RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Candidatus Liberibacter asiaticus str. psy62] (405 letters) >gnl|CDD|172484 PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional. Length = 475 Score = 471 bits (1214), Expect = e-133 Identities = 204/404 (50%), Positives = 274/404 (67%), Gaps = 7/404 (1%) Query: 2 DLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVY 61 L+ K++ LI+ G +A YK+LDLIRRL+ERGA V V+TK+AQ+F+TPL A+S +RVY Sbjct: 67 SLASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSGQRVY 126 Query: 62 THLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVLI 121 T L + +++ HI+LA +CDL+VVAPA+A+ +A +A+G+ DLASAILLA ++P+L+ Sbjct: 127 TDLFDPESEFDAGHIRLARDCDLIVVAPATADLMAKMANGLADDLASAILLAA-NRPILL 185 Query: 122 APAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWL 181 APAMN +MW PAT+RNV L++DG + IGP +G MAE GVGRM+EP +I L Sbjct: 186 APAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEAL 245 Query: 182 LYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGP 241 L + L G+R L+T+GPT+EP+DP+RYIANRSSG+QG AIA + A GAEV LISGP Sbjct: 246 LRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 Query: 242 VSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGDT 301 V +ADP V IHVE A ML V ALP DIA+ +AV+DWR G K+K+ G Sbjct: 306 VDLADPQGVKVIHVESARQMLAAVEAALPADIAIFAAAVADWRVATEGGQKLKKGAAG-P 364 Query: 302 MRIDLMENPDILKIIGHH-QCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPD 360 + L+ENPDIL I + RP +V+GFAAET+ + NAR KL KG D+IV+N + P Sbjct: 365 PPLQLVENPDILATISKLAENRPPLVIGFAAETEHLIDNARAKLARKGCDWIVANDVSPA 424 Query: 361 TGFVGKEWNKVSIVFPD----KIEEYPELPKAEVADRLCHLIVE 400 TG +G + N V ++ D K+E +P + K EVA L I Sbjct: 425 TGVMGGDRNTVHLLSRDGDAEKVESWPVMTKDEVATALVARIAS 468 >gnl|CDD|180143 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated. Length = 399 Score = 459 bits (1184), Expect = e-130 Identities = 181/404 (44%), Positives = 251/404 (62%), Gaps = 10/404 (2%) Query: 1 MDLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRV 60 L+GK+I L + G +A YK+L+L+RRLR+ GA V VMT++A+KF+TPL A+S V Sbjct: 2 RMLAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSGNPV 61 Query: 61 YTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVL 120 T L HI+LA DL+++APA+A+ IA +AHG+ DL + LLA PVL Sbjct: 62 STDLWDPAAEAAMGHIELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLAT-TAPVL 120 Query: 121 IAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITW 180 +APAMN MW PATQRN+ L+ G IGP SG +A G GRM+EP +I+ Sbjct: 121 VAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLA-CGDVGPGRMAEPEEIVAAAER 179 Query: 181 LLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG 240 L L GKR L+T+GPT EP+DP+RYI NRSSG+ G+A+A++ A GA+V L+SG Sbjct: 180 ALSPKD---LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSG 236 Query: 241 PVSIADPPNVMTIHVERAEDMLQEVLKALP-VDIAVMVSAVSDWRFPKIAGTKIKRKDIG 299 PV++ P V I VE A++ML VL ALP DI +M +AV+D+R +A KIK+ + Sbjct: 237 PVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGE-- 294 Query: 300 DTMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILP 359 + ++L+ NPDIL + + + VVGFAAET + + AR KL KG D IV+N + Sbjct: 295 GELTLELVPNPDILAEVAALKDKRPFVVGFAAETGDVLEYARAKLKRKGLDLIVANDVSA 354 Query: 360 DTGFVGKEWNKVSIVFPDKIEEY-PELPKAEVADRLCHLIVEHL 402 GF G + N+V++++ D E P + K E+A RL I E L Sbjct: 355 GGGF-GSDDNEVTLIWSDGGEVKLPLMSKLELARRLLDEIAERL 397 >gnl|CDD|161911 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. Length = 390 Score = 342 bits (878), Expect = 1e-94 Identities = 161/395 (40%), Positives = 245/395 (62%), Gaps = 13/395 (3%) Query: 3 LSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYT 62 L