Query gi|254780621|ref|YP_003065034.1| small heat shock protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 157 No_of_seqs 114 out of 2566 Neff 6.6 Searched_HMMs 33803 Date Wed Jun 1 15:08:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780621.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1shs_A Small heat shock prote 99.9 2.7E-24 7.9E-29 170.2 12.6 121 15-138 15-147 (147) 2 >1gme_A Heat shock protein 16. 99.9 2.3E-21 6.8E-26 152.1 10.9 107 31-138 4-114 (115) 3 >3gla_A Low molecular weight h 99.8 1.1E-19 3.1E-24 141.8 12.4 95 32-127 2-99 (100) 4 >2wj5_A Heat shock protein bet 99.8 5.2E-20 1.5E-24 143.7 9.0 97 35-138 2-101 (101) 5 >2bol_A TSP36, small heat shoc 99.8 2.4E-18 7E-23 133.4 7.8 87 33-127 7-96 (96) 6 >3igf_A ALL4481 protein; two-d 99.5 8E-14 2.4E-18 105.4 9.6 69 39-127 3-74 (77) 7 >2jki_S SGT1-like protein, cyt 98.2 8.4E-06 2.5E-10 55.8 8.8 79 35-128 2-82 (90) 8 >2wj7_A Alpha-crystallin B cha 98.2 3.3E-06 9.7E-11 58.3 6.2 44 57-106 1-44 (44) 9 >2bol_A TSP36, small heat shoc 98.0 7.1E-05 2.1E-09 50.0 9.4 83 35-123 66-156 (159) 10 >1rl1_A Suppressor of G2 allel 97.7 0.00031 9E-09 46.1 8.7 83 31-128 6-90 (114) 11 >1wh0_A Ubiquitin carboxyl-ter 97.3 0.0032 9.4E-08 39.8 9.4 93 33-128 18-113 (134) 12 >2o30_A Nuclear movement prote 96.9 0.026 7.8E-07 34.1 11.2 76 34-128 4-82 (131) 13 >1x5m_A Calcyclin-binding prot 96.2 0.075 2.2E-06 31.3 9.9 82 34-129 20-106 (127) 14 >3eud_A Protein SHQ1; CS domai 95.7 0.16 4.7E-06 29.3 9.5 79 31-129 14-99 (115) 15 >1wfi_A Nuclear distribution g 95.0 0.16 4.6E-06 29.4 7.8 80 32-129 5-90 (131) 16 >2cr0_A Nuclear migration prot 93.3 0.45 1.3E-05 26.5 7.2 79 33-129 16-100 (121) 17 >2k8q_A Protein SHQ1; beta-san 92.8 0.49 1.5E-05 26.3 6.8 77 33-129 2-85 (134) 18 >2kmw_A Uncharacterized protei 90.9 0.72 2.1E-05 25.2 5.9 79 34-128 4-83 (150) 19 >2wj7_A Alpha-crystallin B cha 60.4 12 0.00035 17.7 5.5 36 43-78 8-44 (50) 20 >1ew4_A CYAY protein; friedrei 55.1 11 0.00034 17.8 3.0 12 111-122 32-43 (106) 21 >1rl6_A Protein (ribosomal pro 50.9 17 0.0005 16.8 6.3 43 58-122 11-53 (80) 22 >1s3r_A Intermedilysin; toxin; 47.1 20 0.00058 16.4 3.3 33 45-77 114-146 (199) 23 >2fql_A Frataxin homolog, mito 45.9 20 0.0006 16.3 3.3 12 111-122 51-62 (123) 24 >3jyw_H 60S ribosomal protein 45.8 21 0.00061 16.3 5.1 46 58-123 8-53 (79) 25 >2cql_A OK/SW-CL.103, 60S ribo 42.3 19 0.00056 16.5 2.5 18 58-75 20-37 (100) 26 >1vq8_E 50S ribosomal protein 41.4 22 0.00064 16.1 2.7 44 58-123 9-53 (79) 27 >2zkr_e 60S ribosomal protein 39.8 24 0.0007 15.9 2.7 18 58-75 13-30 (86) 28 >3bws_A Protein LP49; two-doma 38.6 27 0.00078 15.6 4.3 32 35-66 50-82 (108) 29 >2ks0_A Uncharacterized protei 37.7 24 0.00072 15.8 2.5 26 51-76 13-38 (71) 30 >1nkw_E 50S ribosomal protein 36.7 23 0.00069 15.9 2.3 44 58-123 39-82 (109) 31 >2j01_H 50S ribosomal protein 34.1 21 0.00063 16.2 1.7 19 58-76 12-30 (81) 32 >1xmx_A Hypothetical protein V 32.7 25 0.00075 15.7 1.9 20 102-121 40-59 (69) 33 >3bbo_I Ribosomal protein L6; 32.2 15 0.00045 17.0 0.7 45 58-123 54-98 (123) 34 >1kmj_A Selenocysteine lyase; 31.8 2.2 6.6E-05 22.2 -3.6 75 1-75 1-75 (120) 35 >3i1n_G 50S ribosomal protein 20.7 24 0.00072 15.8 0.0 43 58-122 12-54 (81) 36 >1pfo_A Perfringolysin O, PFO; 20.3 46 0.0014 14.1 1.3 16 45-60 86-101 (191) No 1 >>1shs_A Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii} (A:) Probab=99.92 E-value=2.7e-24 Score=170.20 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=97.8 Q ss_pred HHHHHHHHHHHHC--------CCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCC--CCCCC Q ss_conf 6788976454106--------6777888843689948993999997011770214999962179999730332--35566 Q gi|254780621|r 15 YDTVLSMLDGLGA--------PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSE--EKETV 84 (157) Q Consensus 15 fD~~f~~~~~~~~--------~~~~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~--~~~~~ 84 (157) ||++++.++.... .....+.|++||+++ +++|.|.++|||++++||+|+++++.|+|+|++... +.... T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~di~e~-~~~~~i~~~lPG~~~edi~V~~~~~~l~i~~~~~~~~~~~~~~ 93 (147) T 1shs_A 15 FKEFFATPMTGTTMIQSSTGIQISGKGFMPISIIEG-DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER 93 (147) T ss_dssp ------------------CCCEEEEESCCCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCE T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCEEEEEEECCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCE T ss_conf 887641423244333543332346678883789984-9979999988998422499998588899999962334214650 Q ss_pred CEEEEEEECCEEEEEEECCCCCEEE--EEEEECCEEEEEEECCCCHHHCCEEEEEC Q ss_conf 2134553023046889738661581--03852885999974068601187288733 Q gi|254780621|r 85 EYLHRGIAKRAFERRFQLADFVEVM--SASLENGLLYLELLRSVPERMKPRRIEIS 138 (157) Q Consensus 85 ~~~~~e~~~~~F~R~f~Lp~~ve~~--~A~~~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157) +++++|+.+|+|.|+|.||++++.. +|+|+||||+|++||. +..++|+|+|. T Consensus 94 ~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~ipK~--~~~~~~~I~Iq 147 (147) T 1shs_A 94 IIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKA--ESSIKKGINIE 147 (147) T ss_dssp EEEECSCCCCEEEEEEECSSCBCGGGCEEEEETTEEEEEEEBC--GGGCCEECCCC T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEEEC--CCCCCCEEEEC T ss_conf 6864000257538999898881124339999899999999826--77898026609 No 2 >>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} (A:37-151) Probab=99.86 E-value=2.3e-21 Score=152.06 Aligned_cols=107 Identities=23% Similarity=0.337 Sum_probs=89.8 Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEE-CC-CCCCCCCEEEEEEECCEEEEEEECCCCCEE Q ss_conf 7888843689948993999997011770214999962179999730-33-235566213455302304688973866158 Q gi|254780621|r 31 TSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEK-KS-EEKETVEYLHRGIAKRAFERRFQLADFVEV 108 (157) Q Consensus 31 ~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~-~~-~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~ 108 (157) ..