 81 T+ DV A Sbjct: 98 TLKDVYDA 105 >gi|81330309|ref|YP_398701.1| replication protein [Enterococcus faecium] gi|80751071|dbj|BAE48143.1| replication protein [Enterococcus faecium] Length = 533 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRG 62 + I+E I L IL+ L A I++T RGR G Sbjct: 418 VSMGTISEETQIPVSTLKVILKELRTANTVILQTSRGRYG 457 >gi|145222120|ref|YP_001132798.1| regulatory protein, IclR [Mycobacterium gilvum PYR-GCK] gi|145214606|gb|ABP44010.1| regulatory protein, IclR [Mycobacterium gilvum PYR-GCK] Length = 302 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 16/123 (13%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 +++L + A +S +A +S+ I+ L +AG + VR RL Sbjct: 18 VQILDFLASRPTERYGVSDLARRVGLSKPTCLGIVTSLTEAGYL--VRDPADKTYRLG-- 73 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 IT+ +A +ES V+ H L G T+ L ++ + ++ Sbjct: 74 PSLITLGH--RA-QESMRVSPAARDHLR--RLSARYGATAALSAVVD------DRITLLD 122 Query: 130 LVR 132 LV Sbjct: 123 LVA 125 >gi|118579093|ref|YP_900343.1| biotin--acetyl-CoA-carboxylase ligase [Pelobacter propionicus DSM 2379] gi|118501803|gb|ABK98285.1| biotin--acetyl-CoA-carboxylase ligase [Pelobacter propionicus DSM 2379] Length = 324 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPAD 71 ++ D I+ +S ++K + L KAG V E V R G +L D Sbjct: 6 AILRLFREQDGFVSGEMISRELHVSRTAIWKQINALRKAGYVIEAVPSR--GYQLLSAPD 63 Query: 72 QITILDVVKATE 83 ++ ++ + Sbjct: 64 LLSSAEIAVQLD 75 >gi|158315338|ref|YP_001507846.1| MarR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110743|gb|ABW12940.1| transcriptional regulator, MarR family [Frankia sp. EAN1pec] Length = 146 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+ + A+H P +S +A A +++ + + L+ L + V R GR L PA Sbjct: 64 RLAILLAVHYAGPISVSDLATAVGMNDAAVSQALRVLRQQNAVLAERDGRIIRYSLADPA 123 >gi|332366529|gb|EGJ44275.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK1059] Length = 311 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ +S ++K ++ L K GI +E+V+ R G RL Sbjct: 9 DILSQADDYVNGEKIAQELGVSRTSIWKAIKKLEKEGIQIESVKNR--GYRLT 59 >gi|330967711|gb|EGH67971.1| GntR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 171 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATVADVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|332716577|ref|YP_004444043.1| transcriptional regulator, GntR family [Agrobacterium sp. H13-3] gi|325063262|gb|ADY66952.1| transcriptional regulator, GntR family [Agrobacterium sp. H13-3] Length = 235 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A D ++A +S + + L+ L + G + + RG Sbjct: 28 AYKPDERLPTEHELAMEFEVSRPVVREALRRLREQGFIYSRRGSG 72 >gi|284167318|ref|YP_003405596.1| TrmB family transcriptional regulator [Haloterrigena turkmenica DSM 5511] gi|284016973|gb|ADB62923.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM 5511] Length = 742 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 22/41 (53%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +Y A+ + + ++EA + + ++ I++ L + G VE Sbjct: 29 VYLALVQNGKQSMRDLSEASDVPKQRVYDIVEELREQGFVE 69 >gi|264678937|ref|YP_003278844.1| GntR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262209450|gb|ACY33548.1| transcriptional regulator, GntR family [Comamonas testosteroni CNB-2] Length = 364 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +AE+ +S + + L G+V++ RG Sbjct: 61 SVRALAESAGVSRDTVVQAYDKLAAQGLVQSRRGSG 96 >gi|228964013|ref|ZP_04125143.1| hypothetical protein bthur0004_8730 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795665|gb|EEM43142.1| hypothetical protein bthur0004_8730 [Bacillus thuringiensis serovar sotto str. T04001] Length = 305 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ +H +IS++AE + E + + AGI +ET +GR GG L Sbjct: 1 MIEL-LHAREKMKISELAELLEVKERMVRIYRDDIEMAGIKIETTKGRDGGYSLS 54 >gi|255532109|ref|YP_003092481.1| regulatory protein GntR [Pedobacter heparinus DSM 2366] gi|255345093|gb|ACU04419.1| regulatory protein GntR HTH [Pedobacter heparinus DSM 2366] Length = 228 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++AEA +S L + L L G+VET + R G+ L RP Sbjct: 46 ELAEALDVSRNVLREALSRLRMLGMVETKKKR--GMILSRP 84 >gi|269127849|ref|YP_003301219.1| Helix-turn-helix type 11 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312807|gb|ACY99181.1| Helix-turn-helix type 11 domain protein [Thermomonospora curvata DSM 43183] Length = 320 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++A +SE +++ + L +AG+ V +GRRGG RL Sbjct: 14 QARGTMTARELARELEVSERTVYRDVLALSEAGVPVYAEQGRRGGYRL 61 >gi|269925417|ref|YP_003322040.1| protein of unknown function DUF43 [Thermobaculum terrenum ATCC BAA-798] gi|269789077|gb|ACZ41218.1| protein of unknown function DUF43 [Thermobaculum terrenum ATCC BAA-798] Length = 386 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 IR+L A P +++++ + L + + L GI+E R+GG+ L Sbjct: 27 IRLLQVVAARG--PISAKELSQSIGLPIPVLAAVRRELESRGILE----RKGGIVLT 77 >gi|217971454|ref|YP_002356205.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|217496589|gb|ACK44782.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] Length = 219 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y ++ S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|21225106|ref|NP_630885.1| transcription regulator ArsR [Streptomyces coelicolor A3(2)] gi|6855369|emb|CAB71260.1| putative ArsR-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 113 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +++LM A + + ++A+ +S + L+ L G++E+ R Sbjct: 38 LQLLMKLAERSGGEAAVHELAD-VGVSPATVSHHLKRLRCIGLIESRR 84 >gi|87309487|ref|ZP_01091622.1| putative transcriptional regulator [Blastopirellula marina DSM 3645] gi|87287795|gb|EAQ79694.1| putative transcriptional regulator [Blastopirellula marina DSM 3645] Length = 124 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 R ++ + P + + EA +S+ + K L L K G+V +VR ++G RL Sbjct: 20 RQIIDLLAQSTRPQAVGDLVEALQLSQPTVSKHLAVLRKVGVV-SVR-KQGQHRL 72 >gi|120555963|ref|YP_960314.1| putative ribonuclease BN [Marinobacter aquaeolei VT8] gi|120325812|gb|ABM20127.1| tRNA-processing RNAse BN [Marinobacter aquaeolei VT8] Length = 451 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 13 VLMYCAIHN---DYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-- 66 LM+ P + + + I KI L++AG++ + GR G +L Sbjct: 322 ALMWMVAKPFSRGEPAPQQESLEQQLRIPGEVTRKISDKLIRAGLLN-LAGRDGD-QLVP 379 Query: 67 CRPADQITILDVVKAT 82 R D IT+ V++A Sbjct: 380 GRTLDLITVGSVLRAV 395 >gi|328908190|gb|EGG27949.1| oxidoreductase, NAD-binding domain protein [Propionibacterium sp. P08] Length = 766 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--GGVRLCRPADQ 72 + + + + EA +S + IL L +G V +RG GG L RPA Sbjct: 14 VLLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWV--IRGASDPGG--LGRPATT 69 Query: 73 ITIL 76 ++ Sbjct: 70 WSLG 73 >gi|327536351|gb|AEA95185.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis OG1RF] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSEEGIQLALWPQTPPLTITVLE 87 >gi|320450228|ref|YP_004202324.1| IclR family transcriptional regulator [Thermus scotoductus SA-01] gi|320150397|gb|ADW21775.1| transcriptional regulator, IclR family [Thermus scotoductus SA-01] Length = 260 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +S++A+A I + +L L + G+++ RGR G RL Sbjct: 24 VSEVAKALGIPKSSAHALLATLAQIGLLK--RGREGRYRLG 62 >gi|315146434|gb|EFT90450.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX4244] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|307288308|ref|ZP_07568304.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0109] gi|306500746|gb|EFM70067.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0109] gi|315163564|gb|EFU07581.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX1302] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|300786558|ref|YP_003766849.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796072|gb|ADJ46447.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 106 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +R+L+ D P IAE ++ L + L+ L +AG+V R GR RL Sbjct: 20 LRLLL------DGPMPAGSIAERFEMARPSLSEHLRVLREAGLVTEQRQGRHRVYRLDAA 73 Query: 70 ADQ 72 + Sbjct: 74 PLE 76 >gi|288871334|ref|ZP_06410116.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium hathewayi DSM 13479] gi|288863858|gb|EFC96156.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium hathewayi DSM 13479] Length = 328 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATE 83 ++ + +S ++K + L + G +E VR + G RL D IT +++ E Sbjct: 19 VSGQELCDRFGVSRTAVWKAIGQLKEEGFQIEAVRNK--GYRLLSSDDVITEAELMSCME 76 Query: 84 ESF 86 Sbjct: 77 GGL 79 >gi|282162661|ref|YP_003358131.1| Kor [Streptomyces sp. Y27] gi|281494404|gb|ADA71991.1| Kor [Streptomyces sp. Y27] Length = 252 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 9/72 (12%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 DY + + ++AE S+ L +G+V RGR G Sbjct: 16 TAGDYA---------YGARMPSVRELAERYETSQQTAAAAYAALEGSGMVRVGRGREGTT 66 Query: 65 RLCRPADQITIL 76 P + Sbjct: 67 VTAGPPADAHLG 78 >gi|265764938|ref|ZP_06093213.1| GntR family regulatory protein [Bacteroides sp. 2_1_16] gi|263254322|gb|EEZ25756.1| GntR family regulatory protein [Bacteroides sp. 2_1_16] Length = 326 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I+Q+++A +S +FK L + GI+++ G+ Sbjct: 31 GDSLPSINQLSQAYEVSRDTVFKAFLDLKERGIIDSTPGKG 71 >gi|257417345|ref|ZP_05594339.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis AR01/DG] gi|257159173|gb|EEU89133.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis ARO1/DG] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|257088392|ref|ZP_05582753.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis D6] gi|256996422|gb|EEU83724.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis D6] gi|315026465|gb|EFT38397.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX2137] gi|315167102|gb|EFU11119.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX1341] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|256960566|ref|ZP_05564737.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis Merz96] gi|293385236|ref|ZP_06631052.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis R712] gi|293389753|ref|ZP_06634197.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis S613] gi|312906586|ref|ZP_07765586.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis DAPTO 512] gi|312910953|ref|ZP_07769788.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis DAPTO 516] gi|256951062|gb|EEU67694.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis Merz96] gi|291077436|gb|EFE14800.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis R712] gi|291081000|gb|EFE17963.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis S613] gi|310627234|gb|EFQ10517.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis DAPTO 512] gi|311288821|gb|EFQ67377.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis DAPTO 516] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWSQTPPLTITVLE 87 >gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 219 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 15/76 (19%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGI 53 LT + +Y + L + + + I E I E+++ + + L AG+ Sbjct: 150 LTAK-EYAV--LEHLVLRAGQVVSKADILEHVWDFAYSGDPNIVEVYVSTLRRKLG-AGL 205 Query: 54 VETVRGRRGGVRLCRP 69 + TVRG G L RP Sbjct: 206 IRTVRGA--GYLLERP 219 >gi|256618011|ref|ZP_05474857.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis ATCC 4200] gi|256597538|gb|EEU16714.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis ATCC 4200] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|255970579|ref|ZP_05421165.1| predicted protein [Enterococcus faecalis T1] gi|257420326|ref|ZP_05597316.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis X98] gi|307276534|ref|ZP_07557652.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX2134] gi|312953778|ref|ZP_07772607.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0102] gi|255961597|gb|EET94073.1| predicted protein [Enterococcus faecalis T1] gi|257162150|gb|EEU92110.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis X98] gi|306506644|gb|EFM75796.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX2134] gi|310628304|gb|EFQ11587.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0102] gi|315152713|gb|EFT96729.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0031] gi|315154662|gb|EFT98678.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0043] gi|315159659|gb|EFU03676.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0312] gi|323479157|gb|ADX78596.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis 62] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|300861651|ref|ZP_07107735.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TUSoD Ef11] gi|300849112|gb|EFK76865.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TUSoD Ef11] gi|315144218|gb|EFT88234.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX2141] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|299821658|ref|ZP_07053546.1| biotin--[acetyl-CoA-carboxylase] ligase [Listeria grayi DSM 20601] gi|299817323|gb|EFI84559.1| biotin--[acetyl-CoA-carboxylase] ligase [Listeria grayi DSM 20601] Length = 324 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPA 70 R+L H + +IA+ S ++K ++ L G ++E VR + G RL A Sbjct: 6 RLLALFQAHENDFLSGQKIADHLNCSRTAIWKQMEQLRTEGFLIEAVRNK--GYRLRASA 63 Query: 71 DQIT 74 +Q T Sbjct: 64 EQYT 67 >gi|227517168|ref|ZP_03947217.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0104] gi|227075391|gb|EEI13354.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0104] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|224825331|ref|ZP_03698436.1| GntR domain protein [Lutiella nitroferrum 2002] gi|224602252|gb|EEG08430.1| GntR domain protein [Lutiella nitroferrum 2002] Length = 250 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 13/117 (11%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLC 67 D + I +S + + + L AG+VET G G R+ Sbjct: 36 LLKPGDKLPTEAAIMRELDVSRTVVREAISRLQAAGLVETRHGIGTFVLEPSGEGAFRI- 94 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 PA TI DV+ E + A L +R+AL+AF L Q Sbjct: 95 DPATVTTIQDVLALLELRISLETEAAGLAAARRSDEQLQL---MRQALDAFLAALEQ 148 >gi|254472271|ref|ZP_05085671.1| nodulation protein nolr [Pseudovibrio sp. JE062] gi|211958554|gb|EEA93754.1| nodulation protein nolr [Pseudovibrio sp. JE062] Length = 105 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LM + ++AEA +S+ L + L + + +V T R + Sbjct: 29 LMVLCRLVQSECTVGELAEAVNLSQSALSQHLAKMRASNLVSTRRSAQ 76 >gi|209808784|ref|YP_002274355.1| Rep protein [Enterococcus faecium] gi|257892076|ref|ZP_05671729.1| replication protein [Enterococcus faecium 1,231,410] gi|257894955|ref|ZP_05674608.1| replication protein [Enterococcus faecium 1,231,408] gi|260562529|ref|ZP_05833037.1| rep protein [Enterococcus faecium C68] gi|209528621|dbj|BAG74922.1| Rep protein [Enterococcus faecium] gi|257828436|gb|EEV55062.1| replication protein [Enterococcus faecium 1,231,410] gi|257831334|gb|EEV57941.1| replication protein [Enterococcus faecium 1,231,408] gi|260073039|gb|EEW61386.1| rep protein [Enterococcus faecium C68] Length = 533 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRG 62 + I+E I L IL+ L A I+ T RGR G Sbjct: 418 VSMGTISEETQIPVSTLKVILKELRTANTVILRTSRGRYG 457 >gi|196248289|ref|ZP_03146990.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16] gi|196212014|gb|EDY06772.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16] Length = 135 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ +D + +A+ ++ + K + L + G + +V G+ G RP + Sbjct: 24 IVRELWQPHDQLPSVRAMAKQLMVNPNTIQKAYRELERDGWIYSVPGK-GSFVASRPKE 81 >gi|163855233|ref|YP_001629531.1| IclR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258961|emb|CAP41260.1| transcriptional regulator, IclR family [Bordetella petrii] Length = 283 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R+L A H D P + +++ + +IL LV VE R G +L Sbjct: 27 AMRLLDALAAHPD-PVTLKELSATTGLHASTAHRILNDLVVGRYVE--RVDNGLYQLGM 82 >gi|281357925|ref|ZP_06244410.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC BAA-548] gi|281315583|gb|EFA99611.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC BAA-548] Length = 261 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R + Y + + ++++A AC +S L + + Sbjct: 146 AARAMAYLEENYNRNISVAEVANACGVSPSHLHLLFRR 183 >gi|138895129|ref|YP_001125582.1| acetoin transport repressor [Geobacillus thermodenitrificans NG80-2] gi|134266642|gb|ABO66837.1| Acetoin transport repressor [Geobacillus thermodenitrificans NG80-2] Length = 141 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 ++ +D + +A+ ++ + K + L + G + +V G+ G RP + Sbjct: 30 IVRELWQPHDQLPSVRAMAKQLMVNPNTIQKAYRELERDGWIYSVPGK-GSFVASRPKE 87 >gi|134098630|ref|YP_001104291.1| GntR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003682|ref|ZP_06561655.1| GntR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911253|emb|CAM01366.1| transcriptional regulator, GntR family [Saccharopolyspora erythraea NRRL 2338] Length = 279 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 13 VLMYCA---IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +L A + P ++A +S L + + + LV G++ VRG+ Sbjct: 43 ILRELASGELLPGSPVPSERELATRYGVSRLTVREAVGQLVADGLLVRVRGKG 95 >gi|319424630|gb|ADV52704.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 219 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y ++ S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|78066907|ref|YP_369676.1| IclR family transcriptional regulator [Burkholderia sp. 383] gi|77967652|gb|ABB09032.1| transcriptional regulator, IclR family [Burkholderia sp. 383] Length = 269 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|29377684|ref|NP_816838.1| BirA bifunctional protein [Enterococcus faecalis V583] gi|227555181|ref|ZP_03985228.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis HH22] gi|229547919|ref|ZP_04436644.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis ATCC 29200] gi|255974163|ref|ZP_05424749.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T2] gi|257080344|ref|ZP_05574705.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis E1Sol] gi|257083102|ref|ZP_05577463.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis Fly1] gi|257091461|ref|ZP_05585822.1| predicted protein [Enterococcus faecalis CH188] gi|257418063|ref|ZP_05595057.1| predicted protein [Enterococcus faecalis T11] gi|307284745|ref|ZP_07564901.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0860] gi|312905541|ref|ZP_07764655.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0635] gi|29345152|gb|AAO82908.1| BirA bifunctional protein [Enterococcus faecalis V583] gi|227175699|gb|EEI56671.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis HH22] gi|229306940|gb|EEN72936.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis ATCC 29200] gi|255967035|gb|EET97657.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T2] gi|256988374|gb|EEU75676.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis E1Sol] gi|256991132|gb|EEU78434.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis Fly1] gi|257000273|gb|EEU86793.1| predicted protein [Enterococcus faecalis CH188] gi|257159891|gb|EEU89851.1| predicted protein [Enterococcus faecalis T11] gi|295114531|emb|CBL33168.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Enterococcus sp. 7L76] gi|306503004|gb|EFM72261.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0860] gi|310631270|gb|EFQ14553.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0635] gi|315150849|gb|EFT94865.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0012] gi|315161235|gb|EFU05252.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0645] gi|315171077|gb|EFU15094.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX1342] gi|315172938|gb|EFU16955.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX1346] gi|315574602|gb|EFU86793.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0309B] gi|315578498|gb|EFU90689.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0630] gi|315580830|gb|EFU93021.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0309A] Length = 330 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A+ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|53711543|ref|YP_097535.1| FucR [Bacteroides fragilis YCH46] gi|60679805|ref|YP_209949.1| GntR family regulatory protein [Bacteroides fragilis NCTC 9343] gi|253564396|ref|ZP_04841853.1| GntR family regulatory protein [Bacteroides sp. 3_2_5] gi|52214408|dbj|BAD47001.1| FucR [Bacteroides fragilis YCH46] gi|60491239|emb|CAH05987.1| putative GntR-family regulatory protein [Bacteroides fragilis NCTC 9343] gi|251948172|gb|EES88454.1| GntR family regulatory protein [Bacteroides sp. 3_2_5] Length = 326 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I+Q+++A +S +FK L + GI+++ G+ Sbjct: 31 GDSLPSINQLSQAYEVSRDTVFKAFLDLKERGIIDSTPGKG 71 >gi|84499373|ref|ZP_00997661.1| transcriptional regulator, GntR family protein [Oceanicola batsensis HTCC2597] gi|84392517|gb|EAQ04728.1| transcriptional regulator, GntR family protein [Oceanicola batsensis HTCC2597] Length = 250 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + D +Q++ ++ + + L+ L +V + RG GV + + I Sbjct: 26 MPGDRLPTEAQLSARFGVNRHTVRRALRDLSDRDLVLSRRGA--GVFVTQRPTDYPIGTR 83 Query: 79 VK 80 V+ Sbjct: 84 VR 85 >gi|146291464|ref|YP_001181888.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563154|gb|ABP74089.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 219 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y ++ S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|126172493|ref|YP_001048642.1| two component transcriptional regulator [Shewanella baltica OS155] gi|160873368|ref|YP_001552684.1| two component transcriptional regulator [Shewanella baltica OS195] gi|304411806|ref|ZP_07393418.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307306140|ref|ZP_07585885.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125995698|gb|ABN59773.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|160858890|gb|ABX47424.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|304349994|gb|EFM14400.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911013|gb|EFN41440.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315265596|gb|ADT92449.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 219 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y ++ S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|331695134|ref|YP_004331373.1| Crp/Fnr family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949823|gb|AEA23520.1| transcriptional regulator, Crp/Fnr family [Pseudonocardia dioxanivorans CB1190] Length = 245 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R+L+ A+ + P +A + L KIL+ +AG++E Sbjct: 183 RLLLDEAVDGEVPLPQRTLAAMLGVQRPSLNKILKEFERAGLIE 226 >gi|320661215|gb|EFX28646.1| putative transporter subunit: periplasmic-binding component of ABC superfamily protein [Escherichia coli O55:H7 str. USDA 5905] Length = 566 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + K Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|331651383|ref|ZP_08352408.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli M718] gi|331051124|gb|EGI23176.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli M718] Length = 566 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + K Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|302391274|ref|YP_003827094.1| sigma54 specific transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203351|gb|ADL12029.1| putative sigma54 specific transcriptional regulator [Acetohalobium arabaticum DSM 5501] Length = 728 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Query: 15 MYCAIHNDYPNRISQIAEACCI-----SELFLFKILQPLVKAGIVETVRGRRG 62 +Y A D +IA+ I S + L L + G+V+ +GR+G Sbjct: 660 LYLAKQLDENIGRREIAKNAEINNLYLSPQMVRSRLNKLEEHGLVDIGKGRQG 712 >gi|301022561|ref|ZP_07186433.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 69-1] gi|300397442|gb|EFJ80980.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 69-1] Length = 566 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + K Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|291281352|ref|YP_003498170.1| Bacterial extracellular solute-binding protein, family 5 [Escherichia coli O55:H7 str. CB9615] gi|290761225|gb|ADD55186.1| Bacterial extracellular solute-binding protein, family 5 [Escherichia coli O55:H7 str. CB9615] Length = 571 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + K Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 88 Query: 81 ATE 83 A E Sbjct: 89 ALE 91 >gi|239981016|ref|ZP_04703540.1| transcriptional regulator [Streptomyces albus J1074] gi|291452881|ref|ZP_06592271.1| transcriptional regulator [Streptomyces albus J1074] gi|291355830|gb|EFE82732.1| transcriptional regulator [Streptomyces albus J1074] Length = 230 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +H + +IAE +S + + L L G++++V+ R G R+ + ++ D Sbjct: 34 LHPGQEFTVKEIAEQYGVSATPVREALVDLSAQGLLDSVQHR--GFRV----HEFSVAD- 86 Query: 79 VKAT 82 +A Sbjct: 87 YRAM 90 >gi|226349541|ref|YP_002776655.1| putative ArsR family transcriptional regulator [Rhodococcus opacus B4] gi|226245456|dbj|BAH55803.1| putative ArsR family transcriptional regulator [Rhodococcus opacus B4] Length = 145 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 ++ IA + + L L A +V + R G R RL Sbjct: 46 GGERSVNDIAAIVGTPASTVSRHLAQLRAAHLVASRRIGTRRLYRL 91 >gi|222102666|ref|YP_002539705.1| transcriptional regulator ROK family [Agrobacterium vitis S4] gi|221739267|gb|ACM40000.1| transcriptional regulator ROK family [Agrobacterium vitis S4] Length = 412 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 28/51 (54%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++ AIH P ++IA+ +++ + +I+ L+ G+V R R+G Sbjct: 16 RAIILNAIHRGGPISRTEIAKLSRLTKQAVTRIVDKLLDEGLVMEARRRQG 66 >gi|196248736|ref|ZP_03147436.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16] gi|196211612|gb|EDY06371.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16] Length = 242 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++AE IS + + + + LV G + RG+ Sbjct: 28 QPGEMIASERELAEMYDISRMTVRQAVNNLVNDGYLVRRRGKG 70 >gi|53803853|ref|YP_114295.1| heat-inducible transcription repressor HrcA [Methylococcus capsulatus str. Bath] gi|61213337|sp|Q607A3|HRCA_METCA RecName: Full=Heat-inducible transcription repressor hrcA gi|53757614|gb|AAU91905.1| heat-inducible transcription repressor HrcA [Methylococcus capsulatus str. Bath] Length = 350 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L++R ++ L+ I P +A +S + ++ L + G++ + G Sbjct: 7 LSERAQQLLKALVERYIGEGQPVGSRVLARDAGLSPATIRNVMADLEELGLITSPHTSAG 66 Query: 63 ------GVRL 66 G RL Sbjct: 67 RLPTVSGYRL 76 >gi|15800175|ref|NP_286187.1| hypothetical protein Z0552 [Escherichia coli O157:H7 EDL933] gi|15829753|ref|NP_308526.1| hypothetical protein ECs0499 [Escherichia coli O157:H7 str. Sakai] gi|168747879|ref|ZP_02772901.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4113] gi|168754550|ref|ZP_02779557.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4401] gi|168760400|ref|ZP_02785407.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4501] gi|168768400|ref|ZP_02793407.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4486] gi|168777141|ref|ZP_02802148.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4196] gi|168778938|ref|ZP_02803945.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4076] gi|168786296|ref|ZP_02811303.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC869] gi|168798009|ref|ZP_02823016.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC508] gi|195936009|ref|ZP_03081391.1| hypothetical protein EscherichcoliO157_06016 [Escherichia coli O157:H7 str. EC4024] gi|208809498|ref|ZP_03251835.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4206] gi|208815594|ref|ZP_03256773.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4045] gi|208823207|ref|ZP_03263525.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4042] gi|209398118|ref|YP_002269092.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4115] gi|217325797|ref|ZP_03441881.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. TW14588] gi|254791629|ref|YP_003076466.1| putative ABC transporter periplasmic-binding protein [Escherichia coli O157:H7 str. TW14359] gi|261223928|ref|ZP_05938209.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256358|ref|ZP_05948891.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily protein [Escherichia coli O157:H7 str. FRIK966] gi|12513307|gb|AAG54795.1|AE005223_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13359956|dbj|BAB33922.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187767565|gb|EDU31409.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4196] gi|188017614|gb|EDU55736.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4113] gi|189002915|gb|EDU71901.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4076] gi|189358103|gb|EDU76522.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4401] gi|189362431|gb|EDU80850.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4486] gi|189369079|gb|EDU87495.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4501] gi|189373580|gb|EDU91996.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC869] gi|189379301|gb|EDU97717.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC508] gi|208729299|gb|EDZ78900.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4206] gi|208732242|gb|EDZ80930.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4045] gi|208737400|gb|EDZ85084.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4042] gi|209159518|gb|ACI36951.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. EC4115] gi|209778628|gb|ACI87626.1| hypothetical protein ECs0499 [Escherichia coli] gi|209778630|gb|ACI87627.1| hypothetical protein ECs0499 [Escherichia coli] gi|209778632|gb|ACI87628.1| hypothetical protein ECs0499 [Escherichia coli] gi|209778634|gb|ACI87629.1| hypothetical protein ECs0499 [Escherichia coli] gi|209778636|gb|ACI87630.1| hypothetical protein ECs0499 [Escherichia coli] gi|217322018|gb|EEC30442.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. TW14588] gi|254591029|gb|ACT70390.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli O157:H7 str. TW14359] gi|320192861|gb|EFW67501.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Escherichia coli O157:H7 str. EC1212] gi|320638440|gb|EFX08154.1| Bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. G5101] gi|320643821|gb|EFX12944.1| Bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H- str. 493-89] gi|320649172|gb|EFX17750.1| Bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H- str. H 2687] gi|320656065|gb|EFX23981.1| Bacterial extracellular solute-binding protein, family 5 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665191|gb|EFX32284.1| Bacterial extracellular solute-binding protein, family 5 [Escherichia coli O157:H7 str. LSU-61] gi|326341209|gb|EGD65001.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Escherichia coli O157:H7 str. 1044] gi|326346016|gb|EGD69755.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Escherichia coli O157:H7 str. 1125] Length = 566 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + K Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|107028688|ref|YP_625783.1| IclR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690153|ref|YP_835776.1| IclR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733485|ref|YP_001765432.1| IclR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206560566|ref|YP_002231331.1| IclR family regulatory protein [Burkholderia cenocepacia J2315] gi|254247778|ref|ZP_04941099.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184] gi|105897852|gb|ABF80810.1| transcriptional regulator, IclR family [Burkholderia cenocepacia AU 1054] gi|116648242|gb|ABK08883.1| transcriptional regulator, IclR family [Burkholderia cenocepacia HI2424] gi|124872554|gb|EAY64270.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184] gi|169816727|gb|ACA91310.1| transcriptional regulator, IclR family [Burkholderia cenocepacia MC0-3] gi|198036608|emb|CAR52505.1| IclR family regulatory protein [Burkholderia cenocepacia J2315] Length = 269 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|317404976|gb|EFV85338.1| GntR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 267 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 12/65 (18%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR----------GGVRLCRPADQITILDV 78 ++A +S + + L L + +VE++RG GG+ PA + + Sbjct: 69 ELAALFEVSRPVVRQALDRLREDQLVESMRGSGSYVRAKPDLMGGMSAVDPAR--RVGHI 126 Query: 79 VKATE 83 ++ E Sbjct: 127 LEGLE 131 >gi|314953413|ref|ZP_07856333.1| hypothetical protein HMPREF9523_02707 [Enterococcus faecium TX0133A] gi|313594554|gb|EFR73399.1| hypothetical protein HMPREF9523_02707 [Enterococcus faecium TX0133A] Length = 410 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51 M LT R +Y LM + + E IS +L K+ + L + Sbjct: 6 MDLTNRFNY----LMLLINYPQTAVPKKYLLEQLYISPSYLEKLTKQLNHS 52 >gi|314939910|ref|ZP_07847114.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133a04] gi|314944131|ref|ZP_07850785.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133C] gi|314994119|ref|ZP_07859432.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133B] gi|314996100|ref|ZP_07861174.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133a01] gi|313589713|gb|EFR68558.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133a01] gi|313591455|gb|EFR70300.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133B] gi|313597289|gb|EFR76134.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133C] gi|313640838|gb|EFS05418.1| M protein trans-acting positive regulator [Enterococcus faecium TX0133a04] Length = 411 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51 M LT R +Y LM + + E IS +L K+ + L + Sbjct: 7 MDLTNRFNY----LMLLINYPQTAVPKKYLLEQLYISPSYLEKLTKQLNHS 53 >gi|307324396|ref|ZP_07603604.1| transcriptional regulator, GntR family [Streptomyces violaceusniger Tu 4113] gi|306890127|gb|EFN21105.1| transcriptional regulator, GntR family [Streptomyces violaceusniger Tu 4113] Length = 258 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 P SQ+ E +S + K + L G++E + G+ G PA +TI Sbjct: 28 KPGSPLPSESQLIERYKVSRPTVRKAIAALRAEGLIEVIHGK-GSYVRALPAPAVTI 83 >gi|299537256|ref|ZP_07050559.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298727497|gb|EFI68069.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 132 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R+L + + IA IS + ++ L + G V Sbjct: 28 SVRILQMI--QKEAEVTVRDIAGLLNISPNTASEHVKKLERHGWV 70 >gi|296268336|ref|YP_003650968.1| ArsR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091123|gb|ADG87075.1| transcriptional regulator, ArsR family [Thermobispora bispora DSM 43833] Length = 127 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + A ++ + L+ L +AG++++ R Sbjct: 50 LRLLSLIACHEAGETCVCDLTAAFDLTPPTISHHLRVLKQAGLIDSER 97 >gi|295112566|emb|CBL31203.1| Primase C terminal 1 (PriCT-1). [Enterococcus sp. 7L76] Length = 496 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66 + Y + +D ++ E I E L K+L+ L + GR GG++L Sbjct: 376 MAYISEKSDVYKPYLVTTKKELREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435 Query: 67 C 67 Sbjct: 436 A 436 >gi|218290162|ref|ZP_03494321.1| transcriptional regulator, DeoR family [Alicyclobacillus acidocaldarius LAA1] gi|218239757|gb|EED06947.1| transcriptional regulator, DeoR family [Alicyclobacillus acidocaldarius LAA1] Length = 266 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 RVL+ A H Q+AE +SE+ + + ++ L G+VET GG ++ R + Sbjct: 8 RVLLELLAQHG--FASYRQLAERLGVSEITVRRDMKALEAQGLVET---AFGGGQVARAS 62 Query: 71 DQ 72 + Sbjct: 63 RE 64 >gi|170701993|ref|ZP_02892913.1| transcriptional regulator, IclR family [Burkholderia ambifaria IOP40-10] gi|171320026|ref|ZP_02909097.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] gi|170133083|gb|EDT01491.1| transcriptional regulator, IclR family [Burkholderia ambifaria IOP40-10] gi|171094719|gb|EDT39762.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] Length = 269 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|94971572|ref|YP_593620.1| DeoR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553622|gb|ABF43546.1| transcriptional regulator, DeoR family [Candidatus Koribacter versatilis Ellin345] Length = 314 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +AE +SE + + ++ L +G+ V VRG +GG +L Sbjct: 17 GRMTGRDLAERLEVSERTVHRDMESLSASGVPVYAVRGAQGGWQL 61 >gi|83717843|ref|YP_439282.1| ArsR family transcriptional regulator [Burkholderia thailandensis E264] gi|167577681|ref|ZP_02370555.1| transcriptional regulator, ArsR family protein [Burkholderia thailandensis TXDOH] gi|167615806|ref|ZP_02384441.1| transcriptional regulator, ArsR family protein [Burkholderia thailandensis Bt4] gi|257142401|ref|ZP_05590663.1| ArsR family transcriptional regulator [Burkholderia thailandensis E264] gi|83651668|gb|ABC35732.1| transcriptional regulator, ArsR family [Burkholderia thailandensis E264] Length = 115 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+LM C + +S I I + L + L L + +VET R G+ L Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLGVLREHALVETRRDGKNIYYALASEP 91 Query: 71 D 71 Sbjct: 92 A 92 >gi|115352220|ref|YP_774059.1| IclR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172061087|ref|YP_001808739.1| IclR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115282208|gb|ABI87725.1| transcriptional regulator, IclR family [Burkholderia ambifaria AMMD] gi|171993604|gb|ACB64523.1| transcriptional regulator, IclR family [Burkholderia ambifaria MC40-6] Length = 269 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|329936033|ref|ZP_08285833.1| Transcriptional regulator, ArsR family [Streptomyces griseoaurantiacus M045] gi|329304511|gb|EGG48389.1| Transcriptional regulator, ArsR family [Streptomyces griseoaurantiacus M045] Length = 117 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 41 LRLFSSVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 87 >gi|325964462|ref|YP_004242368.1| ArsR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470549|gb|ADX74234.1| transcriptional regulator, ArsR family [Arthrobacter phenanthrenivorans Sphe3] Length = 125 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 11 IRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 +R+L ++ P ++++ A + + + L L +G+V+T + GR Sbjct: 36 LRMLAEPTRLHLLWQLSEGPKTVTELTAAASVPRTVVSQHLAKLRLSGLVDTRKDGRH 93 >gi|318057810|ref|ZP_07976533.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actG] Length = 287 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67 +R + + + E +S + + +Q L G VETV G R L Sbjct: 100 ALRTALDSGELEPGRVYSAPALGERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 157 Query: 68 RPADQ-ITILDVVKATE 83 R AD + +V+ E Sbjct: 158 RTADDAAALAEVLFLIE 174 >gi|315185461|gb|EFU19232.1| iron (metal) dependent repressor, DtxR family [Spirochaeta thermophila DSM 6578] Length = 156 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 1 MH---LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT R DY + + A R+ IAEA +S + L L G +E Sbjct: 1 MRQEDLTSRMEDY-LEAIYVLA-KTKRVARVRDIAEALGVSRSTVSNTLHTLSDKGFIE 57 >gi|311105792|ref|YP_003978645.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760481|gb|ADP15930.1| bacterial regulatory protein, GntR family protein 27 [Achromobacter xylosoxidans A8] Length = 267 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 11/95 (11%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK---ATEES 85 ++A +S + + L L + +V+++RG G +P D++ A + + Sbjct: 69 ELAALFEVSRPVVRQALDRLREDQLVDSIRG-SGSYVRAKP-------DLMGGMPAVDPA 120 Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 V ++ + C + LR+ D Sbjct: 121 RRVGHILEGLELRMVIEPECAYLAALRRTDEDLRD 155 >gi|302522661|ref|ZP_07275003.1| GntR-family transcriptional regulator [Streptomyces sp. SPB78] gi|302431556|gb|EFL03372.1| GntR-family transcriptional regulator [Streptomyces sp. SPB78] Length = 281 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67 +R + + + E +S + + +Q L G VETV G R L Sbjct: 94 ALRTALDSGELEPGRVYSAPALGERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 151 Query: 68 RPADQ-ITILDVVKATE 83 R AD + +V+ E Sbjct: 152 RTADDAAALAEVLFLIE 168 >gi|239977987|ref|ZP_04700511.1| MarR family transcriptional regulator [Streptomyces albus J1074] gi|291449894|ref|ZP_06589284.1| MarR-family transcriptional regulator [Streptomyces albus J1074] gi|291352843|gb|EFE79745.1| MarR-family transcriptional regulator [Streptomyces albus J1074] Length = 146 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV------RL 66 VL + ++ ++++A ++ + + + LV G++ + G G RL Sbjct: 47 VLAHL--RHESALSVAELARRAGVTRQTMHRAVTQLVGEGLLTSEPGP--GFPRSTLIRL 102 Query: 67 CRPA---DQITILDVVKATEESF 86 I + +++ EE Sbjct: 103 TEAGCRRRDIALG-ILRDLEEEL 124 >gi|256390536|ref|YP_003112100.1| hypothetical protein Caci_1336 [Catenulispora acidiphila DSM 44928] gi|256356762|gb|ACU70259.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila DSM 44928] Length = 314 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + + + +A +S + + LQ L +AG + RGR GGV L Sbjct: 9 LLLTLQSRESTTTADLAAHVGVSVRTVIRDLQWLQEAGFPLLIRRGRWGGVSL 61 >gi|261364415|ref|ZP_05977298.1| transcriptional regulator, ArsR family [Neisseria mucosa ATCC 25996] gi|288567318|gb|EFC88878.1| transcriptional regulator, ArsR family [Neisseria mucosa ATCC 25996] Length = 100 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 23/43 (53%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L+ ++ P+ ++++AE+ + + + L L +AG+V Sbjct: 24 HRLVVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66 >gi|158334467|ref|YP_001515639.1| hypothetical protein AM1_1289 [Acaryochloris marina MBIC11017] gi|158304708|gb|ABW26325.1| hypothetical protein AM1_1289 [Acaryochloris marina MBIC11017] Length = 756 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-------VETVRGRRG 62 R+L Y P ++++A C S+ + ++++ L + G VE GR G Sbjct: 601 RLLEYFQQSPGVPFEVAELATHFCSSQSHMRRLVKRLWRQGHITEEVREVEANNGRGG 658 >gi|134102558|ref|YP_001108219.1| GntR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007071|ref|ZP_06565044.1| GntR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915181|emb|CAM05294.1| GntR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 111 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +A A I+ + + L+ L G++E RGR Sbjct: 27 APGDRLPPARDLAAALQINANTVLRALRQLRDEGLLEFRRGRG 69 >gi|119720455|ref|YP_920950.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5] gi|119525575|gb|ABL78947.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5] Length = 342 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 26/46 (56%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +Y A+ P+ + ++++ + L + L+ LV+ G+VE RG+ Sbjct: 22 IYQALLKYGPSTLRELSDKVDMVGSQLHQYLKRLVRLGLVEVSRGK 67 >gi|30387203|ref|NP_848180.1| putative transcriptional regulator [Corynebacterium jeikeium] gi|30349357|gb|AAP22078.1| putative transcriptional regulator [Corynebacterium jeikeium] Length = 321 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++AE +S + + ++ L AG+ V RGR GG+ L Sbjct: 17 QRITTTELAERLEVSRRTVLRDVEALSTAGVPVYAERGRNGGIVL 61 >gi|120597039|ref|YP_961613.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|120557132|gb|ABM23059.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] Length = 219 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y ++ S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|158316161|ref|YP_001508669.1| ArsR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111566|gb|ABW13763.1| transcriptional regulator, ArsR family [Frankia sp. EAN1pec] Length = 113 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IRVL A D P + ++ A + L + L L ++GIV R Sbjct: 22 IRVLELLA---DGPMPVRELLAAIEVEPSNLSQQLAVLRRSGIVTATR 66 >gi|330466340|ref|YP_004404083.1| putative transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809311|gb|AEB43483.1| putative transcriptional regulator [Verrucosispora maris AB-18-032] Length = 159 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 RTD +R L + ND P ++ A IS ++ L +AG+V R Sbjct: 36 RTD--LRAL-DLVLANDGPFSAGELTRALKISPAATTTVIDRLERAGLVARTR 85 >gi|325289926|ref|YP_004266107.1| transcriptional regulator, GntR family [Syntrophobotulus glycolicus DSM 8271] gi|324965327|gb|ADY56106.1| transcriptional regulator, GntR family [Syntrophobotulus glycolicus DSM 8271] Length = 119 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + + +E+ ++ + ++ L + GI + RG Sbjct: 30 GDKMMSVREYSESLKVNPNTIQRVFLELEREGITYSQRGVG 70 >gi|301161325|emb|CBW20865.1| putative GntR-family regulatory protein [Bacteroides fragilis 638R] Length = 329 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D I+Q+++A +S +FK L + GI+++ G+ Sbjct: 34 GDSLPSINQLSQAYEVSRDTVFKAFLDLKERGIIDSTPGKG 74 >gi|297194784|ref|ZP_06912182.1| DeoR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152462|gb|EDY67323.2| DeoR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 321 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 M + + +++A +SE + + L +AG+ V RGR GG RL Sbjct: 9 MVLLLQSRPSMTGAELARELEVSERTVTRDALALSEAGVPVYADRGRAGGYRL 61 >gi|256851060|ref|ZP_05556449.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260661272|ref|ZP_05862186.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|256616122|gb|EEU21310.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260548209|gb|EEX24185.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] Length = 259 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 4 TKRTDYGIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +K+ Y + ++ Y A H+ +S++A + +L ++ Q L K + Sbjct: 145 SKKVKYASKDTQAGALMSYIASHHGQ-VTLSEMANEFGYQKNYLSRLCQKLFKQDFIH 201 >gi|221196879|ref|ZP_03569926.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] gi|221203549|ref|ZP_03576568.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221212538|ref|ZP_03585515.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] gi|221167637|gb|EEE00107.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] gi|221177483|gb|EEE09911.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221183433|gb|EEE15833.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] Length = 289 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + VL A + ++ IA+ I ++L L+ G V R G L Sbjct: 8 ALAVLELLAKNGGR-MSLATIADTLNIPRSGTHRLLSMLIDEGFVRQDR-EHGEYMLA 63 >gi|254389785|ref|ZP_05005009.1| differentiation regulon [Streptomyces clavuligerus ATCC 27064] gi|197703496|gb|EDY49308.1| differentiation regulon [Streptomyces clavuligerus ATCC 27064] Length = 218 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++ D G+RVL A D+ ++++++ ++ ++++L L + +V Sbjct: 19 SQTLDRGLRVLKLLA-DTDHGLTVTELSQRLGVNRTVVYRLLATLEQHALVR 69 >gi|167839980|ref|ZP_02466664.1| transcriptional regulator, ArsR family protein [Burkholderia thailandensis MSMB43] Length = 115 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+LM C + +S I I + L + L L + +VET R G+ L Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLGVLREHALVETRRDGKNIYYSLASEP 91 Query: 71 D 71 Sbjct: 92 A 92 >gi|161524313|ref|YP_001579325.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350931|ref|YP_001946559.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221214783|ref|ZP_03587752.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] gi|160341742|gb|ABX14828.1| transcriptional regulator, IclR family [Burkholderia multivorans ATCC 17616] gi|189334953|dbj|BAG44023.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221165322|gb|EED97799.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] Length = 269 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|148555159|ref|YP_001262741.1| ArsR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148500349|gb|ABQ68603.1| transcriptional regulator, ArsR family [Sphingomonas wittichii RW1] Length = 110 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 16/42 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H +IA + + + L L +AG+V + R Sbjct: 25 LVKHEPVGMAAGEIARRLDVPQNTMSAHLGILARAGLVRSER 66 >gi|117927782|ref|YP_872333.1| GntR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648245|gb|ABK52347.1| transcriptional regulator, GntR family [Acidothermus cellulolyticus 11B] Length = 253 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Y +R L+ A D +Q+ +S + + + L L + G +E +GR Sbjct: 31 RY-LRELIASAKPGDRLPSEAQLCARFGVSRMTVRQALGELERDGSIERSQGRG 83 >gi|114045690|ref|YP_736240.1| biotin--protein ligase [Shewanella sp. MR-7] gi|113887132|gb|ABI41183.1| biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. MR-7] Length = 319 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 + ++Y ++A IS + K + L G+ + +V+GR G +L P I Sbjct: 15 LSSEYFVSGEELATQLGISRAAVSKHVDALEDYGVAIYSVKGR--GYKLANPISLIDSAR 72 Query: 78 VVKATEESFFVAECFASHKID 98 ++++ + CF +I Sbjct: 73 LIQSID-----NRCFYFDEIP 88 >gi|326386102|ref|ZP_08207726.1| transcriptional regulator, GntR family [Novosphingobium nitrogenifigens DSM 19370] gi|326209327|gb|EGD60120.1| transcriptional regulator, GntR family [Novosphingobium nitrogenifigens DSM 19370] Length = 218 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ + I IA+ S + + L L G+VE VR R G R+ +I+ D Sbjct: 22 ALRSGSLYSIGDIAQQLGTSPTPIREALLELENDGLVELVRNR--GFRI----REISRAD 75 Query: 78 V 78 + Sbjct: 76 I 76 >gi|311896260|dbj|BAJ28668.1| putative IclR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 216 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++ D G+RVL A ++ ++++A ++ ++++L L + G+V Sbjct: 6 SQTLDRGVRVLKLLA-DSERGLTVTELAARLAVNRTVVYRLLATLEQHGLVR 56 >gi|300724533|ref|YP_003713858.1| transcriptional regulator [Xenorhabdus nematophila ATCC 19061] gi|297631075|emb|CBJ91761.1| TRANSCRIPTION REGULATOR PROTEIN [Xenorhabdus nematophila ATCC 19061] Length = 156 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 20/132 (15%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 RVL A P IS +A+ + + ++LQ L G V G R Sbjct: 42 RVLSTLA--GSGPIGISLLAQRTVSKQPTITRVLQRLESQGHVARFSNGGGDRR------ 93 Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131 IT+ V+ TE V E + SVL N +L + ++ L+ Sbjct: 94 -ITL---VRLTETGLEVVEELLAEAKSHE-------QSVLEPLGNGKSQLLKEV-LQELI 141 Query: 132 RNRSSIKKIFNA 143 + + I+K+ Sbjct: 142 KQHTPIRKVLGE 153 >gi|293376298|ref|ZP_06622538.1| transcriptional regulator, AraC family [Turicibacter sanguinis PC909] gi|325843206|ref|ZP_08167892.1| transcriptional regulator, AraC family [Turicibacter sp. HGF1] gi|292645076|gb|EFF63146.1| transcriptional regulator, AraC family [Turicibacter sanguinis PC909] gi|325489450|gb|EGC91820.1| transcriptional regulator, AraC family [Turicibacter sp. HGF1] Length = 276 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 3 LTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 ++K++DY IR + + + + +I+ I+ +L K+ L Sbjct: 166 MSKQSDY-IRQAIEFIETNYARHITVEEISNYVGINRKYLTKLFNEL 211 >gi|289644341|ref|ZP_06476425.1| transcriptional regulator, GntR family [Frankia symbiont of Datisca glomerata] gi|289505866|gb|EFD26881.1| transcriptional regulator, GntR family [Frankia symbiont of Datisca glomerata] Length = 263 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 20/34 (58%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++A+ +S + + + +Q L G+V +RGR Sbjct: 36 AELADKMGVSRVTINRAVQILRAEGLVRVLRGRG 69 >gi|262274231|ref|ZP_06052043.1| transcriptional regulator IclR family [Grimontia hollisae CIP 101886] gi|262222041|gb|EEY73354.1| transcriptional regulator IclR family [Grimontia hollisae CIP 101886] Length = 255 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 RVL + ++ P ++++ I + + ++LQ L + G V+T RGG+ Sbjct: 14 RVLEIIEAVSRSERPPSPAELSIMLDIPKPSIHRLLQQLEREGFVQTNM--RGGLIPANR 71 Query: 70 ADQITIL 76 I + Sbjct: 72 MHDIALG 78 >gi|259046503|ref|ZP_05736904.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259036668|gb|EEW37923.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 297 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y + + SQ+A+ +S +++ + L AGI + +G+ GG+ + R Sbjct: 7 FRLLYY--VLSKRKVTASQLADHFEVSIRTIYRDIDNLSSAGIPIYATQGKGGGIEISRD 64 >gi|256379974|ref|YP_003103634.1| MarR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924277|gb|ACU39788.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM 43827] Length = 164 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 T+Y + L+ A + R+S++A A +S + +++ +V+ G++E Sbjct: 45 TEYAV--LLMLAEAPERRLRMSELASAVALSGSRVTRVVDAMVRLGLLE 91 >gi|312110477|ref|YP_003988793.1| bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase [Geobacillus sp. Y4.1MC1] gi|311215578|gb|ADP74182.1| bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase [Geobacillus sp. Y4.1MC1] Length = 329 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R L+ + N +I+E S ++K ++ L K G +E VR G R+ + Sbjct: 11 RKLLELFSEANGEFISGQKISEMLGCSRTAVWKHIEELRKEGFELEAVRRL--GYRIVKA 68 Query: 70 ADQITILDV 78 D++T ++ Sbjct: 69 PDKVTANEI 77 >gi|221090739|ref|XP_002170430.1| PREDICTED: similar to transposase-like [Hydra magnipapillata] Length = 303 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +L+ A + IA+ +S+ L K L + + G + RGR G Sbjct: 15 ILI-LAQQKN---STRDIAKIVNVSQSCLSKTLSRIRQCG-TFSSRGRSG 59 >gi|219557642|ref|ZP_03536718.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|260200781|ref|ZP_05768272.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289443178|ref|ZP_06432922.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289569770|ref|ZP_06449997.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289416097|gb|EFD13337.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289543524|gb|EFD47172.1| transcriptional regulator [Mycobacterium tuberculosis T17] Length = 259 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +L H ++ ++I E ++ + +IL L G+V + R RG RL Sbjct: 19 AAELLRVLQAHPGGLSQ-AEIGERVGMARSTVSRILNALEDEGLVASRR-ARGPYRLGP- 75 Query: 70 ADQIT 74 +IT Sbjct: 76 --EIT 78 >gi|148271560|ref|YP_001221121.1| GntR family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829490|emb|CAN00403.1| putative transcriptional regulator, GntR family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + S++AE + + + + L G+V + RG Sbjct: 33 GAKLSSESELAERFQVHRHTVRQAVAALATDGLVVSRRGSG 73 >gi|152998792|ref|YP_001364473.1| two component transcriptional regulator [Shewanella baltica OS185] gi|151363410|gb|ABS06410.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] Length = 219 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y ++ S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|138895844|ref|YP_001126297.1| GntR family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|134267357|gb|ABO67552.1| Transcriptional regulator GntR family [Geobacillus thermodenitrificans NG80-2] Length = 242 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE IS + + + + LV G + RG+ Sbjct: 28 QPGEMIPSERELAETYDISRMTVRQAVNNLVNDGYLVRRRGKG 70 >gi|92112430|ref|YP_572358.1| IclR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795520|gb|ABE57659.1| transcriptional regulator, IclR family [Chromohalobacter salexigens DSM 3043] Length = 260 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +RVL + D + ++AE I + +I L + G V R G RL Sbjct: 10 LRVLETLSSEPDG-IPLQRLAERLEIPKSAAHRICNELGRQGYVR-QETRTGHYRLS 64 >gi|10803659|ref|NP_046057.1| hypothetical protein VNG7112 [Halobacterium sp. NRC-1] gi|169237301|ref|YP_001690507.1| hypothetical protein OE7209F [Halobacterium salinarum R1] gi|169237344|ref|YP_001690549.1| hypothetical protein OE8041F [Halobacterium salinarum R1] gi|2822390|gb|AAC82896.1| unknown [Halobacterium sp. NRC-1] gi|167728367|emb|CAP15171.1| hypothetical protein OE7209F [Halobacterium salinarum R1] gi|167728860|emb|CAP15752.1| hypothetical protein OE8041F [Halobacterium salinarum R1] Length = 130 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L + H++Y +IA+ I+E + K ++ L + +VE Sbjct: 25 ALDFLVRHHEYGFSPREIADRTDINESSVAKTMRRLEENDVVE 67 >gi|45357615|ref|NP_987172.1| putative CBS domain-containing signal transduction protein [Methanococcus maripaludis S2] gi|45047175|emb|CAF29608.1| Conserved Hypothetical protein with 2 CBS domains [Methanococcus maripaludis S2] Length = 303 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 L+ + + ++IA + + +Q L +V+ V G +GG Sbjct: 14 LISIYREKNKAVKGTEIAVKLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64 >gi|317405373|gb|EFV85691.1| ArsR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 228 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPAD 71 L+ + + + + Q+A +S + LQ L +AG +++ R G+ R Sbjct: 35 ALLQAVLQRE--STVEQLALGVGLSITNASQHLQQLKRAGFIQSRRDGKHVLYRGGAGP- 91 Query: 72 QITILDVVKATEE 84 + +V+ A ++ Sbjct: 92 ---VSEVLSALQD 101 >gi|281358007|ref|ZP_06244491.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC BAA-548] gi|281315380|gb|EFA99409.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC BAA-548] Length = 200 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 P S ++EA I+ K+L+ LV G E +RGG L A Sbjct: 19 GAPATPSSLSEAVGINPSTARKLLEDLVLTGFAE-QSSKRGGYTLGPSA 66 >gi|269959234|ref|ZP_06173618.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835936|gb|EEZ90011.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 316 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + Y I + +IAE +S + + + L G+VE +G Sbjct: 75 KGAYAI---------GERLPTEREIAEQYDVSRTVIREAIIMLELEGLVEVRKGSG 121 >gi|291295011|ref|YP_003506409.1| ABC-3 protein [Meiothermus ruber DSM 1279] gi|290469970|gb|ADD27389.1| ABC-3 protein [Meiothermus ruber DSM 1279] Length = 364 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 10 GIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ + A H+D P ++ E + FL ++ + +AG +E VR Sbjct: 295 AARLLVAHLA-HHDQPVPEGEVLEEFGWNPRFLKQVREKARQAGWLEVVR 343 >gi|254453203|ref|ZP_05066640.1| regulatory protein GntR, HTH [Octadecabacter antarcticus 238] gi|198267609|gb|EDY91879.1| regulatory protein GntR, HTH [Octadecabacter antarcticus 238] Length = 242 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74 ++ ++++E +S + + L+ L ++ T RG GG + R QIT Sbjct: 27 DERLPSEAELSEQFAVSRSTVREALKRLAAQSLIRTQRGAMGGAFVNRLTFEQAYGQQIT 86 Query: 75 ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118 ++ + + F C FA + PL L Sbjct: 87 TSALLLSMNDVNFDTACEARFALERACAPLSAQRRTADHLATMRAEI 133 >gi|167842127|ref|ZP_02468811.1| transcriptional regulator [Burkholderia thailandensis MSMB43] Length = 513 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 10 GIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 +R L+Y H P + Q+A+ +S L + + Sbjct: 410 ALRKALLYLGEHYANPISMEQLAQHAHVSPSHLSYLFR 447 >gi|157370119|ref|YP_001478108.1| ArsR family transcriptional regulator [Serratia proteamaculans 568] gi|157321883|gb|ABV40980.1| transcriptional regulator, ArsR family [Serratia proteamaculans 568] Length = 103 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + + ++A+A I + L + L L + G+V T R Sbjct: 26 LLLLCQLSQGEMSVGELAQALEIRQPTLSQQLGVLRQEGLVSTRR 70 >gi|83952675|ref|ZP_00961405.1| transcriptional regulator, DeoR family protein [Roseovarius nubinhibens ISM] gi|83835810|gb|EAP75109.1| transcriptional regulator, DeoR family protein [Roseovarius nubinhibens ISM] Length = 265 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 R + +AEA +SE + + ++ L K GIV V GGV L Sbjct: 24 GGSARTAALAEALSVSEETVRRTVKALAKTGIVHRV---HGGVYLA 66 >gi|325110667|ref|YP_004271735.1| regulatory protein ArsR [Planctomyces brasiliensis DSM 5305] gi|324970935|gb|ADY61713.1| regulatory protein ArsR [Planctomyces brasiliensis DSM 5305] Length = 107 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC------RPADQIT 74 D P +++I + + L L+ L +AG+V R GR L R I Sbjct: 39 DGPRTVAEINASLDVEPTLLSHHLRALREAGLVTRERQGRHASYALASALVERRKGRAID 98 Query: 75 IL 76 + Sbjct: 99 LG 100 >gi|319762845|ref|YP_004126782.1| cyclic nucleotide-binding protein [Alicycliphilus denitrificans BC] gi|330824924|ref|YP_004388227.1| Crp/Fnr family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117406|gb|ADU99894.1| cyclic nucleotide-binding protein [Alicycliphilus denitrificans BC] gi|329310296|gb|AEB84711.1| transcriptional regulator, Crp/Fnr family [Alicycliphilus denitrificans K601] Length = 239 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 A++ P + IA I+ + ++L L +AG++ Sbjct: 182 ALNVSLPVSKATIASRLSITPEYFSRVLHELEEAGLIR 219 >gi|296117378|ref|ZP_06835968.1| manganese transport regulator MntR [Gluconacetobacter hansenii ATCC 23769] gi|295976144|gb|EFG82932.1| manganese transport regulator MntR [Gluconacetobacter hansenii ATCC 23769] Length = 152 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 4 TKRT----DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +++T DY + ++ +H+ R IA+ +S+ + K+L L G+V R Sbjct: 17 SRKTALVEDY-VELIADL-LHDGQEARQVDIAQRLGVSQPTVAKMLCRLEADGLVT--RR 72 Query: 60 RRGGVRLCRPADQ 72 G+ L ++ Sbjct: 73 PYRGIFLTEAGEK 85 >gi|320008873|gb|ADW03723.1| helix-turn-helix, type 11 domain-containing protein [Streptomyces flavogriseus ATCC 33331] Length = 238 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 L+ P +++A+ +S + + + L AG+ + G GG + R Sbjct: 9 ALVDLLRGARRPRPAARLADEFGVSTRTIERDIAALQLAGVPIYAEHGATGGYAILRE 66 >gi|302523099|ref|ZP_07275441.1| DeoR family transcriptional regulator [Streptomyces sp. SPB78] gi|302431994|gb|EFL03810.1| DeoR family transcriptional regulator [Streptomyces sp. SPB78] Length = 410 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A+ ++ + + + L + G + TV+G GG RL Sbjct: 26 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 63 >gi|302525428|ref|ZP_07277770.1| DeoR family transcriptional regulator [Streptomyces sp. AA4] gi|302434323|gb|EFL06139.1| DeoR family transcriptional regulator [Streptomyces sp. AA4] Length = 308 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++AE IS + L+ L AGI V GR GG L Sbjct: 11 LLLQARGRVTAAELAEDLEISVATARRDLEALSAAGIPVYPQPGRGGGWSL 61 >gi|229161590|ref|ZP_04289570.1| Transcriptional regulator, DeoR [Bacillus cereus R309803] gi|228621835|gb|EEK78681.1| Transcriptional regulator, DeoR [Bacillus cereus R309803] Length = 320 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + QI+E I+ +++ + L +G+ + + G GG L Sbjct: 14 LRSGEKITAKQISEKLEINIRTVYRYIDTLSTSGVPIISEPGHNGGYTL 62 >gi|168187242|ref|ZP_02621877.1| transcriptional regulator, GntR family [Clostridium botulinum C str. Eklund] gi|169294879|gb|EDS77012.1| transcriptional regulator, GntR family [Clostridium botulinum C str. Eklund] Length = 242 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D ++ E IS + + +Q L G V G+ Sbjct: 30 QEHDKLPSERELCEQYDISRSTVRQTMQELENNGYVYREHGKG 72 >gi|167769178|ref|ZP_02441231.1| hypothetical protein ANACOL_00501 [Anaerotruncus colihominis DSM 17241] gi|167668818|gb|EDS12948.1| hypothetical protein ANACOL_00501 [Anaerotruncus colihominis DSM 17241] Length = 123 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + L A + + +A I+ + K Q L + G++ +V G+ Sbjct: 23 LVALGALA-PGEQLPSVRALARDLGINPNTVQKAYQELERRGVICSVAGKG 72 >gi|167586735|ref|ZP_02379123.1| transcriptional regulator, IclR family protein [Burkholderia ubonensis Bu] Length = 269 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|134103427|ref|YP_001109088.1| transcriptional regulator/aminotransferase [Saccharopolyspora erythraea NRRL 2338] gi|291006033|ref|ZP_06564006.1| transcriptional regulator/aminotransferase [Saccharopolyspora erythraea NRRL 2338] gi|133916050|emb|CAM06163.1| transcriptional regulator/aminotransferase [Saccharopolyspora erythraea NRRL 2338] Length = 483 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +AE +S + + L+ L ++G E+ RG Sbjct: 55 RDLAETLGVSRTLVARTLERLRESGFAESRRGAG 88 >gi|118443452|ref|YP_878791.1| GntR family transcriptional regulator [Clostridium novyi NT] gi|118133908|gb|ABK60952.1| transcriptional regulator, GntR family [Clostridium novyi NT] Length = 244 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D ++ E IS + + +Q L G V G+ Sbjct: 32 QEHDKLPSERELCEQYDISRSTVRQTMQELENNGYVYREHGKG 74 >gi|322390859|ref|ZP_08064368.1| cyclic nucleotide-binding domain protein [Streptococcus parasanguinis ATCC 903] gi|321142444|gb|EFX37913.1| cyclic nucleotide-binding domain protein [Streptococcus parasanguinis ATCC 903] Length = 228 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 27/54 (50%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 H + + L +C + +++Q+A IS L ++++ +++ G+V+ Sbjct: 148 HYSVKERLASHFLKHCDENGTLKPKMNQLALRFGISYRHLSRVIKQMIEEGLVQ 201 >gi|315647850|ref|ZP_07900951.1| ROK family protein [Paenibacillus vortex V453] gi|315276496|gb|EFU39839.1| ROK family protein [Paenibacillus vortex V453] Length = 386 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVRLCRPADQI 73 I N+ P + IA+ +S + +I+ L + G V + GR R + I Sbjct: 21 IKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAGRG------RKSSLI 74 Query: 74 TILD 77 +LD Sbjct: 75 RLLD 78 >gi|307132876|ref|YP_003884892.1| transcriptional regulator [Dickeya dadantii 3937] gi|306530405|gb|ADN00336.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 401 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL-QPLV 49 I+ L+Y H + ++AE IS L +L L Sbjct: 291 IKALLYLGEHFQQEVTLIELAENSHISPSHLSYLLKHSLR 330 >gi|295398916|ref|ZP_06808898.1| biotin/acetyl-CoA-carboxylase ligase [Geobacillus thermoglucosidasius C56-YS93] gi|294978382|gb|EFG53978.1| biotin/acetyl-CoA-carboxylase ligase [Geobacillus thermoglucosidasius C56-YS93] Length = 329 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R L+ + N +I+E S ++K ++ L K G +E VR G R+ + Sbjct: 11 RKLLELFSEANGEFISGQKISEMLGCSRTAVWKHIEELRKEGFELEAVRRL--GYRIVKA 68 Query: 70 ADQITILDV 78 D++T ++ Sbjct: 69 PDKVTANEI 77 >gi|238059827|ref|ZP_04604536.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881638|gb|EEP70466.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 109 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R + A+ D P +++AE + L L L G+V GRR L P Sbjct: 22 RARLLLALR-DGPGYPAELAELLGTTRQNLSNHLTCLRGCGLVVAAPEGRRTRYELADPR 80 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99 + D++ + C S + DC Sbjct: 81 LSHALGDLLGLV-LAVDPVACPDSDEKDC 108 >gi|206560084|ref|YP_002230848.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198036125|emb|CAR52020.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 247 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L P ++++A + + + LV G + VR +RGG R I Sbjct: 12 LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 A + V + H + L + T+VL K A L +V + Sbjct: 71 A-----AAIDAPDPVVDIVHPHLVA--LRDASRETAVLGKIQGASVTYL------DVVES 117 Query: 134 RSSIK 138 +I+ Sbjct: 118 EQAIR 122 >gi|159040740|ref|YP_001539992.1| transcriptional regulator, TrmB [Caldivirga maquilingensis IC-167] gi|157919575|gb|ABW01002.1| transcriptional regulator, TrmB [Caldivirga maquilingensis IC-167] Length = 249 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + Y +RV Y + P IA+ + ++ +L+ +V+ G+++ G+R V + Sbjct: 16 SKYQLRV--YLTLVERGPLTAGLIAKYADVPSSKVYSVLKSMVRLGLIDVDSGKRPEVFV 73 Query: 67 CRPADQI------TILDVVK 80 +P ++ I D+V+ Sbjct: 74 AKPPKEMFNIVVSRINDIVE 93 >gi|333023081|ref|ZP_08451145.1| putative DeoR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332742933|gb|EGJ73374.1| putative DeoR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 424 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A+ ++ + + + L + G + TV+G GG RL Sbjct: 26 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 63 >gi|330988172|gb|EGH86275.1| GntR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 244 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 16/104 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 E + L L + AF +L Sbjct: 103 LLEFRLSL------EVEAAGLAAQRRSPEALLELKRAFDALLDG 140 >gi|332285535|ref|YP_004417446.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330429488|gb|AEC20822.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 238 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 ++E S + ++L L +G + G G RPA +I+ Sbjct: 41 RDLSERFNTSRGSVRRVLAALRDSGWITQAVGS--GTFAARPAHEIS 85 >gi|322373802|ref|ZP_08048337.1| adc operon repressor AdcR [Streptococcus sp. C150] gi|321277174|gb|EFX54244.1| adc operon repressor AdcR [Streptococcus sp. C150] Length = 151 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLC 67 +LM A + S++A+ +S+ + K ++ LVK G++E + + G L Sbjct: 46 HILMLLA---EGRKTNSELAKTLNVSQAAVTKAVKTLVKEGMLEAKKDKDDGRVTYFVLT 102 Query: 68 RPADQI 73 + A I Sbjct: 103 QEAQPI 108 >gi|313899580|ref|ZP_07833089.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2] gi|312955687|gb|EFR37346.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2] Length = 255 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +H + ++ +++E +SE + K L L G+++ GG L R Sbjct: 14 LHANGKVKVKELSERFSVSEDLIRKDLSALEAKGLLKK---AYGGAVLIRE 61 >gi|311069054|ref|YP_003973977.1| manganese transport transcriptional regulator [Bacillus atrophaeus 1942] gi|310869571|gb|ADP33046.1| manganese transport transcriptional regulator [Bacillus atrophaeus 1942] Length = 142 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|307710287|ref|ZP_07646728.1| putative transcriptional repressor [Streptococcus mitis SK564] gi|307618879|gb|EFN98014.1| putative transcriptional repressor [Streptococcus mitis SK564] Length = 146 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S++A +S+ + K ++ LVK G++ET + Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 >gi|257051219|ref|YP_003129052.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940] gi|256689982|gb|ACV10319.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940] Length = 356 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y A+ + + S IA+A +S+ +++ + + L G VE Sbjct: 25 TYLAVLENGEAKASTIADATGVSKRYVYSVCEELEDQGFVE 65 >gi|209885930|ref|YP_002289787.1| GntR-family transcriptional regulator [Oligotropha carboxidovorans OM5] gi|209874126|gb|ACI93922.1| GntR-family transcriptional regulator [Oligotropha carboxidovorans OM5] Length = 425 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + IR + A + I +A+ ++ + + L AG++E RGR Sbjct: 1 MQIMSSLEAAIRRGTFAA--GEALPPIRTLADKLGVNRNTVASAYRQLSDAGLIEG-RGR 57 Query: 61 RG 62 +G Sbjct: 58 QG 59 >gi|163752639|ref|ZP_02159812.1| birA bifunctional protein [Shewanella benthica KT99] gi|161327469|gb|EDP98682.1| birA bifunctional protein [Shewanella benthica KT99] Length = 320 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73 A+ + ++A+ IS + K + L G+ + +V+G+ G +L P I Sbjct: 14 ALAGELFVSGEELAKQAGISRTAISKHIDSLEDYGVEIFSVKGK--GYKLANPVSLI 68 >gi|71734123|ref|YP_276371.1| GntR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554676|gb|AAZ33887.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 249 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|71065512|ref|YP_264239.1| ArsR family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71038497|gb|AAZ18805.1| transcriptional regulator, ArsR family [Psychrobacter arcticus 273-4] Length = 124 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T ++ H +IA + + L L +AG V + R Sbjct: 13 LSQDTR--LKAFRLLVSHEPKGLAAGEIARQLSVPHNTMSTHLAVLARAGWVISER 66 >gi|15904019|ref|NP_359569.1| adc operon repressor AdcR [Streptococcus pneumoniae R6] gi|148998024|ref|ZP_01825537.1| Transcriptional repressor for Zn(2+)-responsive expression [Streptococcus pneumoniae SP11-BS70] gi|182685110|ref|YP_001836857.1| adc operon repressor AdcR [Streptococcus pneumoniae CGSP14] gi|183603586|ref|ZP_02964427.1| putative transcriptional repressor [Streptococcus pneumoniae CDC0288-04] gi|298501678|ref|YP_003723618.1| multiple antibiotic resistance operon transcriptional repressor MarR family protein [Streptococcus pneumoniae TCH8431/19A] gi|307128436|ref|YP_003880467.1| putative transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|15459680|gb|AAL00780.1| Transcriptional repressor for Zn(2+)-responsive expression [Streptococcus pneumoniae R6] gi|147756034|gb|EDK63077.1| Transcriptional repressor for Zn(2+)-responsive expression [Streptococcus pneumoniae SP11-BS70] gi|182630444|gb|ACB91392.1| adc operon repressor AdcR [Streptococcus pneumoniae CGSP14] gi|183574062|gb|EDT94590.1| putative transcriptional repressor [Streptococcus pneumoniae CDC0288-04] gi|298237273|gb|ADI68404.1| multiple antibiotic resistance operon transcriptional repressor MarR family protein [Streptococcus pneumoniae TCH8431/19A] gi|306485498|gb|ADM92367.1| putative transcriptional repressor [Streptococcus pneumoniae 670-6B] Length = 166 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S++A +S+ + K ++ LVK G++ET + Sbjct: 62 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 105 >gi|70726457|ref|YP_253371.1| hypothetical protein SH1456 [Staphylococcus haemolyticus JCSC1435] gi|68447181|dbj|BAE04765.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 323 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++K + IR ++Y H IA IS + K++ L K G +E++ + Sbjct: 1 MSKYSQDVIR-MLYM--HQSEYISGQYIANQLNISRAAVKKVIDQLKKDGCKIESINHK- 56 Query: 62 GGVRLCRPAD 71 G +L D Sbjct: 57 -GHQLNELPD 65 >gi|77408449|ref|ZP_00785188.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae COH1] gi|77172972|gb|EAO76102.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae COH1] Length = 214 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 19/29 (65%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVE 55 +S +A++ IS L +++ +VK G+++ Sbjct: 165 LSSLADSFGISYRHLLRVIHDMVKEGLIQ 193 >gi|152966810|ref|YP_001362594.1| MarR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151361327|gb|ABS04330.1| transcriptional regulator, MarR family [Kineococcus radiotolerans SRS30216] Length = 188 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ H P I +A ++ + + + + + G++++ G Sbjct: 49 KALIRLHRHG--PLTIKALAGHLGVTHSAMSQTVTAMRRDGLLDSAPG 94 >gi|329895947|ref|ZP_08271236.1| Glycolate utilization operon transcriptional activator GlcC [gamma proteobacterium IMCC3088] gi|328922079|gb|EGG29440.1| Glycolate utilization operon transcriptional activator GlcC [gamma proteobacterium IMCC3088] Length = 254 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A+ +S + + L+ L GI+ET RGR Sbjct: 35 RQLAQRLSVSRPVVREALKELRGRGIIETQRGRG 68 >gi|310658916|ref|YP_003936637.1| GntR family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825694|emb|CBH21732.1| transcriptional regulator, GntR family [Clostridium sticklandii] Length = 127 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 I + + +A+ ++ + K Q L + GI+ T+RG+ Sbjct: 30 IPGERLPSVRDMAKEMTLNPNTVQKAYQELERQGIISTLRGKG 72 >gi|240173236|ref|ZP_04751894.1| putative transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 119 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++++ Y + ++A A +S+ + L L AG+V + R Sbjct: 45 VKIMSYLFSSSAGEQTSGELAAALSLSDGTVSHHLAQLRNAGLVISDR 92 >gi|239987242|ref|ZP_04707906.1| putative AfsR-like transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 134 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 33/117 (28%) Query: 11 IRVLM-YCAIHNDYPNRISQI----------AEACCISELFLFKILQPLVKA---GIVET 56 +R L+ A+ + A+A L ++ L +A G VE+ Sbjct: 29 LRALLTVLALRPGRTVPAGHLVDEVWDGDPPADAAGA----LQALVGRLRRALGRGAVES 84 Query: 57 VRGRRGGVRLCRPADQITI-------LDVVKATEESFFVAECFASHKIDCPLVGSCG 106 V GG RL P D + + + +A E+ A CG Sbjct: 85 V---AGGYRLAAPPDAVDLHRFERLAGEGSRALEDGEPPA-----PSPPWGRPSPCG 133 >gi|218283597|ref|ZP_03489569.1| hypothetical protein EUBIFOR_02159 [Eubacterium biforme DSM 3989] gi|218215746|gb|EEC89284.1| hypothetical protein EUBIFOR_02159 [Eubacterium biforme DSM 3989] Length = 251 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +Y A + ++++E +S++ + K +Q L G V+ V+G+ Sbjct: 25 VYVAR--EKMPTENELSEQYNVSKITIRKAIQNLSDEGYVKKVQGKG 69 >gi|261408677|ref|YP_003244918.1| MarR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285140|gb|ACX67111.1| transcriptional regulator, MarR family [Paenibacillus sp. Y412MC10] Length = 158 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P ++ IAE +S+ KI L+KAG V Sbjct: 60 EQEPINLTSIAERINLSKGNTSKIANKLLKAGWVR 94 >gi|170693338|ref|ZP_02884498.1| transcriptional regulator, ArsR family [Burkholderia graminis C4D1M] gi|170141868|gb|EDT10036.1| transcriptional regulator, ArsR family [Burkholderia graminis C4D1M] Length = 111 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R ++ ++ + I E +S+ + K L+ L AG VE+ Sbjct: 14 RAILSLLAASEQ--SVGDIEEQLNLSQPSVSKHLRVLRDAGFVESR 57 >gi|163844673|ref|YP_001622328.1| hypothetical protein BSUIS_B0510 [Brucella suis ATCC 23445] gi|163675396|gb|ABY39506.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 257 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + IAE IS + + K + LVKAG++ VR G + RP +++ Sbjct: 45 GEALPPERDIAEYANISRVTVRKAMDDLVKAGLL--VRRHGSGTFVVRPGERV 95 >gi|157370157|ref|YP_001478146.1| manganese transport regulator MntR [Serratia proteamaculans 568] gi|157321921|gb|ABV41018.1| iron (metal) dependent repressor, DtxR family [Serratia proteamaculans 568] Length = 156 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 11/107 (10%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV--- 79 R + IA+ +S K + L AG+VE+ GV L +Q + V Sbjct: 54 REARTTDIAKRFGVSHPTAIKNIARLKSAGLVESR--PYRGVFLTEEGEQ--LAQKVRRR 109 Query: 80 -KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125 + + C L + L F L ++ Sbjct: 110 HRIV---VDLLVCLGVPNETAELDSEGIEHHISSDTLAVFEQYLQKH 153 >gi|16119548|ref|NP_396254.1| ArsR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15162102|gb|AAK90695.1| transcriptional regulator, ArsR family [Agrobacterium tumefaciens str. C58] Length = 119 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 27/118 (22%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L++ T + ++ + +AE +S + L+ L +AG+++ R Sbjct: 13 LSQETR--LHIVRILVVAGPDGMAAGAVAERAKVSPSNVSFHLKELERAGLIKQKR---- 66 Query: 63 GVRLCRPADQI-------TILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSV 110 A I + +++ F + +C A H C +CG+ + Sbjct: 67 ------EARSIIYTANYHCLGALIR-----FLMEDCCAGHPEICAQAVEVAACGVQTA 113 >gi|333023637|ref|ZP_08451701.1| putative GntR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332743489|gb|EGJ73930.1| putative GntR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 281 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67 +R + + + E +S + + +Q L G VETV G R L Sbjct: 94 ALRTALDSGELEPGRVYSAPALGERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 151 Query: 68 RPADQ-ITILDVVKATE 83 R AD + +V+ E Sbjct: 152 RTADDAAALAEVLFLIE 168 >gi|330816062|ref|YP_004359767.1| Transcriptional regulator, GntR family protein [Burkholderia gladioli BSR3] gi|327368455|gb|AEA59811.1| Transcriptional regulator, GntR family protein [Burkholderia gladioli BSR3] Length = 252 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 15/113 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR--------PA 70 D +++ + +S + + + + +G++ET G G L Sbjct: 35 RPGDKLPTETEVMASQGVSRTVVREAISRMQASGLIETRHGI-GSFVLAPERRRALGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 I T+ DV+ E + +EC + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRANEAD----LVALRRALDAIAQS 142 >gi|311695920|gb|ADP98793.1| GntR domain protein [marine bacterium HP15] Length = 252 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 1 MHLTKRTDYGI-RVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVR 58 M +++ Y + R+++ + + Q+A +S + + L L G++ET Sbjct: 1 MAISQEISYRLERLILDGGLAPEQKIPSERQLATRLGVSRAVIREALHELQGRGVIETRH 60 Query: 59 GRR 61 G+ Sbjct: 61 GKG 63 >gi|298293214|ref|YP_003695153.1| GntR family transcriptional regulator [Starkeya novella DSM 506] gi|296929725|gb|ADH90534.1| transcriptional regulator, GntR family [Starkeya novella DSM 506] Length = 225 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ I P +IAE +S + + L +AG+VE + R Sbjct: 22 KAIITLEITPGAPLSEQEIAERYKVSRQPVREAFIALARAGLVEILPRRG 71 >gi|257482102|ref|ZP_05636143.1| GntR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 208 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 73 ATIVTLRDVLAILE 86 >gi|302560721|ref|ZP_07313063.1| IclR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302478339|gb|EFL41432.1| IclR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 260 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + VL A D P R+ ++A+ + ++ +LQ L+ G V T Sbjct: 17 VEVLELLAARVDRPARLQELADTLGVPRSSMYALLQTLISRGWVRT 62 >gi|239833640|ref|ZP_04681968.1| regulatory protein ArsR [Ochrobactrum intermedium LMG 3301] gi|239821703|gb|EEQ93272.1| regulatory protein ArsR [Ochrobactrum intermedium LMG 3301] Length = 116 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C + + ++ EA I + L + L L +AG+VET R Sbjct: 39 RLMLACTLAEGE-YSVGELEEALGIHQPTLSQQLGVLREAGVVETRR 84 >gi|213965708|ref|ZP_03393901.1| transcriptional regulator, ArsR family [Corynebacterium amycolatum SK46] gi|213951659|gb|EEB63048.1| transcriptional regulator, ArsR family [Corynebacterium amycolatum SK46] Length = 230 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 + +L Y + P R+ +AE+ I+E L L+ L +A IV+ R G+ + P Sbjct: 23 LAILEYL--LKNGPTRVRSLAESTNIAESTLSNNLRRLREAEIVDVERQGKSATYSIANP 80 Query: 70 ADQITILDVV 79 +I V+ Sbjct: 81 ----SIRQVI 86 >gi|182420188|ref|ZP_02951419.1| transcriptional regulator, GntR family [Clostridium butyricum 5521] gi|237668245|ref|ZP_04528229.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375991|gb|EDT73581.1| transcriptional regulator, GntR family [Clostridium butyricum 5521] gi|237656593|gb|EEP54149.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT E BL5262] Length = 131 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + +++ I+ + K L + GI+ET+RG+ Sbjct: 32 NDKLPSVREMSTILTINPNTISKAYGELERDGIIETLRGKG 72 >gi|153832568|ref|ZP_01985235.1| GntR-family transcriptional regulator [Vibrio harveyi HY01] gi|148871134|gb|EDL70012.1| GntR-family transcriptional regulator [Vibrio harveyi HY01] Length = 238 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE IS + K L L GIV++ G Sbjct: 28 RELAEKYDISRFSVRKALSKLEAIGIVKSKVGSG 61 >gi|89100877|ref|ZP_01173727.1| transcriptional regulator, ArsR family protein [Bacillus sp. NRRL B-14911] gi|89084413|gb|EAR63564.1| transcriptional regulator, ArsR family protein [Bacillus sp. NRRL B-14911] Length = 118 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 R ++ + P +IA IS + K L L +A +++ + GR L Sbjct: 20 REVLRLVAEKERPVS--EIAGHFSISRTAVAKHLHILSEAKLIKGRKAGREKLYTL 73 >gi|115361057|ref|YP_778194.1| GntR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286385|gb|ABI91860.1| transcriptional regulator, GntR family [Burkholderia ambifaria AMMD] Length = 493 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 17/52 (32%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+ + A +A+ +S + LV G + + G Sbjct: 31 ALRIEIAKAQPGTRLPPTRDLAKELGVSRNTVTTAYSELVNEGCIVSRFGAG 82 >gi|330719755|gb|EGG98275.1| Transcriptional regulator2C ArsR family [gamma proteobacterium IMCC2047] Length = 114 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +RV+ Y + + I + +S+ + + L L AG+V + R Sbjct: 19 LRVM-YLLLERGELC-VCDIVSSLEVSQSVVSRHLAYLRNAGLVSSRR 64 >gi|320450559|ref|YP_004202655.1| HTH domain family [Thermus scotoductus SA-01] gi|320150728|gb|ADW22106.1| HTH domain family [Thermus scotoductus SA-01] Length = 198 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 13/72 (18%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV------RGRRGGVRL----CRPADQ 72 P ++AEA +S + + K LQ L G+V + RGR RL R A Sbjct: 19 RPYTAKELAEALGVSRVAVLKHLQDLEARGLVRSEVRKCLGRGRP--YRLYMAQDREAPY 76 Query: 73 ITI-LDVVKATE 83 ++ DV+K E Sbjct: 77 ASLCGDVLKEVE 88 >gi|312110540|ref|YP_003988856.1| transcriptional antiterminator, BglG [Geobacillus sp. Y4.1MC1] gi|311215641|gb|ADP74245.1| transcriptional antiterminator, BglG [Geobacillus sp. Y4.1MC1] Length = 638 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL-----VKAGIVETVRGRRGGVRL 66 +L+ + + P IA+ +S+ + ++ + K ++E++RG+ G L Sbjct: 11 ILLLLS-KSKKPVTSEWIAKELGVSDRTIRNEIKQMQQNIESKGILIESIRGK--GYVL 66 >gi|296129277|ref|YP_003636527.1| transcriptional regulator, GntR family with aminotransferase domain [Cellulomonas flavigena DSM 20109] gi|296021092|gb|ADG74328.1| transcriptional regulator, GntR family with aminotransferase domain [Cellulomonas flavigena DSM 20109] Length = 446 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + D + ++A A +S + Q L AG+V + RGR G L PA Sbjct: 32 LPGDRLPTVRELAGALGVSPATVGSAWQTLASAGLVIS-RGRAGTSVLPGPA 82 >gi|295695167|ref|YP_003588405.1| transcriptional regulator, GntR family [Bacillus tusciae DSM 2912] gi|295410769|gb|ADG05261.1| transcriptional regulator, GntR family [Bacillus tusciae DSM 2912] Length = 320 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +++E +S + + Q L G++ +++GR Sbjct: 33 GDKLPTERELSERLQVSRNTVSQAYQELEAEGVLTSIQGRG 73 >gi|312196815|ref|YP_004016876.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311228151|gb|ADP81006.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length = 237 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 RV++ A + +IA +S + + + L LV G+V T R RGG + Sbjct: 34 RVILDGAAAPGSTVPVDEIAAHYQVSRIPVREALMSLVGEGLV-THR-ARGGYTVA 87 >gi|302543192|ref|ZP_07295534.1| ArsR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460810|gb|EFL23903.1| ArsR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 118 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ A + P +++AEA + + L+ L G+V R Sbjct: 40 LLILARLREGPCPATELAEAVGMQQSACSHQLRLLRNLGLVTGTR 84 >gi|239927290|ref|ZP_04684243.1| MarR family regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291435631|ref|ZP_06575021.1| marR-family regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291338526|gb|EFE65482.1| marR-family regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 157 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 G+R ++ +H + P + Q+ A IS F+ +++ G+VE+V Sbjct: 47 GVRAVLAL-LHRNGPMTVPQMGRAQAISRQFVQRMVNDAAARGLVESV 93 >gi|163753991|ref|ZP_02161114.1| transcriptional regulator, DeoR family protein [Kordia algicida OT-1] gi|161326205|gb|EDP97531.1| transcriptional regulator, DeoR family protein [Kordia algicida OT-1] Length = 258 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 11/63 (17%) Query: 13 VLMYCA--------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG 63 V+ A + + +++AE +S +++ ++ L +AG+ V T+ GR G Sbjct: 24 VMTQLARLISILTLLRSKRLLTATELAEKYNVSVRTIYRDIRKLEEAGVPVYTIEGR--G 81 Query: 64 VRL 66 L Sbjct: 82 YSL 84 >gi|144901033|emb|CAM77897.1| transcriptional regulator, GntR family [Magnetospirillum gryphiswaldense MSR-1] Length = 244 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 17/125 (13%) Query: 8 DYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R+L A Q+AE +S + + LQ L G+++ V+G GG Sbjct: 20 RVADRILARIASGEWAVGQRLPGERQLAEDMGVSRVSVRAALQTLKTQGLLDAVQG--GG 77 Query: 64 VRLCRPAD--QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 R+ A ++ +VKA E+ + G + + R A NA Sbjct: 78 TRVVSNAACMDASLAQLVKANHETLADLA---------EIRGQIEVWAARRAAQNATPAH 128 Query: 122 LTQYS 126 L + S Sbjct: 129 LAELS 133 >gi|332281596|ref|ZP_08394009.1| conserved hypothetical protein [Shigella sp. D9] gi|332103948|gb|EGJ07294.1| conserved hypothetical protein [Shigella sp. D9] Length = 571 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 88 Query: 81 ATE 83 A E Sbjct: 89 ALE 91 >gi|332094601|gb|EGI99647.1| bacterial extracellular solute-binding protein, family 5 [Shigella boydii 5216-82] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|323965132|gb|EGB60591.1| extracellular solute-binding protein [Escherichia coli M863] gi|327254773|gb|EGE66389.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli STEC_7v] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|323191365|gb|EFZ76628.1| bacterial extracellular solute-binding protein, family 5 Middle protein [Escherichia coli RN587/1] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|320197081|gb|EFW71700.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Escherichia coli WV_060327] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|320186075|gb|EFW60820.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Shigella flexneri CDC 796-83] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|331681840|ref|ZP_08382473.1| putative extracellular solute-binding protein [Escherichia coli H299] gi|331081042|gb|EGI52207.1| putative extracellular solute-binding protein [Escherichia coli H299] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|331671991|ref|ZP_08372787.1| putative extracellular solute-binding protein [Escherichia coli TA280] gi|331070980|gb|EGI42339.1| putative extracellular solute-binding protein [Escherichia coli TA280] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|331661826|ref|ZP_08362749.1| putative extracellular solute-binding protein [Escherichia coli TA143] gi|331060248|gb|EGI32212.1| putative extracellular solute-binding protein [Escherichia coli TA143] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|300812572|ref|ZP_07092989.1| transcriptional regulator, ArsR family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496445|gb|EFK31550.1| transcriptional regulator, ArsR family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 100 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I +L Y H + P I +S+ + K L L K V+ Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKYDFVQ 65 >gi|300937062|ref|ZP_07151928.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 21-1] gi|300457893|gb|EFK21386.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 21-1] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|300900517|ref|ZP_07118684.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 198-1] gi|300355998|gb|EFJ71868.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 198-1] Length = 457 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|300958013|ref|ZP_07170177.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 175-1] gi|300315280|gb|EFJ65064.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 175-1] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|301025650|ref|ZP_07189170.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 196-1] gi|299880031|gb|EFI88242.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 196-1] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|293603747|ref|ZP_06686165.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] gi|292817850|gb|EFF76913.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] Length = 380 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 21/46 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ L+ I + P +++ +S + ++ L + G++ + Sbjct: 55 LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHS 100 >gi|260450368|gb|ACX40790.1| extracellular solute-binding protein family 5 [Escherichia coli DH1] gi|315135127|dbj|BAJ42286.1| putative transporter subunit:periplasmic-binding component of ABC superfamily [Escherichia coli DH1] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|258652482|ref|YP_003201638.1| ArsR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555707|gb|ACV78649.1| transcriptional regulator, ArsR family [Nakamurella multipartita DSM 44233] Length = 130 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R ++ P ++ +A I + + K L+ L + G+V+ RGR+ RL Sbjct: 29 RQILDLLAGGGRPVN--ELVQALGIPQPLVSKHLRVLREVGLVQVHDRGRQRVYRLDGEP 86 >gi|260853668|ref|YP_003227559.1| putative transporter subunit [Escherichia coli O26:H11 str. 11368] gi|260866606|ref|YP_003233008.1| putative transporter subunit [Escherichia coli O111:H- str. 11128] gi|257752317|dbj|BAI23819.1| predicted transporter subunit [Escherichia coli O26:H11 str. 11368] gi|257762962|dbj|BAI34457.1| predicted transporter subunit [Escherichia coli O111:H- str. 11128] gi|323153482|gb|EFZ39736.1| bacterial extracellular solute-binding s, family 5 Middle family protein [Escherichia coli EPECa14] gi|323178286|gb|EFZ63864.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli 1180] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|257063051|ref|YP_003142723.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790704|gb|ACV21374.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 126 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++ ++ + K+ + + K G V T RG+ Sbjct: 30 LPGQQLPTVRELCAELNVNYNTVSKVYKDIEKDGYVITRRGKG 72 >gi|237798504|ref|ZP_04586965.1| GntR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|298488394|ref|ZP_07006425.1| Predicted D-glucarate or D-galactorate regulator, GntR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157019|gb|EFH98108.1| Predicted D-glucarate or D-galactorate regulator, GntR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|331021356|gb|EGI01413.1| GntR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 249 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|261368571|ref|ZP_05981454.1| arabinose metabolism transcriptional repressor [Subdoligranulum variabile DSM 15176] gi|282569288|gb|EFB74823.1| arabinose metabolism transcriptional repressor [Subdoligranulum variabile DSM 15176] Length = 354 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 21/48 (43%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L++ H +++E +S + LQ L + G+++ +G Sbjct: 16 LLHQGQHGYKLPTEQELSERYGLSRQTVRHALQMLEQEGLIQRRQGSG 63 >gi|218703729|ref|YP_002411248.1| hypothetical protein ECUMN_0485 [Escherichia coli UMN026] gi|293403566|ref|ZP_06647657.1| ybaE protein [Escherichia coli FVEC1412] gi|298379178|ref|ZP_06989059.1| ybaE protein [Escherichia coli FVEC1302] gi|218430826|emb|CAR11700.1| conserved hypothetical protein [Escherichia coli UMN026] gi|291429419|gb|EFF02439.1| ybaE protein [Escherichia coli FVEC1412] gi|298280291|gb|EFI21795.1| ybaE protein [Escherichia coli FVEC1302] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|218688309|ref|YP_002396521.1| hypothetical protein ECED1_0469 [Escherichia coli ED1a] gi|218425873|emb|CAR06679.1| conserved hypothetical protein [Escherichia coli ED1a] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|218698643|ref|YP_002406272.1| hypothetical protein ECIAI39_0228 [Escherichia coli IAI39] gi|218368629|emb|CAR16368.1| conserved hypothetical protein [Escherichia coli IAI39] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|218553012|ref|YP_002385925.1| hypothetical protein ECIAI1_0449 [Escherichia coli IAI1] gi|218359780|emb|CAQ97321.1| conserved hypothetical protein [Escherichia coli IAI1] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|218693908|ref|YP_002401575.1| hypothetical protein EC55989_0459 [Escherichia coli 55989] gi|256020417|ref|ZP_05434282.1| hypothetical protein ShiD9_15975 [Shigella sp. D9] gi|300924172|ref|ZP_07140164.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 182-1] gi|301330688|ref|ZP_07223290.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 78-1] gi|218350640|emb|CAU96332.1| conserved hypothetical protein [Escherichia coli 55989] gi|300419625|gb|EFK02936.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 182-1] gi|300843349|gb|EFK71109.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 78-1] gi|320201689|gb|EFW76265.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Escherichia coli EC4100B] gi|323945351|gb|EGB41407.1| bacterial extracellular solute-binding protein [Escherichia coli H120] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|167949179|ref|ZP_02536253.1| Putative Transcriptional Regulator, ArsR family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 126 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 6/55 (10%) Query: 10 GIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++ + + D + +I E S+ + + L+ L IV + + Sbjct: 36 ALKAMAHPLRWKILCSLGDSELSVGEIVERTGTSQSNISQHLEQLRNKNIVVSRK 90 >gi|170683749|ref|YP_001742589.1| solute-binding family 5 protein [Escherichia coli SMS-3-5] gi|306813087|ref|ZP_07447280.1| hypothetical protein ECNC101_14282 [Escherichia coli NC101] gi|170521467|gb|ACB19645.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli SMS-3-5] gi|305853850|gb|EFM54289.1| hypothetical protein ECNC101_14282 [Escherichia coli NC101] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|152965925|ref|YP_001361709.1| hypothetical protein Krad_1959 [Kineococcus radiotolerans SRS30216] gi|151360442|gb|ABS03445.1| Helix-turn-helix type 11 domain protein [Kineococcus radiotolerans SRS30216] Length = 234 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 11 IRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L +Q+A +S + + + L +AG+ V G GG L Sbjct: 7 LHALSEELRRAGPRGRTAAQLAGWLEVSTRTVKRDVAALQQAGLPVWAQSGPGGGYVL 64 >gi|153003475|ref|YP_001377800.1| regulatory protein ArsR [Anaeromyxobacter sp. Fw109-5] gi|152027048|gb|ABS24816.1| regulatory protein ArsR [Anaeromyxobacter sp. Fw109-5] Length = 123 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 9/71 (12%) Query: 12 RVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP 69 R ++ A P R++ +A +S + K ++ L +AG+V T RGR + L Sbjct: 33 RAILDQLAR---GPARVTDVAAPFAMSLNAVSKHIKVLERAGLVRRTRRGREHTLELEPA 89 Query: 70 ADQITILDVVK 80 + +VV+ Sbjct: 90 P----LREVVR 96 >gi|117622705|ref|YP_851618.1| hypothetical protein APECO1_1566 [Escherichia coli APEC O1] gi|218557355|ref|YP_002390268.1| hypothetical protein ECS88_0442 [Escherichia coli S88] gi|227884544|ref|ZP_04002349.1| solute-binding family 5 protein [Escherichia coli 83972] gi|300987955|ref|ZP_07178471.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 45-1] gi|301049652|ref|ZP_07196601.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 185-1] gi|115511829|gb|ABI99903.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218364124|emb|CAR01789.1| conserved hypothetical protein [Escherichia coli S88] gi|227838630|gb|EEJ49096.1| solute-binding family 5 protein [Escherichia coli 83972] gi|294492028|gb|ADE90784.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli IHE3034] gi|300298589|gb|EFJ54974.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 185-1] gi|300407625|gb|EFJ91163.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 45-1] gi|307552352|gb|ADN45127.1| putative extracellular solute-binding protein YbaE [Escherichia coli ABU 83972] gi|307628085|gb|ADN72389.1| hypothetical protein UM146_15130 [Escherichia coli UM146] gi|315289837|gb|EFU49227.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 110-3] gi|315294221|gb|EFU53572.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 153-1] gi|323952943|gb|EGB48811.1| extracellular solute-binding protein [Escherichia coli H252] gi|323958638|gb|EGB54341.1| extracellular solute-binding protein [Escherichia coli H263] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|91209519|ref|YP_539505.1| hypothetical protein UTI89_C0473 [Escherichia coli UTI89] gi|237707560|ref|ZP_04538041.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91071093|gb|ABE05974.1| hypothetical protein YbaE [Escherichia coli UTI89] gi|226898770|gb|EEH85029.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 571 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 88 Query: 81 ATE 83 A E Sbjct: 89 ALE 91 >gi|74311025|ref|YP_309444.1| hypothetical protein SSON_0433 [Shigella sonnei Ss046] gi|73854502|gb|AAZ87209.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323164248|gb|EFZ50055.1| bacterial extracellular solute-binding s, family 5 Middle family protein [Shigella sonnei 53G] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|33593487|ref|NP_881131.1| heat-inducible transcription repressor [Bordetella pertussis Tohama I] gi|33598007|ref|NP_885650.1| heat-inducible transcription repressor [Bordetella parapertussis 12822] gi|33602913|ref|NP_890473.1| heat-inducible transcription repressor [Bordetella bronchiseptica RB50] gi|46576476|sp|Q7VVX7|HRCA_BORPE RecName: Full=Heat-inducible transcription repressor hrcA gi|46576485|sp|Q7W514|HRCA_BORPA RecName: Full=Heat-inducible transcription repressor hrcA gi|46576493|sp|Q7WGH9|HRCA_BORBR RecName: Full=Heat-inducible transcription repressor hrcA gi|33568544|emb|CAE34302.1| heat-inducible transcription repressor [Bordetella bronchiseptica RB50] gi|33572843|emb|CAE42776.1| heat-inducible transcription repressor [Bordetella pertussis Tohama I] gi|33574436|emb|CAE38774.1| heat-inducible transcription repressor [Bordetella parapertussis] gi|332382895|gb|AEE67742.1| heat-inducible transcription repressor [Bordetella pertussis CS] Length = 334 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 21/46 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ L+ I + P +++ +S + ++ L + G++ + Sbjct: 9 LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHS 54 >gi|32474234|ref|NP_867228.1| ribonuclease BN [Rhodopirellula baltica SH 1] gi|32444772|emb|CAD74773.1| probable ribonuclease BN [Rhodopirellula baltica SH 1] Length = 577 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI---VETVRGRRGGVRLCRPAD 71 + A ++++ +S + ++ L++A V T G+ + L RPAD Sbjct: 444 VAIAFAEGEAVGRQELSDRLGLSSRVVHEMETRLIEANFLRRVVTGAGQENQLTLARPAD 503 Query: 72 QITILDVVK 80 I + +V++ Sbjct: 504 NILLAEVMR 512 >gi|16128430|ref|NP_414979.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli str. K-12 substr. MG1655] gi|89107315|ref|AP_001095.1| predicted transporter subunit [Escherichia coli str. K-12 substr. W3110] gi|170080031|ref|YP_001729351.1| ABC transporter periplasmic-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|238899733|ref|YP_002925529.1| putative transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli BW2952] gi|256023936|ref|ZP_05437801.1| putative transporter subunit: periplasmic-binding component of ABC superfamily protein [Escherichia sp. 4_1_40B] gi|300947902|ref|ZP_07162050.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 116-1] gi|301647371|ref|ZP_07247183.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 146-1] gi|307137090|ref|ZP_07496446.1| putative transporter subunit: periplasmic-binding component of ABC superfamily protein [Escherichia coli H736] gi|331640965|ref|ZP_08342100.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli H736] gi|2506605|sp|P46890|YBAE_ECOLI RecName: Full=Uncharacterized protein ybaE gi|1580716|dbj|BAA11649.1| YbaE [Escherichia coli W3110] gi|1773129|gb|AAB40201.1| hypothetical protein [Escherichia coli] gi|1786650|gb|AAC73548.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli str. K-12 substr. MG1655] gi|85674585|dbj|BAE76225.1| predicted transporter subunit [Escherichia coli str. K12 substr. W3110] gi|169887866|gb|ACB01573.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli str. K-12 substr. DH10B] gi|238863245|gb|ACR65243.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli BW2952] gi|300452502|gb|EFK16122.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 116-1] gi|301074516|gb|EFK89322.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 146-1] gi|315616614|gb|EFU97231.1| bacterial extracellular solute-binding s, family 5 Middle family protein [Escherichia coli 3431] gi|323943252|gb|EGB39408.1| extracellular solute-binding protein [Escherichia coli E482] gi|331037763|gb|EGI09983.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli H736] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|1019765|emb|CAA91182.1| ybaE [Escherichia coli K-12] Length = 358 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|84502318|ref|ZP_01000466.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] gi|84389678|gb|EAQ02397.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] Length = 156 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + A+H D +A+ +S+ L++ L+ L AGI++ R Sbjct: 10 LLMALHADASASQRALADRIGLSQNALWRRLKRLESAGIIKGSR 53 >gi|157159972|ref|YP_001457290.1| solute-binding family 5 protein [Escherichia coli HS] gi|188493569|ref|ZP_03000839.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli 53638] gi|312970542|ref|ZP_07784723.1| bacterial extracellular solute-binding s, family 5 Middle family protein [Escherichia coli 1827-70] gi|157065652|gb|ABV04907.1| bacterial extracellular solute-binding proteins, family 5 [Escherichia coli HS] gi|188488768|gb|EDU63871.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli 53638] gi|310337191|gb|EFQ02329.1| bacterial extracellular solute-binding s, family 5 Middle family protein [Escherichia coli 1827-70] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|157155849|ref|YP_001461632.1| solute-binding family 5 protein [Escherichia coli E24377A] gi|157077879|gb|ABV17587.1| bacterial extracellular solute-binding proteins, family 5 [Escherichia coli E24377A] gi|324116933|gb|EGC10846.1| extracellular solute-binding protein [Escherichia coli E1167] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|82542933|ref|YP_406880.1| hypothetical protein SBO_0339 [Shigella boydii Sb227] gi|187730849|ref|YP_001879156.1| extracellular solute-binding protein [Shigella boydii CDC 3083-94] gi|191168229|ref|ZP_03030023.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli B7A] gi|193064173|ref|ZP_03045257.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli E22] gi|193067556|ref|ZP_03048523.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli E110019] gi|194429027|ref|ZP_03061559.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli B171] gi|260842646|ref|YP_003220424.1| putative transporter subunit [Escherichia coli O103:H2 str. 12009] gi|293418516|ref|ZP_06660951.1| ybaE protein [Escherichia coli B088] gi|300820309|ref|ZP_07100461.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 119-7] gi|300903287|ref|ZP_07121215.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 84-1] gi|301301596|ref|ZP_07207731.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 124-1] gi|307312177|ref|ZP_07591813.1| extracellular solute-binding protein family 5 [Escherichia coli W] gi|309794822|ref|ZP_07689243.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 145-7] gi|331666801|ref|ZP_08367675.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli TA271] gi|331676117|ref|ZP_08376829.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli H591] gi|81244344|gb|ABB65052.1| conserved hypothetical protein [Shigella boydii Sb227] gi|187427841|gb|ACD07115.1| bacterial extracellular solute-binding protein, family 5 [Shigella boydii CDC 3083-94] gi|190901689|gb|EDV61444.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli B7A] gi|192929202|gb|EDV82812.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli E22] gi|192958968|gb|EDV89404.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli E110019] gi|194412964|gb|EDX29254.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli B171] gi|257757793|dbj|BAI29290.1| predicted transporter subunit [Escherichia coli O103:H2 str. 12009] gi|291325044|gb|EFE64459.1| ybaE protein [Escherichia coli B088] gi|300404582|gb|EFJ88120.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 84-1] gi|300527094|gb|EFK48163.