Query         gi|254780621|ref|YP_003065034.1| small heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 157
No_of_seqs    114 out of 2566
Neff          6.6 
Searched_HMMs 33803
Date          Wed Jun  1 15:08:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780621.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1shs_A Small heat shock prote  99.9 2.7E-24 7.9E-29  170.2  12.6  121   15-138    15-147 (147)
  2 >1gme_A Heat shock protein 16.  99.9 2.3E-21 6.8E-26  152.1  10.9  107   31-138     4-114 (115)
  3 >3gla_A Low molecular weight h  99.8 1.1E-19 3.1E-24  141.8  12.4   95   32-127     2-99  (100)
  4 >2wj5_A Heat shock protein bet  99.8 5.2E-20 1.5E-24  143.7   9.0   97   35-138     2-101 (101)
  5 >2bol_A TSP36, small heat shoc  99.8 2.4E-18   7E-23  133.4   7.8   87   33-127     7-96  (96)
  6 >3igf_A ALL4481 protein; two-d  99.5   8E-14 2.4E-18  105.4   9.6   69   39-127     3-74  (77)
  7 >2jki_S SGT1-like protein, cyt  98.2 8.4E-06 2.5E-10   55.8   8.8   79   35-128     2-82  (90)
  8 >2wj7_A Alpha-crystallin B cha  98.2 3.3E-06 9.7E-11   58.3   6.2   44   57-106     1-44  (44)
  9 >2bol_A TSP36, small heat shoc  98.0 7.1E-05 2.1E-09   50.0   9.4   83   35-123    66-156 (159)
 10 >1rl1_A Suppressor of G2 allel  97.7 0.00031   9E-09   46.1   8.7   83   31-128     6-90  (114)
 11 >1wh0_A Ubiquitin carboxyl-ter  97.3  0.0032 9.4E-08   39.8   9.4   93   33-128    18-113 (134)
 12 >2o30_A Nuclear movement prote  96.9   0.026 7.8E-07   34.1  11.2   76   34-128     4-82  (131)
 13 >1x5m_A Calcyclin-binding prot  96.2   0.075 2.2E-06   31.3   9.9   82   34-129    20-106 (127)
 14 >3eud_A Protein SHQ1; CS domai  95.7    0.16 4.7E-06   29.3   9.5   79   31-129    14-99  (115)
 15 >1wfi_A Nuclear distribution g  95.0    0.16 4.6E-06   29.4   7.8   80   32-129     5-90  (131)
 16 >2cr0_A Nuclear migration prot  93.3    0.45 1.3E-05   26.5   7.2   79   33-129    16-100 (121)
 17 >2k8q_A Protein SHQ1; beta-san  92.8    0.49 1.5E-05   26.3   6.8   77   33-129     2-85  (134)
 18 >2kmw_A Uncharacterized protei  90.9    0.72 2.1E-05   25.2   5.9   79   34-128     4-83  (150)
 19 >2wj7_A Alpha-crystallin B cha  60.4      12 0.00035   17.7   5.5   36   43-78      8-44  (50)
 20 >1ew4_A CYAY protein; friedrei  55.1      11 0.00034   17.8   3.0   12  111-122    32-43  (106)
 21 >1rl6_A Protein (ribosomal pro  50.9      17  0.0005   16.8   6.3   43   58-122    11-53  (80)
 22 >1s3r_A Intermedilysin; toxin;  47.1      20 0.00058   16.4   3.3   33   45-77    114-146 (199)
 23 >2fql_A Frataxin homolog, mito  45.9      20  0.0006   16.3   3.3   12  111-122    51-62  (123)
 24 >3jyw_H 60S ribosomal protein   45.8      21 0.00061   16.3   5.1   46   58-123     8-53  (79)
 25 >2cql_A OK/SW-CL.103, 60S ribo  42.3      19 0.00056   16.5   2.5   18   58-75     20-37  (100)
 26 >1vq8_E 50S ribosomal protein   41.4      22 0.00064   16.1   2.7   44   58-123     9-53  (79)
 27 >2zkr_e 60S ribosomal protein   39.8      24  0.0007   15.9   2.7   18   58-75     13-30  (86)
 28 >3bws_A Protein LP49; two-doma  38.6      27 0.00078   15.6   4.3   32   35-66     50-82  (108)
 29 >2ks0_A Uncharacterized protei  37.7      24 0.00072   15.8   2.5   26   51-76     13-38  (71)
 30 >1nkw_E 50S ribosomal protein   36.7      23 0.00069   15.9   2.3   44   58-123    39-82  (109)
 31 >2j01_H 50S ribosomal protein   34.1      21 0.00063   16.2   1.7   19   58-76     12-30  (81)
 32 >1xmx_A Hypothetical protein V  32.7      25 0.00075   15.7   1.9   20  102-121    40-59  (69)
 33 >3bbo_I Ribosomal protein L6;   32.2      15 0.00045   17.0   0.7   45   58-123    54-98  (123)
 34 >1kmj_A Selenocysteine lyase;   31.8     2.2 6.6E-05   22.2  -3.6   75    1-75      1-75  (120)
 35 >3i1n_G 50S ribosomal protein   20.7      24 0.00072   15.8   0.0   43   58-122    12-54  (81)
 36 >1pfo_A Perfringolysin O, PFO;  20.3      46  0.0014   14.1   1.3   16   45-60     86-101 (191)

No 1  
>>1shs_A Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii} (A:)
Probab=99.92  E-value=2.7e-24  Score=170.20  Aligned_cols=121  Identities=16%  Similarity=0.207  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHC--------CCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCC--CCCCC
Q ss_conf             6788976454106--------6777888843689948993999997011770214999962179999730332--35566
Q gi|254780621|r   15 YDTVLSMLDGLGA--------PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSE--EKETV   84 (157)
Q Consensus        15 fD~~f~~~~~~~~--------~~~~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~--~~~~~   84 (157)
                      ||++++.++....        .....+.|++||+++ +++|.|.++|||++++||+|+++++.|+|+|++...  +....
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~di~e~-~~~~~i~~~lPG~~~edi~V~~~~~~l~i~~~~~~~~~~~~~~   93 (147)
T 1shs_A           15 FKEFFATPMTGTTMIQSSTGIQISGKGFMPISIIEG-DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER   93 (147)
T ss_dssp             ------------------CCCEEEEESCCCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCE
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCEEEEEEECCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCE
T ss_conf             887641423244333543332346678883789984-9979999988998422499998588899999962334214650


Q ss_pred             CEEEEEEECCEEEEEEECCCCCEEE--EEEEECCEEEEEEECCCCHHHCCEEEEEC
Q ss_conf             2134553023046889738661581--03852885999974068601187288733
Q gi|254780621|r   85 EYLHRGIAKRAFERRFQLADFVEVM--SASLENGLLYLELLRSVPERMKPRRIEIS  138 (157)
Q Consensus        85 ~~~~~e~~~~~F~R~f~Lp~~ve~~--~A~~~nGiLtI~lpK~~pe~~~~r~I~I~  138 (157)
                      +++++|+.+|+|.|+|.||++++..  +|+|+||||+|++||.  +..++|+|+|.
T Consensus        94 ~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~ipK~--~~~~~~~I~Iq  147 (147)
T 1shs_A           94 IIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKA--ESSIKKGINIE  147 (147)
T ss_dssp             EEEECSCCCCEEEEEEECSSCBCGGGCEEEEETTEEEEEEEBC--GGGCCEECCCC
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEEEC--CCCCCCEEEEC
T ss_conf             6864000257538999898881124339999899999999826--77898026609