+.|++||+++ +++|.|.++|||++++||+|++.++.|.|.+.+ .. ...+...++.+|+.+|.|.|+|.||++++. T Consensus 4 ~~~~P~~di~e~-~~~~~i~~~lPG~~~edi~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 82 (115) T 1gme_A 4 AFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKV 82 (115) T ss_dssp HHGGGCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCG T ss_pred CCCCCCEEEEEC-CCEEEEEEECCCCCHHHEEEEEECCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCEEE T ss_conf 557786068988-9879999999999867689999559989999898204544421267775301129999999977572 Q ss_pred E--EEEEECCEEEEEEECCCCHHHCCEEEEEC Q ss_conf 1--03852885999974068601187288733 Q gi|254780621|r 109 M--SASLENGLLYLELLRSVPERMKPRRIEIS 138 (157) Q Consensus 109 ~--~A~~~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157) . +|+|+||+|+|++||..+...+.++|+|+ T Consensus 83 ~~i~A~~~~GiL~I~ipk~~~~~~~~~~I~Ie 114 (115) T 1gme_A 83 EEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 114 (115) T ss_dssp GGCEEEEETTEEEEEEECCCCCTTCCCCCCCC T ss_pred CCEEEEEECCEEEEEEECCCCCCCCCEEEEEC T ss_conf 32199988999999997067677886698606 No 3 >>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} (A:) Probab=99.83 E-value=1.1e-19 Score=141.77 Aligned_cols=95 Identities=31% Similarity=0.504 Sum_probs=83.2 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCC-CCCCCCEEEEEEECCEEEEEEECCCCCEE-- Q ss_conf 888843689948993999997011770214999962179999730332-35566213455302304688973866158-- Q gi|254780621|r 32 SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSE-EKETVEYLHRGIAKRAFERRFQLADFVEV-- 108 (157) Q Consensus 32 ~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~-~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~-- 108 (157) .+.|++||+++ +++|+|.++|||++++||+|.++++.|+|+|++... ..+...++..++.+|.|.|+|.||++++. T Consensus 2 ~~~P~~di~e~-~d~~~i~~~lPG~~~e~i~i~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~ 80 (100) T 3gla_A 2 QWVPRVDIKEE-VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADG 80 (100) T ss_dssp CSCCCEEEEEC-SSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTS T ss_pred CCCCCEEEEEC-CCEEEEEEECCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCC T ss_conf 86885489997-99799999979994253999997236999986600136677459986550666999999998701453 Q ss_pred EEEEEECCEEEEEEECCCC Q ss_conf 1038528859999740686 Q gi|254780621|r 109 MSASLENGLLYLELLRSVP 127 (157) Q Consensus 109 ~~A~~~nGiLtI~lpK~~p 127 (157) ++|+|+||+|+|++||..+ T Consensus 81 i~A~~~nGiL~I~~PK~~~ 99 (100) T 3gla_A 81 ITAAGRNGVLEIRIPKRPA 99 (100) T ss_dssp CEEEEETTEEEEEEEBC-- T ss_pred EEEEEECCEEEEEEECCCC T ss_conf 0999989999999813678 No 4 >>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} (A:) Probab=99.82 E-value=5.2e-20 Score=143.69 Aligned_cols=97 Identities=20% Similarity=0.363 Sum_probs=84.2 Q ss_pred CCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE--EEEE Q ss_conf 84368994899399999701177021499996217999973033235566213455302304688973866158--1038 Q gi|254780621|r 35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV--MSAS 112 (157) Q Consensus 35 P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~--~~A~ 112 (157) |++||+++ +++|.|.++||||+++||+|+++++.|+|+|+++.....+ ++.+|.|.|+|.||.+++. .+|+ T Consensus 2 P~~di~e~-~~~~~i~~~lpG~~~edi~v~v~~~~l~i~~~~~~~~~~~------~~~~~~f~r~~~lP~~vd~~~i~A~ 74 (101) T 2wj5_A 2 AMAQVPTD-PGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEH------GFIAREFHRRYRLPPGVDPAAVTSA 74 (101) T ss_dssp CCCCCCCC-SSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTT------CCEEEEEEEEEECCTTBCTTCCEEE T ss_pred CCCEEEEC-CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEEEECCCC------CEEEEEEEEEEECCCCCCHHHEEEE T ss_conf 84548375-9989999999999879929999899899999983352789------7499989999983346894676999 Q ss_pred E-ECCEEEEEEECCCCHHHCCEEEEEC Q ss_conf 5-2885999974068601187288733 Q gi|254780621|r 113 L-ENGLLYLELLRSVPERMKPRRIEIS 138 (157) Q Consensus 113 ~-~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157) | +||+|+|++||..+++.++++|+|. T Consensus 75 ~~~dGvL~I~~PK~~~~~~~~~~I~Ie 101 (101) T 2wj5_A 75 LSPEGVLSIQATPASAQASLPSPPAAK 101 (101) T ss_dssp ECTTSEEEEEECBCCCCCSSCC----- T ss_pred ECCCCEEEEEEECCCCCCCCCCCCCCC T ss_conf 889978999987787544589798899 No 5 >>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} (A:95-190) Probab=99.75 E-value=2.4e-18 Score=133.42 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=73.9 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE--EE Q ss_conf 8884368994899399999701177021499996217999973033235566213455302304688973866158--10 Q gi|254780621|r 33 AYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV--MS 110 (157) Q Consensus 33 ~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~--~~ 110 (157) +-|++||+++ +++|.|.++||||+++||+|+++++.|+|.|+++.... .++.+|+|.|+|.||++++. .