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 119-7] gi|300843093|gb|EFK70853.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 124-1] gi|306907679|gb|EFN38181.1| extracellular solute-binding protein family 5 [Escherichia coli W] gi|308121475|gb|EFO58737.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 145-7] gi|309700706|emb|CBJ00002.1| putative substrate-binding protein [Escherichia coli ETEC H10407] gi|315059725|gb|ADT74052.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli W] gi|315256273|gb|EFU36241.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 85-1] gi|320176588|gb|EFW51632.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [Shigella dysenteriae CDC 74-1112] gi|323160444|gb|EFZ46392.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli E128010] gi|323170532|gb|EFZ56182.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli LT-68] gi|323184724|gb|EFZ70095.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli 1357] gi|323379710|gb|ADX51978.1| extracellular solute-binding protein family 5 [Escherichia coli KO11] gi|323938631|gb|EGB34880.1| bacterial extracellular solute-binding protein [Escherichia coli E1520] gi|324016694|gb|EGB85913.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 117-3] gi|331066025|gb|EGI37909.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli TA271] gi|331076175|gb|EGI47457.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli H591] gi|332098590|gb|EGJ03556.1| bacterial extracellular solute-binding protein, family 5 [Shigella boydii 3594-74] Length = 566 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|317490089|ref|ZP_07948578.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|316910794|gb|EFV32414.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length = 128 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + K+ Q L G++ + RG+R Sbjct: 33 RPGDTLPTVRELAIQLGVNYNTIHKVYQDLETDGLILSGRGKR 75 >gi|300786195|ref|YP_003766486.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795709|gb|ADJ46084.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] Length = 326 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 + +A+ ++ + + L + G VE G +GG RL Sbjct: 22 TGADLADRLGVTARTVRTDIGKLRELGYPVEAAPGVQGGYRLG 64 >gi|289168854|ref|YP_003447123.1| Zn(2+)-responsive AdcR transcriptional repressor [Streptococcus mitis B6] gi|303259662|ref|ZP_07345638.1| adc operon repressor AdcR [Streptococcus pneumoniae SP-BS293] gi|303264565|ref|ZP_07350484.1| adc operon repressor AdcR [Streptococcus pneumoniae BS397] gi|307707837|ref|ZP_07644314.1| putative transcriptional repressor [Streptococcus mitis NCTC 12261] gi|307711164|ref|ZP_07647586.1| putative transcriptional repressor [Streptococcus mitis SK321] gi|288908421|emb|CBJ23263.1| Zn(2+)-responsive AdcR transcriptional repressor [Streptococcus mitis B6] gi|302639214|gb|EFL69673.1| adc operon repressor AdcR [Streptococcus pneumoniae SP-BS293] gi|302645935|gb|EFL76163.1| adc operon repressor AdcR [Streptococcus pneumoniae BS397] gi|307616097|gb|EFN95293.1| putative transcriptional repressor [Streptococcus mitis NCTC 12261] gi|307617126|gb|EFN96304.1| putative transcriptional repressor [Streptococcus mitis SK321] Length = 146 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S++A +S+ + K ++ LVK G++ET + Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 >gi|259489657|tpe|CBF90109.1| TPA: toxin biosynthesis regulatory protein AflJ, putative (AFU_orthologue; AFUA_4G14550) [Aspergillus nidulans FGSC A4] Length = 479 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 15/33 (45%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I +AE + E L +I++ AG ++ Sbjct: 103 GTVPIKDVAELAGVPETHLSRIIRMTATAGFLD 135 >gi|295399011|ref|ZP_06808993.1| transcriptional regulator, GntR family [Geobacillus thermoglucosidasius C56-YS93] gi|312110383|ref|YP_003988699.1| GntR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978477|gb|EFG54073.1| transcriptional regulator, GntR family [Geobacillus thermoglucosidasius C56-YS93] gi|311215484|gb|ADP74088.1| transcriptional regulator, GntR family [Geobacillus sp. Y4.1MC1] Length = 242 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++AE IS + + + + LV G + RG+ Sbjct: 27 LQPGEMIPSERELAETYDISRMTVRQAINNLVNDGYLVRKRGKG 70 >gi|229491070|ref|ZP_04384901.1| regulatory protein, ArsR [Rhodococcus erythropolis SK121] gi|229322051|gb|EEN87841.1| regulatory protein, ArsR [Rhodococcus erythropolis SK121] Length = 140 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D ++++AE + + L L A +V T R Sbjct: 41 DRECSVNELAERVGKPAPSVSQHLAKLRMARLVRTRR 77 >gi|291536454|emb|CBL09566.1| Transcriptional regulators [Roseburia intestinalis M50/1] gi|291538676|emb|CBL11787.1| Transcriptional regulators [Roseburia intestinalis XB6B4] Length = 147 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 9 YGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 YG+R + +Y H + + E +S+ + K + L + G +E Sbjct: 29 YGLRHVELDILYLISHEKQKDTAKDLIEIQHLSKAHISKSVDNLKQHGYIE 79 >gi|197124386|ref|YP_002136337.1| hypothetical protein AnaeK_4003 [Anaeromyxobacter sp. K] gi|196174235|gb|ACG75208.1| Helix-turn-helix type 11 domain protein [Anaeromyxobacter sp. K] Length = 221 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +QIAE ++ +++ L L A + + +GR GG L R Sbjct: 21 VTAAQIAERFGVTLRTVYRDLDALRSADLPLHAEQGRGGGYALDR 65 >gi|145592011|ref|YP_001154013.1| transcriptional regulator, TrmB [Pyrobaculum arsenaticum DSM 13514] gi|145283779|gb|ABP51361.1| transcriptional regulator, TrmB [Pyrobaculum arsenaticum DSM 13514] Length = 239 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR----PA 70 +Y A+ ++++ I ++ L+ L + G++ GGVR + P Sbjct: 20 IYLALVERGEMTARELSDLLGIPYTKIYAHLERLERLGLIT----PTGGVRPAKFRATPP 75 Query: 71 DQITILDVVKAT 82 + V + Sbjct: 76 VE-----VYRIL 82 >gi|172060638|ref|YP_001808290.1| IclR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993155|gb|ACB64074.1| transcriptional regulator, IclR family [Burkholderia ambifaria MC40-6] Length = 247 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L P ++++A + + + LV G + VR +RGG R I Sbjct: 12 LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + AT+ + H L + T+VL K A L +V + Sbjct: 71 AAA--IDATDPVVDIV-----HPHLVALRDASRETAVLGKIQGASVTYL------DVVES 117 Query: 134 RSSIK 138 +I+ Sbjct: 118 EQAIR 122 >gi|110808146|ref|YP_691666.1| hypothetical protein SFV_4388 [Shigella flexneri 5 str. 8401] gi|110617694|gb|ABF06361.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 231 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSQLRECGVLTQV---GNDYVIARKPD 72 >gi|23011566|ref|ZP_00051889.1| COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Magnetospirillum magnetotacticum MS-1] Length = 263 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 P +AE + +L + L+ L + G+++ RGR Sbjct: 172 PVTHEVLAELLGVQRSYLTRTLRTLQQQGLIQVRRGR 208 >gi|327308844|ref|XP_003239113.1| hypothetical protein TERG_01097 [Trichophyton rubrum CBS 118892] gi|326459369|gb|EGD84822.1| hypothetical protein TERG_01097 [Trichophyton rubrum CBS 118892] Length = 780 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++++ + YP R+ + A+ S + +I L K G +E G + Sbjct: 515 RQALKIII----EDGYPLRVKEFAQRLHCSGNEVVQITDLLRKNGFLEPTPGSK 564 >gi|325965395|ref|YP_004243300.1| ArsR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323471482|gb|ADX75166.1| transcriptional regulator, ArsR family [Arthrobacter phenanthrenivorans Sphe3] Length = 108 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 19/104 (18%) Query: 9 YGI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 Y + R+L+ A YP S +A+ +S + L L G+V V GRR Sbjct: 15 YAVSDPTRARILLALADAPAYP---SDLADTLSVSRQSMSNHLTCLRGCGLVVAVPDGRR 71 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 L + ++ + C G+C Sbjct: 72 TRYELA----DARLGHAIRDLLGVVLAVD-----PACCAPDGTC 106 >gi|320322584|gb|EFW78677.1| GntR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330163|gb|EFW86149.1| GntR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875401|gb|EGH09550.1| GntR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 228 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 73 ATIVTLRDVLAILE 86 >gi|212635256|ref|YP_002311781.1| AraC family transcriptional regulator [Shewanella piezotolerans WP3] gi|212556740|gb|ACJ29194.1| Transcriptional regulator, AraC family [Shewanella piezotolerans WP3] Length = 302 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 16/34 (47%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 +L Y A + D I +A+ + ++ K+ Q Sbjct: 193 ILKYIADNYDQKITIDDVAKLTGLHPNYVMKLFQ 226 >gi|153008303|ref|YP_001369518.1| GntR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560191|gb|ABS13689.1| putative transcriptional regulator, GntR family [Ochrobactrum anthropi ATCC 49188] Length = 497 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AEA +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAEAMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|325261217|ref|ZP_08127955.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. D5] gi|324032671|gb|EGB93948.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. D5] Length = 326 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATE 83 Q+ E +S ++K + L + G VE VR R G + D I+ ++V + Sbjct: 16 VSGQQLCEKLGVSRTAVWKAINQLKEEGYQVEAVRNR--GYHIVESPDVISKEEIVSMID 73 Query: 84 ESFF 87 ++ Sbjct: 74 TNWA 77 >gi|320335394|ref|YP_004172105.1| 4-alpha-glucanotransferase [Deinococcus maricopensis DSM 21211] gi|319756683|gb|ADV68440.1| 4-alpha-glucanotransferase [Deinococcus maricopensis DSM 21211] Length = 650 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 52/145 (35%) Query: 10 GIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGRR 61 IR L+ A+ D P Q+ A ++E L L G+ RG Sbjct: 508 AIRPNALLALAL-PDTPATAEQLDAALRVAETHL------LTPLGLRTLSPEDAAYRGAY 560 Query: 62 GGVRLCRPAD--QITI---------------LDVVKATEESFFVAECFASHKIDCPLVGS 104 GG RL R A Q T+ DVV+A Sbjct: 561 GGHRLVRDAAYHQGTVWPWPLGAYVTLLLRRGDVVRA-------------------RWAL 601 Query: 105 CGLTSVLRKA-LNAFFDVLTQYSIE 128 GL + L +A + +V ++ Sbjct: 602 AGLRAHLWEAGVGGVSEVFAGTTLA 626 >gi|296115392|ref|ZP_06834028.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter hansenii ATCC 23769] gi|295978053|gb|EFG84795.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter hansenii ATCC 23769] Length = 117 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + + H +A + + + L L +AG++ + R Sbjct: 13 LSQSTR--LEIFRLLVRHEPDGLPAGDVARHLDVPQNTISAHLATLTRAGLLTSQR 66 >gi|253581181|ref|ZP_04858439.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251847538|gb|EES75510.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 363 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 AI ++++ +S + K L L + G VE GR Sbjct: 24 AIRPGEKLPSENELSQKYSLSRHTVRKALGILEQDGYVEAFHGRG 68 >gi|229822382|ref|YP_002883908.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] gi|229568295|gb|ACQ82146.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae DSM 12333] Length = 260 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +A +SE + + + L +AG+ + G GG L A Sbjct: 27 LARELEVSERTVKRDIAALQQAGLPIWAQSGPGGGYVLAGSAS 69 >gi|217069793|gb|ACJ83258.1| transcriptional regulator [Achromobacter sp. SY8] Length = 151 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 27/114 (23%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L++ T + + + IAE + + L L +AG++ RG Sbjct: 36 LSQPTR--LEIFRFLMAREPEGAPAGLIAETVEGPHNTVSQHLSVLARAGLI---RG--- 87 Query: 63 GVRLCRPADQITILDVVKA---TEE---SFFVAECFASHKIDC-----PLVGSC 105 R I + +A SF + +C H C L G C Sbjct: 88 ----DRQGRSI----IYRADVGVMGTLMSFMLTDCCHGHPEACAPVIAALAGHC 133 >gi|254426650|ref|ZP_05040364.1| transcriptional regulator, ArsR family protein [Synechococcus sp. PCC 7335] gi|196187402|gb|EDX82370.1| transcriptional regulator, ArsR family protein [Synechococcus sp. PCC 7335] Length = 107 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R L+ + P Q+A +S + + L L K G+V R GR+ RL Sbjct: 20 RSLLDHLQKGEQPV--KQLAAPFDMSLPAISQHLSVLCKVGLVTQRREGRQRFYRLTPEP 77 Query: 71 -DQIT 74 QI+ Sbjct: 78 LKQIS 82 >gi|167771693|ref|ZP_02443746.1| hypothetical protein ANACOL_03065 [Anaerotruncus colihominis DSM 17241] gi|167666333|gb|EDS10463.1| hypothetical protein ANACOL_03065 [Anaerotruncus colihominis DSM 17241] Length = 242 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +AE+ +S + + L+ L + G++++ G GG + +P Sbjct: 38 GERLPSEQALAESFGVSRNVMRESLKLLKERGLIDSRMG--GGSYITKP 84 >gi|171186382|ref|YP_001795301.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus V24Sta] gi|170935594|gb|ACB40855.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus V24Sta] Length = 116 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R ++ S+I + + + + K L+ L +AG VE RGR V L R Sbjct: 51 RAILRLLEERQGVVYQSEIVKELGLPKSTVHKALRRLSEAGYVEIQKRGRLNLVVLKRAT 110 Query: 71 DQIT 74 + + Sbjct: 111 SEAS 114 >gi|114800550|ref|YP_760335.1| ArsR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114740724|gb|ABI78849.1| transcriptional regulator, ArsR family [Hyphomonas neptunium ATCC 15444] Length = 93 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+ + CA+ ++ ++Q+A+ S+ + + L L AG+VE+ R Sbjct: 20 RLKIMCAL-SEGEQPVNQLADMTGQSQSAVSQHLAKLRAAGLVESRR 65 >gi|325523665|gb|EGD01937.1| IclR family transcriptional regulator [Burkholderia sp. TJI49] Length = 269 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|317402177|gb|EFV82768.1| heat-inducible transcription repressor hrcA [Achromobacter xylosoxidans C54] Length = 334 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 21/46 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 ++ L+ I + P +++ +S + ++ L + G++ + Sbjct: 9 LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHS 54 >gi|302556419|ref|ZP_07308761.1| GntR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302474037|gb|EFL37130.1| GntR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 126 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A + ++AE+ ++ + + Q L G++E RGR Sbjct: 30 AAPGERLPPAREVAESLGVNVHTVLRGYQRLRDEGLIELRRGRG 73 >gi|297162769|gb|ADI12481.1| putative transcriptional regulator, ArsR family protein [Streptomyces bingchenggensis BCW-1] Length = 361 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 P+ S++A +S + + L L +AG++ + R GR L P Sbjct: 299 GPHTTSELAHTWELSPPEVSRHLAVLRRAGLLTSRRHGRYVRYTLNLP 346 >gi|229916263|ref|YP_002884909.1| manganese transport transcriptional regulator [Exiguobacterium sp. AT1b] gi|229467692|gb|ACQ69464.1| iron (metal) dependent repressor, DtxR family [Exiguobacterium sp. AT1b] Length = 142 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 21/103 (20%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y + R+S IAE + + K++Q L + G++ T +G++ G R Sbjct: 13 IYLLMSEKGYARVSDIAEHLGVHPSSVTKMVQKLDREEYLVYEKYRGLMLTKKGQKVGKR 72 Query: 66 LC-RPA------DQITI--LDVVKATEESFFVAECFASHKIDC 99 L R A I + DV + E + +S+ +DC Sbjct: 73 LVERHAMLESFLRLIGVDEADVYEDVEG---IEHHLSSNTLDC 112 >gi|257388734|ref|YP_003178507.1| iron (metal) dependent repressor, DtxR family [Halomicrobium mukohataei DSM 12286] gi|257171041|gb|ACV48800.1| iron (metal) dependent repressor, DtxR family [Halomicrobium mukohataei DSM 12286] Length = 227 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 3 LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ + DY ++ L + S +A+A ++ +L L AG VE R + Sbjct: 2 LSAKMEDY-LKALYQLQRDEEGAVSTSSLADALDVTPPTASSMLDTLADAGFVE--REKY 58 Query: 62 GGVRLCRPADQITILDVVK 80 G L + + + +VV+ Sbjct: 59 KGAHLTPEGETVAL-EVVR 76 >gi|170720782|ref|YP_001748470.1| GntR domain-containing protein [Pseudomonas putida W619] gi|169758785|gb|ACA72101.1| GntR domain protein [Pseudomonas putida W619] Length = 236 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 IR + A P Q+AE +S + + + L G++ RG Sbjct: 17 AIRAEIDSGRLAAEARLP-TEQQLAEQLNVSRSVVREAVAQLKADGVLIARRG 68 >gi|118576521|ref|YP_876264.1| biotin-(acetyl-CoA carboxylase) ligase [Cenarchaeum symbiosum A] gi|118195042|gb|ABK77960.1| biotin-(acetyl-CoA carboxylase) ligase [Cenarchaeum symbiosum A] Length = 323 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M T R+ +RVL +A IS + ++K ++ + G VE+ G Sbjct: 1 MICTARSRGFVRVLDILKRAGGRYVSGPSMAAELGISRVAVWKHVRKIRSFGYEVES--G 58 Query: 60 RRGGVRLC 67 RR G RL Sbjct: 59 RRLGYRLA 66 >gi|221066495|ref|ZP_03542600.1| transcriptional regulator, GntR family with aminotransferase domain [Comamonas testosteroni KF-1] gi|220711518|gb|EED66886.1| transcriptional regulator, GntR family with aminotransferase domain [Comamonas testosteroni KF-1] Length = 495 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +AE+ +S + + L G+V++ RG Sbjct: 61 SVRALAESAGVSRDTVVQAYDKLAAQGLVQSRRGSG 96 >gi|15901982|ref|NP_346586.1| adc operon repressor AdcR [Streptococcus pneumoniae TIGR4] gi|111658284|ref|ZP_01408975.1| hypothetical protein SpneT_02000553 [Streptococcus pneumoniae TIGR4] gi|116516635|ref|YP_817386.1| adc operon repressor AdcR [Streptococcus pneumoniae D39] gi|148988814|ref|ZP_01820229.1| adc operon repressor AdcR [Streptococcus pneumoniae SP6-BS73] gi|148991975|ref|ZP_01821749.1| adc operon repressor AdcR [Streptococcus pneumoniae SP9-BS68] gi|149003028|ref|ZP_01827937.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS69] gi|149006850|ref|ZP_01830531.1| adc operon repressor AdcR [Streptococcus pneumoniae SP18-BS74] gi|149012038|ref|ZP_01833186.1| adc operon repressor AdcR [Streptococcus pneumoniae SP19-BS75] gi|149020086|ref|ZP_01835060.1| adc operon repressor AdcR [Streptococcus pneumoniae SP23-BS72] gi|168484001|ref|ZP_02708953.1| putative transcriptional repressor [Streptococcus pneumoniae CDC1873-00] gi|168486276|ref|ZP_02710784.1| putative transcriptional repressor [Streptococcus pneumoniae CDC1087-00] gi|168489242|ref|ZP_02713441.1| putative transcriptional repressor [Streptococcus pneumoniae SP195] gi|168494070|ref|ZP_02718213.1| putative transcriptional repressor [Streptococcus pneumoniae CDC3059-06] gi|168576045|ref|ZP_02721950.1| putative transcriptional repressor [Streptococcus pneumoniae MLV-016] gi|169833647|ref|YP_001695528.1| putative transcriptional repressor [Streptococcus pneumoniae Hungary19A-6] gi|194398300|ref|YP_002038763.1| MarR family transcriptional regulator [Streptococcus pneumoniae G54] gi|225855665|ref|YP_002737177.1| putative transcriptional repressor [Streptococcus pneumoniae JJA] gi|225861990|ref|YP_002743499.1| putative transcriptional repressor [Streptococcus pneumoniae Taiwan19F-14] gi|237649336|ref|ZP_04523588.1| adc operon repressor AdcR [Streptococcus pneumoniae CCRI 1974] gi|237821949|ref|ZP_04597794.1| adc operon repressor AdcR [Streptococcus pneumoniae CCRI 1974M2] gi|298230551|ref|ZP_06964232.1| adc operon repressor AdcR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255415|ref|ZP_06979001.1| adc operon repressor AdcR [Streptococcus pneumoniae str. Canada MDR_19A] gi|307068789|ref|YP_003877755.1| transcriptional regulator [Streptococcus pneumoniae AP200] gi|3758892|emb|CAA96184.1| AdcR protein [Streptococcus pneumoniae] gi|14973684|gb|AAK76226.1| adc operon repressor AdcR [Streptococcus pneumoniae TIGR4] gi|116077211|gb|ABJ54931.1| adc operon repressor AdcR [Streptococcus pneumoniae D39] gi|147758769|gb|EDK65765.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS69] gi|147761451|gb|EDK68416.1| adc operon repressor AdcR [Streptococcus pneumoniae SP18-BS74] gi|147763993|gb|EDK70926.1| adc operon repressor AdcR [Streptococcus pneumoniae SP19-BS75] gi|147925625|gb|EDK76701.1| adc operon repressor AdcR [Streptococcus pneumoniae SP6-BS73] gi|147929024|gb|EDK80035.1| adc operon repressor AdcR [Streptococcus pneumoniae SP9-BS68] gi|147930764|gb|EDK81745.1| adc operon repressor AdcR [Streptococcus pneumoniae SP23-BS72] gi|168996149|gb|ACA36761.1| putative transcriptional repressor [Streptococcus pneumoniae Hungary19A-6] gi|172042708|gb|EDT50754.1| putative transcriptional repressor [Streptococcus pneumoniae CDC1873-00] gi|183570699|gb|EDT91227.1| putative transcriptional repressor [Streptococcus pneumoniae CDC1087-00] gi|183572230|gb|EDT92758.1| putative transcriptional repressor [Streptococcus pneumoniae SP195] gi|183575844|gb|EDT96372.1| putative transcriptional repressor [Streptococcus pneumoniae CDC3059-06] gi|183578048|gb|EDT98576.1| putative transcriptional repressor [Streptococcus pneumoniae MLV-016] gi|194357967|gb|ACF56415.1| transcriptional regulator, MarR family [Streptococcus pneumoniae G54] gi|225722232|gb|ACO18085.1| putative transcriptional repressor [Streptococcus pneumoniae JJA] gi|225726478|gb|ACO22329.1| putative transcriptional repressor [Streptococcus pneumoniae Taiwan19F-14] gi|301795088|emb|CBW37557.1| MarR-family regulatory protein [Streptococcus pneumoniae INV104] gi|301802838|emb|CBW35616.1| MarR-family regulatory protein [Streptococcus pneumoniae INV200] gi|306410326|gb|ADM85753.1| Transcriptional regulator [Streptococcus pneumoniae AP200] gi|327388911|gb|EGE87259.1| iron dependent repressor, N-terminal DNA binding domain protein [Streptococcus pneumoniae GA04375] gi|332071249|gb|EGI81744.1| iron dependent repressor, N-terminal DNA binding domain protein [Streptococcus pneumoniae GA17545] gi|332071442|gb|EGI81936.1| iron dependent repressor, N-terminal DNA binding domain protein [Streptococcus pneumoniae GA41301] gi|332071609|gb|EGI82102.1| iron dependent repressor, N-terminal DNA binding domain protein [Streptococcus pneumoniae GA17570] gi|332198592|gb|EGJ12675.1| iron dependent repressor, N-terminal DNA binding domain protein [Streptococcus pneumoniae GA41317] gi|332198789|gb|EGJ12871.1| iron dependent repressor, N-terminal DNA binding domain protein [Streptococcus pneumoniae GA47368] gi|332198991|gb|EGJ13072.1| iron dependent repressor, N-terminal DNA binding domain protein [Streptococcus pneumoniae GA47901] Length = 146 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S++A +S+ + K ++ LVK G++ET + Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 >gi|323358535|ref|YP_004224931.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274906|dbj|BAJ75051.1| transcriptional regulator [Microbacterium testaceum StLB037] Length = 366 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R + A+H+D RISQ+ E ++ + L + L L K G++ R GG Sbjct: 15 RAHILSALHSDGAVRISQLTEDLGVATVTLRRDLAQLEKEGVL---RRVHGG 63 >gi|299771802|ref|YP_003733828.1| Pca operon regulatory protein [Acinetobacter sp. DR1] gi|298701890|gb|ADI92455.1| Pca operon regulatory protein [Acinetobacter sp. DR1] Length = 257 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ I ++ + + I E +S+ ++ L+ LV +++ + G Sbjct: 1 MAISSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSTDLLKRINGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I +LD + + T+ ++ F + ++ C L + L Sbjct: 59 SGDYTLG---SKIAVLDYISRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107 >gi|266620990|ref|ZP_06113925.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM 13479] gi|288867371|gb|EFC99669.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM 13479] Length = 123 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ + ++A ++ + K L L ++GI+ + R Sbjct: 21 LRIISGIYAAGSRLPSVRELAGEASVNPNTMQKALSELEQSGIIYSQR 68 >gi|261250811|ref|ZP_05943385.1| melibiose operon regulatory protein [Vibrio orientalis CIP 102891] gi|260937684|gb|EEX93672.1| melibiose operon regulatory protein [Vibrio orientalis CIP 102891] Length = 338 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +L Y A H++ P IAE + + + Q Sbjct: 204 MLEYIATHHNMPLTTKAIAEHVGLHANYAMNVFQR 238 >gi|271502289|ref|YP_003335315.1| AraC family transcriptional regulator [Dickeya dadantii Ech586] gi|270345844|gb|ACZ78609.1| transcriptional regulator, AraC family [Dickeya dadantii Ech586] Length = 401 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 I+ L+Y H + ++AE IS L +L+ Sbjct: 291 IKALLYLGEHFQREVTLIELAENSHISPSHLSYLLK 326 >gi|256389258|ref|YP_003110822.1| HxlR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355484|gb|ACU68981.1| transcriptional regulator, HxlR family [Catenulispora acidiphila DSM 44928] Length = 153 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 8/85 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGI----VETVRGRRGGVRLC 67 L+ A+ + P R +++ +SE L + LQ L + G V++ + +L Sbjct: 50 ALIMMALR-EGPVRFNELRRRVDGVSEKMLSQGLQALERDGFVAREVQSTMPPKVEYQLT 108 Query: 68 RPADQIT--ILDVVKATEESFFVAE 90 Q + + D+V+ E E Sbjct: 109 PLGTQTSDRLADLVEFLEGRMPEVE 133 >gi|297566057|ref|YP_003685029.1| GntR family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850506|gb|ADH63521.1| transcriptional regulator, GntR family [Meiothermus silvanus DSM 9946] Length = 231 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 13 VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 VL A +P +Q+++ +S + + LQ L + G + +G+ Sbjct: 10 VLRELAKPQPGFPLSENQLSQRFGVSRMTARRALQELEREGYLSRQQGKG 59 >gi|168211512|ref|ZP_02637137.1| transcription regulator [Clostridium perfringens B str. ATCC 3626] gi|182625025|ref|ZP_02952803.1| transcription regulator [Clostridium perfringens D str. JGS1721] gi|170710518|gb|EDT22700.1| transcription regulator [Clostridium perfringens B str. ATCC 3626] gi|177909822|gb|EDT72240.1| transcription regulator [Clostridium perfringens D str. JGS1721] Length = 318 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +LM +H + +A+ +S +++ ++ L GI + T RG GG++L Sbjct: 9 ILMLLQVHKQ--LTANDLAKRLEVSVRTIYRDIESLSSLGIPIFTERGTNGGIKL 61 >gi|28871684|ref|NP_794303.1| GntR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213966709|ref|ZP_03394860.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] gi|28854936|gb|AAO57998.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213928559|gb|EEB62103.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] Length = 249 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|116623075|ref|YP_825231.1| GntR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226237|gb|ABJ84946.1| transcriptional regulator, GntR family [Candidatus Solibacter usitatus Ellin6076] Length = 242 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 12/80 (15%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGV 64 R L D S I + +S + + + L AG VET G G Sbjct: 30 RAL----KPGDKLPTESAIMQNFGVSRTVVREAISALQAAGFVETRHGIGTFVLDSPSGF 85 Query: 65 RLCRPADQI-TILDVVKATE 83 I T+ D++ E Sbjct: 86 EFRVEPRSIPTVRDILAMLE 105 >gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 15/76 (19%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGI 53 LT + +Y + L + + + I E I E+++ + + L AG+ Sbjct: 150 LTAK-EYAV--LEHLVLRAGQVVSKADILEHVWDFAYSGDPNIVEVYVSTLRRKLG-AGL 205 Query: 54 VETVRGRRGGVRLCRP 69 + TVRG G L RP Sbjct: 206 IRTVRGA--GYLLERP 219 >gi|329847066|ref|ZP_08262094.1| ROK family protein [Asticcacaulis biprosthecum C19] gi|328842129|gb|EGF91698.1| ROK family protein [Asticcacaulis biprosthecum C19] Length = 377 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRR 61 + DY RV++ AI P S++A A ++ + I + L++ GIV+ + G R Sbjct: 3 RAGDYNQRVILQ-AIRAGGPVTRSELAGATGLTHQSVINITRRLMEDGIVQDEGAIIGGR 61 Query: 62 G--GVRLCRPAD 71 G RL D Sbjct: 62 GQPAARLAVNPD 73 >gi|312141538|ref|YP_004008874.1| gntr family transcriptional regulator [Rhodococcus equi 103S] gi|311890877|emb|CBH50196.1| putative GntR family transcriptional regulator [Rhodococcus equi 103S] Length = 272 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 24/136 (17%) Query: 12 RVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG------- 63 R+L A D + +++ E ++ L + L+ L G+V RG RGG Sbjct: 34 RILRGDLA-EGDVLPKEAELREQYPVNVQSLREALRILEAEGLVRVRRGNRGGAVVHRPT 92 Query: 64 ---------VRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR 112 + L I DV +A E A C +V L ++ Sbjct: 93 PGNVAYSLSMVLAMSGTDID--DVGRALHEIEPMCAALCAEREDRATEVVP--ILRTLHE 148 Query: 113 KALNAFFDVLTQYSIE 128 ++L D++ ++ Sbjct: 149 ESLANVDDLVAATTLS 164 >gi|271965797|ref|YP_003339993.1| MarR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508972|gb|ACZ87250.1| transcriptional regulator, MarR family [Streptosporangium roseum DSM 43021] Length = 162 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ A + P I ++A++ S + + + + K +V + G Sbjct: 47 LIRLA--HTGPLTIRELAKSLNRSHSAISQTIAAMRKEDLVTSEPGP 91 >gi|269125029|ref|YP_003298399.1| GntR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|269128713|ref|YP_003302083.1| GntR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309987|gb|ACY96361.1| transcriptional regulator, GntR family [Thermomonospora curvata DSM 43183] gi|268313671|gb|ACZ00046.1| transcriptional regulator, GntR family [Thermomonospora curvata DSM 43183] Length = 272 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILDVV 79 D S++A +S + L L K+G V+T R R G L R IT+ D Sbjct: 27 GDRLPTESELAARWKVSTSTVKDALSELRKSGRVQT-RPREGTFVLPRRRPLTITLND-- 83 Query: 80 KATEESFFVAE 90 + + AE Sbjct: 84 RELDMPQVPAE 94 >gi|269102069|ref|ZP_06154766.1| putative ARAC-type regulatory protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268161967|gb|EEZ40463.1| putative ARAC-type regulatory protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 290 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVRGRRGGVRLCRP 69 + +Y + P IA +S L +I + + A + VR R L + Sbjct: 185 ICIYIQENFHRPITRETIANRFNVSPNHLSRIFRQQGHMRLADYISWVRIERAKFMLKKY 244 Query: 70 A 70 Sbjct: 245 P 245 >gi|257413363|ref|ZP_05591622.1| transcriptional regulator, MarR family [Roseburia intestinalis L1-82] gi|257203810|gb|EEV02095.1| transcriptional regulator, MarR family [Roseburia intestinalis L1-82] Length = 148 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 9 YGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 YG+R + +Y H + + E +S+ + K + L + G +E Sbjct: 30 YGLRHVELDILYLISHEKQKDTAKDLIEIQHLSKAHISKSVDNLKQHGYIE 80 >gi|256042844|ref|ZP_05445790.1| Rrf2 family transcriptional regulator protein [Brucella melitensis bv. 1 str. Rev.1] Length = 42 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%) Query: 98 DCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129 DC C + V+ A +VL ++ Sbjct: 1 DC-NEAECQVRHVMLDVREAIANVLDHRTLAD 31 >gi|239980624|ref|ZP_04703148.1| GntR family transcriptional regulator [Streptomyces albus J1074] gi|291452481|ref|ZP_06591871.1| GntR-family transcriptional regulator [Streptomyces albus J1074] gi|291355430|gb|EFE82332.1| GntR-family transcriptional regulator [Streptomyces albus J1074] Length = 139 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + +T +R L + D ++ E I+ + K + L + G+VE GR Sbjct: 16 MQIVLQTKQALR-LGVL-VPGDKLPTAKEVVETAAINPHTVLKAYRELEREGLVELQPGR 73 Query: 61 R 61 Sbjct: 74 G 74 >gi|156935946|ref|YP_001439862.1| DNA-binding transcriptional repressor LldR [Cronobacter sakazakii ATCC BAA-894] gi|156534200|gb|ABU79026.1| hypothetical protein ESA_03840 [Cronobacter sakazakii ATCC BAA-894] Length = 262 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 11 IRVLM-YCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 IR L+ + Q+A+ +S L + LQ L++ G++ + RG Sbjct: 16 IRALITERGLEAGMRLPSERQLAQELGVSRNSLREALQILIRDGLLISRRGGG 68 >gi|121604496|ref|YP_981825.1| GntR domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593465|gb|ABM36904.1| transcriptional regulator, GntR family [Polaromonas naphthalenivorans CJ2] Length = 273 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 12/73 (16%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71 D ++I +S + + L L +G+V+T G G ++ AD Sbjct: 51 GDKMPTEAEIMARFDVSRTVVRESLSKLQASGLVKTRHGIGTFVLSPQEAGNFKIA--AD 108 Query: 72 Q-ITILDVVKATE 83 TI DV+ E Sbjct: 109 DFATIADVISVLE 121 >gi|330888721|gb|EGH21382.1| GntR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 223 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 73 ATIVTLRDVLAILE 86 >gi|291442709|ref|ZP_06582099.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291345604|gb|EFE72560.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 110 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 RVL+ A +R+ +A+A I+E + I+ L AG + R Sbjct: 19 RVLIALARDPG--SRLRDVADAIDITERAVQLIVADLEAAGYLTRTR 63 >gi|251768321|ref|ZP_04820500.1| transcriptional regulator, IclR family [Burkholderia mallei PRL-20] gi|243060191|gb|EES42377.1| transcriptional regulator, IclR family [Burkholderia mallei PRL-20] Length = 180 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A +D P ++AE I + + +I LV G + Sbjct: 21 ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSTGFL 70 >gi|268316788|ref|YP_003290507.1| transcriptional regulator, GntR family [Rhodothermus marinus DSM 4252] gi|262334322|gb|ACY48119.1| transcriptional regulator, GntR family [Rhodothermus marinus DSM 4252] Length = 305 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++A IS + K Q L G++ + GRR L RP Sbjct: 37 STRELARQLGISFHTVRKAYQQLEAEGLIHSQSGRR---YLVRP 77 >gi|284034456|ref|YP_003384387.1| GntR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813749|gb|ADB35588.1| transcriptional regulator, GntR family [Kribbella flavida DSM 17836] Length = 305 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + QIA+ ++ K++ L G+VET G Sbjct: 22 RPGDRVPSVRQIAQNEGVAISTATKVIARLRDDGLVETTVGSG 64 >gi|237730435|ref|ZP_04560916.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226905974|gb|EEH91892.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 475 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A+ + P ++A +S + + L + G +E+ G Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAVVLQVSRTTVASAMAQLREEGYLESRHGSG 87 >gi|206578925|ref|YP_002240059.1| transcriptional regulator, GntR family/aminotransferase family protein [Klebsiella pneumoniae 342] gi|206567983|gb|ACI09759.1| transcriptional regulator, GntR family/aminotransferase family protein [Klebsiella pneumoniae 342] Length = 475 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+L+ + P ++A A +S + L L + G + + +G + L Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92 Query: 67 CRPADQ 72 Sbjct: 93 PERPAD 98 >gi|115265521|dbj|BAF32783.1| transcriptional regulator of GntR family [Pseudomonas syringae pv. actinidiae] Length = 249 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|134296313|ref|YP_001120048.1| IclR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139470|gb|ABO55213.1| transcriptional regulator, IclR family [Burkholderia vietnamiensis G4] Length = 269 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|330994447|ref|ZP_08318372.1| Biofilm growth-associated repressor [Gluconacetobacter sp. SXCC-1] gi|329758447|gb|EGG74966.1| Biofilm growth-associated repressor [Gluconacetobacter sp. SXCC-1] Length = 134 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM A D + +I I + L + L L +A IV T + Sbjct: 27 LMVLACLLDGEKSVGEIEARTGIGQPTLSQQLAELRRAEIVVTRK 71 >gi|330465866|ref|YP_004403609.1| regulatory protein arsr [Verrucosispora maris AB-18-032] gi|328808837|gb|AEB43009.1| regulatory protein arsr [Verrucosispora maris AB-18-032] Length = 326 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 7/58 (12%) Query: 10 GIRVLM------YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + L+ A +D ++A IS + + L AG++ + R R Sbjct: 254 ALAALLGRTRAAVLAASDDG-CSTGELARRLYISPAAVSQHTTVLRNAGLLASHRDRN 310 >gi|318057232|ref|ZP_07975955.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actG] Length = 410 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A+ ++ + + + L + G + TV+G GG RL Sbjct: 26 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 63 >gi|307243819|ref|ZP_07525950.1| transcriptional regulator, DeoR family [Peptostreptococcus stomatis DSM 17678] gi|306492822|gb|EFM64844.1| transcriptional regulator, DeoR family [Peptostreptococcus stomatis DSM 17678] Length = 299 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y +++A+ +S +++ + + AGI + +G+ GG+ + + Sbjct: 8 FRILYYI--LEKEKVTANELADKFEVSVRTIYRDIDSISSAGIPIYATQGKGGGIEIAKD 65 >gi|296535434|ref|ZP_06897627.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296264231|gb|EFH10663.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 119 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 30/111 (27%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R ++A + L L +AG+V + R R Sbjct: 19 LRAFRLLIRQGPEGLPAGEVARRLGAPHNTISTHLAILTRAGLVASRRESR--------- 69 Query: 71 DQITILDVVKATEE-------SFFVAECFASHKIDC--------PLVGSCG 106 V+ A E F V EC C PL C Sbjct: 70 ------QVIYAVEAGGARALIGFLVEECCGGRPEACAPLIEAALPLAACCP 114 >gi|289626657|ref|ZP_06459611.1| transcriptional regulator GntR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649479|ref|ZP_06480822.1| transcriptional regulator GntR [Pseudomonas syringae pv. aesculi str. 2250] gi|330869617|gb|EGH04326.1| transcriptional regulator GntR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987510|gb|EGH85613.1| transcriptional regulator GntR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011429|gb|EGH91485.1| transcriptional regulator GntR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 73 ATIVTLRDVLAILE 86 >gi|289641762|ref|ZP_06473920.1| GntR domain protein [Frankia symbiont of Datisca glomerata] gi|289508406|gb|EFD29347.1| GntR domain protein [Frankia symbiont of Datisca glomerata] Length = 231 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +++ +S + + L L + ++ G GGV + P Q+ + V Sbjct: 38 TELISRFEVSPSVMNEALGILRERDLITVRPGPNGGVFVANPPPQVRLGGV 88 >gi|284042362|ref|YP_003392702.1| ArsR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946583|gb|ADB49327.1| transcriptional regulator, ArsR family [Conexibacter woesei DSM 14684] Length = 141 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 L D + ++AE +S+ + L+ L + +V R GR RL Sbjct: 52 LRLLWALLDGELTVEELAERTELSQSAVSHQLRLLRQGRLVSVRRSGRHAHYRL 105 >gi|257790419|ref|YP_003181025.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|257474316|gb|ACV54636.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] Length = 128 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + K+ Q L G++ + RG+R Sbjct: 33 RPGDTLPTVRELAIQLGVNYNTIHKVYQDLETDGLILSGRGKR 75 >gi|302528243|ref|ZP_07280585.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437138|gb|EFL08954.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 276 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P ++++A + +ILQ LV+ G VE Sbjct: 24 GERPLTLAELARRSHVPRSSAHRILQRLVELGWVE 58 >gi|238897128|ref|YP_002921874.1| hypothetical protein KP1_5387 [Klebsiella pneumoniae NTUH-K2044] gi|238549456|dbj|BAH65807.1| hypothetical protein KP1_5387 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 232 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 11 IRVLM-YCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +R L+ A + + R +S I +S + IL L K G + RG Sbjct: 166 VRTLLTELADYPEAYRRQINVLSFIQRRTNLSRSRIMSILSELRKGGYITVHRGV 220 >gi|258405048|ref|YP_003197790.1| regulatory protein GntR HTH [Desulfohalobium retbaense DSM 5692] gi|257797275|gb|ACV68212.1| regulatory protein GntR HTH [Desulfohalobium retbaense DSM 5692] Length = 254 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 13 VLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ + ++ + IS L L+ L G+V+T RG Sbjct: 26 IVLDLGLEPGDRLPAERRLCQLMHISRTTLRNFLRMLEGRGLVQTKRGSG 75 >gi|289579989|ref|YP_003478455.1| iron (metal) dependent repressor, DtxR family [Natrialba magadii ATCC 43099] gi|289529542|gb|ADD03893.1| iron (metal) dependent repressor, DtxR family [Natrialba magadii ATCC 43099] Length = 225 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY ++ + +D + S+IAEA ++ + +L+ L G+V+ R + GV L Sbjct: 8 DY-LKAIYQLQRDHDERVKTSEIAEALDVTSPTVTSMLEKLGDRGLVD--REKYRGVTLT 64 Query: 68 RPADQITILDVVK 80 + + + +VV+ Sbjct: 65 DEGETVAL-EVVR 76 >gi|111018059|ref|YP_701031.1| GntR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110817589|gb|ABG92873.1| transcriptional regulator, GntR family protein [Rhodococcus jostii RHA1] Length = 247 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 A D ++AEA +S + + +Q L +AG+VE +G Sbjct: 29 DLAA-GDALPSERRLAEAFGVSRPAIREAIQKLAQAGLVEVRQG 71 >gi|92109554|ref|YP_571841.1| ArsR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802636|gb|ABE65009.1| transcriptional regulator, ArsR family [Nitrobacter hamburgensis X14] Length = 155 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 15/42 (35%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H IAE L L LV+AG++ + R Sbjct: 45 LVKHEPVGITAGVIAETVGAPHNTLSTHLAILVRAGLLRSSR 86 >gi|91772993|ref|YP_565685.1| hypothetical protein Mbur_0996 [Methanococcoides burtonii DSM 6242] gi|91712008|gb|ABE51935.1| Hypothetical protein Mbur_0996 [Methanococcoides burtonii DSM 6242] Length = 160 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IS++AE IS L K++Q + G++ + + Sbjct: 29 NISELAEEVNISRPTLTKVVQMFSEWGLLLSSK 61 >gi|94313149|ref|YP_586358.1| IclR family transcriptional regulator family [Cupriavidus metallidurans CH34] gi|93357001|gb|ABF11089.1| transcriptional regulator, IclR family [Cupriavidus metallidurans CH34] Length = 266 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 11 IRVLMYC-AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +R L A + P +Q+AE + + ++ LV+ G +E G G RL Sbjct: 22 LRGLNLLRAFVSGAPVLSNAQLAERSGLPRPTVSRLTHSLVEGGYLE-YDGVSKGYRLA 79 >gi|329893889|ref|ZP_08269940.1| transcriptional regulator, AsnC family protein [gamma proteobacterium IMCC3088] gi|328923408|gb|EGG30724.1| transcriptional regulator, AsnC family protein [gamma proteobacterium IMCC3088] Length = 158 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M +TD +++L ND ++IAE +S+ ++ +Q L AG E Sbjct: 1 MQELTKTD--LKILELL--QNDSTISTAEIAEHIGLSQSPCWRRIQRLEHAGFFEER--- 53 Query: 61 RGGVRLCRP 69 G+RL R Sbjct: 54 --GIRLNRD 60 >gi|324998000|ref|ZP_08119112.1| oxidoreductase [Pseudonocardia sp. P1] Length = 253 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + D I +L A+ + ++A A + + F++L L + G+VE + G RG Sbjct: 13 QSVDRAITLLELMALRGEAGVS--ELAAALDVHKSTAFRLLGALEEHGLVEQI-GDRGKY 69 Query: 65 RLC 67 RL Sbjct: 70 RLG 72 >gi|312966875|ref|ZP_07781093.1| hypothetical protein EC236275_2694 [Escherichia coli 2362-75] gi|312288339|gb|EFR16241.1| hypothetical protein EC236275_2694 [Escherichia coli 2362-75] gi|323169305|gb|EFZ54981.1| hypothetical protein SS53G_0475 [Shigella sonnei 53G] gi|323170041|gb|EFZ55697.1| hypothetical protein ECLT68_5685 [Escherichia coli LT-68] Length = 81 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +L Y A + +IA A + L+ L ++G+V + GG Sbjct: 1 MTILDYIAANPG--CSSGEIAAALNTPTTTINAELRRLWRSGLVTRKERKTGG 51 >gi|289675955|ref|ZP_06496845.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae FF5] Length = 230 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|282165035|ref|YP_003357420.1| hypothetical protein MCP_2365 [Methanocella paludicola SANAE] gi|282157349|dbj|BAI62437.1| hypothetical protein [Methanocella paludicola SANAE] Length = 352 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPA 70 R++ Y + S + S+ L +L L + G I++ +G+ +RL RP Sbjct: 288 RIVRYLEEAGGQMFQ-SDLVRKTDFSKSKLSMVLSDLKEKGTIIKIKKGKENLIRLNRPP 346 Query: 71 DQ 72 + Sbjct: 347 AE 348 >gi|269959308|ref|ZP_06173692.1| hypothetical protein VME_00760 [Vibrio harveyi 1DA3] gi|269836010|gb|EEZ90085.1| hypothetical protein VME_00760 [Vibrio harveyi 1DA3] Length = 240 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE IS + K L L GIV++ G Sbjct: 30 RELAEKYDISRFSVRKALSKLEAIGIVKSKVGSG 63 >gi|255657094|ref|ZP_05402503.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296452073|ref|ZP_06893784.1| DeoR family transcriptional regulator [Clostridium difficile NAP08] gi|296879533|ref|ZP_06903515.1| DeoR family transcriptional regulator [Clostridium difficile NAP07] gi|296259023|gb|EFH05907.1| DeoR family transcriptional regulator [Clostridium difficile NAP08] gi|296429471|gb|EFH15336.1| DeoR family transcriptional regulator [Clostridium difficile NAP07] Length = 320 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +D +IAE I+ +++ + L +G+ + + G GG L Sbjct: 14 LSSDKKITAKEIAEKLEINIRTVYRYIDVLSASGVPIISDIGHNGGYSL 62 >gi|222084753|ref|YP_002543282.1| sugar transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722201|gb|ACM25357.1| sugar transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 415 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62 R+++ + ++ + IA +S + I++ L K G++ E VRGR G Sbjct: 34 RLVLSLVRRHGALSK-ADIARRSGLSAQTVSVIMRALEKDGLLSRGEPVRGRVG 86 >gi|66047455|ref|YP_237296.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae B728a] gi|63258162|gb|AAY39258.1| regulatory protein, GntR:Bacterial regulatory protein, GntR [Pseudomonas syringae pv. syringae B728a] gi|330969583|gb|EGH69649.1| transcriptional regulator GntR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 249 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|78047893|ref|YP_364068.1| ArsR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|121593768|ref|YP_985664.1| ArsR family transcriptional regulator [Acidovorax sp. JS42] gi|78036323|emb|CAJ24014.1| transcriptional regulator, ArsR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|120605848|gb|ABM41588.1| transcriptional regulator, ArsR family [Acidovorax sp. JS42] Length = 117 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L++C P+ + IAE+ +S+ + L+ L A +V+ VR Sbjct: 41 LRILLFC---MKGPSAVGDIAESLELSQSLVSHHLRLLRGARLVKGVR 85 >gi|50083397|ref|YP_044907.1| DNA-binding transcriptional repressor LldR [Acinetobacter sp. ADP1] gi|49529373|emb|CAG67085.1| transcriptional repressor for L-lactate utilization (GntR family) [Acinetobacter sp. ADP1] Length = 250 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 D Q+A + IS L + +Q L GI+ + RG Sbjct: 22 QGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61 >gi|182437449|ref|YP_001825168.1| IclR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|7341298|gb|AAF61237.1| sporulation protein SsfR [Streptomyces griseus] gi|28201177|dbj|BAC56595.1| putative transcriptional regulator [Streptomyces griseus] gi|178465965|dbj|BAG20485.1| putative IclR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 326 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +R+L H D Q+A + + +L+ L G + R G L Sbjct: 87 ALRLLEAVGAHRDG-APAKQLAREAGLPLPTAYHLLRTLTHEGYL---RRENGVFLLGAA 142 Query: 70 ADQITIL 76 A+ +T+ Sbjct: 143 AENLTVA 149 >gi|325478982|gb|EGC82084.1| transcriptional regulator, GntR family [Anaerococcus prevotii ACS-065-V-Col13] Length = 123 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +A+ ++ + + LQ L + G+ E+ R Sbjct: 29 GGKILPVRDLAKTYEVNPNTVQRALQELEREGLCESRR 66 >gi|315283549|ref|ZP_07871713.1| helix-turn-helix type 11 domain-containing protein [Listeria marthii FSL S4-120] gi|313612810|gb|EFR86788.1| helix-turn-helix type 11 domain-containing protein [Listeria marthii FSL S4-120] Length = 298 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 R+L + + S++AE +S +++ ++ L+ AG V ++ G+ GG Sbjct: 5 RILAILVMILERKVLASELAEKFEVSTRTIYRDMETLLYAGFPVVSLPGKNGGF 58 >gi|313142758|ref|ZP_07804951.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131789|gb|EFR49406.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 124 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 QIA+ S L ++L+ + G+++T +G+ Sbjct: 86 RQIAQKLNTSPESLSRVLREFKEEGLIKTQKGK 118 >gi|302517900|ref|ZP_07270242.1| LOW QUALITY PROTEIN: PdxR [Streptomyces sp. SPB78] gi|302426795|gb|EFK98610.1| LOW QUALITY PROTEIN: PdxR [Streptomyces sp. SPB78] Length = 512 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 10 GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 GIRVL+ + P ++A A +S + + L +AG +E+ RG Sbjct: 85 GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 138 >gi|229494944|ref|ZP_04388695.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229318168|gb|EEN84038.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 322 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +++A+ I+ + + + L G V+ G GG RL A+ Sbjct: 22 SGAELADKLAITPRTVRRDVDRLRDLGYPVDATVGVGGGYRLGAGAE 68 >gi|217967027|ref|YP_002352533.1| GntR family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336126|gb|ACK41919.1| transcriptional regulator, GntR family [Dictyoglomus turgidum DSM 6724] Length = 121 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++AE ++ + K Q L + GI T+RG Sbjct: 30 GDKLPSVRELAEMLKVNPNTVQKAYQELEREGITYTLRGIG 70 >gi|104781524|ref|YP_608022.1| LexA repressor [Pseudomonas entomophila L48] gi|95110511|emb|CAK15219.1| putative LexA repressor 2 [Pseudomonas entomophila L48] Length = 202 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 23 YPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 P ++ IAE S K + L +AG ++ + G+RL P Sbjct: 24 QPPSLADIAERFGFASRSVARKHITALCQAGYIDVTPNQARGIRLAEP 71 >gi|39945744|ref|XP_362409.1| hypothetical protein MGG_07992 [Magnaporthe oryzae 70-15] gi|145019225|gb|EDK03453.1| hypothetical protein MGG_07992 [Magnaporthe oryzae 70-15] Length = 438 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 18/39 (46%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 A + D P ++ +A + L ++++ + G +E Sbjct: 117 MARNGDGPQAVADLAAVLGVDPPLLARVMRHVAAMGYLE 155 >gi|50954561|ref|YP_061849.1| hypothetical protein Lxx08452 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951043|gb|AAT88744.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 112 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR 61 L+ T G+ L+ + P S +AEA +S + L L G+VE + GRR Sbjct: 21 LSDTTRVGV--LLTL---REAPAFPSDLAEALGVSRQVMSNQLACLRGCGLVEAIPEGRR 75 Query: 62 GGVRLCRPADQIT--ILDVVKATEESFFVAECFASHKIDC 99 RL I+ + ++++ T F C A + C Sbjct: 76 TWYRLAD--SHISPALDELLRVT--LFIEPGCCAGEECHC 111 >gi|318075230|ref|ZP_07982562.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 413 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A+ ++ + + + L + G + TV+G GG RL Sbjct: 29 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 66 >gi|313904167|ref|ZP_07837546.1| Helix-turn-helix type 11 domain protein [Eubacterium cellulosolvens 6] gi|313470969|gb|EFR66292.1| Helix-turn-helix type 11 domain protein [Eubacterium cellulosolvens 6] Length = 255 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + P ++A+ +S ++K +Q L + I GR+G L P D Sbjct: 9 DLTLLGGQPVSGQELADRYHVSRNAIWKAIQSLKENNIPIITVGRKG-YAL--PPD 61 >gi|307946677|ref|ZP_07662012.1| ArsR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307770341|gb|EFO29567.1| ArsR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 129 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+L+ C + D + +AE + + + L L G+V T R G RL Sbjct: 38 RLLLMCHMSEDE-CSVGDLAEKTGMRLPTVSQQLSLLRSQGLVATRRDGTTIYYRLASDP 96 Query: 71 -DQI 73 +I Sbjct: 97 TREI 100 >gi|226306921|ref|YP_002766881.1| ArsR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186038|dbj|BAH34142.1| putative ArsR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 140 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D ++++AE + + L L A +V T R Sbjct: 41 DRECSVNELAERVGKPAPSVSQHLAKLRMARLVRTRR 77 >gi|225375156|ref|ZP_03752377.1| hypothetical protein ROSEINA2194_00780 [Roseburia inulinivorans DSM 16841] gi|225213030|gb|EEG95384.1| hypothetical protein ROSEINA2194_00780 [Roseburia inulinivorans DSM 16841] Length = 325 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +L D ++ E +S ++K + L +AG +E V+ + G RL Sbjct: 5 ILTLL-RETDGYVSGQELCEKFGVSRTAVWKAINQLKEAGYEIEAVQNK--GYRL----- 56 Query: 72 QITILDVVKATE 83 +++ D++ +E Sbjct: 57 -VSVPDILSESE 67 >gi|152991587|ref|YP_001357309.1| hypothetical protein NIS_1848 [Nitratiruptor sp. SB155-2] gi|151423448|dbj|BAF70952.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 57 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 21/37 (56%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + D P + +IAEA + + + K+++ L G +++ Sbjct: 11 NADRPMKSGEIAEALGVDKKEVDKVIKRLKNEGKIDS 47 >gi|148271726|ref|YP_001221287.1| ArsR family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829656|emb|CAN00572.1| transcriptional regulator, ArsR family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 182 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 11 IRVLMYCAIHNDYP---NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVR 65 +RVL+ + P +S++ + IS+ + K L+ L +G+V +VR G+ R Sbjct: 17 LRVLLDRRAVPEAPTGEISVSELVQTLGISQPTVSKHLRVLRDSGLV-SVREEGQHRYYR 75 Query: 66 LCRPADQ 72 L + Sbjct: 76 LEPAPLE 82 >gi|99082535|ref|YP_614689.1| AraC family transcriptional regulator [Ruegeria sp. TM1040] gi|99038815|gb|ABF65427.1| transcriptional regulator, AraC family [Ruegeria sp. TM1040] Length = 336 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45 +R + +YP +++AE IS L ++ Sbjct: 228 VRAMAIMEECIEYPLSTAEVAERAGISVRHLERLF 262 >gi|322806430|emb|CBZ03999.1| transcriptional regulator, GntR family domain / Aspartate aminotransferase [Clostridium botulinum H04402 065] Length = 497 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73 >gi|298249483|ref|ZP_06973287.1| transcriptional regulator, GntR family [Ktedonobacter racemifer DSM 44963] gi|297547487|gb|EFH81354.1| transcriptional regulator, GntR family [Ktedonobacter racemifer DSM 44963] Length = 129 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M L ++ +R + D + ++ I+ +FK + L + G+VE+ G Sbjct: 16 MQLVQQVKRALR--LGLLQPGDQLPTVREVVTMIAINPNTVFKAYRELERDGLVESRPG 72 >gi|291520864|emb|CBK79157.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Coprococcus catus GD/7] Length = 325 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPADQITILD 77 + ++ + +S ++K++ L + G V + V+ + G RL + D +T + Sbjct: 10 REAEDYVSGQELCQMFDVSRTAIWKVMNQLKEEGYVIDAVKNK--GYRLVQTPDLVTAEE 67 Query: 78 VVKATEESFF 87 V E S+ Sbjct: 68 VESLLETSWA 77 >gi|284920255|emb|CBG33314.1| putative substrate-binding protein [Escherichia coli 042] Length = 566 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPAD 71 +S++AE C SE + +L+ +AG +E + RG+RG +R + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPE 74 >gi|226949451|ref|YP_002804542.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum A2 str. Kyoto] gi|226841135|gb|ACO83801.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum A2 str. Kyoto] Length = 497 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73 >gi|215489670|ref|YP_002332101.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|215267742|emb|CAS12204.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] Length = 301 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|170756249|ref|YP_001781789.1| GntR family transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169121461|gb|ACA45297.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum B1 str. Okra] Length = 497 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73 >gi|168183846|ref|ZP_02618510.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum Bf] gi|237795605|ref|YP_002863157.1| GntR family transcriptional regulator/class I/II aminotransferase [Clostridium botulinum Ba4 str. 657] gi|182673102|gb|EDT85063.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum Bf] gi|229262618|gb|ACQ53651.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum Ba4 str. 657] Length = 497 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73 >gi|168179863|ref|ZP_02614527.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum NCTC 2916] gi|182669440|gb|EDT81416.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Clostridium botulinum NCTC 2916] Length = 497 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73 >gi|167770678|ref|ZP_02442731.1| hypothetical protein ANACOL_02024 [Anaerotruncus colihominis DSM 17241] gi|167667273|gb|EDS11403.1| hypothetical protein ANACOL_02024 [Anaerotruncus colihominis DSM 17241] Length = 149 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 2 HLTKRT-DYGIRVLMYC-------AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 + ++ DYG VL++ AI N + I++IA S+ + K+ + L K G Sbjct: 21 KINQKAHDYGCGVLLHMSDIHMIEAIGNYPDSNITEIAGHLGFSKGTVSKLTKKLEKGGF 80 Query: 54 VE 55 + Sbjct: 81 IR 82 >gi|111017340|ref|YP_700312.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110816870|gb|ABG92154.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 245 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 G+RVL A+ P + +++ + + + + LQ L AG + + Sbjct: 7 GLRVLE--AVAESQPVGVGELSRTLQLPKSTVQRTLQALASAGWIRS 51 >gi|120403279|ref|YP_953108.1| UbiC transcription regulator-associated domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956097|gb|ABM13102.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii PYR-1] Length = 263 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 I D +IA + +S + L + L + G+++ RGR GG Sbjct: 43 IPGDKLPPEVEIATSLGVSRMTLRQALSAVEAKGLIDRRRGRFGG 87 >gi|150018358|ref|YP_001310612.1| DeoR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904823|gb|ABR35656.1| transcriptional regulator, DeoR family [Clostridium beijerinckii NCIMB 8052] Length = 253 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 ++ ++ +++E +SE + K LQ L K G ++ GG L R +++ Sbjct: 14 LNKHGRVKVKELSEQFNVSEGMIRKDLQRLEKNGDLQRT---YGGAILNRKISKLS 66 >gi|113968527|ref|YP_732320.1| biotin--protein ligase [Shewanella sp. MR-4] gi|113883211|gb|ABI37263.1| biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. MR-4] Length = 319 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 + ++Y ++A IS + K + L G+ + +V+GR G +L P I Sbjct: 15 LSSEYFVSGEELATQLGISRAAVSKHVDALEDYGVAIYSVKGR--GYKLANPISLIDSAR 72 Query: 78 VVKATEESFFVAECFASHKID 98 ++++ + CF +I Sbjct: 73 LIQSID-----NRCFYFDEIP 88 >gi|91974843|ref|YP_567502.1| regulatory protein, ArsR [Rhodopseudomonas palustris BisB5] gi|91681299|gb|ABE37601.1| transcriptional regulator, ArsR family [Rhodopseudomonas palustris BisB5] Length = 111 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C + + +A++ IS+ L + L L GIV R Sbjct: 31 RLMILCRLIETGEMTVGALADSIGISQSALSQHLARLRDDGIVTYRR 77 >gi|319893237|ref|YP_004150112.1| transcriptional regulator, putative pyruvate dehydrogenase complex repressor [Staphylococcus pseudintermedius HKU10-03] gi|317162933|gb|ADV06476.1| transcriptional regulator, putative pyruvate dehydrogenase complex repressor [Staphylococcus pseudintermedius HKU10-03] gi|323463716|gb|ADX75869.1| transcriptional regulator, GntR family [Staphylococcus pseudintermedius ED99] Length = 223 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 D ++AE+ +S + + L L G+ E+V+GR L + A IT Sbjct: 32 GDKLPTERKLAESYQVSRSVVREALSYLENTGVTESVQGRG---TLVK-AQDIT 81 >gi|269836533|ref|YP_003318761.1| pseudouridine synthase, RluA family [Sphaerobacter thermophilus DSM 20745] gi|269785796|gb|ACZ37939.1| pseudouridine synthase, RluA family [Sphaerobacter thermophilus DSM 20745] Length = 313 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R+++ A D IA IS + Q LVKAG V V G R Sbjct: 9 AVRIVLDVAAEEDGERLDRLIAARVAEISRSY----AQSLVKAGDVY-VNGEP-----AR 58 Query: 69 PADQITILDVVKAT 82 PA +I D ++ Sbjct: 59 PARRIHEGDTIEIL 72 >gi|225859944|ref|YP_002741454.1| putative transcriptional repressor [Streptococcus pneumoniae 70585] gi|225720967|gb|ACO16821.1| putative transcriptional repressor [Streptococcus pneumoniae 70585] Length = 146 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S++A +S+ + K ++ LVK G++ET + Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 >gi|206559431|ref|YP_002230192.1| GntR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035469|emb|CAR51347.1| GntR family regulatory protein [Burkholderia cenocepacia J2315] Length = 249 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70 D +++ A +S + + + + +G++ET G G L Sbjct: 35 RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRQTLGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRANDTD----LAALRRALDAI 139 >gi|209883191|ref|YP_002287048.1| transcriptional regulatory protein of ArsR family [Oligotropha carboxidovorans OM5] gi|209871387|gb|ACI91183.1| transcriptional regulatory protein of ArsR family [Oligotropha carboxidovorans OM5] Length = 120 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 11/98 (11%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRR 61 L++ T +R++ + I EA S + L L +AG+VE+ R Sbjct: 13 LSQETR--LRIVRHLVTAGPEGMSAGAIGEAMDSASSSRMSFHLGHLEQAGLVESRRE-- 68 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G + A +T+ +++ F + +C H C Sbjct: 69 -GRSIIYSAALVTLSSLIE-----FLMRDCCQGHPEVC 100 >gi|148984472|ref|ZP_01817760.1| adc operon repressor AdcR [Streptococcus pneumoniae SP3-BS71] gi|221232877|ref|YP_002512031.1| MarR family transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|225857739|ref|YP_002739250.1| putative transcriptional repressor [Streptococcus pneumoniae P1031] gi|303254009|ref|ZP_07340128.1| MarR-family regulatory protein [Streptococcus pneumoniae BS455] gi|303262123|ref|ZP_07348068.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS292] gi|303266217|ref|ZP_07352109.1| adc operon repressor AdcR [Streptococcus pneumoniae BS457] gi|303268884|ref|ZP_07354670.1| adc operon repressor AdcR [Streptococcus pneumoniae BS458] gi|147923249|gb|EDK74363.1| adc operon repressor AdcR [Streptococcus pneumoniae SP3-BS71] gi|220675339|emb|CAR69937.1| MarR-family regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225725955|gb|ACO21807.1| putative transcriptional repressor [Streptococcus pneumoniae P1031] gi|301800910|emb|CBW33569.1| MarR-family regulatory protein [Streptococcus pneumoniae OXC141] gi|302599040|gb|EFL66067.1| MarR-family regulatory protein [Streptococcus pneumoniae BS455] gi|302636763|gb|EFL67253.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS292] gi|302641583|gb|EFL71944.1| adc operon repressor AdcR [Streptococcus pneumoniae BS458] gi|302644265|gb|EFL74520.1| adc operon repressor AdcR [Streptococcus pneumoniae BS457] Length = 146 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S++A +S+ + K ++ LVK G++ET + Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 >gi|126737561|ref|ZP_01753291.1| regulatory protein GntR, HTH [Roseobacter sp. SK209-2-6] gi|126720954|gb|EBA17658.1| regulatory protein GntR, HTH [Roseobacter sp. SK209-2-6] Length = 247 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++A+ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELADHFQVSRPTVREALKRLAAQSLIRTQRGAAGG 73 >gi|260905593|ref|ZP_05913915.1| DeoR family transcriptional regulator [Brevibacterium linens BL2] Length = 332 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVR 65 R+L + ++ ++ + + + L + G V E++ G GG R Sbjct: 6 RLLSLLGMLAAGRTYTAGELGAHFGVTPRSVRRDIASLRELGYVIESLPGATGGYR 61 >gi|329888361|ref|ZP_08266959.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568] gi|328846917|gb|EGF96479.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568] Length = 111 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ H +IA+A + + L L +AG+V + R Sbjct: 21 AFRLLV---RHEPEGLPAGEIADALAVPANTMSAHLGVLSRAGLVNSER 66 >gi|311900418|dbj|BAJ32826.1| putative GntR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 460 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 19 IHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +H +AE +S + + + L G + + +G Sbjct: 31 LHPGVRLPSSRDLAEDLGVSRSVVVQAYEQLAAGGYLRSTQGSG 74 >gi|300071537|gb|ADJ60937.1| biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor [Lactococcus lactis subsp. cremoris NZ9000] Length = 326 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 M TK+ VL+ ++AE IS ++K + L + G Sbjct: 4 MQTTKQF-----VLLELLRQKGNWVSGDELAEELNISRESIWKAINTLKRKG 50 >gi|298241491|ref|ZP_06965298.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297554545|gb|EFH88409.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 306 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 I +L+ S+IA +S+ +F+ ++ L + GI + T G GG L Sbjct: 6 AIVLLL-----QGGRRTASEIARRFEVSKRTVFRDIEALCEMGIPIVTEAGVNGGYTL 58 >gi|227525029|ref|ZP_03955078.1| YbfA like protein [Lactobacillus hilgardii ATCC 8290] gi|227087840|gb|EEI23152.1| YbfA like protein [Lactobacillus hilgardii ATCC 8290] Length = 144 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ I+ + ++IA I + + +I+ LVK G +E VR Sbjct: 39 RILLEIKIN--HLINPNEIATHLKIDKSYTSRIINRLVKQGFLEKVR 83 >gi|326440457|ref|ZP_08215191.1| transcriptional repressor [Streptomyces clavuligerus ATCC 27064] Length = 347 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE ++ + + L G V G GG RL Sbjct: 22 SGAELAERLGVTARTVRRDADRLRALGYPVNASPGTGGGYRLG 64 >gi|260881531|ref|ZP_05404657.2| biotin-[acetyl-CoA-carboxylase] ligase [Mitsuokella multacida DSM 20544] gi|260848702|gb|EEX68709.1| biotin-[acetyl-CoA-carboxylase] ligase [Mitsuokella multacida DSM 20544] Length = 339 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 ++L D ++A+ +S ++K +Q L + G + + G L Sbjct: 15 KILALLREAGDSYLSGEEMAKRLGVSRTAVWKHIQELRRDGYDIVSHSRS--GYSLQSAP 72 Query: 71 DQIT 74 D + Sbjct: 73 DTLR 76 >gi|218671285|ref|ZP_03520955.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 296 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 R+L H + +A + +L +IL+ G++ET Sbjct: 30 RILFEIGSHEG--VSATALARDLHLDPAYLSRILKRFRAEGLIET 72 >gi|218663415|ref|ZP_03519345.1| HTH family transcriptional regulator [Rhizobium etli IE4771] Length = 110 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A ++++A+ +S+ + K L+ L +AG++ + R Sbjct: 21 LARLATGKATVAELADPFELSQPAISKHLKVLEQAGLIRSGR 62 >gi|171321540|ref|ZP_02910477.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] gi|171093175|gb|EDT38386.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] Length = 247 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L P ++++A + + + LV G + VR +RGG R I Sbjct: 12 LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + AT+ + H L + T+VL K A L +V + Sbjct: 71 AAA--IDATDPVVDIV-----HPHLVALRDASRETAVLGKIQGASVTYL------DVVES 117 Query: 134 RSSIK 138 +I+ Sbjct: 118 EQAIR 122 >gi|125624741|ref|YP_001033224.1| biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor [Lactococcus lactis subsp. cremoris MG1363] gi|124493549|emb|CAL98531.1| biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor [Lactococcus lactis subsp. cremoris MG1363] Length = 323 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 M TK+ VL+ ++AE IS ++K + L + G Sbjct: 1 MQTTKQF-----VLLELLRQKGNWVSGDELAEELNISRESIWKAINTLKRKG 47 >gi|116512641|ref|YP_811548.1| biotin operon repressor [Lactococcus lactis subsp. cremoris SK11] gi|116108295|gb|ABJ73435.1| Biotin operon repressor [Lactococcus lactis subsp. cremoris SK11] Length = 323 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 M TK+ VL+ ++AE IS ++K + L + G Sbjct: 1 MQTTKQF-----VLLELLRQKGNWVSGDELAEELNISRESIWKAINTLKRKG 47 >gi|120405775|ref|YP_955604.1| regulatory protein ArsR [Mycobacterium vanbaalenii PYR-1] gi|119958593|gb|ABM15598.1| transcriptional regulator, ArsR family [Mycobacterium vanbaalenii PYR-1] Length = 128 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++++ + +A+ ++E + L L +AG+VE+ R Sbjct: 54 VKIMSHLYSSAAGEENSGSLAKVLGLTESTVSHHLSQLRRAGLVESDR 101 >gi|56964252|ref|YP_175983.1| manganese transport transcriptional regulator [Bacillus clausii KSM-K16] gi|81365841|sp|Q5WF38|MNTR_BACSK RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|56910495|dbj|BAD65022.1| manganese transport regulator [Bacillus clausii KSM-K16] Length = 143 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K+ G+V T +G + G R Sbjct: 13 IYMLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSDYLVYERYRGLVLTAKGNKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|15614432|ref|NP_242735.1| hypothetical protein BH1869 [Bacillus halodurans C-125] gi|10174487|dbj|BAB05588.1| BH1869 [Bacillus halodurans C-125] Length = 313 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRG 62 I ++AEA +S + ++ L KAGI+ T V G+ G Sbjct: 33 MNIRELAEAVGLSSAIMTMHIKKLEKAGIIRTEMVPGKAG 72 >gi|302188841|ref|ZP_07265514.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae 642] Length = 249 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|301383221|ref|ZP_07231639.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato Max13] gi|302059064|ref|ZP_07250605.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato K40] gi|302133717|ref|ZP_07259707.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331018443|gb|EGH98499.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 228 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 73 ATIVTLRDVLAILE 86 >gi|284174050|ref|ZP_06388019.1| transcriptional regulator, MarR family protein [Sulfolobus solfataricus 98/2] Length = 92 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L + ++ + +I E IS L K ++ L + G ++ Sbjct: 6 LAILTLLSEGELSVKEIQEYVNISRRNLVKTIRKLERKGYIQ 47 >gi|114797496|ref|YP_761126.1| putative transcriptional regulator NolR [Hyphomonas neptunium ATCC 15444] gi|114737670|gb|ABI75795.1| putative transcriptional regulator NolR [Hyphomonas neptunium ATCC 15444] Length = 107 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+ + CA+ ++ ++Q+A+ S+ + + L L AG+V + R Sbjct: 34 RLKIMCAL-SEGELPVNQLAQLTGQSQSAVSQHLAKLRAAGLVTSRR 79 >gi|15790745|ref|NP_280569.1| hypothetical protein VNG1843C [Halobacterium sp. NRC-1] gi|169236488|ref|YP_001689688.1| hypothetical protein OE3589F [Halobacterium salinarum R1] gi|10581289|gb|AAG20049.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167727554|emb|CAP14342.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 218 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L A P +++I+E +S + LQ L AG+VE+ Sbjct: 17 RILQLLARK---PCYVTEISEYIGVSPKAVIDHLQQLDDAGLVESR 59 >gi|84687298|ref|ZP_01015178.1| transcriptional regulator, GntR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664731|gb|EAQ11215.1| transcriptional regulator, GntR family protein [Rhodobacterales bacterium HTCC2654] Length = 243 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 26/133 (19%) Query: 1 MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M L++ + + D ++ E +++ + + L+ L G+V++ Sbjct: 1 MRLSRPAQVAEAIKTFIVKEGLQPGDRLPSEPELIERFGMAKGTIREALRLLDAQGLVKS 60 Query: 57 VRGRRGGVRLCRPA--------------DQITILDVV---KATEESFFVAECFASHKIDC 99 G GG + P+ +TI D+ + E + A + C Sbjct: 61 RTGPGGGTFVHEPSPERAEALLANYFYFKDLTISDIYQIRRVLEP--ELVADLAGNLNPC 118 Query: 100 PLVGSCGLTSVLR 112 L L ++L Sbjct: 119 VLGE---LRTILA 128 >gi|158313483|ref|YP_001505991.1| helix-turn-helix type 11 domain-containing protein [Frankia sp. EAN1pec] gi|158108888|gb|ABW11085.1| Helix-turn-helix type 11 domain protein [Frankia sp. EAN1pec] Length = 366 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +IA +S +++ L L +AG+ V RG GG L Sbjct: 17 GRLTAREIAAELEVSVRTVYRDLDALAEAGVPVLAERGATGGYEL 61 >gi|325962280|ref|YP_004240186.1| ArsR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468367|gb|ADX72052.1| transcriptional regulator, ArsR family [Arthrobacter phenanthrenivorans Sphe3] Length = 113 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 22/42 (52%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A + P ++++AE IS+ + K +Q L AG+V R Sbjct: 24 IARLSRGPATVNELAEPFEISKQAVSKHIQVLELAGLVTRSR 65 >gi|323357828|ref|YP_004224224.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274199|dbj|BAJ74344.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 102 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 V +Y A R+ +IA+A I+E IL LV+AG ++ Sbjct: 24 HVFIYVARDPGA--RVREIADAVGITERTAHGILADLVEAGYLK 65 >gi|315649351|ref|ZP_07902440.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] gi|315275339|gb|EFU38708.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] Length = 289 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A+ +S L + L L G+ + +V+GR GG RL Sbjct: 1 MADEFGLSVRTLSRDLDELSVLGVPIYSVQGRGGGYRL 38 >gi|253750620|ref|YP_003024057.1| protein RepR [Streptococcus suis BM407] gi|251819052|emb|CAZ55669.1| protein RepR [Streptococcus suis BM407] Length = 496 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 20 HNDYP---NRISQIAEACCISELFLFKILQPLVKAG-IVET-VRGRRGGVRLC 67 ++D P + +I I E L +L+ L G I+ + RGR+GG+ L Sbjct: 384 NSDSPYLRVKKKEITATIGIPERSLDYVLKTLQSEGKILYSFKRGRQGGIILA 436 >gi|238026642|ref|YP_002910873.1| GntR family transcriptional regulator [Burkholderia glumae BGR1] gi|237875836|gb|ACR28169.1| Transcriptional regulator, GntR family protein [Burkholderia glumae BGR1] Length = 252 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 15/113 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR--------PA 70 D +++ +S + + + + +G++ET G G L Sbjct: 35 RPGDKLPTETEVMATQGVSRTVVREAISRMQASGLIETRHGI-GSFVLAPERRRTLGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 I T+ DV+ E + +EC + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRANDTD----LDSLRRALDAIAQS 142 >gi|254521680|ref|ZP_05133735.1| transcriptional regulator MarR family [Stenotrophomonas sp. SKA14] gi|219719271|gb|EED37796.1| transcriptional regulator MarR family [Stenotrophomonas sp. SKA14] Length = 154 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +R LM P RI +A AC +S L + + +V+ G + +V G Sbjct: 42 LRTLM-----AQGPCRIKDLALACGLSHSALSQTVAAMVRDGWLHSVIG 85 >gi|254393238|ref|ZP_05008391.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706878|gb|EDY52690.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 346 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++AE ++ + + L G V G GG RL Sbjct: 21 SGAELAERLGVTARTVRRDADRLRALGYPVNASPGTGGGYRLG 63 >gi|152969673|ref|YP_001334782.1| SorC family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580613|ref|YP_002239257.1| putative sugar-binding domain protein [Klebsiella pneumoniae 342] gi|238894156|ref|YP_002918890.1| putative SorC-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|262043176|ref|ZP_06016312.1| DeoR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936115|ref|YP_003440174.1| DeoR family transcriptional regulator [Klebsiella variicola At-22] gi|290510832|ref|ZP_06550202.1| transcriptional regulator [Klebsiella sp. 1_1_55] gi|329999630|ref|ZP_08303464.1| sugar-binding domain protein [Klebsiella sp. MS 92-3] gi|150954522|gb|ABR76552.1| putative transcriptional regulator, sorC family [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569671|gb|ACI11447.1| putative sugar-binding domain protein [Klebsiella pneumoniae 342] gi|238546472|dbj|BAH62823.1| putative SorC-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039454|gb|EEW40589.1| DeoR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288890824|gb|ADC59142.1| transcriptional regulator, DeoR family [Klebsiella variicola At-22] gi|289777548|gb|EFD85546.1| transcriptional regulator [Klebsiella sp. 1_1_55] gi|328538277|gb|EGF64420.1| sugar-binding domain protein [Klebsiella sp. MS 92-3] Length = 320 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 7 TDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +DY + L A+ + D +IA+ IS + + ++L+ + GIVE Sbjct: 6 SDYAL--LTEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVE 53 >gi|149926663|ref|ZP_01914923.1| regulatory protein GntR, HTH:UbiC transcription regulator-associated [Limnobacter sp. MED105] gi|149824592|gb|EDM83808.1| regulatory protein GntR, HTH:UbiC transcription regulator-associated [Limnobacter sp. MED105] Length = 291 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +AE +S + + + LQ LVK G+V RG+ Sbjct: 56 LAEQFNVSRVTMRRALQDLVKEGLVARGRGKG 87 >gi|86160318|ref|YP_467103.1| hypothetical protein Adeh_3902 [Anaeromyxobacter dehalogenans 2CP-C] gi|85776829|gb|ABC83666.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 221 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +QIAE ++ +++ L L A + + +GR GG L R Sbjct: 21 VTAAQIAERFGVTLRTVYRDLDALRSADLPLHAEQGRGGGYALDR 65 >gi|332561064|ref|ZP_08415382.1| GntR domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332274862|gb|EGJ20178.1| GntR domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 239 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+AE +S L L+ L GIV + +G Sbjct: 40 QLAEELGVSRPVLRAALERLRDEGIVHSRQGAG 72 >gi|330895423|gb|EGH27761.1| transcriptional regulator GntR [Pseudomonas syringae pv. japonica str. M301072PT] gi|330955504|gb|EGH55764.1| transcriptional regulator GntR [Pseudomonas syringae Cit 7] gi|330981039|gb|EGH79142.1| transcriptional regulator GntR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 249 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|330879529|gb|EGH13678.1| GntR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965252|gb|EGH65512.1| GntR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 228 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 73 ATIVTLRDVLAILE 86 >gi|324007695|gb|EGB76914.1| FCD domain protein [Escherichia coli MS 57-2] Length = 301 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|298695571|gb|ADI98793.1| probable regulatory protein DeoR family [Staphylococcus aureus subsp. aureus ED133] Length = 230 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 9 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68 Query: 73 ITI 75 I + Sbjct: 69 IAL 71 >gi|297157696|gb|ADI07408.1| putative GntR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 257 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 20 HNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 P Q+ E +S + K + L G++E + G+ G PA +TI Sbjct: 28 KPGSPLPSETQLIERYKVSRPTVRKAIAALRAEGLIEVIHGK-GSYVRAIPAPAVTI 83 >gi|325677246|ref|ZP_08156912.1| regulatory protein GntR [Rhodococcus equi ATCC 33707] gi|325551943|gb|EGD21639.1| regulatory protein GntR [Rhodococcus equi ATCC 33707] Length = 272 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 24/136 (17%) Query: 12 RVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG------- 63 R+L A D + +++ E ++ L + L+ L G+V RG RGG Sbjct: 34 RILRGDLA-EGDVLPKEAELREQYPVNVQSLREALRILEAEGLVRVRRGNRGGAVVHRPT 92 Query: 64 ---------VRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR 112 + L I DV +A E A C +V L ++ Sbjct: 93 PGNVAYSLSMVLAMSGTDID--DVGRALHEIEPMCAALCAEREDRATEVVP--ILRTLHE 148 Query: 113 KALNAFFDVLTQYSIE 128 ++L D++ ++ Sbjct: 149 ESLANVDDLVAATTLS 164 >gi|302381850|ref|YP_003817673.1| ArsR family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192478|gb|ADL00050.1| regulatory protein ArsR [Brevundimonas subvibrioides ATCC 15264] Length = 131 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM + + +S+I EA I + L + L L +A +V+T R Sbjct: 26 LMILSRLIEGERTVSEIDEATGIGQPALSQQLAELRRADVVKTRR 70 >gi|261602642|gb|ACX92245.1| transcriptional regulator, MarR family [Sulfolobus solfataricus 98/2] Length = 94 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L + ++ + +I E IS L K ++ L + G ++ Sbjct: 8 LAILTLLSEGELSVKEIQEYVNISRRNLVKTIRKLERKGYIQ 49 >gi|261417888|ref|YP_003251570.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319767300|ref|YP_004132801.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374345|gb|ACX77088.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC61] gi|317112166|gb|ADU94658.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC52] Length = 243 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE IS + + + + LV G + RG+ Sbjct: 28 QPGEMIPSERELAEMYDISRMTVRQAVNNLVNDGYLIRRRGKG 70 >gi|261418684|ref|YP_003252366.1| ArsR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765499|ref|YP_004131000.1| ArsR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375141|gb|ACX77884.1| transcriptional regulator, ArsR family [Geobacillus sp. Y412MC61] gi|317110365|gb|ADU92857.1| regulatory protein ArsR [Geobacillus sp. Y412MC52] Length = 123 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 +L A D I+ IA++ IS + K L+ L +AG+V + GR RL Sbjct: 35 MLQLLA---DNELSIAAIAKSFPISRTAVNKHLRVLSEAGLVSCRKTGRETRYRLEPEP 90 >gi|254428414|ref|ZP_05042121.1| Ribonuclease BN-like family [Alcanivorax sp. DG881] gi|196194583|gb|EDX89542.1| Ribonuclease BN-like family [Alcanivorax sp. DG881] Length = 439 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 17/102 (16%) Query: 41 LFKILQP------------LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 + K++Q LV A ++ R GG L R +++ +V + Sbjct: 314 VRKVMQESGISQWDEFRNLLVNAKLIR--RTEEGGYMLSRDLRNLSLGQLVAML--PWPA 369 Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130 + PL L + + +A L S++ L Sbjct: 370 HTQLRVRQQQAPLPWETALKTRMDQAREGMMAPLD-ISLDTL 410 >gi|84687073|ref|ZP_01014955.1| transcriptional regulator, Fnr-type [Maritimibacter alkaliphilus HTCC2654] gi|84664844|gb|EAQ11326.1| transcriptional regulator, Fnr-type [Rhodobacterales bacterium HTCC2654] Length = 246 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 23/36 (63%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 P ++++AC + + + ++++ L ++GIV+ RG Sbjct: 181 PLTQKELSDACGTTSIHMNRVVRKLRESGIVDISRG 216 >gi|325833829|ref|ZP_08166179.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] gi|325485187|gb|EGC87659.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] Length = 128 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++A ++ + K+ Q L G++ + RG+R Sbjct: 33 RPGDTLPTVRELAIQLGVNYNTIHKVYQDLETDGLILSGRGKR 75 >gi|331660989|ref|ZP_08361921.1| YjjM protein product [Escherichia coli TA206] gi|331052031|gb|EGI24070.1| YjjM protein product [Escherichia coli TA206] Length = 301 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|292653983|ref|YP_003533881.1| hypothetical protein HVO_A0436 [Haloferax volcanii DS2] gi|291369795|gb|ADE02023.1| unknown protein [Haloferax volcanii DS2] Length = 307 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R L A+H + +S +A + S + ++++ L AG+VET R Sbjct: 7 VRALT--ALHGEQ--TVSALATSLDRSLSYTSELVERLETAGLVETRR 50 >gi|284162792|ref|YP_003401415.1| TrmB family transcriptional regulator [Archaeoglobus profundus DSM 5631] gi|284012789|gb|ADB58742.1| transcriptional regulator, TrmB [Archaeoglobus profundus DSM 5631] Length = 240 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I++L Y A ++ R ++I E ++ L + L+ LV+ G V+ Sbjct: 9 IKILSYLAEKDEGKARFNEIVEELGLARATLSRNLKHLVEKGYVK 53 >gi|284161580|ref|YP_003400203.1| TrmB family transcriptional regulator [Archaeoglobus profundus DSM 5631] gi|284011577|gb|ADB57530.1| transcriptional regulator, TrmB [Archaeoglobus profundus DSM 5631] Length = 231 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 1 MHLTK------RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M +T+ ++Y + L +H + IAE I ++ ++ L G+V Sbjct: 1 MKITEVLKYFGLSEYEAKALYVLLLHGE--LTAKDIAELSGIPRTSVYDVMNLLESKGLV 58 Query: 55 ET 56 + Sbjct: 59 VS 60 >gi|260595956|ref|YP_003208527.1| DNA-binding transcriptional repressor LldR [Cronobacter turicensis z3032] gi|260215133|emb|CBA26918.1| Putative L-lactate dehydrogenase operon regulatory protein [Cronobacter turicensis z3032] Length = 262 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 11 IRVLM-YCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 IR L+ + Q+A+ +S L + LQ L++ G++ + RG Sbjct: 16 IRALIAERGLEAGMRLPSERQLAQELGVSRNSLREALQILIRDGLLISRRGGG 68 >gi|260858533|ref|YP_003232424.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257757182|dbj|BAI28684.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|323157597|gb|EFZ43703.1| bacterial regulatory s, gntR family protein [Escherichia coli EPECa14] Length = 301 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|257485292|ref|ZP_05639333.1| GntR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010835|gb|EGH90891.1| GntR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 244 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 16/103 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102 Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 E + L L + AF +L Sbjct: 103 LLEFRLSL------EVEAAGLAAQRRSPEALLELKRAFDALLD 139 >gi|257387429|ref|YP_003177202.1| MarR family transcriptional regulator [Halomicrobium mukohataei DSM 12286] gi|257169736|gb|ACV47495.1| transcriptional regulator, MarR family [Halomicrobium mukohataei DSM 12286] Length = 218 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L A P +++I+E +S + LQ L AG++E+ Sbjct: 17 RILRLLAHK---PCYVTEISEYIGVSPKAVIDHLQKLEDAGLIESR 59 >gi|260589230|ref|ZP_05855143.1| transcriptional regulator, GntR family [Blautia hansenii DSM 20583] gi|260540311|gb|EEX20880.1| transcriptional regulator, GntR family [Blautia hansenii DSM 20583] Length = 117 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 6/33 (18%), Positives = 16/33 (48%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + ++A+ ++ + K L L G++ + R Sbjct: 36 SVRELAQTAGVNPNTMQKALSELEHTGLLYSQR 68 >gi|226328367|ref|ZP_03803885.1| hypothetical protein PROPEN_02261 [Proteus penneri ATCC 35198] gi|225203100|gb|EEG85454.1| hypothetical protein PROPEN_02261 [Proteus penneri ATCC 35198] Length = 111 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + +S++ E+ I + L + L L G+V T R Sbjct: 37 LLLLCQLSQGEKSVSELEESLGIRQPTLSQQLTVLRNEGLVNTRR 81 >gi|212710644|ref|ZP_03318772.1| hypothetical protein PROVALCAL_01710 [Providencia alcalifaciens DSM 30120] gi|212686725|gb|EEB46253.1| hypothetical protein PROVALCAL_01710 [Providencia alcalifaciens DSM 30120] Length = 341 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 10 GIRVLMYC--AIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +R + A H D P QIA+ + + KIL+ L I V Sbjct: 30 ALRAAIKLKLAEHLQDGPQTAKQIAQKIEANATMIHKILRLLATQNIFTAV 80 >gi|160892118|ref|ZP_02073121.1| hypothetical protein BACUNI_04581 [Bacteroides uniformis ATCC 8492] gi|270296277|ref|ZP_06202477.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480545|ref|ZP_07939636.1| HTH domain-containing protein [Bacteroides sp. 4_1_36] gi|156858596|gb|EDO52027.1| hypothetical protein BACUNI_04581 [Bacteroides uniformis ATCC 8492] gi|270273681|gb|EFA19543.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903303|gb|EFV25166.1| HTH domain-containing protein [Bacteroides sp. 4_1_36] Length = 181 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-GGVR 65 +D P +A IS + K + L GI+ + G GG Sbjct: 127 SDPPMSAETMAYKIGISSRAVEKQIAKLRSMGIL-SREGADFGGYW 171 >gi|29828003|ref|NP_822637.1| MarR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29605105|dbj|BAC69172.1| putative MarR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 171 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 A R+ +IA+ +S+ L +++ L K G+V RG Sbjct: 88 APDGGSGYRVQEIADRVHLSQSALSRLIGRLEKDGLVT--RG 127 >gi|20807656|ref|NP_622827.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20516201|gb|AAM24431.1| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 146 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 V+M + + P + +A IS L I+ LV+ G+V+ Sbjct: 44 VIMVLSENKHTPMYMKDVASELGISPSTLTTIVDKLVEKGLVK 86 >gi|332085784|gb|EGI90948.1| bacterial extracellular solute-binding protein, family 5 [Shigella dysenteriae 155-74] Length = 566 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62 +S++AE C SE + +L+ +AG +E + RG+RG Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRG 65 >gi|322830891|ref|YP_004210918.1| MarR family transcriptional regulator [Rahnella sp. Y9602] gi|321166092|gb|ADW71791.1| transcriptional regulator, MarR family [Rahnella sp. Y9602] Length = 310 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%) Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R +M+ +H + +IA +S + ++L AGIV Sbjct: 6 ATRAMMHLVAKLHYESDMSQVEIARKLDVSTATISRLLNKARAAGIVR 53 >gi|317152875|ref|YP_004120923.1| phosphonates metabolism transcriptional regulator PhnF [Desulfovibrio aespoeensis Aspo-2] gi|316943126|gb|ADU62177.1| phosphonates metabolism transcriptional regulator PhnF [Desulfovibrio aespoeensis Aspo-2] Length = 241 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++E ++ + + + L +AG+V +GR Sbjct: 28 RPGDRLPSENALSEKYGVNRHTIRRAMAALEQAGLVRVEQGRG 70 >gi|288936812|ref|YP_003440871.1| GntR family transcriptional regulator with [Klebsiella variicola At-22] gi|288891521|gb|ADC59839.1| transcriptional regulator, GntR family with aminotransferase domain [Klebsiella variicola At-22] Length = 475 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+L+ + P ++A A +S + L L + G + + +G + L Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92 Query: 67 CRPADQ 72 Sbjct: 93 PERPAD 98 >gi|258423685|ref|ZP_05686572.1| helix-turn-helix type 11 domain-containing protein [Staphylococcus aureus A9635] gi|257846077|gb|EEV70104.1| helix-turn-helix type 11 domain-containing protein [Staphylococcus aureus A9635] Length = 230 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 9 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68 Query: 73 ITI 75 I + Sbjct: 69 IAL 71 >gi|227356459|ref|ZP_03840847.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163569|gb|EEI48490.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 111 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + +S++ E+ I + L + L L G+V T R Sbjct: 37 LLLLCQLSQGEKSVSELEESLGIRQPTLSQQLTVLRNEGLVNTRR 81 >gi|226304673|ref|YP_002764631.1| MerR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226183788|dbj|BAH31892.1| putative MerR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 152 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 5 KRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 Y + ++ + P++ ++A + +++ K+++ L K+G V + R Sbjct: 34 THAQYSVLASLHGLVSAGERPSQ-RELAAHTGLQRIYISKLVRALEKSGFVVSER 87 >gi|209917662|ref|YP_002291746.1| hypothetical protein ECSE_0471 [Escherichia coli SE11] gi|209910921|dbj|BAG75995.1| conserved hypothetical protein [Escherichia coli SE11] Length = 566 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62 +S++AE C SE + +L+ +AG +E + RG+RG Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRG 65 >gi|154686312|ref|YP_001421473.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] gi|154352163|gb|ABS74242.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] Length = 196 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 10/80 (12%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L+ A + IA+ ++ K++ L K G V TV + L + A I Sbjct: 50 LIAIAHLPTEDTTLMNIAKKLGTTKQTANKLISSLAKKGYVHTVPSK-----LDKRAINI 104 Query: 74 TILDVVKATEESFFVAECFA 93 I E + C Sbjct: 105 EI-----TPEGKKALISCSE 119 >gi|219850307|ref|YP_002464740.1| putative transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544566|gb|ACL26304.1| putative transcriptional regulator [Chloroflexus aggregans DSM 9485] Length = 103 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ A + +IA+ I+E + +IL L G + VR Sbjct: 12 VLLCIARNP--RVTAHEIAQMVGITERAVQRILHDLHTDGYISHVR 55 >gi|92112536|ref|YP_572464.1| GntR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795626|gb|ABE57765.1| transcriptional regulator, GntR family [Chromohalobacter salexigens DSM 3043] Length = 261 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++AE +S L + +Q L G++ + +G Sbjct: 31 GEKLPPERELAEHFGVSRPSLREAIQKLAARGLLTSRQGGG 71 >gi|91773142|ref|YP_565834.1| hypothetical protein Mbur_1161 [Methanococcoides burtonii DSM 6242] gi|91712157|gb|ABE52084.1| Hypothetical protein Mbur_1161 [Methanococcoides burtonii DSM 6242] Length = 175 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 23/49 (46%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++VL Y + ++ I + I + L++ + L + G+++ R Sbjct: 15 ALKVLAYIGLQSEGSADFQDILDNLDIQKSTLWRYISSLREQGLIDISR 63 >gi|134295193|ref|YP_001118928.1| GntR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138350|gb|ABO54093.1| transcriptional regulator, GntR family [Burkholderia vietnamiensis G4] Length = 253 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70 D +++ A +S + + + + +G++ET G G L Sbjct: 35 RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRRALGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRASDAD----LAALRRALDAI 139 >gi|330958129|gb|EGH58389.1| transcriptional regulator GntR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 249 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|331082638|ref|ZP_08331761.1| hypothetical protein HMPREF0992_00685 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400257|gb|EGG79899.1| hypothetical protein HMPREF0992_00685 [Lachnospiraceae bacterium 6_1_63FAA] Length = 117 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 6/33 (18%), Positives = 16/33 (48%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + ++A+ ++ + K L L G++ + R Sbjct: 36 SVRELAQTAGVNPNTMQKALSELEHTGLLYSQR 68 >gi|325498264|gb|EGC96123.1| solute-binding family 5 protein [Escherichia fergusonii ECD227] Length = 566 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 I ++AE C SE L +L+ ++G +E + RG+RG +R + + + + Sbjct: 24 VTIGELAERCFCSERHLRTLLRQAQESGWLEWQAQSGRGKRGKLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|325977737|ref|YP_004287453.1| msm operon regulatory protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177665|emb|CBZ47709.1| msm operon regulatory protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 286 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 20/35 (57%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 + YC ++ D P ++ +IA+ ++ +L ++ + Sbjct: 175 AVAYCNLNLDKPIKVQEIADYLNLNRSYLARLFKQ 209 >gi|324114672|gb|EGC08640.1| extracellular solute-binding protein [Escherichia fergusonii B253] Length = 566 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 I ++AE C SE L +L+ ++G +E + RG+RG +R + + + + Sbjct: 24 VTIGELAERCFCSERHLRTLLRQAQESGWLEWQAQSGRGKRGKLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|323976070|gb|EGB71163.1| extracellular solute-binding protein [Escherichia coli TW10509] Length = 566 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 I ++AE C SE L +L+ ++G +E + RG+RG +R + + + + Sbjct: 24 VTIGELAERCFCSERHLRTLLRQAQESGWLEWQAQSGRGKRGKLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|306830839|ref|ZP_07464001.1| msm operon regulatory protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426862|gb|EFM29972.1| msm operon regulatory protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 286 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 20/35 (57%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 + YC ++ D P ++ +IA+ ++ +L ++ + Sbjct: 175 AVAYCNLNLDKPIKVQEIADYLNLNRSYLARLFKQ 209 >gi|261408783|ref|YP_003245024.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285246|gb|ACX67217.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. Y412MC10] Length = 230 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 + ++AE +S + + L L + G+ + G+ GG Sbjct: 21 TVGELAEEFSVSYRTMLRYLHELSRLGVPLYANEGKNGGY 60 >gi|295399470|ref|ZP_06809452.1| transcriptional regulator, GntR family [Geobacillus thermoglucosidasius C56-YS93] gi|312109971|ref|YP_003988287.1| GntR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978936|gb|EFG54532.1| transcriptional regulator, GntR family [Geobacillus thermoglucosidasius C56-YS93] gi|311215072|gb|ADP73676.1| transcriptional regulator, GntR family [Geobacillus sp. Y4.1MC1] Length = 126 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++A ++ + + L + GIVET RG+ Sbjct: 31 GEKLPSVREMAVKTGVNPNTIQRTYSELERMGIVETRRGQG 71 >gi|239934260|ref|ZP_04691213.1| hypothetical protein SghaA1_39032 [Streptomyces ghanaensis ATCC 14672] Length = 114 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 RVL+ A +R+ +A+A I+E + I+ L AG + R Sbjct: 23 RVLIALARDPG--SRLRDVADAIDITERAVQLIVADLEAAGYLTRTR 67 >gi|229005209|ref|ZP_04162929.1| Transcriptional regulator, GntR family with aminotransferase domain [Bacillus mycoides Rock1-4] gi|228756069|gb|EEM05394.1| Transcriptional regulator, GntR family with aminotransferase domain [Bacillus mycoides Rock1-4] Length = 503 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +H D + IA+ IS L + K + L G V+ +G+ Sbjct: 46 LHGDSLPSLRTIADDLKISILTVRKAYKQLETKGYVQIKQGKG 88 >gi|227512044|ref|ZP_03942093.1| YbfA-like protein [Lactobacillus buchneri ATCC 11577] gi|227084696|gb|EEI20008.1| YbfA-like protein [Lactobacillus buchneri ATCC 11577] Length = 144 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ I+ + ++IA I + + +I+ LVK G +E VR Sbjct: 39 RILLEIKIN--HLINPNEIATHLKIDKSYTSRIINRLVKQGFLEKVR 83 >gi|219848363|ref|YP_002462796.1| MarR family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542622|gb|ACL24360.1| transcriptional regulator, MarR family [Chloroflexus aggregans DSM 9485] Length = 143 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L A D + ++A+A I+ L + + LV+ G++E Sbjct: 42 LRLLSLLA--PDRSLSMRELADALNITPPSLTALTRRLVQNGLIE 84 >gi|218459145|ref|ZP_03499236.1| HTH family transcriptional regulator [Rhizobium etli Kim 5] Length = 110 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A ++++A+ +S+ + K L+ L +AG++ + R Sbjct: 21 LARLATGKATVAELADPFELSQPAISKHLKVLEQAGLIRSGR 62 >gi|118587924|ref|ZP_01545334.1| transcriptional regulator, GntR family protein [Stappia aggregata IAM 12614] gi|118439546|gb|EAV46177.1| transcriptional regulator, GntR family protein [Stappia aggregata IAM 12614] Length = 236 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-----RRGG 63 + ++AE IS L K L L + G++E ++G R+GG Sbjct: 33 GERLPPEREMAEELGISIGTLRKALADLTQKGLLERIQGSGNYIRQGG 80 >gi|86356084|ref|YP_467976.1| ArsR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280186|gb|ABC89249.1| probable transcriptional regulator protein, ArsR family [Rhizobium etli CFN 42] Length = 129 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++L Y + +IAE IS+ + + L L AG++ Sbjct: 40 KILAYLSASG---LTAGEIAERFSISKPAVSQHLSILETAGLIR 80 >gi|326440846|ref|ZP_08215580.1| multi-domain regulator [Streptomyces clavuligerus ATCC 27064] Length = 1267 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 16/88 (18%) Query: 11 IRVLM-YCAIHNDYPNRISQIAEA-------CCISELFLFKILQPLVKAGIVETVRGRRG 62 +R L+ A+ P + IA + ++ L +A E V G Sbjct: 26 LRALLTVLALRPGRPVTVGLIAAEIWDEEPPEDTPGA-VQALVGRLRRAIGREAVESVAG 84 Query: 63 GVRLCRPADQITI-------LDVVKATE 83 G RL AD + + + V+A E Sbjct: 85 GYRLRADADDVDLHRFDRLAGEGVRAFE 112 >gi|325002355|ref|ZP_08123467.1| GntR family transcriptional regulator [Pseudonocardia sp. P1] Length = 130 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++ EA I+ + K + L + G+VE RG Sbjct: 32 RAGDRLPTAREVVEATAINPNTVLKAYRELERDGLVEAKRGVG 74 >gi|313124006|ref|YP_004034265.1| transcriptional regulator, arsr family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280569|gb|ADQ61288.1| Transcriptional regulator, ArsR family [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 100 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I +L Y H + P I +S+ + K L L K V+ Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKYDFVQ 65 >gi|311898500|dbj|BAJ30908.1| hypothetical protein KSE_51290 [Kitasatospora setae KM-6054] Length = 223 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 CA+ +++I+ + ++ L +AG+V + GG +P +T+L Sbjct: 156 CALCATDVKSVAEISALLNLPLGVARILVADLAEAGLVAIHQPAAGGESGNQP--DVTLL 213 Query: 77 D 77 + Sbjct: 214 E 214 >gi|290510132|ref|ZP_06549502.1| transcriptional regulator [Klebsiella sp. 1_1_55] gi|289776848|gb|EFD84846.1| transcriptional regulator [Klebsiella sp. 1_1_55] Length = 475 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+L+ + P ++A A +S + L L + G + + +G + L Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92 Query: 67 CRPADQ 72 Sbjct: 93 PERPAD 98 >gi|261416449|ref|YP_003250132.1| putative transcriptional regulator [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372905|gb|ACX75650.1| putative transcriptional regulator [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327270|gb|ADL26471.1| helix-turn-helix DNA-binding domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 491 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR-RGGVR 65 + I D +IA IS + + K ++ + + GI++ V G +GG Sbjct: 438 ILLIIKQDPSVSQDEIATIVGISRIHVNKNMKKMEQKGIIKRV-GPDKGGHW 488 >gi|239940764|ref|ZP_04692701.1| putative AfsR-like transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 342 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 21/79 (26%) Query: 11 IRVLM-YCAIHNDYPNRISQI----------AEACCISELFLFKILQPLVKA---GIVET 56 +R L+ A+ + A+A L ++ L +A G VE+ Sbjct: 29 LRALLTVLALRPGRTVPAGHLVDEVWDGDPPADAAGA----LQALVGRLRRALGRGAVES 84 Query: 57 VRGRRGGVRLCRPADQITI 75 V GG RL P D + + Sbjct: 85 V---AGGYRLAAPPDAVDL 100 >gi|229822458|ref|YP_002883984.1| ROK family protein [Beutenbergia cavernae DSM 12333] gi|229568371|gb|ACQ82222.1| ROK family protein [Beutenbergia cavernae DSM 12333] Length = 402 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 12/60 (20%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-------RGRRG 62 +R ++ D +++A +S+ + +I+ L+ AG V V RGR G Sbjct: 23 ALRAILD-----DGQATRAELARRLGLSKPAVTRIVGDLLAAGYVAEVGPEAANGRGRPG 77 >gi|225021784|ref|ZP_03710976.1| hypothetical protein CORMATOL_01812 [Corynebacterium matruchotii ATCC 33806] gi|224945480|gb|EEG26689.1| hypothetical protein CORMATOL_01812 [Corynebacterium matruchotii ATCC 33806] Length = 151 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72 +++ D+ ++ E S+ + + L+ L KA IVE R GR RL PA Sbjct: 63 IIHLLAQRDHFV--YELVETLGSSQPLISQHLRILRKANIVEHHRSGRLITYRLRCPAA- 119 Query: 73 ITILDVVKATEESFFVAECFASHKID 98 LD+++ C++ D Sbjct: 120 ---LDIIE-----LAATTCYSDRHHD 137 >gi|218692743|ref|YP_002400955.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218430307|emb|CAV18186.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] Length = 301 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|167551727|ref|ZP_02345480.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323428|gb|EDZ11267.1| bacterial extracellular solute-binding protein, family 5 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 566 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62 +S++AE C SE L +L+ +AG + ++ RG+RG Sbjct: 25 TVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65 >gi|226198631|ref|ZP_03794197.1| transcriptional regulator, IclR family [Burkholderia pseudomallei Pakistan 9] gi|225929374|gb|EEH25395.1| transcriptional regulator, IclR family [Burkholderia pseudomallei Pakistan 9] Length = 248 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 VL A +D P ++AE I + + +I LV AG + Sbjct: 3 VLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 43 >gi|104774192|ref|YP_619172.1| ArsR family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423273|emb|CAI98108.1| Transcriptional regulator (ArsR family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125973|gb|ADY85303.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 100 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 I +L Y H + P I +S+ + K L L K V+ Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKYDFVQ 65 >gi|88854412|ref|ZP_01129079.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] gi|88816220|gb|EAR26075.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] Length = 108 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 19/42 (45%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A + S +AE +S + K L L AG+VE VR Sbjct: 21 LAALGEGEASASALAERMPVSRQAIAKHLSVLHDAGLVEPVR 62 >gi|87119290|ref|ZP_01075188.1| transcriptional regulator of pyruvate dehydrogenase complex [Marinomonas sp. MED121] gi|86165681|gb|EAQ66948.1| transcriptional regulator of pyruvate dehydrogenase complex [Marinomonas sp. MED121] Length = 248 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 13 VLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ D ++AE +S L + +Q L G+V + +G Sbjct: 17 MMIEGLLKPGDRLPPERELAERFSVSRPSLREAIQNLKAKGMVISRQGGG 66 >gi|329930486|ref|ZP_08284026.1| HTH domain protein [Paenibacillus sp. HGF5] gi|328934864|gb|EGG31354.1| HTH domain protein [Paenibacillus sp. HGF5] Length = 230 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 + ++AE +S + + L L + G+ + G+ GG Sbjct: 21 TVGELAEEFSVSYRTMLRYLHELSRLGVPLYANEGKNGGY 60 >gi|291298981|ref|YP_003510259.1| hypothetical protein Snas_1462 [Stackebrandtia nassauensis DSM 44728] gi|290568201|gb|ADD41166.1| protein of unknown function DUF43 [Stackebrandtia nassauensis DSM 44728] Length = 402 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL A H P + +++ + + I L K GIV+T R Sbjct: 45 VLRAIARH--EPVAVRELSRHVELPVPIVAAIGNELRKRGIVDTQR 88 >gi|271969373|ref|YP_003343569.1| hypothetical protein Sros_8175 [Streptosporangium roseum DSM 43021] gi|270512548|gb|ACZ90826.1| hypothetical protein Sros_8175 [Streptosporangium roseum DSM 43021] Length = 324 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 P + +AE IS + L AG++ T R GG L Sbjct: 265 PATTTSVAERVGISLASASEHTTVLRNAGLISTTR--TGGAVL 305 >gi|256827697|ref|YP_003151656.1| Mn-dependent transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583840|gb|ACU94974.1| Mn-dependent transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 137 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 +Y R IA S+ + + + L K G++ G + L ++I Sbjct: 16 IYLLQQRSDNVRAVDIAAEMGFSKPTISEWMGKLKKEGLISAA--ANGSIILSEHGEKI 72 >gi|229028447|ref|ZP_04184569.1| Transcriptional regulator, DeoR [Bacillus cereus AH1271] gi|228732896|gb|EEL83756.1| Transcriptional regulator, DeoR [Bacillus cereus AH1271] Length = 317 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +L++ + +IA IS + + + L G+ + +GR GG + Sbjct: 10 ILIFASAK--RTFTAQEIANEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61 >gi|225872062|ref|YP_002753517.1| hypothetical protein ACP_0376 [Acidobacterium capsulatum ATCC 51196] gi|225792700|gb|ACO32790.1| hypothetical protein ACP_0376 [Acidobacterium capsulatum ATCC 51196] Length = 204 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLV---KAGIVETVRGRRGGVRLCRPADQ 72 D RIS+I + ISE + +++ LV + + + G GG L ++ Sbjct: 103 RDRAIRISEIRQRLEISERTIKDLVRSLVTDFRLPVGASRDGVDGGYYLVMTPEE 157 >gi|218703052|ref|YP_002410681.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218373038|emb|CAR20927.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] Length = 301 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|194016128|ref|ZP_03054743.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] gi|194012483|gb|EDW22050.