RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780622|ref|YP_003065035.1| bifunctional
phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(405 letters)
>gnl|CDD|172484 PRK13982, PRK13982, bifunctional
SbtC-like/phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Provisional.
Length = 475
Score = 471 bits (1214), Expect = e-133
Identities = 204/404 (50%), Positives = 274/404 (67%), Gaps = 7/404 (1%)
Query: 2 DLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVY 61
L+ K++ LI+ G +A YK+LDLIRRL+ERGA V V+TK+AQ+F+TPL A+S +RVY
Sbjct: 67 SLASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSGQRVY 126
Query: 62 THLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVLI 121
T L + +++ HI+LA +CDL+VVAPA+A+ +A +A+G+ DLASAILLA ++P+L+
Sbjct: 127 TDLFDPESEFDAGHIRLARDCDLIVVAPATADLMAKMANGLADDLASAILLAA-NRPILL 185
Query: 122 APAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWL 181
APAMN +MW PAT+RNV L++DG + IGP +G MAE GVGRM+EP +I L
Sbjct: 186 APAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEAL 245
Query: 182 LYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGP 241
L + L G+R L+T+GPT+EP+DP+RYIANRSSG+QG AIA + A GAEV LISGP
Sbjct: 246 LRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305
Query: 242 VSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGDT 301
V +ADP V IHVE A ML V ALP DIA+ +AV+DWR G K+K+ G
Sbjct: 306 VDLADPQGVKVIHVESARQMLAAVEAALPADIAIFAAAVADWRVATEGGQKLKKGAAG-P 364
Query: 302 MRIDLMENPDILKIIGHH-QCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPD 360
+ L+ENPDIL I + RP +V+GFAAET+ + NAR KL KG D+IV+N + P
Sbjct: 365 PPLQLVENPDILATISKLAENRPPLVIGFAAETEHLIDNARAKLARKGCDWIVANDVSPA 424
Query: 361 TGFVGKEWNKVSIVFPD----KIEEYPELPKAEVADRLCHLIVE 400
TG +G + N V ++ D K+E +P + K EVA L I
Sbjct: 425 TGVMGGDRNTVHLLSRDGDAEKVESWPVMTKDEVATALVARIAS 468
>gnl|CDD|180143 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated.
Length = 399
Score = 459 bits (1184), Expect = e-130
Identities = 181/404 (44%), Positives = 251/404 (62%), Gaps = 10/404 (2%)
Query: 1 MDLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRV 60
L+GK+I L + G +A YK+L+L+RRLR+ GA V VMT++A+KF+TPL A+S V
Sbjct: 2 RMLAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSGNPV 61
Query: 61 YTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVL 120
T L HI+LA DL+++APA+A+ IA +AHG+ DL + LLA PVL
Sbjct: 62 STDLWDPAAEAAMGHIELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLAT-TAPVL 120
Query: 121 IAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITW 180
+APAMN MW PATQRN+ L+ G IGP SG +A G GRM+EP +I+
Sbjct: 121 VAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLA-CGDVGPGRMAEPEEIVAAAER 179
Query: 181 LLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG 240
L L GKR L+T+GPT EP+DP+RYI NRSSG+ G+A+A++ A GA+V L+SG
Sbjct: 180 ALSPKD---LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSG 236
Query: 241 PVSIADPPNVMTIHVERAEDMLQEVLKALP-VDIAVMVSAVSDWRFPKIAGTKIKRKDIG 299
PV++ P V I VE A++ML VL ALP DI +M +AV+D+R +A KIK+ +
Sbjct: 237 PVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGE-- 294
Query: 300 DTMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILP 359
+ ++L+ NPDIL + + + VVGFAAET + + AR KL KG D IV+N +
Sbjct: 295 GELTLELVPNPDILAEVAALKDKRPFVVGFAAETGDVLEYARAKLKRKGLDLIVANDVSA 354
Query: 360 DTGFVGKEWNKVSIVFPDKIEEY-PELPKAEVADRLCHLIVEHL 402
GF G + N+V++++ D E P + K E+A RL I E L
Sbjct: 355 GGGF-GSDDNEVTLIWSDGGEVKLPLMSKLELARRLLDEIAERL 397
>gnl|CDD|161911 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine
decarboxylase/phosphopantothenate--cysteine ligase,
prokaryotic. This model represents a bifunctional
enzyme that catalyzes the second and third steps
(cysteine ligation, EC 6.3.2.5, and decarboxylation, EC
4.1.1.36) in the biosynthesis of coenzyme A (CoA) from
pantothenate in bacteria. In early descriptions of this
flavoprotein, a ts mutation in one region of the protein
appeared to cause a defect in DNA metaobolism rather
than an increased need for the pantothenate precursor
beta-alanine. This protein was then called dfp, for
DNA/pantothenate metabolism flavoprotein. The authors
responsible for detecting phosphopantothenate--cysteine
ligase activity suggest renaming this bifunctional
protein coaBC for its role in CoA biosynthesis. This
enzyme contains the FMN cofactor, but no FAD or pyruvoyl
group. The amino-terminal region contains the
phosphopantothenoylcysteine decarboxylase activity.
