HHsearch alignment for GI: 254780622 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=94.60 E-value=0.38 Score=27.16 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=39.1
Q ss_pred CCCCCEEEEEEEC-HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8885569999528-478999999999999879889998585686306989999974--7975820767887787743001
Q gi|254780622|r 2 DLSGKKIALIMCG-SVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAIS--NRRVYTHLLSYKEGYESNHIQL 78 (405)
Q Consensus 2 ~l~~k~IllgvtG-siaa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~~l~~lt--~~~v~~~~~~~~~~~~~~Hi~l 78 (405)
T Consensus 11 ~~~gk~v~V~GlG~sG-----~s~a~~L~~~G~~v~~~D~~~~~~--~~~~~~~l~~~g~~~~~g---~~------~~~~ 74 (481)
T PRK01438 11 DWSGLRVVVAGLGVSG-----FPAADALHELGASVTVVADGDDDR--SRERAALLEVLGATVRLG---DG------ETTL 74 (481)
T ss_pred HCCCCEEEEEEECHHH-----HHHHHHHHHCCCEEEEEECCCCCC--CHHHHHHHHHCCCEEEEC---CC------HHHH
T ss_conf 7189989999575889-----999999996799899997998744--868999888549889968---87------5666
Q ss_pred CCCCCEEEEEEC
Q ss_conf 144655788411
Q gi|254780622|r 79 ANECDLLVVAPA 90 (405)
Q Consensus 79 ~~~aD~~iVaPa 90 (405)
T Consensus 75 ~~~~d~vV~SPG 86 (481)
T PRK01438 75 PEGTELVVTSPG 86 (481)
T ss_pred HCCCCEEEECCC
T ss_conf 248999998997