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] Length = 320 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +++ + +D QI+E ++ +++ + L +G+ + + G GG RL Sbjct: 7 LLAILWM-LRSDKKITAKQISEKLEMNIRTVYRYIDTLSTSGVPIISEPGHNGGYRL 62 >gi|171778278|ref|ZP_02919484.1| hypothetical protein STRINF_00326 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282978|gb|EDT48402.1| hypothetical protein STRINF_00326 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 146 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 ++Y + D I I IS+ +++ + K G +E V Sbjct: 40 AVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGFIEVV 84 >gi|146305348|ref|YP_001185813.1| GntR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573549|gb|ABP83081.1| transcriptional regulator, GntR family [Pseudomonas mendocina ymp] Length = 234 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 8 DYGIRVLMYCAIH-----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +Y ++ + D +AE +S L + L L G++ G+ Sbjct: 11 EYALQAIRRLIEEEGYRPGDALPSQRDLAERLGVSRASLREALSSLSALGLISVQAGKG 69 >gi|104781744|ref|YP_608242.1| GntR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110731|emb|CAK15444.1| putative transcriptional regulator, GntR family [Pseudomonas entomophila L48] Length = 249 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 12/79 (15%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D SQI +S + + + L AG VET G GG R+ Sbjct: 36 RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPSTGGFRI--DP 93 Query: 71 DQI-TILDVVKATEESFFV 88 I T+ +V+ E + Sbjct: 94 ATIVTLREVLAVLELRIAL 112 >gi|70730919|ref|YP_260660.1| transcriptional regulator, GntR family/amidohydrolase family protein [Pseudomonas fluorescens Pf-5] gi|68345218|gb|AAY92824.1| transcriptional regulator, GntR family/amidohydrolase family protein [Pseudomonas fluorescens Pf-5] Length = 536 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 D S++AEA +S + + + L AG+V + +G Sbjct: 30 RPGDRIPTESRLAEAFAVSRNVVREAVARLNSAGLVVSRQG 70 >gi|83589469|ref|YP_429478.1| signal-transduction protein [Moorella thermoacetica ATCC 39073] gi|83572383|gb|ABC18935.1| putative signal-transduction protein with CBS domains [Moorella thermoacetica ATCC 39073] Length = 211 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 11/69 (15%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ------ 72 + P QIA ++ L L L AGI+E G L Q Sbjct: 14 VKRSGPITSQQIAAELNLTRATLRPDLAILTMAGILEARPRV--GYFLSSKPSQALVAEE 71 Query: 73 ---ITILDV 78 I + D+ Sbjct: 72 IKKIRVGDI 80 >gi|33597941|ref|NP_885584.1| transcriptional regulator [Bordetella parapertussis 12822] gi|33574370|emb|CAE38708.1| probable transcriptional regulator [Bordetella parapertussis] Length = 266 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R++ + A +D + IA+ + ++LQ LV +++ V+G R Sbjct: 12 VRLIAFLASQDDD-VGVKDIADELQLPHSTAHRLLQQLVALNLMQRVQGAR 61 >gi|33591975|ref|NP_879619.1| transcriptional regulator [Bordetella pertussis Tohama I] gi|33602848|ref|NP_890408.1| transcriptional regulator [Bordetella bronchiseptica RB50] gi|33571619|emb|CAE41109.1| probable transcriptional regulator [Bordetella pertussis Tohama I] gi|33577290|emb|CAE35847.1| probable transcriptional regulator [Bordetella bronchiseptica RB50] gi|332381391|gb|AEE66238.1| transcriptional regulator [Bordetella pertussis CS] Length = 266 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R++ + A +D + IA+ + ++LQ LV +++ V+G R Sbjct: 12 VRLIAFLASQDDD-VGVKDIADELQLPHSTAHRLLQQLVALNLMQRVQGAR 61 >gi|27376154|ref|NP_767683.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349293|dbj|BAC46308.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 13/105 (12%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 A+ P + IA +S + + L+ LV +G+VE G + +P Sbjct: 61 ALAPGSPLDETDIARRFNVSRTPVREALRQLVASGLVEAR--PHRGAVVAQP-------- 110 Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 + E + E A + C + + +++ R L A + L Sbjct: 111 ---SIERLKSMFEAMAELEALCAGLAAERMSAAERHGLEAIHEEL 152 >gi|332716680|ref|YP_004444146.1| transcriptional regulator, ArsR family [Agrobacterium sp. H13-3] gi|325063365|gb|ADY67055.1| transcriptional regulator, ArsR family [Agrobacterium sp. H13-3] Length = 118 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 16/42 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H IA A + + + L L +AG+V + R Sbjct: 25 LVRHAPEGLPAGDIARALVVPQNTMSAHLNVLSRAGLVSSQR 66 >gi|295093513|emb|CBK82604.1| AraC-type DNA-binding domain-containing proteins [Coprococcus sp. ART55/1] Length = 253 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 16/37 (43%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R + Y H I++I+E + +L K+ Sbjct: 144 VRAMDYVYDHLHERIEITEISEFVGVERSYLSKLFHK 180 >gi|290958586|ref|YP_003489768.1| ArsR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260648112|emb|CBG71220.1| putative ArsR arsenic resistance operon repressor [Streptomyces scabiei 87.22] Length = 119 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + ++ A +S+ + L+ L +AG+++ R Sbjct: 41 LRLLSMIASRPGGEVCVCELTPAFDLSQPTISHHLKLLRQAGLIDCER 88 >gi|226307842|ref|YP_002767802.1| DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186959|dbj|BAH35063.1| putative DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 322 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +++A+ I+ + + + L G V+ G GG RL A+ Sbjct: 22 SGAELADKLAITPRTVRRDVDRLRDLGYPVDATVGVGGGYRLGAGAE 68 >gi|226306785|ref|YP_002766745.1| DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226185902|dbj|BAH34006.1| putative DeoR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 234 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 11 IRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L+ D S+++E ++ + + ++ L+ +G +E G GG RL Sbjct: 7 LHALVEELRRQGDRGATCSRLSEEFGVTTRTIKRDIETLMMSGAAIEARSGPGGGYRL 64 >gi|222106466|ref|YP_002547257.1| transcriptional regulator ROK family [Agrobacterium vitis S4] gi|221737645|gb|ACM38541.1| transcriptional regulator ROK family [Agrobacterium vitis S4] Length = 396 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R M +H P + +A+ +S+ + ++++ L AG V Sbjct: 15 SVRAAMDILLHQG-PTSRADLAKKTGLSKQTMSEVIRTLETAGWVR 59 >gi|254475124|ref|ZP_05088510.1| transcriptional repressor MdcY, GntR family [Ruegeria sp. R11] gi|214029367|gb|EEB70202.1| transcriptional repressor MdcY, GntR family [Ruegeria sp. R11] Length = 234 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ A +AE IS L ++L L G++++V G Sbjct: 33 CLLDYA--PGTRLSEVALAEEFGISRTPLRRVLGRLEDEGLLQSVHGAG 79 >gi|167582425|ref|ZP_02375299.1| transcriptional regulator, putative [Burkholderia thailandensis TXDOH] Length = 248 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 VL A +D P ++AE I + + +I LV AG + Sbjct: 3 VLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 43 >gi|29833078|ref|NP_827712.1| DeoR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29610200|dbj|BAC74247.1| putative DeoR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 344 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +AE ++ + + + L + G V G GG +L A+ Sbjct: 25 LAERLGVTPRTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 67 >gi|15925302|ref|NP_372836.1| hypothetical protein SAV2312 [Staphylococcus aureus subsp. aureus Mu50] gi|15927892|ref|NP_375425.1| hypothetical protein SA2105 [Staphylococcus aureus subsp. aureus N315] gi|21283961|ref|NP_647049.1| hypothetical protein MW2232 [Staphylococcus aureus subsp. aureus MW2] gi|49484528|ref|YP_041752.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49487095|ref|YP_044316.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57652244|ref|YP_187111.1| hypothetical protein SACOL2304 [Staphylococcus aureus subsp. aureus COL] gi|82751905|ref|YP_417646.1| DeoR family regulatory protein [Staphylococcus aureus RF122] gi|87161961|ref|YP_494896.1| hypothetical protein SAUSA300_2261 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196228|ref|YP_501047.1| hypothetical protein SAOUHSC_02585 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268749|ref|YP_001247692.1| helix-turn-helix, type 11 domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150394816|ref|YP_001317491.1| hypothetical protein SaurJH1_2379 [Staphylococcus aureus subsp. aureus JH1] gi|151222425|ref|YP_001333247.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980627|ref|YP_001442886.1| hypothetical protein SAHV_2296 [Staphylococcus aureus subsp. aureus Mu3] gi|161510507|ref|YP_001576166.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140241|ref|ZP_03564734.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314653|ref|ZP_04837866.1| hypothetical protein SauraC_00470 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253734276|ref|ZP_04868441.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255007089|ref|ZP_05145690.2| hypothetical protein SauraM_11490 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257423795|ref|ZP_05600224.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426475|ref|ZP_05602877.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429114|ref|ZP_05605501.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257431760|ref|ZP_05608123.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257794655|ref|ZP_05643634.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258408741|ref|ZP_05681025.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258422339|ref|ZP_05685251.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258439729|ref|ZP_05690475.1| DeoR family regulatory protein [Staphylococcus aureus A9299] gi|258442715|ref|ZP_05691275.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446586|ref|ZP_05694741.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] gi|258450296|ref|ZP_05698388.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258452646|ref|ZP_05700647.1| helix-turn-helix type 11 domain-containing protein [Staphylococcus aureus A5948] gi|258455331|ref|ZP_05703291.1| DeoR family regulatory protein [Staphylococcus aureus A5937] gi|262048571|ref|ZP_06021455.1| hypothetical protein SAD30_0110 [Staphylococcus aureus D30] gi|262052283|ref|ZP_06024487.1| hypothetical protein SA930_0938 [Staphylococcus aureus 930918-3] gi|282893753|ref|ZP_06301985.1| DeoR family regulatory protein [Staphylococcus aureus A8117] gi|282902219|ref|ZP_06310112.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus C160] gi|282906653|ref|ZP_06314501.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282911873|ref|ZP_06319669.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282917660|ref|ZP_06325411.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus D139] gi|282920892|ref|ZP_06328610.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus C427] gi|282922183|ref|ZP_06329879.1| DeoR family regulatory protein [Staphylococcus aureus A9765] gi|282926861|ref|ZP_06334488.1| DeoR family regulatory protein [Staphylococcus aureus A10102] gi|283767403|ref|ZP_06340318.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus H19] gi|283959093|ref|ZP_06376534.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus A017934/97] gi|284025335|ref|ZP_06379733.1| hypothetical protein Saura13_12137 [Staphylococcus aureus subsp. aureus 132] gi|293497566|ref|ZP_06665420.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus 58-424] gi|294848850|ref|ZP_06789595.1| DeoR family regulatory protein [Staphylococcus aureus A9754] gi|295404993|ref|ZP_06814806.1| DeoR family regulatory protein [Staphylococcus aureus A8819] gi|296275005|ref|ZP_06857512.1| hypothetical protein SauraMR_01635 [Staphylococcus aureus subsp. aureus MR1] gi|297209872|ref|ZP_06926268.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244051|ref|ZP_06927941.1| DeoR family regulatory protein [Staphylococcus aureus A8796] gi|297589616|ref|ZP_06948257.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|300910884|ref|ZP_07128334.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379499|ref|ZP_07362234.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13702112|dbj|BAB43404.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14248086|dbj|BAB58474.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|21205403|dbj|BAB96097.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49242657|emb|CAG41378.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49245538|emb|CAG44015.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286430|gb|AAW38524.1| conserved domain protein [Staphylococcus aureus subsp. aureus COL] gi|82657436|emb|CAI81878.1| probable regulatory protein DeoR family [Staphylococcus aureus RF122] gi|87127935|gb|ABD22449.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203786|gb|ABD31596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741818|gb|ABQ50116.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149947268|gb|ABR53204.1| Helix-turn-helix type 11 domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150375225|dbj|BAF68485.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722762|dbj|BAF79179.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369316|gb|ABX30287.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727692|gb|EES96421.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257272813|gb|EEV04915.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276106|gb|EEV07557.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279595|gb|EEV10182.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282639|gb|EEV12771.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257788627|gb|EEV26967.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840424|gb|EEV64884.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257841770|gb|EEV66207.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257847505|gb|EEV71507.1| DeoR family regulatory protein [Staphylococcus aureus A9299] gi|257851836|gb|EEV75770.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854654|gb|EEV77602.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] gi|257856388|gb|EEV79297.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257859683|gb|EEV82530.1| helix-turn-helix type 11 domain-containing protein [Staphylococcus aureus A5948] gi|257862542|gb|EEV85310.1| DeoR family regulatory protein [Staphylococcus aureus A5937] gi|259159802|gb|EEW44842.1| hypothetical protein SA930_0938 [Staphylococcus aureus 930918-3] gi|259163429|gb|EEW47987.1| hypothetical protein SAD30_0110 [Staphylococcus aureus D30] gi|269941898|emb|CBI50308.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus TW20] gi|282315307|gb|EFB45691.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus C427] gi|282318415|gb|EFB48774.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus D139] gi|282323569|gb|EFB53885.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282329552|gb|EFB59073.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282591312|gb|EFB96385.1| DeoR family regulatory protein [Staphylococcus aureus A10102] gi|282593651|gb|EFB98644.1| DeoR family regulatory protein [Staphylococcus aureus A9765] gi|282596678|gb|EFC01637.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus C160] gi|282763811|gb|EFC03939.1| DeoR family regulatory protein [Staphylococcus aureus A8117] gi|283461282|gb|EFC08366.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus H19] gi|283471532|emb|CAQ50743.1| HTH domain family [Staphylococcus aureus subsp. aureus ST398] gi|283788685|gb|EFC27512.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus A017934/97] gi|285817975|gb|ADC38462.1| DeoR family regulatory protein [Staphylococcus aureus 04-02981] gi|291096497|gb|EFE26755.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus 58-424] gi|294824229|gb|EFG40653.1| DeoR family regulatory protein [Staphylococcus aureus A9754] gi|294969938|gb|EFG45956.1| DeoR family regulatory protein [Staphylococcus aureus A8819] gi|296885545|gb|EFH24482.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178829|gb|EFH38074.1| DeoR family regulatory protein [Staphylococcus aureus A8796] gi|297578127|gb|EFH96840.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887864|gb|EFK83059.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333945|gb|ADL24138.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302752183|gb|ADL66360.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342031|gb|EFM07935.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437274|gb|ADQ76345.1| DeoR family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830658|emb|CBX35500.1| deoR-like helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129602|gb|EFT85593.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315193572|gb|EFU23968.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315198151|gb|EFU28482.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140148|gb|EFW32007.1| DeoR-like helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143418|gb|EFW35199.1| DeoR-like helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440006|gb|EGA97721.1| DeoR family regulatory protein [Staphylococcus aureus O11] gi|323443729|gb|EGB01342.1| DeoR family regulatory protein [Staphylococcus aureus O46] gi|329314996|gb|AEB89409.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329723475|gb|EGG60004.1| HTH domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329730078|gb|EGG66468.1| HTH domain protein [Staphylococcus aureus subsp. aureus 21193] gi|329732090|gb|EGG68445.1| HTH domain protein [Staphylococcus aureus subsp. aureus 21189] Length = 230 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 9 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68 Query: 73 ITI 75 I + Sbjct: 69 IAL 71 >gi|333008132|gb|EGK27607.1| HTH-type transcriptional regulator sgrR domain protein [Shigella flexneri VA-6] Length = 154 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|288554004|ref|YP_003425939.1| hypothetical protein BpOF4_04915 [Bacillus pseudofirmus OF4] gi|288545164|gb|ADC49047.1| hypothetical protein BpOF4_04915 [Bacillus pseudofirmus OF4] Length = 216 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 T T I V++ +S+IAE I+E+ + + LQ L K G++E+ Sbjct: 9 TNSTRQVILVML----KKSQQLTVSEIAEQLEITEMAVRRHLQGLEKEGLIESR 58 >gi|269203942|ref|YP_003283211.1| hypothetical protein SAAV_2374 [Staphylococcus aureus subsp. aureus ED98] gi|262076232|gb|ACY12205.1| hypothetical protein SAAV_2374 [Staphylococcus aureus subsp. aureus ED98] Length = 230 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 9 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68 Query: 73 ITI 75 I + Sbjct: 69 IAL 71 >gi|242398114|ref|YP_002993538.1| Manganese-dependent transcription regulator [Thermococcus sibiricus MM 739] gi|242264507|gb|ACS89189.1| Manganese-dependent transcription regulator [Thermococcus sibiricus MM 739] Length = 141 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M ++KR + + V +Y N R+ I++ I + L+ L + G VE Sbjct: 1 MEISKREEEYLEV-IYLLQKNKGVIRVKDISKRLGIRPPSVVDALKKLSEKGFVE 54 >gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa] Length = 372 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Query: 20 HNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVR---GRRGG---VRLCRPA 70 ++ P + ++ A I ++++++ LV +G T + G+ GG L P Sbjct: 61 NHGRPITLPELVSALHIPPNKSSCIYRLMRMLVHSGFFATTKAVIGQGGGGEAYVLT-PP 119 Query: 71 DQITILD 77 Q+ + D Sbjct: 120 SQLLVKD 126 >gi|242278939|ref|YP_002991068.1| GntR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121833|gb|ACS79529.1| GntR domain protein [Desulfovibrio salexigens DSM 2638] Length = 232 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 17/84 (20%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI------ 73 D +AE +S + + ++ L + +VE+ RG G L I Sbjct: 29 KGDKLPAERTLAERFKVSRSSIREAIKSLAQKNLVESRRG-DGTYILADMDADIFDAFAT 87 Query: 74 -------TILDVV---KATEESFF 87 I D+ + E Sbjct: 88 AFSDQKKRISDIFQFRRVIEPEIA 111 >gi|111022508|ref|YP_705480.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110822038|gb|ABG97322.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 318 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ + +R + Q+A+ +S +++ + L AG+ + T G Sbjct: 1 MRSSRLVEVMLR------LEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESG 54 Query: 60 RRGGVRL 66 GG+RL Sbjct: 55 PGGGIRL 61 >gi|58582387|ref|YP_201403.1| repressor [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576125|ref|YP_001913054.1| repressor [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426981|gb|AAW76018.1| repressor [Xanthomonas oryzae pv. oryzae KACC10331] gi|188520577|gb|ACD58522.1| repressor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 322 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITIL 76 + +AE I L + ++ L G V G GG RL + A + +L Sbjct: 2 LQGGRSWSGVALAERLDIHPRSLRRDIERLRALGYSVHAAPGSGGGDRLGQGAAALPLL 60 >gi|77465407|ref|YP_354910.1| GntR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463809|ref|YP_001044922.1| GntR domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|77389825|gb|ABA81009.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides 2.4.1] gi|126105620|gb|ABN78150.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides ATCC 17029] Length = 239 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+AE +S L L+ L GIV + +G Sbjct: 40 QLAEELGVSRPVLRAALERLRDEGIVHSRQGAG 72 >gi|26251242|ref|NP_757282.1| hypothetical protein c5436 [Escherichia coli CFT073] gi|91214011|ref|YP_543997.1| hypothetical protein UTI89_C5063 [Escherichia coli UTI89] gi|110644795|ref|YP_672525.1| hypothetical protein ECP_4688 [Escherichia coli 536] gi|117626671|ref|YP_859994.1| putative DNA-binding transcriptional regulator [Escherichia coli APEC O1] gi|191170830|ref|ZP_03032382.1| transcriptional regulator, GntR family [Escherichia coli F11] gi|227885157|ref|ZP_04002962.1| GntR family transcriptional regulator [Escherichia coli 83972] gi|300980759|ref|ZP_07175174.1| FCD domain protein [Escherichia coli MS 45-1] gi|300992660|ref|ZP_07179974.1| FCD domain protein [Escherichia coli MS 200-1] gi|301048320|ref|ZP_07195351.1| FCD domain protein [Escherichia coli MS 185-1] gi|306815446|ref|ZP_07449595.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|331650492|ref|ZP_08351564.1| YjjM protein product [Escherichia coli M605] gi|26111675|gb|AAN83856.1|AE016772_34 Hypothetical protein yjjM [Escherichia coli CFT073] gi|91075585|gb|ABE10466.1| hypothetical protein YjjM [Escherichia coli UTI89] gi|110346387|gb|ABG72624.1| hypothetical protein YjjM [Escherichia coli 536] gi|115515795|gb|ABJ03870.1| putative DNA-binding transcriptional regulator [Escherichia coli APEC O1] gi|190909054|gb|EDV68641.1| transcriptional regulator, GntR family [Escherichia coli F11] gi|222036100|emb|CAP78845.1| Uncharacterized protein yjjM [Escherichia coli LF82] gi|227837986|gb|EEJ48452.1| GntR family transcriptional regulator [Escherichia coli 83972] gi|294492771|gb|ADE91527.1| transcriptional regulator, GntR family [Escherichia coli IHE3034] gi|300299828|gb|EFJ56213.1| FCD domain protein [Escherichia coli MS 185-1] gi|300305281|gb|EFJ59801.1| FCD domain protein [Escherichia coli MS 200-1] gi|300409174|gb|EFJ92712.1| FCD domain protein [Escherichia coli MS 45-1] gi|305851108|gb|EFM51563.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|307556591|gb|ADN49366.1| predicted DNA-binding transcriptional regulator [Escherichia coli ABU 83972] gi|307629526|gb|ADN73830.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|312948986|gb|ADR29813.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315293289|gb|EFU52641.1| FCD domain protein [Escherichia coli MS 153-1] gi|320195311|gb|EFW69939.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli WV_060327] gi|323950556|gb|EGB46434.1| FCD domain-containing protein [Escherichia coli H252] gi|324014063|gb|EGB83282.1| FCD domain protein [Escherichia coli MS 60-1] gi|330909803|gb|EGH38313.1| regulator of L-galactonate catabolism YjjM [Escherichia coli AA86] gi|331040886|gb|EGI13044.1| YjjM protein product [Escherichia coli M605] Length = 301 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|332185871|ref|ZP_08387618.1| cyclic nucleotide-binding domain protein [Sphingomonas sp. S17] gi|332014229|gb|EGI56287.1| cyclic nucleotide-binding domain protein [Sphingomonas sp. S17] Length = 263 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 13 VLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVRG 59 ++ + ++QI AEA I+ + L ++L+ L + G++ G Sbjct: 182 AMVDMVRDGAFRFPVTQIDLAEAAGITPVHLNRVLRSLRERGLMTFRSG 230 >gi|307718329|ref|YP_003873861.1| iron-dependent repressor [Spirochaeta thermophila DSM 6192] gi|306532054|gb|ADN01588.1| iron-dependent repressor [Spirochaeta thermophila DSM 6192] Length = 156 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 1 MH---LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT R DY + + A R+ IAEA +S + L L G +E Sbjct: 1 MRQEDLTSRMEDY-LEAIYVLA-KTKRVARVRDIAEALGVSRSTVSNTLHTLSDRGFIE 57 >gi|288870648|ref|ZP_06114837.2| transcriptional regulator, GntR family [Clostridium hathewayi DSM 13479] gi|288866433|gb|EFC98731.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM 13479] Length = 515 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A+ +S + K L L + G V+T+ G+ Sbjct: 311 KQLAKQYDVSISTVRKALSELEQRGFVKTLNGKG 344 >gi|271966707|ref|YP_003340903.1| helix-turn-helix type 11 domain-containing protein [Streptosporangium roseum DSM 43021] gi|270509882|gb|ACZ88160.1| helix-turn-helix type 11 domain protein [Streptosporangium roseum DSM 43021] Length = 327 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++++E +S +++ ++ L AG+ V RG GG RL Sbjct: 17 GRMTATELSEELEVSVRTVYRDVEALSSAGVPVYADRGPAGGYRL 61 >gi|257386174|ref|YP_003175947.1| TrmB family transcriptional regulator [Halomicrobium mukohataei DSM 12286] gi|257168481|gb|ACV46240.1| transcriptional regulator, TrmB [Halomicrobium mukohataei DSM 12286] Length = 249 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R++ Y D RI+++A IS+ ++K L L G V+ Sbjct: 17 FRIVEYM-TETDGSVRITELATELDISKSTVYKHLNTLRSEGYVD 60 >gi|229165866|ref|ZP_04293632.1| hypothetical protein bcere0007_8420 [Bacillus cereus AH621] gi|228617571|gb|EEK74630.1| hypothetical protein bcere0007_8420 [Bacillus cereus AH621] Length = 305 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ +H +IS++AE + E + + AGI ++T +GR GG L Sbjct: 1 MIEL-LHARGKMKISELAELLEVKERMVRIYRDDIEMAGIKIDTTKGRDGGYSLS 54 >gi|257785092|ref|YP_003180309.1| iron (metal) dependent repressor, DtxR family [Atopobium parvulum DSM 20469] gi|257473599|gb|ACV51718.1| iron (metal) dependent repressor, DtxR family [Atopobium parvulum DSM 20469] Length = 142 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 3 LTKRT-DYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LTK DY + + A+ D R IAE +S+ + K L L + +VE R Sbjct: 12 LTKAGEDY-LEAIYRIALEQPDDDKSVRSVDIAECLDVSKASVNKALSQLKEQDMVEQSR 70 Query: 59 GRRGGVRLCRPAD 71 G V L + + Sbjct: 71 --YGRVTLTKEGE 81 >gi|169827861|ref|YP_001698019.1| MarR family transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992349|gb|ACA39889.1| transcriptional regulator, MarR family [Lysinibacillus sphaericus C3-41] Length = 139 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++ + + P+ IA I + + K++ LV+ G VET+ G+ Sbjct: 37 AVLRL-LKDKGPHSFVDIANFMSIEKPSVTKLVHKLVELGYVETMVGK 83 >gi|160915941|ref|ZP_02078149.1| hypothetical protein EUBDOL_01965 [Eubacterium dolichum DSM 3991] gi|158432417|gb|EDP10706.1| hypothetical protein EUBDOL_01965 [Eubacterium dolichum DSM 3991] Length = 306 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 8/57 (14%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKIL---QPLVKAG-IVETVRGRRGGVRL 66 ++ + +Q+A ++ +IL + L +AG ++E+VRG GG L Sbjct: 1 MLQL-LKARGMMSRTQLAAELGCNK---RQILDYKRELEEAGYLIESVRGAHGGYVL 53 >gi|149914510|ref|ZP_01903040.1| transcriptional regulator, GntR family, putative [Roseobacter sp. AzwK-3b] gi|149811303|gb|EDM71138.1| transcriptional regulator, GntR family, putative [Roseobacter sp. AzwK-3b] Length = 249 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++A+ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELADQFEVSRPTVREALKRLAAQSLIRTQRGAFGG 73 >gi|146310586|ref|YP_001175660.1| GntR family transcriptional regulator [Enterobacter sp. 638] gi|145317462|gb|ABP59609.1| transcriptional regulator, GntR family [Enterobacter sp. 638] Length = 485 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A+ P ++A A +S + L L G +E+ G Sbjct: 46 ALRLLILDGRLALDTRLPGE-RELASALNVSRTTVSSALAHLRDEGYLESRHGSG 99 >gi|15888817|ref|NP_354498.1| ArsR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15156575|gb|AAK87283.1| transcriptional regulator, ArsR family [Agrobacterium tumefaciens str. C58] Length = 117 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H ++A + + + L L +AG+V++ R Sbjct: 25 LVQHEPEGIPAGELARLIHVPQNTMSAHLATLARAGLVKSER 66 >gi|56963157|ref|YP_174884.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909396|dbj|BAD63923.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 158 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P ++ +AE +S+ KI L+KAG V Sbjct: 62 EPINVTTLAERINVSKGNTSKITNKLLKAGWVR 94 >gi|320095037|ref|ZP_08026750.1| putative transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978035|gb|EFW09665.1| putative transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 277 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 8/54 (14%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGGVRL 66 + P ++IAE +S + I+ L+ G+V E+ GR G RL Sbjct: 21 LAEGAPLSRAEIAERTGLSPSTVSTIMSDLLAEGLVHDTGDTESTGGR--GRRL 72 >gi|311111898|ref|YP_003983120.1| MarR family transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|310943392|gb|ADP39686.1| MarR family transcriptional regulator [Rothia dentocariosa ATCC 17931] Length = 143 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 + P+ QIAE I+ + K L L G+V +V Sbjct: 47 SKEPSTSPQIAERMGITRQGVQKQLNLLRDEGLVMSV 83 >gi|281603695|gb|ADA76679.1| Transcriptional regulator, GntR family [Shigella flexneri 2002017] gi|313646289|gb|EFS10751.1| bacterial regulatory s, gntR family protein [Shigella flexneri 2a str. 2457T] gi|332748864|gb|EGJ79288.1| transcriptional regulator, GntR family [Shigella flexneri 4343-70] gi|332749117|gb|EGJ79540.1| transcriptional regulator, GntR family [Shigella flexneri K-671] gi|332749699|gb|EGJ80115.1| transcriptional regulator, GntR family [Shigella flexneri 2747-71] gi|332768736|gb|EGJ98915.1| DNA-binding transcriptional regulator [Shigella flexneri 2930-71] gi|333009266|gb|EGK28722.1| transcriptional regulator, GntR family [Shigella flexneri K-218] gi|333011335|gb|EGK30749.1| transcriptional regulator, GntR family [Shigella flexneri K-272] gi|333012231|gb|EGK31613.1| transcriptional regulator, GntR family [Shigella flexneri K-227] gi|333022365|gb|EGK41603.1| transcriptional regulator, GntR family [Shigella flexneri K-304] Length = 304 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSQLRECGVLTQV---GNDYVIARKPD 72 >gi|281207077|gb|EFA81261.1| hypothetical protein PPL_06100 [Polysphondylium pallidum PN500] Length = 348 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGV------RLCRPADQ 72 ++ P I +IA+ I+ FL + ++ L GI + + G G RL + Sbjct: 49 DEGPRSIFEIAQERKINPDFLQRTMRALASQGIFKMVSKDGNDGMYDHTEASRLLEDPNG 108 Query: 73 I 73 I Sbjct: 109 I 109 >gi|253729980|ref|ZP_04864145.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726427|gb|EES95156.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 229 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 9 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68 Query: 73 ITI 75 I + Sbjct: 69 IAL 71 >gi|315497264|ref|YP_004086068.1| regulatory protein arsr [Asticcacaulis excentricus CB 48] gi|315415276|gb|ADU11917.1| regulatory protein ArsR [Asticcacaulis excentricus CB 48] Length = 101 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +IAE +S+ L L L AG+V+ R Sbjct: 21 REREMSAGEIAERVSVSKPTLSGHLATLKAAGLVDVTR 58 >gi|52080985|ref|YP_079776.1| manganese transport transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52786361|ref|YP_092190.1| manganese transport transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319645057|ref|ZP_07999290.1| transcriptional regulator mntR [Bacillus sp. BT1B_CT2] gi|81385089|sp|Q65HG7|MNTR_BACLD RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|52004196|gb|AAU24138.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52348863|gb|AAU41497.1| MntR [Bacillus licheniformis ATCC 14580] gi|317392866|gb|EFV73660.1| transcriptional regulator mntR [Bacillus sp. BT1B_CT2] Length = 142 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|329924711|ref|ZP_08279726.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] gi|328940545|gb|EGG36867.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5] Length = 109 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 1 MHLTKRTDYG----IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT R++ P + +IAE I + K L+ L+ AG+VE Sbjct: 1 MELTTFNALAEPSRFRIVNLL---QKGPLTVGEIAERLDIRQPQASKHLKVLLDAGLVE 56 >gi|318081075|ref|ZP_07988407.1| transcriptional regulator [Streptomyces sp. SA3_actF] Length = 515 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 10 GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 GIRVL+ + P ++A A +S + + L +AG +E+ RG Sbjct: 71 GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 124 >gi|288930582|ref|YP_003434642.1| MarR family transcriptional regulator [Ferroglobus placidus DSM 10642] gi|288892830|gb|ADC64367.1| transcriptional regulator, MarR family [Ferroglobus placidus DSM 10642] Length = 83 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL++ D P +QIA +S + + ++ L + G+VE Sbjct: 18 VLLHL----DKPKTPAQIAGELKLSLPHVSRAIRELEREGLVE 56 >gi|253751377|ref|YP_003024518.1| GntR family transcriptional regulator [Streptococcus suis SC84] gi|253753278|ref|YP_003026418.1| GntR family regulatory protein [Streptococcus suis P1/7] gi|253755891|ref|YP_003029031.1| GntR family transcriptional regulator [Streptococcus suis BM407] gi|251815666|emb|CAZ51254.1| GntR family regulatory protein [Streptococcus suis SC84] gi|251818355|emb|CAZ56179.1| GntR family regulatory protein [Streptococcus suis BM407] gi|251819523|emb|CAR45102.1| GntR family regulatory protein [Streptococcus suis P1/7] gi|319757663|gb|ADV69605.1| transcriptional regulator [Streptococcus suis JS14] Length = 124 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +AE ++ + + L L G V +VR Sbjct: 31 GDKLPTVRDLAEIAGVNPNTVQRALSDLETEGFVYSVR 68 >gi|228991476|ref|ZP_04151428.1| Transcriptional regulator, GntR family with aminotransferase domain [Bacillus pseudomycoides DSM 12442] gi|228768278|gb|EEM16889.1| Transcriptional regulator, GntR family with aminotransferase domain [Bacillus pseudomycoides DSM 12442] Length = 503 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +H D + IA+ IS L + K + L G V+ +G+ Sbjct: 46 LHGDSLPSLRTIADDLKISILTVRKAYKQLETKGYVQIKQGKG 88 >gi|221369407|ref|YP_002520503.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides KD131] gi|221162459|gb|ACM03430.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides KD131] Length = 239 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+AE +S L L+ L GIV + +G Sbjct: 40 QLAEELGVSRPVLRAALERLRDEGIVHSRQGAG 72 >gi|254380839|ref|ZP_04996205.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194339750|gb|EDX20716.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 288 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 9/71 (12%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + + H D P ++ +A SE L ++ L + E VR R RL + Sbjct: 8 AMEHIEAHLDQPLDVADLARIAMTSEYHLRRLFSALAGLPLSEYVRRR----RLTVAGAE 63 Query: 73 I-----TILDV 78 + T+LD+ Sbjct: 64 VLAGERTLLDI 74 >gi|187734623|ref|YP_001876735.1| transcriptional regulator, MarR family [Akkermansia muciniphila ATCC BAA-835] gi|187424675|gb|ACD03954.1| transcriptional regulator, MarR family [Akkermansia muciniphila ATCC BAA-835] Length = 141 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 16/45 (35%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 RVL Y + I +S I+Q L + G V T Sbjct: 37 RVLAYLMSRDGENVSQRDIERHLGVSHTTAKGIVQRLEQKGWVTT 81 >gi|146318195|ref|YP_001197907.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320382|ref|YP_001200093.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145689001|gb|ABP89507.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691188|gb|ABP91693.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|292557996|gb|ADE30997.1| regulatory protein, GntR [Streptococcus suis GZ1] Length = 126 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +AE ++ + + L L G V +VR Sbjct: 33 GDKLPTVRDLAEIAGVNPNTVQRALSDLETEGFVYSVR 70 >gi|125554711|gb|EAZ00317.1| hypothetical protein OsI_22334 [Oryza sativa Indica Group] Length = 372 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 8/52 (15%) Query: 10 GIRVLMYC----AIHN-DYPNRISQIAEACCISE---LFLFKILQPLVKAGI 53 +R AIH IS IA + L +I++ L AGI Sbjct: 33 ALRCAADLGVPSAIHRRGGAATISDIAADTGVHLAKLPHLRRIMRVLTGAGI 84 >gi|118476565|ref|YP_893716.1| hypothetical protein BALH_0837 [Bacillus thuringiensis str. Al Hakam] gi|118415790|gb|ABK84209.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] Length = 315 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGR 60 ++K +R ++ +H + S++A I + + + A I +++ RGR Sbjct: 4 KISK----ALR-MIEL-LHARGKMKSSELAYELKIDARMVRDYKKDIADANIDIKSERGR 57 Query: 61 RGGVRLC 67 GG + Sbjct: 58 YGGYYIS 64 >gi|88856558|ref|ZP_01131215.1| putative transcriptional regulator, AsnC family protein [marine actinobacterium PHSC20C1] gi|88814212|gb|EAR24077.1| putative transcriptional regulator, AsnC family protein [marine actinobacterium PHSC20C1] Length = 94 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 + + D R+ IAEA I+E +I+ LV G + R GRR +L Sbjct: 10 HAHVLLCVSKDSGMRLRDIAEAVGITERAAQRIIAELVADGYLTRERDGRRNRYQL 65 >gi|103487072|ref|YP_616633.1| NAD-dependent epimerase/dehydratase [Sphingopyxis alaskensis RB2256] gi|98977149|gb|ABF53300.1| NAD-dependent epimerase/dehydratase [Sphingopyxis alaskensis RB2256] Length = 310 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 15/82 (18%) Query: 42 FKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKA-TEESFFVAECFASHKIDC 99 +++ L +G V + GG+ A+ I D+V+A E C Sbjct: 15 RQVVGKLAASGYRVRALTRAGGGI--ASAAETIATGDIVEADLEGLVA----------GC 62 Query: 100 PLVGSCGLT-SVLRKALNAFFD 120 V +C +LR+ AF + Sbjct: 63 DAVVNCTARVHILRREDPAFAE 84 >gi|317401203|gb|EFV81848.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 235 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPAD 71 + + +++AE +S + + + L + GIVE +G G L A Sbjct: 30 LPGEKLPTETRLAEQFGVSRTVIREAVSRLRQDGIVEARQGSGVFVTGHDGNRALRIDAA 89 Query: 72 QI----TILDVV---KATEESFF 87 ++ +L +V +A E Sbjct: 90 ELASLDAVLHIVDLRRALETEIA 112 >gi|300710653|ref|YP_003736467.1| conditioned medium-induced protein 2 [Halalkalicoccus jeotgali B3] gi|299124336|gb|ADJ14675.1| conditioned medium-induced protein 2 [Halalkalicoccus jeotgali B3] Length = 217 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L + P +++I+E +S + L+ L +AG+VE+ Sbjct: 17 RILRLLSQK---PCYVTEISEYLGVSPKAVIDHLRKLEEAGLVESR 59 >gi|295680741|ref|YP_003609315.1| MarR family transcriptional regulator with acetyltransferase activity [Burkholderia sp. CCGE1002] gi|295440636|gb|ADG19804.1| transcriptional regulator, MarR family with acetyltransferase activity [Burkholderia sp. CCGE1002] Length = 306 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A D S + ++ +L +++ K G+V R Sbjct: 41 VRILYELAHRAD--LTTSDLCRELGLNAGYLSRVISGFEKKGLVVKSR 86 >gi|300770977|ref|ZP_07080854.1| probable transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762250|gb|EFK59069.1| probable transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 343 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 IRV + ++ P I++++ +S + K + L K GI+ +V G+ G + Sbjct: 31 AIRV-GDLSKNDLLP-SINELSAILDLSRDTIEKGYRYLKKNGIILSVPGK--GYFIA 84 >gi|239626151|ref|ZP_04669182.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520381|gb|EEQ60247.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 326 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 Q+ E +S ++K + L + G +E VR R G RL AD IT Sbjct: 13 GGYLSGQQLCEHLGVSRTAVWKAVNDLREEGYIIEAVRNR--GYRLVEDADVIT 64 >gi|160931270|ref|ZP_02078671.1| hypothetical protein CLOLEP_00107 [Clostridium leptum DSM 753] gi|156869748|gb|EDO63120.1| hypothetical protein CLOLEP_00107 [Clostridium leptum DSM 753] Length = 124 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ + + +A ++ + K L L + G+V + R Sbjct: 21 LRIVSGMYTVGEKLPGVRDLAAQASVNPNTMQKALTELERQGLVYSQR 68 >gi|160880451|ref|YP_001559419.1| GntR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429117|gb|ABX42680.1| transcriptional regulator, GntR family [Clostridium phytofermentans ISDg] Length = 120 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + +A+ I+ + K Q L G++ +V GR Sbjct: 31 ENDQLPSVRALAKELGINPNTVQKAYQELEHNGVIYSVVGRG 72 >gi|116619076|ref|YP_819447.1| transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097923|gb|ABJ63074.1| Transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 142 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 2 HLTKRTDYGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++ T+Y I RVL N + + I ++ +IL+ L K ++E R Sbjct: 26 KISN-TEYSITEARVLFEIREKNGEYI-ANDLVAKLNIDRSYMSRILRKLKKDELIEKTR 83 >gi|302867466|ref|YP_003836103.1| class I and II aminotransferase [Micromonospora aurantiaca ATCC 27029] gi|302570325|gb|ADL46527.1| aminotransferase class I and II [Micromonospora aurantiaca ATCC 27029] Length = 463 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 L A + ++ +S + + + + LV G+VET GR G R A Sbjct: 16 ALAADAAPGTRLPSVRELTAHHHVSPVTVAEATRRLVADGLVETRPGR-GAYVATRRA 72 >gi|260429993|ref|ZP_05783968.1| transcriptional regulator, IclR family [Citreicella sp. SE45] gi|260418916|gb|EEX12171.1| transcriptional regulator, IclR family [Citreicella sp. SE45] Length = 265 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R L + + + S IA A + ++L LV G + + G+ G L + Sbjct: 18 RGLSVLRLVGEGTSSASGIAAALDVPRSTAQRLLASLVAEGCLYRIPGK--GYVLG--PE 73 Query: 72 QITILDVVKATEESFFVA 89 I + +A + +A Sbjct: 74 LIHLGARARAQQPVLALA 91 >gi|256377871|ref|YP_003101531.1| ArsR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922174|gb|ACU37685.1| transcriptional regulator, ArsR family [Actinosynnema mirum DSM 43827] Length = 334 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R + I +Q+A S + + L AG+V+T R Sbjct: 265 RAAVLLEIAGGGGLTTTQLARRLSTSAAAVSRHAAVLRSAGLVDTRR 311 >gi|226362016|ref|YP_002779794.1| ArsR family transcriptional regulator [Rhodococcus opacus B4] gi|226240501|dbj|BAH50849.1| putative ArsR family transcriptional regulator [Rhodococcus opacus B4] Length = 109 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 15/101 (14%) Query: 9 YGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGG 63 Y + R + ++ + S++AE +S L L L G+V GRR Sbjct: 15 YALSDTTRTQILLSLQSGPGYP-SELAEQIGVSRQILSNHLACLRGCGLVVAAPEGRRTR 73 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 L P + +A ++ + A CP S Sbjct: 74 YELADP-------RIGRALDDLIGLV--LAVDPTCCPDAES 105 >gi|196035105|ref|ZP_03102511.1| HTH domain family [Bacillus cereus W] gi|195992169|gb|EDX56131.1| HTH domain family [Bacillus cereus W] Length = 317 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ +H RIS++A+ + E + + AGI +ET +GR GG L Sbjct: 10 MIEL-LHARGKMRISELADLLEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63 >gi|157692610|ref|YP_001487072.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157681368|gb|ABV62512.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 310 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 15/81 (18%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG------VR 65 V++ + + +AE +S +++ + + +AGI V T +G GG R Sbjct: 10 VMLLISKKQ---VQAKDLAELHEVSTRTIYRDIDTINQAGIPVVTTQGAGGGISLVEDYR 66 Query: 66 LCRPA---DQITILDVVKATE 83 L + D I + ++ A E Sbjct: 67 LEKKLFTDDDIEV--ILTALE 85 >gi|71907397|ref|YP_284984.1| GntR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71847018|gb|AAZ46514.1| transcriptional regulator, GntR family [Dechloromonas aromatica RCB] Length = 255 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A +S L + +Q L G+V + +G Sbjct: 30 GDRLPPERELAAELGVSRPSLREAIQKLASKGMVTSRQGGG 70 >gi|21229851|ref|NP_635768.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766728|ref|YP_241490.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188989795|ref|YP_001901805.1| hypothetical protein xccb100_0399 [Xanthomonas campestris pv. campestris str. B100] gi|21111351|gb|AAM39692.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572060|gb|AAY47470.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167731555|emb|CAP49730.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 286 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +T G+ VL A H +SQI+ IS + ++L L G V G +G Sbjct: 42 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAALGYV----GEQG 95 Query: 63 -GVRL 66 G L Sbjct: 96 RGYVL 100 >gi|54023115|ref|YP_117357.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54014623|dbj|BAD55993.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 248 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66 R L +S++A A I ++L LV+AG +E + R R+ Sbjct: 11 RALSVLDCFRGGDSRGVSEVARAQGIPVSTAHRLLTALVRAGFLEKDPASSR-----YRI 65 Query: 67 CRPADQI 73 R + Sbjct: 66 GRALAEY 72 >gi|328950448|ref|YP_004367783.1| transcriptional regulator, Crp/Fnr family [Marinithermus hydrothermalis DSM 14884] gi|328450772|gb|AEB11673.1| transcriptional regulator, Crp/Fnr family [Marinithermus hydrothermalis DSM 14884] Length = 230 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 11/59 (18%) Query: 12 RVLMYCAIHNDYPNRI-----------SQIAEACCISELFLFKILQPLVKAGIVETVRG 59 RVL++ A P +A + + + L L +AG+VE RG Sbjct: 152 RVLVWLAQRFGKPAEAGWYRIESELRQEDLAALAGTTRVTVTHTLSMLRQAGLVEGTRG 210 >gi|320160557|ref|YP_004173781.1| ArsR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319994410|dbj|BAJ63181.1| ArsR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 327 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRG 59 +++L + ++H + + +IAEA + + L AG+++T RG Sbjct: 43 LKILKFLSVHT---STVMEIAEALGLPPSTATLHINILENAGLIKTDLRPATRG 93 >gi|302386572|ref|YP_003822394.1| transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] gi|302197200|gb|ADL04771.1| transcriptional regulator, AraC family [Clostridium saccharolyticum WM1] Length = 308 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 L+K T Y + D R+ Q+AE S +L +I Q Sbjct: 202 KLSKVTQY-------MRENYDQDLRLEQVAERFGFSPTYLSRIFQK 240 >gi|296535355|ref|ZP_06897556.1| GntR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296264323|gb|EFH10747.1| GntR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 478 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV---RLCRPAD 71 + I A +S+ + + + LV +G +E RG G +L RPA Sbjct: 26 LLAPGERLASIRAAAPHHGVSKNTMAEAYERLVASGHLEARRGA--GYFAAQLARPAR 81 >gi|283784271|ref|YP_003364136.1| substrate-binding protein [Citrobacter rodentium ICC168] gi|282947725|emb|CBG87280.1| putative substrate-binding protein [Citrobacter rodentium ICC168] Length = 566 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG + ++ RG+RG +R + + L + + Sbjct: 24 VTVSKLAERCFCSERHIRTLLRQAQEAGWLVWQAQSGRGKRGLLRFLVTPESLRTLMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|253579965|ref|ZP_04857233.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848964|gb|EES76926.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 126 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 1 MHLTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M + K DY + ++ + I IA +S+ + ++ L + G + R Sbjct: 1 MQIRKSAEDY-LEAILVLSKQGGGVRSI-DIATMLGVSKPSVSHAMKLLREDGYIAMDR- 57 Query: 60 RRGGVRLCRPADQITI 75 G V L + I + Sbjct: 58 -YGTVTLLEKGNDIAV 72 >gi|225870381|ref|YP_002746328.1| GntR family regulatory protein [Streptococcus equi subsp. equi 4047] gi|225699785|emb|CAW93586.1| GntR family regulatory protein [Streptococcus equi subsp. equi 4047] Length = 123 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +++ D + + AE ++ + + L L + GIV + R Sbjct: 18 HIMLQIVSQEIKSGDQLPTVREYAEIAGVNPNTMQRALTELDREGIVYSQR 68 >gi|289582779|ref|YP_003481245.1| hypothetical protein Nmag_3131 [Natrialba magadii ATCC 43099] gi|289532332|gb|ADD06683.1| conserved hypothetical protein [Natrialba magadii ATCC 43099] Length = 74 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +Y + D + + A I++ + I++ L K G VE V GR RL Sbjct: 27 LYLHVWPD--STADDLCGALGINKGTVLSIVRTLRKQGYVERVDGR---YRLS 74 >gi|150377174|ref|YP_001313769.1| regulatory protein ArsR [Sinorhizobium medicae WSM419] gi|150031721|gb|ABR63836.1| regulatory protein ArsR [Sinorhizobium medicae WSM419] Length = 116 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 16/42 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H + IA A + + L L +AG+V + R Sbjct: 25 LVRHEPHGLPAGDIARALAVPHNTMSTHLNILARAGLVSSER 66 >gi|84489165|ref|YP_447397.1| phosphate uptake regulator [Methanosphaera stadtmanae DSM 3091] gi|84372484|gb|ABC56754.1| predicted phosphate uptake regulator [Methanosphaera stadtmanae DSM 3091] Length = 301 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 21/34 (61%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P+ +IAE IS ++ K+L+PL+ +++ Sbjct: 20 EAPSTQDEIAEKLNISRRYVTKLLKPLIDENVIK 53 >gi|307705845|ref|ZP_07642685.1| putative transcriptional repressor [Streptococcus mitis SK597] gi|307620596|gb|EFN99692.1| putative transcriptional repressor [Streptococcus mitis SK597] Length = 146 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM ++ S +A +S+ + K ++ LVK G++ET + Sbjct: 42 HILMLL---SEESLTNSDLARRLNVSQAAVTKAIKSLVKEGMLETSK 85 >gi|260463588|ref|ZP_05811787.1| transcriptional regulator, GntR family [Mesorhizobium opportunistum WSM2075] gi|259030679|gb|EEW31956.1| transcriptional regulator, GntR family [Mesorhizobium opportunistum WSM2075] Length = 240 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ A ++A+ IS + ++L L G+V++V G Sbjct: 35 CLLDYA--PGSHLSEEELAQEFEISRTPVRRVLARLESEGLVQSVHGVG 81 >gi|302532661|ref|ZP_07285003.1| GntR family transcriptional regulator [Streptomyces sp. C] gi|302441556|gb|EFL13372.1| GntR family transcriptional regulator [Streptomyces sp. C] Length = 129 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ + +R + A D +Q+A ++ K + L ++G+VE +G Sbjct: 17 QIVQQVEQALR-MGALA-EGDKLPTAAQVAATTKVNPNTTLKAYRELERSGLVEVRQGSG 74 >gi|297202959|ref|ZP_06920356.1| helix-turn-helix domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197711952|gb|EDY55986.1| helix-turn-helix domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 321 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 L++ +++A +SE + L+ L+ +G+ V RGR GG +L Sbjct: 9 ALLFL--QARGRVTAAELAAELEVSERTARRDLEALLASGVPVYAQRGRGGGWQL 61 >gi|254393588|ref|ZP_05008720.1| IclR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294812813|ref|ZP_06771456.1| IclR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441237|ref|ZP_08215971.1| IclR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197707207|gb|EDY53019.1| IclR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294325412|gb|EFG07055.1| IclR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 252 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y +RVL + H +QIA + L +L L++ G VE Sbjct: 16 YVLRVLETVSRHTGG-VTDAQIARETGLPTGHLAPLLAMLLREGYVE 61 >gi|167757736|ref|ZP_02429863.1| hypothetical protein CLOSCI_00067 [Clostridium scindens ATCC 35704] gi|167664618|gb|EDS08748.1| hypothetical protein CLOSCI_00067 [Clostridium scindens ATCC 35704] Length = 122 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L + G+V + R Sbjct: 31 GDKLPSVRDLALEAAVNPNTMQKALSELERNGLVHSQR 68 >gi|149180217|ref|ZP_01858722.1| transcriptional repressor of the xylose operon [Bacillus sp. SG-1] gi|148852409|gb|EDL66554.1| transcriptional repressor of the xylose operon [Bacillus sp. SG-1] Length = 372 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Query: 5 KRTDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----- 54 K+ DY + R L+ A+ N P + ++ +S+ + I+ L+K ++ Sbjct: 2 KKGDYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEEGQ 61 Query: 55 -ETVR--GRRG 62 E+ + GR+G Sbjct: 62 GESTKEGGRKG 72 >gi|254251961|ref|ZP_04945279.1| regulatory proteins [Burkholderia dolosa AUO158] gi|124894570|gb|EAY68450.1| regulatory proteins [Burkholderia dolosa AUO158] Length = 269 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + +A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALAAHSD-PVSLKDLAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|326325976|ref|YP_004250785.1| putative transcriptional regulator IclR [Vibrio nigripulchritudo] gi|323669027|emb|CBJ93069.1| Putative Transcriptional regulator IclR [Vibrio nigripulchritudo] Length = 266 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 ++ + +++I++ L+++ Q L + G + + G + RL Sbjct: 32 MIELLARSREGASLTEISKKLDRPVATLYRVAQVLEQRGYIYS-EGPKSAYRLS 84 >gi|310789817|gb|EFQ25350.1| hypothetical protein GLRG_00494 [Glomerella graminicola M1.001] Length = 344 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%) Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS---IECL 130 TI ++V+ F + + C C L LR+ A DV+ + L Sbjct: 271 TIGEIVR----RFNMVR--ETRTQKCVFDQQCPLRQRLRELDEAVVDVIGSIQGQELSSL 324 Query: 131 VRNR 134 V ++ Sbjct: 325 VTDK 328 >gi|297529556|ref|YP_003670831.1| GntR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252808|gb|ADI26254.1| transcriptional regulator, GntR family [Geobacillus sp. C56-T3] Length = 248 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE IS + + + + LV G + RG+ Sbjct: 33 QPGEMIPSERELAEMYDISRMTVRQAVNNLVNDGYLIRRRGKG 75 >gi|257434720|ref|ZP_05610771.1| helix-turn-helix type 11 domain-containing protein [Staphylococcus aureus subsp. aureus M876] gi|282915166|ref|ZP_06322943.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus M899] gi|282925798|ref|ZP_06333446.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus C101] gi|293511143|ref|ZP_06669840.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] gi|293549750|ref|ZP_06672422.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus M1015] gi|257285316|gb|EEV15432.1| helix-turn-helix type 11 domain-containing protein [Staphylococcus aureus subsp. aureus M876] gi|282312627|gb|EFB43031.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus C101] gi|282320887|gb|EFB51221.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus M899] gi|290918797|gb|EFD95873.1| transcriptional regulator, DeoR family [Staphylococcus aureus subsp. aureus M1015] gi|291466130|gb|EFF08659.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] Length = 230 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 9 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68 Query: 73 ITI 75 I + Sbjct: 69 IAL 71 >gi|291303172|ref|YP_003514450.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572392|gb|ADD45357.1| transcriptional regulator, ArsR family [Stackebrandtia nassauensis DSM 44728] Length = 111 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 A + ++++AE IS+ + K L+ L +AG+V RGR Sbjct: 23 LARLANGDATVTELAEPLTISQPAVSKHLRVLERAGLV--SRGR 64 >gi|256821646|ref|YP_003145609.1| biotin/acetyl-CoA-carboxylase ligase [Kangiella koreensis DSM 16069] gi|256795185|gb|ACV25841.1| biotin/acetyl-CoA-carboxylase ligase [Kangiella koreensis DSM 16069] Length = 325 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 +R L+ + + + ++A+ +S +++K++Q L G+ E+V + G RL + Sbjct: 9 LRQLISL-LKDGNFHSGQKLADELSVSRAYVWKLMQQLEALGLEFESVTRK--GYRLIKS 65 >gi|114705640|ref|ZP_01438543.1| regulatory protein GntR, HTH:GntR, C-terminal [Fulvimarina pelagi HTCC2506] gi|114538486|gb|EAU41607.1| regulatory protein GntR, HTH:GntR, C-terminal [Fulvimarina pelagi HTCC2506] Length = 235 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 8/114 (7%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT-ILDVVKATEESFF 87 +I++ +S + + + L G+V+ +R +RG V D + + DV+ A E Sbjct: 46 EISQRLGMSRTPVHQAIIQLQAEGMVD-LRSKRGVVIRALSPDDMREVYDVIVAVEGMAA 104 Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141 + C L + A L ++ + + Sbjct: 105 FI---IASLPASEREAIC---DALEELNAAMERALEADDLDAWADHDGKFHSML 152 >gi|50955186|ref|YP_062474.1| MarR family transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951668|gb|AAT89369.1| transcriptional regulator, MarR family [Leifsonia xyli subsp. xyli str. CTCB07] Length = 168 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%) Query: 2 HLTKRTDYGIR-------VLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 L++ T +R L Y +++ + +AE IS K+L L +AG Sbjct: 38 RLSRETRSALRVNENDMKALRYIIASMNAEVAVTAGALAEHLHISTASTTKLLDRLERAG 97 Query: 53 IV 54 V Sbjct: 98 HV 99 >gi|56420810|ref|YP_148128.1| GntR family transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56380652|dbj|BAD76560.1| transcriptional regulator (GntR family) [Geobacillus kaustophilus HTA426] Length = 243 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE IS + + + + LV G + RG+ Sbjct: 28 QPGEMIPSERELAEMYDISRMTVRQAVNNLVNDGYLIRRRGKG 70 >gi|302523018|ref|ZP_07275360.1| hypothetical protein SSLG_05787 [Streptomyces sp. SPB78] gi|302431913|gb|EFL03729.1| hypothetical protein SSLG_05787 [Streptomyces sp. SPB78] Length = 696 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 9/66 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRGRRGGVRL 66 R L AI + +++ A +S + L L G+VET G GG Sbjct: 13 RALCVAAIRDLGRATVAETAARARLSRPTVEAALADLTAEGLVETAADQVQHGEAGG--- 69 Query: 67 CRPADQ 72 RPA Q Sbjct: 70 -RPARQ 74 >gi|295428894|ref|ZP_06821518.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|295127243|gb|EFG56885.1| DeoR family regulatory protein [Staphylococcus aureus subsp. aureus EMRSA16] Length = 233 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 12 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 71 Query: 73 ITI 75 I + Sbjct: 72 IAL 74 >gi|239926766|ref|ZP_04683719.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291435090|ref|ZP_06574480.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291337985|gb|EFE64941.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 123 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 50 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLREAGLLTSER 96 >gi|271969602|ref|YP_003343798.1| MarR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512777|gb|ACZ91055.1| putative transcriptional regulator protein, MarR family [Streptosporangium roseum DSM 43021] Length = 163 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VLM + D R++ +A+ +S L +++ L + G+VE Sbjct: 53 VLMQLSESPDRRLRMNDLADRVLLSRSGLTRLIDRLQRDGLVE 95 >gi|298528282|ref|ZP_07015686.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] gi|298511934|gb|EFI35836.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] Length = 109 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Query: 1 MHLTKRTDYGIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKI 44 M + + Y +R + A + + ++AE IS L++I Sbjct: 1 MKVRTYSRYTLRAISLLATLIKTGRLEKRIKTQELAERAGISRDLLYRI 49 >gi|254505180|ref|ZP_05117331.1| transcriptional regulator, AsnC family [Labrenzia alexandrii DFL-11] gi|222441251|gb|EEE47930.1| transcriptional regulator, AsnC family [Labrenzia alexandrii DFL-11] Length = 170 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 12/69 (17%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 + A+ + +++A+ +S L++ L+ L K GI+ G R +I+ Sbjct: 12 ILAALSKEGRLSKAELAKRVNLSPTPLWERLKRLEKHGIIS-------GYR-----AEIS 59 Query: 75 ILDVVKATE 83 + V E Sbjct: 60 LKQVAPHIE 68 >gi|297197101|ref|ZP_06914498.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197714019|gb|EDY58053.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 244 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 R+ +RV + D +AE I E+ + + L+ + + G+++ RGR GG Sbjct: 43 RSRIALRVRLQSVRPGDRLPDAGVLAEELGIGEITVRRALEGMCQDGLLDRRRGRAGG 100 >gi|218961515|ref|YP_001741290.1| hypothetical protein CLOAM1224 [Candidatus Cloacamonas acidaminovorans] gi|167730172|emb|CAO81084.1| hypothetical protein CLOAM1224 [Candidatus Cloacamonas acidaminovorans] Length = 59 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 +++ HN R S++A S + +++ L K G+++ RGG L R Sbjct: 1 MIFLVTHNPK-IRYSELARITGKSVATIKRLISKLKKDGLIKQSGSPRGGEWILTRD 56 >gi|229542596|ref|ZP_04431656.1| transcriptional regulator, GntR family [Bacillus coagulans 36D1] gi|229327016|gb|EEN92691.1| transcriptional regulator, GntR family [Bacillus coagulans 36D1] Length = 121 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 20/42 (47%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + ++++ ++ + ++ Q L + +V+T RG Sbjct: 28 RGEKLPSVRELSKELKVNPNTIQRVYQELEREELVKTQRGMG 69 >gi|77920094|ref|YP_357909.1| GntR transcriptional regulators family [Pelobacter carbinolicus DSM 2380] gi|77546177|gb|ABA89739.1| transcriptional regulator, GntR family [Pelobacter carbinolicus DSM 2380] Length = 243 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +S+ L + L+ L G +E RG GG Sbjct: 37 KDLITQFGVSKHTLREALRSLEAMGFIEIKRGAGGG 72 >gi|21221815|ref|NP_627594.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|4585833|emb|CAB40927.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 368 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 1 MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + +R+ Y A ++A+ ++ + + L L KAG+V T R Sbjct: 286 MRMTALSHPVRMRICRYLARSA---YTTGELAQVHGMTAPEISRHLGVLKKAGLVTTRR- 341 Query: 60 RRGGVRL 66 RG L Sbjct: 342 -RGRYVL 347 >gi|146319279|ref|YP_001198991.1| biotin--protein ligase [Streptococcus suis 05ZYH33] gi|146321483|ref|YP_001201194.1| biotin--protein ligase [Streptococcus suis 98HAH33] gi|223933160|ref|ZP_03625152.1| biotin/acetyl-CoA-carboxylase ligase [Streptococcus suis 89/1591] gi|253752317|ref|YP_003025458.1| BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase] [Streptococcus suis SC84] gi|253754143|ref|YP_003027284.1| BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase] [Streptococcus suis P1/7] gi|330833254|ref|YP_004402079.1| biotin--protein ligase [Streptococcus suis ST3] gi|145690085|gb|ABP90591.1| Biotin-(acetyl-CoA carboxylase) ligase [Streptococcus suis 05ZYH33] gi|145692289|gb|ABP92794.1| Biotin-(acetyl-CoA carboxylase) ligase [Streptococcus suis 98HAH33] gi|223898221|gb|EEF64590.1| biotin/acetyl-CoA-carboxylase ligase [Streptococcus suis 89/1591] gi|251816606|emb|CAZ52244.1| BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase] [Streptococcus suis SC84] gi|251820389|emb|CAR46986.1| BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase] [Streptococcus suis P1/7] gi|292558912|gb|ADE31913.1| Biotin--acetyl-CoA-carboxylase ligase [Streptococcus suis GZ1] gi|319758713|gb|ADV70655.1| biotin--protein ligase [Streptococcus suis JS14] gi|329307477|gb|AEB81893.1| biotin--protein ligase [Streptococcus suis ST3] Length = 318 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 15 MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +Y + + +A+ IS ++K ++ L G+ +E R R G RL Sbjct: 7 IYLLLKEREDYVSGEDLAQELGISRTSIWKAIRQLETHGLTIEAARNR--GYRLAE 60 >gi|300709912|ref|YP_003735726.1| hypothetical protein HacjB3_02705 [Halalkalicoccus jeotgali B3] gi|299123595|gb|ADJ13934.1| hypothetical protein HacjB3_02705 [Halalkalicoccus jeotgali B3] Length = 116 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL + + D + +IA + E + +L L K +V Sbjct: 24 HVLRFLYENRDRAWKAKEIASRTPVPENSIHPVLSRLAKQELVR 67 >gi|294628585|ref|ZP_06707145.1| DeoR-family transcriptional regulator [Streptomyces sp. e14] gi|292831918|gb|EFF90267.1| DeoR-family transcriptional regulator [Streptomyces sp. e14] Length = 345 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 +++AE ++ + + + L G V G GG +L A+ Sbjct: 22 SGAELAERLGVTARTVRRDVDRLRDLGYPVNASPGTGGGYQLGAGAE 68 >gi|293604887|ref|ZP_06687284.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292816715|gb|EFF75799.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 267 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 25/102 (24%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR----------GGVRLCRPADQITILDV 78 ++A +S + + L L + +V+++RG GG+ PA + + Sbjct: 69 ELAALFEVSRPVVRQALDRLREDQLVDSIRGSGTYVRAKPDLMGGMPAVDPAR--RVGHI 126 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120 ++ E + + C + LR++ + D Sbjct: 127 LEGLE--LRMV-----------IEPECAYLAALRRSNDDLRD 155 >gi|253756077|ref|YP_003029217.1| BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase] [Streptococcus suis BM407] gi|251818541|emb|CAZ56372.1| BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase] [Streptococcus suis BM407] Length = 318 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 15 MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +Y + + +A+ IS ++K ++ L G+ +E R R G RL Sbjct: 7 IYLLLKEREDYVSGEDLAQELGISRTSIWKAIRQLETHGLTIEAARNR--GYRLAE 60 >gi|269928845|ref|YP_003321166.1| transcriptional regulator, ArsR family [Sphaerobacter thermophilus DSM 20745] gi|269788202|gb|ACZ40344.1| transcriptional regulator, ArsR family [Sphaerobacter thermophilus DSM 20745] Length = 235 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70 R +M + +++A I+ L LV G++ V+GR RL P Sbjct: 19 RAVMLAELMGGRALTATELAARADIAPSTASAHLARLVDGGLLAVEVQGRHRYYRLAGP- 77 Query: 71 DQITILDVVKATE 83 +V + E Sbjct: 78 ------EVARVIE 84 >gi|91788970|ref|YP_549922.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gi|91698195|gb|ABE45024.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 268 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 17/107 (15%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ-----------ITIL 76 ++I +S + + L L +G+VET G G L P + T+ Sbjct: 56 AEIMARFDVSRTVVRESLSRLQASGLVETRHGI-GTFVL--PPQESGNFRIMAEDFATVA 112 Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 DV+ E + E A+ L ++ AL AF + + Sbjct: 113 DVISVLELRISL-ETEAAGLAAQRRTPENLL--AMQNALRAFRESIN 156 >gi|86358368|ref|YP_470260.1| MarR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282470|gb|ABC91533.1| putative transcriptional regulator protein, MarR family [Rhizobium etli CFN 42] Length = 305 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L H + +A + +L +IL+ G++ET Sbjct: 39 RILFEIGSHAG--VSATALARDLHLDPAYLSRILKRFRAEGLIETS 82 >gi|37525907|ref|NP_929251.1| hypothetical protein plu1987 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785336|emb|CAE14280.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 259 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 5 KRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53 R +Y RVL Y H + ++A+A IS + ++ Q L +G Sbjct: 17 TRAEY--RVLSYLTAHPLLIGQITVRELAKATFISPATIMRLCQKLGFSGY 65 >gi|84494983|ref|ZP_00994102.1| redox-sensing transcriptional repressor Rex [Janibacter sp. HTCC2649] gi|84384476|gb|EAQ00356.1| redox-sensing transcriptional repressor Rex [Janibacter sp. HTCC2649] Length = 230 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 ++ L A ++A A +S L K L L G VRG G + R A Sbjct: 23 LQALTSLAERGISSVSSEELAAAAGVSSAKLRKDLSHLGSYG----VRGV--GYEVDRLA 76 Query: 71 DQIT 74 +I+ Sbjct: 77 YEIS 80 >gi|333028425|ref|ZP_08456489.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332748277|gb|EGJ78718.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 525 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 10 GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 GIRVL+ + P ++A A +S + + L +AG +E+ RG Sbjct: 63 GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 116 >gi|320352519|ref|YP_004193858.1| GntR family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121021|gb|ADW16567.1| transcriptional regulator, GntR family [Desulfobulbus propionicus DSM 2032] Length = 239 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITI 75 D ++AE +S + + L L AG+V + +G GG + L ++ Sbjct: 29 APGDKLPPERELAEMFGVSRPSVREALNILAAAGLVMSYQG--GGTVVLSLVDAGQGGSL 86 Query: 76 LDVV-----KATEESFFVAECFAS 94 +++ +A E V +C S Sbjct: 87 SELIRSQQERALE-VIEVRKCMES 109 >gi|289770899|ref|ZP_06530277.1| transcriptional regulator [Streptomyces lividans TK24] gi|289701098|gb|EFD68527.1| transcriptional regulator [Streptomyces lividans TK24] Length = 368 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 1 MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + +R+ Y A ++A+ ++ + + L L KAG+V T R Sbjct: 286 MRMTALSHPVRMRICRYLARSA---YTTGELAQVHGMTAPEISRHLGVLKKAGLVTTRR- 341 Query: 60 RRGGVRL 66 RG L Sbjct: 342 -RGRYVL 347 >gi|288573434|ref|ZP_06391791.1| putative transcriptional regulator, PaaX family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569175|gb|EFC90732.1| putative transcriptional regulator, PaaX family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 178 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +T +T +R+L+ ++ + ++A+ S + L L +AG++E+ Sbjct: 6 ITSKTR--VRLLLKLFLNPGSSGYLRELADEFGESTNSVRVELNRLAEAGLLESS 58 >gi|317047091|ref|YP_004114739.1| GntR domain-containing protein [Pantoea sp. At-9b] gi|316948708|gb|ADU68183.1| GntR domain protein [Pantoea sp. At-9b] Length = 261 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 Q+A +S L + +Q L+ +G++ + RG GG L +P + Sbjct: 35 RQLAAEFGVSRSSLREAIQQLISSGVLISRRG--GGTWLRQPQE 76 >gi|302555417|ref|ZP_07307759.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473035|gb|EFL36128.1| DeoR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 254 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 L+ A+ + P ++ ++E +S + + L L + G++ V G Sbjct: 7 HQLILRALRSGGPAAVTDLSEQLGVSPATIRRDLVKLEEDGLLTRVHG 54 >gi|256787006|ref|ZP_05525437.1| transcriptional regulator [Streptomyces lividans TK24] Length = 366 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 1 MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 M +T + +R+ Y A ++A+ ++ + + L L KAG+V T R Sbjct: 284 MRMTALSHPVRMRICRYLARSA---YTTGELAQVHGMTAPEISRHLGVLKKAGLVTTRR- 339 Query: 60 RRGGVRL 66 RG L Sbjct: 340 -RGRYVL 345 >gi|256851748|ref|ZP_05557136.1| transcriptional regulatory protein [Lactobacillus jensenii 27-2-CHN] gi|260661535|ref|ZP_05862447.1| transcriptional regulatory protein [Lactobacillus jensenii 115-3-CHN] gi|282933578|ref|ZP_06338948.1| transcriptional regulatory protein [Lactobacillus jensenii 208-1] gi|256615706|gb|EEU20895.1| transcriptional regulatory protein [Lactobacillus jensenii 27-2-CHN] gi|260547592|gb|EEX23570.1| transcriptional regulatory protein [Lactobacillus jensenii 115-3-CHN] gi|281302321|gb|EFA94553.1| transcriptional regulatory protein [Lactobacillus jensenii 208-1] Length = 248 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S + L + L L GI++T++G+ Sbjct: 44 ELAKEMNVSRMTLRQALAFLQDDGIIKTIKGKG 76 >gi|238023873|ref|YP_002908105.1| transcriptional regulator [Burkholderia glumae BGR1] gi|237878538|gb|ACR30870.1| Transcriptional regulator [Burkholderia glumae BGR1] Length = 154 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +TD I A+ D I+++AE+ +SE + L+ L G VE RG Sbjct: 6 KTDRAILA----AVQRDGRIPIARLAESVGLSETPCARRLKRLESEGYVERYRG 55 >gi|297562285|ref|YP_003681259.1| ArsR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846733|gb|ADH68753.1| transcriptional regulator, ArsR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 115 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 R L A + ++++AE IS + + L+ L +AG+V RGR Sbjct: 19 RAL--LARLAEGEATVNELAEPFPISLQAVSRHLKVLERAGLV--SRGR 63 >gi|226312428|ref|YP_002772322.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226095376|dbj|BAH43818.1| putative transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 315 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 + A++ Q+A +S + + +Q L G+ + G GG + Sbjct: 10 IMMAVNKKKSFNAKQLASEFGVSTRTIMRDMQELSALGVPFYSEVGPNGGYK 61 >gi|254503295|ref|ZP_05115446.1| hypothetical protein SADFL11_3334 [Labrenzia alexandrii DFL-11] gi|222439366|gb|EEE46045.1| hypothetical protein SADFL11_3334 [Labrenzia alexandrii DFL-11] Length = 104 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 R+LM + D IAE ++ + L L KAG++ T R GR Sbjct: 14 AFRLLM---MEGDQGLPSGAIAERLDVAPTRMSFHLATLEKAGLLNTRREGRH 63 >gi|156937078|ref|YP_001434874.1| 30S ribosomal protein S19e [Ignicoccus hospitalis KIN4/I] gi|156566062|gb|ABU81467.1| SSU ribosomal protein S19E [Ignicoccus hospitalis KIN4/I] Length = 155 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Query: 39 LFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 + KILQ L KAG+V+ V+G+ G L ++LD Sbjct: 98 SHIRKILQQLEKAGLVKKVKGQ--GRVLTPAGR--SVLD 132 >gi|111021284|ref|YP_704256.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110820814|gb|ABG96098.1| possible transcriptional regulator, ArsR family protein [Rhodococcus jostii RHA1] Length = 109 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 D P +A +S + + LQ L +AG+V Sbjct: 2 DGPLTAGDLAGRFDLSRPAVAEHLQVLRRAGLVR 35 >gi|108801611|ref|YP_641808.1| IclR family transcriptional regulator [Mycobacterium sp. MCS] gi|119870765|ref|YP_940717.1| regulatory proteins, IclR [Mycobacterium sp. KMS] gi|108772030|gb|ABG10752.1| transcriptional regulator, IclR family [Mycobacterium sp. MCS] gi|119696854|gb|ABL93927.1| regulatory protein, IclR [Mycobacterium sp. KMS] Length = 306 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 +R+L + A +S++A +++ I+ L +AG + VR RL Sbjct: 22 VRILDFLADRPQERFGVSELARRVGLTKPTCLGIVTALSEAGYL--VRDPADKTYRLG-- 77 Query: 70 ADQITIL 76 IT+ Sbjct: 78 PSLITLG 84 >gi|88855919|ref|ZP_01130581.1| transcriptional regulator, ArsR family protein [marine actinobacterium PHSC20C1] gi|88814786|gb|EAR24646.1| transcriptional regulator, ArsR family protein [marine actinobacterium PHSC20C1] Length = 188 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 11 IRVLM--YCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVR 65 + VL+ Y A +S+I E +S+ + K L+ L G+V +VR G+ R Sbjct: 45 LTVLLEQYIASDSPSGELSVSEIVEKLDLSQPTVSKHLKVLRDHGLV-SVREDGQHRYYR 103 Query: 66 LCRPADQ 72 L + Sbjct: 104 LDSSPLE 110 >gi|158313414|ref|YP_001505922.1| MarR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108819|gb|ABW11016.1| transcriptional regulator, MarR family [Frankia sp. EAN1pec] Length = 176 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M L + T LM + R+S +A AC +S + +I+ L G+V Sbjct: 44 MSLNEYT-----ALMLLSESPGLRLRMSDLAAACSLSISGMTRIVSRLQAQGLVR 93 >gi|332528446|ref|ZP_08404438.1| helix-turn-helix family protein 13 [Hylemonella gracilis ATCC 19624] gi|332042125|gb|EGI78459.1| helix-turn-helix family protein 13 [Hylemonella gracilis ATCC 19624] Length = 319 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++AE + L + + L + G V G GG L Sbjct: 24 AELAERLAVHPRTLRRDIDRLRQLGYPVHASSGVAGGYAL 63 >gi|328883529|emb|CCA56768.1| putative transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 325 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++AE +S + + L L AGI V GR GG +L Sbjct: 17 GRMSARRLAEELGVSVRTVHRDLGRLHAAGIPVYAEHGRAGGYQL 61 >gi|320178272|gb|EFW53246.1| putative peptide transport system secreted peptide-binding protein [Shigella boydii ATCC 9905] Length = 172 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|262376341|ref|ZP_06069571.1| ArsR family transcriptional regulator [Acinetobacter lwoffii SH145] gi|262308942|gb|EEY90075.1| ArsR family transcriptional regulator [Acinetobacter lwoffii SH145] Length = 106 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 +++L D + +I E+ I + L + L L KA +V T R G++ RL P Sbjct: 31 LKILCVLV---DGEMNVQEIEESTDIHQPTLSQQLTVLRKADMVGTRREGKQIFYRLSDP 87 >gi|241666831|ref|YP_002984915.1| transcriptional regulator, histidine utilization repressor, GntR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862288|gb|ACS59953.1| transcriptional regulator, histidine utilization repressor, GntR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A S + + K+L L KAG++E R ++ G + +P Q IL++ Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAILEI 84 >gi|227537583|ref|ZP_03967632.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242585|gb|EEI92600.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 343 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 IRV + ++ P I++++ +S + K + L K GI+ +V G+ G + Sbjct: 31 AIRV-GDLSKNDLLP-SINELSAILDLSRDTIEKGYRYLKKNGIILSVPGK--GYFIA 84 >gi|239818106|ref|YP_002947016.1| GntR family transcriptional regulator [Variovorax paradoxus S110] gi|239804683|gb|ACS21750.1| GntR domain protein [Variovorax paradoxus S110] Length = 258 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D S +AE +S + + + L G++++ +G Sbjct: 33 EGDRLPTESALAEQFGVSRTVVREAVSRLKSLGLLDSRQGSG 74 >gi|197285951|ref|YP_002151823.1| ArsR family transcriptional regulator [Proteus mirabilis HI4320] gi|194683438|emb|CAR44203.1| ArsR-family transcriptional regulator [Proteus mirabilis HI4320] Length = 107 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + +S++ E+ I + L + L L G+V T R Sbjct: 33 LLLLCQLSQGEKSVSELEESLGIRQPTLSQQLTVLRNEGLVNTRR 77 >gi|170289592|ref|YP_001739830.1| ArsR family transcriptional regulator [Thermotoga sp. RQ2] gi|69953824|gb|AAZ04320.1| unknown [Thermotoga sp. RQ2] gi|170177095|gb|ACB10147.1| transcriptional regulator, ArsR family [Thermotoga sp. RQ2] Length = 184 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ +T + +LM D S++AE I+ ++ L +VKAGI++ ++ G Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVLKTPEG 68 >gi|24379621|ref|NP_721576.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290580379|ref|YP_003484771.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24377572|gb|AAN58882.1|AE014956_3 putative transcriptional regulator [Streptococcus mutans UA159] gi|254997278|dbj|BAH87879.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 123 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +AE ++ + + L + G+V +VR Sbjct: 31 GQQLATVRDLAEEAGVNPNTMQRAFTSLEQEGMVFSVR 68 >gi|318059618|ref|ZP_07978341.1| ROK family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318075603|ref|ZP_07982935.1| ROK family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 688 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 9/66 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRGRRGGVRL 66 R L AI + +++ A +S + L L G+VET G GG Sbjct: 5 RALCVAAIRDLGRATVAETAARARLSRPTVEAALADLTAEGLVETAADQVQHGEAGG--- 61 Query: 67 CRPADQ 72 RPA Q Sbjct: 62 -RPARQ 66 >gi|319781800|ref|YP_004141276.1| ArsR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167688|gb|ADV11226.1| regulatory protein ArsR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 114 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + ++ Y A + + IAE +S+ L + L L +V+T R Sbjct: 26 LLIMSYLA---EGEMSVGAIAEKVMLSQSALSQHLAKLRALDLVDTRR 70 >gi|254460954|ref|ZP_05074370.1| regulatory protein GntR, HTH [Rhodobacterales bacterium HTCC2083] gi|206677543|gb|EDZ42030.1| regulatory protein GntR, HTH [Rhodobacteraceae bacterium HTCC2083] Length = 242 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 27/142 (19%) Query: 1 MHL--TKRTDY------GIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 M + + + D IR L+ ++ ++++E +S + + L+ Sbjct: 1 MKIDPSSKADLSAQIAKAIRDAIVSGALIV----DERLPSEAELSEQFEVSRATVREALK 56 Query: 47 PLVKAGIVETVRGRRGGV---RLC-RPA--DQITILDVVKATEESFFVAEC---FASHKI 97 L ++ T RG GG RL + A QIT ++ + F C FA Sbjct: 57 RLAAQSLIRTQRGAFGGAFVNRLSFKEAYGQQITTSTLLLSMNAVSFEIACEARFALESA 116 Query: 98 DCPLVGSCGLTSVLRKALNAFF 119 PL + L F Sbjct: 117 CAPLAATRRTADHLATMRAEIF 138 >gi|170289854|ref|YP_001736670.1| ArsR family transcriptional regulator [Candidatus Korarchaeum cryptofilum OPF8] gi|170173934|gb|ACB06987.1| transcriptional regulator, ArsR family [Candidatus Korarchaeum cryptofilum OPF8] Length = 173 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 P +S+IAE IS+ K ++ L +GI+E + Sbjct: 25 EPLTLSEIAERLGISQPAALKHIRELESSGIIEAHK 60 >gi|209546272|ref|YP_002278162.1| ArsR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539129|gb|ACI59062.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 307 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 21/70 (30%) Query: 10 GIRVL----------MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 IR L + CA P I+ IA+A + + + +Q L +AG+VE+ Sbjct: 16 AIRALSAPARVEMLKLLCAK---GPTNINDIAQALSLPQSTVATGIQILEEAGLVES--- 69 Query: 60 RRGGVRLCRP 69 RL + Sbjct: 70 -----RLAKA 74 >gi|149200786|ref|ZP_01877761.1| transcriptional regulator, GntR family protein [Roseovarius sp. TM1035] gi|149145119|gb|EDM33145.1| transcriptional regulator, GntR family protein [Roseovarius sp. TM1035] Length = 239 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D + +A ++ + + L L +AG++ RG G + + I V+ Sbjct: 29 GDKLPTEAVLATRFGVNRHTVRRALAVLAEAGVIFARRGA--GAFVAHRPTEYPIGRRVR 86 >gi|146284539|ref|YP_001165492.1| GntR family transcriptional regulator [Enterobacter sp. 638] gi|145320672|gb|ABP62818.1| transcriptional regulator, GntR family [Enterobacter sp. 638] Length = 432 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 11 IRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 IR ++ + + ++A I+ + + L AG V + RGR G Sbjct: 15 IRAMIQAGELVPGMMLPTLRELAGELGINRNTVALAYKRLTDAGFVIS-RGRNG 67 >gi|150397677|ref|YP_001328144.1| GntR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029192|gb|ABR61309.1| transcriptional regulator, GntR family [Sinorhizobium medicae WSM419] Length = 244 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%) Query: 11 IRVLMYC-AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R + A S++ +S + + LQ L ++ T RGR G L R Sbjct: 19 LRAAIESGAYPPGSKLPTESELCHQYDVSRSVVRQALQSLAHDNLIGTERGR-GAFVLDR 77 Query: 69 P 69 Sbjct: 78 K 78 >gi|55376536|ref|YP_134388.1| hypothetical protein pNG6142 [Haloarcula marismortui ATCC 43049] gi|55229261|gb|AAV44682.1| unknown [Haloarcula marismortui ATCC 43049] Length = 316 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 A+ +++A S L+ +L L+ AG++ RG Sbjct: 12 ALSTGREATPAELAAETGYSRDHLYDVLNELLAAGLLTETRG 53 >gi|52080537|ref|YP_079328.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785916|ref|YP_091745.1| hypothetical protein BLi02167 [Bacillus licheniformis ATCC 14580] gi|319645501|ref|ZP_07999733.1| hypothetical protein HMPREF1012_00766 [Bacillus sp. BT1B_CT2] gi|52003748|gb|AAU23690.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52348418|gb|AAU41052.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317392387|gb|EFV73182.1| hypothetical protein HMPREF1012_00766 [Bacillus sp. BT1B_CT2] Length = 157 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + LM+ N S+I+ A ++ F+ ++L + K G+V Sbjct: 41 KALMFLNEANGEGKMASEISRALHVTSPFVTQLLNRMEKKGLV 83 >gi|24375965|ref|NP_720008.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350955|gb|AAN57452.1|AE015880_11 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 220 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y + S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMANPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|307546151|ref|YP_003898630.1| manganese transport regulator MntR [Halomonas elongata DSM 2581] gi|307218175|emb|CBV43445.1| manganese transport regulator MntR [Halomonas elongata DSM 2581] Length = 136 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RG 59 A+H + R S +AE +S + K++ L + G+V RG Sbjct: 34 ALHGEA--RASDLAECFGVSTAAVSKVIARLKRDGLVIARPYRG 75 >gi|297184421|gb|ADI20537.1| transcriptional regulators [uncultured alpha proteobacterium EB080_L58F04] Length = 233 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 3 LTKRTDYG-IR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 LT+RT Y +R ++ R S++ + +S + + + L + G+VE Sbjct: 19 LTQRT-YSTLRDAIINLQFKPGELIRKSELCASLGVSRSPISEAISRLAQEGLVEVF--P 75 Query: 61 RGGVRLCR-PADQITILDVVK-ATE 83 + G + R D+I ++ A E Sbjct: 76 QAGTYVARFSMDEIREGAFIREALE 100 >gi|300789672|ref|YP_003769963.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799186|gb|ADJ49561.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 328 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILD 77 + P +++A S + L L +AG+V VR G L R A +T+L+ Sbjct: 269 EPPRSTTELAARTGYSPGTVSYHLSALHRAGLVSKVR--DGRYVLYRRTAQAVTLLE 323 >gi|296268424|ref|YP_003651056.1| ArsR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091211|gb|ADG87163.1| transcriptional regulator, ArsR family [Thermobispora bispora DSM 43833] Length = 123 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + A ++ + L+ L +AG++E R Sbjct: 44 LRLLSLIASHEGGEVCVCDLTVAFDVTPPTISHHLKVLRQAGLIEGDR 91 >gi|221633153|ref|YP_002522378.1| regulatory protein, MarR [Thermomicrobium roseum DSM 5159] gi|221155466|gb|ACM04593.1| regulatory protein, MarR [Thermomicrobium roseum DSM 5159] Length = 154 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 ++VL A P +S++AE IS +++ L + G+V Sbjct: 40 LKVLFALACRG--PLTVSEVAERLRISPPTASHLIERLTQLGLV 81 >gi|154504602|ref|ZP_02041340.1| hypothetical protein RUMGNA_02108 [Ruminococcus gnavus ATCC 29149] gi|153795084|gb|EDN77504.1| hypothetical protein RUMGNA_02108 [Ruminococcus gnavus ATCC 29149] Length = 123 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L ++G+V + R Sbjct: 31 GDRLPSVRDLAVEAAVNPNTMQKALSELERSGLVYSQR 68 >gi|152968253|ref|YP_001364037.1| TrmB family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362770|gb|ABS05773.1| transcriptional regulator, TrmB [Kineococcus radiotolerans SRS30216] Length = 118 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 RVL+ YP +++AE +S L L L G+V +V Sbjct: 28 RVLLALREAPGYP---AELAEQLGVSRQSLSNHLSCLRACGLVASV 70 >gi|221069175|ref|ZP_03545280.1| transcriptional regulator, GntR family [Comamonas testosteroni KF-1] gi|220714198|gb|EED69566.1| transcriptional regulator, GntR family [Comamonas testosteroni KF-1] Length = 225 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + ++EA IS L ++ + L K G++ V GV + +I+D+ Sbjct: 27 LSPGQRLSEAALSEALDISRNTLREVFRMLTKEGLL--VHEPNKGVSVAV-PSMASIIDI 83 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + + EC A L + + L + A Sbjct: 84 YRV----RRMIECQA-------LAQAYPMHPALTRMREAVE 113 >gi|16263896|ref|NP_436688.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|307308108|ref|ZP_07587823.1| GntR domain protein [Sinorhizobium meliloti BL225C] gi|307316968|ref|ZP_07596410.1| GntR domain protein [Sinorhizobium meliloti AK83] gi|15140020|emb|CAC48548.1| probable transcriptional regulator [Sinorhizobium meliloti 1021] gi|306897590|gb|EFN28334.1| GntR domain protein [Sinorhizobium meliloti AK83] gi|306901311|gb|EFN31916.1| GntR domain protein [Sinorhizobium meliloti BL225C] Length = 233 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A D ++A +S + + L+ L G++ + RG Sbjct: 28 AYKPDERLPTEHELATEFEVSRPIVREALKRLRDQGLIYSRRGAG 72 >gi|314935781|ref|ZP_07843133.1| transcriptional regulator, DeoR family [Staphylococcus hominis subsp. hominis C80] gi|313656346|gb|EFS20086.1| transcriptional regulator, DeoR family [Staphylococcus hominis subsp. hominis C80] Length = 234 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 +M I + S +A+ +S + + + L G+ + +GR GG Sbjct: 13 MMSL-IQQGHKINASDLAKQFNVSTRTITRDINDLESKGVHIYAHKGRHGGY 63 >gi|299529516|ref|ZP_07042953.1| transcriptional regulator, GntR family protein [Comamonas testosteroni S44] gi|298722379|gb|EFI63299.1| transcriptional regulator, GntR family protein [Comamonas testosteroni S44] Length = 225 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + ++EA IS L ++ + L K G++ V GV + +I+D+ Sbjct: 27 LSPGQRLSEAALSEALDISRNTLREVFRMLTKEGLL--VHEPNKGVSVAV-PSMASIIDI 83 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + + EC A L + + L + A Sbjct: 84 YRV----RRMIECQA-------LAQAYPMHPALTRMREAVE 113 >gi|298291274|ref|YP_003693213.1| ArsR family transcriptional regulator [Starkeya novella DSM 506] gi|296927785|gb|ADH88594.1| transcriptional regulator, ArsR family [Starkeya novella DSM 506] Length = 290 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ A + IA + + L L +AG+V + R Sbjct: 26 AFRLLLRYAPYG---LAAGDIARLLAVPHNTMSTHLAQLERAGLVTSRR 71 >gi|256810409|ref|YP_003127778.1| TrmB family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256793609|gb|ACV24278.1| transcriptional regulator, TrmB [Methanocaldococcus fervens AG86] Length = 94 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 N P I ++A+ +S ++ L+ L AG+VE+ Sbjct: 26 NKQPKNIYELAKELNLSRPVVYAHLRKLENAGLVES 61 >gi|228474841|ref|ZP_04059572.1| HTH domain protein [Staphylococcus hominis SK119] gi|228271504|gb|EEK12872.1| HTH domain protein [Staphylococcus hominis SK119] Length = 231 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 +M I + S +A+ +S + + + L G+ + +GR GG Sbjct: 10 MMSL-IQQGHKINASDLAKQFNVSTRTITRDINDLESKGVHIYAHKGRHGGY 60 >gi|296139661|ref|YP_003646904.1| ArsR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027795|gb|ADG78565.1| transcriptional regulator, ArsR family [Tsukamurella paurometabola DSM 20162] Length = 126 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++ P ++A + IS + + L+ L +AG+V RG Sbjct: 16 LSLLRAAPRTAGEVAASFEISRPAISRHLRVLREAGLVAAERG 58 >gi|148556977|ref|YP_001264559.1| MarR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502167|gb|ABQ70421.1| transcriptional regulator, MarR family [Sphingomonas wittichii RW1] Length = 175 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 R L + A + D +S++ I++ L ++L L + G++ET GR Sbjct: 62 RSLYFIARNPD--ITVSELLRLLGITKQSLGRVLNELAERGLIETRMGR 108 >gi|161525311|ref|YP_001580323.1| GntR domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189349952|ref|YP_001945580.1| GntR family transcriptional repressor for pyruvate dehydrogenase complex [Burkholderia multivorans ATCC 17616] gi|221201383|ref|ZP_03574422.1| GntR domain protein [Burkholderia multivorans CGD2M] gi|221208863|ref|ZP_03581861.1| GntR domain protein [Burkholderia multivorans CGD2] gi|221214056|ref|ZP_03587029.1| GntR domain protein [Burkholderia multivorans CGD1] gi|160342740|gb|ABX15826.1| GntR domain protein [Burkholderia multivorans ATCC 17616] gi|189333974|dbj|BAG43044.1| GntR family transcriptional repressor for pyruvate dehydrogenase complex [Burkholderia multivorans ATCC 17616] gi|221166233|gb|EED98706.1| GntR domain protein [Burkholderia multivorans CGD1] gi|221171319|gb|EEE03768.1| GntR domain protein [Burkholderia multivorans CGD2] gi|221178651|gb|EEE11059.1| GntR domain protein [Burkholderia multivorans CGD2M] Length = 253 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70 D +++ A +S + + + + +G++ET G G L Sbjct: 35 RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRQALGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRATDAD----LAALRRALDAI 139 >gi|13959804|gb|AAK49001.1| USC3-2p [Myxococcus xanthus] Length = 208 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +R LM P RI +A AC +S L + + +V+ G + G G Sbjct: 42 LRTLM-----AQGPCRIKDLALACGLSHSALSQTVAAMVRDGWLHAANGDDG 88 >gi|219668598|ref|YP_002459033.1| GntR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538858|gb|ACL20597.1| transcriptional regulator, GntR family [Desulfitobacterium hafniense DCB-2] Length = 241 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +Q+ E IS++ + L+ L + G++E+ RG+ Sbjct: 30 GDALPSETQLGEQYGISKMTVRNGLRLLAQEGLIESFRGKG 70 >gi|326202904|ref|ZP_08192771.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium papyrosolvens DSM 2782] gi|325986981|gb|EGD47810.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium papyrosolvens DSM 2782] Length = 326 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD-----QI 73 D I++A +S ++K + L K G +E+ + G R D +I Sbjct: 11 EEDKYISGEDISKALNVSRTAVWKHINELRKDGYTIESS--SKKGYRFLEAPDIPDKREI 68 Query: 74 TI 75 +I Sbjct: 69 SI 70 >gi|318061320|ref|ZP_07980041.1| transcriptional regulator [Streptomyces sp. SA3_actG] Length = 533 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 10 GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 GIRVL+ + P ++A A +S + + L +AG +E+ RG Sbjct: 71 GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 124 >gi|302337932|ref|YP_003803138.1| biotin/acetyl-CoA-carboxylase ligase [Spirochaeta smaragdinae DSM 11293] gi|301635117|gb|ADK80544.1| biotin/acetyl-CoA-carboxylase ligase [Spirochaeta smaragdinae DSM 11293] Length = 312 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 12/74 (16%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVR 58 M + R +++ + + +A +S + ++K +Q L + G V + R Sbjct: 1 MKVNTS-----RNILHM-LGSRECISGETMATHLGLSRVAVWKQIQQLRERGYVIESSSR 54 Query: 59 GRRGGVRLCRPADQ 72 G RL + ++ Sbjct: 55 G----YRLIKLPEE 64 >gi|298529596|ref|ZP_07016999.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511032|gb|EFI34935.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 362 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A+H P I +A IS + +++ L K+G+ +++ G Sbjct: 142 DLAVHGFSPPEIFYLAGRENIS---VSRVISRLKKSGL-DSIPGGG 183 >gi|284044263|ref|YP_003394603.1| IclR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948484|gb|ADB51228.1| transcriptional regulator, IclR family [Conexibacter woesei DSM 14684] Length = 278 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 +RVL A + ++ +A + + + ++L +++ G VE R G RL Sbjct: 29 ALRVLRIMAAPERSEWSLFELCQAANLPKATVHRLLGTMIEEGFVEHARNP-GYYRLGLE 87 Query: 70 AD 71 A Sbjct: 88 AA 89 >gi|227500778|ref|ZP_03930827.1| GntR family transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217083|gb|EEI82441.1| GntR family transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 120 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + +A+ ++ + + L L + G+ E+ R Sbjct: 29 GEKILPVRDLAKTYEVNPNTVQRALSELEREGLCESRR 66 >gi|297205369|ref|ZP_06922765.1| hypothetical protein HMPREF0526_10397 [Lactobacillus jensenii JV-V16] gi|297149947|gb|EFH30244.1| hypothetical protein HMPREF0526_10397 [Lactobacillus jensenii JV-V16] Length = 97 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S + L + L L GI++T++G+ Sbjct: 44 ELAKEMNVSRMTLRQALAFLQDDGIIKTIKGKG 76 >gi|149913485|ref|ZP_01902018.1| transcriptional regulator, GntR family protein [Roseobacter sp. AzwK-3b] gi|149812605|gb|EDM72434.1| transcriptional regulator, GntR family protein [Roseobacter sp. AzwK-3b] Length = 240 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 11/74 (14%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + Y D + ++ ++ + + L L + G++ T +G GV + Sbjct: 25 SRYA---------PGDKLPTEAALSTRFGVNRHTVRRALAQLAEDGMIHTRQGA--GVFV 73 Query: 67 CRPADQITILDVVK 80 I V+ Sbjct: 74 THKPTDYPIGRRVR 87 >gi|148554798|ref|YP_001262380.1| MarR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499988|gb|ABQ68242.1| transcriptional regulator, MarR family [Sphingomonas wittichii RW1] Length = 154 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 RVLM P I+Q+A + I+ + +I++ + +AG++++ Sbjct: 52 RVLMVLGEKAPRP--IAQVARSTVINISTMARIVERMTRAGLIDSR 95 >gi|115372893|ref|ZP_01460198.1| transcriptional regulator, MarR family [Stigmatella aurantiaca DW4/3-1] gi|310818527|ref|YP_003950885.1| MarR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115370160|gb|EAU69090.1| transcriptional regulator, MarR family [Stigmatella aurantiaca DW4/3-1] gi|309391599|gb|ADO69058.1| Transcriptional regulator, MarR family [Stigmatella aurantiaca DW4/3-1] Length = 166 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 28/114 (24%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + L++ D P + ++A I+E + ++ L + G ++ R Sbjct: 50 VHALLWLG--QDGPLTMGELARRLGITEKTVTGVVDRLEREGHLQRER------------ 95 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 E V C + L ++ +AL+ ++L Sbjct: 96 -----------VHEDRRVVRCRLTGSGQQTFQ---QLHQLVNQALSQLLEMLDG 135 >gi|119720166|ref|YP_920661.1| hypothetical protein Tpen_1260 [Thermofilum pendens Hrk 5] gi|119525286|gb|ABL78658.1| transcriptional regulator, AsnC family [Thermofilum pendens Hrk 5] Length = 274 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 2 HLTKRTDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 L +R + G+ ++ + + +I EA I L + ++ L KAG + Sbjct: 202 RLKRRGEGGVVLEEDEAILDFLRRSGGRAYLKEIREALGIPSTTLLRRVRRLEKAGYLRL 261 Query: 57 VRGRRG 62 + G Sbjct: 262 EKTPGG 267 >gi|78062855|ref|YP_372763.1| IclR family transcriptional regulator [Burkholderia sp. 383] gi|77970740|gb|ABB12119.1| transcriptional regulator, IclR family [Burkholderia sp. 383] Length = 274 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 11 IRVLMYC-AIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVR 65 +R L A+ + P +SQ+A I + L ++++ L G V RG G+ Sbjct: 20 LRALAVLEALASAGQPVTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIA 79 Query: 66 LCRPADQ 72 L A Q Sbjct: 80 LGPRAAQ 86 >gi|26246456|ref|NP_752495.1| hypothetical protein c0561 [Escherichia coli CFT073] gi|26106854|gb|AAN79039.1|AE016756_222 Hypothetical protein ybaE [Escherichia coli CFT073] Length = 571 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 +S++AE C SE + +L+ AG +E + RG+RG +R + + + + Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQXAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 88 Query: 81 ATE 83 A E Sbjct: 89 ALE 91 >gi|88800142|ref|ZP_01115711.1| glycerol-3-phosphate regulon repressor [Reinekea sp. MED297] gi|88777123|gb|EAR08329.1| glycerol-3-phosphate regulon repressor [Reinekea sp. MED297] Length = 256 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L ++ +A+ +S+ + K + L + G+V R GGV L P Sbjct: 10 RILAQL--QTTDLLQVDALADQFQVSQQTVRKDINQLSEQGLV---RRVHGGVSLPAPLH 64 Query: 72 QITI 75 + Sbjct: 65 NASF 68 >gi|331004065|ref|ZP_08327547.1| hypothetical protein HMPREF0491_02409 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411651|gb|EGG91059.1| hypothetical protein HMPREF0491_02409 [Lachnospiraceae oral taxon 107 str. F0167] Length = 251 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + T+ +++L A N+ + +I E I + IL LV G++E G Sbjct: 1 MKINRTTERSVQILQIIAKSNEG-LEMDEICERLSIPRTSCYDILVTLVHLGMLEVNTGV 59 Query: 61 RGGVRLCRPADQI 73 + ++ A +I Sbjct: 60 KRSYKIGLNAYRI 72 >gi|330012911|ref|ZP_08307525.1| hypothetical protein HMPREF9538_05236 [Klebsiella sp. MS 92-3] gi|328533650|gb|EGF60357.1| hypothetical protein HMPREF9538_05236 [Klebsiella sp. MS 92-3] Length = 255 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 20/40 (50%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + + I + +S +++++L L + G + +G+ Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243 >gi|296166318|ref|ZP_06848755.1| ArsR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898327|gb|EFG77896.1| ArsR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 161 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68 +R+ + + + + ++ +A + + + + L+ L AG+V R GR RL Sbjct: 85 VRIAIVLQLRESHRC-VHELVDALGVPQPLVSQHLRILKAAGVVAGERSGREVLYRLADH 143 Query: 69 PADQITILDVVKATEES 85 I + V A+E++ Sbjct: 144 HLAHIVVDAVAHASEDT 160 >gi|288936713|ref|YP_003440772.1| Crp/Fnr family transcriptional regulator [Klebsiella variicola At-22] gi|290510231|ref|ZP_06549601.1| hypothetical protein HMPREF0485_02001 [Klebsiella sp. 1_1_55] gi|288891422|gb|ADC59740.1| putative transcriptional regulator, Crp/Fnr family [Klebsiella variicola At-22] gi|289776947|gb|EFD84945.1| hypothetical protein HMPREF0485_02001 [Klebsiella sp. 1_1_55] Length = 255 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 20/40 (50%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + + I + +S +++++L L + G + +G+ Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243 >gi|260888615|ref|ZP_05899878.1| zinc ABC transporter, permease protein [Selenomonas sputigena ATCC 35185] gi|330838096|ref|YP_004412676.1| ABC-type transporter, integral membrane subunit [Selenomonas sputigena ATCC 35185] gi|260861648|gb|EEX76148.1| zinc ABC transporter, permease protein [Selenomonas sputigena ATCC 35185] gi|329745860|gb|AEB99216.1| ABC-type transporter, integral membrane subunit [Selenomonas sputigena ATCC 35185] Length = 366 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%) Query: 14 LMYCAIHN-----DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +++ H N + IAE SE + ++ + L +AGIV R GG L Sbjct: 295 IIHLGTHTAENLYSEENAVRDIAEHLRWSEREMRRVSERLKEAGIVR----RSGGYYL 348 >gi|281413172|ref|YP_003347251.1| ArsR family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|281374275|gb|ADA67837.1| transcriptional regulator, ArsR family [Thermotoga naphthophila RKU-10] Length = 184 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ +T + +LM D S++AE I+ ++ L +VKAGI++ ++ G Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVLKTPEG 68 >gi|253574842|ref|ZP_04852182.1| regulatory protein MarR [Paenibacillus sp. oral taxon 786 str. D14] gi|251845888|gb|EES73896.1| regulatory protein MarR [Paenibacillus sp. oral taxon 786 str. D14] Length = 145 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++Y +H + +SQIAE+ I+ + I LV G V RG Sbjct: 41 MLYM-LHTSGTHTVSQIAESLGITSAAITGITDRLVTEGYVNRERG 85 >gi|238893533|ref|YP_002918267.1| hypothetical protein KP1_1436 [Klebsiella pneumoniae NTUH-K2044] gi|238545849|dbj|BAH62200.1| hypothetical protein KP1_1436 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 255 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 20/40 (50%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + + I + +S +++++L L + G + +G+ Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243 >gi|222083234|ref|YP_002542637.1| transcriptional regulator GntR family [Agrobacterium vitis S4] gi|221738614|gb|ACM39452.1| transcriptional regulator GntR family [Agrobacterium vitis S4] Length = 293 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 12/78 (15%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 ++YG D AE I+ + + + L+KAG++E+ GG Sbjct: 68 TSSEYG---------PGDRIPSERDFAETLGINRATVRRAVANLIKAGLLESN--GTGGT 116 Query: 65 RLCRPADQITILDVVKAT 82 R+ A LD+ ++ Sbjct: 117 RVA-AAKVARKLDIYRSI 133 >gi|254488230|ref|ZP_05101435.1| regulatory protein GntR, HTH [Roseobacter sp. GAI101] gi|214045099|gb|EEB85737.1| regulatory protein GntR, HTH [Roseobacter sp. GAI101] Length = 251 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 9/108 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74 ++ ++++ +S + + L+ L ++ T RG GG + R A QIT Sbjct: 36 DERLPSEAELSLRFDVSRATVREALKRLAAQSLIRTQRGATGGAFVNRISFEAAQAQQIT 95 Query: 75 ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119 ++ + + F C A + ++ C PL L + Sbjct: 96 TSTLLLSMNDVSFETACEARYALERACAPLSADRRHLHHLTVMRDEIE 143 >gi|162286808|emb|CAP17166.1| hypothetical protein [Streptococcus pneumoniae] Length = 172 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 9/106 (8%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR----PADQITILDVV 79 +IA+ IS +++ ++ L +AGI + + G+ G L P T +V Sbjct: 2 IPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFLLPPVMFTAAEV- 58 Query: 80 KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124 A + C + + S+L+ + L Sbjct: 59 GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 104 >gi|148270880|ref|YP_001245340.1| SirA family protein [Thermotoga petrophila RKU-1] gi|147736424|gb|ABQ47764.1| SirA family protein [Thermotoga petrophila RKU-1] Length = 181 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 L+ +T + +LM D S++AE I+ ++ L +VKAGI++ ++ G Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVLKTPEG 68 >gi|126437595|ref|YP_001073286.1| regulatory proteins, IclR [Mycobacterium sp. JLS] gi|126237395|gb|ABO00796.1| regulatory protein, IclR [Mycobacterium sp. JLS] Length = 306 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69 +R+L + A +S++A +++ I+ L +AG + VR RL Sbjct: 22 VRILDFLADRPQERFGVSELARRVGLTKPTCLGIVTALSEAGYL--VRDPADKTYRLG-- 77 Query: 70 ADQITIL 76 IT+ Sbjct: 78 PSLITLG 84 >gi|86157440|ref|YP_464225.1| hypothetical protein Adeh_1013 [Anaeromyxobacter dehalogenans 2CP-C] gi|85773951|gb|ABC80788.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 245 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 IRV--LMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +R L+ A + + ++A +S + + L L G+ + G GG+R Sbjct: 3 VRAARLLDLADRLRASAETTVDELAVGLGVSARTVRRDLALLRDRGMPITGQAGPGGGIR 62 Query: 66 L 66 L Sbjct: 63 L 63 >gi|260904929|ref|ZP_05913251.1| transcriptional regulator, ArsR family protein [Brevibacterium linens BL2] Length = 136 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Y IR+L A + ++ + + L + L L + +VE+ R Sbjct: 20 YRIRILELLAGAAE--VSVTDLQAETELEASHLSQHLAVLRRHRLVESERRAS 70 >gi|325689860|gb|EGD31864.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis SK115] Length = 311 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 D +IA+ IS ++K +Q L K GI +E+V+ R RL Sbjct: 9 DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNRS--YRLT 59 >gi|319789204|ref|YP_004150837.1| Like-Sm ribonucleoprotein core [Thermovibrio ammonificans HB-1] gi|317113706|gb|ADU96196.1| Like-Sm ribonucleoprotein core [Thermovibrio ammonificans HB-1] Length = 156 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR 61 Y + +Y + ++A+ S + K++ L + G ++ + RGR Sbjct: 16 YLSEFKEYSGTVEELAKLAGASTYLIKKVIGELEEEGFLKSDSKRGRG 63 >gi|315298298|gb|EFU57553.1| FCD domain protein [Escherichia coli MS 16-3] Length = 301 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE IS + ILQ L G++ V G+ + R +Q Sbjct: 34 LAEIYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73 >gi|260430322|ref|ZP_05784295.1| transcriptional regulator, GntR family [Citreicella sp. SE45] gi|260418351|gb|EEX11608.1| transcriptional regulator, GntR family [Citreicella sp. SE45] Length = 224 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 4 TKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +++ +R ++ + P ++++E +S+ + + +Q L G++E Sbjct: 13 SQQVHEALRARILALELAPGQPLSRAEVSETYGVSQTPVREAMQRLADEGLLE 65 >gi|317049155|ref|YP_004116803.1| GntR family transcriptional regulator [Pantoea sp. At-9b] gi|316950772|gb|ADU70247.1| transcriptional regulator, GntR family [Pantoea sp. At-9b] Length = 331 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 8 DYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +Y I L + + +AE ++ + + ++ + L A +V + G Sbjct: 22 EYAITFGAL----KPGEQLPSVRDMAEQVGVAPMTVAQVYRELKAAELVYSKPGAG 73 >gi|315500272|ref|YP_004089075.1| transcriptional regulator, crp/fnr family [Asticcacaulis excentricus CB 48] gi|315418284|gb|ADU14924.1| transcriptional regulator, Crp/Fnr family [Asticcacaulis excentricus CB 48] Length = 250 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 10 GIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 R L A+ I Q++ + ++ +++ L + G++ TVRGR Sbjct: 154 AARWLT-LALDRTETATIPLTQDQLSSMLGVGRAYVSRVMGVLQRDGLLATVRGR 207 >gi|222530720|ref|YP_002574609.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM 6725] gi|222457567|gb|ACM61828.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM 6725] Length = 718 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 8 DYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +Y I R ++ QIAEA + + K+L L G V+ V G Sbjct: 507 EYAISKERREILEVIKQLGGSATPKQIAEALGKTRSNVNKLLLKLAGDGYVKAVNGI--- 563 Query: 64 VRLC 67 L Sbjct: 564 YSLA 567 >gi|154245569|ref|YP_001416527.1| GntR domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159654|gb|ABS66870.1| GntR domain protein [Xanthobacter autotrophicus Py2] Length = 238 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + Q+AE +S + + + L G+V T +G Sbjct: 32 QPGERLPTEHQMAETYGVSRPIVREAVGRLKHDGLVTTRQGAG 74 >gi|329889711|ref|ZP_08268054.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568] gi|328845012|gb|EGF94576.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568] Length = 111 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 17/42 (40%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H +IA+A + + L L +AG++ + R Sbjct: 25 LVRHEPEGLPAGEIADALAVPANTMSAHLGVLSRAGLISSER 66 >gi|297163161|gb|ADI12873.