No 2  
>>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} (A:37-151)
Probab=99.86  E-value=2.3e-21  Score=152.06  Aligned_cols=107  Identities=23%  Similarity=0.337  Sum_probs=89.8

Q ss_pred             CCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEE-CC-CCCCCCCEEEEEEECCEEEEEEECCCCCEE
Q ss_conf             7888843689948993999997011770214999962179999730-33-235566213455302304688973866158
Q gi|254780621|r   31 TSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEK-KS-EEKETVEYLHRGIAKRAFERRFQLADFVEV  108 (157)
Q Consensus        31 ~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~-~~-~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~  108 (157)
                      ..+.|++||+++ +++|.|.++|||++++||+|++.++.|.|.+.+ .. ...+...++.+|+.+|.|.|+|.||++++.
T Consensus         4 ~~~~P~~di~e~-~~~~~i~~~lPG~~~edi~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~   82 (115)
T 1gme_A            4 AFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKV   82 (115)
T ss_dssp             HHGGGCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCG
T ss_pred             CCCCCCEEEEEC-CCEEEEEEECCCCCHHHEEEEEECCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCEEE
T ss_conf             557786068988-9879999999999867689999559989999898204544421267775301129999999977572


Q ss_pred             E--EEEEECCEEEEEEECCCCHHHCCEEEEEC
Q ss_conf             1--03852885999974068601187288733
Q gi|254780621|r  109 M--SASLENGLLYLELLRSVPERMKPRRIEIS  138 (157)
Q Consensus       109 ~--~A~~~nGiLtI~lpK~~pe~~~~r~I~I~  138 (157)
                      .  +|+|+||+|+|++||..+...+.++|+|+
T Consensus        83 ~~i~A~~~~GiL~I~ipk~~~~~~~~~~I~Ie  114 (115)
T 1gme_A           83 EEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS  114 (115)
T ss_dssp             GGCEEEEETTEEEEEEECCCCCTTCCCCCCCC
T ss_pred             CCEEEEEECCEEEEEEECCCCCCCCCEEEEEC
T ss_conf             32199988999999997067677886698606


No 3  
>>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} (A:)
Probab=99.83  E-value=1.1e-19  Score=141.77  Aligned_cols=95  Identities=31%  Similarity=0.504  Sum_probs=83.2

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCC-CCCCCCEEEEEEECCEEEEEEECCCCCEE--
Q ss_conf             888843689948993999997011770214999962179999730332-35566213455302304688973866158--
Q gi|254780621|r   32 SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSE-EKETVEYLHRGIAKRAFERRFQLADFVEV--  108 (157)
Q Consensus        32 ~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~-~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~--  108 (157)
                      .+.|++||+++ +++|+|.++|||++++||+|.++++.|+|+|++... ..+...++..++.+|.|.|+|.||++++.  
T Consensus         2 ~~~P~~di~e~-~d~~~i~~~lPG~~~e~i~i~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~   80 (100)
T 3gla_A            2 QWVPRVDIKEE-VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADG   80 (100)
T ss_dssp             CSCCCEEEEEC-SSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTS
T ss_pred             CCCCCEEEEEC-CCEEEEEEECCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCC
T ss_conf             86885489997-99799999979994253999997236999986600136677459986550666999999998701453


Q ss_pred             EEEEEECCEEEEEEECCCC
Q ss_conf             1038528859999740686
Q gi|254780621|r  109 MSASLENGLLYLELLRSVP  127 (157)
Q Consensus       109 ~~A~~~nGiLtI~lpK~~p  127 (157)
                      ++|+|+||+|+|++||..+
T Consensus        81 i~A~~~nGiL~I~~PK~~~   99 (100)
T 3gla_A           81 ITAAGRNGVLEIRIPKRPA   99 (100)
T ss_dssp             CEEEEETTEEEEEEEBC--
T ss_pred             EEEEEECCEEEEEEECCCC
T ss_conf             0999989999999813678


No 4  
>>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} (A:)
Probab=99.82  E-value=5.2e-20  Score=143.69  Aligned_cols=97  Identities=20%  Similarity=0.363  Sum_probs=84.2

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE--EEEE
Q ss_conf             84368994899399999701177021499996217999973033235566213455302304688973866158--1038
Q gi|254780621|r   35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV--MSAS  112 (157)
Q Consensus        35 P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~--~~A~  112 (157)
                      |++||+++ +++|.|.++||||+++||+|+++++.|+|+|+++.....+      ++.+|.|.|+|.||.+++.  .+|+
T Consensus         2 P~~di~e~-~~~~~i~~~lpG~~~edi~v~v~~~~l~i~~~~~~~~~~~------~~~~~~f~r~~~lP~~vd~~~i~A~   74 (101)
T 2wj5_A            2 AMAQVPTD-PGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEH------GFIAREFHRRYRLPPGVDPAAVTSA   74 (101)
T ss_dssp             CCCCCCCC-SSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTT------CCEEEEEEEEEECCTTBCTTCCEEE
T ss_pred             CCCEEEEC-CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEEEECCCC------CEEEEEEEEEEECCCCCCHHHEEEE
T ss_conf             84548375-9989999999999879929999899899999983352789------7499989999983346894676999


Q ss_pred             E-ECCEEEEEEECCCCHHHCCEEEEEC
Q ss_conf             5-2885999974068601187288733
Q gi|254780621|r  113 L-ENGLLYLELLRSVPERMKPRRIEIS  138 (157)
Q Consensus       113 ~-~nGiLtI~lpK~~pe~~~~r~I~I~  138 (157)
                      | +||+|+|++||..+++.++++|+|.
T Consensus        75 ~~~dGvL~I~~PK~~~~~~~~~~I~Ie  101 (101)
T 2wj5_A           75 LSPEGVLSIQATPASAQASLPSPPAAK  101 (101)
T ss_dssp             ECTTSEEEEEECBCCCCCSSCC-----
T ss_pred             ECCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             889978999987787544589798899


No 5  
>>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} (A:95-190)
Probab=99.75  E-value=2.4e-18  Score=133.42  Aligned_cols=87  Identities=21%  Similarity=0.265  Sum_probs=73.9

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE--EE
Q ss_conf             8884368994899399999701177021499996217999973033235566213455302304688973866158--10
Q gi|254780621|r   33 AYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV--MS  110 (157)
Q Consensus        33 ~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~--~~  110 (157)
                      +-|++||+++ +++|.|.++||||+++||+|+++++.|+|.|+++....       .++.+|+|.|+|.||++++.  .+
T Consensus         7 ~~p~~di~e~-~~~~~i~~~lPG~~~edi~v~~~~~~l~i~~~~~~~~~-------~~~~~~~f~r~~~LP~~vd~~~i~   78 (96)
T 2bol_A            7 KDAYEVGKDG-RLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACG-------DAAMSESVGRSIPLPPSVDRNHIQ   78 (96)
T ss_dssp             GGCEEECTTS-SEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTT-------CCCBCCCEEEEEECCTTBCGGGCE
T ss_pred             HHHHHCCCCC-CEEEEEEEECCCCCHHHCEEEEECCEEEEEEEEEEECC-------CCEEEEEEEEEEECCCCCCHHHEE
T ss_conf             3054436788-62599999999997567199999999999999801278-------988999999999898764744779