KKI L + G +A YK+++L+R L +GA V +MT++A+KFITPL + A+S +V T Sbjct: 1 LENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSGHKVVT 60 Query: 63 HLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVLIA 122 L E + + HI LA DL+++APA+AN I+ +AHG+ DL S LA P+++A Sbjct: 61 ELWGPIE-HNALHIDLAKWADLILIAPATANTISKIAHGIADDLVSTTALA-ASAPIILA 118 Query: 123 PAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLL 182 PAMN M+ PA Q N++ L+ DG FI P+SG +A + G GR++EP I++ Sbjct: 119 PAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGD-EGKGRLAEPETIVKAAEREF 177 Query: 183 YKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPV 242 S + L+GKR L+T+GPT EP+DP+R+I+N SSG+ G A+A++ GA+V LI+GPV Sbjct: 178 --SPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 Query: 243 SIADPPNVMTIHVERAEDMLQEVLKAL--PVDIAVMVSAVSDWRFPKIAGTKIKRKDIGD 300 S+ PP V +I V AE+ML+ L L DI + +AV+D++ + KIK++ G+ Sbjct: 236 SLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQ--GE 293 Query: 301 TMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQ-CIEQNAREKLLNKGADFIVSNCILP 359 + + L++NPDI+ + + ++VGF AET + + A+EKL K D IV+N + Sbjct: 294 ELSLKLVKNPDIIAEVRKIKKHQ-VIVGFKAETNDDLIKYAKEKLKKKNLDMIVANDVS- 351 Query: 360 DTGFVGKEWNKVSIVFPDKIEEYPELPKAEVADRL 394 GF G + N+V I +E P + K EVA+R+ Sbjct: 352 QRGF-GSDENEVYIFSKHGHKELPLMSKLEVAERI 385 >gnl|CDD|180924 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated. Length = 182 Score = 198 bits (505), Expect = 2e-51 Identities = 75/183 (40%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 5 GKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHL 64 K I L + GS+A YK+ DL +L +RG V +MTK+A KFITPL + +S V+ + Sbjct: 1 MKNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSKNPVHLDV 60 Query: 65 LSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQ-PVLIAP 123 + + NHI+LA DL +VAPA+AN IA +AHG+ DL +++ LA P LIAP Sbjct: 61 MDEHDPKLMNHIELAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAP 120 Query: 124 AMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLLY 183 AMN M+ PATQRN++ L++DG I P+ G +A G G +++ I+ I L Sbjct: 121 AMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLA-CGDEGYGALADIETILETIENTLK 179 Query: 184 KSK 186 + Sbjct: 180 EKT 182 >gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity. Length = 177 Score = 131 bits (332), Expect = 3e-31 Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 2/174 (1%) Query: 6 KKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHLL 65 KKI L + GS+A YK+ DL +L + G V +MT++A +FITPL + +S V+ ++ Sbjct: 1 KKILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDVM 60 Query: 66 SYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQ-PVLIAPA 124 + NHI+LA + DL +VAPASAN IAH+AHG ++ +++ LA + P LIAPA Sbjct: 61 DEHDPKVINHIELAKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPA 120 Query: 125 MNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQI 178 MN M+ P TQRN++IL+K G I P+ +A YG G +++ DI++ I Sbjct: 121 MNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA-CGDYGRGALADLDDILQTI 173 >gnl|CDD|166137 PLN02496, PLN02496, probable phosphopantothenoylcysteine decarboxylase. Length = 209 Score = 73.5 bits (180), Expect = 9e-14 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 7 KIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHLLS 66 +I L GSVA K +L E A V V+TK++ FI + + +YT Sbjct: 21 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVVTKASLHFIDRASLP--KDVTLYTDEDE 77 Query: 67 Y----KEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLA-KGDQPVLI 121 + K G HI+L D++V+AP SAN + +A G+ +L + I+ A +P+ + Sbjct: 78 WSSWNKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFV 137 Query: 122 APAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEP 171 APAMN MW P T+R++ + + G I P + +A YG G M+EP Sbjct: 138 APAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLA-CGDYGNGAMAEP 186 >gnl|CDD|180673 PRK06732, PRK06732, phosphopantothenate--cysteine ligase; Validated. Length = 229 Score = 68.5 bits (168), Expect = 3e-12 Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 42/236 (17%) Query: 196 LVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSI--ADPPNVMTI 253 L+TSG T EP+D +R I N S+GQ G IA++ G EV L++ ++ PN+ I Sbjct: 4 LITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPEPHPNLSII 63 Query: 254 HVERAEDMLQEVLKALP-VDIAVMVSAVSDWR------FPKIAGT--------------K 292 +E +D+L+ + + D+ + AVSD+ +++ + K Sbjct: 64 EIENVDDLLETLEPLVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFLTKQNTEAK 123 Query: 293 IKRKDIGDTMRIDLMENPDILKIIGH-HQCRPSIV-VGF-----AAETQCIEQNAREKLL 345 I D + L + P K+I + + P+I VGF ++ + I + AR L+ Sbjct: 124 ISSAS--DYQVLFLKKTP---KVISYVKKWNPNITLVGFKLLVNVSKEELI-KVARASLI 177 Query: 346 NKGADFIVSNCILPDTGFVGKEWNKVSIVFPDKIEEYPELPKAEVADRLCHLIVEH 401 AD+I++N D + + +K +V K E Y K E+AD L I ++ Sbjct: 178 KNQADYILAN----DLTDISADQHKALLV--SKNEVYTAQTKEEIADLLLERIEKY 227 >gnl|CDD|131169 TIGR02114, coaB_strep, phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. Length = 227 Score = 61.0 bits (148), Expect = 5e-10 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 28/186 (15%) Query: 196 LVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPP--NVMTI 253 LVTSG T EP+D +R I N S+G G I ++ G EV L++ ++ P N+ Sbjct: 3 LVTSGGTSEPIDSVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALKPEPHPNLSIR 62 Query: 254 HVERAEDMLQEVLKALP-VDIAVMVSAVSDW------------------RFPKIAGTKIK 294 +E +D+L + + + DI + AVSD+ F + K Sbjct: 63 EIETTKDLLITLKELVQEHDILIHSMAVSDYTPVYMTDLEQVQASDNLNEFLSKQNHEAK 122 Query: 295 RKDIGDTMRIDLMENPDILKIIGHHQCRPSIV-VGFAAETQCIEQN----AREKLLNKGA 349 + + L + P ++ ++ + P I VGF ++ AR L+ A Sbjct: 123 ISSTSEYQVLFLKKTPKVISLV--KEWNPQIHLVGFKLLVNVTQEELVKVARASLIKNQA 180 Query: 350 DFIVSN 355 DFI++N Sbjct: 181 DFILAN 186 >gnl|CDD|181997 PRK09620, PRK09620, hypothetical protein; Provisional. Length = 229 Score = 54.9 bits (132), Expect = 4e-08 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 35/191 (18%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG-----PVSI 244 +KGK+ L+TSG E D +R N + G G IA+ L GA VI + G P Sbjct: 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN-- 58 Query: 245 ADPPNVMTIHVERAEDMLQEVLKAL----PVDIAVMVSAVSDWRFPKIAGTKIKRKDIGD 300 D N + +H LQ+ +K++ VD +M +A SDW KI + G+ Sbjct: 59 -DINNQLELHPFEGIIDLQDKMKSIITHEKVDAVIMAAAGSDWVVDKICDQE------GN 111 Query: 301 TMRIDLMENPDILKIIGHHQCRP------------SIVVGFAAETQCIE----QNAREKL 344 + ++ + DI II H Q P +++VGF E+ E + A+ ++ Sbjct: 112 VLDMNGKISSDIAPII-HFQKAPKVLKQIKQWDPETVLVGFKLESDVNEEELFERAKNRM 170 Query: 345 LNKGADFIVSN 355 A +++N Sbjct: 171 EEAKASVMIAN 181 >gnl|CDD|181370 PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed. Length = 196 Score = 47.2 bits (113), Expect = 7e-06 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 36/147 (24%) Query: 1 MDLSGKKIALIMCGSVAVY-KSLDLIRRLRERGAVVIPVMTKSAQKFITPL--------I 51 M L GK+I + GS Y + + I +L + GA V P+++ + Q T Sbjct: 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKK 60 Query: 52 VGAISNRRVYTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAIL 111 + I+ +V ++ E+ + D +V+AP + N +A +A+ + Sbjct: 61 IEEITGNKVINTIV------EAEPLGPKKLLDCMVIAPCTGNTMAKLANAIT-------- 106 Query: 112 LAKGDQPVLIAPAMNFMMWAKPATQRN 138 D PVL+A AK AT RN Sbjct: 107 ----DSPVLMA--------AK-ATLRN 120 >gnl|CDD|131747 