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 111 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 15/106 (14%) Query: 3 LTKRTDYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV- 57 LT+ + R + A+ + P +++A+ IS L L L GIV V Sbjct: 11 LTRFGR-ALADPIRCRILLALR-EAPTHPAELADRLEISRTRLSNHLACLRDCGIVVAVP 68 Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE----CFASHKIDC 99 GRR L + + + E C + + C Sbjct: 69 EGRRVRYELA----DTRLGHALDDLRGAILAVEADRTCPDAEEKGC 110 >gi|239834043|ref|ZP_04682371.1| Exu regulon transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239822106|gb|EEQ93675.1| Exu regulon transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A++ +S + + + L G+VET +G Sbjct: 40 LAQSFGVSRSVVREAIAQLRNEGLVETRQGVG 71 >gi|150376533|ref|YP_001313129.1| GntR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031080|gb|ABR63196.1| transcriptional regulator, GntR family [Sinorhizobium medicae WSM419] Length = 257 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +R ++ A+++ P ++ +S + + + ++ L G ++T G+ G+ + Sbjct: 29 LRGMIERRELAVNDKLP-SERELVAVYGVSRITVRQAIKELENLGYLQTRPGK--GIYVT 85 Query: 68 RPADQITILDVVK 80 PA + +VV+ Sbjct: 86 EPAPVYEL-EVVR 97 >gi|145607361|ref|XP_361725.2| hypothetical protein MGG_04199 [Magnaporthe oryzae 70-15] gi|145014937|gb|EDJ99505.1| hypothetical protein MGG_04199 [Magnaporthe oryzae 70-15] Length = 735 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 + + +R ++Y ++ N ++ +S L KIL+ Sbjct: 47 STQARCALRAMLYLRDNSGLANT----SDKLGLSASCLRKILR 85 >gi|134101241|ref|YP_001106902.1| hypothetical protein SACE_4709 [Saccharopolyspora erythraea NRRL 2338] gi|291007769|ref|ZP_06565742.1| hypothetical protein SeryN2_24859 [Saccharopolyspora erythraea NRRL 2338] gi|133913864|emb|CAM03977.1| hypothetical protein SACE_4709 [Saccharopolyspora erythraea NRRL 2338] Length = 179 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 10 GIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR 61 +R L + ++ P + +A A IS + L+ LV G+VE VR +R Sbjct: 13 ALRALAHPVRLRMLSLIWSAPRSAAGLARALGISHGLASQHLRKLVDVGLVELDEVRAKR 72 Query: 62 GG 63 GG Sbjct: 73 GG 74 >gi|94969987|ref|YP_592035.1| MarR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552037|gb|ABF41961.1| transcriptional regulator, MarR family [Candidatus Koribacter versatilis Ellin345] Length = 180 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +RVL+ RIS +A IS + ++L+ L G+VE VRG Sbjct: 58 LRVLV-----AREGTRISDLAAVSAISPSAMTRVLEKLEARGLVERVRGAH 103 >gi|150017968|ref|YP_001310222.1| GntR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904433|gb|ABR35266.1| regulatory protein GntR, HTH [Clostridium beijerinckii NCIMB 8052] Length = 246 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++ +S L + L L G+V +RG+ Sbjct: 34 EGSRLPSEPELSKLIGVSRTTLRQALALLQDDGLVNNIRGKG 75 >gi|331696230|ref|YP_004332469.1| ArsR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950919|gb|AEA24616.1| transcriptional regulator, ArsR family [Pseudonocardia dioxanivorans CB1190] Length = 290 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 17/45 (37%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ + ++AE IS+ ++ L G + R Sbjct: 47 LLHAVAAGGRQIPVGELAEQLGISQSTCSHHVRKLADVGFLTVRR 91 >gi|325568630|ref|ZP_08144923.1| thioesterase [Enterococcus casseliflavus ATCC 12755] gi|325157668|gb|EGC69824.1| thioesterase [Enterococcus casseliflavus ATCC 12755] Length = 443 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRGIAKDLNVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESF 86 VV+ E Sbjct: 77 VVQIIEGDV 85 >gi|309951503|gb|ADO95169.1| putative ArsR family transcriptional regulator [Sinorhizobium sp. M14] Length = 119 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ H IA A + + + L L +AG+V + R Sbjct: 22 FRLLI---KHAPEGLPAGDIARALVVPQNTMSAHLNILSRAGLVTSQR 66 >gi|307943057|ref|ZP_07658402.1| phosphonate metabolism transcriptional regulator PhnF [Roseibium sp. TrichSKD4] gi|307773853|gb|EFO33069.1| phosphonate metabolism transcriptional regulator PhnF [Roseibium sp. TrichSKD4] Length = 237 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +Q+A ++ + + L LV G++ T RG Sbjct: 26 GDKLPTEAQLAARFGVNRHTVRQSLAALVDDGVIFTRRGAG 66 >gi|296101582|ref|YP_003611728.1| GntR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056041|gb|ADF60779.1| GntR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 473 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ A+ P ++A A +S + L L + G +E+ G Sbjct: 34 ALRLLILDGRLALSTRLPGE-RELATALDVSRTTISSALAHLREEGYLESRHGSG 87 >gi|291286625|ref|YP_003503441.1| putative transcriptional regulator [Denitrovibrio acetiphilus DSM 12809] gi|290883785|gb|ADD67485.1| putative transcriptional regulator [Denitrovibrio acetiphilus DSM 12809] Length = 435 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 21 NDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 D P I Q++E ISE + K ++ L + G VE +G GG Sbjct: 386 GDNPEITIPQLSEIVGISETAIEKNIKYLRENGFVE-RQGTFGG 428 >gi|317154001|ref|YP_004122049.1| regulatory protein MarR [Desulfovibrio aespoeensis Aspo-2] gi|316944252|gb|ADU63303.1| regulatory protein MarR [Desulfovibrio aespoeensis Aspo-2] Length = 152 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 I + H P ++++A+ +S+ + +++ L K G+V Sbjct: 42 IHAVAKLCDHG--PMSLTELADRAFVSKGAMSQLVARLEKKGLV 83 >gi|253575056|ref|ZP_04852395.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str. D14] gi|251845512|gb|EES73521.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str. D14] Length = 124 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 D + ++A I+ + + Q L + IVET RG Sbjct: 31 GDKIPSVRELAAELQINPNTVQRTFQELEREAIVETKRG 69 >gi|227500308|ref|ZP_03930375.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217594|gb|EEI82906.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 133 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 21/41 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +++++ I++ + K + L + G++ET G Sbjct: 41 GDKFPSVRELSKSLSINQTTVSKAFKELDRLGLIETRPGIG 81 >gi|323339529|ref|ZP_08079805.1| GntR family transcriptional regulator [Lactobacillus ruminis ATCC 25644] gi|323093060|gb|EFZ35656.1| GntR family transcriptional regulator [Lactobacillus ruminis ATCC 25644] Length = 127 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++I+ I+ + K + LV+AG++E RG Sbjct: 36 EGEQIPSTTEISRDFHINPATVLKGMNILVEAGLIEKRRGIG 77 >gi|226365027|ref|YP_002782810.1| DeoR family transcriptional regulator [Rhodococcus opacus B4] gi|226243517|dbj|BAH53865.1| putative DeoR family transcriptional regulator [Rhodococcus opacus B4] Length = 323 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M ++ + +R + Q+A+ +S +++ + L AG+ + T G Sbjct: 1 MRSSRLVEVMLR------LEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESG 54 Query: 60 RRGGVRL 66 GG+RL Sbjct: 55 PGGGIRL 61 >gi|149915523|ref|ZP_01904049.1| pyruvate dehydrogenase complex repressor [Roseobacter sp. AzwK-3b] gi|149810415|gb|EDM70258.1| pyruvate dehydrogenase complex repressor [Roseobacter sp. AzwK-3b] Length = 255 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + ++AE +S L + + L G++ T G I + DV Sbjct: 29 RPGERLPSERELAERLGVSRPSLREAVAELQDKGLLSTRAGAG-----------IFVADV 77 Query: 79 V 79 + Sbjct: 78 L 78 >gi|119964076|ref|YP_947741.1| GntR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119950935|gb|ABM09846.1| putative transcriptional regulator, GntR family [Arthrobacter aurescens TC1] Length = 254 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 15 MYCAIHNDYPNRIS------QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + AIH+ S +A +S + K + LV++G++ RG Sbjct: 33 IEAAIHSGVLEPGSRLENEIDLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 85 >gi|145594806|ref|YP_001159103.1| AsnC/Lrp family regulatory protein [Salinispora tropica CNB-440] gi|145304143|gb|ABP54725.1| transcriptional regulator, AsnC family [Salinispora tropica CNB-440] Length = 162 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L++ A+ +D +++A +S + + L L +AG++ R Sbjct: 24 RSLLH-ALRDDPRASAAELARQVGMSAPAVRERLHRLERAGVIRGYR 69 >gi|150017181|ref|YP_001309435.1| GntR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903646|gb|ABR34479.1| transcriptional regulator, GntR family [Clostridium beijerinckii NCIMB 8052] Length = 239 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 17/33 (51%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + S + + + L K G V++V+G+ Sbjct: 33 ELVDKFECSRNTVRRAISELSKDGYVKSVKGKG 65 >gi|307544088|ref|YP_003896567.1| ArsR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216112|emb|CBV41382.1| putative transcriptional regulator, ArsR family [Halomonas elongata DSM 2581] Length = 118 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + +IA + + L L +AG+V + R Sbjct: 13 LSQATR--LETFRVLVRFEPEGLPAGEIARLLGVPHNTMSTHLGVLSRAGLVSSRR 66 >gi|257878027|ref|ZP_05657680.1| transcriptional repressor CodY [Enterococcus faecium 1,230,933] gi|257881187|ref|ZP_05660840.1| transcriptional repressor CodY [Enterococcus faecium 1,231,502] gi|257884850|ref|ZP_05664503.1| transcriptional repressor CodY [Enterococcus faecium 1,231,501] gi|257889774|ref|ZP_05669427.1| transcriptional repressor CodY [Enterococcus faecium 1,231,410] gi|257892289|ref|ZP_05671942.1| transcriptional repressor CodY [Enterococcus faecium 1,231,408] gi|258616482|ref|ZP_05714252.1| transcriptional repressor CodY [Enterococcus faecium DO] gi|260559077|ref|ZP_05831263.1| transcriptional repressor CodY [Enterococcus faecium C68] gi|261207611|ref|ZP_05922296.1| transcriptional repressor CodY [Enterococcus faecium TC 6] gi|289565123|ref|ZP_06445576.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium D344SRF] gi|293556771|ref|ZP_06675334.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1039] gi|293563429|ref|ZP_06677878.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1162] gi|293568158|ref|ZP_06679494.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1071] gi|293570281|ref|ZP_06681350.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E980] gi|294614814|ref|ZP_06694709.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1636] gi|294617493|ref|ZP_06697124.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1679] gi|294622310|ref|ZP_06701353.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium U0317] gi|314938039|ref|ZP_07845349.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133a04] gi|314941975|ref|ZP_07848836.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133C] gi|314948772|ref|ZP_07852144.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0082] gi|314951790|ref|ZP_07854829.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133A] gi|314991803|ref|ZP_07857261.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133B] gi|314995844|ref|ZP_07860931.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133a01] gi|257812255|gb|EEV41013.1| transcriptional repressor CodY [Enterococcus faecium 1,230,933] gi|257816845|gb|EEV44173.1| transcriptional repressor CodY [Enterococcus faecium 1,231,502] gi|257820688|gb|EEV47836.1| transcriptional repressor CodY [Enterococcus faecium 1,231,501] gi|257826134|gb|EEV52760.1| transcriptional repressor CodY [Enterococcus faecium 1,231,410] gi|257828668|gb|EEV55275.1| transcriptional repressor CodY [Enterococcus faecium 1,231,408] gi|260074834|gb|EEW63150.1| transcriptional repressor CodY [Enterococcus faecium C68] gi|260077994|gb|EEW65700.1| transcriptional repressor CodY [Enterococcus faecium TC 6] gi|289163130|gb|EFD10977.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium D344SRF] gi|291589148|gb|EFF20960.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1071] gi|291592276|gb|EFF23890.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1636] gi|291596233|gb|EFF27495.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1679] gi|291598202|gb|EFF29300.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium U0317] gi|291601103|gb|EFF31392.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1039] gi|291604690|gb|EFF34175.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E1162] gi|291609688|gb|EFF38949.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium E980] gi|313589948|gb|EFR68793.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133a01] gi|313593614|gb|EFR72459.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133B] gi|313596069|gb|EFR74914.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133A] gi|313599227|gb|EFR78072.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133C] gi|313642614|gb|EFS07194.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0133a04] gi|313644838|gb|EFS09418.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium TX0082] Length = 263 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 ++ + ++ S IA++ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|227551198|ref|ZP_03981247.1| transcriptional repressor CodY [Enterococcus faecium TX1330] gi|257896179|ref|ZP_05675832.1| transcriptional repressor CodY [Enterococcus faecium Com12] gi|293377179|ref|ZP_06623387.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium PC4.1] gi|227179666|gb|EEI60638.1| transcriptional repressor CodY [Enterococcus faecium TX1330] gi|257832744|gb|EEV59165.1| transcriptional repressor CodY [Enterococcus faecium Com12] gi|292644199|gb|EFF62301.1| GTP-sensing transcriptional pleiotropic repressor CodY [Enterococcus faecium PC4.1] Length = 263 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 ++ + ++ S IA++ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|225026965|ref|ZP_03716157.1| hypothetical protein EUBHAL_01221 [Eubacterium hallii DSM 3353] gi|224955701|gb|EEG36910.1| hypothetical protein EUBHAL_01221 [Eubacterium hallii DSM 3353] Length = 326 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +I + IS ++K + L K G +E+V + G RL + D +T Sbjct: 11 QQEGFISGQRICDELGISRTAVWKYMNSLKKEGYEIESVTRK--GYRLLQSPDLLT 64 >gi|297203342|ref|ZP_06920739.1| helix-turn-helix type 11 domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197711429|gb|EDY55463.1| helix-turn-helix type 11 domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 113 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR----- 65 RVL A + RI IA C ++E + KI+ L + G + VR GR R Sbjct: 19 RVLAAIADNPS--TRIRDIAAHCRLTERAVQKIISDLEQDGYLSHVREGRTNSYRIDPGK 76 Query: 66 -LCRPAD 71 L PA+ Sbjct: 77 VLRHPAE 83 >gi|254388127|ref|ZP_05003363.1| GntR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294817394|ref|ZP_06776036.1| GntR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326446269|ref|ZP_08221003.1| gntR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197701850|gb|EDY47662.1| GntR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294322209|gb|EFG04344.1| GntR-family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 136 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++T +R+ + D ++ EA I+ + K + L + G+VE GR Sbjct: 17 QIVQQTKQALRLGTL--VPGDRLPTAKEVVEATAINPNTVLKAYRELEREGLVEPRPGRG 74 >gi|167586663|ref|ZP_02379051.1| GntR domain protein [Burkholderia ubonensis Bu] Length = 242 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 15/110 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70 D +++ +S + + + + +G+VET G G L Sbjct: 35 RPGDKLPTETEVMATQGVSRTVVREAISRMQASGLVETRHGI-GSFVLEPSRRQALGIDP 93 Query: 71 DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118 I T+ DV+ E + +EC + + LR+AL+A Sbjct: 94 ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 139 >gi|121606428|ref|YP_983757.1| regulatory protein GntR, HTH [Polaromonas naphthalenivorans CJ2] gi|120595397|gb|ABM38836.1| transcriptional regulator, GntR family [Polaromonas naphthalenivorans CJ2] Length = 260 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 D ++ +A IS + + + L AG+VET G G L + + D Sbjct: 34 RPGDRLPPEPELVQAFGISRTVVRESMLRLQAAGLVETRHGI-GTFVLAPDPGRALLSD 91 >gi|110635317|ref|YP_675525.1| histidine utilization repressor [Mesorhizobium sp. BNC1] gi|110286301|gb|ABG64360.1| transcriptional regulator, histidine utilization repressor, GntR family [Chelativorans sp. BNC1] Length = 241 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88 +A S + + K++ L K+G++E R ++ G + P Q +L++ EE + Sbjct: 39 DLAVQYGCSRMTVNKVMTQLAKSGLIE--RRKKSGTFVAHPQAQSAVLEIHDIREEVQSL 96 Query: 89 A 89 Sbjct: 97 N 97 >gi|291526760|emb|CBK92346.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Eubacterium rectale M104/1] Length = 326 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 ++ D ++ +S ++K + L +AG +E + + G RL D Sbjct: 5 ILRLLRSADGYISGQELCNRFGVSRTAVWKAINQLKEAGYEIEAQQNK--GYRLMAAPDL 62 Query: 73 ITILDV 78 +T ++ Sbjct: 63 MTEAEI 68 >gi|264676699|ref|YP_003276605.1| GntR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207211|gb|ACY31309.1| transcriptional regulator, GntR family [Comamonas testosteroni CNB-2] Length = 225 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + ++EA IS L ++ + L K G++ V GV + +I+D+ Sbjct: 27 LSPGQRLSEAALSEALDISRNTLREVFRMLTKEGLL--VHEPNKGVSVAV-PSMASIIDI 83 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119 + + EC A L + + L + A Sbjct: 84 YRV----RRMIECQA-------LAQAYPMHPALTRMREAVE 113 >gi|290959313|ref|YP_003490495.1| MarR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260648839|emb|CBG71953.1| putative MarR family transcriptional regulator [Streptomyces scabiei 87.22] Length = 192 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +L + + R++++AE I+ L ++ L K G+V Sbjct: 45 MLAALSEAPERRMRMTELAERLKITRSRLTYVVTRLEKDGLVR 87 >gi|257898816|ref|ZP_05678469.1| transcriptional repressor CodY [Enterococcus faecium Com15] gi|257836728|gb|EEV61802.1| transcriptional repressor CodY [Enterococcus faecium Com15] Length = 263 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 ++ + ++ S IA++ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|257887685|ref|ZP_05667338.1| transcriptional repressor CodY [Enterococcus faecium 1,141,733] gi|257823739|gb|EEV50671.1| transcriptional repressor CodY [Enterococcus faecium 1,141,733] Length = 263 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 ++ + ++ S IA++ I+ + L+ L AGI+E+ G +G Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247 >gi|257867186|ref|ZP_05646839.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus EC30] gi|257873521|ref|ZP_05653174.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus EC10] gi|257877296|ref|ZP_05656949.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus EC20] gi|257801242|gb|EEV30172.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus EC30] gi|257807685|gb|EEV36507.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus EC10] gi|257811462|gb|EEV40282.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus EC20] Length = 443 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRGIAKDLNVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESF 86 VV+ E Sbjct: 77 VVQIIEGDV 85 >gi|218509887|ref|ZP_03507765.1| probable transcriptional regulator protein, ROK family [Rhizobium etli Brasil 5] Length = 283 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 13/82 (15%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R ++ IH P ++IA ++ + +I+ L+ G++ R R G L Sbjct: 26 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG---LRGQP- 81 Query: 72 QITILDVVKATEESFFVAECFA 93 A E CFA Sbjct: 82 ---------AIELEINPDACFA 94 >gi|86739698|ref|YP_480098.1| ArsR family transcriptional regulator [Frankia sp. CcI3] gi|86566560|gb|ABD10369.1| transcriptional regulator, ArsR family [Frankia sp. CcI3] Length = 267 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 + ++A+ IS + + L+ L +AG++ R GG R Sbjct: 29 TVGELAKPYGISLQAVSRHLKVLQEAGLI---RRPGGGHR 65 >gi|325961917|ref|YP_004239823.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468004|gb|ADX71689.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 130 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVE 55 VL+ A+ ++ P R S++ ISE L + L+ L + G+V Sbjct: 43 VLLLLAL-SEGPQRWSELRRRAEGISEKMLAQTLKTLERDGLVR 85 >gi|317132286|ref|YP_004091600.1| transcriptional regulator, Crp/Fnr family [Ethanoligenens harbinense YUAN-3] gi|315470265|gb|ADU26869.1| transcriptional regulator, Crp/Fnr family [Ethanoligenens harbinense YUAN-3] Length = 216 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +Q+A S + + L+ + + GI++T RG+ Sbjct: 175 AQVAARLGTSREVVTRCLRKMKRDGIIQTERGK 207 >gi|222149408|ref|YP_002550365.1| transcriptional regulator ArsR family [Agrobacterium vitis S4] gi|221736391|gb|ACM37354.1| transcriptional regulator ArsR family [Agrobacterium vitis S4] Length = 105 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C++ + +A +S+ L + L L +V+T R Sbjct: 25 RLMILCSLVQGE-VPVGVLASQVGLSQSALSQHLSKLRAQKLVKTRR 70 >gi|210610326|ref|ZP_03288355.1| hypothetical protein CLONEX_00545 [Clostridium nexile DSM 1787] gi|210152556|gb|EEA83562.1| hypothetical protein CLONEX_00545 [Clostridium nexile DSM 1787] Length = 326 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 + Q+ E +S ++K+++ L G +E VR R G R+ D ++ + Sbjct: 10 RESKEYVSGQQLCERLQVSRTAVWKVIKQLENEGYQIEAVRNR--GYRIVECPDVLSQEE 67 Query: 78 VVKATEESFFVAECFASH 95 + ES EC H Sbjct: 68 I-----ESLMQTECIGRH 80 >gi|206900504|ref|YP_002249996.1| transcription regulator, putative [Dictyoglomus thermophilum H-6-12] gi|206739607|gb|ACI18665.1| transcription regulator, putative [Dictyoglomus thermophilum H-6-12] Length = 252 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 22/35 (62%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + +IA+ ISE+ + + L+ L K G+++ VRG Sbjct: 19 LTVQEIAKELSISEITVRRDLKFLEKQGLIKRVRG 53 >gi|239828658|ref|YP_002951282.1| TrmB family transcriptional regulator [Geobacillus sp. WCH70] gi|239808951|gb|ACS26016.1| transcriptional regulator, TrmB [Geobacillus sp. WCH70] Length = 141 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 T IR+L Y + + I +A+ +S + + L+K G+V RG Sbjct: 30 THQAIRLLQYIEKNGEA--TIGDLAKHLAVSHNTTSEHTKRLIKKGLVSKKRG 80 >gi|297579938|ref|ZP_06941865.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535584|gb|EFH74418.1| transcriptional regulator [Vibrio cholerae RC385] Length = 452 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L D + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGDLDGSLETLASRLGISDRYLRQLFQR 126 >gi|149195874|ref|ZP_01872931.1| transcriptional regulator, GntR family protein [Lentisphaera araneosa HTCC2155] gi|149141336|gb|EDM29732.1| transcriptional regulator, GntR family protein [Lentisphaera araneosa HTCC2155] Length = 229 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 21 NDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D P +++ E+ +S + + +Q L GI+ ++ G Sbjct: 30 PDQPIPSEARLCESFGVSRTVVREAIQQLKSQGIIHSIPGSG 71 >gi|92112995|ref|YP_572923.1| manganese transport regulator MntR [Chromohalobacter salexigens DSM 3043] gi|91796085|gb|ABE58224.1| iron dependent repressor [Chromohalobacter salexigens DSM 3043] Length = 139 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 21/111 (18%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT-------- 74 R S +AE +S + K++ L + G+ V G+ L + + Sbjct: 37 GEARASDLAECFGVSAAAVSKVITRLKRDGL--AVARPYRGIFLTEEGEALAKRVTARHR 94 Query: 75 -ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 +LD ++A VA + + C + +NA D L + Sbjct: 95 VVLDALRALGVPEEVARADSEG-----IEHHCS-----EETVNAMRDFLRR 135 >gi|56696283|ref|YP_166640.1| AraC family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678020|gb|AAV94686.1| transcriptional regulator, AraC family [Ruegeria pomeroyi DSS-3] Length = 323 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 16/47 (34%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 M R L + P I+ IA A +SE L ++ Sbjct: 209 MRFETRNRVAFAALRLMRANLVPPLPIAAIARAQGVSERQLERVFAR 255 >gi|83955951|ref|ZP_00964462.1| hypothetical protein NAS141_04008 [Sulfitobacter sp. NAS-14.1] gi|83839715|gb|EAP78893.1| hypothetical protein NAS141_04008 [Sulfitobacter sp. NAS-14.1] Length = 395 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62 R ++ + + P S +A +S + IL+ L G+ + VRG+ G Sbjct: 24 RAILSL-LQRNGPTPGSDLARQTGLSAQTISVILRKLKSDGLTSQCKPVRGKVG 76 >gi|332667899|ref|YP_004450687.1| GntR family transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332336713|gb|AEE53814.1| transcriptional regulator, GntR family [Haliscomenobacter hydrossis DSM 1100] Length = 122 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 VLM D + ++A ++ + + L + GI+ RG G + A + Sbjct: 21 VLMEQVKAGDRALSVRELAAQVQVNPNTVVRSYGLLEREGILYNQRGL--GFYIAENALE 78 >gi|330958270|gb|EGH58530.1| GntR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 244 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATVSDVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|329935184|ref|ZP_08285175.1| GntR family transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329305253|gb|EGG49111.1| GntR family transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 246 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 21 NDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 P + +A+ ++ + + L L +G+VE + GR R Sbjct: 28 AGQPLPSEEALAKQFGVTRPTVRQGLTELRASGLVEAIMGRG---TFARSP 75 >gi|325287283|ref|YP_004263073.1| ArsR family transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322737|gb|ADY30202.1| transcriptional regulator, ArsR family [Cellulophaga lytica DSM 7489] Length = 467 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 A++ + I ++A IS+ + K + L + G+++ G +GG Sbjct: 404 AVNENSKVTIGELASKIGISDTAIGKNMDVLKELGLLD-REGTKGG 448 >gi|313887724|ref|ZP_07821406.1| IclR helix-turn-helix domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846333|gb|EFR33712.1| IclR helix-turn-helix domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 249 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 ++ + I++I+E I +IL L+ G V Sbjct: 11 VLDILKSENRELTIAEISEFLNIPPSTAHRILSTLIGVGYV 51 >gi|291526249|emb|CBK91836.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Eubacterium rectale DSM 17629] Length = 326 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 ++ D ++ +S ++K + L +AG +E + + G RL D Sbjct: 5 ILRLLRSADGYISGQELCNRFGVSRTAVWKAINQLKEAGYEIEAQQNK--GYRLMAAPDL 62 Query: 73 ITILDV 78 +T ++ Sbjct: 63 MTEAEI 68 >gi|302875123|ref|YP_003843756.1| transcriptional regulator, GntR family [Clostridium cellulovorans 743B] gi|307690251|ref|ZP_07632697.1| transcriptional regulator, GntR family protein [Clostridium cellulovorans 743B] gi|302577980|gb|ADL51992.1| transcriptional regulator, GntR family [Clostridium cellulovorans 743B] Length = 231 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 8 DYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 DY RVL M + +++E IS + ++L L ++E Sbjct: 14 DYAYRVLKENIMSLELKPGELLSEIELSEKLGISRTPIREVLMKLKSEHLIE 65 >gi|284034640|ref|YP_003384571.1| IclR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813933|gb|ADB35772.1| transcriptional regulator, IclR family [Kribbella flavida DSM 17836] Length = 252 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + RT +RVL + A P + +IA A + + +L+ ++ G V Sbjct: 8 STRT---LRVLTFLATQPG-PVPMERIASAVGLPRSSTYHLLRAMIDEGFV 54 >gi|171185559|ref|YP_001794478.1| ArsR family transcriptional regulator [Thermoproteus neutrophilus V24Sta] gi|170934771|gb|ACB40032.1| transcriptional regulator, ArsR family [Thermoproteus neutrophilus V24Sta] Length = 105 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +++L++ A P I IA+ I L+ L +AG+VE Sbjct: 20 LKILLHLAR---RPTYIQDIAQTLGIPYALAHMHLKVLEEAGLVEGT 63 >gi|170721991|ref|YP_001749679.1| GntR domain-containing protein [Pseudomonas putida W619] gi|169759994|gb|ACA73310.1| GntR domain protein [Pseudomonas putida W619] Length = 249 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D SQI +S + + + L AG VET G GG R+ PA Sbjct: 36 RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDTPATGGFRI-DPA 94 Query: 71 DQITILDVVKATEESFFV 88 +T+ +V+ E + Sbjct: 95 TVVTLREVLAVLELRIAL 112 >gi|186471494|ref|YP_001862812.1| GntR domain-containing protein [Burkholderia phymatum STM815] gi|184197803|gb|ACC75766.1| GntR domain protein [Burkholderia phymatum STM815] Length = 243 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++E +S + + + L G++E+ +G Sbjct: 35 GDRLPTEHFLSENFGVSRNVVREAIASLRAQGLIESRQGIG 75 >gi|86360353|ref|YP_472241.1| GntR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284455|gb|ABC93514.1| probable transcriptional regulator protein, GntR family [Rhizobium etli CFN 42] Length = 240 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A S + + K+L L KAG++E R ++ G + +P Q +L++ Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84 >gi|85715855|ref|ZP_01046833.1| Transcriptional regulatory protein, ArsR family protein [Nitrobacter sp. Nb-311A] gi|85697262|gb|EAQ35142.1| Transcriptional regulatory protein, ArsR family protein [Nitrobacter sp. Nb-311A] Length = 134 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM ++ + +++I A I + L + L L KA +V T R Sbjct: 27 LMILSLLREGEKSVTEIDVATGIGQPALSQQLAELRKAELVTTRR 71 >gi|333023159|ref|ZP_08451223.1| hypothetical protein STTU_0663 [Streptomyces sp. Tu6071] gi|332743011|gb|EGJ73452.1| hypothetical protein STTU_0663 [Streptomyces sp. Tu6071] Length = 688 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 9/66 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRGRRGGVRL 66 R L AI + +++ A +S + L L G+VET G GG Sbjct: 5 RALCVAAIRDLGRATVAETAARARLSRPTVEAALADLTAEGLVETAADQVQHGEAGG--- 61 Query: 67 CRPADQ 72 RPA Q Sbjct: 62 -RPARQ 66 >gi|329929542|ref|ZP_08283266.1| HTH domain protein [Paenibacillus sp. HGF5] gi|328936267|gb|EGG32716.1| HTH domain protein [Paenibacillus sp. HGF5] Length = 315 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 + ++ + ++A+ +S + + LQ L + G+ + + G GG ++ + Sbjct: 10 LMMTVNRMRKFTVRELADQFGVSSRTILRDLQELSELGVPLYSEVGPHGGYQVLKE 65 >gi|326439603|ref|ZP_08214337.1| IclR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRL----CRPADQI 73 + +S+IA + + +++ LV G++E RG +G GV L R QI Sbjct: 15 GESELPLSEIARRAELPKATAHRLVAELVTEGLLE--RGEKGIRLGVALFVLGARVPGQI 72 Query: 74 TILDV 78 D+ Sbjct: 73 KFRDL 77 >gi|325283488|ref|YP_004256029.1| exsB protein [Deinococcus proteolyticus MRP] gi|324315297|gb|ADY26412.1| exsB protein [Deinococcus proteolyticus MRP] Length = 233 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 54 VETVRGRRG-GVRLCRPADQITILDVVK-ATEESFFVA---ECFASHKIDCPLVGSCGLT 108 + TV GR G G RL P +++ +D+V+ A E V C++ C L SC + Sbjct: 151 LATVAGREGRGARLVAPLLEMSKVDIVRTALEVGVPVHLTWSCYSGGSEPCGLCDSCRIR 210 Query: 109 S 109 Sbjct: 211 D 211 >gi|293606254|ref|ZP_06688617.1| GntR family regulatory protein [Achromobacter piechaudii ATCC 43553] gi|292815401|gb|EFF74519.1| GntR family regulatory protein [Achromobacter piechaudii ATCC 43553] Length = 257 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 D ++I+E +S + + L L G++ +G Sbjct: 54 GDKLPSENEISERFGVSRPVVREALLRLRADGLITAHQG 92 >gi|257440652|ref|ZP_05616407.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] gi|257196975|gb|EEU95259.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] Length = 325 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 21/44 (47%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 T++T+ + + + + ++Q+AE IS L K+ + Sbjct: 206 TEQTELAHHLRDHLLTNREGYVSLAQLAEEHGISVSHLQKMFKQ 249 >gi|255292436|dbj|BAH89554.1| AsnC family transcriptional regulator [uncultured bacterium] Length = 153 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M + TD +R+L A+ D ++QIAEA IS+ + + + GI+ + Sbjct: 1 MQILDETD--LRILR--AMQRDGGMTVAQIAEAAGISQSPCSRRIIQMQTKGIIASR 53 >gi|218681344|ref|ZP_03529241.1| ArsR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 215 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 34/121 (28%) Query: 10 GIRVL----------MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 IR L + CA P I+ IA+A + + + +Q L AG+V++ Sbjct: 16 AIRALSAPARIEILKLLCAK---GPLNINDIAQALSLPQSTVATGIQILEDAGLVDS--- 69 Query: 60 RRGGVRLCRPAD---QI---TILDVVKATEES-------FFVAECFASHKIDCPLVGSCG 106 RL + +I T +++ + EES E C + CG Sbjct: 70 -----RLAKARKGNQKICSATYSEILISFEESAAQRANNIIEVEMPVGLYTSCDVHAPCG 124 Query: 107 L 107 L Sbjct: 125 L 125 >gi|254466506|ref|ZP_05079917.1| transcriptional regulator, DeoR family [Rhodobacterales bacterium Y4I] gi|206687414|gb|EDZ47896.1| transcriptional regulator, DeoR family [Rhodobacterales bacterium Y4I] Length = 248 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M R +++A +SE + + ++ L KAG V+ GG L P + Sbjct: 1 MDALRRLGGSARSAELARMLDVSEETVRRTIKALDKAG---AVQRVHGGAFLAGPQSATS 57 Query: 75 IL 76 Sbjct: 58 FA 59 >gi|138895986|ref|YP_001126439.1| manganese transport transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196248878|ref|ZP_03147578.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. G11MC16] gi|167011808|sp|A4IQU0|MNTR_GEOTN RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|134267499|gb|ABO67694.1| Iron-dependent repressor family protein [Geobacillus thermodenitrificans NG80-2] gi|196211754|gb|EDY06513.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. G11MC16] Length = 141 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 13 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTPKGKKIGQR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|115449989|ref|XP_001218748.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114187697|gb|EAU29397.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 372 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 R + C +IA C S L ++L+ LV G V Sbjct: 59 AFRAI--CGQRKG--ITTHEIAAKCGASPSVLSQVLKVLVATGYV 99 >gi|20093615|ref|NP_613462.1| Mn-dependent transcriptional regulator [Methanopyrus kandleri AV19] gi|19886481|gb|AAM01392.1| Mn-dependent transcriptional regulator [Methanopyrus kandleri AV19] Length = 158 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 8 DYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 DY + L + RIS+++E +S+ ++++ L G+VE R G V+L Sbjct: 15 DY-LEALYLLSRRGSGRHVRISELSEYLEVSKPTALEMIRKLADRGLVEYER---GLVKL 70 Query: 67 CRPADQI 73 +I Sbjct: 71 TEKGREI 77 >gi|56420951|ref|YP_148269.1| manganese transport transcriptional regulator [Geobacillus kaustophilus HTA426] gi|261417725|ref|YP_003251407.1| manganese transport transcriptional regulator [Geobacillus sp. Y412MC61] gi|297529417|ref|YP_003670692.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. C56-T3] gi|319767464|ref|YP_004132965.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. Y412MC52] gi|81346869|sp|Q5KX85|MNTR_GEOKA RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|56380793|dbj|BAD76701.1| transcriptional regulator (manganese transport regulator) [Geobacillus kaustophilus HTA426] gi|261374182|gb|ACX76925.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. Y412MC61] gi|297252669|gb|ADI26115.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. C56-T3] gi|317112330|gb|ADU94822.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp. Y412MC52] Length = 141 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +GR+ G R Sbjct: 13 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTPKGRKIGQR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|150389649|ref|YP_001319698.1| MarR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949511|gb|ABR48039.1| transcriptional regulator, MarR family [Alkaliphilus metalliredigens QYMF] Length = 141 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 T IR+L Y + + I +A+ S + ++ L+K G+V R Sbjct: 30 THQAIRLLQYIDKNQE--TTIGDLAKHTNTSSNTASEHIKRLIKKGLVTKKR 79 >gi|329934313|ref|ZP_08284392.1| MarR family transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329305909|gb|EGG49764.1| MarR family transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 155 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 22/37 (59%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + + P R++++A A IS+ +++ + +AG+V Sbjct: 50 LSREGPLRLTELARAEGISQPNATQLVTRMERAGLVR 86 >gi|311109242|ref|YP_003982095.1| transcriptional regulator family protein 36 [Achromobacter xylosoxidans A8] gi|310763931|gb|ADP19380.1| bacterial transcriptional regulator family protein 36 [Achromobacter xylosoxidans A8] Length = 250 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 9/51 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 N+ P ++ +AEA I + I+ L G + L RP Sbjct: 20 QANERPLSLTDLAEAAGIPKSTCHAIVSTLTARGYL---------YTLNRP 61 >gi|307700590|ref|ZP_07637622.1| divergent AAA domain protein [Mobiluncus mulieris FB024-16] gi|307614235|gb|EFN93472.1| divergent AAA domain protein [Mobiluncus mulieris FB024-16] Length = 495 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++L Y A H ++AE IS IL L+K G+V Sbjct: 438 KILDYLATHP--TASSRELAETAGISIGGTRAILNNLIKTGLVT 479 >gi|300716907|ref|YP_003741710.1| GntR-family transcriptional regulator [Erwinia billingiae Eb661] gi|299062743|emb|CAX59863.1| GntR-family transcriptional regulator [Erwinia billingiae Eb661] Length = 242 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + +A+ +S + + + L L ++ TVRGR GG Sbjct: 43 TDLAKMMGVSHITIREALNTLRANELIHTVRGRNGG 78 >gi|302529379|ref|ZP_07281721.1| predicted protein [Streptomyces sp. AA4] gi|302438274|gb|EFL10090.1| predicted protein [Streptomyces sp. AA4] Length = 226 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 24/130 (18%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC-RPA-------------DQI 73 ++ ++ L + +Q L GIV+ G GG+ + R + Sbjct: 36 QELMARFGVAPATLSEAIQLLRARGIVDAKPGPGGGIFVATRSPFTHLSDQLLQLREGKA 95 Query: 74 TI---LDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN-----AFFDVLT 123 T+ L V+ A + S + D + +C L + A A + Sbjct: 96 TVENCLRVLDALDGSVLHDAVENASDEDIADISACAETLKAAWDSAEAPTAIWALHARIA 155 Query: 124 QYSIECLVRN 133 Q S L+R+ Sbjct: 156 QVSPNELLRS 165 >gi|229579076|ref|YP_002837474.1| TrmB family transcriptional regulator [Sulfolobus islandicus Y.G.57.14] gi|228009790|gb|ACP45552.1| transcriptional regulator, TrmB [Sulfolobus islandicus Y.G.57.14] Length = 687 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 24/38 (63%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 A+ ++ + S++A+A +S+ + +L+ L + G+VE Sbjct: 519 ALPDEGGLKTSEVADALKLSKQYALNVLKNLERKGVVE 556 >gi|237729226|ref|ZP_04559707.1| uxu operon transcriptional regulator [Citrobacter sp. 30_2] gi|226908955|gb|EEH94873.1| uxu operon transcriptional regulator [Citrobacter sp. 30_2] Length = 257 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 19/121 (15%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +IAE ++ + + L L G+V+ RG I +LD Sbjct: 28 QPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVDVRRGAG-----------IYVLDN 76 Query: 79 VKA-TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137 +A T +S V C + + +L + F + Q + E +V+ R ++ Sbjct: 77 AEAQTIDSSDVNHCNDAGPFELLQA-----RQLLESNIAEFAAL--QATREDIVKMRQAL 129 Query: 138 K 138 + Sbjct: 130 Q 130 >gi|261409952|ref|YP_003246193.1| transcriptional regulator TrmB [Paenibacillus sp. Y412MC10] gi|261286415|gb|ACX68386.1| transcriptional regulator, TrmB [Paenibacillus sp. Y412MC10] Length = 109 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 1 MHLTKRTDYG----IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M LT R++ P + +IAE I + K L+ L+ AG+VE Sbjct: 1 MELTTFNALAEPSRFRIVNLL---QKGPLTVGEIAERLDIRQPQASKHLKVLLDAGLVE 56 >gi|186473644|ref|YP_001860986.1| regulatory protein GntR HTH [Burkholderia phymatum STM815] gi|184195976|gb|ACC73940.1| regulatory protein GntR HTH [Burkholderia phymatum STM815] Length = 269 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 11 IRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +R + +D + +A+ + + + L L G+VET GR GG Sbjct: 48 LRTAIDLGFFSDGELLPKEAVLADELNVGVFSVREALAQLRSEGLVETRAGRGGG 102 >gi|145588925|ref|YP_001155522.1| regulatory protein IclR [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047331|gb|ABP33958.1| transcriptional regulator, IclR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 277 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L+ + + + +AE + +IL +V +VE RG G RL + Sbjct: 33 LLDALSEQEESSSLKNLAEQTGLHPSTAHRILNDMVACRLVE--RGDGGTYRLGLKLLE- 89 Query: 74 TILDVVKA 81 + ++VKA Sbjct: 90 -LGNLVKA 96 >gi|116694086|ref|YP_728297.1| GntR family transcriptional regulator [Ralstonia eutropha H16] gi|113528585|emb|CAJ94932.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 254 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 + S+I + +S + + L L +G+VET G G L R A+ Sbjct: 44 GNKLPTESEIMASMGVSRTVVREALSRLQASGLVETRHGI-GTFVLARAAE 93 >gi|90410031|ref|ZP_01218048.1| regulator of melibiose operon [Photobacterium profundum 3TCK] gi|90329384|gb|EAS45641.1| regulator of melibiose operon [Photobacterium profundum 3TCK] Length = 131 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 15/35 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 VL+Y + + + IAE +S ++ I Sbjct: 28 VLLYISRNFRSNIKTRDIAEHLGLSPNYVTNIFTK 62 >gi|325679211|ref|ZP_08158802.1| sigma-70, region 4 [Ruminococcus albus 8] gi|324109140|gb|EGC03365.1| sigma-70, region 4 [Ruminococcus albus 8] Length = 340 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 23/43 (53%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + + + P ++++++A IS ++ I++ LV +++ Sbjct: 128 AMNLLILAYEQPVTLTELSKAIGISTTYIEPIVERLVDGELMK 170 >gi|300741994|ref|ZP_07072015.1| transcriptional regulator, MarR family [Rothia dentocariosa M567] gi|300381179|gb|EFJ77741.1| transcriptional regulator, MarR family [Rothia dentocariosa M567] Length = 143 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 P+ QIAE I+ + K L L G+V +V Sbjct: 49 EPSTSPQIAERMGITRQGVQKQLNLLRDEGLVMSV 83 >gi|302557891|ref|ZP_07310233.1| ArsR family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475509|gb|EFL38602.1| ArsR family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 123 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 50 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 96 >gi|238029056|ref|YP_002913281.1| Transcriptional regulator, ArsR family protein [Burkholderia glumae BGR1] gi|237880633|gb|ACR32961.1| Transcriptional regulator, ArsR family protein [Burkholderia glumae BGR1] Length = 110 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 7 TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60 + I R L+ + +IA+ +S L L+ L AG+V + +GR Sbjct: 17 SRLAIFRALV---VAGPEGMPAGEIAQQLGLSPSGLSFHLKDLSHAGLVSSEQKGR 69 >gi|238028026|ref|YP_002912257.1| IclR regulatory protein [Burkholderia glumae BGR1] gi|237877220|gb|ACR29553.1| IclR regulatory protein [Burkholderia glumae BGR1] Length = 269 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A+ + +IL +V +V+ R G RL Sbjct: 19 MRLLDALADHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 76 LE--LGNLVKA 84 >gi|226357806|ref|YP_002787546.1| transcriptional regulator, ROK family [Deinococcus deserti VCD115] gi|226320049|gb|ACO48042.1| putative transcriptional regulator, ROK family [Deinococcus deserti VCD115] Length = 401 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + N ++ IS+ + K+L L G++E R R G RP Sbjct: 22 LKNTKEVTTDELVRRTGISQPTILKVLSALQHEGLIE--RYRHGEPTGGRPP 71 >gi|289579815|ref|YP_003478281.1| hypothetical protein Nmag_0121 [Natrialba magadii ATCC 43099] gi|289529368|gb|ADD03719.1| conserved hypothetical protein [Natrialba magadii ATCC 43099] Length = 116 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 VL + + D + +I+ I+E + +L L G+V +G L ++ Sbjct: 25 VLRFLWENRDRAWKAKEISRRTEINENSIHPVLSRLEDRGLVR-HKGAY--WALTDDLER 81 Query: 73 IT-ILDVVKA 81 + DV +A Sbjct: 82 LRQAYDVHRA 91 >gi|188589028|ref|YP_001920947.1| transcriptional regulator, DeoR family [Clostridium botulinum E3 str. Alaska E43] gi|188499309|gb|ACD52445.1| transcriptional regulator, DeoR family [Clostridium botulinum E3 str. Alaska E43] Length = 320 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++ QI+E I+ +++ + L +G+ + + G GG L Sbjct: 14 LNSGTKITAKQISERLEINIRSVYRYMDALCVSGVPIISESGHNGGYSL 62 >gi|160941445|ref|ZP_02088781.1| hypothetical protein CLOBOL_06337 [Clostridium bolteae ATCC BAA-613] gi|158435655|gb|EDP13422.1| hypothetical protein CLOBOL_06337 [Clostridium bolteae ATCC BAA-613] Length = 295 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 R + + + +++IAE +++ + ++++ L K +V+ Sbjct: 33 RAMTILSILEQKNTASVTEIAEELGVNKSTVSRLMETLKKHDMVQA 78 >gi|134100192|ref|YP_001105853.1| hypothetical protein SACE_3654 [Saccharopolyspora erythraea NRRL 2338] gi|291006587|ref|ZP_06564560.1| hypothetical protein SeryN2_18871 [Saccharopolyspora erythraea NRRL 2338] gi|133912815|emb|CAM02928.1| hypothetical protein SACE_3654 [Saccharopolyspora erythraea NRRL 2338] Length = 107 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 10/79 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--- 67 VL+ A D I Q+A I+E I+ L+ G + R GRR + Sbjct: 30 HVLLCLAAEGD--LTIRQLAHRVGITERATQAIISDLIAGGYLTRTRVGRRNSYTVNPNG 87 Query: 68 --RPADQI--TILDVVKAT 82 R + + ++ A Sbjct: 88 PLRHPLEAHHNVGTLIHAL 106 >gi|325265247|ref|ZP_08131972.1| transcriptional regulator, GntR family [Clostridium sp. D5] gi|324029426|gb|EGB90716.1| transcriptional regulator, GntR family [Clostridium sp. D5] Length = 487 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A +S + K L L + G V+T+ G+ Sbjct: 283 KQLARQYDVSISTVRKALSELEQRGFVKTLNGKG 316 >gi|323691475|ref|ZP_08105746.1| anaerobic nitric oxide reductase transcription regulator [Clostridium symbiosum WAL-14673] gi|323504448|gb|EGB20239.1| anaerobic nitric oxide reductase transcription regulator [Clostridium symbiosum WAL-14673] Length = 673 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 21 NDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + + ++ E ISE + +IL L ++G + RGR GG+ L Sbjct: 608 SGRTSLLLELKERGISISENRMERILSKLQESGYIVRNRGR-GGICLTEA 656 >gi|323483079|ref|ZP_08088472.1| anaerobic nitric oxide reductase transcription regulator [Clostridium symbiosum WAL-14163] gi|323403619|gb|EGA95924.1| anaerobic nitric oxide reductase transcription regulator [Clostridium symbiosum WAL-14163] Length = 673 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 21 NDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + + ++ E ISE + +IL L ++G + RGR GG+ L Sbjct: 608 SGRTSLLLELKERGISISENRMERILSKLQESGYIVRNRGR-GGICLTEA 656 >gi|311898707|dbj|BAJ31115.1| putative GntR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 132 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 2/55 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R + D ++ ++A I+ + K + L G+V G Sbjct: 22 VRQALR--LGLLSEGDRLPKVKEVAAKVAINPNTVLKAYRQLENEGLVSPRPGVG 74 >gi|262280740|ref|ZP_06058523.1| IclR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262257640|gb|EEY76375.1| IclR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 257 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 8/114 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M ++ I ++ + + I E +S+ ++ L+ LV +++ + G Sbjct: 1 MAISSFGK--ILTVLDLFSVSRPIINVDIICEELGLSKPTSYRYLKELVSTDLLKRINGT 58 Query: 61 RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113 G L +I +LD + + T+ ++ F + ++ C L + L Sbjct: 59 SGDYTLG---SKIAVLDYISRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107 >gi|326200862|ref|ZP_08190734.1| transcriptional regulator, GntR family [Clostridium papyrosolvens DSM 2782] gi|325988430|gb|EGD49254.1| transcriptional regulator, GntR family [Clostridium papyrosolvens DSM 2782] Length = 126 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 21/41 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++A+ I+ + K + L GI+ +V+G+ Sbjct: 32 DDKIPSVRELAQTLTINPNTIQKAYKDLEAEGIIYSVKGKG 72 >gi|297560592|ref|YP_003679566.1| GntR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845040|gb|ADH67060.1| GntR domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 267 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 A ++AE +S + L + L+ L G++ +G+ Sbjct: 44 ARPGSQLPSEKELAERFGVSRVVLREALRTLEAKGLIHRRQGK 86 >gi|229819465|ref|YP_002880991.1| MarR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565378|gb|ACQ79229.1| transcriptional regulator, MarR family [Beutenbergia cavernae DSM 12333] Length = 203 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 7/63 (11%) Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L TD +R L + A + +AE IS K+L L AG VE R Sbjct: 65 MKLG-ETD--MRALRFLVAAKNQGIAVTPGMLAEHLNISSAATTKLLDRLSAAGHVE--R 119 Query: 59 GRR 61 G Sbjct: 120 GPH 122 >gi|187777961|ref|ZP_02994434.1| hypothetical protein CLOSPO_01553 [Clostridium sporogenes ATCC 15579] gi|187774889|gb|EDU38691.1| hypothetical protein CLOSPO_01553 [Clostridium sporogenes ATCC 15579] Length = 497 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ I +A+ IS + + K L + G+V T++G+ Sbjct: 24 RIMSGFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73 >gi|220911744|ref|YP_002487053.1| MarR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858622|gb|ACL38964.1| transcriptional regulator, MarR family [Arthrobacter chlorophenolicus A6] Length = 165 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + R + +AE +S L + + L AG+V Sbjct: 47 GEGETRAAHLAERLGVSPPVLSRHIAELADAGLV 80 >gi|162451938|ref|YP_001614305.1| DeoR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161162520|emb|CAN93825.1| putative transcriptional regulator (DeoR family) [Sorangium cellulosum 'So ce 56'] Length = 336 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68 +A +S +++ L L AG+ V RG GG+ L Sbjct: 15 RAKSRQLTAEDLARRLEVSARTIYRDLDALSSAGVPVYAQRGPSGGISLAE 65 >gi|160940020|ref|ZP_02087365.1| hypothetical protein CLOBOL_04909 [Clostridium bolteae ATCC BAA-613] gi|158436600|gb|EDP14367.1| hypothetical protein CLOBOL_04909 [Clostridium bolteae ATCC BAA-613] Length = 309 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETV----RGRRGG 63 S+IA+ IS + K+L+ GIV +G GG Sbjct: 23 SEIADRYGISRPMVSKLLKEARDRGIVTIRINAPKGESGG 62 >gi|113869335|ref|YP_727824.1| GntR family transcriptional regulator [Ralstonia eutropha H16] gi|113528111|emb|CAJ94456.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 258 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 17/86 (19%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ-------- 72 D + + + E ++ + + L L G+V+ G GG L +P + Sbjct: 37 GDKLPQEAALIEQMGVARGTVREALASLQAQGLVKVSTGPNGGATLTQPPYERCLEAVSN 96 Query: 73 ---------ITILDVVKATEESFFVA 89 +T+ + +A E Sbjct: 97 FLYFQSVDIVTLYALRRAVEPELAAN 122 >gi|14521903|ref|NP_127380.1| ArsR family transcriptional regulator [Pyrococcus abyssi GE5] gi|5459123|emb|CAB50609.1| Transcriptional regulatory protein, arsR family [Pyrococcus abyssi GE5] Length = 184 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 L+ RT + + D+P +S++AE + +++ ++ L KAG+VE V Sbjct: 17 LSDRTR-----MKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKAGLVEVV 66 >gi|13477068|ref|NP_108639.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14027832|dbj|BAB54425.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 388 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 23/83 (27%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV----RGRR-----------GGVR-- 65 P +IA ++ + I++ L + G + +V RGR GG Sbjct: 27 GPIARGEIASRVGLTVQTVSTIVRELEEQGYILSVREEPRGRGLPPATLRINPEGGYAVG 86 Query: 66 -----LCRPADQITI-LDVVKAT 82 L A I + DV+++T Sbjct: 87 IHITPLGINAALINLSGDVIEST 109 >gi|319793324|ref|YP_004154964.1| DeoR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595787|gb|ADU36853.1| transcriptional regulator, DeoR family [Variovorax paradoxus EPS] Length = 259 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 +L+ + + R+S +A +SE+ L + LQ + AG+++ V G G + L R + Sbjct: 10 HMLILKVLAQEGACRVSDMARRFTLSEMTLRRDLQEMHDAGLLKRVHG--GALPLGRDTE 67 >gi|303238182|ref|ZP_07324718.1| Helix-turn-helix type 11 domain protein [Acetivibrio cellulolyticus CD2] gi|302594228|gb|EFL63940.1| Helix-turn-helix type 11 domain protein [Acetivibrio cellulolyticus CD2] Length = 317 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66 MY + + +IS+IA + E + + L A +++ RG+ GG +L Sbjct: 10 MYILLQANGKMKISEIASLLEVDERSVRRYRDDLEVASILIDGERGKYGGYQL 62 >gi|302521498|ref|ZP_07273840.1| ArsR family transcriptional regulator [Streptomyces sp. SPB78] gi|302430393|gb|EFL02209.1| ArsR family transcriptional regulator [Streptomyces sp. SPB78] Length = 146 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++++ R Sbjct: 40 LRLLSMIASRAGGEVCVCDLIPAFDLSQPTISHHLKLLKQAGLIDSER 87 >gi|256111584|ref|ZP_05452579.1| transcriptional regulator, GntR family protein [Brucella melitensis bv. 3 str. Ether] gi|265993061|ref|ZP_06105618.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262763931|gb|EEZ09963.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 257 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + IAE IS + + K + LVKAG++ VR G + RP +++ Sbjct: 45 GEALPPERDIAEYTNISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95 >gi|225686308|ref|YP_002734280.1| GntR family transcriptional regulator [Brucella melitensis ATCC 23457] gi|256043406|ref|ZP_05446339.1| transcriptional regulator, GntR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256262555|ref|ZP_05465087.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260564613|ref|ZP_05835098.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|265989830|ref|ZP_06102387.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|225642413|gb|ACO02326.1| transcriptional regulator, GntR family protein [Brucella melitensis ATCC 23457] gi|260152256|gb|EEW87349.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|263000499|gb|EEZ13189.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092337|gb|EEZ16590.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|326410673|gb|ADZ67737.1| GntR family transcriptional regulator [Brucella melitensis M28] Length = 257 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + IAE IS + + K + LVKAG++ VR G + RP +++ Sbjct: 45 GEALPPERDIAEYTNISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95 >gi|206577843|ref|YP_002239874.1| hypothetical protein KPK_4070 [Klebsiella pneumoniae 342] gi|206566901|gb|ACI08677.1| hypothetical protein KPK_4070 [Klebsiella pneumoniae 342] Length = 255 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 20/40 (50%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + + + I + +S +++++L L + G + +G+ Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243 >gi|116694934|ref|YP_729145.1| GntR family transcriptional regulator [Ralstonia eutropha H16] gi|113529433|emb|CAJ95780.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 275 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 20/36 (55%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +A+A ++++ + + L + G++ + RGR Sbjct: 51 TVEHLAQAYGLAKVTVRQAFALLTEEGLISSQRGRG 86 >gi|86361296|ref|YP_473183.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86285398|gb|ABC94456.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 412 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++ IH P ++IA +++ + +I+ L+ G++ R R G Sbjct: 26 RAVVLRCIHRQAPISRAEIARQTGLTKPAIARIVDRLLDEGLIMEARRRHG 76 >gi|84494432|ref|ZP_00993551.1| putative transcriptional regulator [Janibacter sp. HTCC2649] gi|84383925|gb|EAP99805.1| putative transcriptional regulator [Janibacter sp. HTCC2649] Length = 122 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 14 LMYCAIHNDYPNRISQIAEA-CCISELFLFKILQPLVKAGIV 54 L+ A+ + P R S++ +SE L + L+ LV G V Sbjct: 30 LVLLALGDGEPLRWSELRRRAEGVSEKMLAQTLRTLVADGFV 71 >gi|119773338|ref|YP_926078.1| biotin--protein ligase [Shewanella amazonensis SB2B] gi|119765838|gb|ABL98408.1| Biotin--(acetyl-CoA-carboxylase) ligase [Shewanella amazonensis SB2B] Length = 317 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73 +AE IS + K + L G+ + +V+GR G +L P I Sbjct: 20 VSGEALAERLGISRAAISKHIDVLETLGLSIYSVKGR--GYKLATPVSLI 67 >gi|323528547|ref|YP_004230699.1| regulatory protein MarR [Burkholderia sp. CCGE1001] gi|323385549|gb|ADX57639.1| regulatory protein MarR [Burkholderia sp. CCGE1001] Length = 140 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + P + Q+AE + L +I+QPL + G+V + Sbjct: 44 LQRTGPMTMKQLAETMRMQRTTLVRIVQPLRRNGLVLS 81 >gi|282883085|ref|ZP_06291685.1| biotin-(acetyl-CoA-carboxylase) ligase [Peptoniphilus lacrimalis 315-B] gi|281297062|gb|EFA89558.1| biotin-(acetyl-CoA-carboxylase) ligase [Peptoniphilus lacrimalis 315-B] Length = 327 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCRP 69 VL + ++A+ IS ++K + L G + +T RG +L Sbjct: 7 VLQELEKNRGIYISGQELADRLKISRTAIWKAINALKSDGFIIDSQTKRG----YKLDDA 62 Query: 70 ADQITI 75 +D I++ Sbjct: 63 SDMISV 68 >gi|262196919|ref|YP_003268128.1| MarR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080266|gb|ACY16235.1| transcriptional regulator, MarR family [Haliangium ochraceum DSM 14365] Length = 366 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%) Query: 7 TDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 +R VL+ P S +AEA + +IL+ L AG+V++ Sbjct: 85 GRLALRQEWREVLVLL---RGGPRLPSDLAEALHKDRPTVTRILKKLRAAGLVQS 136 >gi|261884250|ref|ZP_06008289.1| transcriptional regulator, TrmB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 110 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P +IAE I + K+L+ L +AG VE Sbjct: 24 KEGPLSAGEIAERSAIGQPQASKLLRVLSEAGFVE 58 >gi|238061146|ref|ZP_04605855.1| TraR protein [Micromonospora sp. ATCC 39149] gi|237882957|gb|EEP71785.1| TraR protein [Micromonospora sp. ATCC 39149] Length = 273 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%) Query: 2 HLTKRTDY---GIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + + Y +R+ A D +Q++ +S K LQ LV G+V Sbjct: 19 RVDTKPRYEQVALRLRGRIASGELSPGDRMPSENQLSTEMDVSRDVARKALQLLVNEGLV 78 Query: 55 ETVRGRRGGVR 65 E++ GR+ G R Sbjct: 79 ESL-GRQQGYR 88 >gi|268590980|ref|ZP_06125201.1| transcriptional regulator, GntR family [Providencia rettgeri DSM 1131] gi|291313781|gb|EFE54234.1| transcriptional regulator, GntR family [Providencia rettgeri DSM 1131] Length = 256 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----CRPA--- 70 I D + ++ E S+ + + L+ L G+++T G GG + R Sbjct: 34 IPGDRLPQEKELIEHYNASKSTVREALKSLEVQGLIKTKTGPGGGAFIDSMTEARAMSLL 93 Query: 71 ------DQITILDVV 79 I+I D+ Sbjct: 94 SNYLFTRDISIKDIY 108 >gi|206901838|ref|YP_002251431.1| hypothetical protein DICTH_1618 [Dictyoglomus thermophilum H-6-12] gi|206740941|gb|ACI19999.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 194 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M LT+R + L N P ++IA+ +S + I+Q L K G ++ + Sbjct: 1 MSLTERRRQFLETLKTLYEKNKRPIHYAEIAKELSVSPATAYDIMQILYKEGYIDAI 57 >gi|220911710|ref|YP_002487019.1| ArsR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858588|gb|ACL38930.1| transcriptional regulator, ArsR family [Arthrobacter chlorophenolicus A6] Length = 118 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 4 TKRTDYGIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 + D L A + P ++++AE IS+ + K +Q L +A +V Sbjct: 5 STALDSAFLALADPVRRSIIARLSRGPATVNELAEPFEISKQAVSKHIQVLEQAQLVTRT 64 Query: 58 R 58 R Sbjct: 65 R 65 >gi|169237631|ref|YP_001690834.1| hypothetical protein OE6046F [Halobacterium salinarum R1] gi|167728408|emb|CAP15220.1| hypothetical protein OE6046F [Halobacterium salinarum R1] Length = 307 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + IS++A SE +L + + LV+ G+V T R Sbjct: 14 DRGDTISELATKLNHSESYLSRAVADLVEKGLVYTER 50 >gi|28870419|ref|NP_793038.1| GntR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213969884|ref|ZP_03398018.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] gi|301386255|ref|ZP_07234673.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato Max13] gi|28853666|gb|AAO56733.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213925432|gb|EEB58993.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] gi|331019285|gb|EGH99341.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 244 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + ++ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIASVADVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|83949466|ref|ZP_00958199.1| transcriptional regulator, GntR family protein [Roseovarius nubinhibens ISM] gi|83837365|gb|EAP76661.1| transcriptional regulator, GntR family protein [Roseovarius nubinhibens ISM] Length = 242 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++++ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELSDQFQVSRPTVREALKRLAAQSLIRTQRGATGG 73 >gi|325264229|ref|ZP_08130961.1| two-component response regulator [Clostridium sp. D5] gi|324030713|gb|EGB91996.1| two-component response regulator [Clostridium sp. D5] Length = 496 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 17/35 (48%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 L Y A H + ++A++ I+ +L ++ + Sbjct: 397 ALTYIAEHYAEIISLKEVADSIHINTDYLTRLFKK 431 >gi|322370320|ref|ZP_08044879.1| biotin--[acetyl-CoA-carboxylase] ligase [Haladaptatus paucihalophilus DX253] gi|320550028|gb|EFW91683.1| biotin--[acetyl-CoA-carboxylase] ligase [Haladaptatus paucihalophilus DX253] Length = 342 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%) Query: 12 RVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R ++ A D P ++A++ IS ++K ++ L AG +E+ G L Sbjct: 6 RAVLDALA---DGPVSGPELADSLDISRNAIWKHVEALRTAGFEIEST---SDGYLL 56 >gi|302545135|ref|ZP_07297477.1| putative IclR-family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462753|gb|EFL25846.1| putative IclR-family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 253 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR-G 62 + + +R+L A H+ S IA + L ++L+ L + G VE + G G Sbjct: 12 RSVRHALRILEVVARHSSG-VSHSGIARETRLPSDRLVELLRMLRREGYVEQIADGAYIG 70 Query: 63 GVRLC 67 G L Sbjct: 71 GASLT 75 >gi|255655191|ref|ZP_05400600.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451176|ref|ZP_06892917.1| sigma-54 dependent transcriptional regulator [Clostridium difficile NAP08] gi|296880472|ref|ZP_06904434.1| sigma-54 dependent transcriptional regulator [Clostridium difficile NAP07] gi|296259997|gb|EFH06851.1| sigma-54 dependent transcriptional regulator [Clostridium difficile NAP08] gi|296428426|gb|EFH14311.1| sigma-54 dependent transcriptional regulator [Clostridium difficile NAP07] Length = 666 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 I E ISE + K+L L + G + + GR G Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651 >gi|255102770|ref|ZP_05331747.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile QCD-63q42] Length = 325 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 + ++++ +S ++K ++ L + G +E+V + G RL Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63 >gi|229917309|ref|YP_002885955.1| MarR family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468738|gb|ACQ70510.1| transcriptional regulator, MarR family [Exiguobacterium sp. AT1b] Length = 147 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 P Q+A+ + + + L+ LV G+V + RG Sbjct: 50 GPTPAGQLAQKQGVHKSAVSNRLKKLVDKGLVTSRRG 86 >gi|170749357|ref|YP_001755617.1| Crp/FNR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655879|gb|ACB24934.1| transcriptional regulator, Crp/Fnr family [Methylobacterium radiotolerans JCM 2831] Length = 250 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D P ++A+A I+ + + + ++ L AG++ +RGRR Sbjct: 184 DLPMTQPELADALGITSVHVNRTVRDLRAAGLI-ALRGRR 222 >gi|163787230|ref|ZP_02181677.1| transcriptional regulator, AsnC family protein [Flavobacteriales bacterium ALC-1] gi|159877118|gb|EDP71175.1| transcriptional regulator, AsnC family protein [Flavobacteriales bacterium ALC-1] Length = 156 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 12/65 (18%) Query: 1 MHLTKRTDYG-------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 M + + Y +R LM D I +IA IS + + L+ L K+G+ Sbjct: 1 MKINDKGVYIDGIDKKILRALM-----EDARTPILEIARNVGISGAAIHQRLKKLEKSGL 55 Query: 54 VETVR 58 + + Sbjct: 56 LAGSK 60 >gi|17989102|ref|NP_541735.1| GntR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|17984949|gb|AAL53999.1| transcriptional regulator, gntr family [Brucella melitensis bv. 1 str. 16M] gi|326553965|gb|ADZ88604.1| GntR family transcriptional regulator [Brucella melitensis M5-90] Length = 259 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + IAE IS + + K + LVKAG++ VR G + RP +++ Sbjct: 47 GEALPPERDIAEYTNISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 97 >gi|150015677|ref|YP_001307931.1| GntR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902142|gb|ABR32975.1| regulatory protein GntR, HTH [Clostridium beijerinckii NCIMB 8052] Length = 122 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ + + +A ++ + K L L + G+V + R Sbjct: 21 LRIVSGIYKAGEKLPSVRDMAGDAAVNPNTMQKALTELERTGLVFSQR 68 >gi|22538032|ref|NP_688883.1| cyclic nucleotide-binding domain-containing protein [Streptococcus agalactiae 2603V/R] gi|25011921|ref|NP_736316.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae NEM316] gi|76797871|ref|ZP_00780134.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae 18RS21] gi|77414216|ref|ZP_00790379.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae 515] gi|22534935|gb|AAN00756.1|AE014277_4 cyclic nucleotide-binding domain protein [Streptococcus agalactiae 2603V/R] gi|24413463|emb|CAD47541.1| Unknown [Streptococcus agalactiae NEM316] gi|76586774|gb|EAO63269.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae 18RS21] gi|77159742|gb|EAO70890.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae 515] Length = 214 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 17 CAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVE 55 AI +S +A++ +S L +++ +VK G+++ Sbjct: 153 LAIEEQGYFQLELSSLADSFGVSYRHLLRVIHDMVKEGLIQ 193 >gi|329936863|ref|ZP_08286542.1| MarR family transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303788|gb|EGG47672.1| MarR family transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 149 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 22/46 (47%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ A P +++AE +S +L L KAG VE VR Sbjct: 34 VLIIEAEQRGRPLTPARLAERVGLSPGATSILLGRLEKAGHVERVR 79 >gi|329925752|ref|ZP_08280538.1| ROK family protein [Paenibacillus sp. HGF5] gi|328939632|gb|EGG35977.1| ROK family protein [Paenibacillus sp. HGF5] Length = 386 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVRLCRPADQI 73 I N+ P + IA+ +S + +I+ L + G V + GR R + I Sbjct: 21 IKNEQPISRAVIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAGRG------RKSSLI 74 Query: 74 TILD 77 +LD Sbjct: 75 RLLD 78 >gi|328882267|emb|CCA55506.1| hypothetical protein SVEN_2220 [Streptomyces venezuelae ATCC 10712] Length = 129 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLC--- 67 RVL A + + RI IA C ++E + +I+ L + G + T GR R+ Sbjct: 19 RVLASIADNPNA--RIRDIAARCRLTERAVSRIIADLEQDGYLSHTREGRTNTYRIAPGK 76 Query: 68 --RPADQ 72 R + Sbjct: 77 ALRHPAE 83 >gi|325524690|gb|EGD02682.1| IclR family transcriptional regulator [Burkholderia sp. TJI49] Length = 129 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 11 IRVLMYC-AIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVR 65 +R L A+ + P+ +SQ+A I + L ++++ L G V RG G+ Sbjct: 9 LRALAVLEALASAGQPSTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIA 68 Query: 66 LCRPADQITIL 76 L A Q+ + Sbjct: 69 LGPRAAQLALA 79 >gi|323485477|ref|ZP_08090823.1| hypothetical protein HMPREF9474_02574 [Clostridium symbiosum WAL-14163] gi|323694468|ref|ZP_08108638.1| GntR family transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401125|gb|EGA93477.1| hypothetical protein HMPREF9474_02574 [Clostridium symbiosum WAL-14163] gi|323501456|gb|EGB17348.1| GntR family transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 493 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A +S + K L L + G V+T+ G+ Sbjct: 283 KQLARQYDVSISTVRKALSELEQRGFVKTLNGKG 316 >gi|302541673|ref|ZP_07294015.1| putative transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302459291|gb|EFL22384.1| putative transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 333 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 3 LTKRTDYG-----IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 +T+ T +R++ A ++++ R +IAE IS+ + ++L K GIV T Sbjct: 1 MTRTTRMATSDEQLRLMTRIARLYHEQGMRQPRIAEELHISQARVSRLLTQAAKLGIVRT 60 Query: 57 V 57 + Sbjct: 61 I 61 >gi|302062629|ref|ZP_07254170.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato K40] gi|302134005|ref|ZP_07259995.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 242 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + ++ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIASVADVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|282909628|ref|ZP_06317437.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282326202|gb|EFB56506.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] Length = 138 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 L+ AI + ++A+ C +S+ + + + L G+ + G+ GG ++ + + Sbjct: 9 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68 Query: 73 ITI 75 I + Sbjct: 69 IAL 71 >gi|302553187|ref|ZP_07305529.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302470805|gb|EFL33898.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 370 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+ Y A S++A+ ++ + + L L KAG+V T R RG L Sbjct: 299 MRMCRYLARSA---YTTSELAQTHGMTAPEISRHLAVLKKAGLVTTRR--RGRYVL 349 >gi|253579160|ref|ZP_04856430.1| DNA-binding transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251849258|gb|EES77218.1| DNA-binding transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 251 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D +++++ +S++ + K +Q L G V V+G+ Sbjct: 27 MPGDKLPTENELSDQYNVSKITIRKAIQNLSDEGYVNKVQGKG 69 >gi|257055891|ref|YP_003133723.1| transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585763|gb|ACU96896.1| transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 261 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ D + +L A P ++ +A + + ++L L K VE G RG Sbjct: 17 SQSVDRALSILTLLAQRG--PLGVTDLARHLGVHKSTATRLLATLEKFRFVE-QDGNRGK 73 Query: 64 VRLC 67 RL Sbjct: 74 FRLG 77 >gi|256396287|ref|YP_003117851.1| hypothetical protein Caci_7181 [Catenulispora acidiphila DSM 44928] gi|256362513|gb|ACU76010.1| hypothetical protein Caci_7181 [Catenulispora acidiphila DSM 44928] Length = 148 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 VL+ A + R+ I+ I+E I+ L +AG VE +R GRR L Sbjct: 18 HVLVEIARNPQA--RVRDISAIIGITERATQAIIADLERAGYVERLRIGRRTRYVL 71 >gi|227876839|ref|ZP_03994948.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|306817782|ref|ZP_07451523.1| probable DNA-binding protein [Mobiluncus mulieris ATCC 35239] gi|227842736|gb|EEJ52936.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|304649431|gb|EFM46715.1| probable DNA-binding protein [Mobiluncus mulieris ATCC 35239] Length = 499 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++L Y A H ++AE IS IL L+K G+V Sbjct: 442 KILDYLATHP--TASSRELAETAGISIGGTRAILNNLIKTGLVT 483 >gi|255657508|ref|ZP_05402917.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile QCD-23m63] gi|296452820|ref|ZP_06894507.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium difficile NAP08] gi|296879928|ref|ZP_06903900.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium difficile NAP07] gi|296258368|gb|EFH05276.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium difficile NAP08] gi|296429042|gb|EFH14917.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium difficile NAP07] Length = 325 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 + ++++ +S ++K ++ L + G +E+V + G RL Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63 >gi|254974721|ref|ZP_05271193.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092110|ref|ZP_05321588.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile CIP 107932] gi|255313847|ref|ZP_05355430.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516528|ref|ZP_05384204.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649629|ref|ZP_05396531.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682792|ref|YP_003214077.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile CD196] gi|260686390|ref|YP_003217523.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile R20291] gi|260208955|emb|CBA61986.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile CD196] gi|260212406|emb|CBE03257.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile R20291] Length = 666 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 I E ISE + K+L L + G + + GR G Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651 >gi|224369786|ref|YP_002603950.1| BirA [Desulfobacterium autotrophicum HRM2] gi|223692503|gb|ACN15786.1| BirA [Desulfobacterium autotrophicum HRM2] Length = 304 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73 M+ A ND +++ A IS + ++K ++ LV G +E+ G L Sbjct: 1 MHLAWANDKFVSGVEMSNALDISRVAVWKHIKTLVNEGYDIESSPR---GYGLA------ 51 Query: 74 TILDVVK 80 T D+V+ Sbjct: 52 TCRDLVR 58 >gi|254381385|ref|ZP_04996750.1| metal-dependent regulatory protein [Streptomyces sp. Mg1] gi|194340295|gb|EDX21261.1| metal-dependent regulatory protein [Streptomyces sp. Mg1] Length = 113 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IRVL D P + ++ + + L + L L ++GIV + R Sbjct: 22 IRVLELL---QDGPLPVRELLASIEVEPSALSQQLAVLRRSGIVTSSR 66 >gi|261405070|ref|YP_003241311.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281533|gb|ACX63504.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. Y412MC10] Length = 315 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 + ++ + ++A+ +S + + LQ L + G+ + + G GG ++ + Sbjct: 10 LMMTVNRMRKFTVRELADQFGVSSRTILRDLQELSELGVPLYSEVGPHGGYQVLKE 65 >gi|153011078|ref|YP_001372292.1| GntR domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151562966|gb|ABS16463.1| GntR domain protein [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A++ +S + + + L G+VET +G Sbjct: 40 LAQSFGVSRSVVREAIAQLRNEGLVETRQGVG 71 >gi|254241306|ref|ZP_04934628.1| hypothetical protein PA2G_02001 [Pseudomonas aeruginosa 2192] gi|126194684|gb|EAZ58747.1| hypothetical protein PA2G_02001 [Pseudomonas aeruginosa 2192] Length = 271 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVR 65 IR+L + + N P R IA I+ F IL+ LV +V+ + R G+ Sbjct: 34 AIRILRHLS-QNGAPERSVDIARRLSINPSTCFNILRTLVMEDVVDFNPMSKR-YSAGLG 91 Query: 66 LCR 68 L R Sbjct: 92 LAR 94 >gi|160899103|ref|YP_001564685.1| transcriptional regulator [Delftia acidovorans SPH-1] gi|160364687|gb|ABX36300.1| transcriptional regulator, GntR family with aminotransferase domain [Delftia acidovorans SPH-1] Length = 509 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 8/63 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 G+R + +A+ +S + + L G+V + RG G R Sbjct: 63 GLRA-------GSRLPSVRALAQQAGVSRDTVVQAYDRLAAQGLVHSRRG-SGVFVSARR 114 Query: 70 ADQ 72 A Q Sbjct: 115 AAQ 117 >gi|119720393|ref|YP_920888.1| biotin--acetyl-CoA-carboxylase ligase [Thermofilum pendens Hrk 5] gi|119525513|gb|ABL78885.1| biotin--acetyl-CoA-carboxylase ligase [Thermofilum pendens Hrk 5] Length = 322 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 RVL A Y R ++AE +S++ + + + L K G VE+ R G RL Sbjct: 9 RVLEVLARRGGY-VRGGELAEKLGVSKVAIHRAIVGLRKMGYVVESHPRR--GYRL 61 >gi|21219344|ref|NP_625123.1| GntR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|256789616|ref|ZP_05528047.1| GntR family transcriptional regulator [Streptomyces lividans TK24] gi|289773505|ref|ZP_06532883.1| GntR family transcriptional regulator [Streptomyces lividans TK24] gi|5459227|emb|CAB48900.1| putative gntR-family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289703704|gb|EFD71133.1| GntR family transcriptional regulator [Streptomyces lividans TK24] Length = 146 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++T+ +R+ + D ++ A I+ +F+ + + +AG+V + RG Sbjct: 21 QIVRQTEQALRMGVL--RVGDKLPTAKEVVAATAINPNTVFRAYRDMEQAGLVRSRRG-L 77 Query: 62 GGV---RLCRPADQ 72 G L RP + Sbjct: 78 GTFVTRSLARPGAE 91 >gi|148257826|ref|YP_001242411.1| hypothetical protein BBta_6602 [Bradyrhizobium sp. BTAi1] gi|146409999|gb|ABQ38505.1| hypothetical protein BBta_6602 [Bradyrhizobium sp. BTAi1] Length = 202 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +H +S+IA S + K + LV+AG +E G G Sbjct: 7 LDLHAGLWLSVSEIARQHGKSRQAIAKRVDSLVEAGKLEARPGPNG 52 >gi|319763250|ref|YP_004127187.1| gntr domain protein [Alicycliphilus denitrificans BC] gi|317117811|gb|ADV00300.1| GntR domain protein [Alicycliphilus denitrificans BC] Length = 276 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 15/115 (13%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR---------RGGVRL- 66 D S++ +S + + L L AG+VET G G+ L Sbjct: 63 LLREGDKLPTESELVRDYDVSRTVVREALSKLQAAGLVETRHGIGTFVLPARDGAGLTLD 122 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 R + ++ DV+ E + A LR AL AF Sbjct: 123 ARELSE-SV-DVLAVLELRISLETEAAGLAAQRRSSEH---LQALRDALQAFERH 172 >gi|311281332|ref|YP_003943563.1| transcriptional regulator, GntR family [Enterobacter cloacae SCF1] gi|308750527|gb|ADO50279.1| transcriptional regulator, GntR family [Enterobacter cloacae SCF1] Length = 228 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +AE +S + K + L + V T +G Sbjct: 31 LAERYGVSRPTIQKAVARLKRESFVHTRQGSG 62 >gi|300825618|ref|ZP_07105664.1| ROK family protein [Escherichia coli MS 119-7] gi|300521947|gb|EFK43016.1| ROK family protein [Escherichia coli MS 119-7] Length = 244 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 33/131 (25%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGRRG-------------G 63 P QIAE ++ + KI + L++ G+++ + GRR G Sbjct: 31 GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIG 90 Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123 VRL R IT+ D+ A P L L LNA + Sbjct: 91 VRLGRHDATITLFDLSSKV---------LAEEHYPLPERTQQTLEHAL---LNAIAQFID 138 Query: 124 QY--SIECLVR 132 Y + L+ Sbjct: 139 SYQRKLRELIA 149 >gi|228477355|ref|ZP_04061991.1| histidine kinase [Streptococcus salivarius SK126] gi|228250790|gb|EEK09978.1| histidine kinase [Streptococcus salivarius SK126] Length = 344 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 13/69 (18%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRG-GVRLCRPAD 71 A + IS E I +L KI + L + VET R G G G+ + R Sbjct: 262 LAQLTEQELTISVKDEGQGILPEYLEKIFKRLYR---VETSRNMKTGGHGLGLAIARELA 318 Query: 72 -----QITI 75 +IT+ Sbjct: 319 YQLGGEITV 327 >gi|166030710|ref|ZP_02233539.1| hypothetical protein DORFOR_00384 [Dorea formicigenerans ATCC 27755] gi|166029502|gb|EDR48259.1| hypothetical protein DORFOR_00384 [Dorea formicigenerans ATCC 27755] Length = 326 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 ++ +D Q+ + +S ++K ++ L K G +E VR R G RL D Sbjct: 5 ILRLLKESDDYISGQQMCDRFHVSRTAVWKAIEQLKKEGYEIEAVRNR--GYRLLESPDI 62 Query: 73 ITILDV 78 ++ ++ Sbjct: 63 MSEAEI 68 >gi|149187957|ref|ZP_01866253.1| transcriptional regulator, AraC family protein [Vibrio shilonii AK1] gi|148838353|gb|EDL55294.1| transcriptional regulator, AraC family protein [Vibrio shilonii AK1] Length = 316 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 L Y H P ++ IAE +S ++ ++ + Sbjct: 190 CLTYIDSHYMEPLTLTDIAERSGLSYHYVSRMFKR 224 >gi|89070275|ref|ZP_01157594.1| transcriptional regulator, Fnr-type [Oceanicola granulosus HTCC2516] gi|89044114|gb|EAR50275.1| transcriptional regulator, Fnr-type [Oceanicola granulosus HTCC2516] Length = 259 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 P S +AE C +S + + ++L+ L +AG+ GR Sbjct: 182 PLTQSDLAEVCGLSPIHVNRVLRDLREAGLCTFADGR 218 >gi|117928444|ref|YP_872995.1| condensin subunit ScpB [Acidothermus cellulolyticus 11B] gi|117648907|gb|ABK53009.1| condensin subunit ScpB [Acidothermus cellulolyticus 11B] Length = 205 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-----RRGGV 64 + +++ A D P ++ +A + E + + + L A + + RG GG Sbjct: 27 AVEAMLFVA---DEPVTVTAMAAVLGVPEPQVAEAVARLA-ASLADAGRGIELRQVAGGW 82 Query: 65 RL-CRPA 70 RL RPA Sbjct: 83 RLYTRPA 89 >gi|86145013|ref|ZP_01063345.1| Transcriptional regulator [Vibrio sp. MED222] gi|85837912|gb|EAQ56024.1| Transcriptional regulator [Vibrio sp. MED222] Length = 476 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +D I Q++E +S+ + + Q L G V +V + G R Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYR 71 >gi|99081288|ref|YP_613442.1| GntR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037568|gb|ABF64180.1| transcriptional regulator, GntR family [Ruegeria sp. TM1040] Length = 243 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++AE +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELAEQFQVSRATVREGLKRLAAQSLIRTQRGASGG 73 >gi|332652481|ref|ZP_08418226.1| putative regulatory protein PocR [Ruminococcaceae bacterium D16] gi|332517627|gb|EGJ47230.1| putative regulatory protein PocR [Ruminococcaceae bacterium D16] Length = 288 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58 ++Y H + QIA +S +L K+ Q L + + +R Sbjct: 183 AILYINQHCSEKLVVEQIAGHAGVSPRYLTKLFQKYLDLSISSYITFIR 231 >gi|313898593|ref|ZP_07832128.1| biotin--[acetyl-CoA-carboxylase] ligase [Clostridium sp. HGF2] gi|312956477|gb|EFR38110.1| biotin--[acetyl-CoA-carboxylase] ligase [Clostridium sp. HGF2] Length = 317 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR-----P 69 + P ++A+ +S + K++ L + G + + + G +L Sbjct: 10 ELEQNRTKPVSGQKLAQRLHVSRNAVCKMIHTLNEEGFEIASFPRK--GYQLAETSNKLS 67 Query: 70 ADQITIL 76 A+ I++ Sbjct: 68 AEAISVY 74 >gi|309779512|ref|ZP_07674273.1| toxin-antitoxin system, antitoxin component, ArsR family [Ralstonia sp. 5_7_47FAA] gi|308921753|gb|EFP67389.1| toxin-antitoxin system, antitoxin component, ArsR family [Ralstonia sp. 5_7_47FAA] Length = 118 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-PA 70 R + P +S++A+ IS + + L L +G+V + + G VR CR Sbjct: 21 RAM--LVQLVRGPASVSELAQPLDISLPAVMQHLAVLENSGLVRSE--KVGRVRTCRIEP 76 Query: 71 DQITILD 77 + +++ + Sbjct: 77 EALSLAE 83 >gi|295099983|emb|CBK89072.1| Transcriptional regulators [Eubacterium cylindroides T2-87] Length = 270 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +L D I E IS + K ++ L++ G + RG+ Sbjct: 32 ILTGILKEGDQMLPEVSICETLNISRSTVRKTMEMLIEDGYLIRRRGKG 80 >gi|253574146|ref|ZP_04851488.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846623|gb|EES74629.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 132 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 + + + I+ IS + K L+ L +AG+V + GR RL Sbjct: 24 LKLLSGQELPLKDISSRFPISRTAVSKHLRILAEAGLVRERKVGRETRYRLDADP 78 >gi|239932892|ref|ZP_04689845.1| GntR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 95 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVET-VRGRR 61 Q+AE +S + + L+ L + G+V T RG Sbjct: 44 RQLAEHFGVSRETVRQALRMLRRDGLVATDRRGSH 78 >gi|225571056|ref|ZP_03780073.1| hypothetical protein CLOHYLEM_07155 [Clostridium hylemonae DSM 15053] gi|225160137|gb|EEG72756.1| hypothetical protein CLOHYLEM_07155 [Clostridium hylemonae DSM 15053] Length = 309 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++Y + +AE +S +++ L L AGI V +G+ GG+RL Sbjct: 19 ILYL-LMERRDVTAGMLAERLEVSVRTIYRDLDALSAAGIPVYAQKGQGGGIRL 71 >gi|170694486|ref|ZP_02885639.1| transcriptional regulator, IclR family [Burkholderia graminis C4D1M] gi|170140620|gb|EDT08795.1| transcriptional regulator, IclR family [Burkholderia graminis C4D1M] Length = 261 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 G+R+L + A + ++ IA+A + ++L LV+ G V Sbjct: 6 GLRILDWLASQGEGAGLVA-IADALSLPRSTCHRLLTDLVEGGYVR 50 >gi|161521073|ref|YP_001584500.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352749|ref|YP_001948376.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345123|gb|ABX18208.1| transcriptional regulator, IclR family [Burkholderia multivorans ATCC 17616] gi|189336771|dbj|BAG45840.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 273 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66 + VL A P +SQ+A I + L ++++ L G V RG G+ L Sbjct: 21 ALAVLEALAS-GGQPYTLSQLAARLHIPKATLLRLIESLEARGYVIHMPDSRGHDRGIAL 79 Query: 67 CRPADQ 72 A Q Sbjct: 80 GPRAAQ 85 >gi|126701184|ref|YP_001090081.1| bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile 630] gi|255308591|ref|ZP_05352762.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile ATCC 43255] gi|115252621|emb|CAJ70464.1| BirA bifunctional protein (Includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase) [Clostridium difficile] Length = 325 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 + ++++ +S ++K ++ L + G +E+V + G RL Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63 >gi|27382971|ref|NP_774500.1| hypothetical protein blr7860 [Bradyrhizobium japonicum USDA 110] gi|27356144|dbj|BAC53125.1| blr7860 [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 R+L + ++A+AC +S +++ + L +G+ V RG GG RL Sbjct: 3 ASRMLSILTTLQARGQVTAPELAQACEVSVRTIYRDIDALAASGVPVYADRGAEGGYRL 61 >gi|117918641|ref|YP_867833.1| biotin--protein ligase [Shewanella sp. ANA-3] gi|117610973|gb|ABK46427.1| biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. ANA-3] Length = 319 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77 + +++ ++A +S + K + L G+ + +V+GR G +L P I Sbjct: 15 LSSEHFVSGEELATQLGVSRAAVSKHVDALEDYGVAIYSVKGR--GYKLANPISLIDSAR 72 Query: 78 VVKATEESFFVAECFASHKID 98 ++++ + CF +I Sbjct: 73 LIQSID-----NRCFYFDEIP 88 >gi|313632065|gb|EFR99163.1| helix-turn-helix type 11 domain-containing protein [Listeria seeligeri FSL N1-067] Length = 298 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 R+L + + S++AE +S +++ + L+ AG V + G+ GG Sbjct: 5 RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFM 59 >gi|313899055|ref|ZP_07832582.1| transcriptional regulator, GntR family [Clostridium sp. HGF2] gi|312956254|gb|EFR37895.1| transcriptional regulator, GntR family [Clostridium sp. HGF2] Length = 124 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + +A ++ + K Q L + G + + +G+ Sbjct: 32 NDKLPSVRAMASQIGVNPNTVAKAYQELEEHGYIYSEKGKG 72 >gi|295098895|emb|CBK87984.1| Predicted transcriptional regulator [Eubacterium cylindroides T2-87] Length = 314 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 I++LM ++A+ + + + + LV AG ++ V+GR GG L Sbjct: 8 IKMLMLL--KARGKMNTLELAKELETNPRNIREFKKELVTAGYNIQEVKGRYGGYYL 62 >gi|209518597|ref|ZP_03267416.1| transcriptional regulator, GntR family [Burkholderia sp. H160] gi|209500961|gb|EEA00998.1| transcriptional regulator, GntR family [Burkholderia sp. H160] Length = 243 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY ++A ++ L + + LV+AG+VE GR Sbjct: 31 APGDYLPSEGELASRFGVNRHTLRRAIDELVEAGLVERRHGRG 73 >gi|171321564|ref|ZP_02910499.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] gi|171093162|gb|EDT38375.1| transcriptional regulator, IclR family [Burkholderia ambifaria MEX-5] Length = 274 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|160881381|ref|YP_001560349.1| AraC family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430047|gb|ABX43610.1| transcriptional regulator, AraC family [Clostridium phytofermentans ISDg] Length = 292 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 9 YGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 Y + R++ Y + ++ + QIA +S +++ KI + Sbjct: 180 YAVKRIINYLMENYEHKISLDQIAHNMYLSPVYISKIFKE 219 >gi|94263024|ref|ZP_01286843.1| regulatory protein, MarR [delta proteobacterium MLMS-1] gi|93456567|gb|EAT06675.1| regulatory protein, MarR [delta proteobacterium MLMS-1] Length = 227 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +RVL A RISQ+A + I + +L L + G+V RG G Sbjct: 107 LRVLREIA--GAGRMRISQVANSLAIHQSTASNLLDKLEQRGLVARQRGGVG 156 >gi|66391268|ref|YP_238584.1| ORF013 [Staphylococcus phage Twort] gi|62637198|gb|AAX92309.1| ORF013 [Staphylococcus phage Twort] Length = 495 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAG-IVETV-RGRRGGV 64 ++AE IS L L+ L G IV + RG GG Sbjct: 24 TTKKELAEKLNISLSALTSNLKTLENEGKIVTSTKRGNNGGF 65 >gi|24216230|ref|NP_713711.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|24197488|gb|AAN50729.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] Length = 126 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 A + Q+AE IS + K L+ L KAG++ RGR Sbjct: 25 LATLRYGEVTVKQLAEPFAISLPAITKHLKVLEKAGLI--SRGR 66 >gi|56478360|ref|YP_159949.1| transcriptional regulator Dnr/Nnr type [Aromatoleum aromaticum EbN1] gi|56314403|emb|CAI09048.1| Transcriptional regulator, Dnr/Nnr type [Aromatoleum aromaticum EbN1] Length = 229 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 P IA ++ L +I LV AG++ TV G+ Sbjct: 179 PTSKQVIASRLNLTPETLSRIFHDLVNAGLI-TVHGKH 215 >gi|55376747|ref|YP_134598.1| cell division control protein 6 homolog 1 [Haloarcula marismortui ATCC 43049] gi|62286608|sp|Q5V6G0|CDC6C_HALMA RecName: Full=Cell division control protein 6 homolog 12; Short=CDC6 homolog 12 gi|55229472|gb|AAV44892.1| cell division control protein 6 homolog 1 [Haloarcula marismortui ATCC 43049] Length = 414 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 22/104 (21%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQI-------AEACCISELF---LFKILQPLVKAG 52 LT+ + ++ P R I AE I L + L L G Sbjct: 294 LTQHGHLVVYAMVTLDQEGKTPARTRDIRPRYTNFAEKAGIDPLVPRRMRDHLGELSMLG 353 Query: 53 IVETV---RGRRGG----VRLCRPADQITILDVVKATEESFFVA 89 I+ + GRRGG L + ++ A E++ Sbjct: 354 IISAIERNEGRRGGTYREYSLEMDPE-----MILAALEKTVDDV 392 >gi|119718282|ref|YP_925247.1| GntR family transcriptional regulator [Nocardioides sp. JS614] gi|119538943|gb|ABL83560.1| transcriptional regulator, GntR family [Nocardioides sp. JS614] Length = 242 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +R L+ A D +++++ +S + + L+ L +V T RG GG Sbjct: 29 LRSLIVGGQLA-PGDRLPSEAELSDLFGVSRSTVREALRALSSRDLVITTRGSTGG 83 >gi|326330297|ref|ZP_08196607.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium Broad-1] gi|325951834|gb|EGD43864.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium Broad-1] Length = 166 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 DYG+ + + D R++++A + L +++ L G++E Sbjct: 41 THFDYGVLAM--LSEAPDRTLRMTELAGYTNATLPRLSNVVKRLADRGLIE 89 >gi|322371751|ref|ZP_08046294.1| transcription repressor [Haladaptatus paucihalophilus DX253] gi|320548636|gb|EFW90307.1| transcription repressor [Haladaptatus paucihalophilus DX253] Length = 223 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY ++ + + P S+IAE ++ + +++ L G+++ R + GV L Sbjct: 8 DY-LKAIYTLQKEDGGPVATSEIAEYLGVTPPTVTSMIEKLTDRGLLD--REKYKGVELT 64 Query: 68 RPADQITILDVVK 80 + + + +V++ Sbjct: 65 PEGETVAL-EVLR 76 >gi|295398612|ref|ZP_06808643.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Aerococcus viridans ATCC 11563] gi|294973152|gb|EFG48948.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Aerococcus viridans ATCC 11563] Length = 333 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL----- 66 ++L Y H + + ++A+ +S ++K ++ L G E +R + G L Sbjct: 6 KLLAYFLDHPGHFHTGPELADHFQVSRNAIWKAVKQLETDGY-EIIRHPKNGYALENLNQ 64 Query: 67 CRPADQIT 74 QIT Sbjct: 65 AIDPGQIT 72 >gi|293611232|ref|ZP_06693530.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826483|gb|EFF84850.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 250 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 1 MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + ++ L+ + D Q+A + +S L + +Q L G++ + Sbjct: 1 MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLSSR 59 Query: 58 RG 59 RG Sbjct: 60 RG 61 >gi|288919885|ref|ZP_06414208.1| GntR domain protein [Frankia sp. EUN1f] gi|288348717|gb|EFC82971.1| GntR domain protein [Frankia sp. EUN1f] Length = 261 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 14/67 (20%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------------ADQIT 74 + +S L + L+ L G++ RG GG+ RP A + Sbjct: 46 DLVARFGVSRPSLREALRILEAEGLISVKRGVLGGIVAHRPNHRMTARTAALVLQARDVP 105 Query: 75 ILDVVKA 81 + DV +A Sbjct: 106 LADVYEA 112 >gi|228932075|ref|ZP_04094967.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827658|gb|EEM73400.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 326 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 +IA IS + + + L G+ + +GR GG + Sbjct: 30 TAQEIANQFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70 >gi|226312331|ref|YP_002772225.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226095279|dbj|BAH43721.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 220 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ + +++A +S + + L+ L G++E+V G Sbjct: 24 KAIIMLELKPGQRVNDNELAALFGVSRTPVREALKRLEDEGLIESVPGSH 73 >gi|159042050|ref|YP_001541302.1| regulatory protein ArsR [Caldivirga maquilingensis IC-167] gi|157920885|gb|ABW02312.1| regulatory protein ArsR [Caldivirga maquilingensis IC-167] Length = 104 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKI-LQPLVKAGIVETV 57 +R++ A++ +S IA+ +S L K+ L L KAG+V + Sbjct: 22 LRIIAILAMNGSLY--LSDIAKRLGVSRA-LAKVHLVKLQKAGLVRSS 66 >gi|187919092|ref|YP_001888123.1| IclR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717530|gb|ACD18753.1| transcriptional regulator, IclR family [Burkholderia phytofirmans PsJN] Length = 278 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGV 64 +R L P +SQ++ I + L ++++ L G V RG G+ Sbjct: 19 ALRALAVLEQLAGAGQPFSLSQLSLRLHIPKATLMRLIESLETQGYVMHLPDSRGTDRGI 78 Query: 65 RLCRPADQITI 75 L A Q+ + Sbjct: 79 TLGPKAAQLAL 89 >gi|52222871|gb|AAU34212.1| putative transcriptional regulator MppS [Streptomyces hygroscopicus] Length = 329 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ IS K L ++G+V T R R Sbjct: 240 CSTGELADRLGISLAGASKHAAVLRRSGLVTTSRNRN 276 >gi|78062858|ref|YP_372766.1| ArsR family transcriptional regulator [Burkholderia sp. 383] gi|77970743|gb|ABB12122.1| transcriptional regulator, ArsR family [Burkholderia sp. 383] Length = 118 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60 D + ++A +S + K ++ L KAG++ +RGR Sbjct: 27 LGRLRDGSLTVGELAAPYDVSLNAISKHVKTLEKAGLIRREIRGR 71 >gi|45656564|ref|YP_000650.1| ArsR family transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599799|gb|AAS69287.1| transcriptional regulator (ArsR family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 126 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 A + Q+AE IS + K L+ L KAG++ RGR Sbjct: 25 LATLRYGEVTVKQLAEPFAISLPAITKHLKVLEKAGLI--SRGR 66 >gi|158313512|ref|YP_001506020.1| regulatory protein GntR HTH [Frankia sp. EAN1pec] gi|158108917|gb|ABW11114.1| regulatory protein GntR HTH [Frankia sp. EAN1pec] Length = 275 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 D ++ E I+ L + L+ L G+V +RGR GG R+ P Sbjct: 33 RPGDRFPTEDELMEIFGIARTTLREALRILEAEGLVTVLRGRHGGPRVTSP 83 >gi|327542794|gb|EGF29256.1| Plasmid pRiA4b ORF-3-like protein [Rhodopirellula baltica WH47] Length = 298 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 5 KRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + Y L Y + P S+IAEA +S + ++++ L K G++ G Sbjct: 7 TQGRY----LSYIHAYTVGFGLPPAESEIAEAIGVSPPSVNQMMKTLQKKGLIHREPGV 61 >gi|309776016|ref|ZP_07671008.1| transcriptional regulator, GntR family [Erysipelotrichaceae bacterium 3_1_53] gi|308916298|gb|EFP62046.1| transcriptional regulator, GntR family [Erysipelotrichaceae bacterium 3_1_53] Length = 122 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 20/46 (43%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++ + + ++A ++ + + L L ++G+V + R Sbjct: 21 IVTDIYQPSQKIPSVRELAVEFGVNPNTVQRALSELERSGLVASER 66 >gi|302523013|ref|ZP_07275355.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302431908|gb|EFL03724.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 274 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R L+ + + + QI + +S + + + + L + G+V +V GGVR+ P Sbjct: 7 RELLVRHLRREGVLSVQQITQLFGVSHMTVRRDIAELERQGLVFSVP---GGVRIASP 61 >gi|282866127|ref|ZP_06275175.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE] gi|282559166|gb|EFB64720.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE] Length = 126 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++ + R Sbjct: 47 LRLLSMIASREGGEICVCDLTPAFDLSQPTISHHLKLLKQAGLIGSER 94 >gi|163816194|ref|ZP_02207562.1| hypothetical protein COPEUT_02378 [Coprococcus eutactus ATCC 27759] gi|158448614|gb|EDP25609.1| hypothetical protein COPEUT_02378 [Coprococcus eutactus ATCC 27759] Length = 253 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R + Y H + I+ IAE + +L K+ Sbjct: 144 VRAMDYVYDHLNERIEITGIAEFVGVERSYLSKLFHK 180 >gi|160932494|ref|ZP_02079884.1| hypothetical protein CLOLEP_01332 [Clostridium leptum DSM 753] gi|156868453|gb|EDO61825.1| hypothetical protein CLOLEP_01332 [Clostridium leptum DSM 753] Length = 232 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 18/33 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ EA +S + + +Q L GIV + +G+ Sbjct: 38 ELREAFSVSRSTVRQAVQRLSALGIVRSRQGKG 70 >gi|148975173|ref|ZP_01812097.1| Transcriptional regulator [Vibrionales bacterium SWAT-3] gi|145965097|gb|EDK30347.1| Transcriptional regulator [Vibrionales bacterium SWAT-3] Length = 475 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +D I Q++E +S+ + + Q L G V +V + G R Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYR 71 >gi|152997355|ref|YP_001342190.1| transcriptional regulator IclR [Marinomonas sp. MWYL1] gi|150838279|gb|ABR72255.1| Transcriptional regulator IclR [Marinomonas sp. MWYL1] Length = 260 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRG 59 RVL + ++ P + +A + I + + ++LQ L G V+T RG Sbjct: 15 RVLEIIELVSISERPLSPADLAFSLDIPKPSIHRLLQQLEADGFVQTDWRG 65 >gi|42601196|gb|AAS21297.1| putative efflux pump regulator TbtR [Pseudomonas stutzeri] Length = 259 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 ++ + ++ IA+ + + +I+ L +VET+ G GG R Sbjct: 25 IMRALGDNPQG-LSLAAIAQIVDLPRSTVQRIITALEAEYLVETL-GPSGGFR 75 >gi|32476915|ref|NP_869909.1| lexA repressor [Rhodopirellula baltica SH 1] gi|32447463|emb|CAD79052.1| probable lexA repressor [Rhodopirellula baltica SH 1] Length = 298 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 5 KRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + Y L Y + P S+IAEA +S + ++++ L K G++ G Sbjct: 7 TQGRY----LSYIHAYTVGFGLPPAESEIAEAIGVSPPSVNQMMKTLQKKGLIHREPGV 61 >gi|19551275|ref|NP_599277.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62388920|ref|YP_224322.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41324253|emb|CAF18593.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 563 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 AI+ P I +IA + L +L+ LV+AG+V Sbjct: 511 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVAT 550 >gi|330883004|gb|EGH17153.1| GntR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 200 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|318059613|ref|ZP_07978336.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318077596|ref|ZP_07984928.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 282 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R L+ + + + QI + +S + + + + L + G+V +V GGVR+ P Sbjct: 15 RELLVRHLRREGVLSVQQITQLFGVSHMTVRRDIAELERQGLVFSVP---GGVRIASP 69 >gi|271965973|ref|YP_003340169.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509148|gb|ACZ87426.1| Transcriptional regulators-like protein [Streptosporangium roseum DSM 43021] Length = 261 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 25/52 (48%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +L+ + + I ++A++ +S + ++ L + G+ + V GR Sbjct: 138 ALDILIRLSAATEDGLSIGELAQSAGVSSRNVTGLVDTLERDGLAQRVPGRH 189 >gi|229084354|ref|ZP_04216634.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44] gi|228698894|gb|EEL51599.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44] Length = 239 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D ++ E+ +S + + +Q L K G + G+ Sbjct: 28 QEHDKLPSERELCESHDVSRTTVRQTMQELEKEGYIYKKHGKG 70 >gi|154251894|ref|YP_001412718.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1] gi|154155844|gb|ABS63061.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1] Length = 145 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + +IAEA ++ L L+ L AG+V + R Sbjct: 57 VAGEGGLAAGEIAEALGVAPATLSFHLKELSHAGLVASRR 96 >gi|254977184|ref|ZP_05273656.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile QCD-66c26] gi|255316265|ref|ZP_05357848.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile QCD-76w55] gi|255518926|ref|ZP_05386602.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile QCD-97b34] gi|255652105|ref|ZP_05399007.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile QCD-37x79] gi|260685078|ref|YP_003216363.1| BirA bifunctional protein [Clostridium difficile CD196] gi|260688736|ref|YP_003219870.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile R20291] gi|306521839|ref|ZP_07408186.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile QCD-32g58] gi|260211241|emb|CBA66767.1| BirA bifunctional protein [Clostridium difficile CD196] gi|260214753|emb|CBE07449.1| BirA bifunctional protein [Clostridium difficile R20291] Length = 325 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72 + ++++ +S ++K ++ L + G +E+V + G RL Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63 >gi|314922919|gb|EFS86750.1| putative histidine utilization repressor [Propionibacterium acnes HL001PA1] gi|314966369|gb|EFT10468.1| putative histidine utilization repressor [Propionibacterium acnes HL082PA2] gi|314980890|gb|EFT24984.1| putative histidine utilization repressor [Propionibacterium acnes HL110PA3] gi|315090171|gb|EFT62147.1| putative histidine utilization repressor [Propionibacterium acnes HL110PA4] gi|315093515|gb|EFT65491.1| putative histidine utilization repressor [Propionibacterium acnes HL060PA1] gi|315103096|gb|EFT75072.1| putative histidine utilization repressor [Propionibacterium acnes HL050PA2] gi|327326968|gb|EGE68749.1| transcription regulator, GntR family [Propionibacterium acnes HL103PA1] Length = 241 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61 >gi|308069031|ref|YP_003870636.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858310|gb|ADM70098.1| Transcriptional regulator [Paenibacillus polymyxa E681] Length = 150 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 R+L Y ++ P I +I+ + + L IL L KAG + Sbjct: 41 RILFYLWTKDEIP--IHEISRITNLQKSTLTSILTKLEKAGHI 81 >gi|294671269|ref|ZP_06736121.1| hypothetical protein NEIELOOT_02978 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306996|gb|EFE48239.1| hypothetical protein NEIELOOT_02978 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 133 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 22/41 (53%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L ++ P+ ++++AEA + + + L L +AG+V Sbjct: 59 LAVLCKLHERPHNVTELAEAAGLPQAAMSSQLALLREAGLV 99 >gi|289644364|ref|ZP_06476447.1| transcriptional regulator, HxlR family [Frankia symbiont of Datisca glomerata] gi|289505839|gb|EFD26855.1| transcriptional regulator, HxlR family [Frankia symbiont of Datisca glomerata] Length = 141 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVE 55 + +G+ VL A P R ++ + ISE L + L+ LV+ G+VE Sbjct: 39 SRWGVLVLTGLAT---GPLRFHELRTKIEGISEKMLSQTLRTLVRDGLVE 85 >gi|288556273|ref|YP_003428208.1| hypothetical protein BpOF4_16355 [Bacillus pseudofirmus OF4] gi|288547433|gb|ADC51316.1| hypothetical protein BpOF4_16355 [Bacillus pseudofirmus OF4] Length = 325 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 R+L + ++ + ++A ++E + + + L AGI V RG+ GG + Sbjct: 5 RLLSILFSLQQNEKMTTKELATQLEVTERTIHRDMDALSAAGIPVFAERGKYGGWK 60 >gi|282854350|ref|ZP_06263687.1| putative histidine utilization repressor [Propionibacterium acnes J139] gi|282583803|gb|EFB89183.1| putative histidine utilization repressor [Propionibacterium acnes J139] Length = 251 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 31 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 71 >gi|257465161|ref|ZP_05629532.1| fatty acid metabolism regulator [Actinobacillus minor 202] gi|257450821|gb|EEV24864.1| fatty acid metabolism regulator [Actinobacillus minor 202] Length = 241 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 18/33 (54%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++AE ++ L ++LQ L + G ++ G+ Sbjct: 39 RELAERIGVTRTTLREVLQRLARDGWLQIQHGK 71 >gi|284174552|ref|ZP_06388521.1| hypothetical protein Ssol98_07807 [Sulfolobus solfataricus 98/2] gi|261601973|gb|ACX91576.1| regulatory protein MarR [Sulfolobus solfataricus 98/2] Length = 299 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD- 77 + P +++++ +S+ L ++L L K GIV+ + L + ++++ Sbjct: 11 LKEKGPISQTELSKLSGLSKSRLSEVLSELEKQGIVKRRK------VLGKNL-EVSLSQD 63 Query: 78 ------VVKATEESFFV 88 +++A E F + Sbjct: 64 RFLRLGIIRAAEYPFII 80 >gi|226360187|ref|YP_002777965.1| GntR family transcriptional regulator [Rhodococcus opacus B4] gi|226238672|dbj|BAH49020.1| putative GntR family transcriptional regulator [Rhodococcus opacus B4] Length = 245 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 A + ++AEA +S + + +Q L +AG+VE +G Sbjct: 27 DLAA-GEALPSERRLAEAFGVSRPAVREAIQKLAQAGLVEVRQG 69 >gi|255306090|ref|ZP_05350262.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile ATCC 43255] Length = 666 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 I E ISE + K+L L + G + + GR G Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651 >gi|255100201|ref|ZP_05329178.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile QCD-63q42] Length = 666 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 I E ISE + K+L L + G + + GR G Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651 >gi|225017185|ref|ZP_03706377.1| hypothetical protein CLOSTMETH_01111 [Clostridium methylpentosum DSM 5476] gi|224950104|gb|EEG31313.1| hypothetical protein CLOSTMETH_01111 [Clostridium methylpentosum DSM 5476] Length = 295 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M LT++ +L Y H P +A A +S + K + L + G + Sbjct: 1 MKLTRKQ---FEILTYLEKHR-APITQRDLARATGMSLGSVNKTITQLTECGYL 50 >gi|169835530|ref|ZP_02868718.1| transcriptional regulator, DeoR family protein [candidate division TM7 single-cell isolate TM7a] Length = 202 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + N+ +++ +AE +SE+ + K L+ L + G ++ GG L + Sbjct: 14 LENEKKVKVTDLAEKFNVSEVIIRKNLKRLEQEGKLKRT---HGGAILLKE 61 >gi|220921980|ref|YP_002497281.1| Crp/Fnr family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946586|gb|ACL56978.1| transcriptional regulator, Crp/Fnr family [Methylobacterium nodulans ORS 2060] Length = 249 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D P +++A+A ++ + + + LQ L AG+V T+RG R Sbjct: 183 DLPMTQTELADALGLTTVHVNRTLQELRSAGLV-TLRGGR 221 >gi|153835997|ref|ZP_01988664.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus AQ3810] gi|260900553|ref|ZP_05908948.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus AQ4037] gi|149750751|gb|EDM61496.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus AQ3810] gi|308106959|gb|EFO44499.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus AQ4037] Length = 278 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 16/38 (42%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 + V+ Y + + +AE IS L KIL L Sbjct: 172 LSVMGYLHQNYAEQFNLQDLAEQAGISTKQLSKILSRL 209 >gi|148559812|ref|YP_001259718.1| GntR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148371069|gb|ABQ61048.1| transcriptional regulator, GntR family [Brucella ovis ATCC 25840] Length = 460 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 18 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 63 >gi|150401414|ref|YP_001325180.1| phosphate uptake regulator, PhoU [Methanococcus aeolicus Nankai-3] gi|150014117|gb|ABR56568.1| phosphate uptake regulator, PhoU [Methanococcus aeolicus Nankai-3] Length = 272 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P IAE IS ++ K+++PLV I++ Sbjct: 20 EPETQDDIAEKLNISRRYVAKLIKPLVDEDIIK 52 >gi|126458969|ref|YP_001055247.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM 11548] gi|126248690|gb|ABO07781.