Q ss_pred             EEE-ECCEEEEEEECCCC
Q ss_conf             385-28859999740686
Q gi|254780621|r  111 ASL-ENGLLYLELLRSVP  127 (157)
Q Consensus       111 A~~-~nGiLtI~lpK~~p  127 (157)
                      |+| +||||+|++||..|
T Consensus        79 A~~~~nGvL~I~~pK~~P   96 (96)
T 2bol_A           79 ATITTDDVLVIEAPVNEP   96 (96)
T ss_dssp             EEECSSSEEEEEEEBSSC
T ss_pred             EEECCCCEEEEEECCCCC
T ss_conf             997689759999678887


No 6  
>>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:298-374)
Probab=99.52  E-value=8e-14  Score=105.40  Aligned_cols=69  Identities=14%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             EEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCC---EEEEEEEEC
Q ss_conf             89948993999997011770214999962179999730332355662134553023046889738661---581038528
Q gi|254780621|r   39 IERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFV---EVMSASLEN  115 (157)
Q Consensus        39 I~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~v---e~~~A~~~n  115 (157)
                      |.++ +++|.|.++|||++++||+|++.++.|+|++                   |+|+|+|.||..+   ++.+|+|+|
T Consensus         3 I~e~-~~~~~v~~~lPgv~~edi~V~~~~~~L~I~~-------------------g~~~R~i~LP~~i~~~~i~~A~~~~   62 (77)
T 3igf_A            3 ITID-THNRQVRLFLPGFDKKQVKLTQYGPEVTVEA-------------------GDQRRNIFLPPALSGRPITGAKFQN   62 (77)
T ss_dssp             EEEE-TTTTEEEEECTTCCGGGCEEEEETTEEEEEE-------------------TTEEEEEECCTTTTTCCEEEEEEET
T ss_pred             EEEC-CCCEEEEEECCCCCHHHCEEEEECCEEEEEE-------------------CCEECCCCCCHHHCCCCCCCEEEEC
T ss_conf             5884-8955999989998767717999898899998-------------------9998033498788278665249989


Q ss_pred             CEEEEEEECCCC
Q ss_conf             859999740686
Q gi|254780621|r  116 GLLYLELLRSVP  127 (157)
Q Consensus       116 GiLtI~lpK~~p  127 (157)
                      |+|+|++||..+
T Consensus        63 GvL~I~~pK~~~   74 (77)
T 3igf_A           63 NYLIISFLEHHH   74 (77)
T ss_dssp             TEEEEEECCC--
T ss_pred             CEEEEEEEECCC
T ss_conf             989999984256


No 7  
>>2jki_S SGT1-like protein, cytosolic heat shock protein 90; HSP90 SGT1, stress response, chaperone; HET: ADP; 3.3A {Arabidopsis thaliana} (S:)
Probab=98.23  E-value=8.4e-06  Score=55.77  Aligned_cols=79  Identities=14%  Similarity=0.057  Sum_probs=64.2

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE--EEE
Q ss_conf             843689948993999997011770214999962179999730332355662134553023046889738661581--038
Q gi|254780621|r   35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM--SAS  112 (157)
Q Consensus        35 P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~--~A~  112 (157)
                      |.|+-++++ +...|.+.+||+.++|+.|++.++.|+|++.....              ..|...+.|...|++.  .++
T Consensus         2 p~~~W~Qt~-~~V~i~i~~~~v~~~di~v~~~~~~l~i~~~~~~~--------------~~~~~~~~L~~~I~~~~s~~~   66 (90)
T 2jki_S            2 YRHEYYQKP-EEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGE--------------DAYYLQPRLFGKIIPDKCKYE   66 (90)
T ss_dssp             CEEEEEECS-SEEEEEEECTTCCGGGEEEEECSSBEEEEECCSSS--------------CCEEECCBBSSCBCGGGCEEE
T ss_pred             CCCCEEECC-CEEEEEEEECCCCHHHEEEECCCCEEEEEEECCCC--------------CEEEEEEECCCCCCCHHCEEE
T ss_conf             652479489-98999999554487886998479889999863689--------------388886013464252245999


Q ss_pred             EECCEEEEEEECCCCH
Q ss_conf             5288599997406860
Q gi|254780621|r  113 LENGLLYLELLRSVPE  128 (157)
Q Consensus       113 ~~nGiLtI~lpK~~pe  128 (157)
                      +.+|.|.|+|+|..++
T Consensus        67 ~~~~~i~i~L~K~~~~   82 (90)
T 2jki_S           67 VLSTKIEICLAKADII   82 (90)
T ss_dssp             ECSSCEEEEEEBSSSC
T ss_pred             EECCEEEEEEEECCCC
T ss_conf             9599999999989999


No 8  
>>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:22-65)
Probab=98.21  E-value=3.3e-06  Score=58.31  Aligned_cols=44  Identities=25%  Similarity=0.584  Sum_probs=38.2

Q ss_pred             CHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCC
Q ss_conf             70214999962179999730332355662134553023046889738661
Q gi|254780621|r   57 HPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFV  106 (157)
Q Consensus        57 ~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~v  106 (157)
                      +|+||+|.+.++.|.|+|+++...+++      |+..|+|.|+|.||++|
T Consensus         1 sPeei~Vkv~~~~l~V~gkHeek~d~~------g~v~r~F~R~y~LP~~V   44 (44)
T 2wj7_A            1 SPEELKVKVLGDVIEVHGKHEERQDEH------GFISREFHRKYRIPADV   44 (44)
T ss_dssp             CGGGEEEEEETTEEEEEEEECCCBCSS------SEEEEEEEEEEECCTTC
T ss_pred             CHHHEEEEEECCEEEEEEEEEEECCCC------CEEEEEEEEEEECCCCC
T ss_conf             879969999899899999986752678------67998688888387633


No 9  
>>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} (A:60-94,A:191-314)
Probab=97.98  E-value=7.1e-05  Score=50.03  Aligned_cols=83  Identities=18%  Similarity=0.378  Sum_probs=63.2

Q ss_pred             CCEEEEEECCCCEEEEEEC---CCCCHHHEEEEEECCEEE---EEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE
Q ss_conf             8436899489939999970---117702149999621799---9973033235566213455302304688973866158
Q gi|254780621|r   35 PPYDIERTGENAYRITIAV---SGFHPSEITIEVDSSILM---VRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV  108 (157)
Q Consensus        35 P~~dI~~~~e~~y~i~~~l---PG~~kedi~V~v~~~~Lt---I~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~  108 (157)
                      +-.-|.+.++.+-.|++++   |-|+++|+.|.+..|.|.   |+|+++..+....      -+++.|..+|.+|+-++.
T Consensus        66 ~GlTIi~~e~ggk~iHvEi~vDP~ykp~Dlci~vd~nri~~~~VsGk~~k~~n~s~------s~~~EFs~sy~iPe~vdp  139 (159)
T 2bol_A           66 EGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASH------SEHREFYKAFVTPEVVDA  139 (159)
T ss_dssp             CEEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------------CEEEEEEEECSSEECG
T ss_pred             CCCCEEECCCCCEEEEEEEECCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCE------EEEEEEEEEEECCCCCCH
T ss_conf             78755652678768999983299977699099999999999999844234577668------999999999789887385