Length = 390
Score = 342 bits (878), Expect = 1e-94
Identities = 161/395 (40%), Positives = 245/395 (62%), Gaps = 13/395 (3%)
Query: 3 LSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYT 62
L KKI L + G +A YK+++L+R L +GA V +MT++A+KFITPL + A+S +V T
Sbjct: 1 LENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSGHKVVT 60
Query: 63 HLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVLIA 122
L E + + HI LA DL+++APA+AN I+ +AHG+ DL S LA P+++A
Sbjct: 61 ELWGPIE-HNALHIDLAKWADLILIAPATANTISKIAHGIADDLVSTTALA-ASAPIILA 118
Query: 123 PAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLL 182
PAMN M+ PA Q N++ L+ DG FI P+SG +A + G GR++EP I++
Sbjct: 119 PAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGD-EGKGRLAEPETIVKAAEREF 177
Query: 183 YKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPV 242
S + L+GKR L+T+GPT EP+DP+R+I+N SSG+ G A+A++ GA+V LI+GPV
Sbjct: 178 --SPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235
Query: 243 SIADPPNVMTIHVERAEDMLQEVLKAL--PVDIAVMVSAVSDWRFPKIAGTKIKRKDIGD 300
S+ PP V +I V AE+ML+ L L DI + +AV+D++ + KIK++ G+
Sbjct: 236 SLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQ--GE 293
Query: 301 TMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQ-CIEQNAREKLLNKGADFIVSNCILP 359
+ + L++NPDI+ + + ++VGF AET + + A+EKL K D IV+N +
Sbjct: 294 ELSLKLVKNPDIIAEVRKIKKHQ-VIVGFKAETNDDLIKYAKEKLKKKNLDMIVANDVS- 351
Query: 360 DTGFVGKEWNKVSIVFPDKIEEYPELPKAEVADRL 394
GF G + N+V I +E P + K EVA+R+
Sbjct: 352 QRGF-GSDENEVYIFSKHGHKELPLMSKLEVAERI 385
>gnl|CDD|180924 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase;
Validated.
Length = 182
Score = 198 bits (505), Expect = 2e-51
Identities = 75/183 (40%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Query: 5 GKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHL 64
K I L + GS+A YK+ DL +L +RG V +MTK+A KFITPL + +S V+ +
Sbjct: 1 MKNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSKNPVHLDV 60
Query: 65 LSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQ-PVLIAP 123
+ + NHI+LA DL +VAPA+AN IA +AHG+ DL +++ LA P LIAP
Sbjct: 61 MDEHDPKLMNHIELAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAP 120
Query: 124 AMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLLY 183
AMN M+ PATQRN++ L++DG I P+ G +A G G +++ I+ I L
Sbjct: 121 AMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLA-CGDEGYGALADIETILETIENTLK 179
Query: 184 KSK 186
+
Sbjct: 180 EKT 182
>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase,
streptococcal. In most bacteria, a single bifunctional
protein catalyses phosphopantothenoylcysteine
decarboxylase and phosphopantothenate--cysteine ligase
activities, sequential steps in coenzyme A biosynthesis
(see TIGR00521). These activities reside in separate
proteins encoded by tandem genes in some bacterial
lineages. This model describes proteins from the genera
Streptococcus and Enterococcus homologous to the
N-terminal region of TIGR00521, corresponding to
phosphopantothenoylcysteine decarboxylase activity.
Length = 177
Score = 131 bits (332), Expect = 3e-31
Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 2/174 (1%)
Query: 6 KKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHLL 65
KKI L + GS+A YK+ DL +L + G V +MT++A +FITPL + +S V+ ++
Sbjct: 1 KKILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDVM 60
Query: 66 SYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQ-PVLIAPA 124
+ NHI+LA + DL +VAPASAN IAH+AHG ++ +++ LA + P LIAPA
Sbjct: 61 DEHDPKVINHIELAKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPA 120
Query: 125 MNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQI 178
MN M+ P TQRN++IL+K G I P+ +A YG G +++ DI++ I
Sbjct: 121 MNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA-CGDYGRGALADLDDILQTI 173
>gnl|CDD|166137 PLN02496, PLN02496, probable phosphopantothenoylcysteine
decarboxylase.