TIGR02700, flavo_MJ0208, archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown. Length = 234 Score = 37.9 bits (88), Expect = 0.005 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%) Query: 83 DLLVVAPASANFIAHVAHGMVYDLAS-AILLA-KGDQPVLIAP 123 DLL+V+PA+AN +A +AHG+ L + A+ A KGD PV + P Sbjct: 87 DLLIVSPATANTVAKIAHGIADSLVTNAVAQAGKGDVPVWVVP 129 >gnl|CDD|131899 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation. Length = 187 Score = 35.9 bits (83), Expect = 0.021 Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 23/135 (17%) Query: 6 KKIALIMCGSVAVYKS-LDLIRRLRERGAVVIPVMTKSAQKFITPLIVGA--------IS 56 K+I + GS ++ + + +L + GA V P+++++ Q T GA I+ Sbjct: 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDTRFGKGADWIKKIEEIT 60 Query: 57 NRRVYTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLA--- 113 R ++ E+ D +V+AP + N ++ +A+ M S +L+A Sbjct: 61 GRPAINTIV------EAEPFGPKVPLDCMVIAPLTGNSMSKLANAMT---DSPVLMAAKA 111 Query: 114 --KGDQPVLIAPAMN 126 + ++PV++A + N Sbjct: 112 TLRNNKPVVLAISTN 126 >gnl|CDD|131746 TIGR02699, archaeo_AfpA, archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases. Length = 174 Score = 34.0 bits (78), Expect = 0.065 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Query: 83 DLLVVAPASANFIAHVAHGMVYDLA--SAILLAKGDQPVLIAP 123 D L++APA+AN +A +A+G+ L + I AK PV I P Sbjct: 80 DFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMP 122 >gnl|CDD|168990 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional. Length = 255 Score = 33.2 bits (76), Expect = 0.12 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 16/48 (33%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVIL 237 L G+RALVT SS G+A+A+ LA GAEVIL Sbjct: 8 LTGRRALVTG----------------SSQGIGYALAEGLAQAGAEVIL 39 >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional. Length = 252 Score = 31.5 bits (72), Expect = 0.39 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 16/50 (32%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS 239 L GK ALVT A+R G+ AIAK LA GA VI+ S Sbjct: 6 LTGKIALVTG-------------ASRGIGE---AIAKLLAQQGAHVIVSS 39 >gnl|CDD|180973 PRK07424, PRK07424, bifunctional sterol desaturase/short chain dehydrogenase; Validated. Length = 406 Score = 31.2 bits (71), Expect = 0.46 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 25/96 (26%) Query: 188 LLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVI-LISGPVSIA- 245 L LKGK VT +SG G A+ K L GA+V+ L S I Sbjct: 174 LSLKGKTVAVTG----------------ASGTLGQALLKELHQQGAKVVALTSNSDKITL 217 Query: 246 ----DPPNVMTIHVE-RAEDMLQEVLKALPVDIAVM 276 + V T+H + E L E+L+ VDI ++ Sbjct: 218 EINGEDLPVKTLHWQVGQEAALAELLEK--VDILII 251 >gnl|CDD|181332 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional. Length = 450 Score = 31.0 bits (71), Expect = 0.62 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 36/90 (40%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249 L GK ALVT A R G AIA+ LA GA V+ + Sbjct: 208 LAGKVALVTG-------------AARGIGA---AIAEVLARDGAHVVCLD---------- 241 Query: 250 VMTIHVERAEDMLQEVLK-----ALPVDIA 274 V A + L V AL +DI Sbjct: 242 -----VPAAGEALAAVANRVGGTALALDIT 266 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 30.4 bits (68), Expect = 0.77 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 11/73 (15%) Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274 S GQQ IA+ LA EVIL+ P S DP + M R E+++QE+ + + I Sbjct: 149 SGGQQQRLCIARVLA-IEPEVILMDEPCSALDPVSTM-----RIEELMQELKQNYTIAIV 202 Query: 275 V----MVSAVSDW 283 + SDW Sbjct: 203 THNMQQAARASDW 215 >gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated. Length = 681 Score = 30.2 bits (69), Expect = 0.87 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 22/64 (34%) Query: 180 WLL--YK----SKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGA 233 W L K K L GK ALVT +G G A AK LA GA Sbjct: 404 WSLEQAKLQRMPKPKPLAGKVALVTGA----------------AGGIGKATAKRLAAEGA 447 Query: 234 EVIL 237 V+L Sbjct: 448 CVVL 451 >gnl|CDD|181348 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional. Length = 278 Score = 30.3 bits (69), Expect = 0.92 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 35/103 (33%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS---------- 239 LKGK A++T G G G A+AK LA GA+V ++ Sbjct: 8 LKGKVAVITGG----------------GGVLGGAMAKELARAGAKVAILDRNQEKAEAVV 51 Query: 240 ------GPVSIADPPNVMTIHVERAEDMLQEVLKAL-PVDIAV 275 G ++A +V+ E E Q++L+ P DI + Sbjct: 52 AEIKAAGGEALAVKADVL--DKESLEQARQQILEDFGPCDILI 92 >gnl|CDD|184627 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 434 Score = 30.1 bits (68), Expect = 0.99 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 325 IVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPDTG-FVGKEWN-KVSIVFPDKIEEY 382 +++G A C+ + REKLL +GADF++ +P V + N + +F DK++E Sbjct: 72 LIIGVAG---CVAEKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKVALFEDKLDEI 128 >gnl|CDD|180183 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated. Length = 246 Score = 30.1 bits (69), Expect = 1.2 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 16/50 (32%) Query: 189 LLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILI 238 L+GK ALVT S G AIA LA GA+V++ Sbjct: 2 SLQGKTALVTGA----------------SRGIGRAIALRLAADGAKVVIY 35 >gnl|CDD|180291 PRK05854, PRK05854, short chain dehydrogenase; Provisional. Length = 313 Score = 29.6 bits (67), Expect = 1.3 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 16/48 (33%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVIL 237 L GKRA+VT S G G +A+ LA GAEVIL Sbjct: 12 LSGKRAVVTGA---------------SDGL-GLGLARRLAAAGAEVIL 43 >gnl|CDD|183774 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional. Length = 249 Score = 29.8 bits (68), Expect = 1.4 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 16/48 (33%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVIL 237 L G+ ALVT + G AIA LA GA+V++ Sbjct: 4 LMGRVALVTGA----------------ARGLGRAIALRLARAGADVVV 35 >gnl|CDD|168279 PRK05866, PRK05866, short chain dehydrogenase; Provisional. Length = 293 Score = 29.7 bits (67), Expect = 1.4 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 43/95 (45%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249 L GKR L+T SSG G A A+ A GA V+ Sbjct: 38 LTGKRILLTGA---------------SSGI-GEAAAEQFARRGATVVA------------ 69 Query: 250 VMTIHVERAEDMLQEVL----------KALPVDIA 274 V R ED+L V A+P D++ Sbjct: 70 -----VARREDLLDAVADRITRAGGDAMAVPCDLS 99 >gnl|CDD|163088 TIGR02964, xanthine_xdhC, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. Length = 246 Score = 29.6 bits (67), Expect = 1.5 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 7/63 (11%) Query: 218 GQQGHAIAKSLAYFGAEVILISGPVSI---ADPPNVMTIHVERAEDMLQEVLKALPVDIA 274 G G A+ ++LA V + + P V T+ D + + P Sbjct: 109 GHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVT----DEPEAEVAEAPPGSY 164 Query: 275 VMV 277 +V Sbjct: 165 FLV 167 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 29.6 bits (67), Expect = 1.6 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Query: 213 ANRSSG--QQGHAIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALP 270 A SG QQ IA++LA EV+L+ P S DP I + E+++QE+ K Sbjct: 142 ALGLSGGQQQRLCIARALA-VEPEVLLLDEPTSALDP-----IATGKIEELIQELKKKYT 195 Query: 271 VDI 273 + I Sbjct: 196 