Q ss_pred             E--EEEEECCEEEEEEE
Q ss_conf             1--03852885999974
Q gi|254780621|r  109 M--SASLENGLLYLELL  123 (157)
Q Consensus       109 ~--~A~~~nGiLtI~lp  123 (157)
                      .  .|.+-+|.|.|..|
T Consensus       140 ssv~AqlVdntlVlEAP  156 (159)
T 2bol_A          140 SKTQAEIVDGLMVVEAP  156 (159)
T ss_dssp             GGCEEEEETTEEEEEEE
T ss_pred             HHEEEEEECCEEEEEEE
T ss_conf             24599987999999975


No 10 
>>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} (A:)
Probab=97.69  E-value=0.00031  Score=46.12  Aligned_cols=83  Identities=12%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE-
Q ss_conf             7888843689948993999997011770214999962179999730332355662134553023046889738661581-
Q gi|254780621|r   31 TSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM-  109 (157)
Q Consensus        31 ~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~-  109 (157)
                      ....|+|+-+++++ ...|.+.+||+.++++.|++.++.|.|...-..    +          ..|...+.|...|++. 
T Consensus         6 ~~~~~~~~W~Qt~~-~V~i~i~~~~~~~~~v~v~~~~~~~~v~~~~~~----~----------~~~~~~~~L~~~I~~~~   70 (114)
T 1rl1_A            6 HQSKIKYDWYQTES-QVVITLMIKNVQKNDVNVEFSEKELSALVKLPS----G----------EDYNLKLELLHPIIPEQ   70 (114)
T ss_dssp             --CCCCEEEEECSS-EEEEEECCCSCCGGGEEEECSSSCEEEEEECTT----S----------SEEEEEECBSSCCCGGG
T ss_pred             CCCCCCEEEEECCC-EEEEEEEECCCCHHHEEEEEECCEEEEEEECCC----C----------CEEEEEEECCCCCCCCC
T ss_conf             68998761897899-999999938998423499995488999997789----9----------47999866455066521


Q ss_pred             -EEEEECCEEEEEEECCCCH
Q ss_conf             -0385288599997406860
Q gi|254780621|r  110 -SASLENGLLYLELLRSVPE  128 (157)
Q Consensus       110 -~A~~~nGiLtI~lpK~~pe  128 (157)
                       +..+.+|.+.|+|.|..|.
T Consensus        71 s~~~~~~~~i~i~L~K~~~~   90 (114)
T 1rl1_A           71 STFKVLSTKIEIKLKKPEAV   90 (114)
T ss_dssp             EEEEECSSSEEEEEECSSCC
T ss_pred             EEEEECCCEEEEEEECCCCC
T ss_conf             09998299999999847999


No 11 
>>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:)
Probab=97.27  E-value=0.0032  Score=39.83  Aligned_cols=93  Identities=11%  Similarity=0.108  Sum_probs=68.4

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEE-EEECCEEEEEEECCCCCEEEE-
Q ss_conf             888436899489939999970117702149999621799997303323556621345-530230468897386615810-
Q gi|254780621|r   33 AYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHR-GIAKRAFERRFQLADFVEVMS-  110 (157)
Q Consensus        33 ~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~-e~~~~~F~R~f~Lp~~ve~~~-  110 (157)
                      ..|.|+=++++++...|.+-++|+.++|+.|++..+.|.|+..-......   .++. ......|...+.|-..|.+.. 
T Consensus        18 ~~~~~~W~Qt~~~~V~i~i~~k~v~~~~v~v~~~~~~l~v~~~~~~~~~~---~~~~~~~~~~~y~~~~~L~~~I~pe~s   94 (134)
T 1wh0_A           18 AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFL---RLHPGCGPHTTFRWQVKLRNLIEPEQC   94 (134)
T ss_dssp             SCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHH---HHSTTCCTTSCEEEEEEBSSCEEEEEE
T ss_pred             CCCCCCCEECCCCEEEEEEEECCCCCHHEEEEEECCEEEEEEECCCCCCE---EECCCCCCCEEEEEECCCCCCCCCHHC
T ss_conf             00244516438978999999588762034899857989999887888630---112366766057872213451660154


Q ss_pred             -EEEECCEEEEEEECCCCH
Q ss_conf             -385288599997406860
Q gi|254780621|r  111 -ASLENGLLYLELLRSVPE  128 (157)
Q Consensus       111 -A~~~nGiLtI~lpK~~pe  128 (157)
                       .++.++-|.|+|.|..+.
T Consensus        95 ~~~i~~~kiei~L~K~~~~  113 (134)
T 1wh0_A           95 TFCFTASRIDICLRKRQSQ  113 (134)
T ss_dssp             EEEECSSEEEEEEEESSSC
T ss_pred             EEEECCCEEEEEEEECCCC
T ss_conf             8997899899999978999


No 12 
>>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.66A {Encephalitozoon cuniculi gb-m1} (A:)
Probab=96.89  E-value=0.026  Score=34.13  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             CCCEEEEEECCCCEEEEEECC-CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEE--
Q ss_conf             884368994899399999701-17702149999621799997303323556621345530230468897386615810--
Q gi|254780621|r   34 YPPYDIERTGENAYRITIAVS-GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMS--  110 (157)
Q Consensus        34 ~P~~dI~~~~e~~y~i~~~lP-G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~--  110 (157)
                      .|+|+=+++++ ...|.+-|| |+.++||.|.+..+.|+|++.                  +.+.-...|...|++..  
T Consensus         4 ~~~y~W~Qt~~-~V~i~i~l~~~~~~~dv~v~~~~~~l~v~~~------------------~~~~~~~~L~~~I~~~~s~   64 (131)
T 2o30_A            4 EAKYTWDQELN-EINIQFPVTGDADSSAIKIRXVGKKICVKNQ------------------GEIVIDGELLHEVDVSSLW   64 (131)
T ss_dssp             -CCCEEEEETT-EEEEEEECC---CCSCEEEEEETTEEEEEET------------------TEEEEEEEBSSCEEEEEEE
T ss_pred             CCCEEEEEECC-EEEEEEECCCCCCCCEEEEEEEEEEEEECCC------------------CCEEEECCCCCCCCCCCCE
T ss_conf             88777995589-9999999389972234999985727663468------------------8148706026733355778


Q ss_pred             EEEECCEEEEEEECCCCH
Q ss_conf             385288599997406860
Q gi|254780621|r  111 ASLENGLLYLELLRSVPE  128 (157)
Q Consensus       111 A~~~nGiLtI~lpK~~pe  128 (157)
                      .++.++.|.|+|.|..+.
T Consensus        65 ~~i~~~~i~i~L~K~~~~   82 (131)
T 2o30_A           65 WVINGDVVDVNVTKKRNE   82 (131)
T ss_dssp             EEEETTEEEEEEEESSCC
T ss_pred             EEEECCEEEEEEEECCCC
T ss_conf             998099999999956888


No 13 
>>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=96.21  E-value=0.075  Score=31.35  Aligned_cols=82  Identities=10%  Similarity=0.117  Sum_probs=59.3