Length = 209
Score = 73.5 bits (180), Expect = 9e-14
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 7 KIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHLLS 66
+I L GSVA K +L E A V V+TK++ FI + + +YT
Sbjct: 21 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVVTKASLHFIDRASLP--KDVTLYTDEDE 77
Query: 67 Y----KEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLA-KGDQPVLI 121
+ K G HI+L D++V+AP SAN + +A G+ +L + I+ A +P+ +
Sbjct: 78 WSSWNKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFV 137
Query: 122 APAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEP 171
APAMN MW P T+R++ + + G I P + +A YG G M+EP
Sbjct: 138 APAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLA-CGDYGNGAMAEP 186
>gnl|CDD|180673 PRK06732, PRK06732, phosphopantothenate--cysteine ligase;
Validated.
Length = 229
Score = 68.5 bits (168), Expect = 3e-12
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 42/236 (17%)
Query: 196 LVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSI--ADPPNVMTI 253
L+TSG T EP+D +R I N S+GQ G IA++ G EV L++ ++ PN+ I
Sbjct: 4 LITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPEPHPNLSII 63
Query: 254 HVERAEDMLQEVLKALP-VDIAVMVSAVSDWR------FPKIAGT--------------K 292
+E +D+L+ + + D+ + AVSD+ +++ + K
Sbjct: 64 EIENVDDLLETLEPLVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFLTKQNTEAK 123
Query: 293 IKRKDIGDTMRIDLMENPDILKIIGH-HQCRPSIV-VGF-----AAETQCIEQNAREKLL 345
I D + L + P K+I + + P+I VGF ++ + I + AR L+
Sbjct: 124 ISSAS--DYQVLFLKKTP---KVISYVKKWNPNITLVGFKLLVNVSKEELI-KVARASLI 177
Query: 346 NKGADFIVSNCILPDTGFVGKEWNKVSIVFPDKIEEYPELPKAEVADRLCHLIVEH 401
AD+I++N D + + +K +V K E Y K E+AD L I ++
Sbjct: 178 KNQADYILAN----DLTDISADQHKALLV--SKNEVYTAQTKEEIADLLLERIEKY 227
>gnl|CDD|131169 TIGR02114, coaB_strep, phosphopantothenate--cysteine ligase,
streptococcal. In most bacteria, a single bifunctional
protein catalyses phosphopantothenoylcysteine
decarboxylase and phosphopantothenate--cysteine ligase
activities, sequential steps in coenzyme A biosynthesis
(see TIGR00521). These activities reside in separate
proteins encoded by tandem genes in some bacterial
lineages. This model describes proteins from the genera
Streptococcus and Enterococcus homologous to the
C-terminal region of TIGR00521, corresponding to
phosphopantothenate--cysteine ligase activity.
Length = 227
Score = 61.0 bits (148), Expect = 5e-10
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 196 LVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPP--NVMTI 253
LVTSG T EP+D +R I N S+G G I ++ G EV L++ ++ P N+
Sbjct: 3 LVTSGGTSEPIDSVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALKPEPHPNLSIR 62
Query: 254 HVERAEDMLQEVLKALP-VDIAVMVSAVSDW------------------RFPKIAGTKIK 294
+E +D+L + + + DI + AVSD+ F + K
Sbjct: 63 EIETTKDLLITLKELVQEHDILIHSMAVSDYTPVYMTDLEQVQASDNLNEFLSKQNHEAK 122
Query: 295 RKDIGDTMRIDLMENPDILKIIGHHQCRPSIV-VGFAAETQCIEQN----AREKLLNKGA 349
+ + L + P ++ ++ + P I VGF ++ AR L+ A
Sbjct: 123 ISSTSEYQVLFLKKTPKVISLV--KEWNPQIHLVGFKLLVNVTQEELVKVARASLIKNQA 180
Query: 350 DFIVSN 355
DFI++N
Sbjct: 181 DFILAN 186
>gnl|CDD|181997 PRK09620, PRK09620, hypothetical protein; Provisional.