+ T Consensus 7 ~~p~~di~e~-~~~~~i~~~lPG~~~edi~v~~~~~~l~i~~~~~~~~~-------~~~~~~~f~r~~~LP~~vd~~~i~ 78 (96) T 2bol_A 7 KDAYEVGKDG-RLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACG-------DAAMSESVGRSIPLPPSVDRNHIQ 78 (96) T ss_dssp GGCEEECTTS-SEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTT-------CCCBCCCEEEEEECCTTBCGGGCE T ss_pred HHHHHCCCCC-CEEEEEEEECCCCCHHHCEEEEECCEEEEEEEEEEECC-------CCEEEEEEEEEEECCCCCCHHHEE T ss_conf 3054436788-62599999999997567199999999999999801278-------988999999999898764744779 Q ss_pred EEE-ECCEEEEEEECCCC Q ss_conf 385-28859999740686 Q gi|254780621|r 111 ASL-ENGLLYLELLRSVP 127 (157) Q Consensus 111 A~~-~nGiLtI~lpK~~p 127 (157) |+| +||||+|++||..| T Consensus 79 A~~~~nGvL~I~~pK~~P 96 (96) T 2bol_A 79 ATITTDDVLVIEAPVNEP 96 (96) T ss_dssp EEECSSSEEEEEEEBSSC T ss_pred EEECCCCEEEEEECCCCC T ss_conf 997689759999678887 No 6 >>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:298-374) Probab=99.52 E-value=8e-14 Score=105.40 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=60.2 Q ss_pred EEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCC---EEEEEEEEC Q ss_conf 89948993999997011770214999962179999730332355662134553023046889738661---581038528 Q gi|254780621|r 39 IERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFV---EVMSASLEN 115 (157) Q Consensus 39 I~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~v---e~~~A~~~n 115 (157) |.++ +++|.|.++|||++++||+|++.++.|+|++ |+|+|+|.||..+ ++.+|+|+| T Consensus 3 I~e~-~~~~~v~~~lPgv~~edi~V~~~~~~L~I~~-------------------g~~~R~i~LP~~i~~~~i~~A~~~~ 62 (77) T 3igf_A 3 ITID-THNRQVRLFLPGFDKKQVKLTQYGPEVTVEA-------------------GDQRRNIFLPPALSGRPITGAKFQN 62 (77) T ss_dssp EEEE-TTTTEEEEECTTCCGGGCEEEEETTEEEEEE-------------------TTEEEEEECCTTTTTCCEEEEEEET T ss_pred EEEC-CCCEEEEEECCCCCHHHCEEEEECCEEEEEE-------------------CCEECCCCCCHHHCCCCCCCEEEEC T ss_conf 5884-8955999989998767717999898899998-------------------9998033498788278665249989 Q ss_pred CEEEEEEECCCC Q ss_conf 859999740686 Q gi|254780621|r 116 GLLYLELLRSVP 127 (157) Q Consensus 116 GiLtI~lpK~~p 127 (157) |+|+|++||..+ T Consensus 63 GvL~I~~pK~~~ 74 (77) T 3igf_A 63 NYLIISFLEHHH 74 (77) T ss_dssp TEEEEEECCC-- T ss_pred CEEEEEEEECCC T ss_conf 989999984256 No 7 >>2jki_S SGT1-like protein, cytosolic heat shock protein 90; HSP90 SGT1, stress response, chaperone; HET: ADP; 3.3A {Arabidopsis thaliana} (S:) Probab=98.23 E-value=8.4e-06 Score=55.77 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=64.2 Q ss_pred CCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE--EEE Q ss_conf 843689948993999997011770214999962179999730332355662134553023046889738661581--038 Q gi|254780621|r 35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM--SAS 112 (157) Q Consensus 35 P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~--~A~ 112 (157) |.|+-++++ +...|.+.+||+.++|+.|++.++.|+|++..... ..|...+.|...|++. .++ T Consensus 2 p~~~W~Qt~-~~V~i~i~~~~v~~~di~v~~~~~~l~i~~~~~~~--------------~~~~~~~~L~~~I~~~~s~~~ 66 (90) T 2jki_S 2 YRHEYYQKP-EEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGE--------------DAYYLQPRLFGKIIPDKCKYE 66 (90) T ss_dssp CEEEEEECS-SEEEEEEECTTCCGGGEEEEECSSBEEEEECCSSS--------------CCEEECCBBSSCBCGGGCEEE T ss_pred CCCCEEECC-CEEEEEEEECCCCHHHEEEECCCCEEEEEEECCCC--------------CEEEEEEECCCCCCCHHCEEE T ss_conf 652479489-98999999554487886998479889999863689--------------388886013464252245999 Q ss_pred EECCEEEEEEECCCCH Q ss_conf 5288599997406860 Q gi|254780621|r 113 LENGLLYLELLRSVPE 128 (157) Q Consensus 113 ~~nGiLtI~lpK~~pe 128 (157) +.+|.|.|+|+|..++ T Consensus 67 ~~~~~i~i~L~K~~~~ 82 (90) T 2jki_S 67 VLSTKIEICLAKADII 82 (90) T ss_dssp ECSSCEEEEEEBSSSC T ss_pred EECCEEEEEEEECCCC T ss_conf 9599999999989999 No 8 >>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:22-65) Probab=98.21 E-value=3.3e-06 Score=58.31 Aligned_cols=44 Identities=25% Similarity=0.584 Sum_probs=38.2 Q ss_pred CHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCC Q ss_conf 70214999962179999730332355662134553023046889738661 Q gi|254780621|r 57 HPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFV 106 (157) Q Consensus 57 ~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~v 106 (157) +|+||+|.+.++.|.|+|+++...+++ |+..|+|.|+|.||++| T Consensus 1 sPeei~Vkv~~~~l~V~gkHeek~d~~------g~v~r~F~R~y~LP~~V 44 (44) T 2wj7_A 1 SPEELKVKVLGDVIEVHGKHEERQDEH------GFISREFHRKYRIPADV 44 (44) T ss_dssp CGGGEEEEEETTEEEEEEEECCCBCSS------SEEEEEEEEEEECCTTC T ss_pred CHHHEEEEEECCEEEEEEEEEEECCCC------CEEEEEEEEEEECCCCC T ss_conf 879969999899899999986752678------67998688888387633 No 9 >>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} (A:60-94,A:191-314) Probab=97.98 E-value=7.1e-05 Score=50.03 Aligned_cols=83 Identities=18% Similarity=0.378 Sum_probs=63.2 Q ss_pred CCEEEEEECCCCEEEEEEC---CCCCHHHEEEEEECCEEE---EEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE Q ss_conf 8436899489939999970---117702149999621799---9973033235566213455302304688973866158 Q gi|254780621|r 35 PPYDIERTGENAYRITIAV---SGFHPSEITIEVDSSILM---VRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV 108 (157) Q Consensus 35 P~~dI~~~~e~~y~i~~~l---PG~~kedi~V~v~~~~Lt---I~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~ 108 (157) +-.-|.+.++.+-.|++++ |-|+++|+.|.+..|.|. |+|+++..+.... -+++.|..+|.