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM 11548] Length = 313 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 R+L Y +IA I +F+ ++ L +AG+V +RGG R Sbjct: 258 RILAYLRERGGAYES--EIARDLGIPRTTVFRAVRRLEEAGLVIVE--KRGGRNFVR 310 >gi|126698782|ref|YP_001087679.1| putative sigma-54 dependent transcriptional regulator [Clostridium difficile 630] gi|115250219|emb|CAJ68040.1| Transcriptional regulator, sigma-54-dependent [Clostridium difficile] Length = 666 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 I E ISE + K+L L + G + + GR G Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651 >gi|118352502|ref|XP_001009522.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena thermophila] gi|89291289|gb|EAR89277.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena thermophila SB210] Length = 286 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 I I+ L KIL L K +++V+G Sbjct: 100 KDIGNKTGIATGTLTKILNQLKKKNWIKSVKGAN 133 >gi|39935325|ref|NP_947601.1| ArsR family transcriptional regulator ArsR1 [Rhodopseudomonas palustris CGA009] gi|39649177|emb|CAE27697.1| transcriptional regulator, ArsR family, ArsR1 [Rhodopseudomonas palustris CGA009] Length = 110 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 16/42 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H +IA + + + L L +AGIV + R Sbjct: 25 LVRHEPDGLAAGEIARQLDVPQNTMSAHLGILARAGIVRSER 66 >gi|84389405|ref|ZP_00991211.1| Transcriptional regulator [Vibrio splendidus 12B01] gi|84376920|gb|EAP93793.1| Transcriptional regulator [Vibrio splendidus 12B01] Length = 475 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +D I Q++E +S+ + + Q L G V +V + G R Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYR 71 >gi|76787375|ref|YP_330457.1| cyclic nucleotide-binding domain-containing protein [Streptococcus agalactiae A909] gi|77405670|ref|ZP_00782758.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae H36B] gi|77411558|ref|ZP_00787901.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae CJB111] gi|76562432|gb|ABA45016.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae A909] gi|77162412|gb|EAO73380.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae CJB111] gi|77175743|gb|EAO78524.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae H36B] Length = 214 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 17 CAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVE 55 AI +S +A++ +S L +++ +VK G+++ Sbjct: 153 LAIEEQGYFHLELSSLADSFGVSYRHLLRVIHDMVKEGLIQ 193 >gi|323484653|ref|ZP_08090015.1| hypothetical protein HMPREF9474_01766 [Clostridium symbiosum WAL-14163] gi|323694813|ref|ZP_08108968.1| GntR family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323402036|gb|EGA94372.1| hypothetical protein HMPREF9474_01766 [Clostridium symbiosum WAL-14163] gi|323501129|gb|EGB17036.1| GntR family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 123 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 9/100 (9%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + Q+A+ I+ + K L + G V+ R R + L AD+I Sbjct: 31 REGETLPSVRQLADDIGINMHTVNKAYSVLKQEGFVKLDRRRGAVISL--DADKIRA--- 85 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118 ++ E V + C V + ++ +AF Sbjct: 86 IREMERDLSVI----LARGACKNVSREEVHRLVDSIFDAF 121 >gi|291442702|ref|ZP_06582092.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291345597|gb|EFE72553.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 126 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + +S+ + L+ L +AG+V + R Sbjct: 47 LRLLSLIASHAGGEACVCDLIGPFDVSQPTISHHLKVLREAGLVGSER 94 >gi|269124675|ref|YP_003298045.1| Crp/Fnr family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309633|gb|ACY96007.1| transcriptional regulator, Crp/Fnr family [Thermomonospora curvata DSM 43183] Length = 243 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83 P R +A I+ L +IL+ L AG++ +V+GRR IT+ DV A E Sbjct: 178 PTRKHVLASRLNIAPETLSRILRDLSAAGLI-SVQGRR-----------ITLHDV-PALE 224 Query: 84 ESFFVA 89 + Sbjct: 225 ARLEMT 230 >gi|290962406|ref|YP_003493588.1| IclR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260651932|emb|CBG75062.1| putative IclR-family transcriptional regulator [Streptomyces scabiei 87.22] Length = 248 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H P + ++ + + + + + L L +AG + R Sbjct: 7 SLRILEAVAQHQ--PVTVGELTKLFGLPKSTVQRTLVTLNEAGWLRANR 53 >gi|320011702|gb|ADW06552.1| GntR domain protein [Streptomyces flavogriseus ATCC 33331] Length = 233 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD--V 78 R ++A+ +S + ++++ L +VE+ R RP ++ + D V Sbjct: 27 PGLVLRTDELAQRFDVSRTVVREVIRVLESMHLVESRRRVG---VTVRPTEEWNVYDPQV 83 Query: 79 VK 80 ++ Sbjct: 84 IR 85 >gi|256958502|ref|ZP_05562673.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis DS5] gi|256963058|ref|ZP_05567229.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis HIP11704] gi|257078184|ref|ZP_05572545.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis JH1] gi|294780762|ref|ZP_06746122.1| biotin-(acetyl-CoA-carboxylase) ligase [Enterococcus faecalis PC1.1] gi|307267877|ref|ZP_07549268.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX4248] gi|307273727|ref|ZP_07554954.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0855] gi|256948998|gb|EEU65630.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis DS5] gi|256953554|gb|EEU70186.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis HIP11704] gi|256986214|gb|EEU73516.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis JH1] gi|294452202|gb|EFG20644.1| biotin-(acetyl-CoA-carboxylase) ligase [Enterococcus faecalis PC1.1] gi|306509594|gb|EFM78637.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0855] gi|306515811|gb|EFM84333.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX4248] gi|315031929|gb|EFT43861.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0017] gi|315034150|gb|EFT46082.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX0027] gi|329568120|gb|EGG49940.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis TX1467] Length = 330 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A++ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQSLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|256760943|ref|ZP_05501523.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T3] gi|256682194|gb|EEU21889.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T3] Length = 330 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 24/93 (25%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ ++ VL ++A++ +S ++K + L K G + +V+ + Sbjct: 1 MSTKSQ----VLTLLMKQTPAFLSGEEMAQSLSLSRTAIWKAINELKKDGYQITSVQNK- 55 Query: 62 GGVRLCR-----------------PADQITILD 77 G RL + P IT+L+ Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87 >gi|322420904|ref|YP_004200127.1| ArsR family transcriptional regulator [Geobacter sp. M18] gi|320127291|gb|ADW14851.1| transcriptional regulator, ArsR family [Geobacter sp. M18] Length = 107 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQ 72 + P ++ IAE+ I++ + + L+ L AG+V+ R G L + A + Sbjct: 24 KNEPMSVNAIAESLGITQSAVSQHLRVLKSAGLVKDERR---GYWIYYELNKEALE 76 >gi|239980428|ref|ZP_04702952.1| putative transcriptional regulator [Streptomyces albus J1074] Length = 110 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 15 MYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + A+ P + +A +S + + L+ L AG V RGR GGV L Sbjct: 9 LLLALQTRRDPVTTTDLAAETGVSVRTVLRDLRWLQDAGFPVLVERGRWGGVTL 62 >gi|271969139|ref|YP_003343335.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512314|gb|ACZ90592.1| putative transcriptional regulator, ArsR family [Streptosporangium roseum DSM 43021] Length = 328 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 RVL+ A P +Q+ +S + L L +AG+V R RG Sbjct: 262 RVLLELA----GPATTTQLVTLLGLSLGTVGGHLAALRRAGLVTGSRTGRG 308 >gi|269127800|ref|YP_003301170.1| GntR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312758|gb|ACY99132.1| transcriptional regulator, GntR family [Thermomonospora curvata DSM 43183] Length = 251 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R DY ++++ +SE+ + + L G+VET RG Sbjct: 19 TRGDY---------PPGSRLPTLARLCRMHGVSEIVARQAIALLRGEGLVETRRGGG 66 >gi|227530355|ref|ZP_03960404.1| GntR family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227349716|gb|EEJ40007.1| GntR family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 127 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +Q+++ I+ + K + LV AG++E RGR Sbjct: 30 EGSQVPSTTQLSQQLHINPATVLKGMNILVDAGLIEKHRGRG 71 >gi|222153152|ref|YP_002562329.1| GntR family regulatory protein [Streptococcus uberis 0140J] gi|222113965|emb|CAR42240.1| GntR family regulatory protein [Streptococcus uberis 0140J] Length = 122 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + + AE ++ + + L + GIV + R Sbjct: 31 GDQLPTVREYAETAGVNPNTMQRAFTELEREGIVYSQR 68 >gi|194016944|ref|ZP_03055557.1| manganese [Bacillus pumilus ATCC 7061] gi|194011550|gb|EDW21119.1| manganese [Bacillus pumilus ATCC 7061] Length = 144 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G++ T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLILTPKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|110679485|ref|YP_682492.1| ROK family transcription regulator [Roseobacter denitrificans OCh 114] gi|109455601|gb|ABG31806.1| transcription regulator, ROK family FrcR, putative [Roseobacter denitrificans OCh 114] Length = 402 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 23/92 (25%) Query: 10 GIRV----LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR---GRRG 62 G+R L+ +H + S+IA +S + IL+ L G+V R GR G Sbjct: 18 GLRAYNERLILSVLHRNGQLPGSEIARQTKLSAQTVSVILRKLESDGLVTKGRPSKGRVG 77 Query: 63 ----------------GVRLCRPADQITILDV 78 G +L R + + D+ Sbjct: 78 KPSIPMALNPKGAISVGCKLGRRGSDVLLTDL 109 >gi|120402259|ref|YP_952088.1| helix-turn-helix, type 11 domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119955077|gb|ABM12082.1| Helix-turn-helix, type 11 domain protein [Mycobacterium vanbaalenii PYR-1] Length = 317 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 RVL + ++A ++ + + + L + G V G GG +L Sbjct: 7 RVLQLLGLLQSRRVWSGEELAGRLGVTTRSVRRDVDRLRELGYPVHASTGHGGGYQLG 64 >gi|29830264|ref|NP_824898.1| GntR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29607375|dbj|BAC71433.1| putative GntR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 252 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 15/36 (41%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 I +AE +S K L+ L G+V + G Sbjct: 35 SIKNLAEEWNVSTATAEKALRKLRNEGLVRGIHGIG 70 >gi|15889989|ref|NP_355670.1| GntR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157956|gb|AAK88455.1| transcriptional regulator, GntR family [Agrobacterium tumefaciens str. C58] Length = 238 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +A+ +S + + + L G VET +G Sbjct: 34 GDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGVG 74 >gi|83999844|emb|CAH60144.1| putative GntR-family transcriptional regulator [Streptomyces tenjimariensis] Length = 251 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 I +AE +S + K L+ L G+V + G Sbjct: 35 SIKNLAEEWKVSTATVEKALRKLRNEGLVRGIHGIG 70 >gi|56807361|ref|ZP_00365351.1| COG4465: Pleiotropic transcriptional repressor [Streptococcus pyogenes M49 591] Length = 214 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 155 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 200 >gi|332974963|gb|EGK11873.1| GntR family transcriptional regulator [Desmospora sp. 8437] Length = 126 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R+L + + ++A ++ + + L + GIVET RG+ Sbjct: 22 RILRRELAPGEKLPSVREMALESNVNPNTVQRTYSELERMGIVETRRGQG 71 >gi|330952878|gb|EGH53138.1| transcriptional regulator GntR [Pseudomonas syringae Cit 7] Length = 142 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+VET G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4] gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4] Length = 176 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVK 50 A I Q+AE +S +L +I + L K Sbjct: 69 AQREAAQVSIRQLAERAGVSNPYLSQIERGLRK 101 >gi|315230041|ref|YP_004070477.1| transcriptional regulator TrmB [Thermococcus barophilus MP] gi|315183069|gb|ADT83254.1| transcriptional regulator TrmB [Thermococcus barophilus MP] Length = 354 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 +Y I + ++ ++ + + L+ I+Q L++ G V+ GR T Sbjct: 24 VYLTIWTKNGATVKELLDSLDVHQPQLYNIIQSLIRKGFVKASAGR---------PRIYT 74 Query: 75 ILDVVKATE 83 D+V + Sbjct: 75 ATDIVSLID 83 >gi|297798408|ref|XP_002867088.1| hypothetical protein ARALYDRAFT_491137 [Arabidopsis lyrata subsp. lyrata] gi|297312924|gb|EFH43347.1| hypothetical protein ARALYDRAFT_491137 [Arabidopsis lyrata subsp. lyrata] Length = 287 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64 + P +++ + A S L +I++ LV G+ + V + G G Sbjct: 34 SSQPVTLTERSSAVSASPSHLRRIMRFLVHQGLFKEVPTKDGLATGY 80 >gi|293392506|ref|ZP_06636826.1| GntR family regulatory protein [Serratia odorifera DSM 4582] gi|291424908|gb|EFE98117.1| GntR family regulatory protein [Serratia odorifera DSM 4582] Length = 243 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D IA +S + + + LV++GI+ + RG Sbjct: 30 GDRLPTQKDIARQFDVSLIVVKQAWNALVESGIIASQRGTG 70 >gi|292654982|ref|YP_003534879.1| transcription repressor [Haloferax volcanii DS2] gi|291372853|gb|ADE05080.1| transcription repressor [Haloferax volcanii DS2] Length = 231 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY ++ + + P S IAE + + ++ L + G+V+ R + GV L Sbjct: 8 DY-LKAIYTLQMEQGPPVSTSDIAEYLGKTPPTVTSMVGKLEERGLVD--REKYKGVELT 64 Query: 68 RPADQITILDVVK 80 + + + +V++ Sbjct: 65 AEGETVAL-EVLR 76 >gi|288923255|ref|ZP_06417394.1| transcriptional regulator, ArsR family [Frankia sp. EUN1f] gi|288345399|gb|EFC79789.1| transcriptional regulator, ArsR family [Frankia sp. EUN1f] Length = 110 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 IR L ++ +S++ + L + L L +AG+V T + Sbjct: 22 IRALELL---SEREWSVSELVPEVGLEASHLSQQLGVLRRAGLVTTRKQGNTVFYAVASP 78 Query: 71 DQITILDVVKAT 82 + +T+L V ++ Sbjct: 79 EIVTLLAVARSI 90 >gi|266620734|ref|ZP_06113669.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM 13479] gi|288867635|gb|EFC99933.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM 13479] Length = 221 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 2 HLTKRTDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 ++ + YG + + Y ++ P I QIA +S ++L K+ + Sbjct: 112 KISTES-YGYIQKAVQYIELNYSQPITIPQIAGFVGVSSIYLTKLFK 157 >gi|317048825|ref|YP_004116473.1| GntR family transcriptional regulator [Pantoea sp. At-9b] gi|316950442|gb|ADU69917.1| transcriptional regulator, GntR family [Pantoea sp. At-9b] Length = 228 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 CAIH +++ +S + + L +AG+V+ Sbjct: 28 CAIHPGSLLSEKEVSARFNVSRQPVREAFIKLAEAGLVQ 66 >gi|302524651|ref|ZP_07276993.1| predicted protein [Streptomyces sp. AA4] gi|302433546|gb|EFL05362.1| predicted protein [Streptomyces sp. AA4] Length = 160 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 TDY VL+ A + R++ +A+A +S + ++++ +V G+V+ V+ Sbjct: 42 TDY--TVLVSLAEAPEGRLRLTDLAQATALSLSRISRVVEAMVGRGLVKKVK 91 >gi|91790927|ref|YP_551878.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gi|91700807|gb|ABE46980.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 274 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +AE +S + +++ L G+VET +G Sbjct: 46 RTMAEEFGVSRTVVREVISRLKSEGLVETRQGSG 79 >gi|50085009|ref|YP_046519.1| ArsR family transcriptional regulator [Acinetobacter sp. ADP1] gi|49530985|emb|CAG68697.1| putative transcriptional regulator (ArsR family) [Acinetobacter sp. ADP1] Length = 102 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +L Y A +SQI E I++ L + L L K+ +V T R Sbjct: 30 LLILCYLAKQE---LNVSQIEEKTNITQPTLSQQLMMLRKSDVVHTRR 74 >gi|39934057|ref|NP_946333.1| transcriptional regulator PcaR [Rhodopseudomonas palustris CGA009] gi|39647905|emb|CAE26425.1| putativetranscriptional regulator PcaR, IclR family [Rhodopseudomonas palustris CGA009] Length = 263 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 G+RV + P +S +A+AC + +IL L AG V + Sbjct: 25 GLRV-IEAFGAEKRPMTLSDVAKACGLPRATARRILLTLQSAGYVSS 70 >gi|332186680|ref|ZP_08388423.1| bacterial regulatory helix-turn-helix s, AraC family protein [Sphingomonas sp. S17] gi|332013332|gb|EGI55394.1| bacterial regulatory helix-turn-helix s, AraC family protein [Sphingomonas sp. S17] Length = 356 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 +R L+ + + P ++ IAE IS+ L + Q Sbjct: 237 LRALLIAQQNIETPLSVADIAERMKISKRQLERRFQ 272 >gi|319948794|ref|ZP_08022910.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea P4] gi|319437501|gb|EFV92505.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea P4] Length = 113 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGR 60 +R+L + A + E IS+ + L+ LV+AG +V RG+ Sbjct: 42 LRLLSHIAAQGCDSVCACDLLEVVDISQPTISHHLKKLVEAGLLVREQRGK 92 >gi|317487440|ref|ZP_07946227.1| bacterial transcriptional regulator [Bilophila wadsworthia 3_1_6] gi|316921299|gb|EFV42598.1| bacterial transcriptional regulator [Bilophila wadsworthia 3_1_6] Length = 273 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +A+A + + L +IL L + G V + G+ G L Sbjct: 31 LRDLAKASGLPKGTLQRILLTLCELGFV-SQDGKGGAYSLT 70 >gi|291545380|emb|CBL18488.1| AraC-type DNA-binding domain-containing proteins [Ruminococcus sp. SR1/5] Length = 175 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ---PLVKAGIVETVR 58 +++ DY + H RI ++AE C ISE L +I + + T+R Sbjct: 57 ISRFQDY-------ISDHYMEDLRIDELAEYCHISETHLRRIFTTYMKMSPLEYINTIR 108 >gi|289435702|ref|YP_003465574.1| hypothetical protein lse_2341 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171946|emb|CBH28492.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 298 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 R+L + + S++AE +S +++ + L+ AG V + G+ GG Sbjct: 5 RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFM 59 >gi|302558534|ref|ZP_07310876.1| secreted protein [Streptomyces griseoflavus Tu4000] gi|302476152|gb|EFL39245.1| secreted protein [Streptomyces griseoflavus Tu4000] Length = 408 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 16/31 (51%) Query: 31 AEACCISELFLFKILQPLVKAGIVETVRGRR 61 A + E + +++ L +AG+++ RG Sbjct: 58 ARRMDLPEGHVDRLVGRLSRAGLLDDSRGGG 88 >gi|254504530|ref|ZP_05116681.1| transcriptional regulator, GntR family protein [Labrenzia alexandrii DFL-11] gi|222440601|gb|EEE47280.1| transcriptional regulator, GntR family protein [Labrenzia alexandrii DFL-11] Length = 236 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-----RRGG 63 + + +AE IS L K L L + G++E ++G R+GG Sbjct: 31 LDGERLPPERDMAEELGISIGTLRKALADLTEKGLLERIQGSGNYIRQGG 80 >gi|209516298|ref|ZP_03265155.1| conserved hypothetical protein [Burkholderia sp. H160] gi|209503234|gb|EEA03233.1| conserved hypothetical protein [Burkholderia sp. H160] Length = 42 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 14/38 (36%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL 39 ++K DY + + A + +AEA I Sbjct: 3 RMSKLADYATVISITLARGPNAVKTARSLAEATGIPPP 40 >gi|254381587|ref|ZP_04996951.1| ArsR2 [Streptomyces sp. Mg1] gi|194340496|gb|EDX21462.1| ArsR2 [Streptomyces sp. Mg1] Length = 120 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 47 LRLFSLVASHEGGEACVCDISD-VGVSQPTVSHHLKKLREAGLLSSER 93 >gi|169631935|ref|YP_001705584.1| ArsR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243902|emb|CAM64930.1| Putative transcriptional regulator, ArsR family [Mycobacterium abscessus] Length = 127 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+ A H + I+ +S+ + L+ L AG++ + R Sbjct: 43 LRLFSLIASHAGGEACVCDISPGIEVSQPTISHHLKVLRNAGLLASERRAS 93 >gi|192289584|ref|YP_001990189.1| IclR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283333|gb|ACE99713.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris TIE-1] Length = 263 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 G+RV + P +S +A+AC + +IL L AG V + Sbjct: 25 GLRV-IEAFGAEKRPMTLSDVAKACGLPRATARRILLTLQSAGYVSS 70 >gi|116695780|ref|YP_841356.1| transcriptional regulator [Ralstonia eutropha H16] gi|113530279|emb|CAJ96626.1| transcriptional regulator [Ralstonia eutropha H16] Length = 252 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 21/104 (20%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 N P ++++AEA I + I+ L+ G + ++ R P +I DV Sbjct: 20 QANQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTRPRALY----PTRRI--YDV 73 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122 + E E T VL + +A + + Sbjct: 74 ARDITEKDPFVE---------------RATPVLERLRDATRETV 102 >gi|111020209|ref|YP_703181.1| IclR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819739|gb|ABG95023.1| transcriptional regulator, IclR family protein [Rhodococcus jostii RHA1] Length = 258 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPA 70 ++ +S++A+ + + ++++ LV G V T R L Sbjct: 22 ILELMASAGGAIGVSELADRAGLPLPTIHRLIRTLVDRGYVRQLPTRR-----YALG--P 74 Query: 71 DQITILD 77 I + D Sbjct: 75 KLIRLGD 81 >gi|17986453|ref|NP_539087.1| GntR family transcriptional regulator / aminotransferase class-I [Brucella melitensis bv. 1 str. 16M] gi|17982050|gb|AAL51351.1| transcriptional regulator, gntr family / aminotransferase class-i [Brucella melitensis bv. 1 str. 16M] Length = 484 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 42 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 87 >gi|47221257|emb|CAG13193.1| unnamed protein product [Tetraodon nigroviridis] Length = 1704 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 14/82 (17%) Query: 5 KRTDY-GIRVLMYCAIHN---DYPNRISQIAEACCI--------SELFLFKILQPLVKAG 52 +T Y +R+++ AI ++ I + + K L L+ G Sbjct: 409 TKTSYPTVRLMLLAAIKEMRTGKGTSVNAIFSYLHATYGYDFFKNRTHIRKTLAKLISEG 468 Query: 53 IVETVRGRR--GGVRLCRPADQ 72 +VE V+GR G RL + + Sbjct: 469 LVEQVKGRGLAGSFRLGKNYKE 490 >gi|85711224|ref|ZP_01042284.1| probable transcriptional regulator, ArsR family protein [Idiomarina baltica OS145] gi|85695137|gb|EAQ33075.1| probable transcriptional regulator, ArsR family protein [Idiomarina baltica OS145] Length = 115 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M L D R+L+ + ++ + +I + I + L + L L + +V T R Sbjct: 32 MQLLSHPD---RLLI-LCLLSEKEYSVGEIEKQLDIHQPMLSQHLNRLRQQSLVATRR 85 >gi|332639099|ref|ZP_08417962.1| AraC-like transcriptional regulator [Weissella cibaria KACC 11862] Length = 283 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 15/35 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 VLMY + ++AE + +L +I + Sbjct: 176 VLMYIHKQYQTKISLREVAERFHYNPDYLSRIFKR 210 >gi|330889774|gb|EGH22435.1| GntR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 244 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|330825445|ref|YP_004388748.1| GntR domain-containing protein [Alicycliphilus denitrificans K601] gi|329310817|gb|AEB85232.1| GntR domain protein [Alicycliphilus denitrificans K601] Length = 277 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 15/115 (13%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR---------RGGVRL- 66 D S++ +S + + L L AG+VET G G+ L Sbjct: 63 LLREGDKLPTESELVRDYDVSRTVVREALSKLQAAGLVETRHGIGTFVLPARDGAGLTLD 122 Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 R + ++ DV+ E + A LR AL AF Sbjct: 123 ARELSE-SV-DVLAVLELRISLETEAAGLAAQRRSSEH---LQALRDALQAFERH 172 >gi|327331184|gb|EGE72924.1| transcription regulator, GntR family [Propionibacterium acnes HL097PA1] Length = 241 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61 >gi|320532939|ref|ZP_08033700.1| transcriptional regulator, AraC family [Actinomyces sp. oral taxon 171 str. F0337] gi|320134848|gb|EFW27035.1| transcriptional regulator, AraC family [Actinomyces sp. oral taxon 171 str. F0337] Length = 275 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 12/42 (28%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 D +R Y H I ++ S L ++ Sbjct: 33 TSADLALRAARYLRTHFRERVTIGDLSACLAYSPSHLTRVFT 74 >gi|297182596|gb|ADI18755.1| biotin-(acetyl-CoA carboxylase) ligase [uncultured gamma proteobacterium HF4000_36I10] Length = 325 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L+ R+L A + + ++ A +S ++K LQ L G+ VE+V+G Sbjct: 1 MELS-------RLLAELA--DGGFHSGEELGVALGVSRTAIWKQLQKLDDVGLQVESVKG 51 Query: 60 RRGGVRL 66 R G RL Sbjct: 52 R--GYRL 56 >gi|302872635|ref|YP_003841271.1| transcriptional regulator, GntR family [Caldicellulosiruptor obsidiansis OB47] gi|302575494|gb|ADL43285.1| transcriptional regulator, GntR family [Caldicellulosiruptor obsidiansis OB47] Length = 128 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N+ + +++ I+ + K Q L + G + ++ G+ Sbjct: 31 ENEQLPSVRSLSKELTINPNTIQKAYQELEREGYIYSIPGKG 72 >gi|299772035|ref|YP_003734061.1| DNA-binding transcriptional repressor LldR [Acinetobacter sp. DR1] gi|298702123|gb|ADI92688.1| DNA-binding transcriptional repressor LldR [Acinetobacter sp. DR1] Length = 250 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 1 MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + ++ L+ + D Q+A + +S L + +Q L G++ + Sbjct: 1 MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLSSR 59 Query: 58 RG 59 RG Sbjct: 60 RG 61 >gi|260459265|ref|ZP_05807520.1| putative transcriptional regulator, Crp/Fnr family [Mesorhizobium opportunistum WSM2075] gi|259034819|gb|EEW36075.1| putative transcriptional regulator, Crp/Fnr family [Mesorhizobium opportunistum WSM2075] Length = 247 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 17/36 (47%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 Q+A + +L +++ L G++ET R R Sbjct: 174 VTQEQLATMLGVGRSYLSRVIHELRHRGVIETRRSR 209 >gi|258650314|ref|YP_003199470.1| IclR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553539|gb|ACV76481.1| transcriptional regulator, IclR family [Nakamurella multipartita DSM 44233] Length = 268 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 18 AIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 A P +S++A A ++ +IL L + G V R GG L Sbjct: 23 AFAPGRPVMSLSEVATATGLARPTARRILLTLSELGYV---RAAAGGFALT 70 >gi|222530211|ref|YP_002574093.1| GntR family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457058|gb|ACM61320.1| transcriptional regulator, GntR family [Caldicellulosiruptor bescii DSM 6725] Length = 128 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N+ + +++ I+ + K Q L + G + ++ G+ Sbjct: 31 ENEQLPSVRSLSKELTINPNTIQKAYQELEREGYIYSIPGKG 72 >gi|188590809|ref|YP_001795409.1| IclR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|170937703|emb|CAP62687.1| putative transcriptional regulator, IclR family [Cupriavidus taiwanensis LMG 19424] Length = 264 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 12 RVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 RVL A H+ P + ++ + + L++ L L + G V Sbjct: 30 RVLFVLAALAHHGAPITVRELVARTGLPKSTLYRQLMLLKRWGFV 74 >gi|163761686|ref|ZP_02168755.1| transcriptional regulator (GntR family) protein [Hoeflea phototrophica DFL-43] gi|162281109|gb|EDQ31411.1| transcriptional regulator (GntR family) protein [Hoeflea phototrophica DFL-43] Length = 261 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND +++A ++ + + L K GIV +GR Sbjct: 34 QANDRLPPEAELAARFGVNRHTVRSAIAALEKEGIVRAEQGRG 76 >gi|52079721|ref|YP_078512.1| phage-like protein [Bacillus licheniformis ATCC 14580] gi|52785089|ref|YP_090918.1| XkdB [Bacillus licheniformis ATCC 14580] gi|319646476|ref|ZP_08000705.1| XkdB protein [Bacillus sp. BT1B_CT2] gi|52002932|gb|AAU22874.1| phage related protein [Bacillus licheniformis ATCC 14580] gi|52347591|gb|AAU40225.1| XkdB [Bacillus licheniformis ATCC 14580] gi|317391064|gb|EFV71862.1| XkdB protein [Bacillus sp. BT1B_CT2] Length = 276 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 19/42 (45%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + P + +++A ++E + + L L + G + R G Sbjct: 56 GNKPLKAAELALQFGVNEKTIRRWLALLERNGYIAVTRAPYG 97 >gi|56962419|ref|YP_174145.1| GntR family transcriptional regulator [Bacillus clausii KSM-K16] gi|56908657|dbj|BAD63184.1| GntR family transcriptional regulator [Bacillus clausii KSM-K16] Length = 250 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 11/72 (15%) Query: 1 MHLTKR-TDYGIRV-----LMYCAIHNDYPNRI-----SQIAEACCISELFLFKILQPLV 49 M++ K+ TD + L+ YP + +++ + +S + LQ LV Sbjct: 1 MNVNKKGTDQSLHAFVKQELVTAIQQGVYPVKSQLPTEAELCKMYDVSRTTIRNALQQLV 60 Query: 50 KAGIVETVRGRR 61 G VE ++GR Sbjct: 61 IDGYVERIQGRG 72 >gi|54025318|ref|YP_119560.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016826|dbj|BAD58196.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 269 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 A P ++++A + +ILQ LV+ G VE Sbjct: 23 AFVGQRPLTLAELARRSNLPRSSAHRILQRLVELGWVE 60 >gi|86137946|ref|ZP_01056522.1| transcriptional regulator, AsnC family protein [Roseobacter sp. MED193] gi|85825538|gb|EAQ45737.1| transcriptional regulator, AsnC family protein [Roseobacter sp. MED193] Length = 165 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L + +D I +AE ++ L + L L +AGI+ R Sbjct: 22 RILRHM--QSDPEQSIPDLAERLGLTPSRLSRRLDKLREAGILLGQR 66 >gi|119025913|ref|YP_909758.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765497|dbj|BAF39676.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 92 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R ++ D ++AE IS+ L L L AG+V R Sbjct: 16 RRILELLRAGD--MTAGELAEHFDISKPSLSHHLATLRNAGLVTDER 60 >gi|332654407|ref|ZP_08420150.1| biotin-[acetyl-CoA-carboxylase] ligase [Ruminococcaceae bacterium D16] gi|332516371|gb|EGJ45977.1| biotin-[acetyl-CoA-carboxylase] ligase [Ruminococcaceae bacterium D16] Length = 335 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 VL + ++ IS ++K ++ L + G +++ G RL D Sbjct: 11 VLSLLLQQENQYVSGEAMSRTLGISRAAVWKAIEALRQEGYTIQSA--PNRGYRLDSAPD 68 Query: 72 QITILDVVKATEESFFVAECFASHKIDC 99 + V+ E S +A C K+ C Sbjct: 69 R------VREGELSGPLAGCHLGGKLLC 90 >gi|332159085|ref|YP_004424364.1| hypothetical protein PNA2_1445 [Pyrococcus sp. NA2] gi|331034548|gb|AEC52360.1| hypothetical protein PNA2_1445 [Pyrococcus sp. NA2] Length = 272 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL+Y A + ++I I ++IL+ L K G+V+ Sbjct: 210 VLLYIAEKGGRAKQ-AEIRNDLGIPRTTTWRILRRLEKEGLVK 251 >gi|328956497|ref|YP_004373883.1| putative transcriptional regulator [Carnobacterium sp. 17-4] gi|328672821|gb|AEB28867.1| putative transcriptional regulator [Carnobacterium sp. 17-4] Length = 782 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 R++ P +S++AE +S +L + + + G + Sbjct: 168 RIIQLIEQRYAEPLTLSELAEHENLSSSYLSRYFKQMTGMGFL 210 >gi|327311056|ref|YP_004337953.1| Riboflavin kinase [Thermoproteus uzoniensis 768-20] gi|326947535|gb|AEA12641.1| Riboflavin kinase [Thermoproteus uzoniensis 768-20] Length = 211 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L+ A P + A+A IS L K L+ L AG VE Sbjct: 12 LIALAGVEGLPPS--EAAKALGISRQGLHKALRRLRAAGYVE 51 >gi|319651252|ref|ZP_08005382.1| manganese transport transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317397032|gb|EFV77740.1| manganese transport transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 141 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I + R+S IAEA + + K++Q L K G++ T +G++ G R Sbjct: 13 IYMLIEDKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLILTPKGKKVGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|315648902|ref|ZP_07901996.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] gi|315275583|gb|EFU38937.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex V453] Length = 177 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 + ++AE +S + + L L G+ + G+ GG Sbjct: 21 TVGELAEEFSVSYRTMLRYLHELSHLGVPLYAHEGKNGGY 60 >gi|306845868|ref|ZP_07478436.1| GntR family transcriptional regulator [Brucella sp. BO1] gi|306273760|gb|EFM55598.1| GntR family transcriptional regulator [Brucella sp. BO1] Length = 257 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + IAE IS + + K + LVKAG++ VR G + RP +++ Sbjct: 45 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95 >gi|317152421|ref|YP_004120469.1| AraC type helix-turn-helix- domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942672|gb|ADU61723.1| helix-turn-helix- domain containing protein AraC type [Desulfovibrio aespoeensis Aspo-2] Length = 279 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 + A D + ++ IS L ++ +AG+ Sbjct: 184 HLAARLDERVSLDDLSALVGISRYHLLRVFS--REAGL 219 >gi|262200255|ref|YP_003271463.1| IclR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083602|gb|ACY19570.1| Transcriptional regulator IclR [Gordonia bronchialis DSM 43247] Length = 246 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLC 67 +RVL + + +S++A IS+ +++I L ++G++E R+G G RL Sbjct: 10 AVRVLEEFTV-SQSTLGVSELARRTGISKSSVYRITGDLEQSGLLE----RQGTGYRLG 63 >gi|260554105|ref|ZP_05826367.1| transcriptional repressor for L-lactate utilization [Acinetobacter sp. RUH2624] gi|260404783|gb|EEW98291.1| transcriptional repressor for L-lactate utilization [Acinetobacter sp. RUH2624] Length = 250 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 1 MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + ++ L+ + D Q+A + +S L + +Q L G++ + Sbjct: 1 MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLSSR 59 Query: 58 RG 59 RG Sbjct: 60 RG 61 >gi|259416317|ref|ZP_05740237.1| transcriptional regulator, GntR family [Silicibacter sp. TrichCH4B] gi|259347756|gb|EEW59533.1| transcriptional regulator, GntR family [Silicibacter sp. TrichCH4B] Length = 243 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ S++AE +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSESELAEQFQVSRATVREGLKRLAAQSLIRTQRGATGG 73 >gi|188591975|ref|YP_001796573.1| gntr family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|170938349|emb|CAP63334.1| putative TRANSCRIPTIONAL REGULATOR, GntR family [Cupriavidus taiwanensis LMG 19424] Length = 257 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 D S+I +S + + L L +G+VET G G L RPA+ Sbjct: 47 GDKLPTESEIMATMGVSRTVVREALSRLQASGLVETRHGI-GTFVLERPAE 96 >gi|170078485|ref|YP_001735123.1| putative replicative DNA helicase [Synechococcus sp. PCC 7002] gi|169886154|gb|ACA99867.1| putative replicative DNA helicase [Synechococcus sp. PCC 7002] Length = 715 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + + H +AEA + + K+L L GI+ Sbjct: 488 FLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGII 526 >gi|145294081|ref|YP_001136902.1| hypothetical protein cgR_0039 [Corynebacterium glutamicum R] gi|140844001|dbj|BAF53000.1| hypothetical protein [Corynebacterium glutamicum R] Length = 507 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 AI+ P I +IA + L +L+ LV+AG+V Sbjct: 455 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVAT 494 >gi|332796591|ref|YP_004458091.1| MarR family transcriptional regulator [Acidianus hospitalis W1] gi|332694326|gb|AEE93793.1| transcriptional regulator, MarR family [Acidianus hospitalis W1] Length = 84 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + A + I ++AE I + + K ++ L G VE Sbjct: 1 MTNLA---EGELSIKELAEYTGIPKKNIIKAMKSLENRGYVE 39 >gi|323494912|ref|ZP_08100004.1| transcriptional regulatory protein PtsJ [Vibrio brasiliensis LMG 20546] gi|323310876|gb|EGA64048.1| transcriptional regulatory protein PtsJ [Vibrio brasiliensis LMG 20546] Length = 432 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 +R L+ D + ++A ++ + + Q LVK+G+ ET +GR G Sbjct: 16 SVRCLIASGELKEGDALPPVRELAAEVGVNRNTVAGVYQRLVKSGLAET-KGRLG 69 >gi|317401215|gb|EFV81859.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 239 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +AE +S + ++ + L G++++ +G G V L R Q Sbjct: 37 LAEQYGVSAAVIREVTERLRAQGLIQSRQG-SGCVVLARTGAQ 78 >gi|302547660|ref|ZP_07300002.1| ROK family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465278|gb|EFL28371.1| ROK family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 425 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 13/90 (14%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGG 63 +R ++ + + +R ++IA ++ + + + LV GI+ E+VRGR Sbjct: 30 ALRSVLDLVVSGEATSR-AEIARRSGLARSTVGQQVDHLVGRGILQELGSSESVRGRP-- 86 Query: 64 VR---LCRPADQITILDVVKATEESFFVAE 90 R L A I + DV E +A+ Sbjct: 87 PRVLTLSPRAGTIAVADV-DTLESRVAIAD 115 >gi|300811558|ref|ZP_07092045.1| transcriptional regulator, GntR family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497464|gb|EFK32499.1| transcriptional regulator, GntR family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325685630|gb|EGD27715.1| transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 124 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ + ++A + + K L + G V +V+GR Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72 >gi|289627240|ref|ZP_06460194.1| GntR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650924|ref|ZP_06482267.1| GntR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866949|gb|EGH01658.1| GntR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 244 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|260906350|ref|ZP_05914672.1| GntR family transcriptional regulator [Brevibacterium linens BL2] Length = 473 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 14/34 (41%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A A +S + L + G V T RG Sbjct: 41 REVAAATGLSRTTATRAFAKLREQGFVHTRRGSG 74 >gi|229819480|ref|YP_002881006.1| transcriptional regulator, GntR family [Beutenbergia cavernae DSM 12333] gi|229565393|gb|ACQ79244.1| transcriptional regulator, GntR family [Beutenbergia cavernae DSM 12333] Length = 131 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 D I ++ E I+ + K + L + G+V + G G + P + + Sbjct: 32 RQGDQVPLIREVVEQLAINPNTVSKAYRQLEQEGLVRSRPGI-GTFVVGAPPEAV 85 >gi|213965640|ref|ZP_03393834.1| GntR family transcriptional regulator [Corynebacterium amycolatum SK46] gi|213951799|gb|EEB63187.1| GntR family transcriptional regulator [Corynebacterium amycolatum SK46] Length = 120 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 A N P +++E ++ K + L G+VE RG Sbjct: 27 ELAAENRAP-STKELSEFYQVNPTTAAKAMTELSMVGLVEKKRG 69 >gi|118443913|ref|YP_878800.1| GntR family transcriptional regulator [Clostridium novyi NT] gi|118134369|gb|ABK61413.1| transcription regulator, GntR family , putative [Clostridium novyi NT] Length = 242 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++E +S + + L L + G + RG+ Sbjct: 38 ELSEQYEVSRSTVRQTLSELERYGYIYKERGKG 70 >gi|117929011|ref|YP_873562.1| GntR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649474|gb|ABK53576.1| transcriptional regulator, GntR family [Acidothermus cellulolyticus 11B] Length = 246 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 18/33 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S + + +Q LV+ G++ RG Sbjct: 44 ELADRLGLSRPTMRRAIQELVRKGLLVRKRGVG 76 >gi|113968585|ref|YP_732378.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114049267|ref|YP_739817.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113883269|gb|ABI37321.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890709|gb|ABI44760.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 220 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y + S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMANPTKIVSKSELSERIYEEEQIKDSNVIEVYVNRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|326779956|ref|ZP_08239221.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1] gi|326660289|gb|EGE45135.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1] Length = 146 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 IRVL ++ + +S++ + L + L L +AG+V R G L P Sbjct: 36 IRVLELL---SEREHAVSEMLNEVGVEAAHLSQQLAVLRRAGLVTARREGSAVHYTLADP 92 Query: 70 ADQITILDVVKA 81 + ++++ Sbjct: 93 G----VAELLRV 100 >gi|325001521|ref|ZP_08122633.1| DeoR family transcriptional regulator [Pseudonocardia sp. P1] Length = 392 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +AE + + + + L G V + G GG RL Sbjct: 71 LAERLDVDVRTVRRDVDKLRTLGYPVHSTPGTTGGYRLG 109 >gi|323496311|ref|ZP_08101369.1| DeoR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323318588|gb|EGA71541.1| DeoR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 245 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 16/84 (19%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRLCRPADQI--- 73 ++ ++Q+A+ S+ + + + L G+V + GR GG++L + Sbjct: 19 SLRRQGTTTVAQLAQDVGASKRTILRDISALRDEGVVIYSEPGRGGGLQL--DPRSVQTR 76 Query: 74 ---TILDVVKATEESFFVAECFAS 94 ++ +V F + C AS Sbjct: 77 VRLSVSEV-------FALVVCVAS 93 >gi|319784219|ref|YP_004143695.1| histidine utilization repressor [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170107|gb|ADV13645.1| histidine utilization repressor [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 244 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +++ S + + K L L KAG++E R R G RP Q +L++ Sbjct: 42 ELSVQYNCSRMTVNKALSQLAKAGLIE-RRRRSGSFV-RRPQSQAAVLEI 89 >gi|307947018|ref|ZP_07662353.1| AraC family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307770682|gb|EFO29908.1| AraC family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 329 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 15/67 (22%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC-RPADQI------TI 75 P ++ IA +S L ++ + T + G R L + A QI +I Sbjct: 229 PVSVADIAGQVNLSPRHLERVFKH-------STGQNPSGYFRHLRMKAARQIIMYTNDSI 281 Query: 76 LDVVKAT 82 DV A Sbjct: 282 GDVAAAV 288 >gi|296534463|ref|ZP_06896894.1| IclR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265212|gb|EFH11406.1| IclR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 269 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 IR+L + A P ++ +A IS F IL+ L +A V Sbjct: 24 AIRILRHLAGAT-APLGVAAVARGTGISPSTCFNILRTLARARFV 67 >gi|291452430|ref|ZP_06591820.1| ArsR-family transcriptional regulator [Streptomyces albus J1074] gi|291355379|gb|EFE82281.1| ArsR-family transcriptional regulator [Streptomyces albus J1074] Length = 131 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++ + R Sbjct: 52 LRLLSMIASRAGGEVCVCDLTPAFALSQPTISHHLKLLRQAGLIASER 99 >gi|290962405|ref|YP_003493587.1| repressor of aceBA operon [Streptomyces scabiei 87.22] gi|260651931|emb|CBG75061.1| putative repressor of aceBA operon [Streptomyces scabiei 87.22] Length = 249 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 M + T +R+L A H P + ++ + + + + L L +AG + R Sbjct: 1 MEMKSVTR-SLRILEAVARHQ--PVTVGELTRLFGLPKSTVQRTLVTLNEAGWLRANR 55 >gi|291455982|ref|ZP_06595372.1| transcriptional regulator, AraC family [Bifidobacterium breve DSM 20213] gi|291382391|gb|EFE89909.1| transcriptional regulator, AraC family [Bifidobacterium breve DSM 20213] Length = 291 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R + Y H D + IA+A CIS +L ++ Sbjct: 184 RAVAYVQEHADETLSVQMIADALCISRGYLHQLFIK 219 >gi|225420145|ref|ZP_03762448.1| hypothetical protein CLOSTASPAR_06488 [Clostridium asparagiforme DSM 15981] gi|225041202|gb|EEG51448.1| hypothetical protein CLOSTASPAR_06488 [Clostridium asparagiforme DSM 15981] Length = 245 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 D + +A I+ + + L+ L + G V+ RGR G + R ++ Sbjct: 27 GDKLDSERVMAAQYGINRMTVRNALKALEEEGYVKAYRGR--GTFVARIPEE 76 >gi|194470914|ref|ZP_03076898.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358623|ref|ZP_02657915.2| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457278|gb|EDX46117.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333016|gb|EDZ19780.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 260 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +IAE ++ + + L L G+VE RG I +LD Sbjct: 31 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 78 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136 S E + C G L R+ L + Q + E +++ R + Sbjct: 79 ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 131 Query: 137 IK 138 ++ Sbjct: 132 LQ 133 >gi|239827566|ref|YP_002950190.1| GntR family transcriptional regulator [Geobacillus sp. WCH70] gi|239807859|gb|ACS24924.1| transcriptional regulator, GntR family [Geobacillus sp. WCH70] Length = 247 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE IS + + + + LV G + RG+ Sbjct: 37 RELAETYDISRMTVRQAINNLVNDGYLVRKRGKG 70 >gi|167033319|ref|YP_001668550.1| GntR domain-containing protein [Pseudomonas putida GB-1] gi|166859807|gb|ABY98214.1| GntR domain protein [Pseudomonas putida GB-1] Length = 249 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D SQI +S + + + L AG VET G GG R+ PA Sbjct: 36 RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPATGGFRI-DPA 94 Query: 71 DQITILDVVKATEESFFV 88 +T+ +V+ E + Sbjct: 95 TVVTLREVLAVLELRIAL 112 >gi|154252071|ref|YP_001412895.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1] gi|154156021|gb|ABS63238.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1] Length = 103 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ CA+ + ++A + L + L L G+V T R Sbjct: 30 RLLVLCALAVKGEASVGELAAEADLGMSALSQHLAKLRADGLVATRR 76 >gi|186476527|ref|YP_001857997.1| IclR family transcriptional regulator [Burkholderia phymatum STM815] gi|184192986|gb|ACC70951.1| transcriptional regulator, IclR family [Burkholderia phymatum STM815] Length = 278 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 G+ VL A D P ++ E I + + +I LV AG + Sbjct: 30 GLTVLRRIAA-ADAPLSNRELTELTGIPKPTVSRITATLVSAGFL 73 >gi|115373427|ref|ZP_01460725.1| transcriptional regulator, GntR family [Stigmatella aurantiaca DW4/3-1] gi|310822550|ref|YP_003954908.1| GntR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115369593|gb|EAU68530.1| transcriptional regulator, GntR family [Stigmatella aurantiaca DW4/3-1] gi|309395622|gb|ADO73081.1| Transcriptional regulator, GntR family [Stigmatella aurantiaca DW4/3-1] Length = 260 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H D ++AE +S + + K L+ L+ G+++ +G Sbjct: 43 HRDALPGERELAERFGVSRVTVRKALKELLDEGLLQQRQGAG 84 >gi|61102710|gb|AAX37827.1| pFQ25.11c [Streptomyces sp. F2] Length = 119 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 46 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 92 >gi|15897300|ref|NP_341905.1| hypothetical protein SSO0365 [Sulfolobus solfataricus P2] gi|13813509|gb|AAK40695.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] Length = 301 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD- 77 + P +++++ +S+ L ++L L K GIV+ + L + ++++ Sbjct: 13 LKEKGPISQTELSKLSGLSKSRLSEVLSELEKQGIVKRRK------VLGKNL-EVSLSQD 65 Query: 78 ------VVKATEESFFV 88 +++A E F + Sbjct: 66 RFLRLGIIRAAEYPFII 82 >gi|23500260|ref|NP_699700.1| GntR family transcriptional regulator [Brucella suis 1330] gi|62317623|ref|YP_223476.1| GntR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269606|ref|YP_418897.1| GntR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|148558784|ref|YP_001257482.1| GntR family transcriptional regulator [Brucella ovis ATCC 25840] gi|161620577|ref|YP_001594463.1| GntR family transcriptional regulator [Brucella canis ATCC 23365] gi|189022875|ref|YP_001932616.1| Bacterial regulatory protein, GntR family [Brucella abortus S19] gi|254691120|ref|ZP_05154374.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 6 str. 870] gi|254695574|ref|ZP_05157402.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 3 str. Tulya] gi|254698904|ref|ZP_05160732.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 2 str. 86/8/59] gi|254699762|ref|ZP_05161590.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 5 str. 513] gi|254702895|ref|ZP_05164723.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 3 str. 686] gi|254705983|ref|ZP_05167811.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis M163/99/10] gi|254711718|ref|ZP_05173529.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis B2/94] gi|254712333|ref|ZP_05174144.1| Bacterial regulatory protein, GntR family [Brucella ceti M644/93/1] gi|254715404|ref|ZP_05177215.1| Bacterial regulatory protein, GntR family [Brucella ceti M13/05/1] gi|254720473|ref|ZP_05182284.1| Bacterial regulatory protein, GntR family [Brucella sp. 83/13] gi|254732351|ref|ZP_05190929.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 4 str. 292] gi|256015293|ref|YP_003105302.1| transcriptional regulator, GntR family [Brucella microti CCM 4915] gi|256029649|ref|ZP_05443263.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis M292/94/1] gi|256059284|ref|ZP_05449486.1| Bacterial regulatory protein, GntR family [Brucella neotomae 5K33] gi|256256307|ref|ZP_05461843.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 9 str. C68] gi|260167263|ref|ZP_05754074.1| transcriptional regulator, GntR family protein [Brucella sp. F5/99] gi|260544857|ref|ZP_05820678.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260568190|ref|ZP_05838659.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260756719|ref|ZP_05869067.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260760149|ref|ZP_05872497.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260763387|ref|ZP_05875719.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882534|ref|ZP_05894148.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215969|ref|ZP_05930250.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261217134|ref|ZP_05931415.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261313417|ref|ZP_05952614.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261319345|ref|ZP_05958542.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261320005|ref|ZP_05959202.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261323238|ref|ZP_05962435.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750228|ref|ZP_05993937.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261753500|ref|ZP_05997209.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261756669|ref|ZP_06000378.1| bacterial regulatory protein [Brucella sp. F5/99] gi|265985500|ref|ZP_06098235.1| transcriptional regulator [Brucella sp. 83/13] gi|265986654|ref|ZP_06099211.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294853683|ref|ZP_06794355.1| GntR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297249665|ref|ZP_06933366.1| GntR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306839663|ref|ZP_07472466.1| GntR family transcriptional regulator [Brucella sp. NF 2653] gi|306840573|ref|ZP_07473329.1| GntR family transcriptional regulator [Brucella sp. BO2] gi|23463867|gb|AAN33705.1| transcriptional regulator, GntR family [Brucella suis 1330] gi|62197816|gb|AAX76115.1| transcriptional regulator, GntR family [Brucella abortus bv. 1 str. 9-941] gi|82939880|emb|CAJ12891.1| Bacterial regulatory protein, GntR family:Bacterial regulatory protein, DeoR family [Brucella melitensis biovar Abortus 2308] gi|148370069|gb|ABQ62941.1| transcriptional regulator, GntR family [Brucella ovis ATCC 25840] gi|161337388|gb|ABX63692.1| transcriptional regulator, GntR family [Brucella canis ATCC 23365] gi|189021449|gb|ACD74170.1| Bacterial regulatory protein, GntR family [Brucella abortus S19] gi|255997953|gb|ACU49640.1| transcriptional regulator, GntR family [Brucella microti CCM 4915] gi|260098128|gb|EEW82002.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260154855|gb|EEW89936.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260670467|gb|EEX57407.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673808|gb|EEX60629.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676827|gb|EEX63648.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872062|gb|EEX79131.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260917576|gb|EEX84437.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260922223|gb|EEX88791.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261292695|gb|EEX96191.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261298568|gb|EEY02065.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261299218|gb|EEY02715.1| transcriptional regulator [Brucella neotomae 5K33] gi|261302443|gb|EEY05940.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261736653|gb|EEY24649.1| bacterial regulatory protein [Brucella sp. F5/99] gi|261739981|gb|EEY27907.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261743253|gb|EEY31179.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|264658851|gb|EEZ29112.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264664092|gb|EEZ34353.1| transcriptional regulator [Brucella sp. 83/13] gi|294819338|gb|EFG36338.1| GntR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297173534|gb|EFH32898.1| GntR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306289440|gb|EFM60667.1| GntR family transcriptional regulator [Brucella sp. BO2] gi|306405243|gb|EFM61519.1| GntR family transcriptional regulator [Brucella sp. NF 2653] Length = 257 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + IAE IS + + K + LVKAG++ VR G + RP +++ Sbjct: 45 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95 >gi|107022276|ref|YP_620603.1| IclR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105892465|gb|ABF75630.1| transcriptional regulator, IclR family [Burkholderia cenocepacia AU 1054] Length = 274 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|299144189|ref|ZP_07037269.1| transcriptional regulator, DeoR family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518674|gb|EFI42413.1| transcriptional regulator, DeoR family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 299 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y S +A+ +S +++ + + AGI + +G+ GG+ + Sbjct: 7 FRILYYI--LEKGKVTASDLADKFEVSVRTIYRDIDSISSAGIPIYATQGKGGGIEIAED 64 >gi|291452184|ref|ZP_06591574.1| regulatory protein [Streptomyces albus J1074] gi|291355133|gb|EFE82035.1| regulatory protein [Streptomyces albus J1074] Length = 327 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R L SQ+A +S + L ++G++ T R Sbjct: 250 ALRALT-------STCTTSQLAARLGVSPGSASQHASILRESGLITTRR 291 >gi|270261356|ref|ZP_06189629.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044840|gb|EFA17931.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 156 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 R + IA +S K + L AG+VE+ GV L +Q Sbjct: 54 REARTTDIARRFGVSHPTAIKNIARLKSAGLVESR--PYRGVFLTEEGEQ 101 >gi|259418171|ref|ZP_05742090.1| transcriptional regulator, GntR family [Silicibacter sp. TrichCH4B] gi|259347077|gb|EEW58891.1| transcriptional regulator, GntR family [Silicibacter sp. TrichCH4B] Length = 273 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 15/43 (34%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++AE +S L L L G++ + G Sbjct: 29 RPGERLPSERELAERLGVSRPSLRDALAELQDRGLLSSRAGSG 71 >gi|220911733|ref|YP_002487042.1| GntR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858611|gb|ACL38953.1| transcriptional regulator, GntR family [Arthrobacter chlorophenolicus A6] Length = 246 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 15 MYCAIHNDYPNRIS------QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + AIH+ S +A +S + K + LV++G++ RG Sbjct: 25 IEAAIHSGVLEPGSRLDNEIDLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 77 >gi|157694167|ref|YP_001488629.1| Lrp/Asn family transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682925|gb|ABV64069.1| Lrp/Asn family transcriptional regulator [Bacillus pumilus SAFR-032] Length = 181 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M +T D + +L D + ++++ +S + + ++ L AGI+E Sbjct: 23 MKIT---DVDVHILNEL--KEDARLSMRELSKRVNLSAPAVAERVRKLEDAGIIE 72 >gi|254252768|ref|ZP_04946086.1| regulatory proteins [Burkholderia dolosa AUO158] gi|124895377|gb|EAY69257.1| regulatory proteins [Burkholderia dolosa AUO158] Length = 274 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|119960863|ref|YP_947143.1| ArsR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119947722|gb|ABM06633.1| transcriptional regulator, ArsR family [Arthrobacter aurescens TC1] Length = 108 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 19/104 (18%) Query: 9 YGI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 Y + R+L+ + + YP S +A++ +S + L L G+V V GRR Sbjct: 15 YAVSDATRARILLALSDASSYP---SDLADSLGVSRQSMSNHLTCLRGCGLVVAVPVGRR 71 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105 L + +K + C G C Sbjct: 72 SRYELA----DARLGHAIKDLIGVVLAVD-----PACCAPDGEC 106 >gi|170732523|ref|YP_001764470.1| IclR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254245843|ref|ZP_04939164.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184] gi|124870619|gb|EAY62335.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184] gi|169815765|gb|ACA90348.1| transcriptional regulator, IclR family [Burkholderia cenocepacia MC0-3] Length = 274 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|116255409|ref|YP_771242.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260057|emb|CAK03156.1| putative GntR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 239 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A S + + K+L L KAG++E R ++ G + +P Q IL++ Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAILEI 84 >gi|96771819|emb|CAI78401.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] gi|114050263|emb|CAK51298.1| putative transcriptional regulator [Streptomyces ambofaciens] gi|117164364|emb|CAJ87906.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 154 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 L+ A + P I ++A++ S + + + + K +V + G Sbjct: 39 LIRLA--HTGPLTIRELAKSLDRSHSAISQTVAAMRKEDLVTSEPGP 83 >gi|148548312|ref|YP_001268414.1| GntR domain-containing protein [Pseudomonas putida F1] gi|148512370|gb|ABQ79230.1| transcriptional regulator, GntR family [Pseudomonas putida F1] gi|313498460|gb|ADR59826.1| GntR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 249 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D SQI +S + + + L AG VET G GG R+ PA Sbjct: 36 RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPATGGFRI-DPA 94 Query: 71 DQITILDVVKATEESFFV 88 +T+ +V+ E + Sbjct: 95 TVVTLREVLAVLELRIAL 112 >gi|158313829|ref|YP_001506337.1| GntR domain-containing protein [Frankia sp. EAN1pec] gi|158109234|gb|ABW11431.1| GntR domain protein [Frankia sp. EAN1pec] Length = 268 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++++ +S + + L+ L +VET RG GG + P Sbjct: 37 AELSTMFGVSRSTVREALRLLSSQHLVETRRGVHGGTFVAAP 78 >gi|134295225|ref|YP_001118960.1| IclR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138382|gb|ABO54125.1| transcriptional regulator, IclR family [Burkholderia vietnamiensis G4] Length = 274 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|333023164|ref|ZP_08451228.1| putative DeoR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332743016|gb|EGJ73457.1| putative DeoR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 282 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R L+ + + + QI + +S + + + + L + G+V +V GGVR+ P Sbjct: 15 RELLVRHLRREGVLSVQQITQLFGVSHMTVRRDIAELERQGLVFSVP---GGVRIASP 69 >gi|332297316|ref|YP_004439238.1| transcriptional regulator, GntR family [Treponema brennaborense DSM 12168] gi|332180419|gb|AEE16107.1| transcriptional regulator, GntR family [Treponema brennaborense DSM 12168] Length = 129 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + ++AE+ ++ + + Q L + G+ ET RG Sbjct: 27 APGDKLPSVRELAESIKVNPNTIVRSYQELEREGVTETRRGTG 69 >gi|315644766|ref|ZP_07897895.1| xylan 1,4-beta-xylosidase [Paenibacillus vortex V453] gi|315279708|gb|EFU43009.1| xylan 1,4-beta-xylosidase [Paenibacillus vortex V453] Length = 845 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58 +R++ Y H + +AE +S +L K L + ++R Sbjct: 175 LRIITYIDEHYRDAISLQSLAEREFLSVPYLSKFFSENIGLNFQSYLTSIR 225 >gi|306838951|ref|ZP_07471775.1| transcriptional regulator GntR family protein [Brucella sp. NF 2653] gi|306405954|gb|EFM62209.1| transcriptional regulator GntR family protein [Brucella sp. NF 2653] Length = 497 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 55 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100 >gi|299134467|ref|ZP_07027660.1| transcriptional regulator, IclR family [Afipia sp. 1NLS2] gi|298591214|gb|EFI51416.1| transcriptional regulator, IclR family [Afipia sp. 1NLS2] Length = 268 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 19/35 (54%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +D P +S++ I + + +IL L +A +++ Sbjct: 40 SDLPVSLSEVTARLGIPKPSVHRILAQLEQAHLIK 74 >gi|260906387|ref|ZP_05914709.1| transcriptional regulator, MarR family protein [Brevibacterium linens BL2] Length = 171 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 M L + IR+LM A IA IS K++ LV AG + Sbjct: 49 MRLNESDMRAIRMLMQ-AQKQGQIITPRDIASEVGISSASTTKLIDRLVAAGHL 101 >gi|256059870|ref|ZP_05450057.1| transcriptional regulator GntR family protein [Brucella neotomae 5K33] gi|256158396|ref|ZP_05456294.1| transcriptional regulator GntR family protein [Brucella ceti M490/95/1] gi|256253815|ref|ZP_05459351.1| transcriptional regulator GntR family protein [Brucella ceti B1/94] gi|261217723|ref|ZP_05932004.1| GntR family transcriptional regulator [Brucella ceti M13/05/1] gi|261220948|ref|ZP_05935229.1| GntR family transcriptional regulator [Brucella ceti B1/94] gi|261315063|ref|ZP_05954260.1| GntR family transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316380|ref|ZP_05955577.1| GntR family transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321429|ref|ZP_05960626.1| GntR family transcriptional regulator [Brucella ceti M644/93/1] gi|261323841|ref|ZP_05963038.1| GntR family transcriptional regulator [Brucella neotomae 5K33] gi|261751042|ref|ZP_05994751.1| GntR family transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261758835|ref|ZP_06002544.1| bacterial regulatory protein [Brucella sp. F5/99] gi|265987452|ref|ZP_06100009.1| GntR family transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265996908|ref|ZP_06109465.1| GntR family transcriptional regulator [Brucella ceti M490/95/1] gi|260919532|gb|EEX86185.1| GntR family transcriptional regulator [Brucella ceti B1/94] gi|260922812|gb|EEX89380.1| GntR family transcriptional regulator [Brucella ceti M13/05/1] gi|261294119|gb|EEX97615.1| GntR family transcriptional regulator [Brucella ceti M644/93/1] gi|261295603|gb|EEX99099.1| GntR family transcriptional regulator [Brucella pinnipedialis B2/94] gi|261299821|gb|EEY03318.1| GntR family transcriptional regulator [Brucella neotomae 5K33] gi|261304089|gb|EEY07586.1| GntR family transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261738819|gb|EEY26815.1| bacterial regulatory protein [Brucella sp. F5/99] gi|261740795|gb|EEY28721.1| GntR family transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262551376|gb|EEZ07366.1| GntR family transcriptional regulator [Brucella ceti M490/95/1] gi|264659649|gb|EEZ29910.1| GntR family transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 493 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|254717961|ref|ZP_05179772.1| transcriptional regulator GntR family protein [Brucella sp. 83/13] gi|265982904|ref|ZP_06095639.1| GntR family transcriptional regulator [Brucella sp. 83/13] gi|264661496|gb|EEZ31757.1| GntR family transcriptional regulator [Brucella sp. 83/13] Length = 493 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|291299465|ref|YP_003510743.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568685|gb|ADD41650.1| transcriptional regulator, ArsR family [Stackebrandtia nassauensis DSM 44728] Length = 108 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R++ A +S++A +S L+ L+ L KAGIV Sbjct: 19 LRIIAELA---GGRVHVSELARRLGLSRPLLYMHLERLEKAGIV 59 >gi|228997577|ref|ZP_04157190.1| Transcriptional regulator, GntR family with aminotransferase domain [Bacillus mycoides Rock3-17] gi|228762205|gb|EEM11138.1| Transcriptional regulator, GntR family with aminotransferase domain [Bacillus mycoides Rock3-17] Length = 503 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +H D + IA+ IS L + K + L G V+ +G+ Sbjct: 46 LHGDSLPSLRTIADDLKISILTVRKAYKQLEIKGYVQIKQGKG 88 >gi|228475432|ref|ZP_04060150.1| transcriptional regulator, DeoR family [Staphylococcus hominis SK119] gi|228270214|gb|EEK11649.1| transcriptional regulator, DeoR family [Staphylococcus hominis SK119] Length = 320 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +D QI++ ++ +++ + L K+G+ + + G GG L Sbjct: 14 LSSDKKVTAKQISDKLEMNIRTVYRYMDTLSKSGVPIISDTGHNGGYTL 62 >gi|225628095|ref|ZP_03786130.1| GntR family transcriptional regulator [Brucella ceti str. Cudo] gi|254700538|ref|ZP_05162366.1| transcriptional regulator GntR family protein [Brucella suis bv. 5 str. 513] gi|254707576|ref|ZP_05169404.1| transcriptional regulator GntR family protein [Brucella pinnipedialis M163/99/10] gi|254708887|ref|ZP_05170698.1| transcriptional regulator GntR family protein [Brucella pinnipedialis B2/94] gi|254713689|ref|ZP_05175500.1| transcriptional regulator GntR family protein [Brucella ceti M644/93/1] gi|254715960|ref|ZP_05177771.1| transcriptional regulator GntR family protein [Brucella ceti M13/05/1] gi|256030413|ref|ZP_05444027.1| transcriptional regulator GntR family protein [Brucella pinnipedialis M292/94/1] gi|256370295|ref|YP_003107806.1| transcriptional regulator, GntR family [Brucella microti CCM 4915] gi|260169322|ref|ZP_05756133.1| transcriptional regulator, GntR family protein [Brucella sp. F5/99] gi|225616920|gb|EEH13967.1| GntR family transcriptional regulator [Brucella ceti str. Cudo] gi|256000458|gb|ACU48857.1| transcriptional regulator, GntR family [Brucella microti CCM 4915] Length = 497 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 55 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100 >gi|163796976|ref|ZP_02190932.1| transcriptional regulator, ArsR family protein [alpha proteobacterium BAL199] gi|159177723|gb|EDP62274.1| transcriptional regulator, ArsR family protein [alpha proteobacterium BAL199] Length = 111 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 L++ T + A R IA+ + L L L ++G+V++ R GR Sbjct: 13 LSQPTR--LEAFRLLAQAGPDGLRAGAIADHLGVVASTLSHHLSQLEQSGLVQSRRQGRH 70 >gi|134096899|ref|YP_001102560.1| MarR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006659|ref|ZP_06564632.1| MarR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909522|emb|CAL99634.1| MarR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 163 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 H D P +++A +S + K L L K G++ Sbjct: 62 RHADEPVTAARLAARLGMSRAGISKTLAKLEKRGLIT 98 >gi|26990314|ref|NP_745739.1| GntR family transcriptional regulator [Pseudomonas putida KT2440] gi|24985269|gb|AAN69203.1|AE016555_1 transcriptional regulator, GntR family [Pseudomonas putida KT2440] Length = 254 Score = 34.2 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D SQI +S + + + L AG VET G GG R+ PA Sbjct: 41 RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPATGGFRI-DPA 99 Query: 71 DQITILDVVKATEESFFV 88 +T+ +V+ E + Sbjct: 100 TVVTLREVLAVLELRIAL 117 >gi|325662133|ref|ZP_08150751.1| hypothetical protein HMPREF0490_01489 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085930|ref|ZP_08335013.1| hypothetical protein HMPREF0987_01316 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471582|gb|EGC74802.1| hypothetical protein HMPREF0490_01489 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406853|gb|EGG86358.1| hypothetical protein HMPREF0987_01316 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 122 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L ++G+V + R Sbjct: 29 QPGDKLPSVRDLALEAAVNPNTMQKALSELERSGLVYSQR 68 >gi|320323679|gb|EFW79763.1| GntR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328317|gb|EFW84321.1| GntR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 244 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|293396037|ref|ZP_06640318.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291421535|gb|EFE94783.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 433 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 D + Q+A+ ++ + L AG+V T RGR G V L +P Sbjct: 28 QAGDLLPPVRQLAQQLGVNPNTVASGYGKLRDAGLVAT-RGRAGTVVLEQP 77 >gi|290960739|ref|YP_003491921.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260650265|emb|CBG73381.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 257 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R L + + D I + + +++ L G + V+G+ G RL Sbjct: 10 RALDILELFLDGDGTLSAPDIVRRLQLPRTTVHELVTTLAARGYIVQVQGQPGRYRLGVR 69 Query: 70 A 70 Sbjct: 70 P 70 >gi|257440292|ref|ZP_05616047.1| methylphosphotriester-DNA alkyltransferase [Faecalibacterium prausnitzii A2-165] gi|257197326|gb|EEU95610.1| methylphosphotriester-DNA alkyltransferase [Faecalibacterium prausnitzii A2-165] Length = 271 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Y A + ++ +A +S +L ++ + + IV+ + GRR Sbjct: 175 YLAANYQQKFSLTDVAARFYLSPYYLSRLFRRVTGQSIVDYINGRR 220 >gi|256377030|ref|YP_003100690.1| DeoR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921333|gb|ACU36844.1| regulatory protein DeoR [Actinosynnema mirum DSM 43827] Length = 362 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + D R+ ++A +S + + + + L + G+V R GG L PA Sbjct: 14 LRRDGVVRVHELAVRLGVSAITVRRDITRLAREGVV---RRVHGGATLELPA 62 >gi|221214019|ref|ZP_03586992.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] gi|221166196|gb|EED98669.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] Length = 274 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|170690305|ref|ZP_02881472.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] gi|170144740|gb|EDT12901.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] Length = 230 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 12 RVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 RVL+ ++ +IAE +S + + + L K G+VE GR Sbjct: 20 RVLLDAISEGSLAPGTRIVQEEIAEQLAVSRSPVLQAFRLLKKDGLVEDAPGRG 73 >gi|170702197|ref|ZP_02893102.1| transcriptional regulator, IclR family [Burkholderia ambifaria IOP40-10] gi|170132883|gb|EDT01306.1| transcriptional regulator, IclR family [Burkholderia ambifaria IOP40-10] Length = 269 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 15 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 64 >gi|126666829|ref|ZP_01737806.1| biotin--protein ligase [Marinobacter sp. ELB17] gi|126628874|gb|EAZ99494.1| biotin--protein ligase [Marinobacter sp. ELB17] Length = 321 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD----QI 73 +++ + +A +S ++KI++ +K G +++VRG G +L P D +I Sbjct: 10 LNDGKIHSGQSLATEFGVSRTAIWKIVRRALKEGFNIQSVRGH--GYQLASPVDFLDQEI 67 Query: 74 TILDVVKA 81 + +V A Sbjct: 68 IVKNVASA 75 >gi|56696786|ref|YP_167147.1| GntR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678523|gb|AAV95189.1| transcriptional regulator, GntR family [Ruegeria pomeroyi DSS-3] Length = 243 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74 ++ +++A+ +S + + L+ L ++ T RG GG + R A QIT Sbjct: 31 DERLPSEAELADQFKVSRPTVREALKRLAAQSLIRTQRGAFGGAFVNRLSFEDAQAQQIT 90 Query: 75 ILDVVKATEESFFVAECFAS 94 ++ + F C A Sbjct: 91 TSTLLLSMNAVSFDTACEAR 110 >gi|116514608|ref|YP_813514.1| transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093923|gb|ABJ59076.1| transcriptional regulator, GntR family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 124 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ + ++A + + K L + G V +V+GR Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72 >gi|89894523|ref|YP_518010.1| hypothetical protein DSY1777 [Desulfitobacterium hafniense Y51] gi|219668954|ref|YP_002459389.1| GntR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333971|dbj|BAE83566.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539214|gb|ACL20953.1| transcriptional regulator, GntR family [Desulfitobacterium hafniense DCB-2] Length = 259 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++IA IS + + + + L+ AG+V +G+ Sbjct: 35 GEALPTETEIANRFEISRMTVRRAIAELITAGMVHAQQGKG 75 >gi|325518223|gb|EGC97984.1| GntR family transcriptional regulator [Burkholderia sp. TJI49] Length = 247 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A+ + + E +S + K ++ LV G+VE RG+ Sbjct: 26 ALPPGSQLPAEERLIERFGVSRTTVRKAVENLVARGLVEIRRGKG 70 >gi|315186174|gb|EFU19936.1| regulatory protein MarR [Spirochaeta thermophila DSM 6578] Length = 407 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGG---VRLCRPADQITILDVV 79 S+IAE + + + KI+ L + G+V G RGG + L + V+ Sbjct: 28 SEIAEDLGLDKSTVTKIVASLEQMGLVVPREEGPSGPRGGRKPIYLGINP---SFGMVL 83 >gi|313812472|gb|EFS50186.1| putative histidine utilization repressor [Propionibacterium acnes HL025PA1] Length = 238 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 18 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 58 >gi|309777871|ref|ZP_07672816.1| transcriptional regulator, GntR family [Erysipelotrichaceae bacterium 3_1_53] gi|308914355|gb|EFP60150.1| transcriptional regulator, GntR family [Erysipelotrichaceae bacterium 3_1_53] Length = 124 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ND + +A ++ + K Q L + G + + +G+ Sbjct: 32 NDKLPSVRAMASQIGVNPNTVAKAYQELEEQGYIYSEKGKG 72 >gi|307719406|ref|YP_003874938.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] gi|306533131|gb|ADN02665.1| putative transcriptional repressor [Spirochaeta thermophila DSM 6192] Length = 392 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGG---VRLCRPADQITILDVV 79 S+IAE + + + KI+ L + G+V G RGG + L + V+ Sbjct: 28 SEIAEDLGLDKSTVTKIVASLEQMGLVVPREEGPSGPRGGRKPIYLGINP---SFGMVL 83 >gi|301312283|ref|ZP_07218200.1| putative transcriptional regulator [Bacteroides sp. 20_3] gi|300829705|gb|EFK60358.1| putative transcriptional regulator [Bacteroides sp. 20_3] Length = 443 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 +A ++E ++ K+++ L + G +E + R+ G Sbjct: 401 DLANRLDLTEQYIRKLIKKLKEHGWIERIGARKNGYW 437 >gi|326778903|ref|ZP_08238168.1| hypothetical protein SACT1_4760 [Streptomyces cf. griseus XylebKG-1] gi|326659236|gb|EGE44082.1| hypothetical protein SACT1_4760 [Streptomyces cf. griseus XylebKG-1] Length = 269 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L+ A D S IA S + L+ L AG+VE VR Sbjct: 189 RRLLELA---DGVRTASDIARTLGRSAFHVLVDLRRLAAAGLVEAVR 232 >gi|296269722|ref|YP_003652354.1| IclR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092509|gb|ADG88461.1| transcriptional regulator, IclR family [Thermobispora bispora DSM 43833] Length = 247 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + L+ + P ++A A + + +L+ LV G + Sbjct: 14 ALH-LLDAVASGERPATAKELARAVGLPLPTTYHLLRTLVHEGYLR 58 >gi|255305467|ref|ZP_05349639.1| GntR family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 489 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A +S + K L L + G+++T+ G+ Sbjct: 283 KQLANQYGVSVSTIRKALAELEQRGLIKTLNGKG 316 >gi|147678275|ref|YP_001212490.1| Mn-dependent transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146274372|dbj|BAF60121.1| Mn-dependent transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 156 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ- 72 ++Y + RI+ +A A + K++Q L +AG V R G + L + ++ Sbjct: 29 MIYRLSKDTGFTRINDLAAALNVQPPSATKMVQKLAEAGYVNYER--YGIILLSKNGEKR 86 Query: 73 -ITILDVVKATEESFFV 88 T+L+ + E+ + Sbjct: 87 GRTLLERHRVVEDFLNL 103 >gi|104774497|ref|YP_619477.1| GntR family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423578|emb|CAI98504.1| Transcriptional regulator (GntR family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 124 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ + ++A + + K L + G V +V+GR Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72 >gi|66043762|ref|YP_233603.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae B728a] gi|63254469|gb|AAY35565.1| regulatory protein, GntR:Bacterial regulatory protein, GntR [Pseudomonas syringae pv. syringae B728a] Length = 249 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L+ + + +AE+ IS L + + L + G++ GV + + D Sbjct: 50 RMLVEGELVPGQRLSEAALAESLDISRNTLREAFRVLTREGLLTHE--PNRGVTVAK-PD 106 Query: 72 QITILDVVKA 81 +I+D+ + Sbjct: 107 MASIIDIYRI 116 >gi|83944122|ref|ZP_00956578.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. EE-36] gi|83844989|gb|EAP82870.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. EE-36] Length = 230 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++E +S L + L+ L + G+V + +G Sbjct: 30 GDKLPTEHAMSEMLEVSRPVLRQALKQLREDGVVVSRQGSG 70 >gi|319745794|gb|EFV98088.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae ATCC 13813] Length = 228 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 19/29 (65%) Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVE 55 +S +A++ +S L +++ +VK G+++ Sbjct: 179 LSSLADSFGVSYRHLLRVIHDMVKEGLIQ 207 >gi|315424934|dbj|BAJ46610.1| hypothetical protein HGMM_F01H02C17 [Candidatus Caldiarchaeum subterraneum] Length = 102 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGR 60 R ++ ++ I+ A IS + +I+ L + +VE T RGR Sbjct: 41 RAVVDLLRRSNGVVEQRDISRALGISRIKTHRIVASLRRREVVEVTRRGR 90 >gi|315646796|ref|ZP_07899911.1| transcriptional regulator, Crp/Fnr family protein [Paenibacillus vortex V453] gi|315277726|gb|EFU41050.1| transcriptional regulator, Crp/Fnr family protein [Paenibacillus vortex V453] Length = 233 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 ++ IA S L +++ + G++E +G L + + +TI Sbjct: 179 NLTDIANLLGTSYRHLNRVILKFSQEGLIERRKG----FILIKNREALTI 224 >gi|312126765|ref|YP_003991639.1| GntR family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776784|gb|ADQ06270.1| transcriptional regulator, GntR family [Caldicellulosiruptor hydrothermalis 108] Length = 128 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 19/42 (45%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N+ + +++ I+ + K Q L + G + ++ G+ Sbjct: 31 ENEQLPSVRSLSKELTINPNTIQKAYQELEREGYIYSIPGKG 72 >gi|315502583|ref|YP_004081470.1| transcriptional regulator, gntr family with aminotransferase domain protein [Micromonospora sp. L5] gi|315409202|gb|ADU07319.1| transcriptional regulator, GntR family with aminotransferase domain protein [Micromonospora sp. L5] Length = 445 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ + GIR A D + +A +S + K Q L + G+V T GR G Sbjct: 15 ISASVESGIRT-GDLA-PGDALPAVRALAAELDVSPATVAKAYQELRQRGLVATA-GRHG 71 Query: 63 GVRLCRPA 70 RP Sbjct: 72 TRVRPRPP 79 >gi|238064370|ref|ZP_04609079.1| ArsR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237886181|gb|EEP75009.1| ArsR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 113 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A+ ++ +A+ +S+ K L+ L + G+V VRG Sbjct: 23 LALLRAGERPVTDLAQELGMSQPQASKHLRVLREVGLVR-VRGAG 66 >gi|256374564|ref|YP_003098224.1| MarR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918867|gb|ACU34378.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM 43827] Length = 139 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + L A P R+ +A ++ L +I+ LV+AG V Sbjct: 34 AVSALATLARCG--PMRLGDLANKEGVAPPTLSRIVATLVEAGYVR 77 >gi|225628946|ref|ZP_03786980.1| transcriptional regulator, GntR family protein [Brucella ceti str. Cudo] gi|237817172|ref|ZP_04596164.1| transcriptional regulator, GntR family [Brucella abortus str. 2308 A] gi|225616792|gb|EEH13840.1| transcriptional regulator, GntR family protein [Brucella ceti str. Cudo] gi|237787985|gb|EEP62201.1| transcriptional regulator, GntR family [Brucella abortus str. 2308 A] Length = 259 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + IAE IS + + K + LVKAG++ VR G + RP +++ Sbjct: 47 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 97 >gi|297192004|ref|ZP_06909402.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719549|gb|EDY63457.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 333 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 7/48 (14%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R L P S +A ++ + L L AG++ + R Sbjct: 268 LRAL-------GEPASTSSLARLLGLAPSTVSAHLSVLRAAGLLTSRR 308 >gi|251799959|ref|YP_003014690.1| hypothetical protein Pjdr2_6000 [Paenibacillus sp. JDR-2] gi|247547585|gb|ACT04604.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2] Length = 237 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +LM + +++AE +SE +++ + L +G+ V G GG L Sbjct: 9 ILMLL--QLEGKKTAAELAERLEVSERTIYRDMDALSLSGVPVYADSGAGGGFSL 61 >gi|152996798|ref|YP_001341633.1| GntR domain-containing protein [Marinomonas sp. MWYL1] gi|150837722|gb|ABR71698.1| GntR domain protein [Marinomonas sp. MWYL1] Length = 258 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 D IAE +S L + L L IVE +G G+ L + I Sbjct: 31 GDRLPPERDIAEQLGVSRTLLREALIMLELMEIVEVRKGS--GIYLLKQPTSI 81 >gi|161525273|ref|YP_001580285.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349989|ref|YP_001945617.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342702|gb|ABX15788.1| transcriptional regulator, IclR family [Burkholderia multivorans ATCC 17616] gi|189334011|dbj|BAG43081.1| IclR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 274 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|86742506|ref|YP_482906.1| MarR family transcriptional regulator [Frankia sp. CcI3] gi|86569368|gb|ABD13177.1| transcriptional regulator, MarR family [Frankia sp. CcI3] Length = 172 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 24/42 (57%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 VL+ A + R+S++A+A +S L +++ L + G+V Sbjct: 57 VLVQLAEAPNGELRMSELAQAVLLSRSGLTRLVDRLEREGLV 98 >gi|82548051|gb|ABB82575.1| regulator of catechol degradative operon [Nocardia sp. C-14-1] Length = 256 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETV 57 + A +P ++++A +S + +IL L K G V + Sbjct: 18 VLLAFDERHPTPSLAELAAKTDLSRPAVRRILLTLQKLGYVTST 61 >gi|62290751|ref|YP_222544.1| GntR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|62196883|gb|AAX75183.1| transcriptional regulator, GNTR family/aminotransferase Class-I [Brucella abortus bv. 1 str. 9-941] Length = 484 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 42 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 87 >gi|330944822|gb|EGH46706.1| transcriptional regulator GntR [Pseudomonas syringae pv. pisi str. 1704B] Length = 249 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70 D S I E +S + + + L +G+V+T G G R+ Sbjct: 36 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVDTRHGIGTFVLDTPSPSGFRI--DP 93 Query: 71 DQI-TILDVVKATE 83 I T+ DV+ E Sbjct: 94 ATIVTLRDVLAILE 107 >gi|332286053|ref|YP_004417964.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330430006|gb|AEC21340.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 241 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D Q+ E +S + + + L G+V + +GR Sbjct: 33 GDKLPSEKQLGEQFSVSRSVVREAVSQLKSEGLVSSQQGRG 73 >gi|315304603|ref|ZP_07874844.1| helix-turn-helix type 11 domain-containing protein [Listeria ivanovii FSL F6-596] gi|313627032|gb|EFR95924.1| helix-turn-helix type 11 domain-containing protein [Listeria ivanovii FSL F6-596] Length = 298 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 R+L + + S++AE +S +++ + L+ AG V + G+ GG Sbjct: 5 RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGF 58 >gi|306844864|ref|ZP_07477447.1| GntR family transcriptional regulator [Brucella sp. BO1] gi|306274796|gb|EFM56577.1| GntR family transcriptional regulator [Brucella sp. BO1] Length = 493 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|315506125|ref|YP_004085012.1| transcriptional regulator, gntr family with aminotransferase domain protein [Micromonospora sp. L5] gi|315412744|gb|ADU10861.1| transcriptional regulator, GntR family with aminotransferase domain protein [Micromonospora sp. L5] Length = 463 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L A + ++ +S + + + + LV G+VET GR Sbjct: 16 ALAADAAPGTRLPSVRELTAHHHVSPVTVAEATRRLVADGLVETRPGRG 64 >gi|302534182|ref|ZP_07286524.1| predicted protein [Streptomyces sp. C] gi|302443077|gb|EFL14893.1| predicted protein [Streptomyces sp. C] Length = 367 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 N ++A +S +++ ++ L +G+ V RG GG RL Sbjct: 14 QNRGRMTAPELAAELEVSVRTVYRDVEALGASGVPVRADRGPAGGYRL 61 >gi|256112229|ref|ZP_05453150.1| transcriptional regulator GntR family protein [Brucella melitensis bv. 3 str. Ether] gi|260562812|ref|ZP_05833298.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|265991925|ref|ZP_06104482.1| GntR family transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993656|ref|ZP_06106213.1| GntR family transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265999296|ref|ZP_05465714.2| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260152828|gb|EEW87920.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|262764637|gb|EEZ10558.1| GntR family transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263002991|gb|EEZ15284.1| GntR family transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263093104|gb|EEZ17239.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|326409895|gb|ADZ66960.1| GntR family transcriptional regulator [Brucella melitensis M28] gi|326539608|gb|ADZ87823.1| transcriptional regulator GntR family protein [Brucella melitensis M5-90] Length = 493 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|256391814|ref|YP_003113378.1| ROK family protein [Catenulispora acidiphila DSM 44928] gi|256358040|gb|ACU71537.1| ROK family protein [Catenulispora acidiphila DSM 44928] Length = 379 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET---VRGRRG----GVRLC 67 A+ D P ++EA IS++ + + L G+V + RG G L Sbjct: 18 ALAVDGPASRPALSEALGISKVTMSAAIGELESLGLVRSQGMTRGATGRSAVLYTLA 74 >gi|225853331|ref|YP_002733564.1| GntR family transcriptional regulator [Brucella melitensis ATCC 23457] gi|256045503|ref|ZP_05448386.1| transcriptional regulator GntR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|225641696|gb|ACO01610.1| transcriptional regulator GntR family protein [Brucella melitensis ATCC 23457] Length = 497 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 55 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100 >gi|289426809|ref|ZP_06428535.1| putative histidine utilization repressor [Propionibacterium acnes J165] gi|295130252|ref|YP_003580915.1| putative histidine utilization repressor [Propionibacterium acnes SK137] gi|289159898|gb|EFD08076.1| putative histidine utilization repressor [Propionibacterium acnes J165] gi|291375938|gb|ADD99792.1| putative histidine utilization repressor [Propionibacterium acnes SK137] Length = 253 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 33 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 73 >gi|254463882|ref|ZP_05077293.1| regulatory protein GntR, HTH [Rhodobacterales bacterium Y4I] gi|206684790|gb|EDZ45272.1| regulatory protein GntR, HTH [Rhodobacterales bacterium Y4I] Length = 242 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++++ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELSDHFKVSRPTVREALKRLAAQSLIRTQRGATGG 73 >gi|163839131|ref|YP_001623536.1| GntR family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952607|gb|ABY22122.1| transcriptional regulator, GntR family [Renibacterium salmoninarum ATCC 33209] Length = 244 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A +S + K + LV+AG++ RG Sbjct: 43 ELAAQLKLSRPTMRKAMDELVRAGLLVRKRGVG 75 >gi|114708049|ref|ZP_01440938.1| putative Transcription activator HlyU [Fulvimarina pelagi HTCC2506] gi|114536505|gb|EAU39640.1| putative Transcription activator HlyU [Fulvimarina pelagi HTCC2506] Length = 113 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLC 67 +R+L A ++ +A A +S+ L + L L G VET R R+ RL Sbjct: 32 LRILCLLAKSE---MQVGTLAAAVGLSQSALSQHLAKLRVGGAVETRRNRQAIHYRLA 86 >gi|62182932|ref|YP_219349.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130565|gb|AAX68268.1| transcriptional repressor for uxu operon [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717435|gb|EFZ09006.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 257 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +IAE ++ + + L L G+VE RG Sbjct: 28 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG 70 >gi|154245265|ref|YP_001416223.1| GntR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159350|gb|ABS66566.1| transcriptional regulator, GntR family [Xanthobacter autotrophicus Py2] Length = 271 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 18/34 (52%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++E ++ L + L L + G++E GR Sbjct: 69 AELSETFGVNRHTLRRALAHLAEQGLIEATAGRG 102 >gi|83955179|ref|ZP_00963835.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. NAS-14.1] gi|83840508|gb|EAP79681.1| transcriptional regulator, GntR family protein [Sulfitobacter sp. NAS-14.1] Length = 247 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++E +S L + L+ L + G+V + +G Sbjct: 47 GDKLPTEHAMSEMLEVSRPVLRQALKQLREDGVVVSRQGSG 87 >gi|117918698|ref|YP_867890.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117611030|gb|ABK46484.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 220 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 14/71 (19%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55 + +Y R+L Y + S+++E + E+++ ++ Q L K +E Sbjct: 152 TKIEY--RLLHYLMANPTKIVSKSELSERIYEEEQIKDSNVIEVYINRLRQRLGKD-YIE 208 Query: 56 TVRGRRGGVRL 66 T RG+ G RL Sbjct: 209 TRRGQ--GYRL 217 >gi|331694102|ref|YP_004330341.1| regulatory protein MarR [Pseudonocardia dioxanivorans CB1190] gi|326948791|gb|AEA22488.1| regulatory protein MarR [Pseudonocardia dioxanivorans CB1190] Length = 162 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +DY I L+ + D+ R+S +A+ S+ L + + KAG+VE Sbjct: 43 SHSDYSI--LVVLSEAPDHQMRMSALADFIASSKSRLSHQVARMEKAGLVE 91 >gi|328544067|ref|YP_004304176.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326413811|gb|ADZ70874.1| Transcriptional regulator, putative [Polymorphum gilvum SL003B-26A1] Length = 234 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 +A+ S + + ++ LV G++++ RG G RP + Sbjct: 23 EGSRLPSERDLAKILSTSRPTVSQAIRILVVKGLIQSRRG-SGSYVTRRPQE 73 >gi|313903698|ref|ZP_07837087.1| regulatory protein ArsR [Thermaerobacter subterraneus DSM 13965] gi|313465886|gb|EFR61411.1| regulatory protein ArsR [Thermaerobacter subterraneus DSM 13965] Length = 366 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 12 RVLMYCAIHN---------DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R+L A + P ++A A +SE + + ++ L AG+V R G Sbjct: 285 RMLFALAHEARLQILKLCHEGPKSTQELARALSLSEAAISRHVRILHDAGLVRARR--DG 342 Query: 63 GVRL 66 L Sbjct: 343 YYVL 346 >gi|312897438|ref|ZP_07756862.1| DeoR-like helix-turn-helix protein [Megasphaera micronuciformis F0359] gi|310621499|gb|EFQ05035.1| DeoR-like helix-turn-helix protein [Megasphaera micronuciformis F0359] Length = 266 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + + Q++E ISE + L L K G+V V G Sbjct: 31 ERAVTVQQLSERYGISESTARRDLLTLQKMGLVNRVHG 68 >gi|310640229|ref|YP_003944987.1| transcriptional regulator, fadr family [Paenibacillus polymyxa SC2] gi|309245179|gb|ADO54746.1| Transcriptional regulator, FadR family [Paenibacillus polymyxa SC2] Length = 237 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 18/42 (42%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++++E +S + + K + LV G + +G+ Sbjct: 29 QGSRIPTETELSEMYNVSRITVRKAIAELVHEGYLTKRQGKG 70 >gi|304393243|ref|ZP_07375171.1| putative transcriptional regulator, Crp [Ahrensia sp. R2A130] gi|303294250|gb|EFL88622.1| putative transcriptional regulator, Crp [Ahrensia sp. R2A130] Length = 264 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 D P +A+ +S + + + L L G V+T RG+ ITILD Sbjct: 195 DIPVSHDVLADILGLSSVHVSRQLAILQSKGFVKTGRGK------------ITILD 238 >gi|301629449|ref|XP_002943852.1| PREDICTED: HTH-type transcriptional regulator yiaJ-like [Xenopus (Silurana) tropicalis] Length = 266 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L+ + + +I+E + +IL LV V+ R G RL + Sbjct: 23 LIDVLASREEAISLKEISERTGLHPSTAHRILNDLVIGRFVD--RPESGSYRLGMRLLE- 79 Query: 74 TILDVVKA 81 + ++VKA Sbjct: 80 -LGNLVKA 86 >gi|297195419|ref|ZP_06912817.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152777|gb|EDY63116.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 269 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 17/93 (18%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----CRPADQIT- 74 + E +S + + + L L G+V T G G R RPA + Sbjct: 40 GGKLPSSRALVERFRVSPVTVSRALAQLAAEGLVVTRPGA-GAYRAEPRADARPAGDTSW 98 Query: 75 ---------ILDVV-KATEESFFVAECFASHKI 97 ++V +A + S + A Sbjct: 99 QEVALSADAAAEIVPRAVDASGVLVTLAAPPPG 131 >gi|289644428|ref|ZP_06476507.1| transcriptional regulator, ArsR family [Frankia symbiont of Datisca glomerata] gi|289505753|gb|EFD26773.1| transcriptional regulator, ArsR family [Frankia symbiont of Datisca glomerata] Length = 126 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IRVL A D P + Q+ A + L + L L ++GIV R Sbjct: 32 IRVLELLA---DGPTPVRQLLAAIEVEPSNLSQQLAVLRRSGIVTATR 76 >gi|302866023|ref|YP_003834660.1| regulatory protein GntR HTH [Micromonospora aurantiaca ATCC 27029] gi|302568882|gb|ADL45084.1| regulatory protein GntR HTH [Micromonospora aurantiaca ATCC 27029] Length = 445 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 ++ + GIR A D + +A +S + K Q L + G+V T GR G Sbjct: 15 ISASVESGIRT-GDLA-PGDALPAVRALAAELDVSPATVAKAYQELRQRGLVATA-GRHG 71 Query: 63 GVRLCRPA 70 RP Sbjct: 72 TRVRPRPP 79 >gi|261214846|ref|ZP_05929127.1| GntR family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260916453|gb|EEX83314.1| GntR family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 493 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|290956075|ref|YP_003487257.1| DeoR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260645601|emb|CBG68692.1| putative DeoR-family transcriptional regulator [Streptomyces scabiei 87.22] Length = 256 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 L+ A+ + P ++ ++E +S + + L L + G++ V G Sbjct: 14 HQLILRALRSGGPAAVTDLSEQLGVSPATIRRDLVRLEEEGLLTRVHG 61 >gi|222481501|ref|YP_002567737.1| hypothetical protein Hlac_3638 [Halorubrum lacusprofundi ATCC 49239] gi|222454877|gb|ACM59140.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 308 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + VL Y D P +S+IA + ++L+ G+V T G Sbjct: 88 ALEVLYYL----DQPRTVSEIANRSNNYRNTVNRVLKRFRNRGLVGTAHG 133 >gi|221201421|ref|ZP_03574460.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] gi|221208023|ref|ZP_03581029.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221172208|gb|EEE04649.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221178689|gb|EEE11097.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] Length = 274 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|169631567|ref|YP_001705216.1| IclR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243534|emb|CAM64562.1| Putative transcriptional regulator, IclR family [Mycobacterium abscessus] Length = 239 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65 ++L A N + ++AEA + + + +I+Q L + V GR G + Sbjct: 7 AAQILDALAESNSG-LSVRELAEATGLPKSSVHRIVQELTVSQYVMAG-GRGGSYQ 60 >gi|251795922|ref|YP_003010653.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543548|gb|ACT00567.1| transcriptional regulator, AraC family [Paenibacillus sp. JDR-2] Length = 261 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 14/35 (40%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 L + H + +IA A +S L ++ + Sbjct: 157 ALAWIHEHFAEEVTLKEIAAAANVSPEHLARLFKQ 191 >gi|167745538|ref|ZP_02417665.1| hypothetical protein ANACAC_00229 [Anaerostipes caccae DSM 14662] gi|167655259|gb|EDR99388.1| hypothetical protein ANACAC_00229 [Anaerostipes caccae DSM 14662] Length = 327 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPA 70 ++L+ ++ E +S ++K ++ L + G V ++V G +L + Sbjct: 4 KILIRL-KQCGGYVSGQELCETFGVSRTAVWKHIKALKEEGYVIDSV--SNKGYKLVKSP 60 Query: 71 DQITILD 77 I + + Sbjct: 61 -DILLAE 66 >gi|110668064|ref|YP_657875.1| hypothetical protein HQ2121A [Haloquadratum walsbyi DSM 16790] gi|109625811|emb|CAJ52248.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790] Length = 119 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R++++ ++D + + IAE + + IL L + G+V R Sbjct: 27 RIVLFLDKNDDRAWKATTIAEQLGLDTDAVSAILSRLKERGLVRHKR 73 >gi|93279909|pdb|2G7U|A Chain A, 2.3 A Structure Of Putative Catechol Degradative Operon Regulator From Rhodococcus Sp. Rha1 gi|93279910|pdb|2G7U|B Chain B, 2.3 A Structure Of Putative Catechol Degradative Operon Regulator From Rhodococcus Sp. Rha1 gi|93279911|pdb|2G7U|C Chain C, 2.3 A Structure Of Putative Catechol Degradative Operon Regulator From Rhodococcus Sp. Rha1 gi|93279912|pdb|2G7U|D Chain D, 2.3 A Structure Of Putative Catechol Degradative Operon Regulator From Rhodococcus Sp. Rha1 Length = 257 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + A PN ++++A +S + +IL L K G V G G L + Sbjct: 19 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 73 Query: 74 TILD 77 +I Sbjct: 74 SIGQ 77 >gi|50842163|ref|YP_055390.1| GntR family transcriptional regulator [Propionibacterium acnes KPA171202] gi|289426243|ref|ZP_06427989.1| putative histidine utilization repressor [Propionibacterium acnes SK187] gi|50839765|gb|AAT82432.1| transcriptional regulator, GntR family [Propionibacterium acnes KPA171202] gi|289153408|gb|EFD02123.1| putative histidine utilization repressor [Propionibacterium acnes SK187] gi|313763881|gb|EFS35245.1| putative histidine utilization repressor [Propionibacterium acnes HL013PA1] gi|313771415|gb|EFS37381.1| putative histidine utilization repressor [Propionibacterium acnes HL074PA1] gi|313791539|gb|EFS39657.1| putative histidine utilization repressor [Propionibacterium acnes HL110PA1] gi|313802374|gb|EFS43600.1| putative histidine utilization repressor [Propionibacterium acnes HL110PA2] gi|313808246|gb|EFS46720.1| putative histidine utilization repressor [Propionibacterium acnes HL087PA2] gi|313811291|gb|EFS49005.1| putative histidine utilization repressor [Propionibacterium acnes HL083PA1] gi|313814831|gb|EFS52545.1| putative histidine utilization repressor [Propionibacterium acnes HL059PA1] gi|313819012|gb|EFS56726.1| putative histidine utilization repressor [Propionibacterium acnes HL046PA2] gi|313820843|gb|EFS58557.1| putative histidine utilization repressor [Propionibacterium acnes HL036PA1] gi|313822396|gb|EFS60110.1| putative histidine utilization repressor [Propionibacterium acnes HL036PA2] gi|313825810|gb|EFS63524.1| putative histidine utilization repressor [Propionibacterium acnes HL063PA1] gi|313828154|gb|EFS65868.1| putative histidine utilization repressor [Propionibacterium acnes HL063PA2] gi|313830957|gb|EFS68671.1| putative histidine utilization repressor [Propionibacterium acnes HL007PA1] gi|313833383|gb|EFS71097.1| putative histidine utilization repressor [Propionibacterium acnes HL056PA1] gi|313838958|gb|EFS76672.1| putative histidine utilization repressor [Propionibacterium acnes HL086PA1] gi|314915085|gb|EFS78916.1| putative histidine utilization repressor [Propionibacterium acnes HL005PA4] gi|314918760|gb|EFS82591.1| putative histidine utilization repressor [Propionibacterium acnes HL050PA1] gi|314920561|gb|EFS84392.1| putative histidine utilization repressor [Propionibacterium acnes HL050PA3] gi|314925600|gb|EFS89431.1| putative histidine utilization repressor [Propionibacterium acnes HL036PA3] gi|314932235|gb|EFS96066.1| putative histidine utilization repressor [Propionibacterium acnes HL067PA1] gi|314954649|gb|EFS99055.1| putative histidine utilization repressor [Propionibacterium acnes HL027PA1] gi|314958530|gb|EFT02632.1| putative histidine utilization repressor [Propionibacterium acnes HL002PA1] gi|314959873|gb|EFT03975.1| putative histidine utilization repressor [Propionibacterium acnes HL002PA2] gi|314962436|gb|EFT06537.1| putative histidine utilization repressor [Propionibacterium acnes HL082PA1] gi|314968304|gb|EFT12403.1| putative histidine utilization repressor [Propionibacterium acnes HL037PA1] gi|314973841|gb|EFT17937.1| putative histidine utilization repressor [Propionibacterium acnes HL053PA1] gi|314976495|gb|EFT20590.1| putative histidine utilization repressor [Propionibacterium acnes HL045PA1] gi|314979227|gb|EFT23321.1| putative histidine utilization repressor [Propionibacterium acnes HL072PA2] gi|314983393|gb|EFT27485.1| putative histidine utilization repressor [Propionibacterium acnes HL005PA1] gi|314986811|gb|EFT30903.1| putative histidine utilization repressor [Propionibacterium acnes HL005PA2] gi|314989372|gb|EFT33463.1| putative histidine utilization repressor [Propionibacterium acnes HL005PA3] gi|315077351|gb|EFT49411.1| putative histidine utilization repressor [Propionibacterium acnes HL053PA2] gi|315080095|gb|EFT52071.1| putative histidine utilization repressor [Propionibacterium acnes HL078PA1] gi|315083977|gb|EFT55953.1| putative histidine utilization repressor [Propionibacterium acnes HL027PA2] gi|315085178|gb|EFT57154.1| putative histidine utilization repressor [Propionibacterium acnes HL002PA3] gi|315089029|gb|EFT61005.1| putative histidine utilization repressor [Propionibacterium acnes HL072PA1] gi|315096462|gb|EFT68438.1| putative histidine utilization repressor [Propionibacterium acnes HL038PA1] gi|315099030|gb|EFT71006.1| putative histidine utilization repressor [Propionibacterium acnes HL059PA2] gi|315100890|gb|EFT72866.1| putative histidine utilization repressor [Propionibacterium acnes HL046PA1] gi|315107180|gb|EFT79156.1| putative histidine utilization repressor [Propionibacterium acnes HL030PA1] gi|315108109|gb|EFT80085.1| putative histidine utilization repressor [Propionibacterium acnes HL030PA2] gi|327326868|gb|EGE68651.1| transcription regulator, GntR family [Propionibacterium acnes HL096PA2] gi|327330936|gb|EGE72680.1| transcription regulator, GntR family [Propionibacterium acnes HL096PA3] gi|327442928|gb|EGE89582.1| putative histidine utilization repressor [Propionibacterium acnes HL043PA1] gi|327445053|gb|EGE91707.1| putative histidine utilization repressor [Propionibacterium acnes HL043PA2] gi|327447426|gb|EGE94080.1| putative histidine utilization repressor [Propionibacterium acnes HL013PA2] gi|327450032|gb|EGE96686.1| putative histidine utilization repressor [Propionibacterium acnes HL087PA3] gi|327455239|gb|EGF01894.1| putative histidine utilization repressor [Propionibacterium acnes HL092PA1] gi|327455417|gb|EGF02072.1| putative histidine utilization repressor [Propionibacterium acnes HL083PA2] gi|328752700|gb|EGF66316.1| putative histidine utilization repressor [Propionibacterium acnes HL087PA1] gi|328752919|gb|EGF66535.1| putative histidine utilization repressor [Propionibacterium acnes HL020PA1] gi|328759383|gb|EGF72999.1| putative histidine utilization repressor [Propionibacterium acnes HL025PA2] gi|328760294|gb|EGF73865.1| transcription regulator, GntR family [Propionibacterium acnes HL099PA1] gi|332675090|gb|AEE71906.1| transcriptional regulator, GntR family [Propionibacterium acnes 266] Length = 241 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61 >gi|55379981|ref|YP_137831.1| transcription regulator [Haloarcula marismortui ATCC 43049] gi|55232706|gb|AAV48125.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 215 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 R+L A P +++I+E +S + LQ L AG++++ Sbjct: 17 RILKLLAHK---PCYVTEISEYIGVSPKAVIDHLQKLEDAGLIDSR 59 >gi|315302017|ref|ZP_07872998.1| transcriptional regulator [Listeria ivanovii FSL F6-596] gi|313629610|gb|EFR97762.1| transcriptional regulator [Listeria ivanovii FSL F6-596] Length = 120 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 D + ++A ++ + + L + GI+ T+RG G L +I Sbjct: 29 GDKLLSVRELASKLEVNPTTVQRAYAELEEHGIIYTIRGT--GKYLTEDKRRI 79 >gi|307331407|ref|ZP_07610526.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] gi|306882966|gb|EFN14033.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] Length = 253 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR-GGVRLC 67 +R+L A H+ + I IA + L +L L + G VE + G GG+ L Sbjct: 17 ALRILEVVAKHSSGVSDIM-IARETRLPAHQLADLLLMLRREGYVEQIADGAYVGGISLS 75 >gi|290955659|ref|YP_003486841.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260645185|emb|CBG68271.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 112 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IRVL + P + ++ A + L + L L ++GIV + R Sbjct: 22 IRVLELL---QEGPRPVRDLSAAIEVEPSGLSQQLVVLRQSGIVTSTR 66 >gi|302525629|ref|ZP_07277971.1| transcriptional regulator [Streptomyces sp. AA4] gi|302434524|gb|EFL06340.1| transcriptional regulator [Streptomyces sp. AA4] Length = 110 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 A + ++++AE +S + K L+ L +AG++ RGR Sbjct: 22 LARLTEGEATVNELAEPFEVSLQAVSKHLKVLEQAGLI--SRGR 63 >gi|254694528|ref|ZP_05156356.1| transcriptional regulator GntR family protein [Brucella abortus bv. 3 str. Tulya] Length = 497 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 55 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100 >gi|239833018|ref|ZP_04681347.1| GntR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239825285|gb|EEQ96853.1| GntR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 497 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|229000361|ref|ZP_04159921.1| hypothetical protein bmyco0003_49080 [Bacillus mycoides Rock3-17] gi|228759388|gb|EEM08374.1| hypothetical protein bmyco0003_49080 [Bacillus mycoides Rock3-17] Length = 203 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 ++ + P +QIAE S+ + ++L+ L + GIV Sbjct: 106 IVDDIHSRSAVPMTQTQIAERLGTSKPKVSRVLKQLQEKGIV 147 >gi|229106666|ref|ZP_04236902.1| hypothetical protein bcere0019_54490 [Bacillus cereus Rock3-28] gi|228676777|gb|EEL31387.1| hypothetical protein bcere0019_54490 [Bacillus cereus Rock3-28] Length = 203 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 ++ + P +QIAE S+ + ++L+ L + GIV Sbjct: 106 IVDDIHSRSAVPMTQTQIAERLGTSKPKVSRVLKQLQEKGIV 147 >gi|227831622|ref|YP_002833402.1| TRASH transcription regulator domain protein [Sulfolobus islandicus L.S.2.15] gi|227458070|gb|ACP36757.1| TRASH transcription regulator domain protein [Sulfolobus islandicus L.S.2.15] Length = 163 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 K TD R L D ++++A+ IS ++L+ L + G Sbjct: 3 KLTDLEFRALEIL--REDSRISVTELAKRLNISRSTATRLLRNLSRKG 48 >gi|297190332|ref|ZP_06907730.1| transcriptional regulator marR family protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722430|gb|EDY66338.1| transcriptional regulator marR family protein [Streptomyces pristinaespiralis ATCC 25486] Length = 177 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 4 TKRTDYG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + R Y +R + H P+ I +A A ++ + + LVK G+ GR Sbjct: 45 SLRPRYAPVLRA---LSAHG--PSSIQDLARATGVTHSAASQTVAQLVKEGLATVGPGRD 99 Query: 62 GGVRLC 67 G R+ Sbjct: 100 GRRRIA 105 >gi|182438252|ref|YP_001825971.1| hypothetical protein SGR_4459 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466768|dbj|BAG21288.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 269 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R L+ A D S IA S + L+ L AG+VE VR Sbjct: 189 RRLLELA---DGVRTASDIARTLGRSAFHVLVDLRRLAAAGLVEAVR 232 >gi|227828888|ref|YP_002830668.1| AsnC family transcriptional regulator [Sulfolobus islandicus M.14.25] gi|229580576|ref|YP_002838976.1| AsnC family transcriptional regulator [Sulfolobus islandicus Y.G.57.14] gi|229583433|ref|YP_002841832.