Query gi|254780621|ref|YP_003065034.1| small heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 157
No_of_seqs 114 out of 2566
Neff 6.6
Searched_HMMs 13730
Date Wed Jun 1 08:36:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780621.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gmea_ b.15.1.1 (A:) Small he 99.9 7.5E-26 5.5E-30 177.4 13.3 105 33-138 41-149 (150)
2 d1shsa_ b.15.1.1 (A:) Small he 99.9 1.4E-22 1E-26 157.1 12.7 106 30-138 6-115 (115)
3 d1rl1a_ b.15.1.3 (A:) Suppress 96.4 0.01 7.5E-07 34.2 8.5 78 35-127 3-82 (92)
4 d1wh0a_ b.15.1.3 (A:) Ubiquiti 96.0 0.043 3.1E-06 30.4 9.9 90 36-128 21-113 (134)
5 d1ejfa_ b.15.1.2 (A:) Co-chape 82.3 1.4 0.00011 21.0 10.8 76 37-128 6-83 (110)
6 d1wfia_ b.15.1.4 (A:) Nuclear 80.4 1.7 0.00012 20.5 9.4 78 32-127 5-88 (131)
7 d1rl6a1 d.141.1.1 (A:7-81) Rib 53.0 6.4 0.00047 17.0 6.3 43 58-122 5-47 (75)
8 d1ew4a_ d.82.2.1 (A:) CyaY {Es 48.5 6.8 0.00049 16.8 3.0 13 61-73 30-42 (106)
9 d2cqla1 d.141.1.1 (A:1-87) Rib 40.6 8.6 0.00062 16.2 2.5 47 58-122 13-59 (87)
10 d1vqoe1 d.141.1.1 (E:1-79) Rib 39.8 8.9 0.00065 16.1 2.5 44 58-122 8-51 (79)
11 d2j01h1 d.141.1.1 (H:12-82) Ri 37.3 6.9 0.0005 16.8 1.6 19 58-76 1-19 (71)
12 d1wgva_ b.15.1.4 (A:) NudC dom 35.8 12 0.00087 15.3 10.9 78 34-126 19-101 (124)
13 d2zjre2 d.141.1.1 (E:5-82) Rib 20.8 7.1 0.00052 16.7 -0.7 19 58-76 8-26 (78)
No 1
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=99.93 E-value=7.5e-26 Score=177.37 Aligned_cols=105 Identities=27% Similarity=0.429 Sum_probs=89.5
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECCCC-CCCCCEEEEEEECCEEEEEEECCCCCEE--
Q ss_conf 88843689948993999997011770214999962-1799997303323-5566213455302304688973866158--
Q gi|254780621|r 33 AYPPYDIERTGENAYRITIAVSGFHPSEITIEVDS-SILMVRGEKKSEE-KETVEYLHRGIAKRAFERRFQLADFVEV-- 108 (157)
Q Consensus 33 ~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~-~~LtI~g~~~~~~-~~~~~~~~~e~~~~~F~R~f~Lp~~ve~-- 108 (157)
+.|++||.++ +++|+|+++|||++++||+|++++ +.|+|+|+++.+. .++..|+++|+.+|+|+|+|.||++++.