Length = 229
Score = 54.9 bits (132), Expect = 4e-08
Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 35/191 (18%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG-----PVSI 244
+KGK+ L+TSG E D +R N + G G IA+ L GA VI + G P
Sbjct: 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN-- 58
Query: 245 ADPPNVMTIHVERAEDMLQEVLKAL----PVDIAVMVSAVSDWRFPKIAGTKIKRKDIGD 300
D N + +H LQ+ +K++ VD +M +A SDW KI + G+
Sbjct: 59 -DINNQLELHPFEGIIDLQDKMKSIITHEKVDAVIMAAAGSDWVVDKICDQE------GN 111
Query: 301 TMRIDLMENPDILKIIGHHQCRP------------SIVVGFAAETQCIE----QNAREKL 344
+ ++ + DI II H Q P +++VGF E+ E + A+ ++
Sbjct: 112 VLDMNGKISSDIAPII-HFQKAPKVLKQIKQWDPETVLVGFKLESDVNEEELFERAKNRM 170
Query: 345 LNKGADFIVSN 355
A +++N
Sbjct: 171 EEAKASVMIAN 181
>gnl|CDD|181370 PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed.
Length = 196
Score = 47.2 bits (113), Expect = 7e-06
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 1 MDLSGKKIALIMCGSVAVY-KSLDLIRRLRERGAVVIPVMTKSAQKFITPL--------I 51
M L GK+I + GS Y + + I +L + GA V P+++ + Q T
Sbjct: 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKK 60
Query: 52 VGAISNRRVYTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAIL 111
+ I+ +V ++ E+ + D +V+AP + N +A +A+ +
Sbjct: 61 IEEITGNKVINTIV------EAEPLGPKKLLDCMVIAPCTGNTMAKLANAIT-------- 106
Query: 112 LAKGDQPVLIAPAMNFMMWAKPATQRN 138
D PVL+A AK AT RN
Sbjct: 107 ----DSPVLMA--------AK-ATLRN 120
>gnl|CDD|131747 TIGR02700, flavo_MJ0208, archaeoflavoprotein, MJ0208 family. This
model describes one of two paralogous families of
archaealflavoprotein. The other, described by TIGR02699
and typified by the partially characterized AF1518 of
Archaeoglobus fulgidus, is a homodimeric FMN-containing
flavoprotein that accepts electrons from ferredoxin and
can transfer them to various oxidoreductases. The
function of this protein family is unknown.
Length = 234
Score = 37.9 bits (88), Expect = 0.005
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 83 DLLVVAPASANFIAHVAHGMVYDLAS-AILLA-KGDQPVLIAP 123
DLL+V+PA+AN +A +AHG+ L + A+ A KGD PV + P
Sbjct: 87 DLLIVSPATANTVAKIAHGIADSLVTNAVAQAGKGDVPVWVVP 129
>gnl|CDD|131899 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit.
Members of this family represent the B subunit of
dipicolinic acid synthetase, an enzyme that synthesizes
a small molecule that appears to confer heat stability
to bacterial endospores such as those of Bacillus
subtilis. The A and B subunits are together in what was
originally designated the spoVF locus for stage V of
endospore formation.
Length = 187
Score = 35.9 bits (83), Expect = 0.021
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 6 KKIALIMCGSVAVYKS-LDLIRRLRERGAVVIPVMTKSAQKFITPLIVGA--------IS 56
K+I + GS ++ + + +L + GA V P+++++ Q T GA I+
Sbjct: 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDTRFGKGADWIKKIEEIT 60
Query: 57 NRRVYTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLA--- 113
R ++ E+ D +V+AP + N ++ +A+ M S +L+A
Sbjct: 61 GRPAINTIV------EAEPFGPKVPLDCMVIAPLTGNSMSKLANAMT---DSPVLMAAKA 111
Query: 114 --KGDQPVLIAPAMN 126
+ ++PV++A + N
Sbjct: 112 TLRNNKPVVLAISTN 126
>gnl|CDD|131746 TIGR02699, archaeo_AfpA, archaeoflavoprotein AfpA. The
prototypical member of this archaeal protein family is
AF1518 from Archaeoglobus fulgidus. This homodimer with
two non-covalently bound FMN cofactors can receive
electrons from ferredoxin, but not from a number of
other electron donors such as NADH or rubredoxin. It can
then donate electrons to various reductases.
Length = 174
Score = 34.0 bits (78), Expect = 0.065
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 83 DLLVVAPASANFIAHVAHGMVYDLA--SAILLAKGDQPVLIAP 123
D L++APA+AN +A +A+G+ L + I AK PV I P
Sbjct: 80 DFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMP 122
>gnl|CDD|168990 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional.
Length = 255
Score = 33.2 bits (76), Expect = 0.12
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVIL 237
L G+RALVT SS G+A+A+ LA GAEVIL
Sbjct: 8 LTGRRALVTG----------------SSQGIGYALAEGLAQAGAEVIL 39
>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional.
