HHsearch alignment for GI: 254780622 and conserved domain: cd05313
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.28 E-value=0.26 Score=28.18 Aligned_cols=66 Identities=24% Similarity=0.344 Sum_probs=44.9
Q ss_pred HHHHHHCCCCCCCCCCEEEEEECCCHHEECCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEEEHH
Q ss_conf 9986310132001797789840420101021357621577278899999998258838998415-667765674675465
Q gi|254780622|r 178 ITWLLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGP-VSIADPPNVMTIHVE 256 (405)
Q Consensus 178 ~~~~~~~~~~~~l~gk~vlITaG~T~E~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~g~-~~~~~~~~~~~i~v~ 256 (405)
T Consensus 24 ~~~~~~~~~~~~l~g~~vaIQG-----------------fGnVG~~aA~~l~e~GakvVaVsD~~G~i~~~~Gld~~~l~ 86 (254)
T cd05313 24 FVEEMLKDRNETLKGKRVAISG-----------------SGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLA 86 (254)
T ss_pred HHHHHHHHCCCCCCCCEEEEEC-----------------CCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHH
T ss_conf 9999999679695899999989-----------------77999999999997799799998578508879999889999
Q ss_pred HHHH
Q ss_conf 7789
Q gi|254780622|r 257 RAED 260 (405)
Q Consensus 257 t~~e 260 (405)
T Consensus 87 ~l~~ 90 (254)
T cd05313 87 ELKE 90 (254)
T ss_pred HHHH
T ss_conf 9999