T Consensus 41 ~~p~~dv~e~-~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 119 (150)
T d1gmea_ 41 ANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEE 119 (150)
T ss_dssp GGGCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGG
T ss_pred CCCCEEEEEC-CCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEECE
T ss_conf 7873258987-997999999099964777999997653037888701454441225550023630889988788754031
Q ss_pred EEEEEECCEEEEEEECCCCHHHCCEEEEEC
Q ss_conf 103852885999974068601187288733
Q gi|254780621|r 109 MSASLENGLLYLELLRSVPERMKPRRIEIS 138 (157)
Q Consensus 109 ~~A~~~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157)
++|+|+||||+|++||..++..+.++|+|+
T Consensus 120 i~A~~~nGvL~I~lpK~~~~~~~~~~I~I~ 149 (150)
T d1gmea_ 120 VKAGLENGVLTVTVPKAEVKKPEVKAIQIS 149 (150)
T ss_dssp CEEEEETTEEEEEEECCCCCTTCCCCCCCC
T ss_pred EEEEEECCEEEEEEECCCCCCCCCEEEECC
T ss_conf 689987999999987377678886388546
No 2
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.88 E-value=1.4e-22 Score=157.09 Aligned_cols=106 Identities=19% Similarity=0.263 Sum_probs=88.1
Q ss_pred CCCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCC-CCCC-CEEEEEEECCEEEEEEECCCCCE
Q ss_conf 778888436899489939999970117702149999621799997303323-5566-21345530230468897386615
Q gi|254780621|r 30 QTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEE-KETV-EYLHRGIAKRAFERRFQLADFVE 107 (157)
Q Consensus 30 ~~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~-~~~~-~~~~~e~~~~~F~R~f~Lp~~ve 107 (157)
...+|||+||+++ +++|.|.++|||++++||+|+++++.|+|+|++.... .+.. .++++++.+|.|.|+|.||.+++
T Consensus 6 ~~~~~~pvdi~e~-~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd 84 (115)
T d1shsa_ 6 SGKGFMPISIIEG-DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVK 84 (115)
T ss_dssp EEESCCCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBC
T ss_pred CCCCCCCEEEEEC-CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCEE
T ss_conf 7887573689991-998999999899977998999987789999870543310115179886421562589980677442
Q ss_pred E--EEEEEECCEEEEEEECCCCHHHCCEEEEEC
Q ss_conf 8--103852885999974068601187288733
Q gi|254780621|r 108 V--MSASLENGLLYLELLRSVPERMKPRRIEIS 138 (157)
Q Consensus 108 ~--~~A~~~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157)
. .+|+|+||||+|++||. +..++|+|+|.
T Consensus 85 ~~~i~A~~~nGvL~I~lpK~--~~~~~~~I~Ie 115 (115)
T d1shsa_ 85 EENASAKFENGVLSVILPKA--ESSIKKGINIE 115 (115)
T ss_dssp GGGCEEEEETTEEEEEEEBC--GGGCCEECCCC
T ss_pred ECCEEEEEECCEEEEEEEEC--CCCCCCEEEEC
T ss_conf 03038999799999999947--87898065549
No 3
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.44 E-value=0.01 Score=34.24 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEE--EE
Q ss_conf 8436899489939999970117702149999621799997303323556621345530230468897386615810--38
Q gi|254780621|r 35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMS--AS 112 (157)
Q Consensus 35 P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~--A~ 112 (157)
+.|+=+++++ ...|.+.+||+.++++.|.+..+.|.+...-. .+. .|...+.|...|++.. .+
T Consensus 3 ~ry~W~Qt~~-~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~----~~~----------~y~~~~~L~~~I~p~~s~~~ 67 (92)
T d1rl1a_ 3 IKYDWYQTES-QVVITLMIKNVQKNDVNVEFSEKELSALVKLP----SGE----------DYNLKLELLHPIIPEQSTFK 67 (92)
T ss_dssp CCEEEEECSS-EEEEEECCCSCCGGGEEEECSSSCEEEEEECT----TSS----------EEEEEECBSSCCCGGGEEEE
T ss_pred CCEEEEECCC-EEEEEEEECCCCHHHEEEEEECCEEEEEEECC----CCC----------EEEEEEECCCCCCCHHCEEE
T ss_conf 7656895799-99999994899867669999618899999758----994----------79998772766073134999
Q ss_pred EECCEEEEEEECCCC
Q ss_conf 528859999740686
Q gi|254780621|r 113 LENGLLYLELLRSVP 127 (157)
Q Consensus 113 ~~nGiLtI~lpK~~p 127 (157)
+.++-+.|+|.|..+
T Consensus 68 ~~~~kiei~L~K~~~ 82 (92)
T d1rl1a_ 68 VLSTKIEIKLKKPEA 82 (92)
T ss_dssp ECSSSEEEEEECSSC
T ss_pred EECCEEEEEEEECCC
T ss_conf 939999999997999
No 4
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.02 E-value=0.043 Score=30.40 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=62.8
Q ss_pred CEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEE-EECCEEEEEEECCCCCEEEEE--E
Q ss_conf 4368994899399999701177021499996217999973033235566213455-302304688973866158103--8
Q gi|254780621|r 36 PYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG-IAKRAFERRFQLADFVEVMSA--S 112 (157)
Q Consensus 36 ~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e-~~~~~F~R~f~Lp~~ve~~~A--~ 112 (157)
..|=|+++++...|.+-+.|+.++++.|++.++.|+|+-.-..... .. +|-. -..+.|.-.+.|-..|++... .
