RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780621|ref|YP_003065034.1| small heat shock protein
[Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)



>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
           Escherichia coli inclusion body-associated proteins IbpA
           and IbpB, and similar proteins.  IbpA and IbpB are 16
           kDa small heat shock proteins (sHsps). sHsps are
           molecular chaperones that suppress protein aggregation
           and protect against cell stress, and are generally
           active as large oligomers consisting of multiple
           subunits. IbpA and IbpB are produced during high-level
           production of various heterologous proteins,
           specifically human prorenin, renin and bovine
           insulin-like growth factor 2 (bIGF-2), and are strongly
           associated with inclusion bodies containing these
           heterologous proteins. IbpA and IbpB work as an
           integrated system to stabilize thermally aggregated
           proteins in a disaggregation competent state.  The
           chaperone activity of IbpB is also significantly
           elevated as the temperature increases from normal to
           heat shock. The high temperature results in the
           disassociation of 2-3-MDa IbpB oligomers into smaller
           approximately 600-kDa structures. This elevated activity
           seen under heat shock conditions is retained for an
           extended period of time after the temperature is
           returned to normal. IbpA also forms multimers..
          Length = 90

 Score =  139 bits (353), Expect = 3e-34
 Identities = 56/90 (62%), Positives = 69/90 (76%)

Query: 35  PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKR 94
           PPY+IE+TGEN YRIT+AV+GF   ++ IEV+++ L V G+K  EE E  EYLHRGIAKR
Sbjct: 1   PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKR 60

Query: 95  AFERRFQLADFVEVMSASLENGLLYLELLR 124
           AFER F LAD V+V  A LENGLL ++L R
Sbjct: 61  AFERSFNLADHVKVKGAELENGLLTIDLER 90


>gnl|CDD|30420 COG0071, IbpA, Molecular chaperone (small heat shock protein)
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 146

 Score =  100 bits (249), Expect = 2e-22
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 5/141 (3%)

Query: 1   MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSE 60
            R D   +   + G+D +      L   S+ +  PP DIE T +  YRIT  + G    +
Sbjct: 8   NRFDFFPLLRDSPGFDRLFREFGNL-PESRPTGTPPVDIEETDDE-YRITAELPGVDKED 65

Query: 61  ITIEVDSSILMVRGEKKSEEK-ETVEYLHRGIAKRAFERRFQLADFV--EVMSASLENGL 117
           I I V+ + L +RGE++ EE+ E   YL R  A   FER F+L + V  EV+ A  +NGL
Sbjct: 66  IEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKNGL 125

Query: 118 LYLELLRSVPERMKPRRIEIS 138
           L + L ++ PE  KP+RIEI 
Sbjct: 126 LTVTLPKAEPEEKKPKRIEIE 146


>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
           alpha-crystallin-type small(s) heat shock proteins
           (Hsps). sHsps are small stress induced proteins with
           monomeric masses between 12 -43 kDa, whose common
           feature is the Alpha-crystallin domain  (ACD). sHsps are
           generally active as large oligomers consisting of
           multiple subunits, and are believed to be
           ATP-independent chaperones that prevent aggregation and
           are important in refolding in combination with other
           Hsps..
          Length = 88

 Score = 76.4 bits (189), Expect = 3e-15
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 38  DIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFE 97
           D+  T ++AY +   + GF   +I +EV+  +L + GE++ EE+E   YL R  +  +F 
Sbjct: 1   DVYET-DDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFS 59

Query: 98  RRFQLADFVEV--MSASLENGLLYLEL 122
           R F+L + V+   + ASLENG+L + L
Sbjct: 60  RSFRLPEDVDPDKIKASLENGVLTITL 86


>gnl|CDD|109080 pfam00011, HSP20, Hsp20/alpha crystallin family. 
          Length = 102

 Score = 74.9 bits (185), Expect = 9e-15
 Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 40  ERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERR 99
            +  ++A+ + + V GF P E+ ++V+ + ++V+G+ + EE+E    L    +  +F R+
Sbjct: 2   IKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHE-EEEEDDHGLRSERSYGSFSRK 60