Q ss_pred             CCCEEEEEECCCCEEEEEECCCC---CHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE-
Q ss_conf             88436899489939999970117---70214999962179999730332355662134553023046889738661581-
Q gi|254780621|r   34 YPPYDIERTGENAYRITIAVSGF---HPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM-  109 (157)
Q Consensus        34 ~P~~dI~~~~e~~y~i~~~lPG~---~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~-  109 (157)
                      .|.|+=+++++ ...|.+.|||.   .++||.|.+..+.|.|+..-....             ..+.....|...|++. 
T Consensus        20 ~~~~~W~Qt~~-~V~i~i~l~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~-------------~~~~~~~~L~~~I~~~~   85 (127)
T 1x5m_A           20 ISNYGWDQSDK-FVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGK-------------SYSMIVNNLLKPISVEG   85 (127)
T ss_dssp             CCSCEEEEETT-EEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSS-------------CEEEEEECBSSCCCTTT
T ss_pred             CCEEEEEECCC-EEEEEEECCCCCCCCHHHEEEEEECCEEEEEEECCCCC-------------CEEEEHHHHHHHCCHHH
T ss_conf             25078994799-89999988875677744869997279999999747996-------------03777467430135523


Q ss_pred             -EEEEECCEEEEEEECCCCHH
Q ss_conf             -03852885999974068601
Q gi|254780621|r  110 -SASLENGLLYLELLRSVPER  129 (157)
Q Consensus       110 -~A~~~nGiLtI~lpK~~pe~  129 (157)
                       .-++.++-|.|+|.|..+..
T Consensus        86 s~~~i~~~~i~i~L~K~~~~~  106 (127)
T 1x5m_A           86 SSKKVKTDTVLILCRKKVENT  106 (127)
T ss_dssp             CEEEEETTEEEEEEECSSSSC
T ss_pred             CEEEECCCEEEEEEEECCCCC
T ss_conf             303762877999996627788


No 14 
>>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} (A:)
Probab=95.66  E-value=0.16  Score=29.30  Aligned_cols=79  Identities=10%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             CCCCCCEEEEEECCCCEEEEEECCCCC--HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE
Q ss_conf             788884368994899399999701177--021499996217999973033235566213455302304688973866158
Q gi|254780621|r   31 TSAYPPYDIERTGENAYRITIAVSGFH--PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV  108 (157)
Q Consensus        31 ~~~~P~~dI~~~~e~~y~i~~~lPG~~--kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~  108 (157)
                      ...+|.+.|.++ ++...|.+-+|-+.  ..++++.++++..+.-.                   .-|-.+..||..+..
T Consensus        14 ~~ITP~F~itQD-d~fv~I~I~~P~vr~s~~~~Ei~id~~~F~F~~-------------------~PYyLRL~lp~~ive   73 (115)
T 3eud_A           14 KXITPRFSITQD-EEFIFLKIFISNIRFSAVGLEIIIQENXIIFHL-------------------SPYYLRLRFPHELID   73 (115)
T ss_dssp             CCBCCCEEEEEC-SSEEEEEEECCSCCCCSSSCEEEEETTEEEEEE-------------------TTEEEEEECSSCEEC
T ss_pred             CEECCEEEEEEC-CCEEEEEEEECCCCCCCCCEEEEECCCEEEEEC-------------------CCCEEEEECCCCEEC
T ss_conf             778750898868-998999999363002677618997488999963-------------------660699817972661


Q ss_pred             ---EEEEE--ECCEEEEEEECCCCHH
Q ss_conf             ---10385--2885999974068601
Q gi|254780621|r  109 ---MSASL--ENGLLYLELLRSVPER  129 (157)
Q Consensus       109 ---~~A~~--~nGiLtI~lpK~~pe~  129 (157)
                         .+|+|  +.|.++|+|||..|-+
T Consensus        74 d~~~~asYd~~~g~~tv~lpKe~~GE   99 (115)
T 3eud_A           74 DERSTAQYDSKDECINVKVAKLNKNE   99 (115)
T ss_dssp             STTCEEEEETTTTEEEEEEEESSTTC
T ss_pred             CCCCEEEEECCCCEEEEEEECCCCCC
T ss_conf             88733889776658999980776898


No 15 
>>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} (A:)
Probab=95.03  E-value=0.16  Score=29.36  Aligned_cols=80  Identities=15%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             CCCCCEEEEEECCCCEEEEEECC---CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE
Q ss_conf             88884368994899399999701---177021499996217999973033235566213455302304688973866158
Q gi|254780621|r   32 SAYPPYDIERTGENAYRITIAVS---GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV  108 (157)
Q Consensus        32 ~~~P~~dI~~~~e~~y~i~~~lP---G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~  108 (157)
                      ...|.|.=.++.+ ...|.+.++   |+.++||+|.+.+..|.++.....-                 .-...|...|++
T Consensus         5 ~~~p~y~W~Qt~~-~V~i~i~l~~~~~~~~~di~v~~~~~~l~~~~~~~~~-----------------~~~~~L~~~I~~   66 (131)
T 1wfi_A            5 SSGPNYRWTQTLA-ELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPP-----------------VVDGELYNEVKV   66 (131)
T ss_dssp             SSCCSSEEEECSS-EEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCC-----------------SBCSCBSSCBCS
T ss_pred             CCCCCEEEEEECC-EEEEEEECCCCCCCCHHHEEEEEECCEEEEEECCCEE-----------------EECCCCCCCCCC
T ss_conf             6689857884589-8999997579999530037999736989999889704-----------------761724574054


Q ss_pred             E--EEEEEC-CEEEEEEECCCCHH
Q ss_conf             1--038528-85999974068601
Q gi|254780621|r  109 M--SASLEN-GLLYLELLRSVPER  129 (157)
Q Consensus       109 ~--~A~~~n-GiLtI~lpK~~pe~  129 (157)
                      .  ...+.+ ++|.|+|.|..|..
T Consensus        67 ~~s~~~i~~~~~l~i~L~K~~~~~   90 (131)
T 1wfi_A           67 EESSWLIEDGKVVTVHLEKINKME   90 (131)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSSCC
T ss_pred             CCCEEEEECCCEEEEEEEECCCCC
T ss_conf             533799957999999999587887


No 16 
>>2cr0_A Nuclear migration protein NUDC; CS domain, beta sandwich, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=93.30  E-value=0.45  Score=26.53  Aligned_cols=79  Identities=13%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             CCCCEEEEEECCCCEEEEEECC---CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEE
Q ss_conf             8884368994899399999701---1770214999962179999730332355662134553023046889738661581
Q gi|254780621|r   33 AYPPYDIERTGENAYRITIAVS---GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVM  109 (157)
Q Consensus        33 ~~P~~dI~~~~e~~y~i~~~lP---G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~  109 (157)
                      ..|.|.=.++. +...|.+.+|   |++++||+|.+..+.|.|+..-.       .          |.....|-..|++.
T Consensus        16 ~~~~y~W~Qt~-~~V~i~i~~~~~~~~~~~~i~v~~~~~~i~v~~~~~-------~----------~~l~~~L~~~I~~~   77 (121)
T 2cr0_A           16 DLPNYRWTQTL-AELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQ-------P----------PVVDGELYNEVKVE   77 (121)
T ss_dssp             ECSSCEEEECS-SEEEEEEECCCSSCCCTTTBCCEECSSEEEECBSSS-------C----------CSEEEEBSSCBCTT
T ss_pred             CCCCEEEEEEC-CEEEEEEECCCCCCCCHHHEEEEECCCEEEEEECCC-------C----------EEEECCCCCCCCCC
T ss_conf             67998889689-989999981789997446879994168899998687-------4----------17814234726655