T Consensus 21 r~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~--~~-~~~~~~~~~~~~~~~~L~~~I~pe~S~~~ 97 (134)
T d1wh0a_ 21 KNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNF--LR-LHPGCGPHTTFRWQVKLRNLIEPEQCTFC 97 (134)
T ss_dssp CEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHH--HH-HSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred CCCEEECCCCEEEEEEEECCCCHHHEEEEEECCEEEEEEECCCCCC--EE-ECCCCCCCEEEEEEEECCCCCCHHHCEEE
T ss_conf 4440652898899999968876035389986899999987788863--01-03366767037885002351373385798
Q ss_pred EECCEEEEEEECCCCH
Q ss_conf 5288599997406860
Q gi|254780621|r 113 LENGLLYLELLRSVPE 128 (157)
Q Consensus 113 ~~nGiLtI~lpK~~pe 128 (157)
...+-+.|+|.|..+.
T Consensus 98 v~~~kiei~L~K~~~~ 113 (134)
T d1wh0a_ 98 FTASRIDICLRKRQSQ 113 (134)
T ss_dssp ECSSEEEEEEEESSSC
T ss_pred ECCCEEEEEEEECCCC
T ss_conf 6799899999968999
No 5
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.33 E-value=1.4 Score=20.96 Aligned_cols=76 Identities=9% Similarity=0.046 Sum_probs=52.8
Q ss_pred EEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEE--EEEE
Q ss_conf 36899489939999970117702149999621799997303323556621345530230468897386615810--3852
Q gi|254780621|r 37 YDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMS--ASLE 114 (157)
Q Consensus 37 ~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~--A~~~ 114 (157)
+-=+++.+ ...|.+.+||. .+++|.++.+.|.+++.-... +. .|.-.+.|...|.+.. -++.
T Consensus 6 ~~W~Qt~~-~V~i~I~v~~~--~~~~v~i~~~~l~~~~~~~~~---~~----------~y~l~~~L~~~I~~~~s~~~v~ 69 (110)
T d1ejfa_ 6 AKWYDRRD-YVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSD---NF----------KHLNEIDLFHCIDPNDSKHKRT 69 (110)
T ss_dssp EEEEECSS-EEEEEECCTTE--EEEEEEEETTEEEEEEEETTT---TE----------EEEEEEEBSSCEEEEEEEEEEC
T ss_pred CEEEECCC-EEEEEEEECCC--CCCEEEEEECEEEEEEEECCC---CC----------EEEEEEECCCCCCCCCCEEEEE
T ss_conf 37877899-89999990788--772699781559999984578---82----------5999878012763675579992
Q ss_pred CCEEEEEEECCCCH
Q ss_conf 88599997406860
Q gi|254780621|r 115 NGLLYLELLRSVPE 128 (157)
Q Consensus 115 nGiLtI~lpK~~pe 128 (157)
++-+.|+|.|..+.