Length = 252
Score = 31.5 bits (72), Expect = 0.39
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 16/50 (32%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS 239
L GK ALVT A+R G+ AIAK LA GA VI+ S
Sbjct: 6 LTGKIALVTG-------------ASRGIGE---AIAKLLAQQGAHVIVSS 39
>gnl|CDD|180973 PRK07424, PRK07424, bifunctional sterol desaturase/short chain
dehydrogenase; Validated.
Length = 406
Score = 31.2 bits (71), Expect = 0.46
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 25/96 (26%)
Query: 188 LLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVI-LISGPVSIA- 245
L LKGK VT +SG G A+ K L GA+V+ L S I
Sbjct: 174 LSLKGKTVAVTG----------------ASGTLGQALLKELHQQGAKVVALTSNSDKITL 217
Query: 246 ----DPPNVMTIHVE-RAEDMLQEVLKALPVDIAVM 276
+ V T+H + E L E+L+ VDI ++
Sbjct: 218 EINGEDLPVKTLHWQVGQEAALAELLEK--VDILII 251
>gnl|CDD|181332 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 450
Score = 31.0 bits (71), Expect = 0.62
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 36/90 (40%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249
L GK ALVT A R G AIA+ LA GA V+ +
Sbjct: 208 LAGKVALVTG-------------AARGIGA---AIAEVLARDGAHVVCLD---------- 241
Query: 250 VMTIHVERAEDMLQEVLK-----ALPVDIA 274
V A + L V AL +DI
Sbjct: 242 -----VPAAGEALAAVANRVGGTALALDIT 266
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 30.4 bits (68), Expect = 0.77
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274
S GQQ IA+ LA EVIL+ P S DP + M R E+++QE+ + + I
Sbjct: 149 SGGQQQRLCIARVLA-IEPEVILMDEPCSALDPVSTM-----RIEELMQELKQNYTIAIV 202
Query: 275 V----MVSAVSDW 283
+ SDW
Sbjct: 203 THNMQQAARASDW 215
>gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated.
Length = 681
Score = 30.2 bits (69), Expect = 0.87
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 22/64 (34%)
Query: 180 WLL--YK----SKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGA 233
W L K K L GK ALVT +G G A AK LA GA
Sbjct: 404 WSLEQAKLQRMPKPKPLAGKVALVTGA----------------AGGIGKATAKRLAAEGA 447
Query: 234 EVIL 237
V+L
Sbjct: 448 CVVL 451
>gnl|CDD|181348 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.
Length = 278
Score = 30.3 bits (69), Expect = 0.92
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 35/103 (33%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS---------- 239
LKGK A++T G G G A+AK LA GA+V ++
Sbjct: 8 LKGKVAVITGG----------------GGVLGGAMAKELARAGAKVAILDRNQEKAEAVV 51
Query: 240 ------GPVSIADPPNVMTIHVERAEDMLQEVLKAL-PVDIAV 275
G ++A +V+ E E Q++L+ P DI +
Sbjct: 52 AEIKAAGGEALAVKADVL--DKESLEQARQQILEDFGPCDILI 92
>gnl|CDD|184627 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 434
Score = 30.1 bits (68), Expect = 0.99
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 325 IVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPDTG-FVGKEWN-KVSIVFPDKIEEY 382
+++G A C+ + REKLL +GADF++ +P V + N + +F DK++E
Sbjct: 72 LIIGVAG---CVAEKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKVALFEDKLDEI 128
>gnl|CDD|180183 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 246
Score = 30.1 bits (69), Expect = 1.2
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 16/50 (32%)
Query: 189 LLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILI 238
L+GK ALVT S G AIA LA GA+V++
Sbjct: 2 SLQGKTALVTGA----------------SRGIGRAIALRLAADGAKVVIY 35
>gnl|CDD|180291 PRK05854, PRK05854, short chain dehydrogenase; Provisional.
Length = 313
Score = 29.6 bits (67), Expect = 1.3
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVIL 237
L GKRA+VT S G G +A+ LA GAEVIL
Sbjct: 12 LSGKRAVVTGA---------------SDGL-GLGLARRLAAAGAEVIL 43
>gnl|CDD|183774 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 249
Score = 29.8 bits (68), Expect = 1.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 16/48 (33%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVIL 237
L G+ ALVT + G AIA LA GA+V++
Sbjct: 4 LMGRVALVTGA----------------ARGLGRAIALRLARAGADVVV 35
>gnl|CDD|168279 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 29.7 bits (67), Expect = 1.4
Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 43/95 (45%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249
L GKR L+T SSG G A A+ A GA V+
Sbjct: 38 LTGKRILLTGA---------------SSGI-GEAAAEQFARRGATVVA------------ 69
Query: 250 VMTIHVERAEDMLQEVL----------KALPVDIA 274
V R ED+L V A+P D++
Sbjct: 70 -----VARREDLLDAVADRITRAGGDAMAVPCDLS 99
>gnl|CDD|163088 TIGR02964, xanthine_xdhC, xanthine dehydrogenase accessory protein
XdhC. Members of this protein family are the accessory
protein XdhC for insertion of the molybdenum cofactor
into the xanthine dehydrogenase large chain, XdhB, in
bacteria. This protein is not part of the mature
xanthine dehydrogenase. Xanthine dehydrogenase is an
enzyme for purine catabolism, from other purines to
xanthine to urate to further breakdown products.