+|+-++. T Consensus 66 ~GlTIi~~e~ggk~iHvEi~vDP~ykp~Dlci~vd~nri~~~~VsGk~~k~~n~s~------s~~~EFs~sy~iPe~vdp 139 (159) T 2bol_A 66 EGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASH------SEHREFYKAFVTPEVVDA 139 (159) T ss_dssp CEEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------------CEEEEEEEECSSEECG T ss_pred CCCCEEECCCCCEEEEEEEECCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCE------EEEEEEEEEEECCCCCCH T ss_conf 78755652678768999983299977699099999999999999844234577668------999999999789887385 Q ss_pred E--EEEEECCEEEEEEE Q ss_conf 1--03852885999974 Q gi|254780621|r 109 M--SASLENGLLYLELL 123 (157) Q Consensus 109 ~--~A~~~nGiLtI~lp 123 (157) . .|.+-+|.|.|..| T Consensus 140 ssv~AqlVdntlVlEAP 156 (159) T 2bol_A 140 SKTQAEIVDGLMVVEAP 156 (159) T ss_dssp GGCEEEEETTEEEEEEE T ss_pred HHEEEEEECCEEEEEEE T ss_conf 24599987999999975 No 10 >>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} (A:) Probab=97.69 E-value=0.00031 Score=46.12 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=64.8 Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE- Q ss_conf 7888843689948993999997011770214999962179999730332355662134553023046889738661581- Q gi|254780621|r 31 TSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM- 109 (157) Q Consensus 31 ~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~- 109 (157) ....|+|+-+++++ ...|.+.+||+.++++.|++.++.|.|...-.. + ..|...+.|...|++. T Consensus 6 ~~~~~~~~W~Qt~~-~V~i~i~~~~~~~~~v~v~~~~~~~~v~~~~~~----~----------~~~~~~~~L~~~I~~~~ 70 (114) T 1rl1_A 6 HQSKIKYDWYQTES-QVVITLMIKNVQKNDVNVEFSEKELSALVKLPS----G----------EDYNLKLELLHPIIPEQ 70 (114) T ss_dssp --CCCCEEEEECSS-EEEEEECCCSCCGGGEEEECSSSCEEEEEECTT----S----------SEEEEEECBSSCCCGGG T ss_pred CCCCCCEEEEECCC-EEEEEEEECCCCHHHEEEEEECCEEEEEEECCC----C----------CEEEEEEECCCCCCCCC T ss_conf 68998761897899-999999938998423499995488999997789----9----------47999866455066521 Q ss_pred -EEEEECCEEEEEEECCCCH Q ss_conf -0385288599997406860 Q gi|254780621|r 110 -SASLENGLLYLELLRSVPE 128 (157) Q Consensus 110 -~A~~~nGiLtI~lpK~~pe 128 (157) +..+.+|.+.|+|.|..|. T Consensus 71 s~~~~~~~~i~i~L~K~~~~ 90 (114) T 1rl1_A 71 STFKVLSTKIEIKLKKPEAV 90 (114) T ss_dssp EEEEECSSSEEEEEECSSCC T ss_pred EEEEECCCEEEEEEECCCCC T ss_conf 09998299999999847999 No 11 >>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:) Probab=97.27 E-value=0.0032 Score=39.83 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=68.4 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEE-EEECCEEEEEEECCCCCEEEE- Q ss_conf 888436899489939999970117702149999621799997303323556621345-530230468897386615810- Q gi|254780621|r 33 AYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHR-GIAKRAFERRFQLADFVEVMS- 110 (157) Q Consensus 33 ~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~-e~~~~~F~R~f~Lp~~ve~~~- 110 (157) ..|.|+=++++++...|.+-++|+.++|+.|++..+.|.|+..-...... .++. ......|...+.|-..|.+.. T Consensus 18 ~~~~~~W~Qt~~~~V~i~i~~k~v~~~~v~v~~~~~~l~v~~~~~~~~~~---~~~~~~~~~~~y~~~~~L~~~I~pe~s 94 (134) T 1wh0_A 18 AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFL---RLHPGCGPHTTFRWQVKLRNLIEPEQC 94 (134) T ss_dssp SCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHH---HHSTTCCTTSCEEEEEEBSSCEEEEEE T ss_pred CCCCCCCEECCCCEEEEEEEECCCCCHHEEEEEECCEEEEEEECCCCCCE---EECCCCCCCEEEEEECCCCCCCCCHHC T ss_conf 00244516438978999999588762034899857989999887888630---112366766057872213451660154 Q ss_pred -EEEECCEEEEEEECCCCH Q ss_conf -385288599997406860 Q gi|254780621|r 111 -ASLENGLLYLELLRSVPE 128 (157) Q Consensus 111 -A~~~nGiLtI~lpK~~pe 128 (157) .++.++-|.|+|.|..+. T Consensus 95 ~~~i~~~kiei~L~K~~~~ 113 (134) T 1wh0_A 95 TFCFTASRIDICLRKRQSQ 113 (134) T ss_dssp EEEECSSEEEEEEEESSSC T ss_pred EEEECCCEEEEEEEECCCC T ss_conf 8997899899999978999 No 12 >>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.66A {Encephalitozoon cuniculi gb-m1} (A:) Probab=96.89 E-value=0.026 Score=34.13 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=60.1 Q ss_pred CCCEEEEEECCCCEEEEEECC-CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEE-- Q ss_conf 884368994899399999701-17702149999621799997303323556621345530230468897386615810-- Q gi|254780621|r 34 YPPYDIERTGENAYRITIAVS-GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMS-- 110 (157) Q Consensus 34 ~P~~dI~~~~e~~y~i~~~lP-G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~-- 110 (157) .|+|+=+++++ ...|.+-|| |+.++||.|.+..+.|+|++. +.+.-...|...|++.. T Consensus 4 ~~~y~W~Qt~~-~V~i~i~l~~~~~~~dv~v~~~~~~l~v~~~------------------~~~~~~~~L~~~I~~~~s~ 64 (131) T 2o30_A 4 EAKYTWDQELN-EINIQFPVTGDADSSAIKIRXVGKKICVKNQ------------------GEIVIDGELLHEVDVSSLW 64 (131) T ss_dssp -CCCEEEEETT-EEEEEEECC---CCSCEEEEEETTEEEEEET------------------TEEEEEEEBSSCEEEEEEE T ss_pred CCCEEEEEECC-EEEEEEECCCCCCCCEEEEEEEEEEEEECCC------------------CCEEEECCCCCCCCCCCCE T ss_conf 88777995589-9999999389972234999985727663468------------------8148706026733355778 Q ss_pred EEEECCEEEEEEECCCCH Q ss_conf 385288599997406860 Q gi|254780621|r 111 ASLENGLLYLELLRSVPE 128 (157) Q Consensus 111 A~~~nGiLtI~lpK~~pe 128 (157) .++.++.|.|+|.|..+. T Consensus 65 ~~i~~~~i~i~L~K~~~~ 82 (131) T 2o30_A 65 WVINGDVVDVNVTKKRNE 82 (131) T ss_dssp EEEETTEEEEEEEESSCC T ss_pred EEEECCEEEEEEEECCCC T ss_conf 998099999999956888 No 13 >>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=96.21 E-value=0.075 Score=31.35 Aligned_cols=82 Identities=10% Similarity=0.117 Sum_probs=59.3 Q ss_pred CCCEEEEEECCCCEEEEEECCCC---CHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE- Q ss_conf 88436899489939999970117---70214999962179999730332355662134553023046889738661581- Q gi|254780621|r 34 YPPYDIERTGENAYRITIAVSGF---HPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM- 109 (157) Q Consensus 34 ~P~~dI~~~~e~~y~i~~~lPG~---~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~- 109 (157) .