T Consensus 70 ~~kiei~L~K~~~~ 83 (110)
T d1ejfa_ 70 DRSILCCLRKGESG 83 (110)
T ss_dssp SSCEEEEEEESSTT
T ss_pred CCEEEEEEEECCCC
T ss_conf 99799999975778
No 6
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}
Probab=80.38 E-value=1.7 Score=20.54 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCCCCEEEEEECCCCEEEEEECC---CCCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE
Q ss_conf 88884368994899399999701---177021499996217999973033235566213455302304688973866158
Q gi|254780621|r 32 SAYPPYDIERTGENAYRITIAVS---GFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV 108 (157)
Q Consensus 32 ~~~P~~dI~~~~e~~y~i~~~lP---G~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~ 108 (157)
...|.|.=.++.+ ...|.+.+| |++++||.|++..+.|.|.-... ..+ ..| .|...|++
T Consensus 5 ~~~~~Y~W~Qt~~-eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~------~~l-----l~g------~L~~~I~~ 66 (131)
T d1wfia_ 5 SSGPNYRWTQTLA-ELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQ------PPV-----VDG------ELYNEVKV 66 (131)
T ss_dssp SSCCSSEEEECSS-EEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTS------CCS-----BCS------CBSSCBCS
T ss_pred CCCCCEEEEEECC-EEEEEEECCCCCCCCHHHEEEEEECCEEEEEECCC------CEE-----ECC------CCCCCCCC
T ss_conf 7789957884689-89999974799984200289996079899997488------404-----326------12475255
Q ss_pred EE--EEEECC-EEEEEEECCCC
Q ss_conf 10--385288-59999740686
Q gi|254780621|r 109 MS--ASLENG-LLYLELLRSVP 127 (157)
Q Consensus 109 ~~--A~~~nG-iLtI~lpK~~p 127 (157)
.. =++++| +|.|+|.|..+
T Consensus 67 des~W~ied~~~l~i~L~K~~~ 88 (131)
T d1wfia_ 67 EESSWLIEDGKVVTVHLEKINK 88 (131)
T ss_dssp TTCEEEEETTTEEEEEEEBSSS
T ss_pred CCCEEEEECCCEEEEEEEECCC
T ss_conf 5248999489989999997878
No 7
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=53.02 E-value=6.4 Score=16.96 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=31.1
Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf 02149999621799997303323556621345530230468897386615810385288599997
Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLEL 122 (157)
Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~l 122 (157)
|++++|+++++.++|+|.+ |+. ++.++..+. ...+++.|.|..
T Consensus 5 P~gV~v~i~~~~i~vkGpk-----------------G~L--~~~~~~~v~---i~~~~~~i~v~~ 47 (75)
T d1rl6a1 5 PAGVTVTVNGNTVTVKGPK-----------------GEL--TRTFHPDMT---ITVEGNVITVTR 47 (75)
T ss_dssp CTTCEEEEETTEEEEEETT-----------------EEE--EEECCTTCE---EEEETTEEEEEC
T ss_pred CCCCEEEEECCEEEEEECC-----------------EEE--EEECCCCEE---EEEECCEEEECC
T ss_conf 9996999979999999098-----------------779--996267689---999074578706
No 8
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=48.48 E-value=6.8 Score=16.81 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=5.1
Q ss_pred EEEEEECCEEEEE
Q ss_conf 4999962179999
Q gi|254780621|r 61 ITIEVDSSILMVR 73 (157)
Q Consensus 61 i~V~v~~~~LtI~ 73 (157)
++++..+|+|+|+
T Consensus 30 ~D~e~~~gvLti~ 42 (106)
T d1ew4a_ 30 IDCEINGGVLTIT 42 (106)
T ss_dssp CEEEEETTEEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 4456259989999
No 9
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.56 E-value=8.6 Score=16.18 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=26.0
Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf 02149999621799997303323556621345530230468897386615810385288599997
Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLEL 122 (157)
Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~l 122 (157)
|++++|+++++.++|+|.+ |+.+|.|.-| .++......+++.+.+.-
T Consensus 13 P~gV~v~i~~~~i~vkGpk-----------------G~L~~~~~~~-~v~~~~~~~~~~~i~v~~ 59 (87)
T d2cqla1 13 PENVDITLKGRTVIVKGPR-----------------GTLRRDFNHI-NVELSLLGKKKKRLRVDK 59 (87)
T ss_dssp CSSCEEEEETTEEEEEETT-----------------EEEEEECCSS-CCEEEEECSSSCEEEEEC
T ss_pred CCCCEEEEECCEEEEECCC-----------------CEEEEEECCC-CCEEEEEECCCCEEEEEC
T ss_conf 9997999969999999199-----------------3799992478-610799612334799603
No 10
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=39.81 E-value=8.9 Score=16.07 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=28.0
Q ss_pred HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf 02149999621799997303323556621345530230468897386615810385288599997
Q gi|254780621|r 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYLEL 122 (157)
Q Consensus 58 kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~A~~~nGiLtI~l 122 (157)
|++++|+++++.++|+|.+ |..+|.|.- ..+. .+.+++.|.|..
