HHsearch alignment for GI: 254780622 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.81 E-value=0.0021 Score=41.75 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=20.2
Q ss_pred EEEECHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 99528478999999999999879889998585
Q gi|254780622|r 10 LIMCGSVAVYKSLDLIRRLRERGAVVIPVMTK 41 (405)
Q Consensus 10 lgvtGsiaa~k~~~l~~~L~~~g~~V~vv~T~ 41 (405)
T Consensus 6 TGgtGfi----G~~l~~~L~~~G~~V~~l~r~ 33 (328)
T TIGR03466 6 TGATGFV----GSAVVRLLLERGEEVRVLVRP 33 (328)
T ss_pred ECCCCHH----HHHHHHHHHHCCCEEEEEECC
T ss_conf 8677799----999999999784989999899