IVI 198 >gnl|CDD|130891 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. Length = 248 Score = 29.3 bits (66), Expect = 1.7 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 20/59 (33%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPP 248 L+GK ALVT AN GQ IA LA GA+++ ++P Sbjct: 3 LEGKVALVTG-------------ANTGLGQ---GIAVGLAEAGADIV----GAGRSEPS 41 >gnl|CDD|180126 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated. Length = 248 Score = 29.4 bits (67), Expect = 1.8 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 29/94 (30%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249 L+GK ALVT R I G AIA+ LA GA V+ Sbjct: 3 LEGKVALVTGA--------SRGI--------GRAIAERLAAQGANVV------------- 33 Query: 250 VMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDW 283 + E + L + AL + VSD Sbjct: 34 INYASSEAGAEALVAEIGALGGKALAVQGDVSDA 67 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 29.0 bits (65), Expect = 2.1 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 15/101 (14%) Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274 S GQQ IA+ LA EVIL+ P S DP I + ED+++E+ + V + Sbjct: 202 SGGQQQRLCIARCLA-VDPEVILMDEPASALDP-----IATSKIEDLIEELAEEYTVVVV 255 Query: 275 V--MVSA--VSDWRFPKIAGTKIKRKDIGDTMRIDLMENPD 311 M A +SD + G ++ D DT +I ENP+ Sbjct: 256 THNMQQAARISDQTAVFLTGGELVEYD--DTDKI--FENPE 292 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 29.0 bits (65), Expect = 2.1 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%) Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274 S GQQ IA++LA EVIL+ P S DP I + ED+++++ K V I Sbjct: 151 SGGQQQRLCIARTLA-VNPEVILMDEPCSALDP-----IATAKIEDLIEDLKKEYTVIIV 204 Query: 275 V----MVSAVSDW 283 + VSD+ Sbjct: 205 THNMQQAARVSDY 217 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 28.9 bits (65), Expect = 2.4 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLK 267 S GQQ IA++LA EV+L+ P S DP + + I E+++QE+ K Sbjct: 148 SGGQQQRLCIARALA-VEPEVLLMDEPTSALDPISTLKI-----EELIQELKK 194 >gnl|CDD|151868 pfam11429, Colicin_D, Colicin D. Colicin D is a tRNase which kills sensitive E.coli cells via a specific tRNA cleavage. It targets the four isoaccepting tRNAs for Arg and cleaves the phosphodiester bond between positions 38 and 39 at the 3' junction of the anticodon stem and the loop. Length = 92 Score = 29.0 bits (65), Expect = 2.4 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%) Query: 359 PDTGFVGKEWNKVSIV-FPDKIEEY 382 D G G WN ++ F D I+E+ Sbjct: 10 GDFGIKGTNWNNETLTEFEDAIQEH 34 >gnl|CDD|180398 PRK06100, PRK06100, DNA polymerase III subunit psi; Provisional. Length = 132 Score = 29.0 bits (65), Expect = 2.5 Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 69 EGYESNHIQLANECDLLVVAP 89 GY+ L ++C LL+VAP Sbjct: 26 AGYQPPTQDLDSDCKLLLVAP 46 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 28.7 bits (64), Expect = 2.7 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%) Query: 181 LLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSG--QQGHAIAKSLAYFGAEVILI 238 L+ KEL + + AL + E D + A + SG QQ IA++LA F EV+L Sbjct: 112 LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA-FQPEVLLA 170 Query: 239 SGPVSIADPPNVMTIH---VERAEDMLQEVLKALPVDIAVMVSAVSDW 283 P + DP N I +E +DM ++ P A +SD+ Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAA----RISDY 214 >gnl|CDD|129515 TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441. Length = 181 Score = 28.6 bits (64), Expect = 2.9 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 36/118 (30%) Query: 7 KIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHLLS 66 +I + M G+ V + L+ L+E G V V++ A++ I Sbjct: 