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus Y.N.15.51] gi|229586095|ref|YP_002844597.1| AsnC family transcriptional regulator [Sulfolobus islandicus M.16.27] gi|238621080|ref|YP_002915906.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus M.16.4] gi|284999175|ref|YP_003420943.1| regulatory protein, MarR [Sulfolobus islandicus L.D.8.5] gi|227460684|gb|ACP39370.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus M.14.25] gi|228011292|gb|ACP47054.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus Y.G.57.14] gi|228014149|gb|ACP49910.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus Y.N.15.51] gi|228021145|gb|ACP56552.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus M.16.27] gi|238382150|gb|ACR43238.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus M.16.4] gi|284447071|gb|ADB88573.1| regulatory protein, MarR [Sulfolobus islandicus L.D.8.5] gi|323475993|gb|ADX86599.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus REY15A] gi|323478713|gb|ADX83951.1| putative transcriptional regulator, AsnC family [Sulfolobus islandicus HVE10/4] Length = 163 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 K TD R L D ++++A+ IS ++L+ L + G Sbjct: 3 KLTDLEFRALEIL--REDSRISVTELAKRLNISRSTATRLLRNLSRKG 48 >gi|163854272|ref|YP_001642315.1| cyclic nucleotide-binding [Methylobacterium extorquens PA1] gi|163665877|gb|ABY33244.1| cyclic nucleotide-binding [Methylobacterium extorquens PA1] Length = 317 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 19/32 (59%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P + +A+ +S + + ++LQ L + G++E Sbjct: 244 PITQADLADTLGMSCVHINRVLQKLRRDGLIE 275 >gi|114049846|emb|CAK50856.1| putative transcriptional regulator [Streptomyces ambofaciens] gi|114050068|emb|CAK51094.1| putative transcriptional regulator [Streptomyces ambofaciens] Length = 124 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 51 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 97 >gi|116689221|ref|YP_834844.1| IclR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116647310|gb|ABK07951.1| transcriptional regulator, IclR family [Burkholderia cenocepacia HI2424] Length = 274 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|306842953|ref|ZP_07475587.1| transcriptional regulator GntR family protein [Brucella sp. BO2] gi|306286881|gb|EFM58406.1| transcriptional regulator GntR family protein [Brucella sp. BO2] Length = 497 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 55 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100 >gi|302539637|ref|ZP_07291979.1| DeoR-family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457255|gb|EFL20348.1| DeoR-family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 163 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 30 IAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPAD 71 +A +S + + + L + G +G G RL R A Sbjct: 36 LAARLGVSPRTVRRDISRLRELGYPGTATKGPSGYYRLSRGAR 78 >gi|296535786|ref|ZP_06897947.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296263854|gb|EFH10318.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 117 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + H ++A + + + L L +AG++ + R Sbjct: 13 LSQGTR--LETFRLLVRHEPEGLPAGEVARQLDVPQNTMSTHLAVLARAGLLRSER 66 >gi|296131567|ref|YP_003638814.1| transcriptional regulator, GntR family [Thermincola sp. JR] gi|296030145|gb|ADG80913.1| transcriptional regulator, GntR family [Thermincola potens JR] Length = 125 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 20/42 (47%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +++ + ++A ++ + K + L + G + ++ G+ Sbjct: 31 NDEQLPSVRELALELTVNPNTIQKAYRELERQGYIYSIPGKG 72 >gi|291518537|emb|CBK73758.1| AraC-type DNA-binding domain-containing proteins [Butyrivibrio fibrisolvens 16/4] Length = 275 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 9/52 (17%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 L+ T Y H P + +AE S +L ++ Q AGI Sbjct: 174 KLSSITRY-------MKDHYSEPLSLEMMAEQFNYSPSYLSRMFQK--HAGI 216 >gi|291303727|ref|YP_003515005.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572947|gb|ADD45912.1| transcriptional regulator, ArsR family [Stackebrandtia nassauensis DSM 44728] Length = 116 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 +L A P + +A I+ + K L L AG+V G Sbjct: 31 ILAELAA--GGPATATDLAARLPITRQGIAKHLNLLADAGLVTAEPG 75 >gi|271965909|ref|YP_003340105.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509084|gb|ACZ87362.1| putative transcriptional regulator, ArsR family [Streptosporangium roseum DSM 43021] Length = 113 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L A H + I +S+ + L+ L + G++ + R Sbjct: 39 LRILSIVAGHAGGEVCVCDITGVFEVSQPTISHHLKVLKEVGLLVSERRAS 89 >gi|302524571|ref|ZP_07276913.1| IclR-type transcriptional regulator [Streptomyces sp. AA4] gi|302433466|gb|EFL05282.1| IclR-type transcriptional regulator [Streptomyces sp. AA4] Length = 261 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 G+ VL A H P + IA + + +L L AG V Sbjct: 12 GLSVLRLLAGHAG-PVSAAAIARDLDLPRSTTYHLLNELTSAGFVT 56 >gi|256391330|ref|YP_003112894.1| MarR family transcriptional regulator with acetyltransferase activity [Catenulispora acidiphila DSM 44928] gi|256357556|gb|ACU71053.1| transcriptional regulator, MarR family with acetyltransferase activity [Catenulispora acidiphila DSM 44928] Length = 322 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +RVL+ A + + +I E + +L +IL G+V V+GR Sbjct: 39 VRVLLEIAHAGPEGSTVVRIREDLGLDPGYLSRILARFDSEGMV--VKGR 86 >gi|284038117|ref|YP_003388047.1| GntR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817410|gb|ADB39248.1| transcriptional regulator, GntR family [Spirosoma linguale DSM 74] Length = 365 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +N+ IS+++ ++ + K + L + G + +V+G+ Sbjct: 62 NNEQLPSISELSVEYYLARDTVEKAYRELRERGYITSVQGKG 103 >gi|288574604|ref|ZP_06392961.1| transcriptional regulator, GntR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570345|gb|EFC91902.1| transcriptional regulator, GntR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 221 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 IA+ +S + + L+ L GIV+ + GG RL P + Sbjct: 38 IAKRLDVSRTPVREALRKLANEGIVQLI--PNGGARLTAPTKE 78 >gi|257792148|ref|YP_003182754.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|317488767|ref|ZP_07947301.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325833031|ref|ZP_08165658.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] gi|257476045|gb|ACV56365.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243] gi|316912137|gb|EFV33712.1| gntR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325485748|gb|EGC88213.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1] Length = 159 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A I+ + K LV G +E+ RGR Sbjct: 34 GDQLPTVRGLASEISINYNTVNKAYLSLVSDGYLESTRGRG 74 >gi|284032522|ref|YP_003382453.1| Helix-turn-helix type 11 domain-containing protein [Kribbella flavida DSM 17836] gi|283811815|gb|ADB33654.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM 17836] Length = 331 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 +++A +S + + L + G V+ VRG G +L Sbjct: 26 TGAELASRLNVSTRTIRNDVDRLRELGYPVDAVRGPAGHYQLG 68 >gi|218670880|ref|ZP_03520551.1| probable transcriptional regulator protein, ROK family [Rhizobium etli GR56] Length = 243 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++ IH P ++IA ++ + +I+ L+ G++ R R G Sbjct: 22 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG 72 >gi|119491027|ref|XP_001263174.1| O-methyltransferase GliM2 [Neosartorya fischeri NRRL 181] gi|119411334|gb|EAW21277.1| O-methyltransferase GliM2 [Neosartorya fischeri NRRL 181] Length = 433 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Query: 7 TDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53 ++Y A H P ISQ+AEA + E LF+I++ L + G Sbjct: 86 SEYA------LADHVQKLQPCSISQLAEATGLHEQGLFQIVRYLREMGY 128 >gi|187479869|ref|YP_787894.1| AraC family transcriptional regulator [Bordetella avium 197N] gi|115424456|emb|CAJ51010.1| AraC-family transcriptional regulator [Bordetella avium 197N] Length = 279 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 1 MHLTKRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 M + R+ Y R VL + A H + ++AE C+S ++ + L Sbjct: 1 MKPSTRSQYAARLEPVLQWLARHPQATPDLYRLAELACLSPFHFHRVYRAL 51 >gi|16767751|ref|NP_463366.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167551234|ref|ZP_02344989.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991300|ref|ZP_02572399.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234638|ref|ZP_02659696.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243999|ref|ZP_02668931.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464592|ref|ZP_02698495.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821045|ref|ZP_02833045.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444601|ref|YP_002043749.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450357|ref|YP_002048528.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194735969|ref|YP_002117425.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248711|ref|YP_002149462.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265892|ref|ZP_03165966.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242237|ref|YP_002218377.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388693|ref|ZP_03215305.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927164|ref|ZP_03218366.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205355233|ref|YP_002229034.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859633|ref|YP_002246284.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224586332|ref|YP_002640131.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910670|ref|ZP_04654507.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16423073|gb|AAL23325.1| transcriptional repressor for uxu operon [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194403264|gb|ACF63486.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408661|gb|ACF68880.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711471|gb|ACF90692.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632633|gb|EDX51087.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212414|gb|ACH49811.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244147|gb|EDY26767.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291829|gb|EDY31179.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936753|gb|ACH74086.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605791|gb|EDZ04336.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323829|gb|EDZ09024.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205275014|emb|CAR40098.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323822|gb|EDZ11661.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330347|gb|EDZ17111.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337004|gb|EDZ23768.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342210|gb|EDZ28974.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711436|emb|CAR35820.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470860|gb|ACN48690.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249593|emb|CBG27462.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996857|gb|ACY91742.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160989|emb|CBW20525.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915604|dbj|BAJ39578.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084594|emb|CBY94385.1| Exu regulon transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322615677|gb|EFY12597.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618737|gb|EFY15626.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621849|gb|EFY18699.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627574|gb|EFY24365.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630880|gb|EFY27644.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637901|gb|EFY34602.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642263|gb|EFY38870.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643865|gb|EFY40413.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651057|gb|EFY47442.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656688|gb|EFY52976.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659887|gb|EFY56130.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661903|gb|EFY58119.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666350|gb|EFY62528.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672769|gb|EFY68880.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676199|gb|EFY72270.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680683|gb|EFY76721.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684423|gb|EFY80427.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132846|gb|ADX20276.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194240|gb|EFZ79437.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197385|gb|EFZ82525.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201497|gb|EFZ86561.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206011|gb|EFZ90973.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213023|gb|EFZ97825.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215395|gb|EGA00139.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219378|gb|EGA03863.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323228852|gb|EGA12981.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236537|gb|EGA20613.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239963|gb|EGA24010.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241991|gb|EGA26020.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247862|gb|EGA31799.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251499|gb|EGA35370.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258135|gb|EGA41812.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263722|gb|EGA47243.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265684|gb|EGA49180.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270129|gb|EGA53577.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326626185|gb|EGE32530.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630395|gb|EGE36738.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991316|gb|AEF10299.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 257 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +IAE ++ + + L L G+VE RG I +LD Sbjct: 28 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136 S E + C G L R+ L + Q + E +++ R + Sbjct: 76 ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 128 Query: 137 IK 138 ++ Sbjct: 129 LQ 130 >gi|54025779|ref|YP_120021.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017287|dbj|BAD58657.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 162 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ A+ P + IAEA + L +L+ L AG++ R Sbjct: 51 LVMLALWERAPMSVKAIAEAIQLDSPTLSPLLKRLEAAGLITRER 95 >gi|89093743|ref|ZP_01166689.1| biotin operon repressor [Oceanospirillum sp. MED92] gi|89081873|gb|EAR61099.1| biotin operon repressor [Oceanospirillum sp. MED92] Length = 324 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 IR L+ + + + S++ E IS ++K ++ L + G+ + +V+GR G R+ Sbjct: 3 IRSLLSI-LADGKFHSGSELGEKIGISRSAIWKHIRRLEEGGLEIYSVKGR--GYRV--- 56 Query: 70 ADQITILDV 78 + +LDV Sbjct: 57 PGGLNLLDV 65 >gi|170021182|ref|YP_001726136.1| extracellular solute-binding protein [Escherichia coli ATCC 8739] gi|194437390|ref|ZP_03069487.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli 101-1] gi|253774564|ref|YP_003037395.1| extracellular solute-binding protein family 5 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160515|ref|YP_003043623.1| putative transporter subunit periplasmic-binding component of ABC superfamily [Escherichia coli B str. REL606] gi|300930252|ref|ZP_07145665.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 187-1] gi|169756110|gb|ACA78809.1| extracellular solute-binding protein family 5 [Escherichia coli ATCC 8739] gi|194423559|gb|EDX39549.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli 101-1] gi|242376227|emb|CAQ30918.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli BL21(DE3)] gi|253325608|gb|ACT30210.1| extracellular solute-binding protein family 5 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972416|gb|ACT38087.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli B str. REL606] gi|253976626|gb|ACT42296.1| predicted transporter subunit: periplasmic-binding component of ABC superfamily [Escherichia coli BL21(DE3)] gi|300461824|gb|EFK25317.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 187-1] gi|323963435|gb|EGB58997.1| extracellular solute-binding protein [Escherichia coli H489] gi|323972299|gb|EGB67509.1| extracellular solute-binding protein [Escherichia coli TA007] Length = 566 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 IS++AE C SE + +L+ +AG +E + RG+ G +R + + + + Sbjct: 24 VTISELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKCGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|328956062|ref|YP_004373395.1| GntR family transcriptional regulator [Coriobacterium glomerans PW2] gi|328456386|gb|AEB07580.1| transcriptional regulator, GntR family [Coriobacterium glomerans PW2] Length = 240 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N+ + ++ E +S++ + + + L +AG+V T RG Sbjct: 21 RPNERLPTVVELCEIYAVSKITVKRAMDWLTEAGLVTTRRGSG 63 >gi|320547265|ref|ZP_08041557.1| transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320448069|gb|EFW88820.1| transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 106 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y + + + ++ + R +AE CIS L K++ L +V Sbjct: 5 YALVLFI---LNQENGKRCKDLAEILCISPPSLSKLVTKLAHQELVT 48 >gi|319787765|ref|YP_004147240.1| transcriptional repressor, LexA family [Pseudoxanthomonas suwonensis 11-1] gi|317466277|gb|ADV28009.1| transcriptional repressor, LexA family [Pseudoxanthomonas suwonensis 11-1] Length = 212 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACC-ISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 + +++IA+ S K +Q LV G++E V GR+ G+RL Sbjct: 24 LAGGRAPSLAEIADEFGFSSRNAAQKHVQTLVADGLLEQVPGRKRGLRL 72 >gi|303238310|ref|ZP_07324845.1| transcriptional regulator, MarR family [Acetivibrio cellulolyticus CD2] gi|302594014|gb|EFL63727.1| transcriptional regulator, MarR family [Acetivibrio cellulolyticus CD2] Length = 154 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + P IS++AE S + +IL L G VE Sbjct: 53 ETPPTISEVAELTGSSHQNVKQILLKLENIGFVE 86 >gi|300788610|ref|YP_003768901.1| ROK family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798124|gb|ADJ48499.1| ROK family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 387 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 13/71 (18%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-------ETVRGRRG------GV 64 A+ P + +AE +++ + K++ LV+AG++ RGR G G Sbjct: 21 AVSRGGPLTRAALAEVTGLTKSTVSKLVGDLVEAGLLAETGPARAGERGRPGVDVVLSGA 80 Query: 65 RLCRPADQITI 75 R+ +I + Sbjct: 81 RMASLGLEINV 91 >gi|298487440|ref|ZP_07005485.1| transcriptional regulator, GntR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158030|gb|EFH99105.1| transcriptional regulator, GntR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 244 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 44 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102 Query: 81 ATE 83 E Sbjct: 103 LLE 105 >gi|297158862|gb|ADI08574.1| transcriptional regulator, HxlR family protein [Streptomyces bingchenggensis BCW-1] Length = 138 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 15 MYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVE 55 + A P R S+++ +S+ L + L+ L + G+V Sbjct: 40 LALAALAGGPMRYSELSRRLAGVSQKMLTQTLRNLERDGLVT 81 >gi|291009771|ref|ZP_06567744.1| IclR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 274 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 8/67 (11%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCR 68 + ++ A I P ++++ +++ + ++L L +++ GR G G+RL Sbjct: 3 KAMVVLAAVIAEGGPIGLAELTRRTGLAKPTVHRVLTTLRAHQMIDQHGGRYGPGMRL-- 60 Query: 69 PADQITI 75 I++ Sbjct: 61 ---DISV 64 >gi|326201444|ref|ZP_08191315.1| transcriptional regulator, ArsR family [Clostridium papyrosolvens DSM 2782] gi|325988044|gb|EGD48869.1| transcriptional regulator, ArsR family [Clostridium papyrosolvens DSM 2782] Length = 300 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ I+++ A I Q+A+ +S + ++ L KAGIV + R Sbjct: 16 LSSNVR--IKIINLLATEA---LNIKQLAQELGLSSAIVTMHVKKLEKAGIVHSER 66 >gi|254819378|ref|ZP_05224379.1| transcriptional regulator, ArsR family protein [Mycobacterium intracellulare ATCC 13950] Length = 125 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68 +R+ + + + + ++ +A + + + + L+ L AG+V R GR RL Sbjct: 49 VRIAIVLQLRESHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 107 Query: 69 PADQITILDVVKATEE 84 I + V A+E+ Sbjct: 108 HLAHIVVDAVAHASED 123 >gi|296138569|ref|YP_003645812.1| GntR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026703|gb|ADG77473.1| transcriptional regulator, GntR family with aminotransferase domain [Tsukamurella paurometabola DSM 20162] Length = 462 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 + D + +A +S + Q L ++G+V + RGR G Sbjct: 39 LPGDRLPTVRTLARELGVSPATISHGWQALARSGLVVS-RGRSG 81 >gi|257784865|ref|YP_003180082.1| transcriptional regulator, GntR family [Atopobium parvulum DSM 20469] gi|257473372|gb|ACV51491.1| transcriptional regulator, GntR family [Atopobium parvulum DSM 20469] Length = 242 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 23/84 (27%) Query: 21 NDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR--------------GGV- 64 D P +++++ +S + LQ L G++ RGR GG Sbjct: 28 PDDPLPSERELSDSYGLSRTTVRLALQELEHMGLIYRQRGRGTFVADISERATDLMGGYS 87 Query: 65 ------RLCRPADQITI-LDVVKA 81 +L R T+ D ++A Sbjct: 88 FTDQQRQLGRVPKTTTLEFDTIEA 111 >gi|253699950|ref|YP_003021139.1| GntR family transcriptional regulator [Geobacter sp. M21] gi|251774800|gb|ACT17381.1| regulatory protein GntR HTH [Geobacter sp. M21] Length = 240 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITILD 77 + ++AE +S + + L L +G+VET +G GG L + + + + Sbjct: 31 GEKLPPERELAELFGVSRPSVREALNILTSSGLVETYQG--GGTLVRSLVENSAGMPLSE 88 Query: 78 VVKATEESFFV 88 +++ + + Sbjct: 89 LIR-IDGDRAL 98 >gi|190895311|ref|YP_001985604.1| putative ROK family transcriptional regulator [Rhizobium etli CIAT 652] gi|190700972|gb|ACE95054.1| probable transcriptional regulator protein, ROK family [Rhizobium etli CIAT 652] Length = 412 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++ IH P ++IA ++ + +I+ L+ G++ R R G Sbjct: 26 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG 76 >gi|189024964|ref|YP_001935732.1| GntR family transcriptional regulator [Brucella abortus S19] gi|237816257|ref|ZP_04595250.1| Bacterial regulatory protein, GntR family [Brucella abortus str. 2308 A] gi|254690039|ref|ZP_05153293.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 6 str. 870] gi|256258293|ref|ZP_05463829.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 9 str. C68] gi|297247137|ref|ZP_06930855.1| GntR family Bacterial regulatory protein [Brucella abortus bv. 5 str. B3196] gi|189020536|gb|ACD73258.1| Bacterial regulatory protein, GntR family [Brucella abortus S19] gi|237788324|gb|EEP62539.1| Bacterial regulatory protein, GntR family [Brucella abortus str. 2308 A] gi|297174306|gb|EFH33653.1| GntR family Bacterial regulatory protein [Brucella abortus bv. 5 str. B3196] Length = 497 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 55 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100 >gi|168262448|ref|ZP_02684421.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348929|gb|EDZ35560.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 257 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +IAE ++ + + L L G+VE RG I +LD Sbjct: 28 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136 S E + C G L R+ L + Q + E +++ R + Sbjct: 76 ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 128 Query: 137 IK 138 ++ Sbjct: 129 LQ 130 >gi|157692951|ref|YP_001487413.1| manganese transport transcriptional regulator [Bacillus pumilus SAFR-032] gi|167011807|sp|A8FF36|MNTR_BACP2 RecName: Full=Transcriptional regulator mntR; AltName: Full=Manganese transport regulator gi|157681709|gb|ABV62853.1| manganese (Mn2+) transporter transcriptional regulator [Bacillus pumilus SAFR-032] Length = 144 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G++ T +G++ G R Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLILTPKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|71737255|ref|YP_275184.1| GntR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557808|gb|AAZ37019.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 260 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80 I EA +S + L + AG+VET G G L P + T+ DV+ Sbjct: 60 IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 118 Query: 81 ATE 83 E Sbjct: 119 LLE 121 >gi|21243753|ref|NP_643335.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109340|gb|AAM37871.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 534 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFL 41 R L++ H P + +A +S+ L Sbjct: 432 RALVHLGEHYAEPLTLGDLARQAHVSQSHL 461 >gi|82700662|ref|YP_415236.1| GntR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|254696153|ref|ZP_05157981.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 2 str. 86/8/59] gi|254731071|ref|ZP_05189649.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 4 str. 292] gi|260546014|ref|ZP_05821754.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260755575|ref|ZP_05867923.1| GntR family transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758798|ref|ZP_05871146.1| GntR family transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760522|ref|ZP_05872865.1| GntR family transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884599|ref|ZP_05896213.1| GntR family transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|82616763|emb|CAJ11850.1| Bacterial regulatory protein, GntR family:Aminotransferase, class I and II [Brucella melitensis biovar Abortus 2308] gi|260096121|gb|EEW79997.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260669116|gb|EEX56056.1| GntR family transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260670954|gb|EEX57775.1| GntR family transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675683|gb|EEX62504.1| GntR family transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874127|gb|EEX81196.1| GntR family transcriptional regulator [Brucella abortus bv. 9 str. C68] Length = 493 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96 >gi|16763314|ref|NP_458931.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144792|ref|NP_808134.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56416290|ref|YP_153365.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365214|ref|YP_002144851.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213021605|ref|ZP_03336052.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162283|ref|ZP_03347993.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417415|ref|ZP_03350557.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428372|ref|ZP_03361122.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648412|ref|ZP_03378465.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852284|ref|ZP_03381816.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289826559|ref|ZP_06545622.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25325766|pir||AH1066 uxu operon transcription regulator uxuR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505623|emb|CAD03351.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29140431|gb|AAO71994.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130547|gb|AAV80053.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096691|emb|CAR62313.1| uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 257 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +IAE ++ + + L L G+VE RG I +LD Sbjct: 28 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75 Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136 S E + C G L R+ L + Q + E +++ R + Sbjct: 76 ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 128 Query: 137 IK 138 ++ Sbjct: 129 LQ 130 >gi|226944763|ref|YP_002799836.1| GntR family regulatory protein [Azotobacter vinelandii DJ] gi|226719690|gb|ACO78861.1| Bacterial regulatory protein, GntR family [Azotobacter vinelandii DJ] Length = 241 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + Q+AE +S + + + L GI+ + RG Sbjct: 28 LAESRLPTEHQLAEQLNVSRSVIREAVSQLKADGILISRRG 68 >gi|330468152|ref|YP_004405895.1| GntR domain-containing protein [Verrucosispora maris AB-18-032] gi|328811123|gb|AEB45295.1| GntR domain-containing protein [Verrucosispora maris AB-18-032] Length = 220 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 ++ +IAEA +S + + L L G+V +RG + L A + Sbjct: 26 AILEQVHPGGSLVSEGEIAEATGVSRTPVREALLRLETEGLVRLYP-KRGALILPVSARE 84 Query: 73 ITILDVVKA 81 IT DV++A Sbjct: 85 IT--DVIEA 91 >gi|325529375|gb|EGD06299.1| IclR family transcriptional regulator [Burkholderia sp. TJI49] Length = 274 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|313836913|gb|EFS74627.1| putative histidine utilization repressor [Propionibacterium acnes HL037PA2] gi|314971576|gb|EFT15674.1| putative histidine utilization repressor [Propionibacterium acnes HL037PA3] Length = 240 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61 >gi|313632350|gb|EFR99390.1| conserved hypothetical protein [Listeria seeligeri FSL N1-067] gi|313636870|gb|EFS02488.1| conserved hypothetical protein [Listeria seeligeri FSL S4-171] Length = 233 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++A S+ + K+L L + GI+++ + Sbjct: 176 LTYQELANFANTSKSYTSKVLAELREEGILDSQK 209 >gi|302538078|ref|ZP_07290420.1| ArsR2 [Streptomyces sp. C] gi|302446973|gb|EFL18789.1| ArsR2 [Streptomyces sp. C] Length = 128 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 54 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLSSER 100 >gi|289435482|ref|YP_003465354.1| hypothetical protein lse_2121 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171726|emb|CBH28272.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 233 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++A S+ + K+L L + GI+++ + Sbjct: 176 LTYQELANFANTSKSYTSKVLAELREEGILDSQK 209 >gi|284176262|ref|YP_003406539.1| hypothetical protein Htur_5235 [Haloterrigena turkmenica DSM 5511] gi|284017919|gb|ADB63866.1| hypothetical protein Htur_5235 [Haloterrigena turkmenica DSM 5511] Length = 313 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 LT +T + Y D P ++ IAE + ++L L GIV T GR G Sbjct: 89 LTGKT---LEACYYL----DRPRTVADIAERSDNYRNTVNRVLGSLRDRGIVGTDDGRYG 141 >gi|284033497|ref|YP_003383428.1| transcriptional regulator TrmB [Kribbella flavida DSM 17836] gi|283812790|gb|ADB34629.1| transcriptional regulator, TrmB [Kribbella flavida DSM 17836] Length = 151 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL A + ++ IA++ +S+ L +++ L AG+VE Sbjct: 60 VLERLAELPEQSAKVQTIAKSVHLSQSALSRVIGRLETAGLVE 102 >gi|260893577|ref|YP_003239674.1| CBS domain containing protein [Ammonifex degensii KC4] gi|260865718|gb|ACX52824.1| CBS domain containing protein [Ammonifex degensii KC4] Length = 209 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M LT+R + ++ + + P QIAE ++ L L L AG++E R R Sbjct: 1 MELTRRQE----AILGI-VKAEGPITSEQIAERLNVARATLRPDLALLTMAGLLEA-RPR 54 Query: 61 RGGVRLCRPADQI 73 G + ++ Sbjct: 55 VGYYYTGKSPYEV 67 >gi|239980571|ref|ZP_04703095.1| ArsR family transcriptional regulator [Streptomyces albus J1074] Length = 124 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + + A +S+ + L+ L +AG++ + R Sbjct: 45 LRLLSMIASRAGGEVCVCDLTPAFALSQPTISHHLKLLRQAGLIASER 92 >gi|269958116|ref|YP_003327905.1| ArsR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306797|gb|ACZ32347.1| transcriptional regulator, ArsR family [Xylanimonas cellulosilytica DSM 15894] Length = 120 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 IR+L A D I + E +S+ + ++ L +AG+V RG+ + Sbjct: 45 IRLLSIIAAAPDGDACICDLTEPVGLSQPTVSHHMKLLAEAGLVTREQRGKWAHFAIAPD 104 Query: 70 AD 71 A Sbjct: 105 AR 106 >gi|218248510|ref|YP_002373881.1| GntR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061577|ref|YP_003139465.1| GntR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218168988|gb|ACK67725.1| transcriptional regulator, GntR family [Cyanothece sp. PCC 8801] gi|256591743|gb|ACV02630.1| transcriptional regulator, GntR family [Cyanothece sp. PCC 8802] Length = 329 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRP 69 Q+A + + KI Q L ++G+VE++ G GG L P Sbjct: 39 STRQLATITGLHRNTINKIYQQLEESGLVESIAGSGIYVKITSNEGGNLLGSP 91 >gi|147921266|ref|YP_684920.1| hypothetical protein RCIX90 [uncultured methanogenic archaeon RC-I] gi|110620316|emb|CAJ35594.1| hypothetical protein RCIX90 [uncultured methanogenic archaeon RC-I] Length = 581 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 3 LTKR--TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 LT T+Y +Y A+ + S +A+ I ++ +++ L + G++ Sbjct: 11 LTSFGLTEY--EAKVYLALATRGVQKASALADISDIPRPHVYSVIKLLHEKGLI 62 >gi|75909546|ref|YP_323842.1| Crp/FNR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703271|gb|ABA22947.1| transcriptional regulator, Crp/Fnr family [Anabaena variabilis ATCC 29413] Length = 207 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%) Query: 12 RVLMYC--AIHNDYPN-----RISQIAEACCISELFLFKILQPLVKAGIVE 55 RVL Y A H + +IAE +S+ L ++L L K G + Sbjct: 142 RVLRYLEIAAHPHGNIVNLDKPLKEIAEDMGLSQEALSRVLSQLQKDGAIT 192 >gi|88854585|ref|ZP_01129252.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] gi|88816393|gb|EAR26248.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] Length = 131 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + Q+A I+ + + + L G + + RGR G V RP D +L + Sbjct: 44 LAGTKLATVRQLATDLGIAPNTVARAYRELEADGFLLS-RGRNGTVVKARPGDAAALLQL 102 >gi|116671117|ref|YP_832050.1| IclR family transcriptional regulator [Arthrobacter sp. FB24] gi|116611226|gb|ABK03950.1| transcriptional regulator, IclR family [Arthrobacter sp. FB24] Length = 244 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGG 63 GIR L A + P I+++A+A + ++IL+ L ++ + G G Sbjct: 25 GIRALEILA-EAEQPLTIAELADAMGVHRSVAYRILRTLEDHSLLVRDDAGKVQPGP-GL 82 Query: 64 VRLCR 68 L R Sbjct: 83 AVLAR 87 >gi|313124352|ref|YP_004034611.1| transcriptional regulator, gntr family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280915|gb|ADQ61634.1| Transcriptional regulator, GntR family [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 124 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ + ++A + + K L + G V +V+GR Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72 >gi|256157799|ref|ZP_05455717.1| Bacterial regulatory protein, GntR family [Brucella ceti M490/95/1] gi|256253237|ref|ZP_05458773.1| Bacterial regulatory protein, GntR family [Brucella ceti B1/94] gi|261220348|ref|ZP_05934629.1| transcriptional regulator [Brucella ceti B1/94] gi|265996305|ref|ZP_06108862.1| transcriptional regulator [Brucella ceti M490/95/1] gi|260918932|gb|EEX85585.1| transcriptional regulator [Brucella ceti B1/94] gi|262550602|gb|EEZ06763.1| transcriptional regulator [Brucella ceti M490/95/1] Length = 257 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + IAE IS + + K + LVKAG++ G Sbjct: 45 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLLVRRHGSG 85 >gi|239981129|ref|ZP_04703653.1| GntR family transcriptional regulator [Streptomyces albus J1074] gi|291452997|ref|ZP_06592387.1| gntR-family transcriptional regulator [Streptomyces albus J1074] gi|291355946|gb|EFE82848.1| gntR-family transcriptional regulator [Streptomyces albus J1074] Length = 235 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 8/63 (12%) Query: 11 IRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R Y A H D +A+ +S + + + L G+VET G GG L Sbjct: 22 LRA--YAAEHRLAAGDRLPAERDLAQRLGVSRASVKQAVVVLEVQGLVETRHG--GGTYL 77 Query: 67 CRP 69 R Sbjct: 78 LRD 80 >gi|218887040|ref|YP_002436361.1| AraC family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757994|gb|ACL08893.1| transcriptional regulator, AraC family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 338 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 16/39 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49 +R P ++++AEA +S ++ LV Sbjct: 69 VRAACDTLRQRAEPVPLAELAEAAGLSPSHFQRVFTRLV 107 >gi|254420829|ref|ZP_05034553.1| transcriptional regulator, ArsR family protein [Brevundimonas sp. BAL3] gi|196187006|gb|EDX81982.1| transcriptional regulator, ArsR family protein [Brevundimonas sp. BAL3] Length = 111 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ H +I+ I L L L +AG++ + R Sbjct: 21 AFRLLV---RHEPGGLPAGEISNHLAIPANTLSSHLGVLTRAGLIRSER 66 >gi|220921624|ref|YP_002496925.1| IclR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946230|gb|ACL56622.1| transcriptional regulator, IclR family [Methylobacterium nodulans ORS 2060] Length = 297 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR------GG 63 G+ +L A P +S +A+ +S + L L+ AG+ + G G Sbjct: 41 GLHLLASLAACGG-PVPLSAVAQRAGVSPSQAHRYLSSLMAAGMAKQDPGTGFYDLDAGA 99 Query: 64 VRLCRPA---------DQITILDVVKAT 82 +RL A +T +D +AT Sbjct: 100 IRLGLAALARIDVFARADVTFMDFARAT 127 >gi|111225428|ref|YP_716222.1| MarR family transcriptional regulator [Frankia alni ACN14a] gi|111152960|emb|CAJ64708.1| Putative MarR-family transcriptional regulator [Frankia alni ACN14a] Length = 173 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL+ A + R+S++A+A +S L +++ L + G+V Sbjct: 57 VLVQLAEAPNRELRMSELAQAVLLSRSGLTRLVDRLEREGLVT 99 >gi|119715528|ref|YP_922493.1| regulatory proteins, IclR [Nocardioides sp. JS614] gi|119536189|gb|ABL80806.1| regulatory protein, IclR [Nocardioides sp. JS614] Length = 226 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++ D G+RVL A +D ++++A ++ +++++ L + +V Sbjct: 20 SQTLDRGLRVLDVLARASDG-LTVTELAARLEVNRTVVYRLVSTLEQHALVR 70 >gi|70999217|ref|XP_754330.1| O-methyltransferase GliM-like [Aspergillus fumigatus Af293] gi|66851967|gb|EAL92292.1| O-methyltransferase GliM-like, putative [Aspergillus fumigatus Af293] gi|159127347|gb|EDP52462.1| O-methyltransferase GliM2 [Aspergillus fumigatus A1163] Length = 433 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Query: 7 TDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53 ++Y A H P ISQ+AEA + E LF+I++ L + G Sbjct: 86 SEYA------LADHVQKLQPCSISQLAEATGLHEQGLFQIVRYLREMGY 128 >gi|325262860|ref|ZP_08129596.1| transcriptional regulator, GntR family [Clostridium sp. D5] gi|324031954|gb|EGB93233.1| transcriptional regulator, GntR family [Clostridium sp. D5] Length = 122 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L ++G+V + R Sbjct: 31 GDKLPSVRDLALDASVNPNTMQKALSELERSGLVYSQR 68 >gi|297530094|ref|YP_003671369.1| GntR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297253346|gb|ADI26792.1| transcriptional regulator, GntR family [Geobacillus sp. C56-T3] Length = 237 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A S + K L L + G ++ ++G+ Sbjct: 26 DKLPSEHELAARYETSRETIRKALHLLSEHGYIQKMKGKG 65 >gi|320010052|gb|ADW04902.1| regulatory protein ArsR [Streptomyces flavogriseus ATCC 33331] Length = 370 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +R+ A P ++A++ I+ + + L L KAG+ T R RG L Sbjct: 299 MRICRNLAR---SPYTTGELADSLGITPPEVSRHLGVLKKAGLATTRR--RGRYVL 349 >gi|256374947|ref|YP_003098607.1| MarR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919250|gb|ACU34761.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM 43827] Length = 167 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 26/46 (56%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ A D R++++A+A +S + +++ L ++G+V R Sbjct: 65 VLVQLAERPDRRMRMTELADAVLLSRSGVTRLVDRLERSGLVLRER 110 >gi|297198658|ref|ZP_06916055.1| DeoR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197714593|gb|EDY58627.1| DeoR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 349 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 + +A+ ++ + + + L + G V G GG +L A+ Sbjct: 21 SGADLADRLGVTARTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 67 >gi|167464080|ref|ZP_02329169.1| hypothetical protein Plarl_16234 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 445 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRLCR 68 +L Y ++ + +IA+ +SE ++ ++ G+V T G +L + Sbjct: 15 ILRYIESLKLGTKISVRKIADQLEVSEGTAYRAIKEAENLGLVSTKERVGTVRVGKKLRQ 74 Query: 69 PADQITILDVVKATEESF 86 D++T +VV + Sbjct: 75 NIDKLTFGEVVNIVDGEV 92 >gi|220925323|ref|YP_002500625.1| AsnC family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949930|gb|ACL60322.1| transcriptional regulator, AsnC family [Methylobacterium nodulans ORS 2060] Length = 159 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++ + D +++A+ +S + +Q L + G + VR Sbjct: 17 MLRL-LQEDGRLTNAELAQRVNLSPATCHRRMQRLFRGGFITGVR 60 >gi|163739261|ref|ZP_02146672.1| transcriptional regulator, DeoR family protein [Phaeobacter gallaeciensis BS107] gi|161387331|gb|EDQ11689.1| transcriptional regulator, DeoR family protein [Phaeobacter gallaeciensis BS107] Length = 272 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R ++A+ +SE + + ++ L K G+V+ V GG L P Sbjct: 16 GGSARSGELAKVLGVSEETVRRTIKALAKQGLVQRV---HGGAYLSGP 60 >gi|120610773|ref|YP_970451.1| ArsR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589237|gb|ABM32677.1| transcriptional regulator, ArsR family [Acidovorax citrulli AAC00-1] Length = 255 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 8/79 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R M A+ + ++A A IS + L LV AG++ +GR L Sbjct: 29 RAAMLLALMDGRALTARELAGAARISAATASRHLALLVDAGLLAVRSQGRHRYHALAG-- 86 Query: 71 DQITILDVVKATEESFFVA 89 DV + E Sbjct: 87 -----ADVARLLEGLMQFT 100 >gi|21322789|dbj|BAB97418.1| Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Corynebacterium glutamicum ATCC 13032] Length = 471 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 AI+ P I +IA + L +L+ LV+AG+V Sbjct: 419 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVAT 458 >gi|57642048|ref|YP_184526.1| hypothetical protein TK2113 [Thermococcus kodakarensis KOD1] gi|57160372|dbj|BAD86302.1| hypothetical protein, conserved [Thermococcus kodakarensis KOD1] Length = 306 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 26/89 (29%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----------ETV 57 +Y I LM + D I++IAE S + ++ L + GI+ + Sbjct: 153 EYAI--LMDI-LKWDARTPITEIAEKLGKSRPTVRYMINRLKEKGILINFVPLPDMNVSD 209 Query: 58 RGRRGGVRLCRPAD----------QITIL 76 RG G + + D +IT+ Sbjct: 210 RGIIG---IAKELDEEVLKRFNDYEITVG 235 >gi|56420155|ref|YP_147473.1| GntR family transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56379997|dbj|BAD75905.1| transcriptional regulator (GntR family) [Geobacillus kaustophilus HTA426] Length = 125 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 21/49 (42%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 V+ +D + +A+ ++ + K + L + G + ++ G+ Sbjct: 24 VIRELWRPHDQLPSVRTMAKQLMVNPNTIQKAYRELERDGWIYSIPGKG 72 >gi|315646635|ref|ZP_07899752.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] gi|315277961|gb|EFU41282.1| transcriptional regulator, ArsR family protein [Paenibacillus vortex V453] Length = 305 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 +R+L Y A D P +S++A L L L AG++ + Sbjct: 232 LRLLRYIA---DEPKAVSEMATELGQPYEDLMHHLMILRAAGLLRSH 275 >gi|283786778|ref|YP_003366643.1| ArsR-family transcriptional regulator [Citrobacter rodentium ICC168] gi|282950232|emb|CBG89868.1| ArsR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 99 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ C + ++A+ +S + L + + G++E+ R Sbjct: 26 RLLILCMLCGSPGTSAGELAKITGLSPSATSQHLARMREEGLIESRR 72 >gi|257469212|ref|ZP_05633306.1| GntR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063460|ref|ZP_07927945.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689136|gb|EFS25971.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 462 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 Y ++ ++ I ++A+ +S + K + L K G + +RG G Sbjct: 19 YKLKEMIENGEIKGKIFSIRELAKNLGVSISTVVKAYEQLEKNGYIY-LRGGSGAY 73 >gi|239945796|ref|ZP_04697733.1| transcription regulator ArsR [Streptomyces roseosporus NRRL 15998] gi|239992267|ref|ZP_04712931.1| transcription regulator ArsR [Streptomyces roseosporus NRRL 11379] Length = 126 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I + +S+ + L+ L +AG++ + R Sbjct: 50 LRLFSKVASHPGGEACVCDI-QDVGVSQPTVSHHLKKLREAGLLTSQR 96 >gi|271968295|ref|YP_003342491.1| helix-turn-helix type 11 domain-containing protein [Streptosporangium roseum DSM 43021] gi|270511470|gb|ACZ89748.1| helix-turn-helix, type 11 domain-containing protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 6 RTD--YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRG 62 RTD Y + + + + ++A +S + + + L +AG+ V G RG Sbjct: 3 RTDRLYAL--VEELSAVSPRFRSARELAAGFEVSVRTVERDVSALQQAGVPVHAEPGGRG 60 Query: 63 GVRLCRP 69 L R Sbjct: 61 SYALGRS 67 >gi|158424673|ref|YP_001525965.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158331562|dbj|BAF89047.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 413 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 R L+ + P +++IA +S L ++ Sbjct: 298 RALLLMEQNLAEPLSVAEIARRLAVSPRQLERLFAE 333 >gi|154252913|ref|YP_001413737.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1] gi|154156863|gb|ABS64080.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1] Length = 113 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRR 61 + P + +IAEA +S + L+ L A +V RG++ Sbjct: 47 EGPRSVGEIAEALGLSLSLVSHHLRLLRAARLVTADRRGKQ 87 >gi|27366042|ref|NP_761570.1| glycerol-3-phosphate regulon repressor [Vibrio vulnificus CMCP6] gi|27362242|gb|AAO11097.1| Glycerol-3-phosphate regulon repressor, DeoR family [Vibrio vulnificus CMCP6] Length = 257 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +L Y + ++E +S + K + L G+V R GG+ L Sbjct: 14 ILAYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISL 63 >gi|307330666|ref|ZP_07609805.1| putative transcriptional regulator, ArsR family [Streptomyces violaceusniger Tu 4113] gi|306883727|gb|EFN14774.1| putative transcriptional regulator, ArsR family [Streptomyces violaceusniger Tu 4113] Length = 371 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 S++A +S + L +AG+V T+R Sbjct: 288 GGGCTTSELARRVGVSLASASQHASVLREAGLVHTLR 324 >gi|297197993|ref|ZP_06915390.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146957|gb|EDY59038.2| IclR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 185 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64 + D + VL A + ++AEA + + F++L L G+VE G RG Sbjct: 17 QSVDRAVTVLEILAQRGEAGVS--EVAEAIDVHKSTAFRLLGALEAHGMVE-QEGERGKY 73 Query: 65 RLC 67 RL Sbjct: 74 RLG 76 >gi|134133938|gb|ABO61027.1| putative transcriptional regulator IclR-type [Pseudomonas reinekei] Length = 265 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R + + H + +S++A+ +S+ +IL L + G V+ Sbjct: 19 RCMAVISSYTHQSAASTLSEVAKRTGLSKPTARRILLTLEQLGYVK 64 >gi|239627300|ref|ZP_04670331.1| sigma-54 dependent transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517446|gb|EEQ57312.1| sigma-54 dependent transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 698 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 41 LFKILQPLVKAGIVETVRGRRG 62 + K L L G V +VRGR G Sbjct: 653 VRKALSKLSAHGFVRSVRGRGG 674 >gi|251799263|ref|YP_003013994.1| GntR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546889|gb|ACT03908.1| transcriptional regulator, GntR family [Paenibacillus sp. JDR-2] Length = 129 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 11/94 (11%) Query: 11 IRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 +R L+ + I ++A+ S + + ++ Q L G++ T +G G + R Sbjct: 23 LRALIVSGQLEEGILLPSIRELAQLLKCSVITVRRVYQDLENEGLLRTKQGT--GTYVAR 80 Query: 69 ----PADQITILDVVKATE---ESFFVAECFASH 95 D+ + V +A E E+ + +C Sbjct: 81 IEQNAMDRYRLDAVTEALEAAVEAGKLVQCTREE 114 >gi|163742021|ref|ZP_02149410.1| transcriptional regulator, DeoR family protein [Phaeobacter gallaeciensis 2.10] gi|161384742|gb|EDQ09122.1| transcriptional regulator, DeoR family protein [Phaeobacter gallaeciensis 2.10] Length = 278 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R ++A+ +SE + + ++ L K G+V+ V GG L P Sbjct: 22 GGSARSGELAKVLGVSEETVRRTIKALAKQGLVQRV---HGGAYLSGP 66 >gi|126724951|ref|ZP_01740794.1| Pyruvate dehydrogenase complex repressor [Rhodobacterales bacterium HTCC2150] gi|126706115|gb|EBA05205.1| Pyruvate dehydrogenase complex repressor [Rhodobacterales bacterium HTCC2150] Length = 255 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 11/61 (18%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + ++AE +S L + L G++ + G I + DV Sbjct: 29 RPGERLPAERELAERLGVSRPSLRDAIAQLQNDGLLSSKAGSG-----------IFVADV 77 Query: 79 V 79 + Sbjct: 78 L 78 >gi|126664347|ref|ZP_01735331.1| regulatory protein GntR, HTH [Marinobacter sp. ELB17] gi|126630673|gb|EBA01287.1| regulatory protein GntR, HTH [Marinobacter sp. ELB17] Length = 263 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A+ +AE +S L + +Q LV G++ + +G Sbjct: 27 ALKPGERLPAERALAEQFGVSRPSLREAVQKLVTKGLLISRQGGG 71 >gi|167033692|ref|YP_001668923.1| AraC family transcriptional regulator [Pseudomonas putida GB-1] gi|166860180|gb|ABY98587.1| transcriptional regulator, AraC family [Pseudomonas putida GB-1] Length = 351 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 10 GIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51 G+R L + + P I +IAE +S L ++ + V+A Sbjct: 238 GVRLALELMHANIEDPIGIDEIAEHAGLSRRHLERLFRRHVQA 280 >gi|126465361|ref|YP_001040470.1| DEAD/DEAH box helicase domain-containing protein [Staphylothermus marinus F1] gi|126014184|gb|ABN69562.1| DEAD/DEAH box helicase domain protein [Staphylothermus marinus F1] Length = 612 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 R+L+ + P + I+E + + K ++ L G+V Sbjct: 436 RILVVL---SGKPMPLGWISEITGMPRDMVEKAIRRLEDKGLV 475 >gi|331092284|ref|ZP_08341112.1| hypothetical protein HMPREF9477_01755 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401716|gb|EGG81295.1| hypothetical protein HMPREF9477_01755 [Lachnospiraceae bacterium 2_1_46FAA] Length = 289 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58 L Y + H I IA+ IS +L K+ L A + R Sbjct: 189 LQYVSEHFQEKILIPDIAKELNISTRYLGKLFSRHMNLTLANYINIYR 236 >gi|294023753|ref|YP_003547072.1| GntR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677533|dbj|BAI99049.1| GntR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 205 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 AI +P + ++AE +S L + LV I+E + GG +L P+ + ++ D Sbjct: 23 AIKPGWPLNLQRLAEEFNVSVSPLRDAMHRLVGERIIEAL--PVGGFQLPIPSKE-SLHD 79 Query: 78 VV 79 + Sbjct: 80 LY 81 >gi|271965749|ref|YP_003339945.1| MarR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508924|gb|ACZ87202.1| hypothetical protein Sros_4315 [Streptosporangium roseum DSM 43021] Length = 171 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 20/35 (57%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 D P R++ +A +S+ + +++ L + G+VE Sbjct: 54 GDGPMRLTDLARTEQVSQPGITQLVTRLERDGLVE 88 >gi|260583440|ref|ZP_05851188.1| biotin-[acetyl-CoA-carboxylase] ligase [Granulicatella elegans ATCC 700633] gi|260158066|gb|EEW93134.1| biotin-[acetyl-CoA-carboxylase] ligase [Granulicatella elegans ATCC 700633] Length = 331 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 VL+Y ++ P ++A A S ++K +Q L K G +++ G L Sbjct: 7 VLLYLQENSGEPISGEKMALALNKSRTSIWKAIQSLKKEGYAIDSS--TNKGYTLSEN 62 >gi|240949454|ref|ZP_04753794.1| fatty acid metabolism regulator [Actinobacillus minor NM305] gi|240296027|gb|EER46688.1| fatty acid metabolism regulator [Actinobacillus minor NM305] Length = 241 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 18/33 (54%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 ++AE ++ L ++LQ L + G ++ G+ Sbjct: 39 RELAERIGVTRTTLREVLQRLARDGWLQIQHGK 71 >gi|239980319|ref|ZP_04702843.1| ArsR family transcriptional regulator [Streptomyces albus J1074] Length = 315 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R L SQ+A +S + L ++G++ T R Sbjct: 238 ALRALT-------STCTTSQLAARLGVSPGSASQHASILRESGLITTRR 279 >gi|257067966|ref|YP_003154221.1| putative transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558784|gb|ACU84631.1| predicted transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 120 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 6/81 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 + ++ + + +AE +S + L L AGIV R R Sbjct: 34 LHLVTLM---SGGRFDVGTLAEKVGLSLPTTSQHLSKLRLAGIVSARRAGRHSYYTVEDP 90 Query: 71 DQITILD-VVKAT--EESFFV 88 +++++ + + + S Sbjct: 91 HVLSLVEQIFEHIAPDGSLAP 111 >gi|256390302|ref|YP_003111866.1| IclR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356528|gb|ACU70025.1| transcriptional regulator, IclR family [Catenulispora acidiphila DSM 44928] Length = 257 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +RVL A ++++AE +++ + +L+ L G+V Sbjct: 8 AVRVLRELAA-GGPRLGVTELAERVGVAKPTVHALLRTLEGEGLV 51 >gi|269925469|ref|YP_003322092.1| iron (metal) dependent repressor, DtxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789129|gb|ACZ41270.1| iron (metal) dependent repressor, DtxR family [Thermobaculum terrenum ATCC BAA-798] Length = 247 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 MYC + P +++AE +S + ++ + + G+V+ RG++ + L QI Sbjct: 23 MYCLRRENQPLIGARLAEWLDVSPASVTGMIHRMSQEGLVQVGRGKQ--ITLTTKGWQIA 80 Query: 75 I 75 + Sbjct: 81 L 81 >gi|254517923|ref|ZP_05129979.1| regulatory protein GntR [Clostridium sp. 7_2_43FAA] gi|226911672|gb|EEH96873.1| regulatory protein GntR [Clostridium sp. 7_2_43FAA] Length = 127 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 19/41 (46%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +++ I+ + K L K IVE+++G+ Sbjct: 32 GDKLPSVRELSTILTINPNTVSKAYMELEKQNIVESIKGKG 72 >gi|297200628|ref|ZP_06918025.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297147688|gb|EDY53793.2| GntR family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 294 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +AE +S + ++L L G +E+ RG Sbjct: 34 RALAEEFEVSRDTIQRVLMELKTEGWIESRRGSG 67 >gi|239813179|ref|YP_002942089.1| transcriptional regulator, IclR family [Variovorax paradoxus S110] gi|239799756|gb|ACS16823.1| transcriptional regulator, IclR family [Variovorax paradoxus S110] Length = 244 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + D +RVL A + +++AEA + + L++ + L + G V GR Sbjct: 8 SAHNDRALRVLSVLA-QSKSAMSAAELAEATGLVKSTLYRQIAVLRRWGFVMETDGR 63 >gi|261419945|ref|YP_003253627.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319766759|ref|YP_004132260.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376402|gb|ACX79145.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC61] gi|317111625|gb|ADU94117.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC52] Length = 237 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A S + K L L + G ++ ++G+ Sbjct: 26 DKLPSEHELAARYETSRETIRKALHLLSEHGYIQKMKGKG 65 >gi|254437156|ref|ZP_05050650.1| NAD dependent epimerase/dehydratase family [Octadecabacter antarcticus 307] gi|198252602|gb|EDY76916.1| NAD dependent epimerase/dehydratase family [Octadecabacter antarcticus 307] Length = 927 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 14/80 (17%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP----------LVKAGIVET-VRG 59 + +++ D P ++A + L +++ L + GI+ T G Sbjct: 555 VTLMLELESAYDRPIDF-ELA--MNVPLHRLDQLMTQEADAPAPTDDLDRPGILLTGATG 611 Query: 60 RRGGVRLCRPADQITILDVV 79 GG L + A + + DVV Sbjct: 612 FLGGHVLAQAARDLPVGDVV 631 >gi|206563030|ref|YP_002233793.1| IclR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039070|emb|CAR55033.1| IclR family regulatory protein [Burkholderia cenocepacia J2315] Length = 250 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVRLCR 68 L+ + ++ +A I + L ++L L G+V GR+ G RL R Sbjct: 13 ALLEHLVQAGDAVSLADLARDVDIPKASLHRMLASLEAGGLVIREPGRKNAYAVGPRLAR 72 >gi|182416943|ref|ZP_02948327.1| transcriptional regulatory protein [Clostridium butyricum 5521] gi|237667849|ref|ZP_04527833.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379241|gb|EDT76742.1| transcriptional regulatory protein [Clostridium butyricum 5521] gi|237656197|gb|EEP53753.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT E BL5262] Length = 245 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 18/33 (54%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A++ +S L + L L G+++ ++G+ Sbjct: 42 DLAKSLGVSRTTLRQALALLQDDGLIKNIQGKG 74 >gi|21225122|ref|NP_630901.1| transcription regulator ArsR [Streptomyces coelicolor A3(2)] gi|6900926|emb|CAB71918.1| putative ArsR-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 117 Score = 34.2 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLC 67 +R+ A H + + IA+ +S+ + L+ L +AG++ + RG RL Sbjct: 46 LRLFSKVASHPEGEACVCDIAD-VGVSQPTVSHHLKKLREAGLLLSERRGTWVYYRLA 102 >gi|328906900|gb|EGG26666.1| putative histidine utilization repressor [Propionibacterium sp. P08] Length = 237 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 18 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 58 >gi|327311906|ref|YP_004338803.1| Fis family transcriptional regulator [Thermoproteus uzoniensis 768-20] gi|326948385|gb|AEA13491.1| transcriptional regulator, Fis family [Thermoproteus uzoniensis 768-20] Length = 273 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 4/45 (8%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R L +++A + L K L L + G + Sbjct: 214 LRTL----EEGGGRMPRAELARRLGLPASTLHKHLHKLSRYGYLR 254 >gi|326334010|ref|ZP_08200239.1| toxin-antitoxin system, antitoxin component, ArsR family [Nocardioidaceae bacterium Broad-1] gi|325948159|gb|EGD40270.1| toxin-antitoxin system, antitoxin component, ArsR family [Nocardioidaceae bacterium Broad-1] Length = 105 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 A P + +IA+A +S + + L+ L +AG+V Sbjct: 17 LARVAAGPCSVGEIADALPVSMAAVSQHLKVLREAGLV 54 >gi|314929497|gb|EFS93328.1| putative histidine utilization repressor [Propionibacterium acnes HL044PA1] Length = 240 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AE IS + + + + LV +G++E RG Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61 >gi|302669340|ref|YP_003832490.1| bifunctional biotin--acetyl-CoA-carboxylase ligase/biotin operon [Butyrivibrio proteoclasticus B316] gi|302397004|gb|ADL35908.1| bifunctional biotin--acetyl-CoA-carboxylase ligase/biotin operon [Butyrivibrio proteoclasticus B316] Length = 281 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 +VL +++A IS ++K ++ L G +E+V G RL + Sbjct: 11 KVLAMLENSRGDFVSGAEMASGLGISRNAIWKAIKELKVQGYSIESV--TNKGYRLSKDN 68 Query: 71 DQIT 74 D I+ Sbjct: 69 DIIS 72 >gi|291546936|emb|CBL20044.1| transcriptional regulator, GntR family [Ruminococcus sp. SR1/5] Length = 125 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 20/89 (22%) Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 M +T + ++M A D + Q+A I+ + K L + G V Sbjct: 15 MQITNQ------IIMGIATSRLHEGDTLPSVRQLASIAGINMHTVNKAYALLRQEGFVTI 68 Query: 57 VRGRRGGVRLCRPADQITI-LDVVKATEE 84 R R I+I D V+A EE Sbjct: 69 DR---------RKGAVISIDADKVRALEE 88 >gi|302867403|ref|YP_003836040.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029] gi|302570262|gb|ADL46464.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029] Length = 108 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 8/82 (9%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPADQITILD--- 77 + P +++AEA S L L L G+V V GRR L + D Sbjct: 31 EGPGYPAELAEALGTSRQNLSNHLACLRGCGLVVAVPEGRRTRYELAEARLAHALGDLVG 90 Query: 78 VVKATEESFFVAECFASHKIDC 99 VV A + A C + C Sbjct: 91 VVLAVD----PAACPDAADGCC 108 >gi|197119276|ref|YP_002139703.1| GntR family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088636|gb|ACH39907.1| transcriptional regulator, GntR family [Geobacter bemidjiensis Bem] Length = 240 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITILD 77 + ++AE +S + + L L +G+VET +G GG L + + + + Sbjct: 31 GEKLPPERELAELFGVSRPSVREALNILTSSGLVETYQG--GGTLVRSLVENSAGMPLSE 88 Query: 78 VVKATEESFFV 88 +++ + + Sbjct: 89 LIR-IDGDRAL 98 >gi|34498492|ref|NP_902707.1| pyruvate dehydrogenase complex repressor [Chromobacterium violaceum ATCC 12472] gi|34104347|gb|AAQ60706.1| pyruvate dehydrogenase complex repressor [Chromobacterium violaceum ATCC 12472] Length = 256 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R+L D Q+AE +S L + +Q L G++ + +G Sbjct: 22 RILDGVLKPGDRLPPERQLAEEFGVSRPSLREAIQQLTSRGLLSSRQGGG 71 >gi|33592909|ref|NP_880553.1| transcriptional regulator [Bordetella pertussis Tohama I] gi|33572557|emb|CAE42137.1| probable transcriptional regulator [Bordetella pertussis Tohama I] gi|332382322|gb|AEE67169.1| transcriptional regulator [Bordetella pertussis CS] Length = 246 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 RVL A + P ++ +AE +++ L++ + L + G V G Sbjct: 12 RVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGA 62 >gi|15839886|ref|NP_334923.1| GntR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31791675|ref|NP_854168.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|57116742|ref|NP_215008.2| GntR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|121636411|ref|YP_976634.1| GntR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660262|ref|YP_001281785.1| GntR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148821694|ref|YP_001286448.1| GntR family transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970682|ref|ZP_02552959.1| hypothetical transcriptional regulatory protein, gntR-family [Mycobacterium tuberculosis H37Ra] gi|215402257|ref|ZP_03414438.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215410016|ref|ZP_03418824.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215425725|ref|ZP_03423644.1| GntR family transcriptional regulator [Mycobacterium tuberculosis T92] gi|215429318|ref|ZP_03427237.1| GntR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|218752130|ref|ZP_03530926.1| GntR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|224988883|ref|YP_002643570.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797424|ref|YP_003030425.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis KZN 1435] gi|254363457|ref|ZP_04979503.1| hypothetical transcriptional regulatory protein (probably gntR-family) [Mycobacterium tuberculosis str. Haarlem] gi|254549444|ref|ZP_05139891.1| transcriptional regulator, gntR-family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185364|ref|ZP_05762838.1| transcriptional regulator, gntR-family protein [Mycobacterium tuberculosis CPHL_A] gi|260199495|ref|ZP_05766986.1| transcriptional regulator, gntR-family protein [Mycobacterium tuberculosis T46] gi|260203648|ref|ZP_05771139.1| transcriptional regulator, gntR-family protein [Mycobacterium tuberculosis K85] gi|289441878|ref|ZP_06431622.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis T46] gi|289446039|ref|ZP_06435783.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis CPHL_A] gi|289552746|ref|ZP_06441956.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis KZN 605] gi|289573082|ref|ZP_06453309.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis K85] gi|289744202|ref|ZP_06503580.1| transcriptional regulatory protein, gntR-family [Mycobacterium tuberculosis 02_1987] gi|289748987|ref|ZP_06508365.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis T92] gi|289752527|ref|ZP_06511905.1| GntR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289760614|ref|ZP_06519992.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|294996002|ref|ZP_06801693.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 210] gi|297632981|ref|ZP_06950761.1| GntR family transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297729956|ref|ZP_06959074.1| GntR family transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298523973|ref|ZP_07011382.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313657285|ref|ZP_07814165.1| GntR family transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|54039959|sp|P67740|Y505_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator Mb0505 gi|54042800|sp|P67739|Y494_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0494/MT0514 gi|13880022|gb|AAK44737.1| transcriptional regulator, GntR family [Mycobacterium tuberculosis CDC1551] gi|31617261|emb|CAD93368.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) [Mycobacterium bovis AF2122/97] gi|38490193|emb|CAB00955.2| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|121492058|emb|CAL70521.1| Probable transcriptional regulatory protein (probably gntR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134148971|gb|EBA41016.1| hypothetical transcriptional regulatory protein (probably gntR-family) [Mycobacterium tuberculosis str. Haarlem] gi|148504414|gb|ABQ72223.1| GntR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148720221|gb|ABR04846.1| hypothetical transcriptional regulatory protein, gntR-family [Mycobacterium tuberculosis F11] gi|224771996|dbj|BAH24802.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253318927|gb|ACT23530.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis KZN 1435] gi|289414797|gb|EFD12037.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis T46] gi|289418997|gb|EFD16198.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis CPHL_A] gi|289437378|gb|EFD19871.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis KZN 605] gi|289537513|gb|EFD42091.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis K85] gi|289684730|gb|EFD52218.1| transcriptional regulatory protein, gntR-family [Mycobacterium tuberculosis 02_1987] gi|289689574|gb|EFD57003.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis T92] gi|289693114|gb|EFD60543.1| GntR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289708120|gb|EFD72136.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|298493767|gb|EFI29061.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326902322|gb|EGE49255.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis W-148] gi|328457210|gb|AEB02633.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis KZN 4207] Length = 242 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84 +AE ++ L + L L + G++E G + R + +T VV+A Sbjct: 46 RDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSG---SVVRDPEGLTHPAVVEALVRKLG 102 Query: 85 SFFVAECFASHKIDCPLVGS 104 F+ E PL+G Sbjct: 103 PDFLVELLEIRAALGPLIGR 122 >gi|332286711|ref|YP_004418622.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330430664|gb|AEC21998.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 262 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N + E +S + ++L L AG+VET +G Sbjct: 32 NSRLPTEKFMTEEYGVSRTVVREVLSRLKSAGLVETRQGSG 72 >gi|326331437|ref|ZP_08197727.1| regulatory protein [Nocardioidaceae bacterium Broad-1] gi|325950693|gb|EGD42743.1| regulatory protein [Nocardioidaceae bacterium Broad-1] Length = 246 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 D ++A+ ++ + + L L G+V T RGR GG R DVVK Sbjct: 44 GDRLPSELELAQMLGVATVTAREALVSLRAQGLVVTTRGRGGG-SFVRAPAP---GDVVK 99 >gi|297192919|ref|ZP_06910317.1| ArsR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151557|gb|EFH31235.1| ArsR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 372 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 M + + S++A++ IS + + L L KA +V T R RG L Sbjct: 301 MRLSRNLGRAAYTTSELADSLGISAPEVSRHLAVLKKAKLVSTRR--RGRYVL 351 >gi|291449255|ref|ZP_06588645.1| ArsR2 [Streptomyces roseosporus NRRL 15998] gi|291352202|gb|EFE79106.1| ArsR2 [Streptomyces roseosporus NRRL 15998] Length = 118 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I + +S+ + L+ L +AG++ + R Sbjct: 42 LRLFSKVASHPGGEACVCDI-QDVGVSQPTVSHHLKKLREAGLLTSQR 88 >gi|226954357|ref|ZP_03824821.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226834893|gb|EEH67276.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 477 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 I ++ +AE I++ L K L L AG +E V G RG Sbjct: 422 IQHNPKVSYRSLAEQLGINQSALQKHLNHLKDAGWLERVGGTRG 465 >gi|221196257|ref|ZP_03569304.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD2M] gi|221202930|ref|ZP_03575949.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD2] gi|221176864|gb|EEE09292.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD2] gi|221182811|gb|EEE15211.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD2M] Length = 224 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR 58 +A S L ++L L + G+V VR Sbjct: 38 DLAAEYGTSRNSLREVLHQLGREGLVTFVR 67 >gi|218677444|ref|ZP_03525341.1| GntR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 149 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 +A S + + K+L L KAG++E R ++ G + +P Q +L++ Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84 >gi|218533233|ref|YP_002424049.1| Crp/Fnr family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525536|gb|ACK86121.1| transcriptional regulator, Crp/Fnr family [Methylobacterium chloromethanicum CM4] Length = 299 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 19/32 (59%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P + +A+ +S + + ++LQ L + G++E Sbjct: 226 PITQADLADTLGMSCVHINRVLQKLRRDGLIE 257 >gi|222479504|ref|YP_002565741.1| transcriptional regulator, TrmB [Halorubrum lacusprofundi ATCC 49239] gi|222452406|gb|ACM56671.1| transcriptional regulator, TrmB [Halorubrum lacusprofundi ATCC 49239] Length = 281 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 14/77 (18%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI--------- 73 +AEA I + ++ +L L + G V+ + GR + +I Sbjct: 29 GRTTAPDLAEATGIPKARIYGVLDSLSEGGYVKIIPGRPKRYQ-PHDPSEIAERAVANRR 87 Query: 74 ----TILDVVKATEESF 86 + V+A EESF Sbjct: 88 HAYERFREDVEAVEESF 104 >gi|116249023|ref|YP_764864.1| ROK family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253673|emb|CAK12066.1| putative ROK family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 426 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R ++ IH P ++IA ++ + +I+ L+ G++ R R G Sbjct: 40 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG 90 >gi|115351135|ref|YP_772974.1| IclR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281123|gb|ABI86640.1| transcriptional regulator, IclR family [Burkholderia ambifaria AMMD] Length = 274 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|329945152|ref|ZP_08293020.1| putative acetate operon repressor [Actinomyces sp. oral taxon 170 str. F0386] gi|328529351|gb|EGF56266.1| putative acetate operon repressor [Actinomyces sp. oral taxon 170 str. F0386] Length = 278 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRG 59 + D + VL A + + ++ +A+ + + +IL+ L G V +T RG Sbjct: 35 QSVDRALVVLEELA-KDGTSSSLALLAQRTGLPGPTVHRILRTLASRGYVIKTARG 89 >gi|326800800|ref|YP_004318619.1| DeoR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551564|gb|ADZ79949.1| transcriptional regulator, DeoR family [Sphingobacterium sp. 21] Length = 249 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 23/41 (56%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 I N ++ +++E +SE + + ++ L GIV+ VRG Sbjct: 14 IKNKQSAQLKELSELLNVSEDTVRRDIKELSDLGIVKAVRG 54 >gi|298290983|ref|YP_003692922.1| ArsR family transcriptional regulator [Starkeya novella DSM 506] gi|296927494|gb|ADH88303.1| transcriptional regulator, ArsR family [Starkeya novella DSM 506] Length = 118 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 R+L+ CA+ D + + ++ + I + L + L L AG++ + G++ RL P Sbjct: 33 RLLVACALV-DGEHSVRELEDMLGIRQPGLSQQLAGLRAAGLIIGRKEGKQVFYRLADP 90 >gi|261825953|gb|ACX94481.1| YcxD [Bacillus subtilis] Length = 444 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 D I Q++ IS+ + + LQ L K ++ +V + G + + Sbjct: 21 QEGDRLPSIRQLSARYQISKSTVIRALQELEKRHLIYSV--PKSGYYIVKK 69 >gi|302560143|ref|ZP_07312485.1| MarR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302477761|gb|EFL40854.1| MarR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 173 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 YG+ L+ A D R++++A + I+ L + L K+G V Sbjct: 55 YGL--LVKLAEAPDNRLRMTELAMSAKITRSRLSHAVARLEKSGWVR 99 >gi|256394427|ref|YP_003115991.1| hypothetical protein Caci_5291 [Catenulispora acidiphila DSM 44928] gi|256360653|gb|ACU74150.1| hypothetical protein Caci_5291 [Catenulispora acidiphila DSM 44928] Length = 126 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ A + RI +++ A I+E I+ LVKAG V R Sbjct: 36 HVLVEIARNPQA--RIRELSVAAGITERATAAIISDLVKAGYVARSR 80 >gi|305681465|ref|ZP_07404272.1| transcriptional regulator, ArsR family [Corynebacterium matruchotii ATCC 14266] gi|305659670|gb|EFM49170.1| transcriptional regulator, ArsR family [Corynebacterium matruchotii ATCC 14266] Length = 142 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72 +++ D+ ++ E S+ + + L+ L KA IVE R GR RL PA Sbjct: 54 IIHLLAQRDHFV--YELVETLGSSQPLISQHLRILRKANIVEHHRSGRLITYRLRCPAA- 110 Query: 73 ITILDVVKATEESFFVAECFASHKID 98 LD+++ C++ D Sbjct: 111 ---LDIIE-----LAATTCYSDRHHD 128 >gi|253581224|ref|ZP_04858481.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251847501|gb|EES75474.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 255 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 + Y +H P + + AEA IS +L ++ + Sbjct: 153 AVKYIHLHLHVPVTLEETAEAAGISASYLSRLFKK 187 >gi|284033070|ref|YP_003383001.1| ArsR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283812363|gb|ADB34202.1| transcriptional regulator, ArsR family [Kribbella flavida DSM 17836] Length = 119 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ A +Y +A+ +S + L L AGI+ R Sbjct: 31 LVSLAAQGEYDVGT--LADRAGVSIATASQHLGKLRLAGIITARR 73 >gi|218264662|ref|ZP_03478425.1| hypothetical protein PRABACTJOHN_04131 [Parabacteroides johnsonii DSM 18315] gi|218221849|gb|EEC94499.1| hypothetical protein PRABACTJOHN_04131 [Parabacteroides johnsonii DSM 18315] Length = 248 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +L A D +S+IA ++ IL+ LV VE G + G +L Sbjct: 8 ALNILEILAQEPDKEFGLSEIATTVELNAGTCANILKTLVYRNYVE-QSGTKKGYKLG 64 >gi|163734054|ref|ZP_02141495.1| transcriptional regulator, GntR family, putative [Roseobacter litoralis Och 149] gi|161392590|gb|EDQ16918.1| transcriptional regulator, GntR family, putative [Roseobacter litoralis Och 149] Length = 252 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 +IA +S + + K +Q L +AG++ +G G + +QI Sbjct: 47 REIAAITDLSRVTVRKAIQSLAEAGVIVQKQGS--GSFIASKPEQI 90 >gi|163797383|ref|ZP_02191335.1| putative GntR family transcriptional regulator [alpha proteobacterium BAL199] gi|159177302|gb|EDP61859.1| putative GntR family transcriptional regulator [alpha proteobacterium BAL199] Length = 272 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 10 GIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 GIR L++ A +AE +S + L L + G++E + GG R Sbjct: 22 GIRDLVFSAAFAPGERLSEPVLAERLGLSRTPIRAALARLEQEGLLEII--PSGGYTTRR 79 Query: 69 PADQITILDVVKATE 83 +V+ A E Sbjct: 80 FPAS----EVMDAIE 90 >gi|86741407|ref|YP_481807.1| ArsR family transcriptional regulator [Frankia sp. CcI3] gi|86568269|gb|ABD12078.1| transcriptional regulator, ArsR family [Frankia sp. CcI3] Length = 111 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 10/94 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 IR + A+ D P + +AEA IS L L L G+V V GRR L Sbjct: 22 IRARLLLALR-DSPAHPADLAEAMGISRSRLSNHLACLRGCGLVVAVPVGRRTRYELA-- 78 Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVG 103 + +A +E CP Sbjct: 79 --DARLG---RAIDELRAAV-IALRQDTGCPDAA 106 >gi|86137241|ref|ZP_01055819.1| pyruvate dehydrogenase complex repressor [Roseobacter sp. MED193] gi|85826565|gb|EAQ46762.1| pyruvate dehydrogenase complex repressor [Roseobacter sp. MED193] Length = 284 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 11/59 (18%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 + ++AE +S L + L + G++ G I + DV+ Sbjct: 59 GERLPSERELAERLGVSRPSLRDAIAELQEGGLLTAKAGSG-----------IFVADVL 106 >gi|330466614|ref|YP_004404357.1| regulatory protein marr [Verrucosispora maris AB-18-032] gi|328809585|gb|AEB43757.1| regulatory protein marr [Verrucosispora maris AB-18-032] Length = 154 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +L+ + + R+S++A+A S L + L AG V Sbjct: 48 ILVRLSEAPERRLRMSELADATGSSRSRLSHAVTRLEAAGWVR 90 >gi|322383894|ref|ZP_08057634.1| hypothetical protein PL1_3434 [Paenibacillus larvae subsp. larvae B-3650] gi|321151609|gb|EFX44689.1| hypothetical protein PL1_3434 [Paenibacillus larvae subsp. larvae B-3650] Length = 437 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRLCR 68 +L Y ++ + +IA+ +SE ++ ++ G+V T G +L + Sbjct: 7 ILRYIESLKLGTKISVRKIADQLEVSEGTAYRAIKEAENLGLVSTKERVGTVRVGKKLRQ 66 Query: 69 PADQITILDVVKATEESF 86 D++T +VV + Sbjct: 67 NIDKLTFGEVVNIVDGEV 84 >gi|319647138|ref|ZP_08001363.1| hypothetical protein HMPREF1012_02402 [Bacillus sp. BT1B_CT2] gi|317390785|gb|EFV71587.1| hypothetical protein HMPREF1012_02402 [Bacillus sp. BT1B_CT2] Length = 315 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 ++ ++ + ++A +S+ + + LQ L + G+ + + G GG + Sbjct: 10 MIMM-VNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQ 61 >gi|307325332|ref|ZP_07604535.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] gi|306889136|gb|EFN20119.1| transcriptional regulator, IclR family [Streptomyces violaceusniger Tu 4113] Length = 267 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56 + +L A + P R+ ++AE + ++ +L+ L+ G V T Sbjct: 20 VELLELLAARGEQPARLRELAEELRVPRSSMYALLKTLIDRGWVRT 65 >gi|300788878|ref|YP_003769169.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798392|gb|ADJ48767.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 P +A+ +S + + + L ++G + GR GG L + Sbjct: 23 RPRSARWLADRFEVSVRTVERDISALQQSGTPIYAEAGRTGGYCLDKA 70 >gi|288931328|ref|YP_003435388.1| iron (metal) dependent repressor, DtxR family [Ferroglobus placidus DSM 10642] gi|288893576|gb|ADC65113.1| iron (metal) dependent repressor, DtxR family [Ferroglobus placidus DSM 10642] Length = 192 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +Y ++++ + R +IA+ + + ++L L K G V+ GV L Sbjct: 6 EY-LKIIYDIQRSKNRLVRTGEIAKKLKVKPASVTEMLAKLQKEGYVDYQ--PYKGVTLT 62 Query: 68 RPADQI 73 + ++I Sbjct: 63 KKGEEI 68 >gi|302545649|ref|ZP_07297991.1| AsnC family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463267|gb|EFL26360.1| AsnC family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 116 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 RVL A +++ RI IA C ++E + KI+ L + G + +R Sbjct: 19 RVLAAIADNHNA--RIRDIAAHCRLTERAVQKIISDLERDGYLSHIR 63 >gi|237798194|ref|ZP_04586655.1| transcriptional regulator GntR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021046|gb|EGI01103.1| transcriptional regulator GntR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 249 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R+L+ + + +AE+ IS L + + L + G++ GV + +P Sbjct: 50 RMLVEGELVPGQRLSEATLAESLQISRNTLREAFRILTREGLLTHE--PNRGVTVAKP-- 105 Query: 72 QI-TILDVVKA 81 I +I+D+ + Sbjct: 106 DIASIIDIYRI 116 >gi|269124078|ref|YP_003306655.1| transcriptional regulator, GntR family [Streptobacillus moniliformis DSM 12112] gi|268315404|gb|ACZ01778.1| transcriptional regulator, GntR family [Streptobacillus moniliformis DSM 12112] Length = 240 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 17/43 (39%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D +++ +S + L L K G + V+G+ Sbjct: 25 MPGDRLESERSLSQRYGVSRNTIRSTLNLLEKDGYIFKVQGKG 67 >gi|219848069|ref|YP_002462502.1| IclR family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542328|gb|ACL24066.1| transcriptional regulator, IclR family [Chloroflexus aggregans DSM 9485] Length = 256 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66 VL A +D +S+++E + + ++L L G V + R G RL Sbjct: 10 AFDVLEALAQADDD-LSVSELSEQLDLPLATVHRLLSSLAARGYVTQEPSTRRYGPGPRL 68 Query: 67 ----CRPADQITILDVVKA 81 R A D+++ Sbjct: 69 LEIAARAAQSRRF-DLIRI 86 >gi|33596207|ref|NP_883850.1| transcriptional regulator [Bordetella parapertussis 12822] gi|33601618|ref|NP_889178.1| transcriptional regulator [Bordetella bronchiseptica RB50] gi|33573210|emb|CAE36865.1| probable transcriptional regulator [Bordetella parapertussis] gi|33576055|emb|CAE33134.1| probable transcriptional regulator [Bordetella bronchiseptica RB50] Length = 245 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 RVL A + P ++ +AE +++ L++ + L + G V G Sbjct: 12 RVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGA 62 >gi|28895234|ref|NP_801584.1| transcriptional repressor CodY [Streptococcus pyogenes SSI-1] gi|28810480|dbj|BAC63417.1| putative transcriptional pleiotropic repressor [Streptococcus pyogenes SSI-1] Length = 260 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|325294110|ref|YP_004279974.1| GntR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325061963|gb|ADY65654.1| transcriptional regulator, GntR family [Agrobacterium sp. H13-3] Length = 238 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +A+ +S + + + L G VET +G Sbjct: 34 GDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGVG 74 >gi|311898319|dbj|BAJ30727.1| putative GntR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 115 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++AEA ++ + + L+ L G++E RGR Sbjct: 31 RPGDRLPSAKELAEALDVNVNTVLRGLRDLRDDGLLEFRRGRG 73 >gi|302672168|ref|YP_003832128.1| GntR family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396641|gb|ADL35546.1| transcriptional regulator GntR family [Butyrivibrio proteoclasticus B316] Length = 363 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + ++ + +S + +Q L + G++E+ RG Sbjct: 23 SLKSGEKIPSENELCDMFGLSRQTIRHAIQKLSEEGLLESRRGSG 67 >gi|111019365|ref|YP_702337.1| IclR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110818895|gb|ABG94179.1| transcriptional regulator, IclR family protein [Rhodococcus jostii RHA1] gi|194277410|gb|ACF39363.1| transcriptional regulator [Rhodococcus sp. DK17] Length = 256 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + A PN ++++A +S + +IL L K G V G G L + Sbjct: 18 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 72 Query: 74 TILD 77 +I Sbjct: 73 SIGQ 76 >gi|94994537|ref|YP_602635.1| GntR family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548045|gb|ABF38091.1| Transcriptional regulator, GntR family [Streptococcus pyogenes MGAS10750] Length = 153 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98 >gi|71903628|ref|YP_280431.1| GntR family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94990614|ref|YP_598714.1| GntR family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|71802723|gb|AAX72076.1| transcriptional regulator, GntR family [Streptococcus pyogenes MGAS6180] gi|94544122|gb|ABF34170.1| Transcriptional regulator, GntR family [Streptococcus pyogenes MGAS10270] Length = 153 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98 >gi|14590082|ref|NP_142146.1| transcriptional regulator [Pyrococcus horikoshii OT3] gi|18202075|sp|O57880|REG3_PYRHO RecName: Full=Uncharacterized HTH-type transcriptional regulator PH0140 gi|3256526|dbj|BAA29209.1| 158aa long hypothetical transcriptional regulator [Pyrococcus horikoshii OT3] Length = 158 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R ++ + D S+I+ + E + + LVK G++ Sbjct: 17 RAILRL-LQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIR 59 >gi|329116322|ref|ZP_08245039.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus parauberis NCFD 2020] gi|326906727|gb|EGE53641.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus parauberis NCFD 2020] Length = 260 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|312878958|ref|ZP_07738758.1| transcriptional regulator, GntR family [Aminomonas paucivorans DSM 12260] gi|310782249|gb|EFQ22647.1| transcriptional regulator, GntR family [Aminomonas paucivorans DSM 12260] Length = 221 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +H P +++A+ IS + + L+ L + G V++V G+ Sbjct: 27 LHEGEPLSENRLAQELAISRTPIREALRNLEQDGFVKSVPGKG 69 >gi|301301095|ref|ZP_07207254.1| transcriptional regulator, ArsR family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851307|gb|EFK79032.1| transcriptional regulator, ArsR family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 104 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGV 64 T Y I L+Y + +S+I +S+ + L+ L + G+V R G+R Sbjct: 27 YTRYKILYLLY-----ERELSVSEITSEIGVSQSAISHQLKLLRQTGLVSGRRDGQRILY 81 Query: 65 RLC 67 L Sbjct: 82 SLA 84 >gi|296533120|ref|ZP_06895753.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296266548|gb|EFH12540.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 103 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67 R+L+ CA+ + ++ I + L + L L AG+V T R G+ RL Sbjct: 25 RLLIACALVEGER-SVGELEAMLGIRQPGLSQQLAGLRAAGLVATRRSGKAVFYRLA 80 >gi|239934253|ref|ZP_04691206.1| putative arsenic resistance operon repressor ArsR [Streptomyces ghanaensis ATCC 14672] Length = 118 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A H + + +S+ + L+ L +AG+V + R Sbjct: 39 LRLLSLIASHAGGEACVCDLIGPFDVSQPTISHHLKVLREAGLVGSER 86 >gi|227504033|ref|ZP_03934082.1| ArsR family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227199363|gb|EEI79411.1| ArsR family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 108 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 23/48 (47%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +L A P ++ + ++ +S+ + L+ L +AG++ R Sbjct: 37 LSLLSQLATEGCGPVSVNDLTKSSGLSQPTVSHHLKKLTEAGLLTKER 84 >gi|227495824|ref|ZP_03926135.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434] gi|226834646|gb|EEH67029.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434] Length = 385 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 23/46 (50%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + ++ + P +++A + +S L + + L +AG+V+ R Sbjct: 14 AAVLLSLASRGPASRTELAASLGLSAATLTRATRALAEAGLVDESR 59 >gi|261380384|ref|ZP_05984957.1| transcriptional regulator, ArsR family [Neisseria subflava NJ9703] gi|284796909|gb|EFC52256.1| transcriptional regulator, ArsR family [Neisseria subflava NJ9703] Length = 100 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 22/41 (53%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L ++ P+ ++++AE+ + + + L L +AG+V Sbjct: 26 LAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66 >gi|297200627|ref|ZP_06918024.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197709758|gb|EDY53792.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 289 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A +S + ++L L G +E+ +GR Sbjct: 40 RELAAKYQVSRDTVQRVLGVLADEGWIESRQGRG 73 >gi|170089355|ref|XP_001875900.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649160|gb|EDR13402.1| predicted protein [Laccaria bicolor S238N-H82] Length = 763 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 22/40 (55%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 + + + +S+++ A I + +L ++L LVKA I+ Sbjct: 601 VLLQYNKNDTLSLSELSAATSIPKDYLGQVLAILVKAKIL 640 >gi|161617806|ref|YP_001591771.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161367170|gb|ABX70938.1| hypothetical protein SPAB_05670 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|321222522|gb|EFX47594.1| Uxu operon transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 241 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +IAE ++ + + L L G+VE RG Sbjct: 12 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG 54 >gi|148984939|ref|ZP_01818192.1| transcriptional repressor CodY [Streptococcus pneumoniae SP3-BS71] gi|148988637|ref|ZP_01820070.1| transcriptional repressor CodY [Streptococcus pneumoniae SP6-BS73] gi|148993391|ref|ZP_01822908.1| transcriptional repressor CodY [Streptococcus pneumoniae SP9-BS68] gi|148997349|ref|ZP_01824954.1| transcriptional repressor CodY [Streptococcus pneumoniae SP11-BS70] gi|149003179|ref|ZP_01828075.1| transcriptional repressor CodY [Streptococcus pneumoniae SP14-BS69] gi|149007500|ref|ZP_01831135.1| transcriptional repressor CodY [Streptococcus pneumoniae SP18-BS74] gi|149012682|ref|ZP_01833658.1| transcriptional repressor CodY [Streptococcus pneumoniae SP19-BS75] gi|149022053|ref|ZP_01836015.1| transcriptional repressor CodY [Streptococcus pneumoniae SP23-BS72] gi|168483539|ref|ZP_02708491.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC1873-00] gi|168486851|ref|ZP_02711359.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC1087-00] gi|168488694|ref|ZP_02712893.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae SP195] gi|168491524|ref|ZP_02715667.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC0288-04] gi|168493487|ref|ZP_02717630.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC3059-06] gi|168575218|ref|ZP_02721181.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae MLV-016] gi|169832460|ref|YP_001694987.1| transcriptional repressor CodY [Streptococcus pneumoniae Hungary19A-6] gi|182684537|ref|YP_001836284.1| transcriptional repressor CodY [Streptococcus pneumoniae CGSP14] gi|221232343|ref|YP_002511496.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus pneumoniae ATCC 700669] gi|225855025|ref|YP_002736537.1| transcriptional repressor CodY [Streptococcus pneumoniae JJA] gi|225857208|ref|YP_002738719.1| transcriptional repressor CodY [Streptococcus pneumoniae P1031] gi|225859339|ref|YP_002740849.1| transcriptional repressor CodY [Streptococcus pneumoniae 70585] gi|225861415|ref|YP_002742924.1| transcriptional repressor CodY [Streptococcus pneumoniae Taiwan19F-14] gi|237650265|ref|ZP_04524517.1| transcriptional repressor CodY [Streptococcus pneumoniae CCRI 1974] gi|237820851|ref|ZP_04596696.1| transcriptional repressor CodY [Streptococcus pneumoniae CCRI 1974M2] gi|298230289|ref|ZP_06963970.1| transcriptional repressor CodY [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255230|ref|ZP_06978816.1| transcriptional repressor CodY [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503321|ref|YP_003725261.1| CodY family transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|307068225|ref|YP_003877191.1| pleiotropic transcriptional repressor [Streptococcus pneumoniae AP200] gi|307127793|ref|YP_003879824.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae 670-6B] gi|226709189|sp|B1ID02|CODY_STRPI RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|226709190|sp|B2IRA0|CODY_STRPS RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|254765872|sp|C1C8H3|CODY_STRP7 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|254765873|sp|B8ZLU4|CODY_STRPJ RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|254765875|sp|C1CFG6|CODY_STRZJ RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|254765876|sp|C1CLT1|CODY_STRZP RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|254765877|sp|C1CSK2|CODY_STRZT RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|147756404|gb|EDK63445.1| transcriptional repressor CodY [Streptococcus pneumoniae SP11-BS70] gi|147758639|gb|EDK65636.1| transcriptional repressor CodY [Streptococcus pneumoniae SP14-BS69] gi|147760859|gb|EDK67829.1| transcriptional repressor CodY [Streptococcus pneumoniae SP18-BS74] gi|147763282|gb|EDK70220.1| transcriptional repressor CodY [Streptococcus pneumoniae SP19-BS75] gi|147922961|gb|EDK74077.1| transcriptional repressor CodY [Streptococcus pneumoniae SP3-BS71] gi|147925838|gb|EDK76913.1| transcriptional repressor CodY [Streptococcus pneumoniae SP6-BS73] gi|147927946|gb|EDK78966.1| transcriptional repressor CodY [Streptococcus pneumoniae SP9-BS68] gi|147929897|gb|EDK80886.1| transcriptional repressor CodY [Streptococcus pneumoniae SP23-BS72] gi|168994962|gb|ACA35574.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae Hungary19A-6] gi|172043154|gb|EDT51200.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC1873-00] gi|182629871|gb|ACB90819.1| transcriptional repressor CodY [Streptococcus pneumoniae CGSP14] gi|183570227|gb|EDT90755.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC1087-00] gi|183572688|gb|EDT93216.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae SP195] gi|183574186|gb|EDT94714.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC0288-04] gi|183576471|gb|EDT96999.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae CDC3059-06] gi|183578882|gb|EDT99410.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae MLV-016] gi|220674804|emb|CAR69377.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus pneumoniae ATCC 700669] gi|225722103|gb|ACO17957.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae 70585] gi|225722189|gb|ACO18042.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae JJA] gi|225725624|gb|ACO21476.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae P1031] gi|225727784|gb|ACO23635.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae Taiwan19F-14] gi|298238916|gb|ADI70047.1| CodY family transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|301794591|emb|CBW37035.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus pneumoniae INV104] gi|301800412|emb|CBW33044.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus pneumoniae OXC141] gi|306409762|gb|ADM85189.1| Pleiotropic transcriptional repressor [Streptococcus pneumoniae AP200] gi|306484855|gb|ADM91724.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae 670-6B] gi|327389769|gb|EGE88114.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae GA04375] gi|332072429|gb|EGI82912.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae GA17570] gi|332072753|gb|EGI83234.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae GA17545] gi|332073918|gb|EGI84396.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae GA41301] gi|332199625|gb|EGJ13700.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae GA41317] gi|332200145|gb|EGJ14218.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae GA47368] gi|332201023|gb|EGJ15094.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae GA47901] Length = 262 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79 N+ S IA+ I+ + L+ L AGI+E+ G +G ++ I D+ Sbjct: 201 NEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLISDIF 254 Query: 80 KAT 82 + Sbjct: 255 EEV 257 >gi|116669401|ref|YP_830334.1| GntR family transcriptional regulator [Arthrobacter sp. FB24] gi|116609510|gb|ABK02234.1| transcriptional regulator, GntR family [Arthrobacter sp. FB24] Length = 246 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A +S + K + LV++G++ RG Sbjct: 45 DLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 77 >gi|332670723|ref|YP_004453731.1| MarR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339761|gb|AEE46344.1| transcriptional regulator, MarR family [Cellulomonas fimi ATCC 484] Length = 176 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL++ A P ++A AC ++E + ++L + + G VE Sbjct: 63 VLVHLARA---PYSQRELAGACGVTEQTMSRVLARMERTGYVE 102 >gi|300787709|ref|YP_003768000.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797223|gb|ADJ47598.1| GntR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 131 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M L + +RV +D ++ +AEA I+ + K + LV G+ E G Sbjct: 16 MQLVVQVKQALRV--GLLRPDDQLPKVRDVAEALAINPNTVLKAYRELVLEGLAEGRPGV 73 Query: 61 R 61 Sbjct: 74 G 74 >gi|296269057|ref|YP_003651689.1| GntR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091844|gb|ADG87796.1| transcriptional regulator, GntR family with aminotransferase domain [Thermobispora bispora DSM 43833] Length = 479 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 16/44 (36%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D +I +S + + + + L G+V + G Sbjct: 21 SRPGDRLPSSREIMRRHGVSPITVSRAIARLAAEGLVISKPGSG 64 >gi|257462643|ref|ZP_05627053.1| aminotransferase class-I [Fusobacterium sp. D12] gi|317060290|ref|ZP_07924775.1| transcriptional regulator [Fusobacterium sp. D12] gi|313685966|gb|EFS22801.1| transcriptional regulator [Fusobacterium sp. D12] Length = 478 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR----GGVRL 66 I Q++ ++ + K+ Q L + G + +++G+ G L Sbjct: 38 SIRQVSIKFEVNLNTVLKVFQTLEEEGYLYSIKGKGCFIKKGYHL 82 >gi|241760154|ref|ZP_04758252.1| regulatory protein ArsR [Neisseria flavescens SK114] gi|241319608|gb|EER56038.1| regulatory protein ArsR [Neisseria flavescens SK114] Length = 100 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 22/41 (53%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L ++ P+ ++++AE+ + + + L L +AG+V Sbjct: 26 LAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66 >gi|255942771|ref|XP_002562154.1| Pc18g03140 [Penicillium chrysogenum Wisconsin 54-1255] gi|211586887|emb|CAP94538.1| Pc18g03140 [Penicillium chrysogenum Wisconsin 54-1255] Length = 388 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 11 IRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+ + +D +++IAE S FL +IL+ L I++ Sbjct: 54 LRISADLGLFRSLAESDASLTVTKIAELTRASPQFLERILRYLAATHIIK 103 >gi|254440608|ref|ZP_05054102.1| putative transcriptional regulator family [Octadecabacter antarcticus 307] gi|198256054|gb|EDY80368.1| putative transcriptional regulator family [Octadecabacter antarcticus 307] Length = 217 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Query: 37 SELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQIT 74 S L K L L AG++ +++G G RL + +++ Sbjct: 36 SPTLLSKRLSELEAAGVIVSIKGTSGSKEYRLTKAGEELR 75 >gi|197363683|ref|YP_002143320.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095160|emb|CAR60709.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|301159361|emb|CBW18879.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 79 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ C + ++A +S + L + + G++++ R Sbjct: 6 RLLILCMLCGSPKTSAGELARITGLSPSATSQHLARMREEGLIDSQR 52 >gi|254426949|ref|ZP_05040656.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193118|gb|EDX88077.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 220 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 14 LMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVK---AGIVETVRGRRGGVR 65 L+ Q+A+ + L + L + +GIVETVRG GG R Sbjct: 158 LLALLQSRGRLLTPDQLADRVYGWVDGVESNALAVHIHNLRRKLGSGIVETVRG--GGYR 215 Query: 66 LCRP 69 L P Sbjct: 216 LGAP 219 >gi|188535517|ref|YP_001909314.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188030559|emb|CAO98454.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 306 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 14/31 (45%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQP 47 A H + P + +IA +S L ++ + Sbjct: 224 MAQHPEQPWSLEEIASCAHVSARHLTRLFRQ 254 >gi|184199676|ref|YP_001853883.1| MarR family transcriptional regulator [Kocuria rhizophila DC2201] gi|183579906|dbj|BAG28377.1| putative MarR family transcriptional regulator [Kocuria rhizophila DC2201] Length = 161 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 VL + ++ +++S +A A S+ L +I+ + + G+V T GR+ Sbjct: 46 VLAMLSEAPNHRHKMSALATATNTSQSRLSRIVARMERDGLV-TREGRQ 93 >gi|170694906|ref|ZP_02886056.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] gi|170140266|gb|EDT08444.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] Length = 228 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%) Query: 6 RTDYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + DY R L A+ Q+A + + + L L + G VET RR Sbjct: 19 KVDYAYRRLEEMIVTRALPPGALVSEVQLANEINVGRTPVREALARLKQFGFVETHP-RR 77 Query: 62 GGVRLCRPAD-QITILDVVKATEESFFVAEC 91 G Q+ +L+V +A E A C Sbjct: 78 GTFVSTVDVRKQLELLEVRRALEPLVVAAAC 108 >gi|126740162|ref|ZP_01755851.1| transcriptional regulator, GntR family protein [Roseobacter sp. SK209-2-6] gi|126718617|gb|EBA15330.1| transcriptional regulator, GntR family protein [Roseobacter sp. SK209-2-6] Length = 477 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------P 69 A + P A +S + + LV G +++ G G RLC P Sbjct: 35 DLAAGSLLP-PTRVFATELGVSRSTVVTAYEQLVAEGYLQSQPGS--GYRLCPVGEVELP 91 Query: 70 ADQITILDVVKATEESFFVAECFASHKID 98 ++ +T+ V A EE CF + + D Sbjct: 92 SEAMTLQSV--APEEKSRQVACFEAGQPD 118 >gi|27468803|ref|NP_765440.1| hypothetical protein SE1885 [Staphylococcus epidermidis ATCC 12228] gi|57867764|ref|YP_189456.1| DeoR family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251811986|ref|ZP_04826459.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875279|ref|ZP_06284152.1| transcriptional regulator, DeoR family [Staphylococcus epidermidis SK135] gi|293368370|ref|ZP_06614996.1| DeoR family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27316351|gb|AAO05526.1|AE016750_131 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57638422|gb|AAW55210.1| transcriptional regulator, DeoR family [Staphylococcus epidermidis RP62A] gi|251804495|gb|EES57152.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296044|gb|EFA88565.1| transcriptional regulator, DeoR family [Staphylococcus epidermidis SK135] gi|291317502|gb|EFE57922.1| DeoR family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329726530|gb|EGG62993.1| HTH domain protein [Staphylococcus epidermidis VCU144] gi|329733896|gb|EGG70220.1| HTH domain protein [Staphylococcus epidermidis VCU028] gi|329738023|gb|EGG74245.1| HTH domain protein [Staphylococcus epidermidis VCU045] Length = 229 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75 I + SQ+A+ +S+ + + + L G+ V G+ GG ++ +IT+ Sbjct: 14 IQSSDKITASQLAKQFNVSKRTILRDIDELEDQGVKVYARHGKLGGYQIKDAHAKITL 71 >gi|33603090|ref|NP_890650.1| transcriptional regulator [Bordetella bronchiseptica RB50] gi|33568721|emb|CAE34479.1| probable transcriptional regulator [Bordetella bronchiseptica RB50] Length = 271 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 10 GIRVLMYC-AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R L A H P + +IAEA + +IL L G VE G RG Sbjct: 29 AARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRG 83 >gi|14590621|ref|NP_142689.1| hypothetical protein PH0751 [Pyrococcus horikoshii OT3] gi|3257159|dbj|BAA29842.1| 357aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 357 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 +Y AI + + E + + L+ I+Q L++ G + GR Sbjct: 23 VYLAILMKNGATVKDLLETLDVHQPQLYNIIQSLIRKGFIRASAGR 68 >gi|116668599|ref|YP_829532.1| GntR family transcriptional regulator [Arthrobacter sp. FB24] gi|116608708|gb|ABK01432.1| transcriptional regulator, GntR family [Arthrobacter sp. FB24] Length = 230 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 D + + +S + L L G+VET RGR G L P Sbjct: 23 QPGDKLPSENTLIGEFGVSRTVVRAALTRLQAEGLVETERGR-GSFALTPPP 73 >gi|319794247|ref|YP_004155887.1| IclR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596710|gb|ADU37776.1| transcriptional regulator, IclR family [Variovorax paradoxus EPS] Length = 279 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 G+RVL + N ++A + +F++L L G +E G R RL Sbjct: 25 GLRVLCEFSREN-RTLSAPELARRFDLPRSTVFRLLTTLENMGFLERAEGGR-DYRLG 80 >gi|315441504|ref|YP_004074381.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1] gi|315265159|gb|ADU01900.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1] Length = 124 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A H + I+ +S+ + L+ L AG++ + R Sbjct: 52 IASHAGGEACVCDISADIEVSQPTISHHLKVLRDAGLLTSQRRAS 96 >gi|307946386|ref|ZP_07661721.1| toxin-antitoxin system, antitoxin component, ArsR family [Roseibium sp. TrichSKD4] gi|307770050|gb|EFO29276.1| toxin-antitoxin system, antitoxin component, ArsR family [Roseibium sp. TrichSKD4] Length = 126 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 +L A ++++AE IS+ + K L+ L K+G++E RG R RPA Sbjct: 28 ILTRLAQ---GEATVNELAEPFQISQPAISKHLKVLEKSGLIE--RGIN---RTKRPAR 78 >gi|300818223|ref|ZP_07098434.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 107-1] gi|300529114|gb|EFK50176.1| bacterial extracellular solute-binding protein, family 5 [Escherichia coli MS 107-1] Length = 566 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80 ++++AE C SE + +L+ +AG +E + RG+RG +R + + + + Sbjct: 24 VTVNELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83 Query: 81 ATE 83 A E Sbjct: 84 ALE 86 >gi|284045861|ref|YP_003396201.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950082|gb|ADB52826.1| GntR domain protein [Conexibacter woesei DSM 14684] Length = 243 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + +D + A +S + L L+ L AG+++ VR GG L A + + DV Sbjct: 37 LPDDQLPPEREFAVQLGVSRMTLRTALRDLEAAGLLKRVRRGSGGGALVINAGTLGVTDV 96 >gi|256783282|ref|ZP_05521713.1| MarR family transcriptional regulator [Streptomyces lividans TK24] Length = 150 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 22/35 (62%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 + + P R++++A A +S+ + +++ L +AG+ Sbjct: 42 LSREGPQRLTELARAEGVSQPNMTQLVTRLERAGL 76 >gi|225869157|ref|YP_002745105.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus equi subsp. zooepidemicus] gi|259586008|sp|C0MEA0|CODY_STRS7 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|225702433|emb|CAX00314.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus equi subsp. zooepidemicus] Length = 260 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|195977530|ref|YP_002122774.1| transcriptional repressor CodY [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226709188|sp|B4U194|CODY_STREM RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|195974235|gb|ACG61761.1| GTP-sensing transcriptional pleiotropic repressor codY [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 260 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|194397588|ref|YP_002038214.1| transcriptional repressor CodY [Streptococcus pneumoniae G54] gi|194357255|gb|ACF55703.