RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780621|ref|YP_003065034.1| small heat shock protein
[Candidatus Liberibacter asiaticus str. psy62]
(157 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 82.0 bits (202), Expect = 6e-17
Identities = 30/128 (23%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 15 YDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVD-SSILMVR 73
+ +++ + G G+ + A D + T A+ + G E+ +EV+ ++L+V
Sbjct: 24 FRSIVPAISGGGSETAAFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVS 82
Query: 74 GEKKS-EEKETVEYLHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERM 130
GE+ +E + ++ + F RRF+L + +V + A LENG+L + + ++ ++
Sbjct: 83 GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP 142
Query: 131 KPRRIEIS 138
+ + I+IS
Sbjct: 143 EVKAIQIS 150
>1shs_A Small heat shock protein; chaperone, beta-sandwich, structural
genomics, PSI, protein structure initiative; 2.90A
{Methanocaldococcus jannaschii} SCOP: b.15.1.1
Length = 147
Score = 79.4 bits (195), Expect = 4e-16
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 21 MLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSE- 79
+ G + P I + ++ + G + +I + L +R ++
Sbjct: 29 IQSSTGIQISGKGFMPISIIEG-DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLM 87
Query: 80 -EKETVEYLHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIE 136
+ + R +L V+ SA ENG+L + L ++ E + I
Sbjct: 88 ITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKA--ESSIKKGIN 145
Query: 137 I 137
I
Sbjct: 146 I 146
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 75.3 bits (185), Expect = 6e-15
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 41 RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF 100
R+ + + I + V F P ++T++V + + G+ + G R F RR+
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQD------DHGYISREFHRRY 61
Query: 101 QLADFVEVMSAS---LENGLLYLE---LLRSVPERMKPRRIEISQ 139
+L V+ + S +G+L + V R I +S+
Sbjct: 62 RLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVSR 106
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 74.5 bits (183), Expect = 9e-15
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 36 PYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRA 95
Y++ + G +++ V F EITI+ D + L+VR +K + +
Sbjct: 103 AYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGD-------AAMSES 155
Query: 96 FERRFQLADFV---EVMSASLENGLLYLELLRSVPERMKPRRIEISQSPQESTKMIEEKK 152
R L V + + + +L +E + P + I++S + + E ++
Sbjct: 156 VGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNY---KAIKLSPEKGLAIQPSEVQE 212
Query: 153 KSVA 156
+ +A
Sbjct: 213 RQLA 216
Score = 65.2 bits (159), Expect = 7e-12
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 28 PSQTSAYPPYDIERTGENAYRITIAVS---GFHPSEITIEVDSSILMVRGEKKSEEKETV 84
+I + + +I + + F P ++ + + + V G EEK
Sbjct: 214 QLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEK--- 270
Query: 85 EYLHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLEL 122
R F + F + V+ A + +GL+ +E
Sbjct: 271 TENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA 310
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV}
Length = 100
Score = 70.1 bits (171), Expect = 2e-13
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE-YLHRGIAK 93
P DI+ N + + + G PS+I +++D IL +RGE+KSE E +
Sbjct: 5 PRVDIKEE-VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRY 63
Query: 94 RAFERRFQLADFVEV--MSASLENGLLYLEL 122
+F RRF L D + ++A+ NG+L + +
Sbjct: 64 GSFHRRFALPDSADADGITAAGRNGVLEIRI 94
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 67.2 bits (164), Expect = 2e-12
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 41 RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF 100
T + + + V F P EI+++V + V + E G R F RR+
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDE------HGFIAREFHRRY 60
Query: 101 QLADFV---EVMSASLENGLLYLELLRSVPERMKP 132
+L V V SA G+L ++ + + P
Sbjct: 61 RLPPGVDPAAVTSALSPEGVLSIQATPASAQASLP 95
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii str} PDB: 3aac_A
Length = 123
Score = 66.6 bits (162), Expect = 3e-12
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 21 MLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEE 80
+ L YPP D+ + ++GF+ +I V ++ ++
Sbjct: 11 RSEELSRGFYELVYPPVDMYEE-GGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREIT 69
Query: 81 KETVEYLHRGIAKRAFERRFQLADFV---EVMSASLENGLLYLELLRSVPERMK 131
+ + + + +L V +S ENG+L + + + K
Sbjct: 70 EP--GVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens}
Length = 175
Score = 60.5 bits (146), Expect = 2e-10
Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87