|.|+=+++++ ...|.+.|||. .++||.|.+..+.|.|+..-.... ..+.....|...|++. T Consensus 20 ~~~~~W~Qt~~-~V~i~i~l~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~-------------~~~~~~~~L~~~I~~~~ 85 (127) T 1x5m_A 20 ISNYGWDQSDK-FVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGK-------------SYSMIVNNLLKPISVEG 85 (127) T ss_dssp CCSCEEEEETT-EEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSS-------------CEEEEEECBSSCCCTTT T ss_pred CCEEEEEECCC-EEEEEEECCCCCCCCHHHEEEEEECCEEEEEEECCCCC-------------CEEEEHHHHHHHCCHHH T ss_conf 25078994799-89999988875677744869997279999999747996-------------03777467430135523 Q ss_pred -EEEEECCEEEEEEECCCCHH Q ss_conf -03852885999974068601 Q gi|254780621|r 110 -SASLENGLLYLELLRSVPER 129 (157) Q Consensus 110 -~A~~~nGiLtI~lpK~~pe~ 129 (157) .-++.++-|.|+|.|..+.. T Consensus 86 s~~~i~~~~i~i~L~K~~~~~ 106 (127) T 1x5m_A 86 SSKKVKTDTVLILCRKKVENT 106 (127) T ss_dssp CEEEEETTEEEEEEECSSSSC T ss_pred CEEEECCCEEEEEEEECCCCC T ss_conf 303762877999996627788 No 14 >>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} (A:) Probab=95.66 E-value=0.16 Score=29.30 Aligned_cols=79 Identities=10% Similarity=0.195 Sum_probs=57.3 Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCC--HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE Q ss_conf 788884368994899399999701177--021499996217999973033235566213455302304688973866158 Q gi|254780621|r 31 TSAYPPYDIERTGENAYRITIAVSGFH--PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV 108 (157) Q Consensus 31 ~~~~P~~dI~~~~e~~y~i~~~lPG~~--kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~ 108 (157) ...+|.+.|.++ ++...|.+-+|-+. ..++++.++++..+.-. .-|-.+..||..+.. T Consensus 14 ~~ITP~F~itQD-d~fv~I~I~~P~vr~s~~~~Ei~id~~~F~F~~-------------------~PYyLRL~lp~~ive 73 (115) T 3eud_A 14 KXITPRFSITQD-EEFIFLKIFISNIRFSAVGLEIIIQENXIIFHL-------------------SPYYLRLRFPHELID 73 (115) T ss_dssp CCBCCCEEEEEC-SSEEEEEEECCSCCCCSSSCEEEEETTEEEEEE-------------------TTEEEEEECSSCEEC T ss_pred CEECCEEEEEEC-CCEEEEEEEECCCCCCCCCEEEEECCCEEEEEC-------------------CCCEEEEECCCCEEC T ss_conf 778750898868-998999999363002677618997488999963-------------------660699817972661 Q ss_pred ---EEEEE--ECCEEEEEEECCCCHH Q ss_conf ---10385--2885999974068601 Q gi|254780621|r 109 ---MSASL--ENGLLYLELLRSVPER 129 (157) Q Consensus 109 ---~~A~~--~nGiLtI~lpK~~pe~ 129 (157) .+|+| +.|.++|+|||..|-+ T Consensus 74 d~~~~asYd~~~g~~tv~lpKe~~GE 99 (115) T 3eud_A 74 DERSTAQYDSKDECINVKVAKLNKNE 99 (115) T ss_dssp STTCEEEEETTTTEEEEEEEESSTTC T ss_pred CCCCEEEEECCCCEEEEEEECCCCCC T ss_conf 88733889776658999980776898 No 15 >>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} (A:) Probab=95.03 E-value=0.16 Score=29.36 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=54.3 Q ss_pred CCCCCEEEEEECCCCEEEEEECC---CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE Q ss_conf 88884368994899399999701---177021499996217999973033235566213455302304688973866158 Q gi|254780621|r 32 SAYPPYDIERTGENAYRITIAVS---GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV 108 (157) Q Consensus 32 ~~~P~~dI~~~~e~~y~i~~~lP---G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~ 108 (157) ...|.|.=.++.+ ...|.+.++ |+.++||+|.+.+..|.++.....- .-...|...|++ T Consensus 5 ~~~p~y~W~Qt~~-~V~i~i~l~~~~~~~~~di~v~~~~~~l~~~~~~~~~-----------------~~~~~L~~~I~~ 66 (131) T 1wfi_A 5 SSGPNYRWTQTLA-ELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPP-----------------VVDGELYNEVKV 66 (131) T ss_dssp SSCCSSEEEECSS-EEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCC-----------------SBCSCBSSCBCS T ss_pred CCCCCEEEEEECC-EEEEEEECCCCCCCCHHHEEEEEECCEEEEEECCCEE-----------------EECCCCCCCCCC T ss_conf 6689857884589-8999997579999530037999736989999889704-----------------761724574054 Q ss_pred E--EEEEEC-CEEEEEEECCCCHH Q ss_conf 1--038528-85999974068601 Q gi|254780621|r 109 M--SASLEN-GLLYLELLRSVPER 129 (157) Q Consensus 109 ~--~A~~~n-GiLtI~lpK~~pe~ 129 (157) . ...+.+ ++|.|+|.|..|.. T Consensus 67 ~~s~~~i~~~~~l~i~L~K~~~~~ 90 (131) T 1wfi_A 67 EESSWLIEDGKVVTVHLEKINKME 90 (131) T ss_dssp TTCEEEEETTTEEEEEEEBSSSCC T ss_pred CCCEEEEECCCEEEEEEEECCCCC T ss_conf 533799957999999999587887 No 16 >>2cr0_A Nuclear migration protein NUDC; CS domain, beta sandwich, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=93.30 E-value=0.45 Score=26.53 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=54.4 Q ss_pred CCCCEEEEEECCCCEEEEEECC---CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE Q ss_conf 8884368994899399999701---1770214999962179999730332355662134553023046889738661581 Q gi|254780621|r 33 AYPPYDIERTGENAYRITIAVS---GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM 109 (157) Q Consensus 33 ~~P~~dI~~~~e~~y~i~~~lP---G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~ 109 (157) ..|.|.=.++. +...|.+.+| |++++||+|.+..+.|.|+..-. . |.....|-..|++. T Consensus 16 ~~~~y~W~Qt~-~~V~i~i~~~~~~~~~~~~i~v~~~~~~i~v~~~~~-------~----------~~l~~~L~~~I~~~ 77 (121) T 2cr0_A 16 DLPNYRWTQTL-AELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQ-------P----------PVVDGELYNEVKVE 77 (121) T ss_dssp ECSSCEEEECS-SEEEEEEECCCSSCCCTTTBCCEECSSEEEECBSSS-------C----------CSEEEEBSSCBCTT T ss_pred CCCCEEEEEEC-CEEEEEEECCCCCCCCHHHEEEEECCCEEEEEECCC-------C----------EEEECCCCCCCCCC T ss_conf 67998889689-989999981789997446879994168899998687-------4----------17814234726655 Q ss_pred E--EEEEC-CEEEEEEECCCCHH Q ss_conf 0--38528-85999974068601 Q gi|254780621|r 110 S--ASLEN-GLLYLELLRSVPER 129 (157) Q Consensus 110 ~--A~~~n-GiLtI~lpK~~pe~ 129 (157) . ..