Query: 100 FQLADFVEVM--SASLENGLLYLELLRSVPE-RMKPRRIEIS 138
           F L +  +     ASL++G+L + + +  PE   K RRI+I 
Sbjct: 61  FTLPENADPDKVKASLKDGVLTVTVPKLEPEEPKKERRIQIQ 102


>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
           alpha-crystallin domain (ACD) of alpha-crystallin-type
           small heat shock proteins (sHsps) and a similar domain
           found in p23-like proteins.  sHsps are small stress
           induced proteins with monomeric masses between 12 -43
           kDa, whose common feature is this ACD. sHsps are
           generally active as large oligomers consisting of
           multiple subunits, and are believed to be
           ATP-independent chaperones that prevent aggregation and
           are important in refolding in combination with other
           Hsps. p23 is a cochaperone of the Hsp90 chaperoning
           pathway. It binds Hsp90 and participates in the folding
           of a number of Hsp90 clients including the progesterone
           receptor. p23 also has a passive chaperoning activity.
           p23 in addition may act as the cytosolic prostaglandin
           E2 synthase. Included in this family is the p23-like
           C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
           allele of Skp1 (Sgt1) and  the p23-like domains of human
           butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
           distribution) C, Melusin, and NAD(P)H cytochrome b5
           (NCB5) oxidoreductase (OR)..
          Length = 80

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 9/81 (11%)

Query: 44  ENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLA 103
           ++   +T+ + G    +I +EV+ ++L + G+++ EE+       R  +   FER F+L 
Sbjct: 5   DDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE-------RERSYGEFERSFELP 57

Query: 104 DFVEV--MSASLENGLLYLEL 122
           + V+     ASLENG+L + L
Sbjct: 58  EDVDPEKSKASLENGVLEITL 78


>gnl|CDD|38798 KOG3591, KOG3591, KOG3591, Alpha crystallins [Posttranslational
           modification, protein turnover, chaperones].
          Length = 173

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 28  PSQTSAYPPYDIE--RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE 85
           P   +             ++ + + + V  F P E+ ++ D + L V G  K EEKE  E
Sbjct: 53  PLSRARPLSSGASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEG--KHEEKED-E 109

Query: 86  YLHRGIAKRAFERRFQLADFVEV--MSASL-ENGLLYLELLRSVPERMKPRRIEISQSPQ 142
           +   G   R+F R++ L + V+   ++++L  +G+L +E  +  P++   R I I Q   
Sbjct: 110 H---GYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQVGP 166

Query: 143 ESTKMIE 149
            +     
Sbjct: 167 SALSQKA 173


>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
           alpha-crystallin-type small(s) heat shock proteins
           (Hsps). sHsps are small stress induced proteins with
           monomeric masses between 12 -43 kDa, whose common
           feature is the Alpha-crystallin domain  (ACD). sHsps are
           generally active as large oligomers consisting of
           multiple subunits, and are believed to be
           ATP-independent chaperones that prevent aggregation and
           are important in refolding in combination with other
           Hsps..
          Length = 83

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 39  IERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFER 98
           +    +  +++T+ V GF P E+ ++V  + L+V G+   EE+E       G   R F R
Sbjct: 1   VVNDDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKH--EERED----EHGYVSREFTR 54