++ R ++ + + + V F P E+ ++V ++ V G+ + +
Sbjct: 57 APSWFDTGLSEM-RLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQD------ 109
Query: 88 HRGIAKRAFERRFQLADFVE---VMSASLENGLLYLELLRSVPERMKPRRIEISQSPQES 144
G R F R++++ V+ + S+ +G+L + R R I I++ + +
Sbjct: 110 EHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSG-PERTIPITREEKPA 168
Query: 145 TKMIEEK 151
+K
Sbjct: 169 VTAAPKK 175
>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein,
disease mutation, eye lens protein, methylation,
polymorphism, glycoprotein; 2.63A {Homo sapiens}
Length = 94
Score = 56.4 bits (136), Expect = 2e-09
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 41 RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF 100
R ++ + + + V F P E+ ++V ++ V G+ + + E G R F R++
Sbjct: 6 RLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDE------HGFISREFHRKY 59
Query: 101 QLADFV---EVMSASLENGLLYLELLRSVPERMKPRR 134
++ V + S+ +G+L + R + P R
Sbjct: 60 RIPADVDPLTITSSLSSDGVLTVNGPR--KQVSGPER 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.5 bits (84), Expect = 0.002
Identities = 35/200 (17%), Positives = 60/200 (30%), Gaps = 89/200 (44%)
Query: 4 DVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVS--------- 54
D +++ G + +L L+ PS T P D Y ++I +S
Sbjct: 204 DAEKVFTQ--GLN-ILEWLEN---PSNT---PDKD--------YLLSIPISCPLIGVIQL 246
Query: 55 ----------GFHPSEI-------T-----IEVDSSILMVRGEKKSEE------KETVEY 86
GF P E+ T + +I S E ++ +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD----SWESFFVSVRKAITV 302
Query: 87 LHRGIAKR---AFERRFQLADFVEVMSASLENG------LL------------YLELL-R 124
L I R A+ L ++ SLEN +L Y+
Sbjct: 303 LFF-IGVRCYEAYPNTS-LPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 125 SVPERMKPRRIEIS--QSPQ 142
+P +++EIS +
Sbjct: 359 HLPAG---KQVEISLVNGAK 375
Score = 27.2 bits (60), Expect = 1.6
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 39/134 (29%)
Query: 38 DIERT---GENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLH-RGIAK 93
+ E G + + +A ++ T+ ++ K+ Y+ R +AK
Sbjct: 90 EFENCYLEGNDIH--ALAAKLLQENDTTLVKTKELI------KN-------YITARIMAK 134
Query: 94 RAFERRFQLADFVEVMS--ASLE-------NGLLYLELLRSV-----P------ERMKPR 133
R F+++ A F V A L N Y E LR + +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 134 RIEISQSPQESTKM 147
E+ ++ ++ K+
Sbjct: 195 LSELIRTTLDAEKV 208
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport,
respiratory chain, 4Fe- 4S, cell membrane,
flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus
thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4*
Length = 409
Score = 30.6 bits (68), Expect = 0.15
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 48 RITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERR 99
+T+ V HPS T V ++ + GE+ E + YLH G K E R
Sbjct: 25 VMTLNVGPQHPS--THGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTM-EHR 73
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 30.0 bits (67), Expect = 0.23
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 6 SRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEV 65
+R L+ L + Q Y + E N + V+ FHP I I++
Sbjct: 2 ARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPN--ILNCYVTQFHPPHIEIQM 59
Query: 66 DSSILMVRGEKKSE 79
+ + + S+
Sbjct: 60 LKNGKKIPKVEMSD 73
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* 2j6e_A*
Length = 457
Score = 29.8 bits (66), Expect = 0.29
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 26 GAPSQTSAY--PPYDIERTGENAYRITIAVSGFHPSEITIEVDSS 68
G P + Y PP E T +N +T V GF+PS+I +E +S+
Sbjct: 351 GQPREPQVYTLPPSRDELT-KNQVSLTCLVKGFYPSDIAVEWESN 394
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 28.7 bits (63), Expect = 0.63
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 7 RIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64
+ + ++ ++++ + + E A + VSGF P I +
Sbjct: 379 TLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLM 436
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 27.4 bits (59), Expect = 1.5
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 93 KRAFERRFQLADFVEVMSASLENGLLYLELLRSVPERMK 131
A+ F L +++S L++G R + M+
Sbjct: 237 NDAWAATFSLPAAQQLISGGLKDGAQTPAGERDLEGLMR 275
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 27.5 bits (59), Expect = 1.6
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 13 VGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64
+ +S G Q PP E T +T V GF+PS+I +E
Sbjct: 410 APIEKTISKAKGQPREPQVYTLPPSREEMTKNQVS-LTCLVKGFYPSDIAVE 460
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 26.9 bits (59), Expect = 2.2
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 8/82 (9%)
