HHsearch alignment for GI: 254780622 and conserved domain: TIGR01283
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=94.42 E-value=0.071 Score=31.85 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=48.8
Q ss_pred CCCCCCCCEEEEEECC-CHHEECCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-C--------CCCEEEEEH
Q ss_conf 3200179778984042-01010213576215772788999999982588389984156677-6--------567467546
Q gi|254780622|r 186 KELLLKGKRALVTSGP-TYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIA-D--------PPNVMTIHV 255 (405)
Q Consensus 186 ~~~~l~gk~vlITaG~-T~E~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~g~~~~~-~--------~~~~~~i~v 255 (405)
T Consensus 331 yR~~L~GKkaaiY~GGa~Ks-----------------wSlv~Al~dLGMeVV~~GTqkg~~EDy~~I~e~~~~~~~m~Dd 393 (470)
T TIGR01283 331 YRERLKGKKAAIYTGGAVKS-----------------WSLVSALQDLGMEVVATGTQKGTEEDYERIRELMGEGTVMLDD 393 (470)
T ss_pred HHHHHCCCEEEEECCCHHHH-----------------HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 89973498899865864789-----------------9999888457917999830079888999999970799678625
Q ss_pred HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 577899999985058887997
Q gi|254780622|r 256 ERAEDMLQEVLKALPVDIAVM 276 (405)
Q Consensus 256 ~t~~em~~~~~~~~~~D~~I~ 276 (405)
T Consensus 394 ~~p~~L~~~~~~~-~ADllia 413 (470)
T TIGR01283 394 ANPRELLKLLLEY-KADLLIA 413 (470)
T ss_pred CCHHHHHHHHHHH-CCCEEEE
T ss_conf 8878999999872-8988985