Query: 99  RFQLADFV--EVMSASL-ENGLLYLE 121
           R+QL + V  + +++SL  +G+L +E
Sbjct: 55  RYQLPEGVDPDSVTSSLSSDGVLTIE 80


>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
           Saccharomyces cerevisiae (Sc) small heat shock protein
           (Hsp)26 and similar proteins. sHsps are molecular
           chaperones that suppress protein aggregation and protect
           against cell stress, and are generally active as large
           oligomers consisting of multiple subunits. ScHsp26 is
           temperature-regulated, it switches from an inactive to a
           chaperone-active form upon elevation in temperature. It
           associates into large 24-mers storage forms which upon
           heat shock disassociate into dimers. These dimers
           initiate the interaction with non-native substrate
           proteins and re-assemble into large globular assemblies
           having one monomer of substrate bound per dimer. This
           group also contains Arabidopsis thaliana (Ath) Hsp15.7,
           a peroxisomal matrix protein which can complement the
           morphological phenotype of S. cerevisiae mutants
           deficient in Hsps26. AthHsp15.7 is minimally expressed
           under normal conditions and is strongly induced by heat
           and oxidative stress. Also belonging to this group is
           wheat HSP16.9 which differs in quaternary structure from
           the shell-type particles of ScHsp26, it assembles as a
           dodecameric double disc, with each disc organized as a
           trimer of dimers..
          Length = 92

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 45  NAYRITIAVSGFHPSEITIEV-DSSILMVRGEKKSEEKETVEYLHRGIAKRA-FERRFQL 102
            A+     V G    ++ +EV D  +L + GE+K EE++  +  HR       F RRF+L
Sbjct: 9   EAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRL 68

Query: 103 ADFVEV--MSASLENGLL 118
            +  +   + A LENG+L
Sbjct: 69  PENADADEVKAFLENGVL 86


>gnl|CDD|35929 KOG0710, KOG0710, KOG0710, Molecular chaperone (small heat-shock
           protein Hsp26/Hsp42) [Posttranslational modification,
           protein turnover, chaperones].
          Length = 196

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 31  TSAYPPYDIERTGENAYRITIAVSGFHPSEITIEV-DSSILMVRGEKKSEEKETVEYLHR 89
           + A  P+D++ +  +A+   + + G    +I +EV D  +L + GE+K EE+E+      
Sbjct: 81  SEARVPWDVKES-PDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKW 139

Query: 90  GIAKRA---FERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIEIS 138
              +R    F+RRF+L + V+V  + A +ENG+L + + +  P   KP+  +I+
Sbjct: 140 KRVERKLGKFKRRFELPENVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIA 193


>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in
           mammalian HspB3, also known as heat-shock protein
           27-like protein (HSPL27, 17-kDa) and similar proteins.
           sHsps are molecular chaperones that suppress protein
           aggregation and protect against cell stress, and are
           generally active as large oligomers consisting of
           multiple subunits. HspB3 is expressed in adult skeletal
           muscle, smooth muscle, and heart, and in several other
           fetal tissues.  In muscle cells HspB3 forms an
           oligomeric 150 kDa complex with myotonic dystrophy
           protein kinase-binding protein (MKBP/ HspB2), this
           complex may comprise one of two independent muscle-cell
           specific chaperone systems. The expression of HspB3 is
           induced during muscle differentiation controlled by the
           myogenic factor MyoD. HspB3 may also interact with Hsp22
           (HspB8)..
          Length = 83

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 40  ERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERR 99
           +  G+  ++I + V  F P +I I+V    L+++G+      E       G   R+F R+
Sbjct: 2   QEEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDE------HGFISRSFTRQ 55

Query: 100 FQLADFVEV--MSASL-ENGLLYLE 121
           +QL D VE   +SA L  +G+L +E
Sbjct: 56  YQLPDGVEHKDLSAMLCHDGILVVE 80


>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
           alpha crystallin domain (ACD) similar to Lactobacillus
           plantarum (Lp) small heat shock proteins (sHsp) HSP
           18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
           chaperones that suppress protein aggregation and protect
           against cell stress, and are generally active as large
           oligomers consisting of multiple subunits. Transcription
           of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
           regulated by a variety of stresses including heat, cold
           and ethanol. Early growing L. plantarum cells contain
           elevated levels of these mRNAs which rapidly fall of as
           the cells enter stationary phase. Also belonging to this
           group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
           oenis (syn. Leuconostoc oenos) (Oo) HSP18.
           Transcription of the gene encoding BbHSP20 is strongly
           induced following heat or osmotic shock, and that of the
           gene encoding OoHSP18 following heat, ethanol or acid
           shock. OoHSP18 is peripherally associated with the
           cytoplasmic membrane..
          Length = 93

