RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780620|ref|YP_003065033.1| iron-responsive
transcriptional regulator [Candidatus Liberibacter asiaticus str.
psy62]
(144 letters)
>gnl|CDD|32142 COG1959, COG1959, Predicted transcriptional regulator
[Transcription].
Length = 150
Score = 130 bits (327), Expect = 2e-31
Identities = 54/134 (40%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + +Y +R L+Y A+ P ++IAE IS +L KIL L KAG+V++VRG
Sbjct: 1 MKLTSKGEYALRALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL RP ++IT+ DVV+A E + ECF+ +C +CG+ + KAL+AF
Sbjct: 61 KGGGYRLARPPEEITLGDVVRALEGPLALVECFSITNNECN-TPTCGIRAAWLKALDAFL 119
Query: 120 DVLTQYSIECLVRN 133
+VL ++ LV +
Sbjct: 120 EVLDNITLADLVED 133
>gnl|CDD|145313 pfam02082, Rrf2, Transcriptional regulator. This family is
related to pfam001022 and other transcription
regulation families (personal obs: Yeats C).
Length = 82
Score = 101 bits (255), Expect = 7e-23
Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ +TDY + L+Y A+H + P +IAE IS ++L KIL L KAG+V++VRG
Sbjct: 2 LSTKTDYALHALLYLALHPGEGPVTSEEIAERQNISPVYLRKILAKLRKAGLVKSVRGPG 61
Query: 62 GGVRLCRPADQITILDVVKAT 82
GG RL RP ++IT+LDVV+A
Sbjct: 62 GGYRLARPPEEITLLDVVRAV 82
>gnl|CDD|33924 COG4189, COG4189, Predicted transcriptional regulator
[Transcription].
Length = 308
Score = 36.1 bits (83), Expect = 0.003
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCR 68
+RV + +H P +++IAEA + + + ++ L KAG++ T V+ R+G ++C
Sbjct: 24 VRVAILQLLHRKGPLNVNEIAEALGLPQSTMSANIKVLEKAGLIRTETVKARKGSQKICI 83
Query: 69 PADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSV 110
++ TE + D + CGL S
Sbjct: 84 STTDEIEINFPDRTESLDLYIQVAMPLGLYTDFEVEAPCGLCSA 127
>gnl|CDD|38831 KOG3625, KOG3625, KOG3625, Alpha amylase [Carbohydrate transport
and metabolism].
Length = 1521
Score = 28.8 bits (64), Expect = 0.63
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 86 FFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
+ VAE F S +D V G++S++R+A++A+
Sbjct: 559 YVVAELFTGSEDLDNVFVNRLGISSLIREAMSAW 592
>gnl|CDD|28974 cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and
similar prokaryotic, metal regulated homodimeric
repressors. ARSR subfamily of helix-turn-helix
bacterial transcription regulatory proteins (winged
helix topology). Includes several proteins that appear
to dissociate from DNA in the presence of metal ions..
Length = 78
Score = 28.4 bits (63), Expect = 0.70
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
R+ + + P +S++AE +S+ + + L+ L +AG+VE+ R GRR L
Sbjct: 8 TRLRILRLLLEG-PLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTDA 66
Query: 70 ADQITILDVVK 80
+ +L+ +
Sbjct: 67 ERLLALLESLL 77
>gnl|CDD|37896 KOG2685, KOG2685, KOG2685, Cystoskeletal protein Tektin
[Cytoskeleton].
Length = 421
Score = 28.0 bits (62), Expect = 0.97
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET---VRGRRGGVRLCRPADQITI 75
+ + +IA+A E I + +T R R V LCR Q +
Sbjct: 290 LEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRL 349
Query: 76 LDVVKATEESF 86
+D V +++
Sbjct: 350 VDEVHELDDTV 360
>gnl|CDD|35744 KOG0524, KOG0524, KOG0524, Pyruvate dehydrogenase E1, beta subunit
[Energy production and conversion].
Length = 359
Score = 27.2 bits (60), Expect = 1.7
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
+R RP D TI VK T V E + I +
Sbjct: 270 LRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQ 310
>gnl|CDD|147785 pfam05822, UMPH-1, Pyrimidine 5'-nucleotidase (UMPH-1). This
family consists of several eukaryotic pyrimidine
5'-nucleotidase proteins. P5'N-1, also known as uridine
monophosphate hydrolase-1 (UMPH-1), is a member of a
large functional group of enzymes, characterized by the
ability to dephosphorylate nucleic acids. P5'N-1
catalyses the dephosphorylation of pyrimidine nucleoside
monophosphates to the corresponding nucleosides.
Deficiencies in this proteins function can lead to
several different disorders in humans.
Length = 246
Score = 26.9 bits (60), Expect = 2.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 111 LRKALNAFFDVLTQYSIECLVRNRSSIKKIFNAG 144
LR + FFD L Q +I L IF+AG
Sbjct: 91 LRDGYDEFFDKLQQLNIPVL---------IFSAG 115
>gnl|CDD|144617 pfam01090, Ribosomal_S19e, Ribosomal protein S19e.