Q ss_pred             E--EEEEC-CEEEEEEECCCCHH
Q ss_conf             0--38528-85999974068601
Q gi|254780621|r  110 S--ASLEN-GLLYLELLRSVPER  129 (157)
Q Consensus       110 ~--A~~~n-GiLtI~lpK~~pe~  129 (157)
                      .  ..+++ +.|.|+|.|..+..
T Consensus        78 ~s~~~i~~~k~i~i~L~K~~~~~  100 (121)
T 2cr0_A           78 ESSWLIEDGKVVTVHLEKINKME  100 (121)
T ss_dssp             TCEEEEETTTEEEEEEEBSCTTC
T ss_pred             CCEEEEECCCEEEEEEEECCCCC
T ss_conf             56899958999999999266988


No 17 
>>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=92.80  E-value=0.49  Score=26.29  Aligned_cols=77  Identities=10%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCC--HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE--
Q ss_conf             8884368994899399999701177--021499996217999973033235566213455302304688973866158--
Q gi|254780621|r   33 AYPPYDIERTGENAYRITIAVSGFH--PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV--  108 (157)
Q Consensus        33 ~~P~~dI~~~~e~~y~i~~~lPG~~--kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~--  108 (157)
                      .+|.+.|.++ ++...|.+-+|-+.  .-++++.+++...+.-.                   .-|-.+..||..+.-  
T Consensus         2 iTP~F~itQd-~~fv~I~I~~p~~r~s~~~~e~~i~~~~F~F~~-------------------~PYyLRL~fp~~i~ed~   61 (134)
T 2k8q_A            2 ITPRFSITQD-EEFIFLKIFISNIRFSAVGLEIIIQENMIIFHL-------------------SPYYLRLRFPHELIDDE   61 (134)
T ss_dssp             CCSEEEEEEC-SSEEEEEEECCSSCCCSSSCCCEECSSSEEECS-------------------SSSCEEECCSSCEECCS
T ss_pred             CCCEEEEEEC-CCEEEEEEEECCCCCCCCCEEEEECCCEEEEEC-------------------CCCEEEEECCCCEECCC
T ss_conf             7861898758-998999999252012677527997488999962-------------------66068980797252388


Q ss_pred             -EEEEE--ECCEEEEEEECCCCHH
Q ss_conf             -10385--2885999974068601
Q gi|254780621|r  109 -MSASL--ENGLLYLELLRSVPER  129 (157)
Q Consensus       109 -~~A~~--~nGiLtI~lpK~~pe~  129 (157)
                       .+|+|  +.|.++|+|||..|-+
T Consensus        62 ~~~a~yd~~~~~~tv~lpKe~~Ge   85 (134)
T 2k8q_A           62 RSTAQYDSKDECINVKVAKLNKNE   85 (134)
T ss_dssp             SCEEEEETTTTEEEEEEEESSTTC
T ss_pred             CCEEEEECCCCEEEEEEECCCCCC
T ss_conf             733889766878999983776787


No 18 
>>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=90.88  E-value=0.72  Score=25.25  Aligned_cols=79  Identities=9%  Similarity=0.045  Sum_probs=54.2

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEE
Q ss_conf             88436899489939999970117702149999621799997303323556621345530230468897386615810385
Q gi|254780621|r   34 YPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASL  113 (157)
Q Consensus        34 ~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~  113 (157)
                      .|.|+=+++++ ...|.+.++|+...+|+|  +.+.+.+++.-...   +          ..|.-.+.|-..|.+....+
T Consensus         4 ~p~~~W~Qt~~-~V~i~i~~~~v~~~~v~v--~~~~~~~~~~~~~~---~----------~~y~~~l~L~~~I~p~~s~~   67 (150)
T 2kmw_A            4 NPEVLWAQRSD-KVYLTVALPDAKDISVKC--EPQGLFSFSALGAQ---G----------ERFEFSLELYGKIMTEYRKN   67 (150)
T ss_dssp             CCCEEEEECSS-EEEEEECCSSEEEEEECC--CTTEEEEEEEETTT---T----------EEEEEEEEBSSCEEEEEEEE
T ss_pred             CCCEEEEECCC-EEEEEEEECCCCCCEEEE--EECEEEEEEECCCC---C----------CEEEEEEEEECCCCCCCCEE
T ss_conf             99888876799-899999958998764899--61616998501789---9----------76899999701115454368


Q ss_pred             ECC-EEEEEEECCCCH
Q ss_conf             288-599997406860
Q gi|254780621|r  114 ENG-LLYLELLRSVPE  128 (157)
Q Consensus       114 ~nG-iLtI~lpK~~pe  128 (157)
                      .-| -+.|+|.|..+.
T Consensus        68 ~~~~~iei~L~K~e~~   83 (150)
T 2kmw_A           68 VGLRNIIFSIQKEERS   83 (150)
T ss_dssp             EESSSEEEEEEECCSS
T ss_pred             ECCCEEEEEEECCCCC
T ss_conf             3487699999827888


No 19 
>>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:1-21,A:66-94)
Probab=60.38  E-value=12  Score=17.71  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=24.1

Q ss_pred             CCCCEEEEEECCCCCHHHEEEEEE-CCEEEEEEEECC
Q ss_conf             899399999701177021499996-217999973033
Q gi|254780621|r   43 GENAYRITIAVSGFHPSEITIEVD-SSILMVRGEKKS   78 (157)
Q Consensus        43 ~e~~y~i~~~lPG~~kedi~V~v~-~~~LtI~g~~~~   78 (157)
                      .++.|-+.+++-.|++--|.-++. +++|||.|-++.
T Consensus         8 ekd~fsvnldvkhfDPl~ITsSLSsDGVLTv~gPrkq   44 (50)
T 2wj7_A            8 EKDRFSVNLDVKHFDPLTITSSLSSDGVLTVNGPRKQ   44 (50)
T ss_dssp             CSSEEEEEEECTTSCGGGCEEEECTTSEEEEEEECC-
T ss_pred             CCCEEEEEEECCCCCHHHEEEEECCCCEEEEEEECCC
T ss_conf             7986999999999996686999888988999988687


No 20 
>>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} (A:)
Probab=55.05  E-value=11  Score=17.84  Aligned_cols=12  Identities=17%  Similarity=0.556  Sum_probs=4.5

Q ss_pred             EEEECCEEEEEE
Q ss_conf             385288599997
Q gi|254780621|r  111 ASLENGLLYLEL  122 (157)
Q Consensus       111 A~~~nGiLtI~l  122 (157)
                      +.+.+|||+|++
T Consensus        32 ~e~~~gVLti~f   43 (106)
T 1ew4_A           32 CEINGGVLTITF   43 (106)
T ss_dssp             EEEETTEEEEEC
T ss_pred             EECCCCEEEEEE
T ss_conf             460599899997


No 21 
>>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} (A:1-80)
Probab=50.93  E-value=17  Score=16.75  Aligned_cols=43  Identities=19%  Similarity=0.334  Sum_probs=31.3

Q ss_pred             HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf             02149999621799997303323556621345530230468897386615810385288599997
Q gi|254780621|r   58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLEL  122 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~l  122 (157)
                      |++++|+++++.|+|+|-+-                   +.+..|+..+.   ...++|-|.|..
T Consensus        11 P~~V~v~i~~~~i~vkGp~G-------------------~l~~~~~~~v~---~~~~~~~i~i~~   53 (80)
T 1rl6_A           11 PAGVTVTVNGNTVTVKGPKG-------------------ELTRTFHPDMT---ITVEGNVITVTR   53 (80)
T ss_dssp             CTTCEEEEETTEEEEEETTE-------------------EEEEECCTTCE---EEEETTEEEEEC
T ss_pred             CCCCEEEEECCEEEEEECCE-------------------EEEEEECCCCC---CCCCCCEEEEEE
T ss_conf             99988999799999994986-------------------89886447420---011685899984