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 38  DIERTGENAYRITIAVSGFHPSEITIEVDSSILMV---RGEKKSEEKETVEYLHRGIAKR 94
           DI+ T ++ Y +   + GF   +I ++     L +   R E K E+ +   Y+ R     
Sbjct: 4   DIKET-DDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYG 62

Query: 95  AFERRFQLADFVEV-MSASLENGLLYLEL 122
           +F R F L +  E  + A  ENG+L + L
Sbjct: 63  SFSRSFYLPNVDEEEIKAKYENGVLKITL 91


>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
           mammalian small heat shock protein (sHsp) HspB9 and
           similar proteins. sHsps are molecular chaperones that
           suppress protein aggregation and protect against cell
           stress, and are generally active as large oligomers
           consisting of multiple subunits. Human (h) HspB9 is
           expressed exclusively in the normal testis and in
           various tumor samples and is a cancer/testis antigen.
           hHspB9  interacts with TCTEL1 (T-complex testis
           expressed protein -1), a subunit of dynein. hHspB9 and
           TCTEL1 are co-expressed in similar cells within the
           testis and in tumor cells. Included in this group is
           Xenopus Hsp30, a developmentally-regulated
           heat-inducible molecular chaperone..
          Length = 87

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 11/85 (12%)

Query: 43  GENAYRITIAVSGFHPSEITIEVDSSILMVRG--EKKSE-EKETVEYLHRGIAKRAFERR 99
           G+  + + + V GF P ++++ VD   L+V G  EKK+E EK +  Y +     + F R 
Sbjct: 5   GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEY-----QEFVRE 59

Query: 100 FQLADFV--EVMSASL-ENGLLYLE 121
            QL + V  E ++ SL  +G L++ 
Sbjct: 60  AQLPEHVDPEAVTCSLSPSGHLHIR 84


>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
           mammalian small (s)heat shock protein (Hsp)-27 (also
           denoted HspB1 in human) and similar proteins. sHsps are
           molecular chaperones that suppress protein aggregation
           and protect against cell stress, and are generally
           active as large oligomers consisting of multiple
           subunits. Hsp27 shows enhanced synthesis in response to
           stress. It is a molecular chaperone which interacts with
           a large number of different proteins. It is found in
           many types of human cells including breast, uterus,
           cervix, platelets and cancer cells. Hsp27 has diverse
           cellular functions including, chaperoning, regulation of
           actin polymerization, keratinocyte differentiation,
           regulation of inflammatory pathways in keratinocytes,
           and protection from oxidative stress through modulating
           glutathione levels. It is also a subunit of
           AUF1-containing protein complexes. It has been linked to
           several transduction pathways regulating cellular
           functions including differentiation, cell growth,
           development, and apoptosis. Its activity can be
           regulated by phosphorylation. Its unphosphorylated state
           is a high molecular weight aggregated form (100-800kDa)
           composed of up to 24 subunits, which forms as a result
           of multiple interactions within the ACD, and is required
           for chaperone function and resistance to oxidative
           stress. Upon phosphorylation these large aggregates
           rapidly disassociate to smaller oligomers and chaperone
           activity is modified.  High constitutive levels of Hsp27
           have been detected in various cancer cells, in
           particular those of carcinoma origin. Over-expression of
           Hsp27 has a protective effect against various
           diseases-processes, including Huntington's disease.
           Mutations in Hsp27 have been associated with a form of
           distal hereditary motor neuropathy type II and
           Charcot-Marie-Tooth disease type 2..
          Length = 86

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 41  RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF 100
           R   + +++++ V+ F P E+ ++    ++ + G  K EEK+       G   R F R++
Sbjct: 6   RQTADRWKVSLDVNHFAPEELVVKTKDGVVEITG--KHEEKQD----EHGFVSRCFTRKY 59