+++ +.|.|+|.|..+.. T Consensus 78 ~s~~~i~~~k~i~i~L~K~~~~~ 100 (121) T 2cr0_A 78 ESSWLIEDGKVVTVHLEKINKME 100 (121) T ss_dssp TCEEEEETTTEEEEEEEBSCTTC T ss_pred CCEEEEECCCEEEEEEEECCCCC T ss_conf 56899958999999999266988 No 17 >>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} (A:) Probab=92.80 E-value=0.49 Score=26.29 Aligned_cols=77 Identities=10% Similarity=0.211 Sum_probs=54.2 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCC--HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE-- Q ss_conf 8884368994899399999701177--021499996217999973033235566213455302304688973866158-- Q gi|254780621|r 33 AYPPYDIERTGENAYRITIAVSGFH--PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV-- 108 (157) Q Consensus 33 ~~P~~dI~~~~e~~y~i~~~lPG~~--kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~-- 108 (157) .+|.+.|.++ ++...|.+-+|-+. .-++++.+++...+.-. .-|-.+..||..+.- T Consensus 2 iTP~F~itQd-~~fv~I~I~~p~~r~s~~~~e~~i~~~~F~F~~-------------------~PYyLRL~fp~~i~ed~ 61 (134) T 2k8q_A 2 ITPRFSITQD-EEFIFLKIFISNIRFSAVGLEIIIQENMIIFHL-------------------SPYYLRLRFPHELIDDE 61 (134) T ss_dssp CCSEEEEEEC-SSEEEEEEECCSSCCCSSSCCCEECSSSEEECS-------------------SSSCEEECCSSCEECCS T ss_pred CCCEEEEEEC-CCEEEEEEEECCCCCCCCCEEEEECCCEEEEEC-------------------CCCEEEEECCCCEECCC T ss_conf 7861898758-998999999252012677527997488999962-------------------66068980797252388 Q ss_pred -EEEEE--ECCEEEEEEECCCCHH Q ss_conf -10385--2885999974068601 Q gi|254780621|r 109 -MSASL--ENGLLYLELLRSVPER 129 (157) Q Consensus 109 -~~A~~--~nGiLtI~lpK~~pe~ 129 (157) .+|+| +.|.++|+|||..|-+ T Consensus 62 ~~~a~yd~~~~~~tv~lpKe~~Ge 85 (134) T 2k8q_A 62 RSTAQYDSKDECINVKVAKLNKNE 85 (134) T ss_dssp SCEEEEETTTTEEEEEEEESSTTC T ss_pred CCEEEEECCCCEEEEEEECCCCCC T ss_conf 733889766878999983776787 No 18 >>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} (A:) Probab=90.88 E-value=0.72 Score=25.25 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=54.2 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEE Q ss_conf 88436899489939999970117702149999621799997303323556621345530230468897386615810385 Q gi|254780621|r 34 YPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASL 113 (157) Q Consensus 34 ~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~ 113 (157) .|.|+=+++++ ...|.+.++|+...+|+| +.+.+.+++.-... + ..|.-.+.|-..|.+....+ T Consensus 4 ~p~~~W~Qt~~-~V~i~i~~~~v~~~~v~v--~~~~~~~~~~~~~~---~----------~~y~~~l~L~~~I~p~~s~~ 67 (150) T 2kmw_A 4 NPEVLWAQRSD-KVYLTVALPDAKDISVKC--EPQGLFSFSALGAQ---G----------ERFEFSLELYGKIMTEYRKN 67 (150) T ss_dssp CCCEEEEECSS-EEEEEECCSSEEEEEECC--CTTEEEEEEEETTT---T----------EEEEEEEEBSSCEEEEEEEE T ss_pred CCCEEEEECCC-EEEEEEEECCCCCCEEEE--EECEEEEEEECCCC---C----------CEEEEEEEEECCCCCCCCEE T ss_conf 99888876799-899999958998764899--61616998501789---9----------76899999701115454368 Q ss_pred ECC-EEEEEEECCCCH Q ss_conf 288-599997406860 Q gi|254780621|r 114 ENG-LLYLELLRSVPE 128 (157) Q Consensus 114 ~nG-iLtI~lpK~~pe 128 (157) .-| -+.|+|.|..+. T Consensus 68 ~~~~~iei~L~K~e~~ 83 (150) T 2kmw_A 68 VGLRNIIFSIQKEERS 83 (150) T ss_dssp EESSSEEEEEEECCSS T ss_pred ECCCEEEEEEECCCCC T ss_conf 3487699999827888 No 19 >>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:1-21,A:66-94) Probab=60.38 E-value=12 Score=17.71 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=24.1 Q ss_pred CCCCEEEEEECCCCCHHHEEEEEE-CCEEEEEEEECC Q ss_conf 899399999701177021499996-217999973033 Q gi|254780621|r 43 GENAYRITIAVSGFHPSEITIEVD-SSILMVRGEKKS 78 (157) Q Consensus 43 ~e~~y~i~~~lPG~~kedi~V~v~-~~~LtI~g~~~~ 78 (157) .++.|-+.+++-.|++--|.-++. +++|||.|-++. T Consensus 8 ekd~fsvnldvkhfDPl~ITsSLSsDGVLTv~gPrkq 44 (50) T 2wj7_A 8 EKDRFSVNLDVKHFDPLTITSSLSSDGVLTVNGPRKQ 44 (50) T ss_dssp CSSEEEEEEECTTSCGGGCEEEECTTSEEEEEEECC- T ss_pred CCCEEEEEEECCCCCHHHEEEEECCCCEEEEEEECCC T ss_conf 7986999999999996686999888988999988687 No 20 >>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} (A:) Probab=55.05 E-value=11 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=4.5 Q ss_pred EEEECCEEEEEE Q ss_conf 385288599997 Q gi|254780621|r 111 ASLENGLLYLEL 122 (157) Q Consensus 111 A~~~nGiLtI~l 122 (157) +.+.+|||+|++ T Consensus 32 ~e~~~gVLti~f 43 (106) T 1ew4_A 32 CEINGGVLTITF 43 (106) T ss_dssp EEEETTEEEEEC T ss_pred EECCCCEEEEEE T ss_conf 460599899997 No 21 >>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} (A:1-80) Probab=50.93 E-value=17 Score=16.75 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=31.3 Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEE Q ss_conf 02149999621799997303323556621345530230468897386615810385288599997 Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLEL 122 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~l 122 (157) |++++|+++++.|+|+|-+- +.+..|+..+. ...++|-|.|.. T Consensus 11 P~~V~v~i~~~~i~vkGp~G-------------------~l~~~~~~~v~---~~~~~~~i~i~~ 53 (80) T 1rl6_A 11 PAGVTVTVNGNTVTVKGPKG-------------------ELTRTFHPDMT---ITVEGNVITVTR 53 (80) T ss_dssp CTTCEEEEETTEEEEEETTE-------------------EEEEECCTTCE---EEEETTEEEEEC T ss_pred CCCCEEEEECCEEEEEECCE-------------------EEEEEECCCCC---CCCCCCEEEEEE T ss_conf 99988999799999994986-------------------89886447420---011685899984 No 22 >>1s3r_A Intermedilysin; toxin; 2.60A {Streptococcus intermedius} (A:1-77,A:120-179,A:260-304,A:384-400) Probab=47.13 E-value=20 Score=16.39 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=28.3 Q ss_pred CCEEEEEECCCCCHHHEEEEEECCEEEEEEEEC Q ss_conf 939999970117702149999621799997303 Q gi|254780621|r 45 NAYRITIAVSGFHPSEITIEVDSSILMVRGEKK 77 (157) Q Consensus 45 ~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~ 77 (157) ....