Length = 140
Score = 26.3 bits (59), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 43 KILQPLVKAGIVETV--RGRR 61
K LQ L KAG+VE GRR
Sbjct: 99 KALQQLEKAGLVEKDPKGGRR 119
>gnl|CDD|146014 pfam03177, Nucleoporin_C, Non-repetitive/WGA-negative nucleoporin
C-terminal. This is the C-termainl half of a family of
nucleoporin proteins. Nucleoporins are the main
components of the nuclear pore complex in eukaryotic
cells, and mediate bidirectional nucleocytoplasmic
transport, especially of mRNA and proteins. Two
nucleoporin classes are known: one is characterized by
the FG repeat pfam03093; the other is represented by
this family, and lacks any repeats. RNA undergoing
nuclear export first encounters the basket of the
nuclear pore and many nucleoporins are accessible on the
basket side of the pore.
Length = 548
Score = 26.3 bits (58), Expect = 3.2
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
KR + +R L A ND + + E I EL +Q + ++
Sbjct: 395 KRIELLLRKLAALASENDTSDLQELLKE---IEELLEVAKIQEDLLEQLLPADSR 446
>gnl|CDD|63887 cd03556, L-fucose_isomerase, L-fucose isomerase (FucIase);
FucIase converts L-fucose, an aldohexose, to its ketose
form, which prepares it for aldol cleavage (similar to
the isomerization of glucose during glycolysis).
L-fucose (or 6-deoxy-L-galactose) is found in blood
group determinants as well as in various oligo- and
polysaccharides, and glycosides in mammals, bacteria
and plants..
Length = 584
Score = 26.1 bits (57), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 50 KAGIVETVRGRRGGVR 65
K GI T+ GRRGGVR
Sbjct: 2 KIGIRPTIDGRRGGVR 17
>gnl|CDD|33238 COG3432, COG3432, Predicted transcriptional regulator
[Transcription].
Length = 95
Score = 26.0 bits (57), Expect = 3.5
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +R+ I + AI I++I ++ K ++ LV+ G++
Sbjct: 9 MVRKRRSRLEIIFDILKAISEG-GIGITRIIYGANLNYKRAQKYIEMLVEKGLIIKQDNG 67
Query: 61 RGGV 64
R V
Sbjct: 68 RRKV 71
>gnl|CDD|31568 COG1378, COG1378, Predicted transcriptional regulators
[Transcription].
Length = 247
Score = 25.8 bits (56), Expect = 4.4
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
T+Y +V + +I+EA + ++ +L+ L K G+VE + GR R
Sbjct: 15 TEYEAKVYLALLCLG--EATAKEISEASGVPRPKVYDVLRSLEKKGLVEVIEGRPKKYRA 72
Query: 67 CRPADQI 73
P + I
Sbjct: 73 VPPEELI 79
>gnl|CDD|38492 KOG3282, KOG3282, KOG3282, Uncharacterized conserved protein
[Function unknown].
Length = 190
Score = 25.7 bits (56), Expect = 4.9
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
D M + ND +IA C + L ++K L
Sbjct: 67 EVLGDLKGNFKMVLVVRNDLKMGKGKIAAQCAHAALGVYKHLM 109
>gnl|CDD|110930 pfam01978, TrmB, Sugar-specific transcriptional regulator TrmB.
One member of this family, TrmB, has been shown to be a
sugar-specific transcriptional regulator of the
trehalose/maltose ABC transporter in Thermococcus
litoralis.
Length = 68
Score = 25.6 bits (57), Expect = 5.1
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++Y +V + P +IAE + ++++L+ L K G+VE +GR
Sbjct: 7 SEYEAKVYLALLKLG--PATADEIAEESGVPRSKVYEVLRSLEKKGLVEREKGR 58
>gnl|CDD|34621 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy
production and conversion].
Length = 472
Score = 25.2 bits (55), Expect = 6.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 49 VKAGIVETVRGRRGGVRLCRPADQI 73
+ A ++E + G CRPAD +
Sbjct: 383 INAELIEKILGDEEKPITCRPADLL 407
>gnl|CDD|145440 pfam02286, Dehydratase_LU, Dehydratase large subunit. This family
contains the large subunit of the trimeric diol
dehydratases and glycerol dehydratases. These enzymes
are produced by some enterobacteria in response to
growth substances.
Length = 554
Score = 24.7 bits (54), Expect = 8.6
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 72 QITILDVVKATEESFF--VAE 90
IT LDVVKA ++ F VAE
Sbjct: 467 GITGLDVVKALAKTGFTDVAE 487
>gnl|CDD|73264 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 692
Score = 24.6 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 44 ILQPLVKAGIVETVRGRRGG 63
+L+ L G++ETVR RR G
Sbjct: 605 VLRQLRYTGMLETVRIRRAG 624
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.329 0.141 0.428
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,647,548
Number of extensions: 77502
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 23
Length of query: 144
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,426,972
Effective search space: 261191348
Effective search space used: 261191348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (23.8 bits)