Query: 101 QL---ADFVEVMSASLENGLLYLE 121
            L    D   V S+   +G+L +E
Sbjct: 60  TLPPGVDPTAVTSSLSPDGILTVE 83


>gnl|CDD|30758 COG0409, HypD, Hydrogenase maturation factor [Posttranslational
           modification, protein turnover, chaperones].
          Length = 364

 Score = 29.5 bits (66), Expect = 0.41
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 22  LDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMV-RGEKK--S 78
           +D   AP   S              Y+  I V+GF P +I + V   +  + RGE K  +
Sbjct: 187 IDAFLAPGHVSTIIGTKPYEFLAEKYKFPIVVAGFEPLDILLGVLMLLKQIIRGEAKVEN 246

Query: 79  EEKETVEYLHRGIAKRAFERRFQLADF 105
           E K  V+      A+      F++ D 
Sbjct: 247 EYKRAVKDEGNVKAQELINEVFEVEDS 273


>gnl|CDD|145070 pfam01723, Chorion_1, Chorion protein.  This family consists of the
           chorion superfamily proteins classes A, B, CA, CB and
           high-cysteine HCB from silk, gypsy and polyphemus moths.
           The chorion proteins make up the moths egg shell a
           complex extracellular structure.
          Length = 176

 Score = 29.5 bits (66), Expect = 0.42
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 24  GLGAPSQTSAYPPYDIERTGENAYRITIAVSG 55
           G G    +S+  P  +    EN Y   +AV G
Sbjct: 69  GGGLAVVSSSAAPTGLGIASENRYEGNVAVCG 100


>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
          mammalian small heat shock protein (sHsp) HspB7, also
          known as cardiovascular small heat shock protein
          (cvHsp), and similar proteins. sHsps are molecular
          chaperones that suppress protein aggregation and
          protect against cell stress, and are generally active
          as large oligomers consisting of multiple subunits.
          HspB7 is a 25-kDa protein, preferentially expressed in
          heart and skeletal muscle. It binds the cytoskeleton
          protein alpha-filamin (also known as actin-binding
          protein 280). The expression of HspB7 is increased
          during rat muscle aging.  Its expression is also
          modulated in obesity implicating this protein in this
          and related metabolic disorders. As the human gene
          encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it
          is a positional candidate for several dystrophies and
          myopathies..
          Length = 81

 Score = 27.2 bits (60), Expect = 2.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 41 RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEK 76
          +T  + Y+  + VS F P +I +   ++ + V  EK
Sbjct: 4  KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEK 39


>gnl|CDD|33072 COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy
           production and conversion].
          Length = 382

 Score = 27.1 bits (60), Expect = 2.1
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 44  ENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLA 103
                  I V   HP    IE     L V GEK  +    + Y+HRGI K A    +  A
Sbjct: 4   GGEGEFEIPVGPVHP--GLIEPGHFRLFVDGEKIVDADIRLGYVHRGIEKIAEGLPYNKA 61

Query: 104 DFV 106
            F+
Sbjct: 62  LFL 64


>gnl|CDD|39432 KOG4231, KOG4231, KOG4231, Intracellular membrane-bound
           Ca2+-independent phospholipase A2 [Lipid transport and
           metabolism].
          Length = 763

 Score = 26.6 bits (58), Expect = 3.4
 Identities = 11/85 (12%), Positives = 22/85 (25%)

Query: 5   VSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64
           +     SA   + V S L  +    Q   + P        +     I +      E  I+
Sbjct: 657 LIESICSATDTEEVHSTLLPMLPEIQYFRFNPVMDRCMELDETDPEILLQLEAAIEEYIQ 716

Query: 65  VDSSILMVRGEKKSEEKETVEYLHR 89
            +        E+ +      +    
Sbjct: 717 RNPQKFKNVAERLTLPFLNDQKWCD 741


>gnl|CDD|144313 pfam00667, FAD_binding_1, FAD binding domain.  This domain is found
           in sulfite reductase, NADPH cytochrome P450 reductase,
           Nitric oxide synthase and methionine synthase reductase.
          Length = 217