|.++|||+...+=.|.+.+-.-+|+-.-. T Consensus 114 ~p~TiSvDLPGm~~~~~~i~v~npfYtvsvD~P 146 (199) T 1s3r_A 114 GKTTISVNLPGLKNGESNLTVENPYYTASVDSP 146 (199) T ss_dssp CCEEEEECCTTCCTTTTEEEESSCEEEEEECCC T ss_pred CCEEEEEECCCCCCCCCCEEECCCEEEEEECCC T ss_conf 865999978887578885686489889985588 No 23 >>2fql_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transport protein; 3.01A {Saccharomyces cerevisiae} (A:) Probab=45.91 E-value=20 Score=16.27 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=4.7 Q ss_pred EEEECCEEEEEE Q ss_conf 385288599997 Q gi|254780621|r 111 ASLENGLLYLEL 122 (157) Q Consensus 111 A~~~nGiLtI~l 122 (157) +.+.+|||+|++ T Consensus 51 ~e~~~gVLti~~ 62 (123) T 2fql_A 51 VELSHGVMTLEI 62 (123) T ss_dssp EECCSSEEEEEE T ss_pred EECCCCEEEEEE T ss_conf 562499799997 No 24 >>3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_H (H:1-79) Probab=45.75 E-value=21 Score=16.26 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=29.3 Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEEE Q ss_conf 021499996217999973033235566213455302304688973866158103852885999974 Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLELL 123 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~lp 123 (157) |+.++|+++++.++|+|.+ |+-.|.|..+..+ ....+++.|.|... T Consensus 8 P~~V~v~i~~~~i~vkGp~-----------------G~ls~~~~~~~~~---~~~~~~~~i~v~~~ 53 (79) T 3jyw_H 8 PEGVTVSIKSRIVKVVGPR-----------------GTLTKNLKHIDVT---FTKVNNQLIKVAVH 53 (79) T ss_dssp CTTCEEEEETTEEEEECSS-----------------CEEEEECCCSSCB---CCCEETTEEEEECS T ss_pred CCCCEEEEECCEEEEECCC-----------------EEEEEEECCCCEE---EEECCCCEEEEEEC T ss_conf 9998999979999998689-----------------8999994588578---99938987999707 No 25 >>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=42.30 E-value=19 Score=16.45 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=14.6 Q ss_pred HHHEEEEEECCEEEEEEE Q ss_conf 021499996217999973 Q gi|254780621|r 58 PSEITIEVDSSILMVRGE 75 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~ 75 (157) |++++|+++++.++|+|. T Consensus 20 P~gV~V~i~~~~itVkGp 37 (100) T 2cql_A 20 PENVDITLKGRTVIVKGP 37 (100) T ss_dssp CSSCEEEEETTEEEEEET T ss_pred CCCCEEEEECCEEEEEEC T ss_conf 999799996999999928 No 26 >>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (E:1-79) Probab=41.36 E-value=22 Score=16.11 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=30.7 Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCC-CCEEEEEEEECCEEEEEEE Q ss_conf 02149999621799997303323556621345530230468897386-6158103852885999974 Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLAD-FVEVMSASLENGLLYLELL 123 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~-~ve~~~A~~~nGiLtI~lp 123 (157) |++++|+++++.++|+|.+ |+- +..||. .+ ....++|.|++... T Consensus 9 P~~V~v~i~~~~i~vkGp~-----------------G~l--~~~~~~~~v---~i~~~~~~i~v~~~ 53 (79) T 1vq8_E 9 PEDVDAEQDHLDITVEGDN-----------------GSV--TRRLWYPDI---DVSVDGDTVVIESD 53 (79) T ss_dssp CTTCEEEEETTEEEEEETT-----------------EEE--EEECCCTTC---EEEEETTEEEEECS T ss_pred CCCCEEEEECCEEEEECCC-----------------EEE--EEEECCCCE---EEEECCCEEEEECC T ss_conf 9997899979999998489-----------------899--999148857---99983988998427 No 27 >>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:1-86) Probab=39.83 E-value=24 Score=15.87 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=14.8 Q ss_pred HHHEEEEEECCEEEEEEE Q ss_conf 021499996217999973 Q gi|254780621|r 58 PSEITIEVDSSILMVRGE 75 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~ 75 (157) |++++|++.++.++|+|. T Consensus 13 P~~V~v~i~~~~i~VkGp 30 (86) T 2zkr_e 13 PENVDITLKGRTVIVKGP 30 (86) T ss_dssp CTTCEEEEETTEEEEEET T ss_pred CCCCEEEEECCEEEEECC T ss_conf 999899998999999949 No 28 >>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} (A:1-108) Probab=38.56 E-value=27 Score=15.57 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=25.2 Q ss_pred CCEEEEEECCCCEEEEEECCCCC-HHHEEEEEE Q ss_conf 84368994899399999701177-021499996 Q gi|254780621|r 35 PPYDIERTGENAYRITIAVSGFH-PSEITIEVD 66 (157) Q Consensus 35 P~~dI~~~~e~~y~i~~~lPG~~-kedi~V~v~ 66 (157) -|+-|.++|++--.+++++|-++ .+||++.+. T Consensus 50 ~pfkvle~dknialvem~ipvyk~ek~ielkls 82 (108) T 3bws_A 50 LPFKVLEMDKNIALVEXAIPVYKDEKEIELKLS 82 (108) T ss_dssp CCEEEEEEETTEEEEEEEEECCCTTCCEEEEEE T ss_pred CCEEEEECCCCCCCCCCCCCEECCCCCEEEEEE T ss_conf 330034300476420025201048551389970 No 29 >>2ks0_A Uncharacterized protein; YABP family, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense} PDB: 3ipf_A (A:) Probab=37.66 E-value=24 Score=15.78 Aligned_cols=26 Identities=38% Similarity=0.658 Sum_probs=21.4 Q ss_pred EECCCCCHHHEEEEEECCEEEEEEEE Q ss_conf 97011770214999962179999730 Q gi|254780621|r 51 IAVSGFHPSEITIEVDSSILMVRGEK 76 (157) Q Consensus 51 ~~lPG~~kedi~V~v~~~~LtI~g~~ 76 (157) .+|--|+.+.|-++.+-+.|+|+|+. T Consensus 13 ~~V~SFD~~~i~LeT~~G~L~IkG~~ 38 (71) T 2ks0_A 13 SKVQSFDPKEILLETIQGVLSIKGEK 38 (71) T ss_dssp EEEEEECSSEEEEEETTEEEEEEEEC T ss_pred EEEEEECCCEEEEEECCEEEEEECCC T ss_conf 88888988579999565089997256 No 30 >>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (E:1-109) Probab=36.72 E-value=23 Score=15.92 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=29.9 Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEEE Q ss_conf 021499996217999973033235566213455302304688973866158103852885999974 Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLELL 123 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~lp 123 (157) |+.