No 22 
>>1s3r_A Intermedilysin; toxin; 2.60A {Streptococcus intermedius} (A:1-77,A:120-179,A:260-304,A:384-400)
Probab=47.13  E-value=20  Score=16.39  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=28.3

Q ss_pred             CCEEEEEECCCCCHHHEEEEEECCEEEEEEEEC
Q ss_conf             939999970117702149999621799997303
Q gi|254780621|r   45 NAYRITIAVSGFHPSEITIEVDSSILMVRGEKK   77 (157)
Q Consensus        45 ~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~   77 (157)
                      ....|.++|||+...+=.|.+.+-.-+|+-.-.
T Consensus       114 ~p~TiSvDLPGm~~~~~~i~v~npfYtvsvD~P  146 (199)
T 1s3r_A          114 GKTTISVNLPGLKNGESNLTVENPYYTASVDSP  146 (199)
T ss_dssp             CCEEEEECCTTCCTTTTEEEESSCEEEEEECCC
T ss_pred             CCEEEEEECCCCCCCCCCEEECCCEEEEEECCC
T ss_conf             865999978887578885686489889985588


No 23 
>>2fql_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transport protein; 3.01A {Saccharomyces cerevisiae} (A:)
Probab=45.91  E-value=20  Score=16.27  Aligned_cols=12  Identities=33%  Similarity=0.706  Sum_probs=4.7

Q ss_pred             EEEECCEEEEEE
Q ss_conf             385288599997
Q gi|254780621|r  111 ASLENGLLYLEL  122 (157)
Q Consensus       111 A~~~nGiLtI~l  122 (157)
                      +.+.+|||+|++
T Consensus        51 ~e~~~gVLti~~   62 (123)
T 2fql_A           51 VELSHGVMTLEI   62 (123)
T ss_dssp             EECCSSEEEEEE
T ss_pred             EECCCCEEEEEE
T ss_conf             562499799997


No 24 
>>3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_H (H:1-79)
Probab=45.75  E-value=21  Score=16.26  Aligned_cols=46  Identities=20%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEEE
Q ss_conf             021499996217999973033235566213455302304688973866158103852885999974
Q gi|254780621|r   58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLELL  123 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~lp  123 (157)
                      |+.++|+++++.++|+|.+                 |+-.|.|..+..+   ....+++.|.|...
T Consensus         8 P~~V~v~i~~~~i~vkGp~-----------------G~ls~~~~~~~~~---~~~~~~~~i~v~~~   53 (79)
T 3jyw_H            8 PEGVTVSIKSRIVKVVGPR-----------------GTLTKNLKHIDVT---FTKVNNQLIKVAVH   53 (79)
T ss_dssp             CTTCEEEEETTEEEEECSS-----------------CEEEEECCCSSCB---CCCEETTEEEEECS
T ss_pred             CCCCEEEEECCEEEEECCC-----------------EEEEEEECCCCEE---EEECCCCEEEEEEC
T ss_conf             9998999979999998689-----------------8999994588578---99938987999707


No 25 
>>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=42.30  E-value=19  Score=16.45  Aligned_cols=18  Identities=22%  Similarity=0.632  Sum_probs=14.6

Q ss_pred             HHHEEEEEECCEEEEEEE
Q ss_conf             021499996217999973
Q gi|254780621|r   58 PSEITIEVDSSILMVRGE   75 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~   75 (157)
                      |++++|+++++.++|+|.
T Consensus        20 P~gV~V~i~~~~itVkGp   37 (100)
T 2cql_A           20 PENVDITLKGRTVIVKGP   37 (100)
T ss_dssp             CSSCEEEEETTEEEEEET
T ss_pred             CCCCEEEEECCEEEEEEC
T ss_conf             999799996999999928


No 26 
>>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (E:1-79)
Probab=41.36  E-value=22  Score=16.11  Aligned_cols=44  Identities=18%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCC-CCEEEEEEEECCEEEEEEE
Q ss_conf             02149999621799997303323556621345530230468897386-6158103852885999974
Q gi|254780621|r   58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLAD-FVEVMSASLENGLLYLELL  123 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~-~ve~~~A~~~nGiLtI~lp  123 (157)
                      |++++|+++++.++|+|.+                 |+-  +..||. .+   ....++|.|++...
T Consensus         9 P~~V~v~i~~~~i~vkGp~-----------------G~l--~~~~~~~~v---~i~~~~~~i~v~~~   53 (79)
T 1vq8_E            9 PEDVDAEQDHLDITVEGDN-----------------GSV--TRRLWYPDI---DVSVDGDTVVIESD   53 (79)
T ss_dssp             CTTCEEEEETTEEEEEETT-----------------EEE--EEECCCTTC---EEEEETTEEEEECS
T ss_pred             CCCCEEEEECCEEEEECCC-----------------EEE--EEEECCCCE---EEEECCCEEEEECC
T ss_conf             9997899979999998489-----------------899--999148857---99983988998427


No 27 
>>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:1-86)
Probab=39.83  E-value=24  Score=15.87  Aligned_cols=18  Identities=22%  Similarity=0.632  Sum_probs=14.8

Q ss_pred             HHHEEEEEECCEEEEEEE
Q ss_conf             021499996217999973
Q gi|254780621|r   58 PSEITIEVDSSILMVRGE   75 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~   75 (157)
                      |++++|++.++.++|+|.
T Consensus        13 P~~V~v~i~~~~i~VkGp   30 (86)
T 2zkr_e           13 PENVDITLKGRTVIVKGP   30 (86)
T ss_dssp             CTTCEEEEETTEEEEEET
T ss_pred             CCCCEEEEECCEEEEECC
T ss_conf             999899998999999949


No 28 
>>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} (A:1-108)
Probab=38.56  E-value=27  Score=15.57  Aligned_cols=32  Identities=16%  Similarity=0.372  Sum_probs=25.2

Q ss_pred             CCEEEEEECCCCEEEEEECCCCC-HHHEEEEEE
Q ss_conf             84368994899399999701177-021499996
Q gi|254780621|r   35 PPYDIERTGENAYRITIAVSGFH-PSEITIEVD   66 (157)
Q Consensus        35 P~~dI~~~~e~~y~i~~~lPG~~-kedi~V~v~   66 (157)
                      -|+-|.++|++--.+++++|-++ .+||++.+.
T Consensus        50 ~pfkvle~dknialvem~ipvyk~ek~ielkls   82 (108)
T 3bws_A           50 LPFKVLEMDKNIALVEXAIPVYKDEKEIELKLS   82 (108)
T ss_dssp             CCEEEEEEETTEEEEEEEEECCCTTCCEEEEEE
T ss_pred             CCEEEEECCCCCCCCCCCCCEECCCCCEEEEEE
T ss_conf             330034300476420025201048551389970


No 29 
>>2ks0_A Uncharacterized protein; YABP family, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense} PDB: 3ipf_A (A:)
Probab=37.66  E-value=24  Score=15.78  Aligned_cols=26  Identities=38%  Similarity=0.658  Sum_probs=21.4