 Score = 26.1 bits (58), Expect = 3.8
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 79  EEKETVEYLHRGIAKRAFER-RFQLAD-FVEVM----SASLENGLLYLELLRSVPERMKP 132
           EEK+ +E L     KR ++R +   A   +EV+    SA L    L LELL     R++P
Sbjct: 123 EEKQRLEALVSDAGKREYKRWKLNKARTLLEVLEEFPSAKLPAEFL-LELLP----RLQP 177

Query: 133 RRIEISQSP 141
           R   IS SP
Sbjct: 178 RYYSISSSP 186


>gnl|CDD|145215 pfam01924, HypD, Hydrogenase formation hypA family.  HypD is
           involved in hydrogenase formation. It contains many
           possible metal binding residues, which may bind to
           nickel. Transposon Tn5 insertions into hypD resulted in
           R. leguminosarum mutants that lacked any hydrogenase
           activity in symbiosis with peas.
          Length = 355

 Score = 25.5 bits (57), Expect = 6.6
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 21/96 (21%)

Query: 22  LDGLGAPSQTSA---YPPYD--IERTGENAYRITIAVSGFHPSEITIEVDSSILM----- 71
           +DG   P   S      PY+   E      Y + + V+GF P    +++  +ILM     
Sbjct: 180 IDGFIGPGHVSTIIGTEPYEFLAEE-----YGVPVVVAGFEP----LDILQAILMLVRQL 230

Query: 72  VRGEKK--SEEKETVEYLHRGIAKRAFERRFQLADF 105
             G  +  ++    V+      A+      F++ D 
Sbjct: 231 NEGRAEVENQYTRAVKPEGNLKAQALIAEVFEVRDA 266


>gnl|CDD|34244 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal
           domain [General function prediction only].
          Length = 411

 Score = 25.4 bits (55), Expect = 8.0
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 60  EITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF 100
                VD+  L    E+  ++  + E LH     +  E+R 
Sbjct: 371 PKLKSVDNLALKKMLEEYVKDPLSHELLHTKYKVQIVEKRL 411


>gnl|CDD|143166 cd00098, IgC, Immunoglobulin Constant domain.  IgC:
          Immunoglobulin constant domain (IgC). Members of the
          IgC family are components of immunoglobulin, T-cell
          receptors, CD1 cell surface glycoproteins, secretory
          glycoproteins A/C, and Major Histocompatibility Complex
          (MHC) class I/II molecules. In immunoglobulins, each
          chain is composed of one variable domain (IgV) and one
          or more IgC domains. These names reflect the fact that
          the variability in sequences is higher in the variable
          domain than in the constant domain. The IgV domain is
          responsible for antigen binding, and the IgC domain is
          involved in oligomerization and molecular interactions.
          Length = 95

 Score = 25.1 bits (55), Expect = 9.2
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 32 SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG 90
             PP   E  G +   +T   +GF+P +IT+       +  G++ +    T   +   
Sbjct: 2  FLLPPSPEELLGGSV-TLTCLATGFYPPDITVT-----WLKNGKELTSGVTTTPPVPNS 54


>gnl|CDD|30994 COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7
           [Energy production and conversion].
          Length = 398

 Score = 25.1 bits (55), Expect = 9.6
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 37  YDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAF 96
           + ++R+ EN   + +     HPS  T  V   IL + GE   +    + YLHRG+ K A 
Sbjct: 3   WGMKRSEENTENMFLNFGPQHPS--THGVLRLILELDGEIVVDADPDIGYLHRGMEKLA- 59

Query: 97  ERRF 100
           E R 
Sbjct: 60  ENRT 63


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.131    0.348 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,751,147
Number of extensions: 84730
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 32
Length of query: 157
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,405,363
Effective search space: 312780773
Effective search space used: 312780773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)