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae G54] Length = 262 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79 N+ S IA+ I+ + L+ L AGI+E+ G +G ++ I D+ Sbjct: 201 NEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLISDIF 254 Query: 80 KAT 82 + Sbjct: 255 EEV 257 >gi|161520632|ref|YP_001584059.1| GntR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353182|ref|YP_001948809.1| GntR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344682|gb|ABX17767.1| transcriptional regulator, GntR family [Burkholderia multivorans ATCC 17616] gi|189337204|dbj|BAG46273.1| GntR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 224 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR 58 +A S L ++L L + G+V VR Sbjct: 38 DLAAEYGTSRNSLREVLHQLGREGLVTFVR 67 >gi|114761512|ref|ZP_01441427.1| transcriptional regulator, GntR family protein [Pelagibaca bermudensis HTCC2601] gi|114545760|gb|EAU48762.1| transcriptional regulator, GntR family protein [Roseovarius sp. HTCC2601] Length = 247 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 24/43 (55%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +D + ++ E ++ + + + +Q LV+ G++ + RG+R Sbjct: 31 RQDDPVPTLDELTEEFSLARVTVRQAIQLLVQEGLLSSHRGKR 73 >gi|94992548|ref|YP_600647.1| GntR family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|94546056|gb|ABF36103.1| Transcriptional regulator, GntR family [Streptococcus pyogenes MGAS2096] Length = 153 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98 >gi|2398776|emb|CAA67940.1| putative regulator of catechol degradative operon [Rhodococcus opacus] Length = 256 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + A PN ++++A +S + +IL L K G V G G L + Sbjct: 18 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 72 Query: 74 TILD 77 +I Sbjct: 73 SIGQ 76 >gi|92117769|ref|YP_577498.1| ArsR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91800663|gb|ABE63038.1| transcriptional regulator, ArsR family [Nitrobacter hamburgensis X14] Length = 115 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 16/42 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H IA+A + + + L L +AG+V R Sbjct: 25 LVKHEPKGLAAGDIAKAVAVPQNTMSSHLAVLSRAGLVSAQR 66 >gi|75677301|ref|YP_319722.1| ArsR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74422171|gb|ABA06370.1| transcriptional regulator, ArsR family [Nitrobacter winogradskyi Nb-255] Length = 120 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 11/98 (11%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRR 61 L++ T +R++ I EA S + L L AG+VE+ R Sbjct: 13 LSQETR--LRIVRLLVKAGPEGMSAGAIGEAMDSASSSRMSFHLSHLEHAGLVESRRE-- 68 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99 G + A +T+ +V+ F + +C H C Sbjct: 69 -GRSIIYSAALVTLSSLVE-----FLMRDCCQGHPEVC 100 >gi|52784454|ref|YP_090283.1| hypothetical protein BLi00652 [Bacillus licheniformis ATCC 14580] gi|163119267|ref|YP_077880.2| hypothetical protein BL05058 [Bacillus licheniformis ATCC 14580] gi|52346956|gb|AAU39590.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|145902773|gb|AAU22242.2| hypothetical protein BL05058 [Bacillus licheniformis ATCC 14580] Length = 315 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65 ++ ++ + ++A +S+ + + LQ L + G+ + + G GG + Sbjct: 10 MIMM-VNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQ 61 >gi|33598194|ref|NP_885837.1| transcriptional regulator [Bordetella parapertussis 12822] gi|33566752|emb|CAE38965.1| probable transcriptional regulator [Bordetella parapertussis] Length = 271 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 10 GIRVLMYC-AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R L A H P + +IAEA + +IL L G VE G RG Sbjct: 29 AARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRG 83 >gi|27382195|ref|NP_773724.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|14041196|emb|CAC38738.1| hypothetical protein [Bradyrhizobium japonicum] gi|27355366|dbj|BAC52349.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 236 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 12 RVLMYCAIHNDY----------PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L+ A + P IA+ + + +IL + G+VE+ R R Sbjct: 156 HALLRLAKQSGKKLDHGIEIDFPISRQDIAQMTGTTLHTVSRILSGWEQQGLVESGRQR- 214 Query: 62 GGVRLCRPADQITIL 76 + R +I +L Sbjct: 215 ---IILREPHRIVVL 226 >gi|21225694|ref|NP_631473.1| MarR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289767155|ref|ZP_06526533.1| MarR family transcriptional regulator [Streptomyces lividans TK24] gi|7160158|emb|CAB76343.1| putative MarR-family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289697354|gb|EFD64783.1| MarR family transcriptional regulator [Streptomyces lividans TK24] Length = 155 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 22/35 (62%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 + + P R++++A A +S+ + +++ L +AG+ Sbjct: 47 LSREGPQRLTELARAEGVSQPNMTQLVTRLERAGL 81 >gi|15675618|ref|NP_269792.1| transcriptional repressor CodY [Streptococcus pyogenes M1 GAS] gi|19746726|ref|NP_607862.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS8232] gi|21911080|ref|NP_665348.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS315] gi|71911325|ref|YP_282875.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS5005] gi|139473210|ref|YP_001127925.1| transcriptional repressor CodY [Streptococcus pyogenes str. Manfredo] gi|209559888|ref|YP_002286360.1| transcriptional repressor CodY [Streptococcus pyogenes NZ131] gi|306826767|ref|ZP_07460069.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pyogenes ATCC 10782] gi|61212506|sp|Q5XAC3|CODY_STRP6 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|61221145|sp|P0A349|CODY_STRP1 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|61221146|sp|P0A350|CODY_STRP3 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|61221147|sp|P0A351|CODY_STRP8 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|166218409|sp|A2RCV3|CODY_STRPG RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|226709191|sp|B5XI03|CODY_STRPZ RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|13622826|gb|AAK34513.1| putative transcriptional pleiotropic repressor [Streptococcus pyogenes M1 GAS] gi|19748952|gb|AAL98361.1| putative transcriptional pleiotropic repressor [Streptococcus pyogenes MGAS8232] gi|21905289|gb|AAM80151.1| putative transcriptional pleiotropic repressor [Streptococcus pyogenes MGAS315] gi|71854107|gb|AAZ52130.1| transcription pleiotropic repressor [Streptococcus pyogenes MGAS5005] gi|134271456|emb|CAM29676.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus pyogenes str. Manfredo] gi|209541089|gb|ACI61665.1| GTP-sensing transcriptional pleiotropic repressor codY [Streptococcus pyogenes NZ131] gi|304431056|gb|EFM34063.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pyogenes ATCC 10782] Length = 260 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|328956601|ref|YP_004373987.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Carnobacterium sp. 17-4] gi|328672925|gb|AEB28971.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor [Carnobacterium sp. 17-4] Length = 328 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61 ++ + +R+L +A++ +S ++K ++ L + G +E V Sbjct: 1 MSTK----LRILSLLEQQKGNSISGQSLADSLGLSRTSIWKGIKSLQEEGYIIEAV--TN 54 Query: 62 GGVRLCRPADQIT 74 G RL +D I+ Sbjct: 55 KGYRLSLSSDIIS 67 >gi|329944606|ref|ZP_08292746.1| transcriptional regulator, MarR family [Actinomyces sp. oral taxon 170 str. F0386] gi|328530159|gb|EGF57042.1| transcriptional regulator, MarR family [Actinomyces sp. oral taxon 170 str. F0386] Length = 142 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L+ ++ SQ+A C IS+ + + ++ L +A + GG L Sbjct: 38 ALIMLQRRDEA--TASQLARDCNISQQAMSQTVKRLREAEFITLQPSPHGGRAL 89 >gi|313897820|ref|ZP_07831361.1| transcriptional regulator, LysR family [Clostridium sp. HGF2] gi|312957355|gb|EFR38982.1| transcriptional regulator, LysR family [Clostridium sp. HGF2] Length = 299 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%) Query: 11 IRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQ----PLVKAGIVETVRG---RRG 62 +RVL Y I + IS AE IS+ L + ++ L K V + R + Sbjct: 3 LRVLHYFLTIAREQ--SISGAAEFLHISQPTLSRQMKDMEDELGKQLFVRSNRKITLTQE 60 Query: 63 GVRLCRPADQITILDVVKATEESFFVAE 90 G L + A++I LD+VK TE+ + + Sbjct: 61 GRILRKRAEEI--LDLVKKTEDEITLQD 86 >gi|255263369|ref|ZP_05342711.1| GntR domain protein [Thalassiobium sp. R2A62] gi|255105704|gb|EET48378.1| GntR domain protein [Thalassiobium sp. R2A62] Length = 256 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 19/51 (37%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +L + +++E +S L L L G++++ G Sbjct: 21 LLILRGILRPGERLPSERELSERLGVSRPSLRDALADLSDRGLLDSRAGAG 71 >gi|261822938|ref|YP_003261044.1| transcriptional regulator, IclR family [Pectobacterium wasabiae WPP163] gi|261606951|gb|ACX89437.1| transcriptional regulator, IclR family [Pectobacterium wasabiae WPP163] Length = 252 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + + + +R+L + +I+ I+ + + L +L+ L AG ++ + Sbjct: 1 MPIIQSVERALRIL-DLFDEYNVEIKITDISTQIGLHKSTLHSLLKTLQVAGYIDQNK-E 58 Query: 61 RGGVRLCRP 69 G RL Sbjct: 59 NGKYRLGMK 67 >gi|239627197|ref|ZP_04670228.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517343|gb|EEQ57209.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D +++AE IS L + ++ L+ GI+E RGR Sbjct: 28 GDRLPNETELAEELNISRTTLREAIKILIAYGILEIQRGRG 68 >gi|269128350|ref|YP_003301720.1| ArsR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313308|gb|ACY99682.1| transcriptional regulator, ArsR family [Thermomonospora curvata DSM 43183] Length = 104 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+L A + ++ A ++ + L+ L +AG+V + R Sbjct: 26 LRLLSLIACRKGGEVCVCELTGAFDVTAPTISHHLKVLKQAGLVVSER 73 >gi|225869891|ref|YP_002745838.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus equi subsp. equi 4047] gi|254765871|sp|C0M7E5|CODY_STRE4 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|225699295|emb|CAW92648.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus equi subsp. equi 4047] Length = 260 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|221209886|ref|ZP_03582867.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD1] gi|221170574|gb|EEE03040.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD1] Length = 244 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR 58 +A S L ++L L + G+V VR Sbjct: 58 DLAAEYGTSRNSLREVLHQLGREGLVTFVR 87 >gi|188025596|ref|ZP_02997578.1| hypothetical protein PROSTU_00975 [Providencia stuartii ATCC 25827] gi|188022954|gb|EDU60994.1| hypothetical protein PROSTU_00975 [Providencia stuartii ATCC 25827] Length = 269 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 14/81 (17%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----C 67 ++ + D + + E S+ + + L+ L G+++T G GG + Sbjct: 41 IMADNLMPGDRLPQEKDLIERYSASKSTVREALKSLEVQGLIKTKTGPGGGAFIDSMTEA 100 Query: 68 RPA---------DQITILDVV 79 R I+I D+ Sbjct: 101 RAMSLLSNYLFTRDISIKDIY 121 >gi|149180552|ref|ZP_01859056.1| transcriptional regulator (GntR family) protein [Bacillus sp. SG-1] gi|148851705|gb|EDL65851.1| transcriptional regulator (GntR family) protein [Bacillus sp. SG-1] Length = 132 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ + +A I+ + K + L G + +V+GR Sbjct: 32 DEQLPSVRTLAGELTINPNTIQKAYRELENQGYIYSVKGRG 72 >gi|118590840|ref|ZP_01548240.1| putative transcriptional regulator, ArsR family protein [Stappia aggregata IAM 12614] gi|118436362|gb|EAV43003.1| putative transcriptional regulator, ArsR family protein [Stappia aggregata IAM 12614] Length = 111 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60 L+ T R ++ A D +S++AE +S + K L+ L AG+V+ RGR Sbjct: 16 LSDGTR---RAIV--ARLADGETSLSELAEPFDMSLTAVSKHLRVLSNAGLVDIEKRGR 69 >gi|116695409|ref|YP_840985.1| transcriptional regulator [Ralstonia eutropha H16] gi|113529908|emb|CAJ96255.1| predicted transcriptional regulator [Ralstonia eutropha H16] Length = 88 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI 53 P +++IA+ + L ++L L AG+ Sbjct: 25 GGSPWSLAKIAKRAQLPMSVLRRVLTQLQAAGL 57 >gi|110635178|ref|YP_675386.1| MarR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286162|gb|ABG64221.1| transcriptional regulator, MarR family [Chelativorans sp. BNC1] Length = 166 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + A+H + SQ+AE + + K + L G VE Sbjct: 48 IMLALHLENGLTPSQLAERLGVRPPTITKTINRLAAQGFVE 88 >gi|50914324|ref|YP_060296.1| GntR family transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|50903398|gb|AAT87113.1| Transcriptional regulator, GntR family [Streptococcus pyogenes MGAS10394] Length = 153 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98 >gi|37679692|ref|NP_934301.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus YJ016] gi|37198437|dbj|BAC94272.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus YJ016] Length = 257 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +L Y + ++E +S + K + L G+V R GG+ L Sbjct: 14 ILAYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISL 63 >gi|333025293|ref|ZP_08453357.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332745145|gb|EGJ75586.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 372 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +AEA +S + + L L +AG+V + R RG L Sbjct: 317 LAEAHGLSAPEISRHLAVLKRAGLVTSSR--RGRYVL 351 >gi|311105804|ref|YP_003978657.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760493|gb|ADP15942.1| bacterial regulatory protein, GntR family protein 28 [Achromobacter xylosoxidans A8] Length = 247 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 17/33 (51%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S + + + L +G V+T RG Sbjct: 49 ELAQMFAVSRNVVREAIARLKLSGYVDTRRGVG 81 >gi|297157248|gb|ADI06960.1| putative HTH-type transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 189 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 + I Q+A+A + + + L++AG++E + +GG L R T+ Sbjct: 79 EGALSIGQLADALGLDVSTVNRQTGALLRAGLLERIPDPKGG--LARKLRATTLG 131 >gi|297517202|ref|ZP_06935588.1| transcriptional regulator, GntR family protein [Escherichia coli OP50] Length = 97 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|271969820|ref|YP_003344016.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512995|gb|ACZ91273.1| Transcriptional regulators-like protein [Streptosporangium roseum DSM 43021] Length = 287 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V++ D P++ +A I+ + K+L L +AG V R Sbjct: 49 VVLDMLADEDAPSQ-QDLAHRLGINRTIMVKLLDRLQQAGYVTRTR 93 >gi|256380772|ref|YP_003104432.1| GntR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925075|gb|ACU40586.1| transcriptional regulator, GntR family with aminotransferase domain [Actinosynnema mirum DSM 43827] Length = 487 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 10 GIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +R+L+ ++AEA +S + L L G+V + RG Sbjct: 38 AVRMLVLDGRLPAGTRLPAEREMAEALPVSRTMVSAALDQLRAEGLVASRRGAG 91 >gi|297567593|ref|YP_003686564.1| hypothetical protein Mesil_3239 [Meiothermus silvanus DSM 9946] gi|296852042|gb|ADH65056.1| hypothetical protein Mesil_3239 [Meiothermus silvanus DSM 9946] Length = 263 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 9/76 (11%) Query: 1 MHLT----KRTDYGIRVLMYCAIHNDYPNRISQIAEACCIS--ELFLFKILQPLVKAGIV 54 M LT + +LM + P I L ++ L +AG V Sbjct: 94 MRLTDLFFAFPRLPLLILMSLYLRP-SPLNAVLILALFGWPDTARTLRPLVAALREAGYV 152 Query: 55 ETVR--GRRGGVRLCR 68 R G G L R Sbjct: 153 RVARSLGAGGAYLLAR 168 >gi|328472133|gb|EGF43008.1| GntR family transcriptional regulator [Listeria monocytogenes 220] Length = 87 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + I + A ++ + K Q L + ++ TV+G+ Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72 >gi|255655638|ref|ZP_05401047.1| GntR family transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451641|ref|ZP_06893375.1| GntR family transcriptional regulator [Clostridium difficile NAP08] gi|296878886|ref|ZP_06902886.1| GntR family transcriptional regulator [Clostridium difficile NAP07] gi|296259559|gb|EFH06420.1| GntR family transcriptional regulator [Clostridium difficile NAP08] gi|296430158|gb|EFH16005.1| GntR family transcriptional regulator [Clostridium difficile NAP07] Length = 122 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +AE ++ + K L L + G+V + R Sbjct: 31 GSKLETVRALAEDAEVNPNTMQKALTELERQGLVYSQR 68 >gi|222475764|ref|YP_002564285.1| hypothetical protein Hlac_2835 [Halorubrum lacusprofundi ATCC 49239] gi|222454135|gb|ACM58399.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 306 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 + VL Y D P +++IA+ + ++L+ G+V T GR Sbjct: 88 ALEVLYYL----DQPRTVAEIADRSDNYRNTVNRVLKRFRNCGLVGTDDGR 134 >gi|126738098|ref|ZP_01753819.1| transcriptional regulator, DeoR family protein [Roseobacter sp. SK209-2-6] gi|126720595|gb|EBA17300.1| transcriptional regulator, DeoR family protein [Roseobacter sp. SK209-2-6] Length = 258 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 L+ R +++A+ +SE + + ++ L KAG+VE V GG L Sbjct: 8 LLEALRRLGGSGRSAELAKVLDVSEETVRRTIKALAKAGVVERV---HGGAYL 57 >gi|121594776|ref|YP_986672.1| ArsR family transcriptional regulator [Acidovorax sp. JS42] gi|222110609|ref|YP_002552873.1| ArsR family transcriptional regulator [Acidovorax ebreus TPSY] gi|120606856|gb|ABM42596.1| transcriptional regulator, ArsR family [Acidovorax sp. JS42] gi|221730053|gb|ACM32873.1| transcriptional regulator, ArsR family [Acidovorax ebreus TPSY] Length = 107 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM + + ++ + I + L + L L + G+V+T R Sbjct: 33 LMLLCQLTEGERTVGELEQLTGIGQPTLSQQLGVLRRDGLVQTRR 77 >gi|94994968|ref|YP_603066.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS10750] gi|123382151|sp|Q1J564|CODY_STRPF RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|94548476|gb|ABF38522.1| Transcription pleiotropic repressor codY [Streptococcus pyogenes MGAS10750] Length = 260 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|311280533|ref|YP_003942764.1| transcriptional regulator, ArsR family [Enterobacter cloacae SCF1] gi|308749728|gb|ADO49480.1| transcriptional regulator, ArsR family [Enterobacter cloacae SCF1] Length = 112 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ C + +S+I A I + L + L L + +V T R Sbjct: 29 RLLLLCHLSQGE-ASVSEIEAALGIGQPTLSQQLGVLRRENLVSTRR 74 >gi|298251436|ref|ZP_06975239.1| transcriptional regulator, MarR family [Ktedonobacter racemifer DSM 44963] gi|297546028|gb|EFH79896.1| transcriptional regulator, MarR family [Ktedonobacter racemifer DSM 44963] Length = 143 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++ ++ + S++A + + K++Q + +AG+VE Sbjct: 40 MLLLSLQREDGLTQSELATIHNVDLSTITKVVQRIERAGLVE 81 >gi|258651196|ref|YP_003200352.1| GntR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554421|gb|ACV77363.1| transcriptional regulator, GntR family [Nakamurella multipartita DSM 44233] Length = 244 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + P ++AE S + + + LV G +E +GR Sbjct: 21 LAPGSPVPTERELAERFGTSRTTVRQAIAELVVDGRLERTQGRG 64 >gi|300024504|ref|YP_003757115.1| transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526325|gb|ADJ24794.1| putative transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] Length = 89 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR------GRRGGVRL 66 IA +S K ++ L + G+V + GR+GG L Sbjct: 30 DIAARFAMSTDAARKHMKQLQRDGLVRSRPDTYSFSGRQGGPVL 73 >gi|255606793|ref|XP_002538636.1| conserved hypothetical protein [Ricinus communis] gi|223511267|gb|EEF23748.1| conserved hypothetical protein [Ricinus communis] Length = 241 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 12 RVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 RVL ++ +IAE +S + + L+ L K G+V+ GR Sbjct: 20 RVLADAISDGSLAPGTRLTQEEIAEQFAVSRSPVLQALRLLKKDGLVQDAPGRG 73 >gi|189460016|ref|ZP_03008801.1| hypothetical protein BACCOP_00651 [Bacteroides coprocola DSM 17136] gi|189433266|gb|EDV02251.1| hypothetical protein BACCOP_00651 [Bacteroides coprocola DSM 17136] Length = 242 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 15/33 (45%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++E IS L + + LV G++ +G Sbjct: 39 DLSERLNISRNTLRQAINKLVFEGLLIRKKGVG 71 >gi|158312743|ref|YP_001505251.1| MarR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108148|gb|ABW10345.1| transcriptional regulator, MarR family [Frankia sp. EAN1pec] Length = 157 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 24/43 (55%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL+ A Y R+S++A+ +S L +++ L + G+VE Sbjct: 41 VLVQLAEAPGYQLRMSELAQKVLLSRSGLTRLVDRLEREGLVE 83 >gi|254230842|ref|ZP_04924169.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C] gi|308231564|ref|ZP_07412931.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu001] gi|308369408|ref|ZP_07417681.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu002] gi|308370425|ref|ZP_07421453.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu003] gi|308371684|ref|ZP_07425823.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu004] gi|308372907|ref|ZP_07430354.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu005] gi|308374018|ref|ZP_07434540.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu006] gi|308375172|ref|ZP_07442974.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu007] gi|308376414|ref|ZP_07438763.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu008] gi|308377437|ref|ZP_07479165.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu009] gi|308378650|ref|ZP_07483359.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu010] gi|308379792|ref|ZP_07487592.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu011] gi|308395580|ref|ZP_07492095.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu012] gi|124599901|gb|EAY58911.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C] gi|308216811|gb|EFO76210.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu001] gi|308327673|gb|EFP16524.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu002] gi|308332024|gb|EFP20875.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu003] gi|308335811|gb|EFP24662.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu004] gi|308339416|gb|EFP28267.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu005] gi|308343292|gb|EFP32143.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu006] gi|308347187|gb|EFP36038.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu007] gi|308351129|gb|EFP39980.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu008] gi|308355759|gb|EFP44610.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu009] gi|308359818|gb|EFP48669.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu010] gi|308363621|gb|EFP52472.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu011] gi|308367275|gb|EFP56126.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis SUMu012] gi|323721170|gb|EGB30232.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length = 238 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84 +AE ++ L + L L + G++E G + R + +T VV+A Sbjct: 42 RDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSG---SVVRDPEGLTHPAVVEALVRKLG 98 Query: 85 SFFVAECFASHKIDCPLVGS 104 F+ E PL+G Sbjct: 99 PDFLVELLEIRAALGPLIGR 118 >gi|86356502|ref|YP_468394.1| IclR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280604|gb|ABC89667.1| probable transcriptional regulator protein, IclR family [Rhizobium etli CFN 42] Length = 264 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + VL+ H D P R + I L + L LV+ G++E Sbjct: 19 LMVLLDLVTHADTPLRFTDILARAGQPRGTLHRQLSHLVEEGLLE 63 >gi|7542434|gb|AAF63446.1|AF218267_3 ArgR-like transcriptional regulator [Pseudomonas putida] Length = 351 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 10 GIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51 G+R L + + P I +IAE +S L ++ + V+A Sbjct: 238 GVRLALELMHANIEDPIGIDEIAEHAGLSRRHLERLFRRHVQA 280 >gi|15891477|ref|NP_357149.1| GntR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15159889|gb|AAK89934.1| transcriptional regulator, GntR family [Agrobacterium tumefaciens str. C58] Length = 242 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 2 HLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 ++ +R A D S++ +S + + + L G+VE Sbjct: 15 KISS----ALR--RDLAEGVFRPGDRLPSESELTREYSVSRTVVREAIAILRADGLVEAR 68 Query: 58 RGRRGGVRL-CRPADQITILD--------VVKATE 83 +G G + +PA ++ D V++ E Sbjct: 69 KGA-GVFAIEAKPAKEVPFNDLAVGRISSVIELLE 102 >gi|77457050|ref|YP_346555.1| GntR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381053|gb|ABA72566.1| putative GntR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 274 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 13/119 (10%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLC 67 D S I EA +S + + + L AG VET G G R+ Sbjct: 59 LLKRGDKLPTESAIMEAHGVSRTVVREAISRLQAAGQVETRHGIGTFVLDTPSPSGFRI- 117 Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 PA +T+ DV+ E + S + + L + +R AL+A D + S Sbjct: 118 DPATVVTLRDVLAILELRISLE--VESAGLAAQRRSAEQL-AAMRAALDALNDSVAHAS 173 >gi|54025866|ref|YP_120108.1| hypothetical protein nfa38960 [Nocardia farcinica IFM 10152] gi|54017374|dbj|BAD58744.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 88 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGR 60 RV+ I+++ ++ + + + ++ L G++ E RGR Sbjct: 7 RVMAALNEQPGKQLTIAELIDSTGDNPAHVRRAVKALADRGLLAEATRGR 56 >gi|332520093|ref|ZP_08396557.1| AsnC-like transcription regulator [Lacinutrix algicola 5H-3-7-4] gi|332044652|gb|EGI80846.1| AsnC-like transcription regulator [Lacinutrix algicola 5H-3-7-4] Length = 156 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R LM D + +IA IS + + L+ L K+G++ + Sbjct: 18 LRALM-----ADARTSVLEIARQVGISGAAIHQRLRKLEKSGLIAGSK 60 >gi|307269467|ref|ZP_07550807.1| HTH domain protein [Enterococcus faecalis TX4248] gi|306514215|gb|EFM82790.1| HTH domain protein [Enterococcus faecalis TX4248] Length = 121 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +L+ + +IA+ IS +++ ++ L +AGI + + G+ G L Sbjct: 10 ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFL 60 >gi|300112991|ref|YP_003759566.1| heat-inducible transcription repressor HrcA [Nitrosococcus watsonii C-113] gi|299538928|gb|ADJ27245.1| heat-inducible transcription repressor HrcA [Nitrosococcus watsonii C-113] Length = 349 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAE--ACCISELFLFKILQPLVKAGIVET 56 ++ ++ C I + P ++ +S + ++ L + G+V + Sbjct: 18 LKAMVECYIRDGEPVGSRTLSRESRLDLSPATIRNVMADLEELGLVFS 65 >gi|169334126|ref|ZP_02861319.1| hypothetical protein ANASTE_00519 [Anaerofustis stercorihominis DSM 17244] gi|169258843|gb|EDS72809.1| hypothetical protein ANASTE_00519 [Anaerofustis stercorihominis DSM 17244] Length = 149 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ + +S +AE S + +I+ L G ++ VR Sbjct: 41 VLVVIDTFKEEYPSLSDVAEMVGSSHQNVKQIVNKLTDKGYLQIVR 86 >gi|241113521|ref|YP_002973356.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861729|gb|ACS59395.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 117 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +L A + +S +A+ +S+ + L L + +V+T R + Sbjct: 32 LHILHLLA---EGEMSVSVLADEVGLSQSSTSQHLAILREQELVQTRRAAQ 79 >gi|126699221|ref|YP_001088118.1| GntR family transcriptional regulator [Clostridium difficile 630] gi|254975249|ref|ZP_05271721.1| GntR family transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092639|ref|ZP_05322117.1| GntR family transcriptional regulator [Clostridium difficile CIP 107932] gi|255100745|ref|ZP_05329722.1| GntR family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306629|ref|ZP_05350800.1| GntR family transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314376|ref|ZP_05355959.1| GntR family transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517055|ref|ZP_05384731.1| GntR family transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650158|ref|ZP_05397060.1| GntR family transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683282|ref|YP_003214567.1| GntR family transcriptional regulator [Clostridium difficile CD196] gi|260686878|ref|YP_003218011.1| GntR family transcriptional regulator [Clostridium difficile R20291] gi|306520153|ref|ZP_07406500.1| GntR-family transcriptional regulator [Clostridium difficile QCD-32g58] gi|115250658|emb|CAJ68482.1| Transcriptional regulator, GntR family [Clostridium difficile] gi|260209445|emb|CBA62948.1| GntR-family transcriptional regulator [Clostridium difficile CD196] gi|260212894|emb|CBE04131.1| GntR-family transcriptional regulator [Clostridium difficile R20291] Length = 122 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + +AE ++ + K L L + G+V + R Sbjct: 31 GSKLETVRALAEDAEVNPNTMQKALTELERQGLVYSQR 68 >gi|83590615|ref|YP_430624.1| IclR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573529|gb|ABC20081.1| transcriptional regulator, IclR family [Moorella thermoacetica ATCC 39073] Length = 272 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 7/73 (9%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + +L A + ++++A + + L +L L G +E G RL Sbjct: 21 ALMILDLLAA-SQREMSLAELAREMELPKSTLHGLLSTLRDYGYIE-QSAFDGRYRLG-- 76 Query: 70 ADQITILDVVKAT 82 I + ++ A Sbjct: 77 ---IRLFEIGNAV 86 >gi|83951610|ref|ZP_00960342.1| pyruvate dehydrogenase complex repressor [Roseovarius nubinhibens ISM] gi|83836616|gb|EAP75913.1| pyruvate dehydrogenase complex repressor [Roseovarius nubinhibens ISM] Length = 254 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 19/51 (37%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +L + +AE +S L + L L G+++T G Sbjct: 21 LLILRGILRPGERLPSERDLAERLGVSRPSLREALAELQGKGLLQTRPGAG 71 >gi|116751196|ref|YP_847883.1| SOS-response transcriptional repressor LexA [Syntrophobacter fumaroxidans MPOB] gi|116700260|gb|ABK19448.1| SOS-response transcriptional repressor, LexA [Syntrophobacter fumaroxidans MPOB] Length = 207 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +P + +++E IS + LV+ G ++ G+ G+ + R + Sbjct: 27 KGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGIAVARRPSE 78 >gi|330992035|ref|ZP_08315984.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter sp. SXCC-1] gi|329761056|gb|EGG77551.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter sp. SXCC-1] Length = 117 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T + + H +A + + + L L +AG++ + R Sbjct: 13 LSQSTR--LEIFRLLVRHEPDGLPAGDVARHLDMPQNTISAHLATLTRAGLLTSQR 66 >gi|325962298|ref|YP_004240204.1| GntR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468385|gb|ADX72070.1| transcriptional regulator, GntR family [Arthrobacter phenanthrenivorans Sphe3] Length = 246 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A +S + K + LV++G++ RG Sbjct: 45 DLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 77 >gi|303240415|ref|ZP_07326932.1| transcriptional regulator, MarR family [Acetivibrio cellulolyticus CD2] gi|302591980|gb|EFL61711.1| transcriptional regulator, MarR family [Acetivibrio cellulolyticus CD2] Length = 151 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +IS+++E +S + IL L K G+V+ VR Sbjct: 49 GKIKISELSEKVNLSNSTVSGILDRLEKQGLVQRVR 84 >gi|296161198|ref|ZP_06844007.1| transcriptional regulator, ArsR family [Burkholderia sp. Ch1-1] gi|295888539|gb|EFG68348.1| transcriptional regulator, ArsR family [Burkholderia sp. Ch1-1] Length = 110 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 7 TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60 + I R L+ + +IA+ +S L L+ L AG+V + +GR Sbjct: 17 SRLAIFRALV---VAGPEGMPAGEIAQQLGLSPSGLSFHLKDLSHAGLVNSEQKGR 69 >gi|284042350|ref|YP_003392690.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946571|gb|ADB49315.1| transcriptional regulator, GntR family [Conexibacter woesei DSM 14684] Length = 134 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 L ++ + +R + D + ++ I+ + K + L G+V G Sbjct: 21 QLVRQVRHALR--LGLLREGDQLPTVKEVVAQLAINPNTVLKAYRELEHDGLVAAKPGVG 78 >gi|255021894|ref|ZP_05293904.1| transcriptional regulator, Crp/Fnr family [Acidithiobacillus caldus ATCC 51756] gi|254968718|gb|EET26270.1| transcriptional regulator, Crp/Fnr family [Acidithiobacillus caldus ATCC 51756] Length = 227 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 P + + IA I+ L ++L+ L +AGI+ + GR Sbjct: 176 PAKKATIAGRIGITPETLSRVLRRLREAGII-AIEGRH 212 >gi|153827770|ref|ZP_01980437.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae 623-39] gi|148876615|gb|EDL74750.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae 623-39] Length = 452 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|148553664|ref|YP_001261246.1| MarR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498854|gb|ABQ67108.1| transcriptional regulator, MarR family [Sphingomonas wittichii RW1] Length = 157 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 RVLM +S+IAE + + KI+Q + G+V Sbjct: 53 RVLMCL--KEGQATSVSEIAELAIVKLPTMTKIVQRMQADGLVT 94 >gi|78065779|ref|YP_368548.1| IclR family transcriptional regulator [Burkholderia sp. 383] gi|77966524|gb|ABB07904.1| transcriptional regulator, IclR family [Burkholderia sp. 383] Length = 211 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|73539271|ref|YP_299638.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72122608|gb|AAZ64794.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 247 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +AE ++ + + +Q L G++++ RG Sbjct: 41 RDLAEQYDVARNTVREAIQRLAARGLLQSRRGAG 74 >gi|15901426|ref|NP_346030.1| transcriptional repressor CodY [Streptococcus pneumoniae TIGR4] gi|111657435|ref|ZP_01408186.1| hypothetical protein SpneT_02001364 [Streptococcus pneumoniae TIGR4] gi|48474611|sp|Q97PM1|CODY_STRPN RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|14973076|gb|AAK75670.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pneumoniae TIGR4] Length = 262 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79 N+ S IA+ I+ + L+ L AGI+E+ G +G ++ I D+ Sbjct: 201 NEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLISDIF 254 Query: 80 KAT 82 + Sbjct: 255 EEV 257 >gi|115351621|ref|YP_773460.1| IclR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281609|gb|ABI87126.1| transcriptional regulator, IclR family [Burkholderia ambifaria AMMD] Length = 247 Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L P ++++A + + + LV G + VR +RGG R I Sbjct: 12 LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70 Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133 + AT+ + H L + T+VL K T + +V + Sbjct: 71 AAA--IDATDPVVDIV-----HPHLVALRDASRETAVLGKIQG------TSVTYLDVVES 117 Query: 134 RSSIK 138 +I+ Sbjct: 118 EQAIR 122 >gi|325962817|ref|YP_004240723.1| hypothetical protein Asphe3_14150 [Arthrobacter phenanthrenivorans Sphe3] gi|323468904|gb|ADX72589.1| hypothetical protein Asphe3_14150 [Arthrobacter phenanthrenivorans Sphe3] Length = 123 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61 + A+ D ++ IA I+ +IL+ L AG +E R GRR Sbjct: 33 VLLAVARDPDILVADIAGRVGITTRAALQILKDLETAGYLERARVGRR 80 >gi|323494410|ref|ZP_08099519.1| DeoR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311340|gb|EGA64495.1| DeoR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 240 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL 66 + + ++++ + S + + L L G V ++ GR GG+RL Sbjct: 14 LRRNGTATVAELVQEVGASRRTVLRDLNVLRDEGFVIDSEPGRGGGLRL 62 >gi|310641949|ref|YP_003946707.1| marr family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309246899|gb|ADO56466.1| MarR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 186 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 21/121 (17%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 LT R Y +++ A + + IA S+ K++ L G + T + Sbjct: 37 KLTSR-QY--MIMLAIAHLPEDETTLVNIARKLETSKQSAQKLIVNLENKGYLITTPSK- 92 Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121 R I + + E ++C C + + + +V Sbjct: 93 ------RDKRAINV-----------EITELGKRVMLECGEKAICLMADIFNEFTTEELEV 135 Query: 122 L 122 L Sbjct: 136 L 136 >gi|296393959|ref|YP_003658843.1| DtxR family iron (metal) dependent repressor [Segniliparus rotundus DSM 44985] gi|296181106|gb|ADG98012.1| iron (metal) dependent repressor, DtxR family [Segniliparus rotundus DSM 44985] Length = 233 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 DY ++VL ++ P +AE +S + ++ LV G+VE R G V L Sbjct: 19 DY-LKVLWNLGEWSEAPVTTKLLAEKLGVSASTASEGVRKLVDQGLVEHER--YGSVSLT 75 Query: 68 RPADQITILDVVK 80 + + VV+ Sbjct: 76 QDGRAAAVS-VVR 87 >gi|288932138|ref|YP_003436198.1| TrmB family transcriptional regulator [Ferroglobus placidus DSM 10642] gi|288894386|gb|ADC65923.1| transcriptional regulator, TrmB [Ferroglobus placidus DSM 10642] Length = 253 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 + L+ +++E I ++++L+ L + G VE G Sbjct: 23 ALVALLRL-----NEATAREVSENTGIPRTKVYEVLRRLAEKGFVEIQPG 67 >gi|251783239|ref|YP_002997544.1| transcriptional repressor CodY [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391871|dbj|BAH82330.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127964|gb|ADX25261.1| transcriptional repressor CodY [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 260 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|258573149|ref|XP_002540756.1| predicted protein [Uncinocarpus reesii 1704] gi|237901022|gb|EEP75423.1| predicted protein [Uncinocarpus reesii 1704] Length = 423 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQP 47 + D IS+IA+ C ISE L +IL+ Sbjct: 105 VPPDGQISISEIAKKCNISEEVLARILRQ 133 >gi|229589468|ref|YP_002871587.1| putative GntR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361334|emb|CAY48201.1| putative GntR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 259 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------AD 71 D SQ+ +S + +++ L AG VET G G L P Sbjct: 46 RGDQLPTESQLMAEQGVSRTVVREVMSRLQAAGQVETRHGI-GSFVLSPPCTDSFRLDPS 104 Query: 72 Q-ITILDVVKATEESFFV 88 +TI +V+ E + Sbjct: 105 TMVTIREVLAILELRIAL 122 >gi|258510649|ref|YP_003184083.1| transcriptional regulator, GntR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477375|gb|ACV57694.1| transcriptional regulator, GntR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 137 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A + I+ + K Q L ++ ++E VRGR Sbjct: 35 GDRLPSVRDLAVSLAINHNTVAKAYQELERSRVIEVVRGRG 75 >gi|222153638|ref|YP_002562815.1| transcriptional repressor CodY [Streptococcus uberis 0140J] gi|254765874|sp|B9DVH6|CODY_STRU0 RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|222114451|emb|CAR43273.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus uberis 0140J] Length = 260 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|221207776|ref|ZP_03580783.1| transcriptional regulator, ArsR family [Burkholderia multivorans CGD2] gi|221172273|gb|EEE04713.1| transcriptional regulator, ArsR family [Burkholderia multivorans CGD2] Length = 116 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 7 TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + I R L+ + +IA+ +S L L+ L AG+V++ + Sbjct: 20 SRLAIFRALVVAGPNG---LAAGEIAQRLGLSPSGLSFHLKDLSHAGLVQSRQ 69 >gi|171185535|ref|YP_001794454.1| ArsR family transcriptional regulator [Thermoproteus neutrophilus V24Sta] gi|170934747|gb|ACB40008.1| transcriptional regulator, ArsR family [Thermoproteus neutrophilus V24Sta] Length = 293 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 + P S++A +S + L+ L +AG+V + Sbjct: 242 VEERGPLTASEVAALTGLSPRTVRYALEKLREAGLVRST 280 >gi|169632101|ref|YP_001705837.1| DNA-binding transcriptional repressor LldR [Acinetobacter baumannii SDF] gi|169797723|ref|YP_001715516.1| DNA-binding transcriptional repressor LldR [Acinetobacter baumannii AYE] gi|184156414|ref|YP_001844753.1| DNA-binding transcriptional repressor LldR [Acinetobacter baumannii ACICU] gi|213155486|ref|YP_002317531.1| L-lactate utilization transcriptional repressor [Acinetobacter baumannii AB0057] gi|215485075|ref|YP_002327316.1| Putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii AB307-0294] gi|239503802|ref|ZP_04663112.1| DNA-binding transcriptional repressor LldR [Acinetobacter baumannii AB900] gi|260557672|ref|ZP_05829886.1| transcriptional repressor for L-lactate utilization [Acinetobacter baumannii ATCC 19606] gi|301346086|ref|ZP_07226827.1| DNA-binding transcriptional repressor LldR [Acinetobacter baumannii AB056] gi|301511328|ref|ZP_07236565.1| DNA-binding transcriptional repressor LldR [Acinetobacter baumannii AB058] gi|301594186|ref|ZP_07239194.1| DNA-binding transcriptional repressor LldR [Acinetobacter baumannii AB059] gi|332853801|ref|ZP_08434984.1| putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii 6013150] gi|332869243|ref|ZP_08438668.1| putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii 6013113] gi|332875542|ref|ZP_08443355.1| putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii 6014059] gi|169150650|emb|CAM88559.1| transcriptional repressor for L-lactate utilization (GntR family) [Acinetobacter baumannii AYE] gi|169150893|emb|CAO99499.1| transcriptional repressor for L-lactate utilization (GntR family) [Acinetobacter baumannii] gi|183208008|gb|ACC55406.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|193075982|gb|ABO10563.2| L-lactate utilization transcriptional repressor (GntR family) [Acinetobacter baumannii ATCC 17978] gi|213054646|gb|ACJ39548.1| L-lactate utilization transcriptional repressor [Acinetobacter baumannii AB0057] gi|213987593|gb|ACJ57892.1| Putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii AB307-0294] gi|260408845|gb|EEX02149.1| transcriptional repressor for L-lactate utilization [Acinetobacter baumannii ATCC 19606] gi|332728393|gb|EGJ59770.1| putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii 6013150] gi|332732865|gb|EGJ64078.1| putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii 6013113] gi|332736245|gb|EGJ67259.1| putative L-lactate dehydrogenase operon regulatory protein [Acinetobacter baumannii 6014059] Length = 250 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 1 MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + ++ L+ + D Q+A + +S L + +Q L G++ + Sbjct: 1 MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLISR 59 Query: 58 RG 59 RG Sbjct: 60 RG 61 >gi|241113077|ref|YP_002972912.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861285|gb|ACS58951.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 412 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 13/82 (15%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R ++ IH P ++IA ++ + +I+ L+ G++ R R G L Sbjct: 26 RAIVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG---LRGQP- 81 Query: 72 QITILDVVKATEESFFVAECFA 93 A E CFA Sbjct: 82 ---------AIELEINPDACFA 94 >gi|161522409|ref|YP_001585338.1| ArsR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348715|ref|YP_001941911.1| ArsR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198547|ref|ZP_03571592.1| transcriptional regulator, ArsR family [Burkholderia multivorans CGD2M] gi|160345962|gb|ABX19046.1| transcriptional regulator, ArsR family [Burkholderia multivorans ATCC 17616] gi|189338853|dbj|BAG47921.1| ArsR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221180998|gb|EEE13400.1| transcriptional regulator, ArsR family [Burkholderia multivorans CGD2M] Length = 113 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 7 TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + I R L+ + +IA+ +S L L+ L AG+V++ + Sbjct: 17 SRLAIFRALVVAGPNG---LAAGEIAQRLGLSPSGLSFHLKDLSHAGLVQSRQ 66 >gi|50914851|ref|YP_060823.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS10394] gi|94989143|ref|YP_597244.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS9429] gi|94991089|ref|YP_599189.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS10270] gi|94993036|ref|YP_601135.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS2096] gi|50903925|gb|AAT87640.1| Transcription pleiotropic repressor [Streptococcus pyogenes MGAS10394] gi|94542651|gb|ABF32700.1| transcription pleiotropic repressor [Streptococcus pyogenes MGAS9429] gi|94544597|gb|ABF34645.1| Transcription pleiotropic repressor codY [Streptococcus pyogenes MGAS10270] gi|94546544|gb|ABF36591.1| Transcription pleiotropic repressor codY [Streptococcus pyogenes MGAS2096] Length = 281 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 222 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 267 >gi|110347010|ref|YP_665828.1| ArsR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283121|gb|ABG61181.1| transcriptional regulator, ArsR family [Chelativorans sp. BNC1] Length = 124 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 R+LM H IA + + L L +AG++E R R + R Sbjct: 22 FRLLME---HEPGGLPAGDIARHLAVPHNTMSTHLAILSRAGLIEAERHSRSIIYRAR-- 76 Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99 LD V+ F V +C H C Sbjct: 77 -----LDAVRDLTG-FLVKDCCGGHPEIC 99 >gi|325920631|ref|ZP_08182543.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325548887|gb|EGD19829.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 297 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48 R MY ++D RI+++A+ S ++ K Q L Sbjct: 177 RARMYLEGNSDRVVRIAELAQLTNFSSWYVSKTFQSL 213 >gi|309951508|gb|ADO95174.1| transcriptional regulator/arsenate reductase bifunctional protein [Sinorhizobium sp. M14] Length = 273 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 H+ I + + + L L +AG+V+T R Sbjct: 28 HSPEGLPSGDIGRLLDVPQNTMSSHLNVLKRAGLVQTQR 66 >gi|319638039|ref|ZP_07992803.1| regulatory protein ArsR [Neisseria mucosa C102] gi|317400684|gb|EFV81341.1| regulatory protein ArsR [Neisseria mucosa C102] Length = 100 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 22/41 (53%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L ++ P+ ++++AE+ + + + L L +AG+V Sbjct: 26 LAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66 >gi|302343271|ref|YP_003807800.1| LexA family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639884|gb|ADK85206.1| transcriptional repressor, LexA family [Desulfarculus baarsii DSM 2075] Length = 207 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +P + +++E IS + LV+ G ++ G+ G+ + R + Sbjct: 27 KGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGIAVARRPSE 78 >gi|298247454|ref|ZP_06971259.1| transcriptional regulator, GntR family [Ktedonobacter racemifer DSM 44963] gi|297550113|gb|EFH83979.1| transcriptional regulator, GntR family [Ktedonobacter racemifer DSM 44963] Length = 156 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + Q+A I+ + K L + G++E+ +G Sbjct: 35 GDQLPTVRQLASELTIAPNTIVKAYDELARLGLIESRQGVG 75 >gi|295676948|ref|YP_003605472.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] gi|295436791|gb|ADG15961.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] Length = 308 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+L A H+D P + ++A + +IL +V +V+ R G RL Sbjct: 50 MRLLDALAAHSD-PVSLKELALRTELHPSTAHRILNDMVMCRLVD--RSDPGTYRLGMRL 106 Query: 71 DQITILDVVKA 81 + + ++VKA Sbjct: 107 LE--LGNLVKA 115 >gi|295395125|ref|ZP_06805334.1| IclR family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972073|gb|EFG47939.1| IclR family transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 255 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 + +L + A ++ P IA + + ++IL L + G+V V G L Sbjct: 10 AVAILRHLAA-SNRPISAGAIARSGNVPRSSAYEILNVLEELGLVTKV---DAGYLLG 63 >gi|300088777|ref|YP_003759299.1| LexA family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528510|gb|ADJ26978.1| transcriptional repressor, LexA family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 207 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +P + +++E IS + LV+ G ++ G+ G+ + R + Sbjct: 27 KGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGIAVARRPSE 78 >gi|295676212|ref|YP_003604736.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] gi|295436055|gb|ADG15225.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] Length = 281 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 G+ VL A + P ++AE I + + +I LV AG + Sbjct: 33 GLTVLRAVAAAH-APLSNRELAELTGIPKPTVSRITATLVGAGFL 76 >gi|291614779|ref|YP_003524936.1| ArsR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584891|gb|ADE12549.1| transcriptional regulator, ArsR family [Sideroxydans lithotrophicus ES-1] Length = 125 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +L A+ ++++A+ IS + K L+ L +AG++ R Sbjct: 21 ILARLAL---GETSVAELAKPFSISPPAVTKHLKVLQRAGLITQGR 63 >gi|313125908|ref|YP_004036178.1| transcriptional regulator [Halogeometricum borinquense DSM 11551] gi|312292273|gb|ADQ66733.1| transcriptional regulator [Halogeometricum borinquense DSM 11551] Length = 353 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 Y A+ S+IA+ I + ++ ++ L G+VE Sbjct: 26 YLAVLEHGELTASEIADRTDIPQPRVYDTVRSLSDRGLVE 65 >gi|226314255|ref|YP_002774151.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226097205|dbj|BAH45647.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70 RV + ++ N S++A I+ L LV+ G++ + GR RL P Sbjct: 19 RVSILISLMNGKALPASELARNAKITPQTASTHLAKLVEGGLLVSESHGRHRYYRLASP- 77 Query: 71 DQITILDVVKATE 83 DV A E Sbjct: 78 ------DVAHALE 84 >gi|225023150|ref|ZP_03712342.1| hypothetical protein EIKCOROL_00002 [Eikenella corrodens ATCC 23834] gi|224944069|gb|EEG25278.1| hypothetical protein EIKCOROL_00002 [Eikenella corrodens ATCC 23834] Length = 100 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 L ++ P+ ++++AE+ + + + L L +AG+V Sbjct: 24 HRLAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66 >gi|255021243|ref|ZP_05293293.1| two component transcriptional regulator, winged helix family [Acidithiobacillus caldus ATCC 51756] gi|209574034|gb|ACI62955.1| transcriptional activator PhoB family [Acidithiobacillus caldus] gi|254969358|gb|EET26870.1| two component transcriptional regulator, winged helix family [Acidithiobacillus caldus ATCC 51756] Length = 260 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 17/82 (20%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC-----ISELFLFKILQPLVK----AG 52 L++R R+ Y A+H ++IA + E + + L K AG Sbjct: 184 QLSRRI---FRLFHYLALHPGQTFSAAEIAHHLSDGRKFVQENTIAAQIHRLRKALEAAG 240 Query: 53 ---IVETVRGRRGGVRLCRPAD 71 +ETV G G RL PA Sbjct: 241 ADIWLETVHGF--GYRLSVPAS 260 >gi|182416872|ref|ZP_02948258.1| catabolite gene activator [Clostridium butyricum 5521] gi|237668081|ref|ZP_04528065.1| cyclic nucleotide-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379334|gb|EDT76833.1| catabolite gene activator [Clostridium butyricum 5521] gi|237656429|gb|EEP53985.1| cyclic nucleotide-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVE 55 S+IAE S L ++L K GI+E Sbjct: 179 SEIAELLGTSYRHLNRVLNKFCKEGILE 206 >gi|167566017|ref|ZP_02358933.1| transcriptional regulator, ArsR family protein [Burkholderia oklahomensis EO147] Length = 115 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+LM C + +S I I + L + L L +V+T R G+ L Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLAVLRDNALVDTRRDGKNIYYALASQP 91 Query: 71 DQITILDVV 79 I I+ V+ Sbjct: 92 A-IAIMSVL 99 >gi|162149410|ref|YP_001603871.1| ArsR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787987|emb|CAP57591.1| putative transcriptional regulator, ArsR family [Gluconacetobacter diazotrophicus PAl 5] Length = 130 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ H IA + + L L L ++G+V R Sbjct: 36 AFRLLV---RHEPEGLPAGGIAHRLGVPQNTLSTHLAILARSGLVRATR 81 >gi|118576206|ref|YP_875949.1| transcriptional regulator [Cenarchaeum symbiosum A] gi|118194727|gb|ABK77645.1| transcriptional regulator [Cenarchaeum symbiosum A] Length = 255 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 12/66 (18%) Query: 1 MHLTKRTD----------YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50 M +T RT Y IR Y + S+I++ +S ++++L L + Sbjct: 1 MRITDRTRKALTSIGLTGYEIRA--YMELLRSGGMTASEISQRSGVSYSKIYEVLGSLEE 58 Query: 51 AGIVET 56 G + Sbjct: 59 KGWTSS 64 >gi|52080752|ref|YP_079543.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus licheniformis ATCC 14580] gi|52786123|ref|YP_091952.1| hypothetical protein BLi02379 [Bacillus licheniformis ATCC 14580] gi|319645290|ref|ZP_07999523.1| BirA protein [Bacillus sp. BT1B_CT2] gi|52003963|gb|AAU23905.1| transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase [Bacillus licheniformis ATCC 14580] gi|52348625|gb|AAU41259.1| BirA [Bacillus licheniformis ATCC 14580] gi|317393099|gb|EFV73893.1| BirA protein [Bacillus sp. BT1B_CT2] Length = 327 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74 + +I+E S ++K ++ L K+G +E VR + G ++ + D+IT Sbjct: 17 DGEFISGQKISEELGCSRTAVWKHIEDLRKSGYELEAVR--KLGYKMIKKPDKIT 69 >gi|116628143|ref|YP_820762.1| GntR family transcriptional regulator, putative [Streptococcus thermophilus LMD-9] gi|116101420|gb|ABJ66566.1| transcriptional regulator, GntR family [Streptococcus thermophilus LMD-9] gi|312278749|gb|ADQ63406.1| Transcriptional regulator, GntR family [Streptococcus thermophilus ND03] Length = 125 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + A+ ++ + + Q L K G+V + R Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68 >gi|332672135|ref|YP_004455143.1| ArsR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332341173|gb|AEE47756.1| transcriptional regulator, ArsR family [Cellulomonas fimi ATCC 484] Length = 123 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 21/45 (46%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L A H + + E +S+ + L+ L +AG++ Sbjct: 46 LRLLSLIAAHAGGEACVCDLTEPVGLSQPTVSHHLKQLTEAGLLT 90 >gi|331005750|ref|ZP_08329110.1| Biotin-protein ligase [gamma proteobacterium IMCC1989] gi|330420439|gb|EGG94745.1| Biotin-protein ligase [gamma proteobacterium IMCC1989] Length = 325 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 10/67 (14%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M + + VL A + + S+I +A +S ++K LQ L+ G+ VE+V+G Sbjct: 1 MKQST-----LLVLNCLA--DGCFHSGSEIGDAAGVSRAAIWKQLQKLIDIGLDVESVKG 53 Query: 60 RRGGVRL 66 + G RL Sbjct: 54 K--GYRL 58 >gi|327539624|gb|EGF26232.1| Ribonuclease BN [Rhodopirellula baltica WH47] Length = 603 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI---VETVRGRRGGVRLCRPAD 71 + A ++++ +S + ++ L++A V T G+ + L RPA+ Sbjct: 470 VAIAFAEGEAVGRQELSDRLGLSSRVVHEMETRLIEANFLRRVVTGAGQENQLTLARPAN 529 Query: 72 QITILDVVK 80 I + +V++ Sbjct: 530 NILLAEVMR 538 >gi|300711992|ref|YP_003737806.1| hypothetical protein HacjB3_13165 [Halalkalicoccus jeotgali B3] gi|299125675|gb|ADJ16014.1| hypothetical protein HacjB3_13165 [Halalkalicoccus jeotgali B3] Length = 203 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74 M A+ + S IAE +S + L +AG++ R G + RP I+ Sbjct: 120 MVLALLANPATTGSAIAERLDVSTATVSNTAADLEEAGLLT----RSNGYAVERPETLIS 175 Query: 75 IL 76 +L Sbjct: 176 LL 177 >gi|294630542|ref|ZP_06709102.1| GntR-family transcriptional regulator [Streptomyces sp. e14] gi|292833875|gb|EFF92224.1| GntR-family transcriptional regulator [Streptomyces sp. e14] Length = 224 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78 + + +IAE +S + + L L G++E + R G R+ + + D Sbjct: 47 LQPGQEFTVKEIAEQYGVSATPVREALVDLSAQGLLEADQHR--GFRV----HEYSPADF 100 Query: 79 VKATEESFFVAE 90 V+ E V + Sbjct: 101 VEMIEARGLVVD 112 >gi|294085080|ref|YP_003551840.1| ROK family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664655|gb|ADE39756.1| transcriptional regulator, ROK family [Candidatus Puniceispirillum marinum IMCC1322] Length = 413 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 DY +V++Y H ++IA + ++ + I+ L+KAG++++ Sbjct: 14 GDYNEKVVLYHVRHQKQ-VTKAEIARSSGLAAQTVSVIVNRLLKAGLLKSS 63 >gi|283769218|ref|ZP_06342122.1| transcriptional regulator, DeoR family [Bulleidia extructa W1219] gi|283104194|gb|EFC05573.1| transcriptional regulator, DeoR family [Bulleidia extructa W1219] Length = 299 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y S++A+ +S +++ + + AGI + ++G+ GG+ + Sbjct: 7 FRILYYI--LEKGKVTASELADKFEVSVRTIYRDIDSISSAGIPIYALQGKGGGIEIAED 64 >gi|311744319|ref|ZP_07718123.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312492|gb|EFQ82405.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 159 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 23/42 (54%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +++C + P IS++A A +S + + LV+ G+VE Sbjct: 42 MLHCVMRQGEPVAISELARAVGLSTAAAGRNVDQLVRLGLVE 83 >gi|262165748|ref|ZP_06033485.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio mimicus VM223] gi|262025464|gb|EEY44132.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio mimicus VM223] Length = 253 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L Y + ++E +S + K + L G+V R GG+ L P D Sbjct: 11 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 66 Query: 73 ITI 75 ++ Sbjct: 67 LSF 69 >gi|290963236|ref|YP_003494418.1| MarR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260652762|emb|CBG75895.1| putative MarR family transcriptional regulator [Streptomyces scabiei 87.22] Length = 187 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +YG+ + + R+S +A S L +++ L + G V Sbjct: 63 THFEYGV--MAALSESPRRELRMSDLAACAEGSLSRLSQVVARLERKGYVH 111 >gi|302548195|ref|ZP_07300537.1| GntR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465813|gb|EFL28906.1| GntR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR--PADQITILDVVKATEESF 86 +IAE +S + + L+ L + G+V G RG +R+ + P + + V +A E Sbjct: 42 EIAEHLSVSRGTVREALRHLQQEGLVTA--GARGMLRVSQLTPTETRELFQVREALEG-L 98 Query: 87 FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126 +A+ AS + + L L+K +AF + Sbjct: 99 AIAQIIASPR---RKDAAEALRKALKKLQDAFESGADLAT 135 >gi|322420290|ref|YP_004199513.1| regulatory protein GntR HTH [Geobacter sp. M18] gi|320126677|gb|ADW14237.1| regulatory protein GntR HTH [Geobacter sp. M18] Length = 240 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITILD 77 + ++A+ +S + + L L +G+VET +G GG L A + + + Sbjct: 31 GEKLPPERELADMFGVSRPSVREALNILTSSGLVETYQG--GGTLVRSLVENAAGMPLTE 88 Query: 78 VVKATEESFFV 88 +++ + + Sbjct: 89 LIR-IDGDRAL 98 >gi|229821448|ref|YP_002882974.1| ArsR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567361|gb|ACQ81212.1| transcriptional regulator, ArsR family [Beutenbergia cavernae DSM 12333] Length = 183 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET---VRGRRG 62 D P Q+A+A + L ++ LV+ G +E+ RG RG Sbjct: 30 KDTPLTNQQMADALGVPPATLLHHVRLLVERGFLESLPVRRGARG 74 >gi|256392989|ref|YP_003114553.1| DeoR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359215|gb|ACU72712.1| regulatory protein DeoR [Catenulispora acidiphila DSM 44928] Length = 396 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 R++ IA +S + + + + L G++E V GG+RL R A Sbjct: 17 RGPLLRVTDIARTLGVSAVTVRRDVAQLADDGVIERV---HGGIRLPRAAA 64 >gi|227891327|ref|ZP_04009132.1| transcriptional regulator CzrA [Lactobacillus salivarius ATCC 11741] gi|227866905|gb|EEJ74326.1| transcriptional regulator CzrA [Lactobacillus salivarius ATCC 11741] Length = 113 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGV 64 T Y I L+Y + +S+I +S+ + L+ L + G+V R G+R Sbjct: 36 YTRYKILYLLY-----ERELSVSEITSEIGVSQSAISHQLKLLRQTGLVSGRRDGQRILY 90 Query: 65 RLC 67 L Sbjct: 91 SLA 93 >gi|313126625|ref|YP_004036895.1| transcriptional regulator [Halogeometricum borinquense DSM 11551] gi|312292990|gb|ADQ67450.1| predicted transcriptional regulator [Halogeometricum borinquense DSM 11551] Length = 208 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGR 60 A P+ S++A+ S + L L AG+V +V+GR Sbjct: 51 AALQREPSTASELADTVDTSLQNIRHHLDNLRNAGLVRVADTRYSVKGR 99 >gi|225868844|ref|YP_002744792.1| DNA-bind protein [Streptococcus equi subsp. zooepidemicus] gi|225702120|emb|CAW99787.1| putative DNA-bind protein [Streptococcus equi subsp. zooepidemicus] Length = 299 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y S++A+ +S +++ + + AGI + ++G+ GG+ + Sbjct: 7 FRILYYI--LEKGKVTASELADKFEVSVRTIYRDIDSISSAGIPIYALQGKGGGIEIAED 64 >gi|212225019|ref|YP_002308255.1| hypothetical protein TON_1867 [Thermococcus onnurineus NA1] gi|212009976|gb|ACJ17358.1| hypothetical protein TON_1867 [Thermococcus onnurineus NA1] Length = 335 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++ T +RVL P + +++ +S L I + L + G++E Sbjct: 19 ISMLTRAELRVLSVLH----EPATLKELSGQLGVSRSRLSIIARSLEQKGLIE 67 >gi|315231712|ref|YP_004072148.1| HTH-type transcriptional regulator Ptr2 [Thermococcus barophilus MP] gi|315184740|gb|ADT84925.1| HTH-type transcriptional regulator Ptr2 [Thermococcus barophilus MP] Length = 141 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 RV++ + D ++IA+ ISE + K ++ L +AGI++ Sbjct: 7 RVIIDM-LTKDARTPFTEIAKVLGISETAVRKRVRALEEAGIIK 49 >gi|239918528|ref|YP_002958086.1| transcriptional regulator, ArsR family [Micrococcus luteus NCTC 2665] gi|281415263|ref|ZP_06247005.1| transcriptional regulator, ArsR family protein [Micrococcus luteus NCTC 2665] gi|239839735|gb|ACS31532.1| transcriptional regulator, ArsR family [Micrococcus luteus NCTC 2665] Length = 121 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +R+L + A + E IS+ + ++ LV AG++ Sbjct: 50 LRLLSHVAAQGCNSVCACDLTEPLGISQPTVSHHMKKLVDAGLLT 94 >gi|251799102|ref|YP_003013833.1| hypothetical protein Pjdr2_5136 [Paenibacillus sp. JDR-2] gi|247546728|gb|ACT03747.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2] Length = 306 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + + ++Y ++N+ S+++ +S+ +++ ++ + AGI V + +G Sbjct: 1 MKLER-----LISIIYLLLNNE-VVSASELSCKYGVSQRTIYRDIEAICAAGIPVVSYQG 54 Query: 60 RRGGV 64 GG Sbjct: 55 VNGGY 59 >gi|68535092|ref|YP_249797.1| putative DNA-binding protein [Corynebacterium jeikeium K411] gi|68262691|emb|CAI36179.1| putative DNA-binding protein [Corynebacterium jeikeium K411] Length = 463 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + P +AEA +S + + LQ + AG+V RG Sbjct: 409 SGRPMSTGDVAEALGLSAPPVRRALQAMRDAGLVH-WRGNG 448 >gi|57642125|ref|YP_184603.1| ArsR family transcriptional regulator [Thermococcus kodakarensis KOD1] gi|57160449|dbj|BAD86379.1| predicted transcription regulator, ArsR family [Thermococcus kodakarensis KOD1] Length = 102 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 A + P+ Q+A+ ++ + L L K G+V + R G Sbjct: 25 IAALLERPSNARQLAKRLGLNYTTVRYHLDILQKNGLVTSTENRYG 70 >gi|16080556|ref|NP_391383.1| GntR family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311453|ref|ZP_03593300.1| hypothetical protein Bsubs1_18961 [Bacillus subtilis subsp. subtilis str. 168] gi|221315780|ref|ZP_03597585.1| hypothetical protein BsubsN3_18877 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320695|ref|ZP_03601989.1| hypothetical protein BsubsJ_18840 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324980|ref|ZP_03606274.1| hypothetical protein BsubsS_18996 [Bacillus subtilis subsp. subtilis str. SMY] gi|81669158|sp|O34817|YVOA_BACSU RecName: Full=HTH-type transcriptional repressor yvoA gi|283806768|pdb|2WV0|A Chain A, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806769|pdb|2WV0|B Chain B, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806770|pdb|2WV0|C Chain C, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806771|pdb|2WV0|D Chain D, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806772|pdb|2WV0|E Chain E, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806773|pdb|2WV0|F Chain F, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806774|pdb|2WV0|G Chain G, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806775|pdb|2WV0|H Chain H, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806776|pdb|2WV0|I Chain I, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|283806777|pdb|2WV0|J Chain J, Crystal Structure Of The Gntr-Hutc Family Member Yvoa From Bacillus Subtilis gi|2618854|gb|AAC67283.1| YvoA [Bacillus subtilis] gi|2636016|emb|CAB15508.1| transcriptional regulator (GntR family) [Bacillus subtilis subsp. subtilis str. 168] gi|291486055|dbj|BAI87130.1| hypothetical protein BSNT_05332 [Bacillus subtilis subsp. natto BEST195] Length = 243 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D P + AE IS + + + L LV G++ ++GR Sbjct: 28 LQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRG 71 >gi|325525588|gb|EGD03375.1| IclR family regulatory protein [Burkholderia sp. TJI49] Length = 250 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVRLCR 68 L+ + ++ +A I + L ++L L G+V GR+ G RL R Sbjct: 13 ALLEHLVQAGDAVSLADLARDVDIPKASLHRMLASLEAGGLVIREPGRKNAYAVGPRLAR 72 >gi|324999511|ref|ZP_08120623.1| transcriptional regulator, GntR family protein [Pseudonocardia sp. P1] Length = 242 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R+ + A + Q+A +S + + + LV G++E++ G GGV RP Sbjct: 40 LRLAIALAEIPEGKLNQVQVARQLGVSRMPIRAAIPDLVAEGLLESLPG--GGVA-VRPL 96 Query: 71 DQITILDVVKA 81 + + V + Sbjct: 97 TETDVRQVYEV 107 >gi|322411904|gb|EFY02812.1| Transcriptional regulator, GntR family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 123 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68 >gi|322373364|ref|ZP_08047900.1| transcriptional regulator, GntR family [Streptococcus sp. C150] gi|321278406|gb|EFX55475.1| transcriptional regulator, GntR family [Streptococcus sp. C150] Length = 125 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + A+ ++ + + Q L K G+V + R Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68 >gi|313892205|ref|ZP_07825798.1| iron dependent repressor, N-terminal DNA binding domain protein [Dialister microaerophilus UPII 345-E] gi|329121623|ref|ZP_08250244.1| iron-dependent repressor [Dialister micraerophilus DSM 19965] gi|313119343|gb|EFR42542.1| iron dependent repressor, N-terminal DNA binding domain protein [Dialister microaerophilus UPII 345-E] gi|327468778|gb|EGF14255.1| iron-dependent repressor [Dialister micraerophilus DSM 19965] Length = 218 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 2 HLTK-RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 LT + DY ++ +Y ++++ +S + +++ L K G+++ Sbjct: 3 KLTSGKDDY-LKA-IYLITEEHEVVSNKELSDMLQVSPPSVSEMISKLQKQGLID 55 >gi|300916523|ref|ZP_07133255.1| FCD domain protein [Escherichia coli MS 115-1] gi|300416169|gb|EFJ99479.1| FCD domain protein [Escherichia coli MS 115-1] Length = 304 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|255262051|ref|ZP_05341393.1| transcriptional regulator, GntR family [Thalassiobium sp. R2A62] gi|255104386|gb|EET47060.1| transcriptional regulator, GntR family [Thalassiobium sp. R2A62] Length = 242 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR----PA--DQIT 74 ++ +++ + +S + + L+ L ++ T RG GG + R A QIT Sbjct: 31 DERLPSEAELCDQFDVSRSTVREALKRLGAQSLIRTQRGATGGAFVNRLKFEDAYTQQIT 90 Query: 75 ILDVVKATEESFFVAECFAS 94 ++ + E F C A Sbjct: 91 TSTLLLSMNEVSFATACEAR 110 >gi|239928498|ref|ZP_04685451.1| two-component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291436823|ref|ZP_06576213.1| two-component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291339718|gb|EFE66674.1| two-component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 226 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 +H D P +IAE +S + L+ L + G Sbjct: 169 LHADGPLSAQEIAERTGVSRQTAQRYLKLLERTG 202 >gi|313116915|ref|YP_004038039.1| hypothetical protein Hbor_33800 [Halogeometricum borinquense DSM 11551] gi|312294867|gb|ADQ68903.1| hypothetical protein Hbor_33800 [Halogeometricum borinquense DSM 11551] Length = 307 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + IS++A SE +L + + LV+ G+V T R Sbjct: 14 DRGDTISELATKLDHSESYLSRAVADLVEKGLVYTER 50 >gi|222151615|ref|YP_002560771.1| hypothetical protein MCCL_1368 [Macrococcus caseolyticus JCSC5402] gi|222120740|dbj|BAH18075.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 157 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 22/121 (18%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------------GGVR 65 D ++E IS + + L+ L G++ET RG GG Sbjct: 40 GDKLPSERHLSELLNISRSSIREALRALEILGVIETRRGEGTYLSDMDNNQFFELIGGYL 99 Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNAFFDVLT 123 + A I D + E S F HK +C + + V K L + Sbjct: 100 ITSRAQTGEIKDFIHMIESSIT----FEEHKTIEECINTSNTIMFRVW-KLLKRYEATYD 154 Query: 124 Q 124 + Sbjct: 155 E 155 >gi|212638764|ref|YP_002315284.1| manganese transport transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560244|gb|ACJ33299.1| Mn-dependent transcriptional regulator (DtxR family) [Anoxybacillus flavithermus WK1] Length = 162 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K++Q L K G+V T +G++ G R Sbjct: 33 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTPKGKKIGKR 92 Query: 66 L 66 L Sbjct: 93 L 93 >gi|254468689|ref|ZP_05082095.1| transcriptional regulator, MarR-family [beta proteobacterium KB13] gi|207087499|gb|EDZ64782.1| transcriptional regulator, MarR-family [beta proteobacterium KB13] Length = 160 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ + D S+IA+ + + I++ L+ G+++ R Sbjct: 44 VLLVVWENEDTTVTASEIAKKLNLDAPTVTPIIKKLIDQGLIKKQR 89 >gi|167766829|ref|ZP_02438882.1| hypothetical protein CLOSS21_01337 [Clostridium sp. SS2/1] gi|317498816|ref|ZP_07957103.1| arsR family Bacterial regulatory protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711583|gb|EDS22162.1| hypothetical protein CLOSS21_01337 [Clostridium sp. SS2/1] gi|291560595|emb|CBL39395.1| transcriptional regulator, ArsR family [butyrate-producing bacterium SSC/2] gi|316893879|gb|EFV16074.1| arsR family Bacterial regulatory protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 130 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ T +R+L Y H + + IAEA +S + L+ L + G++ + R Sbjct: 44 LSDSTR--LRIL-YLLYHRE--VCVRNIAEAIEMSPPAVSHHLRSLKQLGVITSRR 94 >gi|158425015|ref|YP_001526307.1| regulatory protein [Azorhizobium caulinodans ORS 571] gi|158331904|dbj|BAF89389.1| regulatory protein [Azorhizobium caulinodans ORS 571] Length = 260 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 18 AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A + +++AE ++ + + L L + G+VE GR Sbjct: 47 ARPAGARLPVEAELAERFGVNRHTVRRALGVLTERGLVEATPGRG 91 >gi|149201552|ref|ZP_01878526.1| regulatory protein GntR, HTH [Roseovarius sp. TM1035] gi|149144600|gb|EDM32629.1| regulatory protein GntR, HTH [Roseovarius sp. TM1035] Length = 242 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++A+ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELADHFAVSRPTVREALKRLAAQSLIRTQRGAFGG 73 >gi|146743438|gb|ABQ43165.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Ca] Length = 350 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 20 HNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 P ++IA+ S + L+ L + G++E V G G+RL + ++ Sbjct: 21 QTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEEEE 74 >gi|146743442|gb|ABQ43168.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Cb] Length = 349 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 20 HNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 P ++IA+ S + L+ L + G++E V G G+RL + ++ Sbjct: 21 QTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEEEE 74 >gi|145594712|ref|YP_001159009.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145304049|gb|ABP54631.1| transcriptional regulator, AraC family [Salinispora tropica CNB-440] Length = 281 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 18/35 (51%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 R + Y D P +++IA++ +S + ++ + Sbjct: 7 RAIEYLWERYDRPLTLTEIADSAGLSRFYFARLFR 41 >gi|73537589|ref|YP_297956.1| regulatory protein, IclR [Ralstonia eutropha JMP134] gi|72120926|gb|AAZ63112.1| regulatory protein, IclR [Ralstonia eutropha JMP134] Length = 275 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Query: 10 GIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----- 62 +R+ L+ D+P + + E + + L ++LQ L AG+V+ R G Sbjct: 19 ALRLFGLLEVIATKDHPFNLQALVEETGLPKPTLHRMLQQLEAAGMVQ----RNGDGRHY 74 Query: 63 --GVRLCRPAD 71 G+RL R A+ Sbjct: 75 GTGLRLRRLAE 85 >gi|20094298|ref|NP_614145.1| phosphate uptake regulator [Methanopyrus kandleri AV19] gi|19887344|gb|AAM02075.1| Phosphate uptake regulator [Methanopyrus kandleri AV19] Length = 311 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 D P+ +IAE +S ++ ++L+PL++ G V Sbjct: 19 RDRPSTQKEIAEKVGVSRRYVTELLRPLIEEGAVR 53 >gi|327481590|gb|AEA84900.1| GntR family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 247 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 DY + + +++ A +S + + + L+ L G+V + +G+ Sbjct: 31 GDYAVH---------ERLPSENELMTAFGVSRITIRQALRDLHNEGLVFSAQGKG 76 >gi|322412616|gb|EFY03524.1| transcriptional repressor CodY [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 260 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|209884781|ref|YP_002288638.1| transcriptional regulator, IclR family [Oligotropha carboxidovorans OM5] gi|209872977|gb|ACI92773.1| transcriptional regulator, IclR family [Oligotropha carboxidovorans OM5] Length = 258 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%) Query: 11 IRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-----G 63 +R LM + P +++++ S + ++ Q L + G+V R G G Sbjct: 17 LRAFKLMEAIARSSTPLSATELSDLTGTSRPSVVRLCQTLQEEGLV--SRAIDGKSYTYG 74 Query: 64 VRLCRPADQITIL 76 RLCR I Sbjct: 75 ARLCRLGMDIMAG 87 >gi|169828181|ref|YP_001698339.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992669|gb|ACA40209.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 99 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 I + + IA IS + ++ L + G V R Sbjct: 2 IQKEEEVTVRDIAGLLNISPNTASEHVKKLERHGWVSKER 41 >gi|149916874|ref|ZP_01905375.1| hypothetical protein PPSIR1_21539 [Plesiocystis pacifica SIR-1] gi|149822152|gb|EDM81543.1| hypothetical protein PPSIR1_21539 [Plesiocystis pacifica SIR-1] Length = 211 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M T+R + + +AE +S +++ L L A + V RG Sbjct: 1 MRRTER----LFAITELLRARRTGITAEALAERFEVSVRTIYRDLDSLRAAALPVIGERG 56 Query: 60 RRGGVRLCRP 69 R GG+ L R Sbjct: 57 RGGGLALDRS 66 >gi|126736887|ref|ZP_01752622.1| transcriptional regulator, GntR family protein [Roseobacter sp. SK209-2-6] gi|126721472|gb|EBA18175.1| transcriptional regulator, GntR family protein [Roseobacter sp. SK209-2-6] Length = 249 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 ++++ ++ + + L + + G+V RG GV + + I V Sbjct: 36 QGSKLPSEAKLSARFGVNRHTVRRALAEMAEQGLVHARRGS--GVFVAARPTEYPIGKRV 93 Query: 80 K 80 + Sbjct: 94 R 94 >gi|91788193|ref|YP_549145.1| IclR family transcriptional regulator [Polaromonas sp. JS666] gi|91697418|gb|ABE44247.1| transcriptional regulator, IclR family [Polaromonas sp. JS666] Length = 259 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 L+ + + + +I+E + +IL L V+ R G RL + Sbjct: 23 LLEILANREEAVSLKEISEKSGLHPSTAHRILNDLATGRFVD--RPSAGNYRLGMRLLE- 79 Query: 74 TILDVVKA 81 + ++VKA Sbjct: 80 -LGNLVKA 86 >gi|55821421|ref|YP_139863.1| GntR family transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55823346|ref|YP_141787.1| GntR family transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55737406|gb|AAV61048.1| transcriptional regulator, GntR family, putative [Streptococcus thermophilus LMG 18311] gi|55739331|gb|AAV62972.1| transcriptional regulator, GntR family, putative [Streptococcus thermophilus CNRZ1066] Length = 125 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + A+ ++ + + Q L K G+V + R Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68 >gi|17549468|ref|NP_522808.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431721|emb|CAD18398.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 310 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%) Query: 1 MHLTKRTDYG---IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M + Y RV+ P+ + +A +S +I + L I TV Sbjct: 32 MKPSTERSYAQRIARVVEAIVADPGAPHTVESLAAVAHLSPYHFHRIYRALTGESIAATV 91 Query: 58 RGRRGGVRLCRPADQIT 74 + RL R A ++T Sbjct: 92 QRV----RLARAAHRLT 104 >gi|321313054|ref|YP_004205341.1| GntR family transcriptional regulator [Bacillus subtilis BSn5] gi|320019328|gb|ADV94314.1| transcriptional regulator (GntR family) protein [Bacillus subtilis BSn5] Length = 243 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + D P + AE IS + + + L LV G++ ++GR Sbjct: 28 LQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRG 71 >gi|311107342|ref|YP_003980195.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310762031|gb|ADP17480.1| bacterial regulatory protein, GntR family protein 45 [Achromobacter xylosoxidans A8] Length = 257 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 D ++I+E +S + + L L G++ +G Sbjct: 54 GDKLPSENEISERFGVSRPVVREALLRLRADGLITAHQG 92 >gi|262171429|ref|ZP_06039107.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio mimicus MB-451] gi|261892505|gb|EEY38491.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio mimicus MB-451] Length = 253 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L Y + ++E +S + K + L G+V R GG+ L P D Sbjct: 11 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 66 Query: 73 ITI 75 ++ Sbjct: 67 LSF 69 >gi|260579591|ref|ZP_05847460.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] gi|258602232|gb|EEW15540.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] Length = 461 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + P +AEA +S + + LQ + AG+V RG Sbjct: 407 SGRPMSTGDVAEALGLSAPPVRRALQAMRDAGLVH-WRGNG 446 >gi|239943419|ref|ZP_04695356.1| ArsR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989872|ref|ZP_04710536.1| ArsR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446889|ref|ZP_06586279.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291349836|gb|EFE76740.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 125 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRP 69 P R+ +A IS + K L+ L +AG+ RGR L RP Sbjct: 22 GPARVVDLAARHPISRPAVSKHLRVLTEAGLATVEDRGRERHYALARP 69 >gi|229528090|ref|ZP_04417481.1| 3-methyladenine DNA glycosylase [Vibrio cholerae 12129(1)] gi|229334452|gb|EEN99937.1| 3-methyladenine DNA glycosylase [Vibrio cholerae 12129(1)] Length = 452 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|167462325|ref|ZP_02327414.1| BirA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381851|ref|ZP_08055805.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154239|gb|EFX46561.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 326 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70 R+L + Q++ +S ++K +Q + + G E R + G +L Sbjct: 4 RILAMFEQNPGEYLSGEQLSRELGVSRTAIWKHIQAMKQQGYRFEASRRK--GYKLLEEP 61 Query: 71 D 71 + Sbjct: 62 E 62 >gi|187922218|ref|YP_001893860.1| ArsR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713412|gb|ACD14636.1| transcriptional regulator, ArsR family [Burkholderia phytofirmans PsJN] Length = 110 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 7 TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60 + I R L+ + +IA+ +S L L+ L AG+V + +GR Sbjct: 17 SRLAIFRALV---VAGPEGMPAGEIAQQLGLSPSGLSFHLKDLSHAGLVNSEQKGR 69 >gi|254224704|ref|ZP_04918320.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae V51] gi|125622767|gb|EAZ51085.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae V51] Length = 452 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|148654762|ref|YP_001274967.1| CRP/FNR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566872|gb|ABQ89017.1| transcriptional regulator, Crp/Fnr family [Roseiflexus sp. RS-1] Length = 228 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 10/58 (17%) Query: 12 RVLMYCAIHNDYPNRI----------SQIAEACCISELFLFKILQPLVKAGIVETVRG 59 L+ A P +A+ +S + ++L + G+V++ RG Sbjct: 151 HTLIRLADQYGAPTGAPGQVKIPLMQRDLADLIGVSHYTVNRLLHLWQQQGLVKSRRG 208 >gi|16330450|ref|NP_441178.1| hypothetical protein sll1961 [Synechocystis sp. PCC 6803] gi|1652940|dbj|BAA17858.1| sll1961 [Synechocystis sp. PCC 6803] Length = 388 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 20 HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H + Q+A + + K+ Q L AG+VE++ G Sbjct: 77 HPGHRLPSTRQLAMMTGLHRNTISKVYQNLEDAGLVESIAGSG 119 >gi|84386101|ref|ZP_00989130.1| transcriptional regulator, MarR family [Vibrio splendidus 12B01] gi|84378871|gb|EAP95725.1| transcriptional regulator, MarR family [Vibrio splendidus 12B01] Length = 160 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 2 HLTKRTDYGIR----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 L+K +YG+ +LM AI I +++ +S+ I+ L G V+ V Sbjct: 24 KLSK--EYGLTGPQLILMR-AIQEMGNVTIKELSNQTNVSQATTTTIIDRLELNGYVQRV 80 Query: 58 R 58 R Sbjct: 81 R 81 >gi|158314936|ref|YP_001507444.1| IclR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110341|gb|ABW12538.1| transcriptional regulator, IclR family [Frankia sp. EAN1pec] Length = 267 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 +L A H P S ++ + + + + +V ++ R GG +L Sbjct: 21 ILSLLAEHPKRPLGPSDLSRLTGVPKSTVLNLCAAMVDERLL---RRGSGGYQLG 72 >gi|19746208|ref|NP_607344.1| transcriptional regulator [Streptococcus pyogenes MGAS8232] gi|21910451|ref|NP_664719.1| GntR family transcriptional regulator [Streptococcus pyogenes MGAS315] gi|28896026|ref|NP_802376.1| GntR family transcriptional regulator [Streptococcus pyogenes SSI-1] gi|56807523|ref|ZP_00365453.1| COG1725: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] gi|139473653|ref|YP_001128369.1| GntR family transcriptional regulator [Streptococcus pyogenes str. Manfredo] gi|209559543|ref|YP_002286015.1| Transcriptional regulator, GntR family [Streptococcus pyogenes NZ131] gi|19748391|gb|AAL97843.1| putative transcriptional regulator [Streptococcus pyogenes MGAS8232] gi|21904650|gb|AAM79522.1| putative transcriptional regulator (GntR family) [Streptococcus pyogenes MGAS315] gi|28811276|dbj|BAC64209.1| putative transcriptional regulator (GntR family) [Streptococcus pyogenes SSI-1] gi|134271900|emb|CAM30138.1| GntR family regulatory protein [Streptococcus pyogenes str. Manfredo] gi|209540744|gb|ACI61320.1| Transcriptional regulator, GntR family [Streptococcus pyogenes NZ131] Length = 123 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68 >gi|323484313|ref|ZP_08089680.1| GntR family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323694687|ref|ZP_08108849.1| GntR family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323402307|gb|EGA94638.1| GntR family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323501279|gb|EGB17179.1| GntR family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 178 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 N + +A I+ + + L + G + +V+GR Sbjct: 31 QNSQLPSVRSLATELSINPNTIQRAYAELERQGYIYSVKGRG 72 >gi|323135783|ref|ZP_08070866.1| regulatory protein ArsR [Methylocystis sp. ATCC 49242] gi|322398874|gb|EFY01393.1| regulatory protein ArsR [Methylocystis sp. ATCC 49242] Length = 126 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C +H ++++ EA +S+ L + L L +V+T R Sbjct: 27 RLMVLCELHKGE-QSVTKLQEAIGLSQSSLSQHLARLRADDLVKTRR 72 >gi|315426227|dbj|BAJ47870.1| transcriptional regulator, HxlR family [Candidatus Caldiarchaeum subterraneum] gi|315427892|dbj|BAJ49484.1| transcriptional regulator, HxlR family [Candidatus Caldiarchaeum subterraneum] Length = 195 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPADQITILDV 78 D P R + +A++ IS+ L L L+K +V + G L +I ++ Sbjct: 34 DGPRRFADLAKSLGISQKVLAHKLSNLMKHQLVSMDVS------GYILTEKGREI--GEL 85 Query: 79 VK 80 VK Sbjct: 86 VK 87 >gi|256393993|ref|YP_003115557.1| hypothetical protein Caci_4855 [Catenulispora acidiphila DSM 44928] gi|256360219|gb|ACU73716.1| hypothetical protein Caci_4855 [Catenulispora acidiphila DSM 44928] Length = 117 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 VL+ A + R ++AEA I+E I+ LV AG V R Sbjct: 18 HVLVEIARNPQALVR--ELAEASGITERAAAAIVSDLVDAGYVSRER 62 >gi|251782508|ref|YP_002996810.1| GntR family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391137|dbj|BAH81596.1| transcriptional regulator, GntR family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127394|gb|ADX24691.1| Transcriptional regulator, GntR family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 123 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68 >gi|240142059|ref|YP_002966569.1| transcriptional regulator, ArsR family [Methylobacterium extorquens AM1] gi|240012003|gb|ACS43228.1| transcriptional regulator, ArsR family [Methylobacterium extorquens AM1] Length = 120 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R++ +AEA +S L L+ L AG++ + R Sbjct: 20 LRIVRQLVTAGPEGMAAGMLAEAVGVSGTNLSFHLKELSHAGLITSRR 67 >gi|240141731|ref|YP_002966211.1| putative regulatory protein, Crp (cAMP receptor protein) [Methylobacterium extorquens AM1] gi|240011708|gb|ACS42934.1| putative regulatory protein, Crp (cAMP receptor protein) [Methylobacterium extorquens AM1] Length = 253 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 19/32 (59%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVE 55 P + +A+ +S + + ++LQ L + G++E Sbjct: 180 PITQADLADTLGMSCVHINRVLQKLRRDGLIE 211 >gi|237731667|ref|ZP_04562148.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226907206|gb|EEH93124.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 256 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 10/115 (8%) Query: 8 DYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 DY + L++ + + S++A +SE + + L L K G+ + V G Sbjct: 3 DYAAFPEQRQALIFQILQENGRVICSELANRLGVSEHTIRRDLHELSKDGVCKKV---YG 59 Query: 63 GVRLCRP-ADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKAL 115 G + P ++ I + + ++S C C + + + +AL Sbjct: 60 GAVITLPESEDIDVRKSINVAKKSNIAQRCARLVKSGSCIFIDTGSTNLAMAEAL 114 >gi|217969520|ref|YP_002354754.1| transcriptional regulator, IclR family [Thauera sp. MZ1T] gi|217506847|gb|ACK53858.1| transcriptional regulator, IclR family [Thauera sp. MZ1T] Length = 266 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +++L A H D P ++ Q+A + +IL + +G VE R G RL Sbjct: 25 MKLLDVLAEHAD-PVQLKQLAIETGLHPSTAHRILGAMTHSGFVE--RSEAGAYRLG--- 78 Query: 71 DQITILDV 78 I +L++ Sbjct: 79 --IRLLEL 84 >gi|221215723|ref|ZP_03588684.1| transcriptional regulator, ArsR family [Burkholderia multivorans CGD1] gi|221164425|gb|EED96910.1| transcriptional regulator, ArsR family [Burkholderia multivorans CGD1] Length = 116 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 7 TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + I R L+ + +IA+ +S L L+ L AG+V++ + Sbjct: 20 SRLAIFRALVVAGPNG---LAAGEIAQRLGLSPSGLSFHLKDLSHAGLVQSRQ 69 >gi|297197899|ref|ZP_06915296.1| metal-dependent regulatory protein [Streptomyces sviceus ATCC 29083] gi|197717158|gb|EDY61192.1| metal-dependent regulatory protein [Streptomyces sviceus ATCC 29083] Length = 132 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 4/58 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67 IRVL P + + I L + L L ++GIV + R G L Sbjct: 22 IRVLELL---QHGPVPVRDLLADIDIEPSSLSQQLAVLRRSGIVVSTREGSTVSYALA 76 >gi|297618783|ref|YP_003706888.1| phosphate uptake regulator PhoU [Methanococcus voltae A3] gi|297377760|gb|ADI35915.1| phosphate uptake regulator, PhoU [Methanococcus voltae A3] Length = 282 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +D P +IAE +S ++ K+L+PL+ +V+ Sbjct: 18 DDEPETQDEIAEKLDVSRRYVAKLLKPLIDDKVVK 52 >gi|281356861|ref|ZP_06243351.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC BAA-548] gi|281316419|gb|EFB00443.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC BAA-548] Length = 344 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--ADQITI 75 D + + A ++ + K PL +AG ++ RG G L P +QI + Sbjct: 24 APGDRFHSENDAARRFGVTAVTARKAFAPLEQAGYIDRKRG-SGTFVLRLPDRPEQIRL 81 >gi|229543039|ref|ZP_04432099.1| transcriptional regulator, MarR family [Bacillus coagulans 36D1] gi|229327459|gb|EEN93134.1| transcriptional regulator, MarR family [Bacillus coagulans 36D1] Length = 199 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52 +TD L A + +I+E I + +I++ L +AG Sbjct: 28 KTDNAFETLKLLAAEEN--VTAGRISEVLDIKPSSVTQIIKKLEEAG 72 >gi|66045573|ref|YP_235414.1| regulatory proteins, IclR [Pseudomonas syringae pv. syringae B728a] gi|63256280|gb|AAY37376.1| regulatory proteins, IclR [Pseudomonas syringae pv. syringae B728a] Length = 279 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 20/82 (24%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66 +R L C ++ R++Q+A+ +S+ ++L+ L++ G+VE + R RL Sbjct: 26 LRCLGDC---DEGGERVTQLAQRVGLSQPTTHRLLRSLMEEGMVEQDLLSKR-----YRL 77 Query: 67 --------CRPADQITILDVVK 80 + + + DVV+ Sbjct: 78 SIEFFALAAKAGNTGNLRDVVR 99 >gi|21222109|ref|NP_627888.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|256786804|ref|ZP_05525235.1| transcriptional regulator [Streptomyces lividans TK24] gi|289770694|ref|ZP_06530072.1| transcriptional regulator [Streptomyces lividans TK24] gi|5019346|emb|CAB44399.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289700893|gb|EFD68322.1| transcriptional regulator [Streptomyces lividans TK24] Length = 122 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 52 LRLFSSVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 98 >gi|330467425|ref|YP_004405168.1| ArsR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810396|gb|AEB44568.1| ArsR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 117 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 +R+L + +S + E +S+ + L+ L +AG++E RG RL Sbjct: 37 LRLLSLIQSAPEQEASVSDLTEPLGLSQPTVSHHLRILTEAGLLERDKRGVWAYYRLVPS 96 Query: 70 A 70 A Sbjct: 97 A 97 >gi|331696853|ref|YP_004333092.1| iron (metal) dependent repressor, DtxR family [Pseudonocardia dioxanivorans CB1190] gi|326951542|gb|AEA25239.1| iron (metal) dependent repressor, DtxR family [Pseudonocardia dioxanivorans CB1190] Length = 220 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 M + T+ ++VL +D P +S +A ++ + ++++ L G+V R Sbjct: 1 MTESAATENYLKVLWTAGEWSDAPVTVSVLASRLGLAPSSVSEVVRRLTDRGLVAHAR-- 58 Query: 61 RGGVRLCRPADQITILDV 78 G + L +I + V Sbjct: 59 YGTIELTPDGRRIALGTV 76 >gi|329113298|ref|ZP_08242080.1| Hypothetical protein APO_0063 [Acetobacter pomorum DM001] gi|326697376|gb|EGE49035.1| Hypothetical protein APO_0063 [Acetobacter pomorum DM001] Length = 189 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR---LCRPADQITILDV-VKATE 83 +IAEA I + +I++ LVK G + + R + G+R L R + +V +AT+ Sbjct: 109 EEIAEAVGIKADHVSEIMRELVKFGAIFSEREKVAGMRGPGLVRYYMNRHVAEVGSRATQ 168 Query: 84 ESFFVAE 90 E + Sbjct: 169 EELALIP 175 >gi|299537603|ref|ZP_07050896.1| YobV [Lysinibacillus fusiformis ZC1] gi|298726972|gb|EFI67554.1| YobV [Lysinibacillus fusiformis ZC1] Length = 308 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59 M L + + + I+ + ++AE +S +++ ++ L AG+ V + +G Sbjct: 1 MKLER-----LLTMTMILINR-KKVKAQELAELFNVSIRTIYRDIETLSCAGVPVISQQG 54 Query: 60 RRGGVRL 66 GG+ L Sbjct: 55 VNGGISL 61 >gi|297197742|ref|ZP_06915139.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146850|gb|EDY60265.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 268 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + + ++ +S + + + L G+VE RGR GG Sbjct: 54 LPGERLPAERELTALLHVSRPTVREAVARLQALGVVEIRRGRNGG 98 >gi|283835600|ref|ZP_06355341.1| transcriptional regulator, ArsR family [Citrobacter youngae ATCC 29220] gi|291068812|gb|EFE06921.1| transcriptional regulator, ArsR family [Citrobacter youngae ATCC 29220] Length = 99 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+L+ C + ++A A +S + L + + G++++ R Sbjct: 26 RLLILCMLCGSPGTSAGELARATGLSPSATSQHLARMREEGLIDSQR 72 >gi|269138393|ref|YP_003295093.1| DNA-binding transcriptional repressor [Edwardsiella tarda EIB202] gi|267984053|gb|ACY83882.1| DNA-binding transcriptional repressor [Edwardsiella tarda EIB202] gi|304558420|gb|ADM41084.1| Uxu operon transcriptional regulator [Edwardsiella tarda FL6-60] Length = 253 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 + IAE ++ + + L L G+VE RG G L PA ++L Sbjct: 29 RPGERLPPERDIAERLGVTRTVVREALIMLEINGLVEVRRGA-GIFVLEAPAQAESVL 85 >gi|262281394|ref|ZP_06059175.1| L-lactate utilization transcriptional repressor [Acinetobacter calcoaceticus RUH2202] gi|262257220|gb|EEY75957.1| L-lactate utilization transcriptional repressor [Acinetobacter calcoaceticus RUH2202] Length = 250 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 1 MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 M ++ + ++ L+ + D Q+A + +S L + +Q L G++ + Sbjct: 1 MRISDQVVMKLQALIEERHM-RKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLISR 59 Query: 58 RG 59 RG Sbjct: 60 RG 61 >gi|229514422|ref|ZP_04403883.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TMA 21] gi|229348402|gb|EEO13360.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TMA 21] Length = 452 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|284029663|ref|YP_003379594.1| GntR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808956|gb|ADB30795.1| transcriptional regulator, GntR family [Kribbella flavida DSM 17836] Length = 247 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 16/33 (48%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +AEA +S + + + LV G++ RG Sbjct: 44 DLAEAYGLSRPTVRQAIARLVDQGLLVRKRGVG 76 >gi|262201865|ref|YP_003273073.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085212|gb|ACY21180.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247] Length = 99 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66 + +L+ + IA +E + + L+ L G V + R GR RL Sbjct: 29 LEILIVLHRRPG--IIVGDIAATVGRTETAVSQALRVLRHQGWVTSTRVGRSVSYRL 83 >gi|153212155|ref|ZP_01947950.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae 1587] gi|124116707|gb|EAY35527.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae 1587] Length = 452 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|157151495|ref|YP_001451205.1| repressor protein adcR [Streptococcus gordonii str. Challis substr. CH1] gi|30059135|gb|AAO43167.1| putative transcriptional repressor [Streptococcus gordonii str. Challis] gi|157076289|gb|ABV10972.1| repressor protein adcR [Streptococcus gordonii str. Challis substr. CH1] Length = 147 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM A + S +A+ +S+ + K ++ L+ G++ET + Sbjct: 42 HILMLLA---EEMLTNSDLAKKLNVSQAAVTKAVKSLINQGMLETFK 85 >gi|15675238|ref|NP_269412.1| GntR family transcriptional regulator [Streptococcus pyogenes M1 GAS] gi|71910804|ref|YP_282354.1| GntR family transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|13622408|gb|AAK34133.1| putative transcriptional regulator (GntR family) [Streptococcus pyogenes M1 GAS] gi|71853586|gb|AAZ51609.1| transcriptional regulator, GntR family [Streptococcus pyogenes MGAS5005] Length = 123 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 V+M D + + AE ++ + + L + G+V + R Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68 >gi|90422669|ref|YP_531039.1| GntR-like [Rhodopseudomonas palustris BisB18] gi|90104683|gb|ABD86720.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris BisB18] Length = 252 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 ++AE +S + + L+ L + ++ + RG G + RP Sbjct: 50 ELAETYLVSRPIVREALRQLREQRLIYSRRGA-GSFVVARP 89 >gi|330968218|gb|EGH68478.1| IclR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 279 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 17/80 (21%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL-- 66 VL ++ R++Q+A+ +S+ ++L+ L+ G+VE + R RL Sbjct: 25 VLRCLGECDEGGERVTQLAQRVGLSQPTTHRLLRSLMDEGMVEQDLLSKR-----YRLSI 79 Query: 67 ------CRPADQITILDVVK 80 R + + DVV+ Sbjct: 80 EFFALAARAGNTGNLRDVVR 99 >gi|326382378|ref|ZP_08204070.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199108|gb|EGD56290.1| ArsR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 109 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A H+ + I+ A +S+ + L+ L AG++E+ R Sbjct: 38 IASHDGGQACVCDISPAVDVSQPTVSHHLKVLRTAGLLESER 79 >gi|317407663|gb|EFV87600.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 237 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 D ++I+E +S + + L L G++ +G Sbjct: 34 GDKLPSENEISERFGVSRPVVREALLRLRADGLITAHQG 72 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076670|gb|ADJ66069.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + P + ++A+ S + + L L GIV + RG Sbjct: 35 ELGENRKLPTEV-ELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 >gi|326775637|ref|ZP_08234902.1| transcriptional regulator, GntR family with UTRA sensor domain [Streptomyces cf. griseus XylebKG-1] gi|326655970|gb|EGE40816.1| transcriptional regulator, GntR family with UTRA sensor domain [Streptomyces cf. griseus XylebKG-1] Length = 257 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A D + +++ + ++ + K + L G++ + +G+ Sbjct: 26 DLA-PGDQLSSENELKDRFGVTRTTVRKGIALLRAEGLITSKQGKG 70 >gi|296268115|ref|YP_003650747.1| MarR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296090902|gb|ADG86854.1| transcriptional regulator, MarR family [Thermobispora bispora DSM 43833] Length = 169 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L+ A + R+S +A +S + +++ L + G+VE Sbjct: 53 LIRLARSPERRLRMSDLAAQTSMSTSGITRVVDRLEREGLVE 94 >gi|291303171|ref|YP_003514449.1| MarR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572391|gb|ADD45356.1| transcriptional regulator, MarR family [Stackebrandtia nassauensis DSM 44728] Length = 333 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVR 65 R+L+ + P S+IA ++ + + L+ L G+V +GR+ R Sbjct: 268 RILLLL----EEPLATSEIARRLDVTPSAVSQQLRVLHDNGLVARARQGRQVLYR 318 >gi|262191924|ref|ZP_06050092.1| 3-methyladenine DNA glycosylase [Vibrio cholerae CT 5369-93] gi|262032224|gb|EEY50794.1| 3-methyladenine DNA glycosylase [Vibrio cholerae CT 5369-93] Length = 452 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|240103860|ref|YP_002960169.1| Bifunctional biotin operon repressor/biotin--[acetyl CoA carboxylase] (birA) [Thermococcus gammatolerans EJ3] gi|239911414|gb|ACS34305.1| Bifunctional biotin operon repressor/biotin--[acetyl CoA carboxylase] (birA) [Thermococcus gammatolerans EJ3] Length = 244 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 P +++A IS + ++K ++ L G ++R G L + A Sbjct: 25 GPASGTELARKLGISRVAVWKHIKELNSLGY--SIRATGKGYCLEKEAK 71 >gi|262201664|ref|YP_003272872.1| MarR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085011|gb|ACY20979.1| regulatory protein MarR [Gordonia bronchialis DSM 43247] Length = 142 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 23/43 (53%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 VL D+ R+S +A A +S+ L +++ L K G+V+ Sbjct: 46 VLELLWDAEDHKLRMSDLAGAVHLSQSALSRVVARLEKDGLVQ 88 >gi|212703447|ref|ZP_03311575.1| hypothetical protein DESPIG_01491 [Desulfovibrio piger ATCC 29098] gi|212673133|gb|EEB33616.1| hypothetical protein DESPIG_01491 [Desulfovibrio piger ATCC 29098] Length = 223 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQI----T 74 + +AE IS + + L+ LV+ G+V + +G+R VRL ++I + Sbjct: 27 PGQAIKEVALAEHLGISRAPVREALESLVQEGLVTSEPQKGKR--VRL-MSPEEIRNSYS 83 Query: 75 ILDVVKAT 82 + +++AT Sbjct: 84 VGGILEAT 91 >gi|86144738|ref|ZP_01063070.1| transcriptional regulator, MarR family protein [Vibrio sp. MED222] gi|218675846|ref|YP_002394665.1| Transcriptional regulator, MarR family [Vibrio splendidus LGP32] gi|85837637|gb|EAQ55749.1| transcriptional regulator, MarR family protein [Vibrio sp. MED222] gi|218324114|emb|CAV25286.1| Transcriptional regulator, MarR family [Vibrio splendidus LGP32] Length = 160 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 2 HLTKRTDYGIR----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 L+K +YG+ +LM AI I +++ +S+ I+ L G V+ V Sbjct: 24 KLSK--EYGLTGPQLILMR-AIQEMGNVTIKELSNQTNVSQATTTTIIDRLELNGYVQRV 80 Query: 58 R 58 R Sbjct: 81 R 81 >gi|332528791|ref|ZP_08404768.1| regulatory protein, ArsR [Hylemonella gracilis ATCC 19624] gi|332041857|gb|EGI78206.1| regulatory protein, ArsR [Hylemonella gracilis ATCC 19624] Length = 119 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 LM +S++AEAC S + + L L K G+VE RG R+ P Sbjct: 32 LMILNQLRGGEANVSELAEACACSVANVSRHLTLLSKHGLVERDSRGANAYYRIADP 88 >gi|322391696|ref|ZP_08065163.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus peroris ATCC 700780] gi|321145406|gb|EFX40800.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus peroris ATCC 700780] Length = 262 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|304403789|ref|ZP_07385451.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] gi|304346767|gb|EFM12599.1| two component transcriptional regulator, AraC family [Paenibacillus curdlanolyticus YK9] Length = 514 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 15/32 (46%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQP 47 Y A H+ + IA+ +S ++ K+ + Sbjct: 417 YIAEHSQEEISLETIAKRVQLSPHYISKMFKE 448 >gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Query: 13 VLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVETVRGRRGG 63 VL + + S+I E I E+++ + + L +AG++ TVRG G Sbjct: 156 VLEHLVLRAGEVVSKSEILEHVWDFAYEGDPNIVEVYVSTLRRKL-RAGLIRTVRGA--G 212 Query: 64 VRLCRPA 70 RL Sbjct: 213 YRLEASP 219 >gi|326774475|ref|ZP_08233740.1| transcriptional regulator, GntR family with UTRA sensor domain [Streptomyces cf. griseus XylebKG-1] gi|326654808|gb|EGE39654.1| transcriptional regulator, GntR family with UTRA sensor domain [Streptomyces cf. griseus XylebKG-1] Length = 252 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S L + L L++ G++ VRGR Sbjct: 47 ELAQEFGVSRGTLRRALTTLIEEGLLRQVRGRG 79 >gi|296138520|ref|YP_003645763.1| ArsR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026654|gb|ADG77424.1| transcriptional regulator, ArsR family [Tsukamurella paurometabola DSM 20162] Length = 124 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 A D +++IAE +S + K L L A ++ R + RPA Sbjct: 26 ARLADGDATLTEIAEHYDVSIQAVSKHLTVLENARLISRTRRAQ-----ARPA 73 >gi|269955250|ref|YP_003325039.1| MarR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303931|gb|ACZ29481.1| transcriptional regulator, MarR family [Xylanimonas cellulosilytica DSM 15894] Length = 172 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 +Y +++ + + R+S++AE +S L + + + G+VE Sbjct: 42 GEY--HLMVQLSEAPERTLRMSELAEYLALSRSRLTHTVDRMERRGLVE 88 >gi|254390154|ref|ZP_05005374.1| ArsR2 [Streptomyces clavuligerus ATCC 27064] gi|294817144|ref|ZP_06775786.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445964|ref|ZP_08220698.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703861|gb|EDY49673.1| ArsR2 [Streptomyces clavuligerus ATCC 27064] gi|294321959|gb|EFG04094.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 125 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 51 LRLFSAVASHESGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 97 >gi|220921463|ref|YP_002496764.1| GntR domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946069|gb|ACL56461.1| GntR domain protein [Methylobacterium nodulans ORS 2060] Length = 250 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 A + P +++A +S + L+ L + ++ + +G G L R Sbjct: 42 AENQKLP-SENELAARFQVSRPVVRAALERLRRENVIVSRQGA-GSFVLAR 90 >gi|126740295|ref|ZP_01755984.1| putative transcriptional regulator [Roseobacter sp. SK209-2-6] gi|126718750|gb|EBA15463.1| putative transcriptional regulator [Roseobacter sp. SK209-2-6] Length = 102 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + +LM Q+A+ +S + + + L AG+ V GR GG +L Sbjct: 7 LSILMRL--QTRGQKTAEQLAQELEVSLRTIHRDIDQLSYAGVPVNAEPGRNGGYKL 61 >gi|119716444|ref|YP_923409.1| ArsR family transcriptional regulator [Nocardioides sp. JS614] gi|119537105|gb|ABL81722.1| transcriptional regulator, ArsR family [Nocardioides sp. JS614] Length = 111 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 15/94 (15%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR-----GGVR 65 R+LM+ + YP +++A+ ++ + L L G+V V GRR R Sbjct: 26 RILMHLRVAPAYP---AELADDLGVTRQSMSNHLGCLRGCGLVVAVPEGRRTRYELADAR 82 Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDC 99 L + D++ T+ C + + +C Sbjct: 83 LAHALAD--LHDIILVTDPD----ACTETEEQEC 110 >gi|119389993|pdb|2HYF|A Chain A, The Structure Of Apo-Mntr From Bacillus Subtilis, Selenomethionine Derivative gi|119389994|pdb|2HYF|B Chain B, The Structure Of Apo-Mntr From Bacillus Subtilis, Selenomethionine Derivative gi|119389995|pdb|2HYF|C Chain C, The Structure Of Apo-Mntr From Bacillus Subtilis, Selenomethionine Derivative gi|119389996|pdb|2HYF|D Chain D, The Structure Of Apo-Mntr From Bacillus Subtilis, Selenomethionine Derivative Length = 142 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65 +Y I R+S IAEA + + K +Q L K G+V T +G++ G R Sbjct: 13 IYXLIEEKGYARVSDIAEALAVHPSSVTKXVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 Query: 66 L 66 L Sbjct: 73 L 73 >gi|116248832|ref|YP_764673.1| DeoR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253482|emb|CAK11873.1| putative deoR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 254 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 +L A H + ++A +S + + L+ L G + + G GGV R AD Sbjct: 11 HILEELAKHG--RVTVKELAAEFSVSPETVRRDLKQLEMEGHLRCIYG--GGVTPRRDAD 66 Query: 72 Q 72 Q Sbjct: 67 Q 67 >gi|114799323|ref|YP_761088.1| putative histidine utilization repressor [Hyphomonas neptunium ATCC 15444] gi|114739497|gb|ABI77622.1| putative histidine utilization repressor [Hyphomonas neptunium ATCC 15444] Length = 240 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77 + D + ++ E S + + K + L G++ VR +R G + P TILD Sbjct: 27 LKPDDRIPLERELMEIYDCSRMTVNKAVSDLASRGLI--VRRKRAGSFVAHPPSDSTILD 84 Query: 78 V 78 V Sbjct: 85 V 85 >gi|56696318|ref|YP_166675.1| AraC family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678055|gb|AAV94721.1| transcriptional regulator, AraC family [Ruegeria pomeroyi DSS-3] Length = 329 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46 LT R + LM A+ D P +++IAE S L + + Sbjct: 221 KLTARAN----ALMEAAL--DEPLSLAEIAETLGTSPRTLQQQFR 259 >gi|85704207|ref|ZP_01035310.1| transcriptional regulator, GntR family protein [Roseovarius sp. 217] gi|85671527|gb|EAQ26385.1| transcriptional regulator, GntR family protein [Roseovarius sp. 217] Length = 244 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ +++A+ +S + + L+ L ++ T RG GG Sbjct: 31 DERLPSEAELADHFAVSRPTVREALKRLAAQSLIRTQRGAFGG 73 >gi|328951390|ref|YP_004368725.1| biotin/acetyl-CoA-carboxylase ligase [Marinithermus hydrothermalis DSM 14884] gi|328451714|gb|AEB12615.1| biotin/acetyl-CoA-carboxylase ligase [Marinithermus hydrothermalis DSM 14884] Length = 309 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67 ++ +A +S + ++K Q L +AG +E RGR G RL Sbjct: 13 SETYQSGEALARRLGVSRVAVWKQAQALREAGYPIEVARGR--GYRLA 58 >gi|327485986|gb|AEA80392.1| ADA regulatory protein [Vibrio cholerae LMA3894-4] Length = 452 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|328542746|ref|YP_004302855.1| GntR family transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326412492|gb|ADZ69555.1| GntR family transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 258 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A+ +S L + L L + G++ +VRG Sbjct: 56 LAQEFDVSRPVLREALDKLREEGLIYSVRGSG 87 >gi|315426152|dbj|BAJ47796.1| transcriptional regulator, HxlR family [Candidatus Caldiarchaeum subterraneum] Length = 195 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPADQITILDV 78 D P R + +A++ IS+ L L L+K +V + G L +I ++ Sbjct: 34 DGPRRFADLAKSLGISQKVLAHKLSNLMKHQLVSMDVS------GYILTEKGREI--GEL 85 Query: 79 VK 80 VK Sbjct: 86 VK 87 >gi|312863471|ref|ZP_07723709.1| transcriptional regulator, GntR family [Streptococcus vestibularis F0396] gi|311101007|gb|EFQ59212.1| transcriptional regulator, GntR family [Streptococcus vestibularis F0396] Length = 125 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + A+ ++ + + Q L K G+V + R Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68 >gi|302524918|ref|ZP_07277260.1| predicted protein [Streptomyces sp. AA4] gi|302433813|gb|EFL05629.1| predicted protein [Streptomyces sp. AA4] Length = 153 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 LM A D R+ ++A+A +++ +++ L + G+ E Sbjct: 54 ALMSLADRPDGELRMQELADATSLNQSSATRLVGRLERTGLTE 96 >gi|298246854|ref|ZP_06970659.1| transcriptional regulator, AraC family [Ktedonobacter racemifer DSM 44963] gi|297549513|gb|EFH83379.1| transcriptional regulator, AraC family [Ktedonobacter racemifer DSM 44963] Length = 264 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 14/40 (35%) Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 RV+ Y H + IAE S L ++ + Sbjct: 159 RLAYRVMDYLREHIEQDVNSELIAEELGYSYGHLDRVFRQ 198 >gi|289643080|ref|ZP_06475211.1| transcriptional regulator, HxlR family [Frankia symbiont of Datisca glomerata] gi|289507124|gb|EFD28092.1| transcriptional regulator, HxlR family [Frankia symbiont of Datisca glomerata] Length = 123 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 L I D P +A +E L + L+ L +AGI+E G RL Sbjct: 29 HALPVFWILRDGPTAFRSLAARLDATESHLSQRLRELREAGIIEVDE--AGDYRLS 82 >gi|260871082|ref|YP_003237484.