Length = 246
Score = 29.6 bits (67), Expect = 1.5
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 218 GQQGHAIAKSLAYFGAEVILISGPVSI---ADPPNVMTIHVERAEDMLQEVLKALPVDIA 274
G G A+ ++LA V + + P V T+ D + + P
Sbjct: 109 GHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVT----DEPEAEVAEAPPGSY 164
Query: 275 VMV 277
+V
Sbjct: 165 FLV 167
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 29.6 bits (67), Expect = 1.6
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 213 ANRSSG--QQGHAIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALP 270
A SG QQ IA++LA EV+L+ P S DP I + E+++QE+ K
Sbjct: 142 ALGLSGGQQQRLCIARALA-VEPEVLLLDEPTSALDP-----IATGKIEELIQELKKKYT 195
Query: 271 VDI 273
+ I
Sbjct: 196 IVI 198
>gnl|CDD|130891 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase. This model
describes 2-deoxy-D-gluconate 3-dehydrogenase (also
called 2-keto-3-deoxygluconate oxidoreductase), a member
of the family of short-chain-alcohol dehydrogenases
(pfam00106). This protein has been characterized in
Erwinia chrysanthemi as an enzyme of pectin degradation.
Length = 248
Score = 29.3 bits (66), Expect = 1.7
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 20/59 (33%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPP 248
L+GK ALVT AN GQ IA LA GA+++ ++P
Sbjct: 3 LEGKVALVTG-------------ANTGLGQ---GIAVGLAEAGADIV----GAGRSEPS 41
>gnl|CDD|180126 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 248
Score = 29.4 bits (67), Expect = 1.8
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 29/94 (30%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249
L+GK ALVT R I G AIA+ LA GA V+
Sbjct: 3 LEGKVALVTGA--------SRGI--------GRAIAERLAAQGANVV------------- 33
Query: 250 VMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDW 283
+ E + L + AL + VSD
Sbjct: 34 INYASSEAGAEALVAEIGALGGKALAVQGDVSDA 67
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 29.0 bits (65), Expect = 2.1
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274
S GQQ IA+ LA EVIL+ P S DP I + ED+++E+ + V +
Sbjct: 202 SGGQQQRLCIARCLA-VDPEVILMDEPASALDP-----IATSKIEDLIEELAEEYTVVVV 255
Query: 275 V--MVSA--VSDWRFPKIAGTKIKRKDIGDTMRIDLMENPD 311
M A +SD + G ++ D DT +I ENP+
Sbjct: 256 THNMQQAARISDQTAVFLTGGELVEYD--DTDKI--FENPE 292
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 29.0 bits (65), Expect = 2.1
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274
S GQQ IA++LA EVIL+ P S DP I + ED+++++ K V I
Sbjct: 151 SGGQQQRLCIARTLA-VNPEVILMDEPCSALDP-----IATAKIEDLIEDLKKEYTVIIV 204
Query: 275 V----MVSAVSDW 283
+ VSD+
Sbjct: 205 THNMQQAARVSDY 217
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 28.9 bits (65), Expect = 2.4
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLK 267
S GQQ IA++LA EV+L+ P S DP + + I E+++QE+ K
Sbjct: 148 SGGQQQRLCIARALA-VEPEVLLMDEPTSALDPISTLKI-----EELIQELKK 194
>gnl|CDD|151868 pfam11429, Colicin_D, Colicin D. Colicin D is a tRNase which kills
sensitive E.coli cells via a specific tRNA cleavage. It
targets the four isoaccepting tRNAs for Arg and cleaves
the phosphodiester bond between positions 38 and 39 at
the 3' junction of the anticodon stem and the loop.
Length = 92
Score = 29.0 bits (65), Expect = 2.4
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 359 PDTGFVGKEWNKVSIV-FPDKIEEY 382
D G G WN ++ F D I+E+
Sbjct: 10 GDFGIKGTNWNNETLTEFEDAIQEH 34
>gnl|CDD|180398 PRK06100, PRK06100, DNA polymerase III subunit psi; Provisional.