T Consensus 8 P~~V~v~i~~~~i~vkGp~-----------------G~L~~~~~~-~~v~---i~~~~~~i~v~~ 51 (79)
T d1vqoe1 8 PEDVDAEQDHLDITVEGDN-----------------GSVTRRLWY-PDID---VSVDGDTVVIES 51 (79)
T ss_dssp CSSCEEEEETTEEEEEETT-----------------EEEEEECCC-TTCE---EEECSSEEEEEC
T ss_pred CCCCEEEEECCEEEEECCC-----------------EEEEEECCC-CEEE---EEECCCEEEECC
T ss_conf 9995999969999999498-----------------089999568-8089---998099899646
No 11
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=37.25 E-value=6.9 Score=16.78 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.2
Q ss_pred HHHEEEEEECCEEEEEEEE
Q ss_conf 0214999962179999730
Q gi|254780621|r 58 PSEITIEVDSSILMVRGEK 76 (157)
Q Consensus 58 kedi~V~v~~~~LtI~g~~ 76 (157)
|+.++|+++++.++|+|.+
T Consensus 1 P~gV~v~i~~~~v~vkGpk 19 (71)
T d2j01h1 1 PKGVSVEVAPGRVKVKGPK 19 (71)
T ss_dssp CTTCEEEECSSCEEEECSS
T ss_pred CCCEEEEEECCEEEEECCC
T ss_conf 9966999979999999789
No 12
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.81 E-value=12 Score=15.30 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCCEEEEEECCCCEEEEEECCC--CCHHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEE-
Q ss_conf 8843689948993999997011--7702149999621799997303323556621345530230468897386615810-
Q gi|254780621|r 34 YPPYDIERTGENAYRITIAVSG--FHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMS- 110 (157)
Q Consensus 34 ~P~~dI~~~~e~~y~i~~~lPG--~~kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~~- 110 (157)
.+.|.=.++.+ ...|.+.||. .+++||.|++..+.|.|+-.-.. ...++. .-.|...|++..
T Consensus 19 ~~~Y~W~Qt~~-~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~----~~~~~l----------~g~L~~~I~~deS 83 (124)
T d1wgva_ 19 RENYTWSQDYT-DLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEEN----GERVLM----------EGKLTHKINTESS 83 (124)
T ss_dssp CSSCEEEEETT-EEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSS----SEEEEE----------EEEBSSCBCTTTC
T ss_pred CCCEEEEEECC-EEEEEEEECCCCCCHHHEEEEEEECEEEEEEECCC----CCCEEE----------ECCCCCCCCCCCC
T ss_conf 88967996899-99999990888745466799987088999985267----762687----------0710284154455
Q ss_pred -EEEECC-EEEEEEECCC
Q ss_conf -385288-5999974068
Q gi|254780621|r 111 -ASLENG-LLYLELLRSV 126 (157)
Q Consensus 111 -A~~~nG-iLtI~lpK~~ 126 (157)
-+++++ +|.+.+.|..
T Consensus 84 ~w~i~~~~~~i~~lkK~~ 101 (124)
T d1wgva_ 84 LWSLEPGKCVLVNLSKVG 101 (124)
T ss_dssp EEEECTTSEEEEEECBSS
T ss_pred EEEEECCCEEEEEEEECC
T ss_conf 799948988999998458
No 13
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.78 E-value=7.1 Score=16.69 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=13.3
Q ss_pred HHHEEEEEECCEEEEEEEE
Q ss_conf 0214999962179999730
Q gi|254780621|r 58 PSEITIEVDSSILMVRGEK 76 (157)
Q Consensus 58 kedi~V~v~~~~LtI~g~~ 76 (157)
|++++|+++++.++|+|.+
T Consensus 8 P~~V~v~i~~~~v~vkGpk 26 (78)
T d2zjre2 8 PSGVTVNAQDGVFKVKGPK 26 (78)
T ss_dssp CTTCCEECCTTCCEECCSS
T ss_pred CCCCEEEEECCEEEEECCC
T ss_conf 9997999979999999589
Done!