1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETI------------------K 42 Query: 67 YKEGYESNHI-QLANEC-----------------DLLVVAPASANFIAHVAHGMVYDL 106 Y+ + + +LA + D +VV P S ++ +A+G +L Sbjct: 43 YETDIDPGEVEELATKYYDADDFAAPIASGSFPFDGMVVVPCSMKTLSAIANGYADNL 100 >gnl|CDD|184699 PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional. Length = 475 Score = 28.4 bits (64), Expect = 3.6 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 2 DLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQK 45 L GK++ L G KS +++ L+E G V+ K + Sbjct: 321 RLEGKRVLLYTGG----VKSWSVVKALQELGMEVVGTSVKKSTD 360 >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed. Length = 251 Score = 28.3 bits (64), Expect = 3.9 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 41/103 (39%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249 L+G+ ALVT + G G AIA LA GAEVI Sbjct: 4 LEGRVALVTGA---------------ARGI-GRAIAVRLAADGAEVI------------- 34 Query: 250 VMTIHVERAEDMLQEV------LKALPVD------IAVMVSAV 280 V+ I + A + V +A VD + V+A Sbjct: 35 VVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAG 77 >gnl|CDD|181740 PRK09267, PRK09267, flavodoxin FldA; Validated. Length = 169 Score = 28.3 bits (64), Expect = 4.2 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%) Query: 1 MDLSGKKIALIMCGSVAVYKS--LDLIRRLRE----RGAVVI 36 +D SGKK+AL G Y D + L + RGA ++ Sbjct: 76 IDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIV 117 >gnl|CDD|183776 PRK12827, PRK12827, short chain dehydrogenase; Provisional. Length = 249 Score = 27.8 bits (62), Expect = 4.8 Identities = 24/95 (25%), Positives = 30/95 (31%), Gaps = 29/95 (30%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249 L +R L+T G SG G AIA LA GA+VI Sbjct: 4 LDSRRVLITGG----------------SGGLGRAIAVRLAADGADVI------------- 34 Query: 250 VMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWR 284 V+ IH R V + + D R Sbjct: 35 VLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVR 69 >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional. Length = 257 Score = 27.8 bits (62), Expect = 4.9 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 42/123 (34%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249 L G+ AL+T S G G AIA+ GA+V++++ Sbjct: 7 LDGQTALITGA---------------SKGI-GLAIAREFLGLGADVLIVAR--DADA--- 45 Query: 250 VMTIHVERAEDMLQEVLKALPVD-IAVMVS------AVSDW---RFPKI------AGTKI 293 + +A D L E V +A VS A+ DW + + AG I Sbjct: 46 -----LAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNI 100 Query: 294 KRK 296 ++ Sbjct: 101 RKA 103 >gnl|CDD|161989 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. Length = 301 Score = 27.7 bits (62), Expect = 5.6 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 13/72 (18%) Query: 222 HAIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDM-------LQEVLKALPVDIA 274 H++A++L FG EV LIS P + P + + +A+ + L+EV+ V Sbjct: 166 HSLAEALTRFGVEVYLIS-PEELRMPKEI--LEELKAKGIKVRETESLEEVIDEADV--- 219 Query: 275 VMVSAVSDWRFP 286 + V+ + RFP Sbjct: 220 LYVTRIQKERFP 231 >gnl|CDD|178331 PLN02730, PLN02730, enoyl-[acyl-carrier-protein] reductase. Length = 303 Score = 27.4 bits (61), Expect = 6.0 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 16/49 (32%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQ-GHAIAKSLAYFGAEVIL 237 L+GKRA +IA + G AIAK+LA GAE+++ Sbjct: 7 LRGKRA---------------FIAGVADDNGYGWAIAKALAAAGAEILV 40 >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional. Length = 250 Score = 27.6 bits (62), Expect = 6.3 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 16/52 (30%) Query: 189 LLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG 240 L GKRALVT A R G