Query: 9 YNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSS 68
+N + S P + + + N V P + I
Sbjct: 71 HNLNIMIKRYNSTAATNEVPE-VTVFSKSPVTLGQPNTLICL--VDNIFPPVVNIT---- 123
Query: 69 ILMVRGEKKSEEKETVEYLHRG 90
+ G+ +E +L +
Sbjct: 124 -WLSNGQSVTEGVSETSFLSKS 144
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module,
beta-sandwich, laminaribiose; HET: BGC; 1.0A
{Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A*
1o8s_A* 1o8p_A
Length = 168
Score = 26.5 bits (58), Expect = 2.4
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 37 YDIERTGENAYRITIAVSGFHPSEITIEVDS 67
Y G+ A +T V+ + + I + + S
Sbjct: 82 YKNIDFGDGATSVTARVATQNATTIQVRLGS 112
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 26.0 bits (56), Expect = 3.9
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 10 NSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64
+ + G P + P+ E + + V GF P +I I
Sbjct: 100 ELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCL-VRGFRPRDIEIR 153
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B*
Length = 512
Score = 25.8 bits (56), Expect = 4.3
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 76 KKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSA 111
+ K + L R +A R ++R + V+ +
Sbjct: 395 TAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRAL 430
>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis,
electron transfer, oxidoreductase, molybdoenzymes,
molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP:
d.176.1.1 PDB: 1xdq_A*
Length = 298
Score = 25.9 bits (56), Expect = 4.3
Identities = 11/66 (16%), Positives = 20/66 (30%)
Query: 36 PYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRA 95
P D N Y + + + +++ D L + GE + L R
Sbjct: 36 PADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEE 95
Query: 96 FERRFQ 101
R +
Sbjct: 96 RIYRMR 101
>1y2o_A Baiap2, BAI1-associated protein 2 isoform 1; cell motility,
filopodia, actin bundling, signaling protein; 2.20A
{Homo sapiens} SCOP: a.238.1.3 PDB: 1wdz_A
Length = 250
Score = 25.8 bits (56), Expect = 4.5
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 75 EKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYL----ELLRSVPERM 130
K+ E + V ++ A RRF VE A +N Y ELL
Sbjct: 170 NKQGELENYVSDGYK-TALTEERRRFC--FLVEKQCAVAKNSAAYHSKGKELLAQKLPLW 226
Query: 131 KPRRIEISQSPQESTKMIEEKKKS 154
+ + S+ P+ + +++++ +
Sbjct: 227 QQACADPSKIPERAVQLMQQVASN 250
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 25.8 bits (56), Expect = 4.6
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 102 LADFVEVMSASLENGLLYLELLRSVPERMKPRR 134
DFV+ S S+E L P+ R
Sbjct: 94 NGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLR 126
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase
maturation, [4Fe-4S] cluster, thiol redox; HET: CSW;
2.07A {Thermococcus kodakarensis KOD1}
Length = 372
Score = 25.4 bits (56), Expect = 5.6
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 22 LDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEK---KS 78
GL AP S Y I V+GF P+++ + + I M + + +
Sbjct: 194 FQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAGFEPNDVLMAILMLIRMYKEGEARIIN 253
Query: 79 EEKETVEYLHRGIAKRAFERRFQLADF 105
E + V+Y +A++ ++ F++ D
Sbjct: 254 EYERAVKYEGNVVAQKMIDKFFEVVDA 280
>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1;
voltage sensor, voltage dependent, ION channel, shaker,
membrane protein; HET: NAP PGW; 2.40A {Rattus
norvegicus} PDB: 2a79_B*
Length = 514
Score = 24.8 bits (53), Expect = 8.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 20 SMLDGLGAP-SQTSAYPP-----YDIERTGENAYRITIAVSGFH 57
SM G P + +A P YD E E++ R+ I +SG
Sbjct: 19 SMTVATGDPVDEAAALPGHPQDTYDPEADHESSERVVINISGLR 62
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831,
PSI, protein structure initiative; 2.50A {Neisseria
meningitidis serogroup A} SCOP: c.141.1.1
Length = 371
Score = 24.9 bits (54), Expect = 9.1
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 12 AVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRI 49
S+L+ + +E T N +
Sbjct: 328 FENIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHL 365
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.131 0.348
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,268,747
Number of extensions: 55738
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 31
Length of query: 157
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 72
Effective length of database: 3,632,490
Effective search space: 261539280
Effective search space used: 261539280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.8 bits)