HHsearch alignment for GI: 254780621 and conserved domain: cd06467
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=90.60 E-value=1.4 Score=23.81 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=46.3
Q ss_pred EECCCCEEEEEECC-CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEE--EEEEC-C
Q ss_conf 94899399999701-17702149999621799997303323556621345530230468897386615810--38528-8
Q gi|254780621|r 41 RTGENAYRITIAVS-GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMS--ASLEN-G 116 (157)
Q Consensus 41 ~~~e~~y~i~~~lP-G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~--A~~~n-G 116 (157)
T Consensus 5 Qt~-~~V~v~i~lp~~~~~~di~v~~~~~~i~v~~~~-------~~~----il~g~------L~~~I~~des~Wtie~~~ 66 (85)
T cd06467 5 QTL-DEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG-------GEP----LLDGE------LYAKVKVDESTWTLEDGK 66 (85)
T ss_pred EEC-CEEEEEEECCCCCCCCEEEEEECCCEEEEEECC-------CCC----EECCC------CCCCEECCCCEEEEECCC
T ss_conf 517-989999988898210249999746999999669-------970----25484------237574267699997899
Q ss_pred EEEEEEECCCC
Q ss_conf 59999740686
Q gi|254780621|r 117 LLYLELLRSVP 127 (157)
Q Consensus 117 iLtI~lpK~~p 127 (157)
T Consensus 67 ~l~i~L~K~~~ 77 (85)
T cd06467 67 LLEITLEKRNE 77 (85)
T ss_pred EEEEEEEECCC
T ss_conf 99999998878