Q ss_pred             EECCCCCHHHEEEEEECCEEEEEEEE
Q ss_conf             97011770214999962179999730
Q gi|254780621|r   51 IAVSGFHPSEITIEVDSSILMVRGEK   76 (157)
Q Consensus        51 ~~lPG~~kedi~V~v~~~~LtI~g~~   76 (157)
                      .+|--|+.+.|-++.+-+.|+|+|+.
T Consensus        13 ~~V~SFD~~~i~LeT~~G~L~IkG~~   38 (71)
T 2ks0_A           13 SKVQSFDPKEILLETIQGVLSIKGEK   38 (71)
T ss_dssp             EEEEEECSSEEEEEETTEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEECCEEEEEECCC
T ss_conf             88888988579999565089997256


No 30 
>>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (E:1-109)
Probab=36.72  E-value=23  Score=15.92  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEEE
Q ss_conf             021499996217999973033235566213455302304688973866158103852885999974
Q gi|254780621|r   58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLELL  123 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~lp  123 (157)
                      |+.++|+++++.++|+|.+-                   +.+..|+..+.   ...++|.+.|...
T Consensus        39 P~~V~v~i~~~~i~VkGp~G-------------------~L~~~l~~~v~---i~~~~~~i~v~~~   82 (109)
T 1nkw_E           39 PSGVTVNAQDGVFKVKGPKG-------------------ELTVPYNTELT---VRQDGDQLLVERP   82 (109)
T ss_pred             CCCCEEEEECCEEEEECCCE-------------------EEEEECCCCEE---EEECCCEEEEECC
T ss_conf             99978999799999982884-------------------49998488727---8726878999516


No 31 
>>2j01_H 50S ribosomal protein L6; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (H:1-81)
Probab=34.13  E-value=21  Score=16.15  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=14.0

Q ss_pred             HHHEEEEEECCEEEEEEEE
Q ss_conf             0214999962179999730
Q gi|254780621|r   58 PSEITIEVDSSILMVRGEK   76 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~~   76 (157)
                      |+.++|+++++.++|+|-+
T Consensus        12 P~~V~v~i~~~~i~vkGp~   30 (81)
T 2j01_H           12 PKGVSVEVAPGRVKVKGPK   30 (81)
T ss_dssp             CTTCEEEECSSCEEEECSS
T ss_pred             CCCCEEEEECCEEEEECCC
T ss_conf             9998899979999998399


No 32 
>>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:183-251)
Probab=32.72  E-value=25  Score=15.68  Aligned_cols=20  Identities=50%  Similarity=0.642  Sum_probs=13.2

Q ss_pred             CCCCCEEEEEEEECCEEEEE
Q ss_conf             38661581038528859999
Q gi|254780621|r  102 LADFVEVMSASLENGLLYLE  121 (157)
Q Consensus       102 Lp~~ve~~~A~~~nGiLtI~  121 (157)
                      |.|-++..-|+|+|||||..
T Consensus        40 l~dl~e~~~aty~ngiltf~   59 (69)
T 1xmx_A           40 LSDLVEAKIASYENGILTFI   59 (69)
T ss_dssp             HHHHHHTTSEEEETTEEEES
T ss_pred             HHHHHHCCCEEECCCEEEEC
T ss_conf             99998645425318777725


No 33 
>>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (I:1-123)
Probab=32.20  E-value=15  Score=17.04  Aligned_cols=45  Identities=29%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEEE
Q ss_conf             021499996217999973033235566213455302304688973866158103852885999974
Q gi|254780621|r   58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLELL  123 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~lp  123 (157)
                      |++++|+++++.++|+|.+-                   +.+..+|..+..  ...+++.|.|...
T Consensus        54 P~~V~V~i~~~~itVkGp~G-------------------~Ls~~~~~~v~~--~~~e~~~i~v~~~   98 (123)
T 3bbo_I           54 PSNVTIALEGQDLKVKGPLG-------------------ELALTYPREVEL--TKEESGFLRVKKT   98 (123)
T ss_dssp             STTSCEEESSSEEEECCSSC-------------------CEEEECCSSCEE--EECSSSCEEEECS
T ss_pred             CCCCEEEEECCEEEEECCCE-------------------EEEEEECCCCEE--EEECCCEEEEECC
T ss_conf             99988999799999986798-------------------999995787317--8732634887133


No 34 
>>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural genomics, PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} (A:1-33,A:320-406)
Probab=31.76  E-value=2.2  Score=22.22  Aligned_cols=75  Identities=16%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEE
Q ss_conf             910341102356786788976454106677788884368994899399999701177021499996217999973
Q gi|254780621|r    1 MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGE   75 (157)
Q Consensus         1 m~~~~~~~~~~~~gfD~~f~~~~~~~~~~~~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~   75 (157)
                      |+|....+..-|--..+.++...-..-....+..|-+-|+-..+..=.+.+.++|++.+++--.++..-+.+++-
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IpgV~i~g~~~r~~ivsf~v~gi~~~~i~~~L~~~gI~vsaG   75 (120)
T 1kmj_A            1 MIFSVDKVRADFPVLSREVNGLPLAYLDSAASAVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTG   75 (120)
T ss_dssp             -CCCHHHHHHTCGGGGCEETTEECEECCTTTCCSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEE
T ss_pred             CCCCHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECC
T ss_conf             998889998758200567089984997382006896352588666757999738989999999997789599756


No 35 
>>3i1n_G 50S ribosomal protein L6; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_G 3e1b_3 3e1d_3 1vs6_G 3i1p_G 3i1r_G 3i1t_G 3i20_G 3i22_G 2qam_G* 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* ... (G:1-81)
Probab=20.74  E-value=24  Score=15.78  Aligned_cols=43  Identities=16%  Similarity=0.374  Sum_probs=26.2

Q ss_pred             HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf             02149999621799997303323556621345530230468897386615810385288599997
Q gi|254780621|r   58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLEL  122 (157)
Q Consensus        58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~l  122 (157)
                      |+.++|+++++.++|+|.+-.                   .++.|+..+.   ...+++-+.+..
T Consensus        12 P~gV~v~i~~~~i~vkGp~G~-------------------l~~~~~~~i~---~~~~~~~i~v~~   54 (81)
T 3i1n_G           12 PAGVDVKINGQVITIKGKNGE-------------------LTRTLNDAVE---VKHADNTLTFGP   54 (81)
T ss_dssp             CTTCCCEEETTEEECCCSSSC-------------------CCEEECSSCE---EECCTTSCEEEC
T ss_pred             CCCCEEEEECCEEEEECCCEE-------------------EEEEEECCEE---EEECCCEEEEEE
T ss_conf             999899997999999919988-------------------9999834368---996586899982


No 36 
>>1pfo_A Perfringolysin O, PFO; toxin, thiol-activated cytolysin, hemolysis, cytolysis; 2.20A {Clostridium perfringens} (A:1-49,A:91-171,A:230-275,A:356-370)
Probab=20.28  E-value=46  Score=14.09  Aligned_cols=16  Identities=19%  Similarity=0.414  Sum_probs=13.1

Q ss_pred             CCEEEEEECCCCCHHH
Q ss_conf             9399999701177021
Q gi|254780621|r   45 NAYRITIAVSGFHPSE   60 (157)
Q Consensus        45 ~~y~i~~~lPG~~ked   60 (157)
                      .-..|.++|||+.+++
T Consensus        86 ~PltiSIDLPGm~~en  101 (191)
T 1pfo_A           86 KPININIDLPGLKGEN  101 (191)
T ss_dssp             CCEEEEECCTTCTTSC
T ss_pred             CCEEEEEECCCCCCCC
T ss_conf             8769999778888888


Done!