Length = 132
Score = 29.0 bits (65), Expect = 2.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 69 EGYESNHIQLANECDLLVVAP 89
GY+ L ++C LL+VAP
Sbjct: 26 AGYQPPTQDLDSDCKLLLVAP 46
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 28.7 bits (64), Expect = 2.7
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 181 LLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSG--QQGHAIAKSLAYFGAEVILI 238
L+ KEL + + AL + E D + A + SG QQ IA++LA F EV+L
Sbjct: 112 LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA-FQPEVLLA 170
Query: 239 SGPVSIADPPNVMTIH---VERAEDMLQEVLKALPVDIAVMVSAVSDW 283
P + DP N I +E +DM ++ P A +SD+
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAA----RISDY 214
>gnl|CDD|129515 TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate and phenylacrylic
acid decarboxylases. In E.coli, the protein UbiX
(3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been
shown to be involved in the third step of ubiquinone
biosynthesis. It catalyzes the reaction
[3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol +
CO2]. The knockout of the homologous protein in yeast
confers sensitivity to phenylacrylic acid. Members are
not restricted to ubiquinone-synthesizing species. This
family represents a distinct clade within the
flavoprotein family of Pfam model pfam02441.
Length = 181
Score = 28.6 bits (64), Expect = 2.9
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 36/118 (30%)
Query: 7 KIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHLLS 66
+I + M G+ V + L+ L+E G V V++ A++ I
Sbjct: 1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETI------------------K 42
Query: 67 YKEGYESNHI-QLANEC-----------------DLLVVAPASANFIAHVAHGMVYDL 106
Y+ + + +LA + D +VV P S ++ +A+G +L
Sbjct: 43 YETDIDPGEVEELATKYYDADDFAAPIASGSFPFDGMVVVPCSMKTLSAIANGYADNL 100
>gnl|CDD|184699 PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis
protein NifE; Provisional.
Length = 475
Score = 28.4 bits (64), Expect = 3.6
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 2 DLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQK 45
L GK++ L G KS +++ L+E G V+ K +
Sbjct: 321 RLEGKRVLLYTGG----VKSWSVVKALQELGMEVVGTSVKKSTD 360
>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase;
Reviewed.
Length = 251
Score = 28.3 bits (64), Expect = 3.9
Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 41/103 (39%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249
L+G+ ALVT + G G AIA LA GAEVI
Sbjct: 4 LEGRVALVTGA---------------ARGI-GRAIAVRLAADGAEVI------------- 34
Query: 250 VMTIHVERAEDMLQEV------LKALPVD------IAVMVSAV 280
V+ I + A + V +A VD + V+A
Sbjct: 35 VVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAG 77
>gnl|CDD|181740 PRK09267, PRK09267, flavodoxin FldA; Validated.
Length = 169
Score = 28.3 bits (64), Expect = 4.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 1 MDLSGKKIALIMCGSVAVYKS--LDLIRRLRE----RGAVVI 36
+D SGKK+AL G Y D + L + RGA ++
Sbjct: 76 IDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIV 117
>gnl|CDD|183776 PRK12827, PRK12827, short chain dehydrogenase; Provisional.
Length = 249
Score = 27.8 bits (62), Expect = 4.8
Identities = 24/95 (25%), Positives = 30/95 (31%), Gaps = 29/95 (30%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249
L +R L+T G SG G AIA LA GA+VI
Sbjct: 4 LDSRRVLITGG----------------SGGLGRAIAVRLAADGADVI------------- 34
Query: 250 VMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWR 284
V+ IH R V + + D R
Sbjct: 35 VLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVR 69
>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional.
Length = 257
Score = 27.8 bits (62), Expect = 4.9
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 42/123 (34%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249
L G+ AL+T S G G AIA+ GA+V++++
Sbjct: 7 LDGQTALITGA---------------SKGI-GLAIAREFLGLGADVLIVAR--DADA--- 45
Query: 250 VMTIHVERAEDMLQEVLKALPVD-IAVMVS------AVSDW---RFPKI------AGTKI 293
+ +A D L E V +A VS A+ DW + + AG I
Sbjct: 46 -----LAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNI 100
Query: 294 KRK 296
++
Sbjct: 101 RKA 103
>gnl|CDD|161989 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Ornithine
carbamoyltransferases are in the same superfamily and
form an outgroup.
Length = 301
Score = 27.7 bits (62), Expect = 5.6
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 222 HAIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDM-------LQEVLKALPVDIA 274
H++A++L FG EV LIS P + P + + +A+ + L+EV+ V
Sbjct: 166 HSLAEALTRFGVEVYLIS-PEELRMPKEI--LEELKAKGIKVRETESLEEVIDEADV--- 219
Query: 275 VMVSAVSDWRFP 286
+ V+ + RFP
Sbjct: 220 LYVTRIQKERFP 231
>gnl|CDD|178331 PLN02730, PLN02730, enoyl-[acyl-carrier-protein] reductase.