++|+++++.++|+|.+- +.+..|+..+. ...++|.+.|... T Consensus 39 P~~V~v~i~~~~i~VkGp~G-------------------~L~~~l~~~v~---i~~~~~~i~v~~~ 82 (109) T 1nkw_E 39 PSGVTVNAQDGVFKVKGPKG-------------------ELTVPYNTELT---VRQDGDQLLVERP 82 (109) T ss_pred CCCCEEEEECCEEEEECCCE-------------------EEEEECCCCEE---EEECCCEEEEECC T ss_conf 99978999799999982884-------------------49998488727---8726878999516 No 31 >>2j01_H 50S ribosomal protein L6; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (H:1-81) Probab=34.13 E-value=21 Score=16.15 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=14.0 Q ss_pred HHHEEEEEECCEEEEEEEE Q ss_conf 0214999962179999730 Q gi|254780621|r 58 PSEITIEVDSSILMVRGEK 76 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~~ 76 (157) |+.++|+++++.++|+|-+ T Consensus 12 P~~V~v~i~~~~i~vkGp~ 30 (81) T 2j01_H 12 PKGVSVEVAPGRVKVKGPK 30 (81) T ss_dssp CTTCEEEECSSCEEEECSS T ss_pred CCCCEEEEECCEEEEECCC T ss_conf 9998899979999998399 No 32 >>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:183-251) Probab=32.72 E-value=25 Score=15.68 Aligned_cols=20 Identities=50% Similarity=0.642 Sum_probs=13.2 Q ss_pred CCCCCEEEEEEEECCEEEEE Q ss_conf 38661581038528859999 Q gi|254780621|r 102 LADFVEVMSASLENGLLYLE 121 (157) Q Consensus 102 Lp~~ve~~~A~~~nGiLtI~ 121 (157) |.|-++..-|+|+|||||.. T Consensus 40 l~dl~e~~~aty~ngiltf~ 59 (69) T 1xmx_A 40 LSDLVEAKIASYENGILTFI 59 (69) T ss_dssp HHHHHHTTSEEEETTEEEES T ss_pred HHHHHHCCCEEECCCEEEEC T ss_conf 99998645425318777725 No 33 >>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (I:1-123) Probab=32.20 E-value=15 Score=17.04 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=29.9 Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEEE Q ss_conf 021499996217999973033235566213455302304688973866158103852885999974 Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLELL 123 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~lp 123 (157) |++++|+++++.++|+|.+- +.+..+|..+.. ...+++.|.|... T Consensus 54 P~~V~V~i~~~~itVkGp~G-------------------~Ls~~~~~~v~~--~~~e~~~i~v~~~ 98 (123) T 3bbo_I 54 PSNVTIALEGQDLKVKGPLG-------------------ELALTYPREVEL--TKEESGFLRVKKT 98 (123) T ss_dssp STTSCEEESSSEEEECCSSC-------------------CEEEECCSSCEE--EECSSSCEEEECS T ss_pred CCCCEEEEECCEEEEECCCE-------------------EEEEEECCCCEE--EEECCCEEEEECC T ss_conf 99988999799999986798-------------------999995787317--8732634887133 No 34 >>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural genomics, PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} (A:1-33,A:320-406) Probab=31.76 E-value=2.2 Score=22.22 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=46.7 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEE Q ss_conf 910341102356786788976454106677788884368994899399999701177021499996217999973 Q gi|254780621|r 1 MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGE 75 (157) Q Consensus 1 m~~~~~~~~~~~~gfD~~f~~~~~~~~~~~~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~ 75 (157) |+|....+..-|--..+.++...-..-....+..|-+-|+-..+..=.+.+.++|++.+++--.++..-+.+++- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IpgV~i~g~~~r~~ivsf~v~gi~~~~i~~~L~~~gI~vsaG 75 (120) T 1kmj_A 1 MIFSVDKVRADFPVLSREVNGLPLAYLDSAASAVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTG 75 (120) T ss_dssp -CCCHHHHHHTCGGGGCEETTEECEECCTTTCCSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEE T ss_pred CCCCHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECC T ss_conf 998889998758200567089984997382006896352588666757999738989999999997789599756 No 35 >>3i1n_G 50S ribosomal protein L6; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_G 3e1b_3 3e1d_3 1vs6_G 3i1p_G 3i1r_G 3i1t_G 3i20_G 3i22_G 2qam_G* 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* ... (G:1-81) Probab=20.74 E-value=24 Score=15.78 Aligned_cols=43 Identities=16% Similarity=0.374 Sum_probs=26.2 Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEE Q ss_conf 02149999621799997303323556621345530230468897386615810385288599997 Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLEL 122 (157) Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~l 122 (157) |+.++|+++++.++|+|.+-. .++.|+..+. ...+++-+.+.. T Consensus 12 P~gV~v~i~~~~i~vkGp~G~-------------------l~~~~~~~i~---~~~~~~~i~v~~ 54 (81) T 3i1n_G 12 PAGVDVKINGQVITIKGKNGE-------------------LTRTLNDAVE---VKHADNTLTFGP 54 (81) T ss_dssp CTTCCCEEETTEEECCCSSSC-------------------CCEEECSSCE---EECCTTSCEEEC T ss_pred CCCCEEEEECCEEEEECCCEE-------------------EEEEEECCEE---EEECCCEEEEEE T ss_conf 999899997999999919988-------------------9999834368---996586899982 No 36 >>1pfo_A Perfringolysin O, PFO; toxin, thiol-activated cytolysin, hemolysis, cytolysis; 2.20A {Clostridium perfringens} (A:1-49,A:91-171,A:230-275,A:356-370) Probab=20.28 E-value=46 Score=14.09 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.1 Q ss_pred CCEEEEEECCCCCHHH Q ss_conf 9399999701177021 Q gi|254780621|r 45 NAYRITIAVSGFHPSE 60 (157) Q Consensus 45 ~~y~i~~~lPG~~ked 60 (157) .-..|.++|||+.+++ T Consensus 86 ~PltiSIDLPGm~~en 101 (191) T 1pfo_A 86 KPININIDLPGLKGEN 101 (191) T ss_dssp CCEEEEECCTTCTTSC T ss_pred CCEEEEEECCCCCCCC T ss_conf 8769999778888888 Done!