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257767438|dbj|BAI38933.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|323176261|gb|EFZ61853.1| FCD domain protein [Escherichia coli 1180] Length = 304 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|271961791|ref|YP_003335987.1| hypothetical protein Sros_0194 [Streptosporangium roseum DSM 43021] gi|270504966|gb|ACZ83244.1| hypothetical protein Sros_0194 [Streptosporangium roseum DSM 43021] Length = 161 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Query: 1 MHLTKRTDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 MHL+ T G+ L+ A R+S +A +S + +++ L + G+V Sbjct: 28 MHLS-FTAVGLSDIDFETLIRLARSPGQRLRMSDLAAQTSLSTSGVTRVVDRLEREGLV 85 >gi|254037369|ref|ZP_04871446.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|300946739|ref|ZP_07160988.1| FCD domain protein [Escherichia coli MS 116-1] gi|300959127|ref|ZP_07171213.1| FCD domain protein [Escherichia coli MS 175-1] gi|226840475|gb|EEH72477.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|300314275|gb|EFJ64059.1| FCD domain protein [Escherichia coli MS 175-1] gi|300453595|gb|EFK17215.1| FCD domain protein [Escherichia coli MS 116-1] Length = 304 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|225027886|ref|ZP_03717078.1| hypothetical protein EUBHAL_02146 [Eubacterium hallii DSM 3353] gi|224954833|gb|EEG36042.1| hypothetical protein EUBHAL_02146 [Eubacterium hallii DSM 3353] Length = 145 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 17/34 (50%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + ++S I+E + + K ++ + K G VE Sbjct: 48 EGKVKVSDISENLGLPRPSVTKTVKDMEKLGFVE 81 >gi|212695696|ref|ZP_03303824.1| hypothetical protein ANHYDRO_00214 [Anaerococcus hydrogenalis DSM 7454] gi|212677369|gb|EEB36976.1| hypothetical protein ANHYDRO_00214 [Anaerococcus hydrogenalis DSM 7454] Length = 97 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67 +R++ P + +IAE +S+ + L+ L +V + R GR L Sbjct: 26 LRIMNVL---FSGPTSVGEIAEVLDMSQSAISHQLKSLKDNNLVSSKRSGRSVYYELA 80 >gi|153802511|ref|ZP_01957097.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae MZO-3] gi|124121928|gb|EAY40671.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae MZO-3] Length = 452 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|33591907|ref|NP_879551.1| transcriptional regulator [Bordetella pertussis Tohama I] gi|33571551|emb|CAE41034.1| probable transcriptional regulator [Bordetella pertussis Tohama I] gi|332381324|gb|AEE66171.1| transcriptional regulator [Bordetella pertussis CS] Length = 271 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 10 GIRVLMYC-AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62 R L A H P + +IAEA + +IL L G VE G RG Sbjct: 29 AARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRG 83 >gi|10956686|ref|NP_044288.1| hypothetical protein pSCL_p4 [Streptomyces clavuligerus ATCC 27064] gi|254393830|ref|ZP_05008941.1| KORA protein [Streptomyces clavuligerus ATCC 27064] gi|326444868|ref|ZP_08219602.1| hypothetical protein SclaA2_27555 [Streptomyces clavuligerus ATCC 27064] gi|48762|emb|CAA38043.1| unnamed protein product [Streptomyces clavuligerus ATCC 27064] gi|197707428|gb|EDY53240.1| KORA protein [Streptomyces clavuligerus ATCC 27064] Length = 248 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 IA+ IS K++ L G+VE V+G Sbjct: 37 RNIAQEWGISRATAQKVITALKAQGLVEAVQGSG 70 >gi|114566313|ref|YP_753467.1| transcriptional repressor of the biotin operon / biotin acetyl-CoA-carboxylase synthetase; RBL03563 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337248|gb|ABI68096.1| transcriptional repressor of the biotin operon / biotin acetyl-CoA-carboxylase synthetase; RBL03563 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 325 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GV 64 R+L ++AE IS + ++K ++ L G + G G G Sbjct: 4 RILGELCQSPGAYVSGKELAEKLGISRVAVWKHIENLKGEGY--AILGVSGKGY 55 >gi|332522722|ref|ZP_08398974.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus porcinus str. Jelinkova 176] gi|332313986|gb|EGJ26971.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus porcinus str. Jelinkova 176] Length = 260 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|323357098|ref|YP_004223494.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273469|dbj|BAJ73614.1| transcriptional regulator [Microbacterium testaceum StLB037] Length = 234 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 GIR+L A P I +A + +++L+ L G+V R G VRL Sbjct: 17 GIRLLEELADAR-TPLSIDDLAARVELHRSVAYRLLRTLEDHGLVT--RDAAGAVRLG 71 >gi|315222677|ref|ZP_07864566.1| transcriptional regulator, GntR family [Streptococcus anginosus F0211] gi|315188363|gb|EFU22089.1| transcriptional regulator, GntR family [Streptococcus anginosus F0211] Length = 121 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 16/40 (40%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + ++A ++ + + L L K G V + R Sbjct: 29 QAGEKLPAVRELAAEAGVNPNTIQRALSDLEKEGFVYSQR 68 >gi|298249530|ref|ZP_06973334.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] gi|297547534|gb|EFH81401.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer DSM 44963] Length = 326 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 ++A +SE + + ++ L AGI V RG GG L Sbjct: 19 LTSRELARRLEVSERTIHRDMEALGVAGIPVVAERGNGGGWGL 61 >gi|326792516|ref|YP_004310337.1| GntR family transcriptional regulator with UTRA sensor domain [Clostridium lentocellum DSM 5427] gi|326543280|gb|ADZ85139.1| transcriptional regulator, GntR family with UTRA sensor domain [Clostridium lentocellum DSM 5427] Length = 245 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 16/28 (57%) Query: 34 CCISELFLFKILQPLVKAGIVETVRGRR 61 S + + + LVKAG V++++G+ Sbjct: 38 YDCSRNTVRRAIAQLVKAGYVQSLQGKG 65 >gi|288919872|ref|ZP_06414195.1| O-methyltransferase family 2 [Frankia sp. EUN1f] gi|288348704|gb|EFC82958.1| O-methyltransferase family 2 [Frankia sp. EUN1f] Length = 361 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 19/89 (21%) Query: 6 RTDY-GIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 T Y + + + D P + ++A ++ L +L LV AG++E Sbjct: 38 YTRYWAVVAALDLGVFEALADGPGGVDELAARTEVAPTRLVVVLDYLVAAGLLEA----- 92 Query: 62 GG---VRLCRPAD-------QITILDVVK 80 GG L A ++++ D+++ Sbjct: 93 GGERRFALTPAARCFLLRDSELSMADMLR 121 >gi|261406655|ref|YP_003242896.1| GntR family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283118|gb|ACX65089.1| transcriptional regulator, GntR family [Paenibacillus sp. Y412MC10] Length = 221 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 R ++ + +++AE+ +S + + Q L G+V T G+ Sbjct: 25 RWIIDGTLQPGEKLLDAELAESLGVSRTPIREAFQLLEVQGLVSTHPGK 73 >gi|271501126|ref|YP_003334151.1| GntR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344681|gb|ACZ77446.1| transcriptional regulator, GntR family [Dickeya dadantii Ech586] Length = 239 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 DY Q+A ++ L + + LV G+V+ RG G + L RP Sbjct: 30 GDYLPSEQQLAARYDVNRHTLRRAVDELVNKGLVQRRRGI-GILVLMRP 77 >gi|222086665|ref|YP_002545199.1| transcriptional regulator protein (repressor of nodulation genes) [Agrobacterium radiobacter K84] gi|221724113|gb|ACM27269.1| transcriptional regulator protein (repressor of nodulation genes) [Agrobacterium radiobacter K84] Length = 105 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 R+++ C++ + +A +S+ L + L L +V+T R Sbjct: 25 RLMILCSLVKGE-VPVGVLANQVGLSQSALSQHLSKLRAQKLVKTRR 70 >gi|295839600|ref|ZP_06826533.1| GntR family transcriptional regulator [Streptomyces sp. SPB74] gi|197696821|gb|EDY43754.1| GntR family transcriptional regulator [Streptomyces sp. SPB74] Length = 258 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++ IS + L K L LV+ G++ + GR Sbjct: 46 RELCAQLGISRVTLRKALHHLVERGVLRSSHGRG 79 >gi|148974202|ref|ZP_01811735.1| transcriptional regulator, MarR family protein [Vibrionales bacterium SWAT-3] gi|145965899|gb|EDK31147.1| transcriptional regulator, MarR family protein [Vibrionales bacterium SWAT-3] Length = 160 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 2 HLTKRTDYGIR----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 L+K +YG+ +LM AI I +++ +S+ I+ L G V+ + Sbjct: 24 KLSK--EYGLTGPQLILMR-AIQEMGNVTIKELSNHTNVSQATTTTIIDRLEVNGYVQRI 80 Query: 58 R 58 R Sbjct: 81 R 81 >gi|146318005|ref|YP_001197717.1| CodY family transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320188|ref|YP_001199899.1| transcriptional repressor CodY [Streptococcus suis 98HAH33] gi|253751217|ref|YP_003024358.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis SC84] gi|253753118|ref|YP_003026258.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis P1/7] gi|253754940|ref|YP_003028080.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis BM407] gi|145688811|gb|ABP89317.1| Pleiotropic transcriptional repressor [Streptococcus suis 05ZYH33] gi|145690994|gb|ABP91499.1| Pleiotropic transcriptional repressor [Streptococcus suis 98HAH33] gi|251815506|emb|CAZ51085.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis SC84] gi|251817404|emb|CAZ55141.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis BM407] gi|251819363|emb|CAR44761.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus suis P1/7] gi|292557781|gb|ADE30782.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus suis GZ1] gi|319757491|gb|ADV69433.1| transcriptional repressor CodY [Streptococcus suis JS14] Length = 262 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|156740325|ref|YP_001430454.1| transcriptional regulator TrmB [Roseiflexus castenholzii DSM 13941] gi|156231653|gb|ABU56436.1| transcriptional regulator, TrmB [Roseiflexus castenholzii DSM 13941] Length = 209 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-G-----VR 65 ++L Y H + I + E IS + + L L G++ T + R G G Sbjct: 14 KILTYLRRHGEA--TIKDLEELLGISTTAVREHLAHLEAKGLLTTRQARGGPGRPRLVYS 71 Query: 66 LCRPADQ 72 L A+ Sbjct: 72 LTPRAED 78 >gi|53803557|ref|YP_114590.1| LexA repressor [Methylococcus capsulatus str. Bath] gi|71658816|sp|Q605V8|LEXA_METCA RecName: Full=LexA repressor gi|53757318|gb|AAU91609.1| LexA repressor [Methylococcus capsulatus str. Bath] Length = 202 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 20 HNDYPNRISQIAEACCISELF-LFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 + +P I++IA A +S + + L+ L + G++E + G+RL A++ Sbjct: 21 NEGFPPTIAEIARAIGVSSPHGVREQLRALERKGVIELIPSASRGIRLLARAEE 74 >gi|53719314|ref|YP_108300.1| GntR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76809394|ref|YP_333568.1| hypothetical protein BURPS1710b_2173 [Burkholderia pseudomallei 1710b] gi|167719503|ref|ZP_02402739.1| hypothetical protein BpseD_10797 [Burkholderia pseudomallei DM98] gi|167894189|ref|ZP_02481591.1| hypothetical protein Bpse7_10586 [Burkholderia pseudomallei 7894] gi|217421792|ref|ZP_03453296.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 576] gi|237812328|ref|YP_002896779.1| transcriptonal regulator, GntR-family [Burkholderia pseudomallei MSHR346] gi|254179748|ref|ZP_04886347.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 1655] gi|254188856|ref|ZP_04895367.1| transcriptional regulator, GntR family [Burkholderia pseudomallei Pasteur 52237] gi|254259701|ref|ZP_04950755.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 1710a] gi|254297597|ref|ZP_04965050.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 406e] gi|52209728|emb|CAH35694.1| putative GntR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76578847|gb|ABA48322.1| unnamed protein product [Burkholderia pseudomallei 1710b] gi|157807975|gb|EDO85145.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 406e] gi|157936535|gb|EDO92205.1| transcriptional regulator, GntR family [Burkholderia pseudomallei Pasteur 52237] gi|184210288|gb|EDU07331.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 1655] gi|217395534|gb|EEC35552.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 576] gi|237504459|gb|ACQ96777.1| transcriptonal regulator, GntR-family [Burkholderia pseudomallei MSHR346] gi|254218390|gb|EET07774.1| transcriptional regulator, GntR family [Burkholderia pseudomallei 1710a] Length = 222 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 + ++E IS L +I + L K G+++ GV + P+ TILD+ + Sbjct: 29 PGQRLSEAALSENLQISRNTLREIFRILTKEGLLKHE--PNRGVSVAIPSIA-TILDIYR 85 Query: 81 ATEESFFVAECFA 93 + EC A Sbjct: 86 V----RRLIECQA 94 >gi|226947167|ref|YP_002802240.1| transcriptional regualtory protein, GlmR, DeoR family [Azotobacter vinelandii DJ] gi|226722094|gb|ACO81265.1| transcriptional regualtory protein, GlmR, DeoR family [Azotobacter vinelandii DJ] Length = 254 Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 +L A + + ++A SE+ + K L L K G++ R GG Sbjct: 13 ILALLAERGE--VSVDELARRFETSEVTIRKDLAALEKNGLLL---RRYGG 58 >gi|332162801|ref|YP_004299378.1| transcription regulator ArsR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667031|gb|ADZ43675.1| transcription regulator ArsR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858991|emb|CBX69349.1| biofilm growth-associated repressor [Yersinia enterocolitica W22703] Length = 109 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + +S++ EA I + L + L L G+V T R Sbjct: 32 LLLLCQLSQGEKAVSELEEALGIHQPTLSQQLAVLRSDGLVNTRR 76 >gi|320174758|gb|EFW49886.1| Regulator of L-galactonate catabolism YjjM [Shigella dysenteriae CDC 74-1112] Length = 301 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|318080492|ref|ZP_07987824.1| transcriptional regulator [Streptomyces sp. SA3_actF] Length = 379 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +AEA +S + + L L +AG+V + R RG L Sbjct: 324 LAEAHGLSAPEISRHLTVLKRAGLVTSSR--RGRYVL 358 >gi|318061579|ref|ZP_07980300.1| transcriptional regulator [Streptomyces sp. SA3_actG] Length = 380 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66 +AEA +S + + L L +AG+V + R RG L Sbjct: 325 LAEAHGLSAPEISRHLTVLKRAGLVTSSR--RGRYVL 359 >gi|313889631|ref|ZP_07823274.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pseudoporcinus SPIN 20026] gi|313121928|gb|EFR45024.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus pseudoporcinus SPIN 20026] Length = 260 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|312882188|ref|ZP_07741936.1| GntR domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309370150|gb|EFP97654.1| GntR domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 243 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Query: 2 HLTKRTDYG--IRVLMY--CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57 LT + + L+ + +A++ +S + L L + GI+ Sbjct: 17 RLTLKAQIADKLSALIVSQMIKEGEPLPSERDLAKSYNVSRETIRGALSLLSQKGIIAIS 76 Query: 58 RGRR 61 RG++ Sbjct: 77 RGKK 80 >gi|310640535|ref|YP_003945293.1| acetoin transport repressor [Paenibacillus polymyxa SC2] gi|309245485|gb|ADO55052.1| Acetoin transport repressor [Paenibacillus polymyxa SC2] Length = 129 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 13 VLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++MY ++ D + ++ ++ + K + L + G + +V+G+ Sbjct: 23 MIMYGSLQPDEQLPSVRALSAQLTVNPNTIQKAYRELEREGYIYSVQGKG 72 >gi|331681341|ref|ZP_08381978.1| YjjM protein product [Escherichia coli H299] gi|331081562|gb|EGI52723.1| YjjM protein product [Escherichia coli H299] Length = 304 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|299137636|ref|ZP_07030817.1| transcriptional regulator, HxlR family [Acidobacterium sp. MP5ACTX8] gi|298600277|gb|EFI56434.1| transcriptional regulator, HxlR family [Acidobacterium sp. MP5ACTX8] Length = 134 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 V+ A + + + IS+ L K L+ L + G+V Sbjct: 42 VMSVLAEAGEPLRFSRVLEQVEGISQKSLTKTLRQLERDGLVT 84 >gi|262402232|ref|ZP_06078793.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio sp. RC586] gi|262351014|gb|EEZ00147.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio sp. RC586] Length = 253 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L Y + ++E +S + K + L G+V R GG+ L P D Sbjct: 11 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 66 Query: 73 ITI 75 ++ Sbjct: 67 LSF 69 >gi|256389489|ref|YP_003111053.1| ArsR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355715|gb|ACU69212.1| transcriptional regulator, ArsR family [Catenulispora acidiphila DSM 44928] Length = 171 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETVRGRR-GG 63 R+L D P I+Q+AE I S K+ L KAG+V V R+ GG Sbjct: 28 RILRVL---RDKPATITQVAERLGIAKGSSNHHMKV---LAKAGLVAVVETRKVGG 77 >gi|237785657|ref|YP_002906362.1| DtxR family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758569|gb|ACR17819.1| transcriptional regulator, DtxR family [Corynebacterium kroppenstedtii DSM 44385] Length = 224 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 +R + P R IAE S + + + + + G++ R + L Sbjct: 12 LRTIYELDEEGITPLRAR-IAERLEQSGPTVSQTVARMERDGLLRVAEDRH--LELTDAG 68 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCP----LVGSCGLTSVL-RKALNAFFDVLTQY 125 Q+ I A +AEC S + P +C V+ +DVL Sbjct: 69 RQVAI-----AVMRKHRLAECLLSTTLKLPKEKVHEEACRWEHVMSDDVERRLYDVLDAP 123 Query: 126 S 126 + Sbjct: 124 T 124 >gi|229522542|ref|ZP_04411958.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TM 11079-80] gi|229340527|gb|EEO05533.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TM 11079-80] Length = 452 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|221212634|ref|ZP_03585611.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] gi|221167733|gb|EEE00203.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD1] Length = 273 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66 + VL A P +SQ+A I + L ++++ L G V RG G+ L Sbjct: 21 ALAVLEALAS-GGQPYTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIAL 79 Query: 67 CRPADQ 72 A Q Sbjct: 80 GPRAAQ 85 >gi|218681420|ref|ZP_03529317.1| transcriptional regulator, AraC family protein [Rhizobium etli CIAT 894] Length = 143 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69 R + + H + + +I+EA +S L ++ G+V ++ G G RL R Sbjct: 6 RAIWFIESHFESDLSLEEISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59 >gi|182433937|ref|YP_001821656.1| GntR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462453|dbj|BAG16973.1| putative GntR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 252 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++A+ +S L + L L++ G++ VRGR Sbjct: 47 ELAQEFGVSRGTLRRALTTLIEEGLLRQVRGRG 79 >gi|169349721|ref|ZP_02866659.1| hypothetical protein CLOSPI_00459 [Clostridium spiroforme DSM 1552] gi|169293796|gb|EDS75929.1| hypothetical protein CLOSPI_00459 [Clostridium spiroforme DSM 1552] Length = 121 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 5/45 (11%), Positives = 18/45 (40%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + + +++ I+ + K + L + G + ++ G+ Sbjct: 27 LMQPEEKLPSVRELSSDMHINPNTVVKAYRILEQQGFIYSIPGKG 71 >gi|153824724|ref|ZP_01977391.1| ada regulatory protein [Vibrio cholerae MZO-2] gi|149741680|gb|EDM55709.1| ada regulatory protein [Vibrio cholerae MZO-2] Length = 452 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|147672093|ref|YP_001215063.1| Ada family transcriptional regulator [Vibrio cholerae O395] gi|262168852|ref|ZP_06036546.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC27] gi|146314476|gb|ABQ19016.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae O395] gi|227015663|gb|ACP11872.1| ada regulatory protein [Vibrio cholerae O395] gi|262022551|gb|EEY41258.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC27] Length = 452 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|145297941|ref|YP_001140782.1| carbohydrate kinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850713|gb|ABO89034.1| carbohydrate kinase, PfkB family [Aeromonas salmonicida subsp. salmonicida A449] Length = 363 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 + D ++A+ IS L + L++ G V+ G L + I Sbjct: 12 LRQDPMIAQQELADRLGISRSALASHISSLMRQGYVQGR-----GYVLREGPYAVVIG 64 >gi|157156458|ref|YP_001465875.1| GntR family transcriptional regulator [Escherichia coli E24377A] gi|168749483|ref|ZP_02774505.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4113] gi|168754926|ref|ZP_02779933.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4401] gi|168760603|ref|ZP_02785610.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4501] gi|168766637|ref|ZP_02791644.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4486] gi|168773933|ref|ZP_02798940.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4196] gi|168781645|ref|ZP_02806652.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4076] gi|168797928|ref|ZP_02822935.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC508] gi|170683487|ref|YP_001746812.1| GntR family transcriptional regulator [Escherichia coli SMS-3-5] gi|191168965|ref|ZP_03030733.1| transcriptional regulator, GntR family [Escherichia coli B7A] gi|193063752|ref|ZP_03044840.1| transcriptional regulator, GntR family [Escherichia coli E22] gi|195937630|ref|ZP_03083012.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. EC4024] gi|208807682|ref|ZP_03250019.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4206] gi|208813022|ref|ZP_03254351.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4045] gi|208821317|ref|ZP_03261637.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4042] gi|209398199|ref|YP_002273879.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4115] gi|209921824|ref|YP_002295908.1| hypothetical protein ECSE_4633 [Escherichia coli SE11] gi|217324989|ref|ZP_03441073.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. TW14588] gi|218556893|ref|YP_002389807.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218698195|ref|YP_002405862.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218708036|ref|YP_002415555.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|237704095|ref|ZP_04534576.1| transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|254796354|ref|YP_003081191.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|256025277|ref|ZP_05439142.1| predicted DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|261226715|ref|ZP_05940996.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261256901|ref|ZP_05949434.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291285737|ref|YP_003502555.1| transcriptional regulator, GntR family [Escherichia coli O55:H7 str. CB9615] gi|293403027|ref|ZP_06647124.1| transcriptional regulator [Escherichia coli FVEC1412] gi|293408043|ref|ZP_06651883.1| conserved hypothetical protein [Escherichia coli B354] gi|293417831|ref|ZP_06660453.1| yjjM protein [Escherichia coli B185] gi|293476622|ref|ZP_06665030.1| yjjM protein [Escherichia coli B088] gi|298378555|ref|ZP_06988439.1| yjjM protein [Escherichia coli FVEC1302] gi|300823811|ref|ZP_07103936.1| FCD domain protein [Escherichia coli MS 119-7] gi|300899315|ref|ZP_07117581.1| FCD domain protein [Escherichia coli MS 198-1] gi|300905342|ref|ZP_07123113.1| FCD domain protein [Escherichia coli MS 84-1] gi|300926406|ref|ZP_07142202.1| FCD domain protein [Escherichia coli MS 182-1] gi|300932034|ref|ZP_07147329.1| FCD domain protein [Escherichia coli MS 187-1] gi|300939342|ref|ZP_07154010.1| FCD domain protein [Escherichia coli MS 21-1] gi|301021398|ref|ZP_07185424.1| FCD domain protein [Escherichia coli MS 69-1] gi|301022260|ref|ZP_07186158.1| FCD domain protein [Escherichia coli MS 196-1] gi|301303457|ref|ZP_07209580.1| FCD domain protein [Escherichia coli MS 124-1] gi|301330296|ref|ZP_07222948.1| FCD domain protein [Escherichia coli MS 78-1] gi|301646874|ref|ZP_07246720.1| FCD domain protein [Escherichia coli MS 146-1] gi|307136557|ref|ZP_07495913.1| transcriptional regulator, GntR family protein [Escherichia coli H736] gi|307313707|ref|ZP_07593326.1| transcriptional regulator, GntR family [Escherichia coli W] gi|309795633|ref|ZP_07690049.1| FCD domain protein [Escherichia coli MS 145-7] gi|312966071|ref|ZP_07780297.1| FCD domain protein [Escherichia coli 2362-75] gi|331640398|ref|ZP_08341546.1| YjjM protein product [Escherichia coli H736] gi|331650843|ref|ZP_08351871.1| YjjM protein product [Escherichia coli M718] gi|331666026|ref|ZP_08366920.1| YjjM protein product [Escherichia coli TA143] gi|331671480|ref|ZP_08372278.1| YjjM protein product [Escherichia coli TA280] gi|331680468|ref|ZP_08381127.1| YjjM protein product [Escherichia coli H591] gi|157078488|gb|ABV18196.1| transcriptional regulator, GntR family [Escherichia coli E24377A] gi|170521205|gb|ACB19383.1| transcriptional regulator, GntR family [Escherichia coli SMS-3-5] gi|187770289|gb|EDU34133.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4196] gi|188016181|gb|EDU54303.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4113] gi|189000658|gb|EDU69644.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4076] gi|189357890|gb|EDU76309.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4401] gi|189364129|gb|EDU82548.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4486] gi|189368887|gb|EDU87303.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4501] gi|189379529|gb|EDU97945.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC508] gi|190901012|gb|EDV60793.1| transcriptional regulator, GntR family [Escherichia coli B7A] gi|192930739|gb|EDV83345.1| transcriptional regulator, GntR family [Escherichia coli E22] gi|208727483|gb|EDZ77084.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4206] gi|208734299|gb|EDZ82986.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4045] gi|208741440|gb|EDZ89122.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4042] gi|209159599|gb|ACI37032.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC4115] gi|209915083|dbj|BAG80157.1| conserved hypothetical protein [Escherichia coli SE11] gi|217321210|gb|EEC29634.1| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. TW14588] gi|218354927|emb|CAV02140.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218363662|emb|CAR01320.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218435133|emb|CAR16091.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|226902007|gb|EEH88266.1| transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|254595754|gb|ACT75115.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|281181501|dbj|BAI57831.1| conserved hypothetical protein [Escherichia coli SE15] gi|284924537|emb|CBG37676.1| GntR-family transcriptional regulator [Escherichia coli 042] gi|290765610|gb|ADD59571.1| transcriptional regulator, GntR family [Escherichia coli O55:H7 str. CB9615] gi|291321075|gb|EFE60517.1| yjjM protein [Escherichia coli B088] gi|291429942|gb|EFF02956.1| transcriptional regulator [Escherichia coli FVEC1412] gi|291430549|gb|EFF03547.1| yjjM protein [Escherichia coli B185] gi|291472294|gb|EFF14776.1| conserved hypothetical protein [Escherichia coli B354] gi|298280889|gb|EFI22390.1| yjjM protein [Escherichia coli FVEC1302] gi|299881310|gb|EFI89521.1| FCD domain protein [Escherichia coli MS 196-1] gi|300357094|gb|EFJ72964.1| FCD domain protein [Escherichia coli MS 198-1] gi|300398139|gb|EFJ81677.1| FCD domain protein [Escherichia coli MS 69-1] gi|300402830|gb|EFJ86368.1| FCD domain protein [Escherichia coli MS 84-1] gi|300417513|gb|EFK00824.1| FCD domain protein [Escherichia coli MS 182-1] gi|300455746|gb|EFK19239.1| FCD domain protein [Escherichia coli MS 21-1] gi|300460179|gb|EFK23672.1| FCD domain protein [Escherichia coli MS 187-1] gi|300523723|gb|EFK44792.1| FCD domain protein [Escherichia coli MS 119-7] gi|300841184|gb|EFK68944.1| FCD domain protein [Escherichia coli MS 124-1] gi|300843718|gb|EFK71478.1| FCD domain protein [Escherichia coli MS 78-1] gi|301074927|gb|EFK89733.1| FCD domain protein [Escherichia coli MS 146-1] gi|306906530|gb|EFN37043.1| transcriptional regulator, GntR family [Escherichia coli W] gi|308120757|gb|EFO58019.1| FCD domain protein [Escherichia coli MS 145-7] gi|309704817|emb|CBJ04168.1| GntR-family transcriptional regulator [Escherichia coli ETEC H10407] gi|312289314|gb|EFR17208.1| FCD domain protein [Escherichia coli 2362-75] gi|315063661|gb|ADT77988.1| L-galactonate gene regulator [Escherichia coli W] gi|315255785|gb|EFU35753.1| FCD domain protein [Escherichia coli MS 85-1] gi|315284696|gb|EFU44141.1| FCD domain protein [Escherichia coli MS 110-3] gi|315616275|gb|EFU96894.1| FCD domain protein [Escherichia coli 3431] gi|320190524|gb|EFW65174.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli O157:H7 str. EC1212] gi|320200524|gb|EFW75110.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli EC4100B] gi|320638738|gb|EFX08396.1| transcriptional regulator, GntR family protein [Escherichia coli O157:H7 str. G5101] gi|320644450|gb|EFX13515.1| transcriptional regulator, GntR family protein [Escherichia coli O157:H- str. 493-89] gi|320649768|gb|EFX18292.1| transcriptional regulator, GntR family protein [Escherichia coli O157:H- str. H 2687] gi|320654818|gb|EFX22787.1| transcriptional regulator, GntR family protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660670|gb|EFX28131.1| transcriptional regulator, GntR family protein [Escherichia coli O55:H7 str. USDA 5905] gi|320665597|gb|EFX32643.1| transcriptional regulator, GntR family protein [Escherichia coli O157:H7 str. LSU-61] gi|323181898|gb|EFZ67310.1| FCD domain protein [Escherichia coli 1357] gi|323189798|gb|EFZ75076.1| FCD domain protein [Escherichia coli RN587/1] gi|323380258|gb|ADX52526.1| transcriptional regulator, GntR family [Escherichia coli KO11] gi|323945877|gb|EGB41922.1| FCD domain-containing protein [Escherichia coli H120] gi|323955314|gb|EGB51086.1| FCD domain-containing protein [Escherichia coli H263] gi|323965481|gb|EGB60936.1| FCD domain-containing protein [Escherichia coli M863] gi|324016900|gb|EGB86119.1| FCD domain protein [Escherichia coli MS 117-3] gi|324118564|gb|EGC12457.1| FCD domain-containing protein [Escherichia coli E1167] gi|326345327|gb|EGD69070.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli O157:H7 str. 1125] gi|326346819|gb|EGD70553.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli O157:H7 str. 1044] gi|327250289|gb|EGE62008.1| FCD domain protein [Escherichia coli STEC_7v] gi|331040144|gb|EGI12351.1| YjjM protein product [Escherichia coli H736] gi|331051297|gb|EGI23346.1| YjjM protein product [Escherichia coli M718] gi|331057077|gb|EGI29071.1| YjjM protein product [Escherichia coli TA143] gi|331071325|gb|EGI42682.1| YjjM protein product [Escherichia coli TA280] gi|331071931|gb|EGI43267.1| YjjM protein product [Escherichia coli H591] gi|332346404|gb|AEE59738.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 304 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|49176497|ref|YP_026290.1| DNA-binding transcriptional activator for yjjMN; mutants fail to grow on L-galactonate [Escherichia coli str. K-12 substr. MG1655] gi|89111066|ref|AP_004846.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|193070099|ref|ZP_03051045.1| transcriptional regulator, GntR family [Escherichia coli E110019] gi|218561534|ref|YP_002394447.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|238903445|ref|YP_002929241.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|256019989|ref|ZP_05433854.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|312970046|ref|ZP_07784228.1| FCD domain protein [Escherichia coli 1827-70] gi|332281135|ref|ZP_08393548.1| conserved hypothetical protein [Shigella sp. D9] gi|54042332|sp|P39399|YJJM_ECOLI RecName: Full=Probable HTH-type transcriptional regulator YjjM gi|48995005|gb|AAT48248.1| DNA-binding transcriptional activator for yjjMN; mutants fail to grow on L-galactonate [Escherichia coli str. K-12 substr. MG1655] gi|85677097|dbj|BAE78347.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|192956552|gb|EDV87009.1| transcriptional regulator, GntR family [Escherichia coli E110019] gi|218368303|emb|CAR06122.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|238862297|gb|ACR64295.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|260450831|gb|ACX41253.1| transcriptional regulator, GntR family [Escherichia coli DH1] gi|310337544|gb|EFQ02655.1| FCD domain protein [Escherichia coli 1827-70] gi|315138911|dbj|BAJ46070.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|320179343|gb|EFW54301.1| Regulator of L-galactonate catabolism YjjM [Shigella boydii ATCC 9905] gi|323166164|gb|EFZ51942.1| FCD domain protein [Shigella sonnei 53G] gi|323939711|gb|EGB35914.1| FCD domain-containing protein [Escherichia coli E482] gi|323975883|gb|EGB70979.1| FCD domain-containing protein [Escherichia coli TW10509] gi|332103487|gb|EGJ06833.1| conserved hypothetical protein [Shigella sp. D9] Length = 304 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|15601771|ref|NP_233402.1| ada regulatory protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587006|ref|ZP_01676784.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae 2740-80] gi|121726607|ref|ZP_01679843.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae V52] gi|153817633|ref|ZP_01970300.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae NCTC 8457] gi|153823361|ref|ZP_01976028.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae B33] gi|227812583|ref|YP_002812593.1| ada regulatory protein [Vibrio cholerae M66-2] gi|229505849|ref|ZP_04395358.1| 3-methyladenine DNA glycosylase [Vibrio cholerae BX 330286] gi|229510297|ref|ZP_04399777.1| 3-methyladenine DNA glycosylase [Vibrio cholerae B33] gi|229517572|ref|ZP_04407017.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC9] gi|229605382|ref|YP_002876086.1| 3-methyladenine DNA glycosylase [Vibrio cholerae MJ-1236] gi|254850178|ref|ZP_05239528.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746251|ref|ZP_05420198.1| ADA regulatory protein [Vibrio cholera CIRS 101] gi|262158134|ref|ZP_06029252.1| ADA regulatory protein [Vibrio cholerae INDRE 91/1] gi|298499786|ref|ZP_07009592.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9658461|gb|AAF96914.1| ada regulatory protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548741|gb|EAX58788.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae 2740-80] gi|121630913|gb|EAX63293.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae V52] gi|126511789|gb|EAZ74383.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae NCTC 8457] gi|126519134|gb|EAZ76357.1| transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II [Vibrio cholerae B33] gi|227011725|gb|ACP07936.1| ada regulatory protein [Vibrio cholerae M66-2] gi|229345608|gb|EEO10581.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC9] gi|229352742|gb|EEO17682.1| 3-methyladenine DNA glycosylase [Vibrio cholerae B33] gi|229356200|gb|EEO21118.1| 3-methyladenine DNA glycosylase [Vibrio cholerae BX 330286] gi|229371868|gb|ACQ62290.1| 3-methyladenine DNA glycosylase [Vibrio cholerae MJ-1236] gi|254845883|gb|EET24297.1| transcriptional regulator [Vibrio cholerae MO10] gi|255736005|gb|EET91403.1| ADA regulatory protein [Vibrio cholera CIRS 101] gi|262030012|gb|EEY48658.1| ADA regulatory protein [Vibrio cholerae INDRE 91/1] gi|297541767|gb|EFH77818.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 452 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 +R L + + +A IS+ +L ++ Q Sbjct: 91 LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126 >gi|329117679|ref|ZP_08246396.1| transcriptional regulator, GntR family [Streptococcus parauberis NCFD 2020] gi|326908084|gb|EGE54998.1| transcriptional regulator, GntR family [Streptococcus parauberis NCFD 2020] Length = 122 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + + AE ++ + + L + G+V + R Sbjct: 31 GDQLPTVREYAENAGVNPNTMQRAFTELEREGMVYSQR 68 >gi|307302723|ref|ZP_07582479.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307318571|ref|ZP_07598005.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306895911|gb|EFN26663.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306903087|gb|EFN33678.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 312 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL-CRPADQI 73 ++++AE IS + +I AG + ++ GRRG L R ++ Sbjct: 239 VSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEY 289 >gi|281356546|ref|ZP_06243038.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC BAA-548] gi|281317238|gb|EFB01260.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC BAA-548] Length = 302 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 ++L Y H D P+ I +IA +S L ++ + Sbjct: 200 KILRYLDAHLDRPHTIERIAAEFRLSPATLHRLFRK 235 >gi|218752490|ref|ZP_03531286.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 138 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 16/42 (38%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D ++++AE + + L L A +V T R Sbjct: 34 LWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVRTRR 75 >gi|315231001|ref|YP_004071437.1| transcriptional regulator [Thermococcus barophilus MP] gi|315184029|gb|ADT84214.1| transcriptional regulator [Thermococcus barophilus MP] Length = 97 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKI-LQPLVKAGIVETV 57 ++++ A N +++IA + IS L K+ L+ L KAGIV++ Sbjct: 19 LKIVALLAREN-RVMYLNEIANSLGISRA-LAKVHLKKLEKAGIVKSK 64 >gi|194016220|ref|ZP_03054834.1| HTH-type transcriptional regulator LrpC [Bacillus pumilus ATCC 7061] gi|194011693|gb|EDW21261.1| HTH-type transcriptional regulator LrpC [Bacillus pumilus ATCC 7061] Length = 159 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 M +T D + +L D + ++++ +S + + ++ L AGI+E Sbjct: 1 MKIT---DVDVHILNEL--KEDARLSMRELSKRVNLSAPAVAERVRKLEDAGIIE 50 >gi|146305373|ref|YP_001185838.1| ArsR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573574|gb|ABP83106.1| transcriptional regulator, ArsR family [Pseudomonas mendocina ymp] Length = 104 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPAD 71 L+ + +S++ I + L + L L + G+VET R G++ R+ PA Sbjct: 30 LLLLCQLSQGERNVSELETLLGIQQPTLSQQLAVLRREGLVETRRDGKQIFYRISSPAA 88 >gi|56420280|ref|YP_147598.1| trehalose operon transcriptional repressor [Geobacillus kaustophilus HTA426] gi|56380122|dbj|BAD76030.1| transcriptional repressor of trehalose operon (GntR family) [Geobacillus kaustophilus HTA426] Length = 282 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A S + K L L + G ++ ++G+ Sbjct: 71 DKLPSEHELAARYETSRETIRKALHLLSEHGYIQKMKGKG 110 >gi|110635610|ref|YP_675818.1| GntR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286594|gb|ABG64653.1| transcriptional regulator, GntR family [Chelativorans sp. BNC1] Length = 261 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 38/134 (28%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70 D ++A +S + + L+ L +G+V+ +G +GG L Sbjct: 37 RPGDKLPSERELANQLNVSRNAVREALRMLEMSGVVKLQKGAKGGAFIGDGNAEVLATGL 96 Query: 71 DQ----------------ITILDVV------KATEESFFVAE--------CFASHKIDCP 100 I + ++V +ATE + E CFA +D Sbjct: 97 KDLLNLRGLTIEQLTESRIWLAEIVVRVACERATERDLDLLEANIDEAERCFARGDLDGK 156 Query: 101 LVGSCGLTSVLRKA 114 L ++L +A Sbjct: 157 LACQIEFHNILARA 170 >gi|332083703|gb|EGI88921.1| hypothetical protein SD15574_5359 [Shigella dysenteriae 155-74] Length = 146 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|331266725|ref|YP_004326355.1| transcriptional regulator, DeoR family [Streptococcus oralis Uo5] gi|326683397|emb|CBZ01015.1| transcriptional regulator, DeoR family [Streptococcus oralis Uo5] Length = 300 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69 R+L Y + ++A +S +++ ++ L AGI + +V G+ GG+ L + Sbjct: 7 FRIL-YLLLEKGS-TTAPELARLFEVSVRTIYRDIERLSMAGIPLYSVPGKTGGIFLMKD 64 >gi|325279792|ref|YP_004252334.1| transcriptional regulator, Crp/Fnr family [Odoribacter splanchnicus DSM 20712] gi|324311601|gb|ADY32154.1| transcriptional regulator, Crp/Fnr family [Odoribacter splanchnicus DSM 20712] Length = 209 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R+L Y ++ P +IA+ ++ L ++L L G + Sbjct: 153 RLLAYL-REHENPRSRQEIADILGVARPSLARVLSELADEGYLR 195 >gi|320185825|gb|EFW60578.1| Regulator of L-galactonate catabolism YjjM [Shigella flexneri CDC 796-83] gi|332090544|gb|EGI95642.1| FCD domain protein [Shigella boydii 3594-74] Length = 304 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|330944832|ref|XP_003306428.1| hypothetical protein PTT_19570 [Pyrenophora teres f. teres 0-1] gi|311316041|gb|EFQ85452.1| hypothetical protein PTT_19570 [Pyrenophora teres f. teres 0-1] Length = 294 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCI 36 T+Y IR++ + A ++ P + ++AE I Sbjct: 151 TEYAIRIMRWLAF-SERPLSLDELAEVIAI 179 >gi|307294306|ref|ZP_07574150.1| regulatory protein MarR [Sphingobium chlorophenolicum L-1] gi|306880457|gb|EFN11674.1| regulatory protein MarR [Sphingobium chlorophenolicum L-1] Length = 135 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM P+ + +AEA +S+ + + L L G + R Sbjct: 45 ALMLTVYIGAGPHTVRGLAEALNVSKPVITRALNKLSALGYLRRER 90 >gi|300815982|ref|ZP_07096205.1| FCD domain protein [Escherichia coli MS 107-1] gi|331666184|ref|ZP_08367065.1| YjjM protein product [Escherichia coli TA271] gi|300531189|gb|EFK52251.1| FCD domain protein [Escherichia coli MS 107-1] gi|331066395|gb|EGI38272.1| YjjM protein product [Escherichia coli TA271] Length = 304 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|292656538|ref|YP_003536435.1| transcription regulator [Haloferax volcanii DS2] gi|291372108|gb|ADE04335.1| transcription regulator [Haloferax volcanii DS2] Length = 161 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 R ++Y + IA+ S+ + K +Q L G+V+ Sbjct: 11 RAILYALQEDARNMSSGDIAKRTGTSDSTVRKRIQRLESEGVVK 54 >gi|302868261|ref|YP_003836898.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029] gi|315505358|ref|YP_004084245.1| transcriptional regulator, arsr family [Micromonospora sp. L5] gi|302571120|gb|ADL47322.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029] gi|315411977|gb|ADU10094.1| transcriptional regulator, ArsR family [Micromonospora sp. L5] Length = 120 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69 +R+L + +S + +S+ + L+ L +AG++E RG RL Sbjct: 40 LRLLSLIQSAPEGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKRGVWAYYRLV-- 97 Query: 70 ADQIT 74 I+ Sbjct: 98 PSAIS 102 >gi|261407355|ref|YP_003243596.1| AraC family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283818|gb|ACX65789.1| transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10] Length = 778 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47 RV + H D + ++ AE +S +L ++ + Sbjct: 680 RVCGHICRHPDGAHSLADCAELVGVSPSYLSRLFKK 715 >gi|260460875|ref|ZP_05809125.1| ROK family protein [Mesorhizobium opportunistum WSM2075] gi|259033452|gb|EEW34713.1| ROK family protein [Mesorhizobium opportunistum WSM2075] Length = 388 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 24/92 (26%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRR------ 61 R+++ +I + P IA ++ + I++ L + G + ++R GR Sbjct: 17 RIVLE-SIRRNGPIARGDIARHVGLTVQTVSTIVRELEEQGYILSLREEPKGRGLPPATL 75 Query: 62 -----GGVR-------LCRPADQITI-LDVVK 80 GG L A I + DV++ Sbjct: 76 RINPEGGYAVGIHLTPLGIDAALINLSGDVIE 107 >gi|257871084|ref|ZP_05650737.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus gallinarum EG2] gi|257805248|gb|EEV34070.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus gallinarum EG2] Length = 443 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77 + IA+ +SE ++ ++ G+V T++ R G +R L + +++T + Sbjct: 18 GDRISVRGIAKDLGVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76 Query: 78 VVKATEESF 86 VV+ E Sbjct: 77 VVQIIEGEV 85 >gi|258655318|ref|YP_003204474.1| ArsR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558543|gb|ACV81485.1| transcriptional regulator, ArsR family [Nakamurella multipartita DSM 44233] Length = 118 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A + P ++++AE I++ + K +Q L +AG+V R Sbjct: 26 MIARLSRGPATVNELAEPFAITKQAVSKHIQVLEQAGLVTRTR 68 >gi|297561868|ref|YP_003680842.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846316|gb|ADH68336.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 163 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 R++ Y + + +IA+ +S + + ++ L + G VE V Sbjct: 36 RIVGYLLVADREAVSAEEIADGARVSRGSVSQSVRRLREMGFVELVPAPG 85 >gi|225568690|ref|ZP_03777715.1| hypothetical protein CLOHYLEM_04768 [Clostridium hylemonae DSM 15053] gi|225162189|gb|EEG74808.1| hypothetical protein CLOHYLEM_04768 [Clostridium hylemonae DSM 15053] Length = 122 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L ++G+V + R Sbjct: 31 GDKLPSVRDLALDAAVNPNTMQKALSELERSGLVYSQR 68 >gi|251798463|ref|YP_003013194.1| signal transduction protein with CBS and DRTGG domains [Paenibacillus sp. JDR-2] gi|247546089|gb|ACT03108.1| putative signal transduction protein with CBS and DRTGG domains [Paenibacillus sp. JDR-2] Length = 445 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR----PADQITILD 77 + IA+A +SE +K ++ +G+V T R G VR+ R DQ+T + Sbjct: 26 GEKISVRAIAKALGVSEGTAYKAIKEAEASGLVSTKE-RIGTVRIDRRRREALDQLTFGE 84 Query: 78 VVKATEESFF 87 V + E F Sbjct: 85 VAEIVEGHIF 94 >gi|163751427|ref|ZP_02158652.1| transcriptional regulator, DeoR family protein [Shewanella benthica KT99] gi|161328730|gb|EDP99878.1| transcriptional regulator, DeoR family protein [Shewanella benthica KT99] Length = 256 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 ++ D + ++A SE+ + K L L K G++ R GG Sbjct: 17 LNGDGEVSVDELALRFETSEVTIRKDLSALEKTGLLL---RRYGG 58 >gi|152984489|ref|YP_001350811.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959647|gb|ABR81672.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 257 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 17/100 (17%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD-VVKATEESFFV 88 +AE +S L + +Q LV G++ + +G GG + T D ++ E + Sbjct: 40 LAEQFGVSRPSLREAIQKLVAKGLLVSRQG--GGNYVTESLGA-TFSDPLLHLLEGNPDA 96 Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128 + L GSC A++ L S++ Sbjct: 97 QRDLLEFRHT--LEGSC-----------AYYAALRATSLD 123 >gi|323969458|gb|EGB64751.1| FCD domain-containing protein [Escherichia coli TA007] Length = 286 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 14 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 54 >gi|88854311|ref|ZP_01128978.1| putative GntR-family transcriptional regulator [marine actinobacterium PHSC20C1] gi|88816119|gb|EAR25974.1| putative GntR-family transcriptional regulator [marine actinobacterium PHSC20C1] Length = 267 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63 + + +A ++ + + L L G+V T RGR GG Sbjct: 63 RAGERLPSENDLARTFGVAPTTVRESLLALRGRGLVVTRRGRNGG 107 >gi|330974265|gb|EGH74331.1| regulatory protein, IclR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 279 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 20/82 (24%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66 +R L C ++ R++Q+A+ +S+ ++L+ L++ G+VE + R RL Sbjct: 26 LRCLGDC---DEGGERVTQLAQRVGLSQPTTHRLLRSLMEEGMVEQDLLSKR-----YRL 77 Query: 67 --------CRPADQITILDVVK 80 + + + DVV+ Sbjct: 78 SIEFFALAAKAGNTGNLRDVVR 99 >gi|330816096|ref|YP_004359801.1| IclR family regulatory protein [Burkholderia gladioli BSR3] gi|327368489|gb|AEA59845.1| IclR family regulatory protein [Burkholderia gladioli BSR3] Length = 274 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 G+ VL A D P ++ E I + + +I LV AG + Sbjct: 27 GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 70 >gi|328544267|ref|YP_004304376.1| transcriptional regulator, GntR family [polymorphum gilvum SL003B-26A1] gi|326414009|gb|ADZ71072.1| Transcriptional regulator, GntR family [Polymorphum gilvum SL003B-26A1] Length = 232 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61 +A +S L K+L L G++++++G Sbjct: 49 LAAEFGVSRTPLRKVLARLESDGLLQSIQGVG 80 >gi|313901917|ref|ZP_07835335.1| biotin/acetyl-CoA-carboxylase ligase [Thermaerobacter subterraneus DSM 13965] gi|313467812|gb|EFR63308.1| biotin/acetyl-CoA-carboxylase ligase [Thermaerobacter subterraneus DSM 13965] Length = 352 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 RVL P + +AE I+ L+K ++ L + G VE G L Sbjct: 17 RVLAALLAAGGQPVSGATLAEGLGITRAALWKHIEALRRDGWPVEGR--PHQGYTL 70 >gi|282861243|ref|ZP_06270308.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] gi|282563901|gb|EFB69438.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE] Length = 321 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +++AE +S +++ ++ L +G+ V RGR GG+ L Sbjct: 18 LVPATELAERLEVSVRTIYRDVEALSASGVPVYAERGRNGGIAL 61 >gi|256157761|ref|ZP_05455679.1| Bacterial regulatory protein, GntR family [Brucella ceti M490/95/1] gi|256253271|ref|ZP_05458807.1| Bacterial regulatory protein, GntR family [Brucella ceti B1/94] gi|261220387|ref|ZP_05934668.1| GntR domain-containing protein [Brucella ceti B1/94] gi|265996264|ref|ZP_06108821.1| GntR domain-containing protein [Brucella ceti M490/95/1] gi|260918971|gb|EEX85624.1| GntR domain-containing protein [Brucella ceti B1/94] gi|262550561|gb|EEZ06722.1| GntR domain-containing protein [Brucella ceti M490/95/1] Length = 270 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A IS L L+ L AG++ + G Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74 >gi|257057591|ref|YP_003135423.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256587463|gb|ACU98596.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 323 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + L++ + + ++++A+A +S+ + + L L +G+ + T GR GGVRL Sbjct: 6 LVALLF-TLQSRRSATVAELAKALGVSQRTMHRDLAALQASGVPLWTEPGRYGGVRL 61 >gi|226361502|ref|YP_002779280.1| transcriptional regulator CatR [Rhodococcus opacus B4] gi|226239987|dbj|BAH50335.1| putative transcriptional regulator CatR [Rhodococcus opacus B4] Length = 260 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 + A PN ++++A +S + +IL L K G V G G L + Sbjct: 22 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 76 Query: 74 TILD 77 +I Sbjct: 77 SIGQ 80 >gi|261366581|ref|ZP_05979464.1| biotin-[acetyl-CoA-carboxylase] ligase [Subdoligranulum variabile DSM 15176] gi|282571400|gb|EFB76935.1| biotin-[acetyl-CoA-carboxylase] ligase [Subdoligranulum variabile DSM 15176] Length = 332 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 VL ++A+ +S ++K + L G+ +E V R G RLC A Sbjct: 6 VLAALECARGRYLSGQELAQQLGVSRTAVWKAVAALRADGVPIEAVTNR--GYRLCPEA- 62 Query: 72 QITILDVVKAT 82 I D V A Sbjct: 63 DILHGDAVTAL 73 >gi|221196777|ref|ZP_03569824.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] gi|221203446|ref|ZP_03576465.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221177380|gb|EEE09808.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2] gi|221183331|gb|EEE15731.1| transcriptional regulator, IclR family [Burkholderia multivorans CGD2M] Length = 273 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66 + VL A P +SQ+A I + L ++++ L G V RG G+ L Sbjct: 21 ALAVLEALAS-GGQPYTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIAL 79 Query: 67 CRPADQ 72 A Q Sbjct: 80 GPRAAQ 85 >gi|182439304|ref|YP_001827023.1| ArsR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467820|dbj|BAG22340.1| putative ArsR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 132 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69 IRVL ++ + +S++ + L + L L +AG+V R G L P Sbjct: 22 IRVLELL---SEREHAVSEMLNEVGVEAAHLSQQLAVLRRAGLVTARREGSAVHYTLADP 78 Query: 70 ADQITILDVVKA 81 + ++++ Sbjct: 79 G----VAELLRV 86 >gi|148558172|ref|YP_001257230.1| GntR family regulatory protein [Brucella ovis ATCC 25840] gi|148369457|gb|ABQ62329.1| bacterial regulatory protein, GntR family:Bacterial regulatory protein, DeoR family [Brucella ovis ATCC 25840] Length = 270 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A IS L L+ L AG++ + G Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74 >gi|126641135|ref|YP_001084119.1| GntR family transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 191 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 34 CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +S + + + L L G+++T RGR GG +C Sbjct: 1 MGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 39 >gi|172060136|ref|YP_001807788.1| IclR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992653|gb|ACB63572.1| transcriptional regulator, IclR family [Burkholderia ambifaria MC40-6] Length = 230 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +T G+ VL A D P ++ E I + + +I LV AG + Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69 >gi|120601741|ref|YP_966141.1| biotin--acetyl-CoA-carboxylase ligase [Desulfovibrio vulgaris DP4] gi|120561970|gb|ABM27714.1| biotin--acetyl-CoA-carboxylase ligase [Desulfovibrio vulgaris DP4] Length = 330 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCR 68 RVL D +++ +S + K ++ L AG V T RG RL R Sbjct: 12 RVLERL-FEADGWCSGEELSRELGVSRAAVGKHVRALRAAGYVIEAVTRRG----YRLDR 66 Query: 69 PADQITILDVVK--ATE 83 +V++ ATE Sbjct: 67 TTAPFEAAEVLRGLATE 83 >gi|15609777|ref|NP_217156.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|15842181|ref|NP_337218.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31793826|ref|NP_856319.1| ArsR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121638529|ref|YP_978753.1| ArsR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662481|ref|YP_001284004.1| transcription regulator ArsR [Mycobacterium tuberculosis H37Ra] gi|148823833|ref|YP_001288587.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis F11] gi|215404606|ref|ZP_03416787.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215412436|ref|ZP_03421182.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215431597|ref|ZP_03429516.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215446899|ref|ZP_03433651.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis T85] gi|218754381|ref|ZP_03533177.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219558648|ref|ZP_03537724.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis T17] gi|224991023|ref|YP_002645710.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798276|ref|YP_003031277.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis KZN 1435] gi|254232752|ref|ZP_04926079.1| hypothetical protein TBCG_02582 [Mycobacterium tuberculosis C] gi|254365306|ref|ZP_04981351.1| hypothetical transcriptional regulatory protein (probably arsR-family) [Mycobacterium tuberculosis str. Haarlem] gi|254551694|ref|ZP_05142141.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187661|ref|ZP_05765135.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis CPHL_A] gi|260201771|ref|ZP_05769262.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis T46] gi|260205968|ref|ZP_05773459.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis K85] gi|289444182|ref|ZP_06433926.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis T46] gi|289448297|ref|ZP_06438041.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis CPHL_A] gi|289553571|ref|ZP_06442781.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis KZN 605] gi|289570815|ref|ZP_06451042.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis T17] gi|289575355|ref|ZP_06455582.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis K85] gi|289746443|ref|ZP_06505821.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289754759|ref|ZP_06514137.1| transcription regulator ArsR [Mycobacterium tuberculosis EAS054] gi|289758770|ref|ZP_06518148.1| transcription regulator ArsR [Mycobacterium tuberculosis T85] gi|289762814|ref|ZP_06522192.1| transcriptional regulatory protein (probably arsR-family) [Mycobacterium tuberculosis GM 1503] gi|294993083|ref|ZP_06798774.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis 210] gi|297635252|ref|ZP_06953032.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis KZN 4207] gi|297732247|ref|ZP_06961365.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis KZN R506] gi|298526116|ref|ZP_07013525.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776919|ref|ZP_07415256.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu001] gi|306780823|ref|ZP_07419160.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu002] gi|306785447|ref|ZP_07423769.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu003] gi|306790046|ref|ZP_07428368.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu004] gi|306794128|ref|ZP_07432430.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu005] gi|306798544|ref|ZP_07436846.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu006] gi|306804404|ref|ZP_07441072.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu008] gi|306807555|ref|ZP_07444223.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu007] gi|306968694|ref|ZP_07481355.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu009] gi|306973033|ref|ZP_07485694.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu010] gi|307080743|ref|ZP_07489913.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu011] gi|307085332|ref|ZP_07494445.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu012] gi|313659580|ref|ZP_07816460.1| transcriptional regulator, arsR-family protein [Mycobacterium tuberculosis KZN V2475] gi|1550681|emb|CAB02346.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|13882468|gb|AAK47032.1| transcriptional regulator, ArsR family [Mycobacterium tuberculosis CDC1551] gi|31619420|emb|CAD94858.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) [Mycobacterium bovis AF2122/97] gi|121494177|emb|CAL72655.1| Possible transcriptional regulatory protein (probably arsR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601811|gb|EAY60821.1| hypothetical protein TBCG_02582 [Mycobacterium tuberculosis C] gi|134150819|gb|EBA42864.1| hypothetical transcriptional regulatory protein (probably arsR-family) [Mycobacterium tuberculosis str. Haarlem] gi|148506633|gb|ABQ74442.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148722360|gb|ABR06985.1| hypothetical transcriptional regulatory protein, arsR-family [Mycobacterium tuberculosis F11] gi|224774136|dbj|BAH26942.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319779|gb|ACT24382.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis KZN 1435] gi|289417101|gb|EFD14341.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis T46] gi|289421255|gb|EFD18456.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis CPHL_A] gi|289438203|gb|EFD20696.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis KZN 605] gi|289539786|gb|EFD44364.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis K85] gi|289544569|gb|EFD48217.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis T17] gi|289686971|gb|EFD54459.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289695346|gb|EFD62775.1| transcription regulator ArsR [Mycobacterium tuberculosis EAS054] gi|289710320|gb|EFD74336.1| transcriptional regulatory protein (probably arsR-family) [Mycobacterium tuberculosis GM 1503] gi|289714334|gb|EFD78346.1| transcription regulator ArsR [Mycobacterium tuberculosis T85] gi|298495910|gb|EFI31204.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214693|gb|EFO74092.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu001] gi|308326328|gb|EFP15179.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu002] gi|308329871|gb|EFP18722.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu003] gi|308333488|gb|EFP22339.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu004] gi|308337522|gb|EFP26373.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu005] gi|308341189|gb|EFP30040.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu006] gi|308346049|gb|EFP34900.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu007] gi|308348998|gb|EFP37849.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu008] gi|308353723|gb|EFP42574.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu009] gi|308357566|gb|EFP46417.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu010] gi|308361510|gb|EFP50361.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu011] gi|308365123|gb|EFP53974.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis SUMu012] gi|323718754|gb|EGB27913.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326904253|gb|EGE51186.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis W-148] gi|328458048|gb|AEB03471.1| transcriptional regulator, arsR-family [Mycobacterium tuberculosis KZN 4207] Length = 119 Score = 33.8 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 ++++ Y Q+A A +S+ + L L KAG+V + R Sbjct: 45 VKIMSYLFSSPAGEQVSGQLAAALSLSDGTVSHHLAQLRKAGLVISDR 92 >gi|331091309|ref|ZP_08340149.1| hypothetical protein HMPREF9477_00792 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404470|gb|EGG84014.1| hypothetical protein HMPREF9477_00792 [Lachnospiraceae bacterium 2_1_46FAA] Length = 122 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 D + +A ++ + K L L + G+V + R Sbjct: 31 GDKLPSVRDLALEAAVNPNTMQKALSELERQGLVYSQR 68 >gi|302528441|ref|ZP_07280783.1| predicted protein [Streptomyces sp. AA4] gi|302437336|gb|EFL09152.1| predicted protein [Streptomyces sp. AA4] Length = 239 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R M A+ + + ++A A I+ + + L AG V V+ GR VRL P Sbjct: 26 RATMCLALLDGRAWTVGELAAAARIAVSTASEHVTRLADAGFVARVKQGRHAYVRLANP- 84 Query: 71 DQITILDVVKAT 82 + ++++ Sbjct: 85 ---RVAELIEHL 93 >gi|294851132|ref|ZP_06791805.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] gi|294819721|gb|EFG36720.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] Length = 259 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 M A I ++AE +S+ + + LV GI+++ RG Sbjct: 55 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100 >gi|317132646|ref|YP_004091960.1| hypothetical protein Ethha_1702 [Ethanoligenens harbinense YUAN-3] gi|315470625|gb|ADU27229.1| hypothetical protein Ethha_1702 [Ethanoligenens harbinense YUAN-3] Length = 62 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 25 NRISQIAEACCISELFLFKILQP----LVKAGIVETVRGR 60 + ++AE +S+ + +KI+ L + G + TV GR Sbjct: 1 MTVGEVAEELGVSKSYAYKIVHQLNDELKRMGYL-TVSGR 39 >gi|290956868|ref|YP_003488050.1| ArsR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260646394|emb|CBG69490.1| putative ArsR family transcriptional regulator [Streptomyces scabiei 87.22] Length = 121 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +R+ A H + I++ +S+ + L+ L +AG++ + R Sbjct: 48 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLREAGLLSSER 94 >gi|258624591|ref|ZP_05719529.1| Glycerol-3-phosphate regulon repressor [Vibrio mimicus VM603] gi|258583138|gb|EEW07949.1| Glycerol-3-phosphate regulon repressor [Vibrio mimicus VM603] Length = 255 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72 +L Y + ++E +S + K + L G+V R GG+ L P D Sbjct: 13 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 68 Query: 73 ITI 75 ++ Sbjct: 69 LSF 71 >gi|256374625|ref|YP_003098285.1| MarR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918928|gb|ACU34439.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM 43827] Length = 153 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 A+ D P ++AE +S + ++ L +AG V VR Sbjct: 48 LALAGDVPVTAGRMAELSGLSTGAVTGVIDRLERAGYVRRVR 89 >gi|256378220|ref|YP_003101880.1| MarR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922523|gb|ACU38034.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM 43827] Length = 166 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 ++Y +VL + + + +SQ+A++ ++ L +I+ L K G + Sbjct: 43 SHSEY--QVLWWLSTSTEKVLHMSQLADSAGVTASHLSRIVARLEKRGWIT 91 >gi|255505510|ref|ZP_05346554.3| putative transcriptional regulator [Bryantella formatexigens DSM 14469] gi|255267318|gb|EET60523.1| putative transcriptional regulator [Bryantella formatexigens DSM 14469] Length = 327 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64 ++AE +S + + + L +AGI + T +G GG+ Sbjct: 30 QKESVTAPELAEQFEVSRRTISRDIDSLCRAGIPIVTKQGINGGI 74 >gi|217963597|ref|YP_002349275.1| GntR family transcriptional regulator [Listeria monocytogenes HCC23] gi|217332867|gb|ACK38661.1| transcriptional regulator, GntR family [Listeria monocytogenes HCC23] gi|307571827|emb|CAR85006.1| transcriptional regulator, GntR family [Listeria monocytogenes L99] Length = 131 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + I + A ++ + K Q L + ++ TV+G+ Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72 >gi|148251868|ref|YP_001236453.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404041|gb|ABQ32547.1| putative transcriptional regulator with a cAMP-binding domain-like, Crp/Fnr family [Bradyrhizobium sp. BTAi1] Length = 253 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 P Q+A + ++ +++Q GI++T RG Sbjct: 177 PLTHEQLATLLGVGRSYVSRVVQTFRAEGILDTRRGA 213 >gi|145223761|ref|YP_001134439.1| regulatory protein, IclR [Mycobacterium gilvum PYR-GCK] gi|145216247|gb|ABP45651.1| transcriptional regulator, IclR family [Mycobacterium gilvum PYR-GCK] Length = 264 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73 LM +++++ + + ++L+ LV G V + RR L I Sbjct: 28 LMELIGRAGGECSLTELSAESPLPPPTIHRLLRTLVGLGYVRQLPNRR--YALG--PRLI 83 Query: 74 TILDV 78 + +V Sbjct: 84 RLGEV 88 >gi|238026671|ref|YP_002910902.1| IclR family regulatory protein [Burkholderia glumae BGR1] gi|119029701|gb|ABL59968.1| IclR family regulatory protein [Burkholderia glumae BGR1] gi|237875865|gb|ACR28198.1| IclR family regulatory protein [Burkholderia glumae BGR1] Length = 275 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 G+ VL A D P ++ E I + + +I LV AG + Sbjct: 27 GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 70 >gi|119964297|ref|YP_949438.1| MarR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951156|gb|ABM10067.1| putative transcriptional regulator, MarR family [Arthrobacter aurescens TC1] Length = 159 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 L+ DY + + + +S++A S L ++ L K G VE Sbjct: 38 KLSLF-DYNVLAM--LSETEGRYLPMSELAARTSASLSRLSHVVTKLQKRGWVE 88 >gi|6007837|gb|AAF01064.1|AF189258_3 transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 507 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 19 IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG--GVRLCRPA 70 +H +A+ +S + + LV G +E RG G L PA Sbjct: 25 LHPGTRLPSSRALADDLDVSRSVVVEAYGQLVAEGYLEATRGAGTRVGPHLAEPA 79 >gi|90962609|ref|YP_536525.1| ArsR family transcriptional regulator [Lactobacillus salivarius UCC118] gi|90821803|gb|ABE00442.1| Transcriptional regulator, ArsR family [Lactobacillus salivarius UCC118] Length = 116 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGV 64 T Y I L+Y + +S+I +S+ + L+ L + G+V R G+R Sbjct: 39 YTRYKILYLLY-----ERELSVSEITSEIGVSQSAISHQLKLLRQTGLVSGRRDGQRILY 93 Query: 65 RLC 67 L Sbjct: 94 SLA 96 >gi|328544359|ref|YP_004304468.1| ArsR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326414101|gb|ADZ71164.1| ArsR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 118 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L+ + + ++AE + + + L L G+V T R Sbjct: 26 LLLLCHMAERECSVGELAERTGMRMPTVSQQLSLLRAQGLVNTRR 70 >gi|295106713|emb|CBL04256.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 157 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 17/41 (41%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + +A I+ + K LV G +E+ RGR Sbjct: 34 GDQLPTVRGLASEISINYNTVNKAYLSLVSDGYLESTRGRG 74 >gi|317053107|ref|YP_004119461.1| transcriptional regulator, ArsR family [Pantoea sp. At-9b] gi|316953434|gb|ADU72905.1| transcriptional regulator, ArsR family [Pantoea sp. At-9b] Length = 94 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + + H P ++++ I++ +L + L L KA ++ R Sbjct: 24 LHIAFTLSQH---PATVAELEATTRIAQPYLSQHLASLRKAQLLVATR 68 >gi|260847174|ref|YP_003224952.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257762321|dbj|BAI33818.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] Length = 304 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|255016967|ref|ZP_05289093.1| hypothetical protein LmonF_02478 [Listeria monocytogenes FSL F2-515] Length = 91 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 18/43 (41%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + I + A ++ + K Q L + ++ TV+G+ Sbjct: 36 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKG 78 >gi|228476965|ref|ZP_04061603.1| transcriptional regulator, GntR family [Streptococcus salivarius SK126] gi|228250984|gb|EEK10155.1| transcriptional regulator, GntR family [Streptococcus salivarius SK126] Length = 125 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + + A+ ++ + + Q L K G+V + R Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68 >gi|205373103|ref|ZP_03225907.1| manganese transport transcriptional regulator [Bacillus coahuilensis m4-4] Length = 141 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRG 59 +Y I N R+S IAE+ + + K++Q L K + E RG Sbjct: 13 IYLLIENKGYARVSDIAESLSVHPSSVTKMVQKLDKDNYLVYERYRG 59 >gi|254438114|ref|ZP_05051608.1| UbiC transcription regulator-associated domain protein [Octadecabacter antarcticus 307] gi|198253560|gb|EDY77874.1| UbiC transcription regulator-associated domain protein [Octadecabacter antarcticus 307] Length = 250 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 A +D + AE IS + + K + LV G+VE +G Sbjct: 36 DLA-PDDQLPPEREFAEIAQISRVTVRKAVSLLVADGLVEQRQGAG 80 >gi|167750177|ref|ZP_02422304.1| hypothetical protein EUBSIR_01146 [Eubacterium siraeum DSM 15702] gi|167656920|gb|EDS01050.1| hypothetical protein EUBSIR_01146 [Eubacterium siraeum DSM 15702] Length = 249 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59 ++ A++ I++++E +S + + L L G + VRG Sbjct: 7 HSMIIKAVNERASVTIAELSEILNVSASTVKRDLIILANEGKIIKVRG 54 >gi|148380212|ref|YP_001254753.1| MarR family regulatory protein [Clostridium botulinum A str. ATCC 3502] gi|148289696|emb|CAL83801.1| MarR family regulatory protein [Clostridium botulinum A str. ATCC 3502] Length = 141 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 T IR+L Y + + I +A+ S + ++ L+K G+V R Sbjct: 30 THQAIRLLQYIDKNKE--TTIGDLAKHINTSSNTASEHIKRLIKKGLVTKQR 79 >gi|146337420|ref|YP_001202468.1| hypothetical protein BRADO0258 [Bradyrhizobium sp. ORS278] gi|146190226|emb|CAL74218.1| conserved hypothetical protein; putative transcriptional regulator with a cAMP-binding domain-like, Crp/Fnr family [Bradyrhizobium sp. ORS278] Length = 253 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 P Q+A + ++ +++Q GI++T RG Sbjct: 177 PLTHEQLATLLGVGRSYVSRVVQTFRAEGILDTRRGA 213 >gi|108804723|ref|YP_644660.1| GntR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765966|gb|ABG04848.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus DSM 9941] Length = 263 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 9/59 (15%) Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPADQITILDVVKA 81 +A +S L + LQ LV+ G++ V+GR G + L + +T+ +++ A Sbjct: 39 LAAEFGVSRGTLRQALQSLVEEGLLTQVQGRGTFVSAPSGDLPLAQRL--VTMYEILAA 95 >gi|46580961|ref|YP_011769.1| birA bifunctional protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450381|gb|AAS97029.1| birA bifunctional protein [Desulfovibrio vulgaris str. Hildenborough] Length = 330 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCR 68 RVL D +++ +S + K ++ L AG V T RG RL R Sbjct: 12 RVLERL-FEADGWCSGEELSRELGVSRAAVGKHVRALRAAGYVIEAVTRRG----YRLDR 66 Query: 69 PADQITILDVVK--ATE 83 +V++ ATE Sbjct: 67 TTAPFEAAEVLRGLATE 83 >gi|85703925|ref|ZP_01035028.1| Transcriptional Regulator, GntR family protein [Roseovarius sp. 217] gi|85671245|gb|EAQ26103.1| Transcriptional Regulator, GntR family protein [Roseovarius sp. 217] Length = 244 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 21 NDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 D P ++IA+ +S + K + LV G++E +G G L RP+ +T+ Sbjct: 34 PDEPIPSEARIAKEYAVSVGTVRKAVDGLVAEGLLERRQGS--GTYLRRPSFDVTL 87 >gi|170021682|ref|YP_001726636.1| GntR family transcriptional regulator [Escherichia coli ATCC 8739] gi|188492107|ref|ZP_02999377.1| transcriptional regulator, GntR family [Escherichia coli 53638] gi|169756610|gb|ACA79309.1| transcriptional regulator, GntR family [Escherichia coli ATCC 8739] gi|188487306|gb|EDU62409.1| transcriptional regulator, GntR family [Escherichia coli 53638] Length = 304 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71 S +AE IS + IL L + G++ V + R D Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72 >gi|308178697|ref|YP_003918103.1| ArsR family transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307746160|emb|CBT77132.1| putative ArsR-family transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 122 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 4/94 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70 R+L+ YP +++A+A +S + L L GIV GR+ + P Sbjct: 25 RILLSLLHEPGYP---AELAQALGLSRANVSNHLTCLRGCGIVVAKMEGRKTRYEITDPH 81 Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS 104 + +V T C S DC Sbjct: 82 LTTALSALVDVTLAVDDQVPCLDSSCPDCATSAD 115 >gi|297528762|ref|YP_003670037.1| ArsR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252014|gb|ADI25460.1| transcriptional regulator, ArsR family [Geobacillus sp. C56-T3] Length = 106 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 +L A D I+ I+++ IS + K L+ L +AG+V + GR RL Sbjct: 18 MLQLLA---DNELSIAAISKSFPISRTAVNKHLRVLSEAGLVSCRKTGRETRYRLEPEP 73 >gi|239933954|ref|ZP_04690907.1| DeoR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 332 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A ++ + + + L G + TV+G GG RL Sbjct: 25 SGEALAGRLEVTSRTVRRDIDRLRGLGYPITTVKGPDGGYRL 66 >gi|257053108|ref|YP_003130941.1| hypothetical protein Huta_2040 [Halorhabdus utahensis DSM 12940] gi|256691871|gb|ACV12208.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940] Length = 310 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 15 MYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 + A+ D + ISQ+A SE +L + + L + G+V T R Sbjct: 5 IELAVLATVDRGDTISQLATKLDHSESYLSRAVGDLAQNGLVYTER 50 >gi|254380700|ref|ZP_04996066.1| AraC-family transcriptional regulator [Streptomyces sp. Mg1] gi|194339611|gb|EDX20577.1| AraC-family transcriptional regulator [Streptomyces sp. Mg1] Length = 334 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 10 GIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQP 47 +RV+ + + D P + IA A IS +L ++ Q Sbjct: 218 ALRVMAFIRDNADDPLLDVPAIAAAHHISVSYLHRVFQQ 256 >gi|239827288|ref|YP_002949912.1| IclR family transcriptional regulator [Geobacillus sp. WCH70] gi|239807581|gb|ACS24646.1| transcriptional regulator, IclR family [Geobacillus sp. WCH70] Length = 256 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 + + + +++IA+ I++ +++IL L + G +E Sbjct: 13 ALHI-IDIVSSEKDGLGVTEIAKQMDINKSSVYRILSTLAQYGYIE 57 >gi|241206081|ref|YP_002977177.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859971|gb|ACS57638.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 401 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRR 61 RV++ A+ + + +A A +++ + I++ L + G+V + RGR Sbjct: 24 RVMID-ALRINGALSRADLARATRLTKQTVSNIIEELERDGLVSSQEAVRRGRG 76 >gi|163797409|ref|ZP_02191361.1| putative GntR-family transcriptional regulator [alpha proteobacterium BAL199] gi|159177328|gb|EDP61885.1| putative GntR-family transcriptional regulator [alpha proteobacterium BAL199] Length = 241 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D + Q+ +S + + + +Q L + G+V RGR Sbjct: 30 APGDLLPSLEQLMAEFDVSRVTVRQAIQILSQEGLVTPQRGRG 72 >gi|153932778|ref|YP_001384516.1| MarR family transcriptional regulator [Clostridium botulinum A str. ATCC 19397] gi|153936662|ref|YP_001388032.1| MarR family transcriptional regulator [Clostridium botulinum A str. Hall] gi|152928822|gb|ABS34322.1| transcriptional regulator, MarR family [Clostridium botulinum A str. ATCC 19397] gi|152932576|gb|ABS38075.1| transcriptional regulator, MarR family [Clostridium botulinum A str. Hall] Length = 142 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 T IR+L Y + + I +A+ S + ++ L+K G+V R Sbjct: 31 THQAIRLLQYIDKNKE--TTIGDLAKHINTSSNTASEHIKRLIKKGLVTKQR 80 >gi|126728893|ref|ZP_01744708.1| transcriptional regulator, AsnC family protein [Sagittula stellata E-37] gi|126710823|gb|EBA09874.1| transcriptional regulator, AsnC family protein [Sagittula stellata E-37] Length = 151 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 R+L + D + +++A+ ++ L + L+ L + G+++ VRG Sbjct: 8 RILRH--YQADPDSPAAELADRAGVTPSTLARRLERLRETGVLKGVRGV 54 >gi|24380188|ref|NP_722143.1| transcriptional repressor CodY [Streptococcus mutans UA159] gi|290579836|ref|YP_003484228.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|48474284|sp|P59388|CODY_STRMU RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|24378192|gb|AAN59449.1|AE015009_9 putative transcriptional regulator [Streptococcus mutans UA159] gi|254996735|dbj|BAH87336.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 261 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|109898422|ref|YP_661677.1| ArsR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700703|gb|ABG40623.1| transcriptional regulator, ArsR family [Pseudoalteromonas atlantica T6c] Length = 100 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM + N+ +S + + I + L + L L + +V T R Sbjct: 24 HRLMLLCLLNNGEMSVSSLNQQVAIPQSSLSQHLAALRREKLVVTRR 70 >gi|110635305|ref|YP_675513.1| GntR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286289|gb|ABG64348.1| transcriptional regulator, GntR family [Chelativorans sp. BNC1] Length = 242 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 H + +++ + +S + K L+ L K G+VE R Sbjct: 30 AHGERLPSEAELVKQFNVSRQTIHKALRELAKFGLVERNRRAG 72 >gi|69250562|ref|ZP_00605167.1| conserved hypothetical protein [Enterococcus faecium DO] gi|68193929|gb|EAN08502.1| conserved hypothetical protein [Enterococcus faecium DO] Length = 100 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 + + + +IA+ IS +++ ++ L +AGI + + G+ G L Sbjct: 10 ILIQLQSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFL 60 >gi|327489053|gb|EGF20848.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK1058] Length = 262 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|327458860|gb|EGF05208.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK1057] Length = 262 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|322387455|ref|ZP_08061065.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus infantis ATCC 700779] gi|321141984|gb|EFX37479.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus infantis ATCC 700779] Length = 262 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|306845494|ref|ZP_07478064.1| GntR domain-containing protein [Brucella sp. BO1] gi|306274105|gb|EFM55930.1| GntR domain-containing protein [Brucella sp. BO1] Length = 270 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A IS L L+ L AG++ + G Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74 >gi|294811646|ref|ZP_06770289.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294324245|gb|EFG05888.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 475 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 + + E +S + + + L L G+V T G G R RP Sbjct: 24 GEKLPSSRALVERHRVSPVTVSRALAQLTAEGLVVTRPGA-GAYR-ARP 70 >gi|288904302|ref|YP_003429523.1| transcriptional regulator, MarR family [Streptococcus gallolyticus UCN34] gi|306830332|ref|ZP_07463502.1| adc operon repressor AdcR [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977298|ref|YP_004287014.1| HTH-type transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731027|emb|CBI12571.1| putative transcriptional regulator, MarR family [Streptococcus gallolyticus UCN34] gi|304427357|gb|EFM30459.1| adc operon repressor AdcR [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177226|emb|CBZ47270.1| Uncharacterized HTH-type transcriptional regulator yhjH [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 148 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM + S +A+ IS+ + K ++ LV G++ +V+ Sbjct: 41 HILMLLSQ---ERLTNSDLAKRLNISQAAVTKAIKYLVSQGMLASVK 84 >gi|288932075|ref|YP_003436135.1| AsnC family transcriptional regulator [Ferroglobus placidus DSM 10642] gi|288894323|gb|ADC65860.1| putative transcriptional regulator, AsnC family [Ferroglobus placidus DSM 10642] Length = 168 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55 A+ + S++A++ IS L K ++ LVK G++E Sbjct: 12 ALMENSRLSFSELAKSLGISRPTLKKRVEELVKNGVIE 49 >gi|254706272|ref|ZP_05168100.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis M163/99/10] gi|254711435|ref|ZP_05173246.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis B2/94] gi|256029935|ref|ZP_05443549.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis M292/94/1] gi|261313718|ref|ZP_05952915.1| GntR domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261319040|ref|ZP_05958237.1| GntR domain-containing protein [Brucella pinnipedialis B2/94] gi|265986956|ref|ZP_06099513.1| GntR domain-containing protein [Brucella pinnipedialis M292/94/1] gi|261298263|gb|EEY01760.1| GntR domain-containing protein [Brucella pinnipedialis B2/94] gi|261302744|gb|EEY06241.1| GntR domain-containing protein [Brucella pinnipedialis M163/99/10] gi|264659153|gb|EEZ29414.1| GntR domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 270 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A IS L L+ L AG++ + G Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74 >gi|271972133|ref|YP_003344763.1| putative transcriptional regulator, GntR family [Streptosporangium roseum DSM 43021] gi|270513743|gb|ACZ92020.1| putative transcriptional regulator, GntR family [Streptosporangium roseum DSM 43021] Length = 259 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 13/41 (31%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +A +S K + L G++ T G Sbjct: 28 GGKLPAVRDLAARYGVSRNTAAKAVALLKTDGLITTRYGSG 68 >gi|229138331|ref|ZP_04266925.1| Biotin--[acetyl-CoA-carboxylase] synthetase [Bacillus cereus BDRD-ST26] gi|228645096|gb|EEL01334.1| Biotin--[acetyl-CoA-carboxylase] synthetase [Bacillus cereus BDRD-ST26] Length = 317 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78 + I++ S ++K ++ L G +E VR G R+ D++T ++ Sbjct: 8 DGEFVSGQTISDKLGCSRTAVWKHMEDLRNEGYELEAVRRL--GYRIASKPDKVTANEI 64 >gi|227820409|ref|YP_002824380.1| transcriptional regulator protein, ArsR family [Sinorhizobium fredii NGR234] gi|227339408|gb|ACP23627.1| probable transcriptional regulator protein, ArsR family [Sinorhizobium fredii NGR234] Length = 118 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 L++ T ++++ + +AE +S + L+ L +AG++ R Sbjct: 13 LSQETR--LKIIRMLVVAGADGVSAGVMAENLGVSPSNISFHLKELERAGLITQQR 66 >gi|170761728|ref|YP_001787640.1| MarR family transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408717|gb|ACA57128.1| transcriptional regulator, MarR family [Clostridium botulinum A3 str. Loch Maree] Length = 142 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 T IR+L Y + + I +A+ S + ++ L+K G+V R Sbjct: 31 THQAIRLLQYIDKNKE--TTIGDLAKHINTSSNTASEHIKRLIKKGLVTKQR 80 >gi|169631705|ref|YP_001705354.1| IclR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243672|emb|CAM64700.1| Putative transcriptional regulator, IclR family [Mycobacterium abscessus] Length = 286 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54 +R++ A P +S+IA + IS ++ L AG V Sbjct: 12 VRIVEMLAAAM-QPKTVSEIAASTGISRATATAVVNELEAAGWV 54 >gi|182417717|ref|ZP_02949035.1| transcriptional regulator, DeoR family [Clostridium butyricum 5521] gi|237668810|ref|ZP_04528794.1| transcriptional regulator, DeoR family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378441|gb|EDT75972.1| transcriptional regulator, DeoR family [Clostridium butyricum 5521] gi|237657158|gb|EEP54714.1| transcriptional regulator, DeoR family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 254 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68 ++ D + ++E +SE + K LQ L K +++ R G +++ R Sbjct: 13 SLEQDGKIFVKDLSERFNVSESMIRKDLQALEKQNMLK--RTYGGAIQITR 61 >gi|116249450|ref|YP_765291.1| putative nodulation protein NolR [Rhizobium leguminosarum bv. viciae 3841] gi|115254100|emb|CAK12497.1| putative nodulation like protein NolR [Rhizobium leguminosarum bv. viciae 3841] Length = 117 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + +L A + +S +A+ +S+ + L L + +V+T R + Sbjct: 32 LHILHLLA---EGEMSVSVLADEVGLSQSSTSQHLAILREQELVQTRRAAQ 79 >gi|17989411|ref|NP_542044.1| pyruvate dehydrogenase complex repressor [Brucella melitensis bv. 1 str. 16M] gi|225686032|ref|YP_002734004.1| GntR domain-containing protein [Brucella melitensis ATCC 23457] gi|256043096|ref|ZP_05446040.1| GntR domain protein [Brucella melitensis bv. 1 str. Rev.1] gi|256111918|ref|ZP_05452874.1| GntR domain protein [Brucella melitensis bv. 3 str. Ether] gi|256262844|ref|ZP_05465376.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260564323|ref|ZP_05834808.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|265989531|ref|ZP_06102088.1| GntR domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993367|ref|ZP_06105924.1| GntR domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|17985287|gb|AAL54308.1| pyruvate dehydrogenase complex repressor [Brucella melitensis bv. 1 str. 16M] gi|225642137|gb|ACO02050.1| GntR domain protein [Brucella melitensis ATCC 23457] gi|260151966|gb|EEW87059.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|262764237|gb|EEZ10269.1| GntR domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263000200|gb|EEZ12890.1| GntR domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092671|gb|EEZ16887.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] Length = 270 Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A IS L L+ L AG++ + G Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74 >gi|319789943|ref|YP_004151576.1| iron (metal) dependent repressor, DtxR family [Thermovibrio ammonificans HB-1] gi|317114445|gb|ADU96935.1| iron (metal) dependent repressor, DtxR family [Thermovibrio ammonificans HB-1] Length = 145 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%) Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---------ETVRGRRGGVR 65 +Y R+ +IA+A + + ++L+ L K G V T +GR + Sbjct: 18 IYLLESQKRVARVKEIAQARGVKMPTVSEVLKRLSKKGYVLYESYGYVRTTKKGREYAQK 77 Query: 66 LCRPADQ-ITIL-DVVKATEESFFVAECFASHK 96 L R IT L DV+K +E C H Sbjct: 78 LYRKHRALITFLKDVLKLPKEVAEREGCLMEHH 110 >gi|295394383|ref|ZP_06804607.1| probable transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972735|gb|EFG48586.1| probable transcriptional regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 326 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71 ++A +S + + ++ L AG+ V T +GR G + L R A Sbjct: 25 ERMTSKELARRFEVSPRTILRDVEALSAAGVPVFTEQGRNGAIVLDRRAR 74 >gi|294011249|ref|YP_003544709.1| MarR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292674579|dbj|BAI96097.1| MarR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 140 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 LM P+ + +AEA +S+ + + L L G + R Sbjct: 50 ALMLTVYIGAGPHTVRGLAEALNVSKPVITRALNKLSALGYLRRER 95 >gi|291443567|ref|ZP_06582957.1| GntR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291346514|gb|EFE73418.1| GntR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 233 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD--V 78 R ++A+ +S + ++++ L +VE+ R RP + + D V Sbjct: 27 PGSVLRTDELAQRFDVSRTVIREVIRVLESMHLVESRRRVG---VTVRPTETWNVYDPRV 83 Query: 79 VK 80 ++ Sbjct: 84 IR 85 >gi|239943418|ref|ZP_04695355.1| AraC family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989871|ref|ZP_04710535.1| AraC family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446887|ref|ZP_06586277.1| hypothetical protein SSGG_04105 [Streptomyces roseosporus NRRL 15998] gi|291349834|gb|EFE76738.1| hypothetical protein SSGG_04105 [Streptomyces roseosporus NRRL 15998] Length = 319 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG---IVETVRGRRGGVRL 66 +R + +P +++A +S L K LV G + R L Sbjct: 209 ALRAM---HEDPAHPWTTTELAGRAGVSRTTLAKRFTELVGDGPVAYLTEWRMTLAADLL 265 Query: 67 CRPADQITILDVVKAT 82 RP ++T+ V + Sbjct: 266 TRP--ELTVAAVARRV 279 >gi|229113566|ref|ZP_04243014.1| Transcriptional regulator, ArsR [Bacillus cereus Rock1-15] gi|228669865|gb|EEL25260.1| Transcriptional regulator, ArsR [Bacillus cereus Rock1-15] Length = 92 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82 +S++++ ISE + + L+ LV+ IV++ R G RL + I+++V+ Sbjct: 32 GSLSVSELSKLTQISEAVILQHLRKLVQGNIVKSERK---GKRLYCRLEDNKIVEIVRVL 88 >gi|260881544|ref|ZP_05404689.2| transcriptional regulator, GntR family [Mitsuokella multacida DSM 20544] gi|260848737|gb|EEX68744.1| transcriptional regulator, GntR family [Mitsuokella multacida DSM 20544] Length = 237 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 + ++ E +S + + K + LVK G+V RG Sbjct: 23 GEQLALEREMCEQYGVSRITIKKAVDQLVKEGLVVKRRGSG 63 >gi|289937509|ref|YP_003482111.1| transcriptional regulator, IclR family [Natrialba magadii ATCC 43099] gi|289533200|gb|ADD07549.1| transcriptional regulator, IclR family [Natrialba magadii ATCC 43099] Length = 258 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 11/65 (16%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--------- 61 +R++ N +S++A +S+ + K L L + V G+ Sbjct: 20 LRIVEELKHQNGA--TVSELATTVGVSKGTVHKHLATLREHDYVVNDNGKYRIGLHFLDI 77 Query: 62 GGVRL 66 GG L Sbjct: 78 GGYAL 82 >gi|220912600|ref|YP_002487909.1| transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859478|gb|ACL39820.1| putative transcriptional regulator [Arthrobacter chlorophenolicus A6] Length = 271 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 A+ P +++ + + + + L L +AGI+E R R G RPA + + Sbjct: 37 AVLEHGPVSAAELGDMLGFTPAAVRRHLDHLSRAGIIEVKRVARAGAGAGRPARRYVL 94 >gi|297195652|ref|ZP_06913050.1| ArsR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719006|gb|EDY62914.1| ArsR family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 113 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 IRVL D P + + A I L + L L ++GIV R Sbjct: 22 IRVLELL---QDGPMPVRDLLAAIEIEPSSLSQQLAVLRRSGIVRATR 66 >gi|167573095|ref|ZP_02365969.1| transcriptional regulator, ArsR family protein [Burkholderia oklahomensis C6786] Length = 115 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70 R+LM C + +S I I + L + L L +V+T R G+ L Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLAVLRDNALVDTRRDGKNIYYALASQP 91 Query: 71 DQITILDVV 79 I I+ V+ Sbjct: 92 A-IAIMSVL 99 >gi|125717426|ref|YP_001034559.1| CodY family transcriptional regulator [Streptococcus sanguinis SK36] gi|323353269|ref|ZP_08087802.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis VMC66] gi|166218410|sp|A3CLF4|CODY_STRSV RecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY gi|125497343|gb|ABN44009.1| GTP-sensing transcriptional pleiotropic repressor, putative [Streptococcus sanguinis SK36] gi|322121215|gb|EFX92978.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis VMC66] gi|324990755|gb|EGC22691.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK353] gi|324993496|gb|EGC25416.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK405] gi|324995194|gb|EGC27106.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK678] gi|325690287|gb|EGD32291.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK115] gi|325693548|gb|EGD35467.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK150] gi|325696978|gb|EGD38865.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK160] gi|327461768|gb|EGF08099.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK1] gi|328945673|gb|EGG39824.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK1087] gi|332360525|gb|EGJ38335.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK1056] gi|332363356|gb|EGJ41141.1| GTP-sensing transcriptional pleiotropic repressor CodY [Streptococcus sanguinis SK49] Length = 262 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65 N+ S IA+ I+ + L+ L AGI+E+ G +G Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246 >gi|159043802|ref|YP_001532596.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911562|gb|ABV92995.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 287 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 10/84 (11%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITI 75 R S IA A + L L L AG+V + R GR R A+ + Sbjct: 25 LVRRGPSGVRPSDIAAALGLKPNTLSVYLAALQAAGLVASQRAGRAVLYR----AELRRV 80 Query: 76 LDVVKATEESFFVAECFASHKIDC 99 +V + V +C C Sbjct: 81 GALV-----DYLVDDCCRGRPDLC 99 >gi|116253549|ref|YP_769387.1| ROK family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258197|emb|CAK09298.1| putative ROK family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 401 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRR 61 RV++ A+ + + +A A +++ + I++ L + G+V + RGR Sbjct: 24 RVMID-ALRINGALSRADLARATRLTKQTVSNIIEELERDGLVSSQEAVRRGRG 76 >gi|114766315|ref|ZP_01445301.1| transcriptional regulator, GntR family protein [Pelagibaca bermudensis HTCC2601] gi|114541432|gb|EAU44478.1| transcriptional regulator, GntR family protein [Roseovarius sp. HTCC2601] Length = 251 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76 D ++++ ++ + L L + +V + RG GV + I Sbjct: 22 LYRAGDKLPTEAELSSRFGVNRHTARRALADLAERDLVHSRRGA--GVFVKATPLDYPIG 79 Query: 77 DVVK 80 + V+ Sbjct: 80 ERVR 83 >gi|28869718|ref|NP_792337.1| IclR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852960|gb|AAO56032.1| transcriptional regulator, IclR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 279 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 17/80 (21%) Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL-- 66 VL + R++Q+A+ +S+ ++L+ L+ G+VE + R RL Sbjct: 25 VLRCLGECGEGGERVTQLAQRVGLSQPTTHRLLRSLMDEGMVEQDLLSKR-----YRLSI 79 Query: 67 ------CRPADQITILDVVK 80 R + + DVV+ Sbjct: 80 EFFALAARAGNTGNLRDVVR 99 >gi|72162322|ref|YP_289979.1| transcriptional repressor protein [Thermobifida fusca YX] gi|71916054|gb|AAZ55956.1| putative transcriptional repressor protein [Thermobifida fusca YX] Length = 389 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG-GVRLCRPA 70 A+ ++IA A +S + I++ L G+V + GRR V L RP Sbjct: 26 ALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMGVVSVRETSSNGRRARAVTLQRPP 83 >gi|329889027|ref|ZP_08267370.1| bacterial regulatory protein, crp family protein [Brevundimonas diminuta ATCC 11568] gi|328844328|gb|EGF93892.1| bacterial regulatory protein, crp family protein [Brevundimonas diminuta ATCC 11568] Length = 253 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 20/37 (54%) Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60 P +A+ +S + + + LQ L +AG+V+ GR Sbjct: 188 PLTQDMLADILGLSAVHINRTLQQLRRAGLVDYRTGR 224 >gi|325568869|ref|ZP_08145162.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157907|gb|EGC70063.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 236 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE +S + + +Q LV G +E + R Sbjct: 33 ELAEIYGVSRPTIRQAIQALVNEGYLEKRKRRG 65 >gi|311277470|ref|YP_003939701.1| GntR domain-containing protein [Enterobacter cloacae SCF1] gi|308746665|gb|ADO46417.1| GntR domain protein [Enterobacter cloacae SCF1] Length = 258 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 Q+A +S L + L LV G++ + RG Sbjct: 35 RQLAALLGVSRNSLREALAKLVSEGLLVSRRGGG 68 >gi|307543892|ref|YP_003896371.1| GntR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307215916|emb|CBV41186.1| transcriptional regulator, GntR family [Halomonas elongata DSM 2581] Length = 249 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 17/84 (20%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----CRPAD---- 71 D +++ E +S+ + + + L G+VET G GG + R Sbjct: 29 GDRLPGEAELMERLGVSKGTVRESTRVLEAQGLVETRTGPGGGAFVHAMSEARAISLLSH 88 Query: 72 -----QITILDVVK---ATEESFF 87 I+I D+ + A E Sbjct: 89 YLFFQDISIRDIYQIRLALEPELA 112 >gi|307543808|ref|YP_003896287.1| GntR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307215832|emb|CBV41102.1| K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex [Halomonas elongata DSM 2581] Length = 257 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 ++AE +S + + +Q L G++ + +G Sbjct: 38 RELAERFGVSRPSVREAIQKLAARGLLASRQGGG 71 >gi|299138710|ref|ZP_07031888.1| transcriptional regulator, DeoR family [Acidobacterium sp. MP5ACTX8] gi|298599346|gb|EFI55506.1| transcriptional regulator, DeoR family [Acidobacterium sp. MP5ACTX8] Length = 266 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 19/122 (15%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-----LCR 68 ++ I + +S++++ IS + + K L L G+++ GG L Sbjct: 24 MLDL-IQRNGRVLVSELSDVFGISRITIRKDLDYLESKGLLQ---RSHGGALPRSSVLAD 79 Query: 69 PA----DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 P +Q + + + E + + E + C L+ S T+ + +AL AF LT Sbjct: 80 PPLKAKEQHQLKEKQRIAEAAVKLVE-----EGHCVLLDSGTTTTAIARALTAF-SSLTV 133 Query: 125 YS 126 + Sbjct: 134 VT 135 >gi|291442380|ref|ZP_06581770.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345275|gb|EFE72231.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 339 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66 +A ++ + + + L G + TV+G GG RL Sbjct: 32 SGEALAGRLEVTSRTVRRDIDRLRGLGYPITTVKGPDGGYRL 73 >gi|262283762|ref|ZP_06061526.1| repressor protein adcR [Streptococcus sp. 2_1_36FAA] gi|262260608|gb|EEY79310.1| repressor protein adcR [Streptococcus sp. 2_1_36FAA] Length = 147 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58 +LM A + S +A+ +S+ + K ++ L+ G++ET + Sbjct: 42 HILMLLA---EEMLTNSDLAKKLNVSQAAVTKAVKSLINQGMLETFK 85 >gi|255262810|ref|ZP_05342152.1| DeoR family transcriptional regulator [Thalassiobium sp. R2A62] gi|255105145|gb|EET47819.1| DeoR family transcriptional regulator [Thalassiobium sp. R2A62] Length = 267 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67 L+ R S +AE +SE + + ++ L K G+V+ V GGV L Sbjct: 15 LLETLRAQGGSARTSHLAEVLNVSEETIRRTVKALAKTGMVQRV---HGGVYLS 65 >gi|297582737|ref|YP_003698517.1| ROK family protein [Bacillus selenitireducens MLS10] gi|297141194|gb|ADH97951.1| ROK family protein [Bacillus selenitireducens MLS10] Length = 404 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 I P + I++ ++ + I+ L+K G+V+ GR G + R Sbjct: 24 IRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVK--EGRTGASKGGRRP 73 >gi|152980076|ref|YP_001354579.1| heat-inducible transcription repressor [Janthinobacterium sp. Marseille] gi|151280153|gb|ABR88563.1| heat-inducible transcriptional repressor [Janthinobacterium sp. Marseille] Length = 342 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVET 56 M L R ++ L+ I + P ++++ +S + I+ L + G V + Sbjct: 1 MQLDNRAQTLLKALVERYIADGQPVGSRELSKISGLDLSPATIRNIMADLEEMGFVAS 58 >gi|78061330|ref|YP_371238.1| IclR family transcriptional regulator [Burkholderia sp. 383] gi|77969215|gb|ABB10594.1| transcriptional regulator, IclR family [Burkholderia sp. 383] Length = 259 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 R+L + A +S IA ++ + + ++L L A ++E G RL Sbjct: 22 AFRLLRFIA-EGGSTANLSDIARQIDVNRVTVKRLLDSLEAAELIEPHP-SGGSYRLGMS 79 >gi|23499939|ref|NP_699379.1| GntR family transcriptional regulator [Brucella suis 1330] gi|62317124|ref|YP_222977.1| GntR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269111|ref|YP_418402.1| GntR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161620257|ref|YP_001594143.1| GntR domain-containing protein [Brucella canis ATCC 23365] gi|163844366|ref|YP_001622021.1| hypothetical protein BSUIS_B0180 [Brucella suis ATCC 23445] gi|189022387|ref|YP_001932128.1| Bacterial regulatory protein, GntR family [Brucella abortus S19] gi|225628645|ref|ZP_03786679.1| GntR family transcriptional regulator [Brucella ceti str. Cudo] gi|237816687|ref|ZP_04595679.1| GntR family transcriptional regulator [Brucella abortus str. 2308 A] gi|254691389|ref|ZP_05154643.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 6 str. 870] gi|254695311|ref|ZP_05157139.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 3 str. Tulya] gi|254698407|ref|ZP_05160235.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 2 str. 86/8/59] gi|254699473|ref|ZP_05161301.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 5 str. 513] gi|254702596|ref|ZP_05164424.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 3 str. 686] gi|254712035|ref|ZP_05173846.1| Bacterial regulatory protein, GntR family [Brucella ceti M644/93/1] gi|254715104|ref|ZP_05176915.1| Bacterial regulatory protein, GntR family [Brucella ceti M13/05/1] gi|254719915|ref|ZP_05181726.1| Bacterial regulatory protein, GntR family [Brucella sp. 83/13] gi|254731854|ref|ZP_05190432.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 4 str. 292] gi|256014963|ref|YP_003104972.1| transcriptional regulator, GntR family [Brucella microti CCM 4915] gi|256059588|ref|ZP_05449786.1| Bacterial regulatory protein, GntR family [Brucella neotomae 5K33] gi|256256574|ref|ZP_05462110.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 9 str. C68] gi|260544362|ref|ZP_05820183.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260568496|ref|ZP_05838965.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260757002|ref|ZP_05869350.1| GntR domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260759624|ref|ZP_05871972.1| GntR domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762867|ref|ZP_05875199.1| GntR domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882813|ref|ZP_05894427.1| GntR domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261215681|ref|ZP_05929962.1| GntR domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261216812|ref|ZP_05931093.1| GntR domain-containing protein [Brucella ceti M13/05/1] gi|261319679|ref|ZP_05958876.1| GntR domain-containing protein [Brucella ceti M644/93/1] gi|261323555|ref|ZP_05962752.1| GntR domain-containing protein [Brucella neotomae 5K33] gi|261749925|ref|ZP_05993634.1| GntR domain-containing protein [Brucella suis bv. 5 str. 513] gi|261753178|ref|ZP_05996887.1| GntR domain-containing protein [Brucella suis bv. 3 str. 686] gi|265984922|ref|ZP_06097657.1| GntR domain-containing protein [Brucella sp. 83/13] gi|297249931|ref|ZP_06933632.1| GntR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306838502|ref|ZP_07471340.1| GntR domain-containing protein [Brucella sp. NF 2653] gi|23463517|gb|AAN33384.1| transcriptional regulator, GntR family [Brucella suis 1330] gi|62197317|gb|AAX75616.1| transcriptional regulator, GntR family [Brucella abortus bv. 1 str. 9-941] gi|82939385|emb|CAJ12338.1| Bacterial regulatory protein, GntR family:Bacterial regulatory protein, DeoR family [Brucella melitensis biovar Abortus 2308] gi|161337068|gb|ABX63372.1| GntR domain protein [Brucella canis ATCC 23365] gi|163675089|gb|ABY39199.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020961|gb|ACD73682.1| Bacterial regulatory protein, GntR family [Brucella abortus S19] gi|225616491|gb|EEH13539.1| GntR family transcriptional regulator [Brucella ceti str. Cudo] gi|237787500|gb|EEP61716.1| GntR family transcriptional regulator [Brucella abortus str. 2308 A] gi|255997623|gb|ACU49310.1| transcriptional regulator, GntR family [Brucella microti CCM 4915] gi|260097633|gb|EEW81507.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260155161|gb|EEW90242.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260669942|gb|EEX56882.1| GntR domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260673288|gb|EEX60109.1| GntR domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260677110|gb|EEX63931.1| GntR domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260872341|gb|EEX79410.1| GntR domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260917288|gb|EEX84149.1| GntR domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260921901|gb|EEX88469.1| GntR domain-containing protein [Brucella ceti M13/05/1] gi|261292369|gb|EEX95865.1| GntR domain-containing protein [Brucella ceti M644/93/1] gi|261299535|gb|EEY03032.1| GntR domain-containing protein [Brucella neotomae 5K33] gi|261739678|gb|EEY27604.1| GntR domain-containing protein [Brucella suis bv. 5 str. 513] gi|261742931|gb|EEY30857.1| GntR domain-containing protein [Brucella suis bv. 3 str. 686] gi|264663514|gb|EEZ33775.1| GntR domain-containing protein [Brucella sp. 83/13] gi|297173800|gb|EFH33164.1| GntR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306406369|gb|EFM62610.1| GntR domain-containing protein [Brucella sp. NF 2653] Length = 270 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 D ++A IS L L+ L AG++ + G Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74 >gi|46908475|ref|YP_014864.1| GntR family transcriptional regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47093356|ref|ZP_00231124.1| transcriptional regulator, GntR family [Listeria monocytogenes str. 4b H7858] gi|226224849|ref|YP_002758956.1| transcriptional regulator (GntR family) [Listeria monocytogenes Clip81459] gi|254825195|ref|ZP_05230196.1| transcriptional regulator [Listeria monocytogenes FSL J1-194] gi|254853364|ref|ZP_05242712.1| transcriptional regulator [Listeria monocytogenes FSL R2-503] gi|254931646|ref|ZP_05265005.1| transcriptional regulator [Listeria monocytogenes HPB2262] gi|254992051|ref|ZP_05274241.1| transcriptional regulator (GntR family) protein [Listeria monocytogenes FSL J2-064] gi|255520404|ref|ZP_05387641.1| transcriptional regulator (GntR family) protein [Listeria monocytogenes FSL J1-175] gi|300763949|ref|ZP_07073945.1| GntR family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|46881746|gb|AAT05041.1| transcriptional regulator, GntR family [Listeria monocytogenes serotype 4b str. F2365] gi|47018275|gb|EAL09040.1| transcriptional regulator, GntR family [Listeria monocytogenes str. 4b H7858] gi|225877311|emb|CAS06025.1| Putative transcriptional regulator (GntR family) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606729|gb|EEW19337.1| transcriptional regulator [Listeria monocytogenes FSL R2-503] gi|293583201|gb|EFF95233.1| transcriptiona