Length = 303
Score = 27.4 bits (61), Expect = 6.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQ-GHAIAKSLAYFGAEVIL 237
L+GKRA +IA + G AIAK+LA GAE+++
Sbjct: 7 LRGKRA---------------FIAGVADDNGYGWAIAKALAAAGAEILV 40
>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional.
Length = 250
Score = 27.6 bits (62), Expect = 6.3
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 16/52 (30%)
Query: 189 LLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG 240
L GKRALVT A R G A A++LA GA V G
Sbjct: 4 NLAGKRALVTG-------------AARGLGA---AFAEALAEAGATVAFNDG 39
>gnl|CDD|161658 TIGR01283, nifE, nitrogenase molybdenum-iron cofactor biosynthesis
protein NifE. This protein is part of the NifEN complex
involved in biosynthesis of the molybdenum-iron cofactor
used by the homologous NifDK complex of nitrogenase. In
a few species, the protein is found as a NifEN fusion
protein.
Length = 456
Score = 27.3 bits (61), Expect = 6.7
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 2 DLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQK 45
L GKK A+ G KS L+ L++ G V+ T+ +
Sbjct: 323 RLKGKKAAIYTGG----VKSWSLVSALQDLGMEVVATGTQKGTE 362
>gnl|CDD|177605 PHA03368, PHA03368, DNA packaging terminase subunit 1; Provisional.
Length = 738
Score = 27.3 bits (61), Expect = 7.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 113 AKGDQPVLIAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGV 165
A D+PV A + + +P+T N IL D ++ P A ++G G+
Sbjct: 475 AARDRPVFTKTAGDRFLLYRPSTVANQGILSPDLYVYVDPAFTANTRASGTGI 527
>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional.
Length = 259
Score = 27.2 bits (61), Expect = 7.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 16/50 (32%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS 239
L GK ALVT G +R G Q IA++L GA V+L +
Sbjct: 10 LSGKTALVTGG-------------SRGLGLQ---IAEALGEAGARVVLSA 43
>gnl|CDD|184848 PRK14845, PRK14845, translation initiation factor IF-2;
Provisional.
Length = 1049
Score = 27.2 bits (60), Expect = 8.4
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 289 AGTKIKRKDIGDTMRIDLMENPDILKIIGHHQCRP--SIVVGFAAETQCIEQNAREKLLN 346
AG IK+ ++GD + D++E + + Q P +++GF + + A+E+
Sbjct: 832 AGIPIKKAEVGDITKKDVIE------ALSYKQENPLYGVILGFNVK---VLPEAQEEAEK 882
Query: 347 KGADFIVSNCI---LPD-TGFVGKEWNKV------SIVFPDKIEEYPE 384
G V N I + D T +V +E K ++ P I P+
Sbjct: 883 YGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPD 930
>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional.
Length = 260
Score = 27.2 bits (61), Expect = 8.7
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 16/47 (34%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVI 236
L GKRALVT G + G G A L GA V+
Sbjct: 7 LAGKRALVTGG---------------TKG-IGAATVARLLEAGARVV 37
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 27.1 bits (60), Expect = 8.8
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDI 273
S GQQ IA+++A +VIL+ P S DP I + E++++E+ K + I
Sbjct: 147 SGGQQQRLCIARTIA-MEPDVILMDEPTSALDP-----IATHKIEELMEELKKNYTIVI 199
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 26.8 bits (59), Expect = 9.2
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274
S GQQ IA+++A +VIL+ P S DP + + I ED++ E+ K + I
Sbjct: 149 SGGQQQRLCIARTIA-VKPDVILMDEPTSALDPISTLKI-----EDLMVELKKEYTIVIV 202
Query: 275 V----MVSAVSDW 283
S VSD+
Sbjct: 203 THNMQQASRVSDY 215
>gnl|CDD|183777 PRK12828, PRK12828, short chain dehydrogenase; Provisional.
Length = 239
Score = 27.1 bits (60), Expect = 9.8
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 16/49 (32%)
Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILI 238
L+GK +T G G G A A LA GA V LI
Sbjct: 5 LQGKVVAITGG----------------FGGLGRATAAWLAARGARVALI 37
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,714,615
Number of extensions: 437829
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 68
Length of query: 405
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 309
Effective length of database: 3,920,105
Effective search space: 1211312445
Effective search space used: 1211312445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)