A A++LA GA V G Sbjct: 4 NLAGKRALVTG-------------AARGLGA---AFAEALAEAGATVAFNDG 39 >gnl|CDD|161658 TIGR01283, nifE, nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein. Length = 456 Score = 27.3 bits (61), Expect = 6.7 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 2 DLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQK 45 L GKK A+ G KS L+ L++ G V+ T+ + Sbjct: 323 RLKGKKAAIYTGG----VKSWSLVSALQDLGMEVVATGTQKGTE 362 >gnl|CDD|177605 PHA03368, PHA03368, DNA packaging terminase subunit 1; Provisional. Length = 738 Score = 27.3 bits (61), Expect = 7.1 Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 113 AKGDQPVLIAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGV 165 A D+PV A + + +P+T N IL D ++ P A ++G G+ Sbjct: 475 AARDRPVFTKTAGDRFLLYRPSTVANQGILSPDLYVYVDPAFTANTRASGTGI 527 >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional. Length = 259 Score = 27.2 bits (61), Expect = 7.6 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 16/50 (32%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS 239 L GK ALVT G +R G Q IA++L GA V+L + Sbjct: 10 LSGKTALVTGG-------------SRGLGLQ---IAEALGEAGARVVLSA 43 >gnl|CDD|184848 PRK14845, PRK14845, translation initiation factor IF-2; Provisional. Length = 1049 Score = 27.2 bits (60), Expect = 8.4 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 21/108 (19%) Query: 289 AGTKIKRKDIGDTMRIDLMENPDILKIIGHHQCRP--SIVVGFAAETQCIEQNAREKLLN 346 AG IK+ ++GD + D++E + + Q P +++GF + + A+E+ Sbjct: 832 AGIPIKKAEVGDITKKDVIE------ALSYKQENPLYGVILGFNVK---VLPEAQEEAEK 882 Query: 347 KGADFIVSNCI---LPD-TGFVGKEWNKV------SIVFPDKIEEYPE 384 G V N I + D T +V +E K ++ P I P+ Sbjct: 883 YGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPD 930 >gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional. Length = 260 Score = 27.2 bits (61), Expect = 8.7 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 16/47 (34%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVI 236 L GKRALVT G + G G A L GA V+ Sbjct: 7 LAGKRALVTGG---------------TKG-IGAATVARLLEAGARVV 37 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 27.1 bits (60), Expect = 8.8 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDI 273 S GQQ IA+++A +VIL+ P S DP I + E++++E+ K + I Sbjct: 147 SGGQQQRLCIARTIA-MEPDVILMDEPTSALDP-----IATHKIEELMEELKKNYTIVI 199 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 26.8 bits (59), Expect = 9.2 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 11/73 (15%) Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIA 274 S GQQ IA+++A +VIL+ P S DP + + I ED++ E+ K + I Sbjct: 149 SGGQQQRLCIARTIA-VKPDVILMDEPTSALDPISTLKI-----EDLMVELKKEYTIVIV 202 Query: 275 V----MVSAVSDW 283 S VSD+ Sbjct: 203 THNMQQASRVSDY 215 >gnl|CDD|183777 PRK12828, PRK12828, short chain dehydrogenase; Provisional. Length = 239 Score = 27.1 bits (60), Expect = 9.8 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 16/49 (32%) Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILI 238 L+GK +T G G G A A LA GA V LI Sbjct: 5 LQGKVVAITGG----------------FGGLGRATAAWLAARGARVALI 37 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0735 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,714,615 Number of extensions: 437829 Number of successful extensions: 1154 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1116 Number of HSP's successfully gapped: 68 Length of query: 405 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 309 Effective length of database: 3,920,105 Effective search space: 1211312445 Effective search space used: 1211312445 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.1 bits)