HHsearch alignment for GI: 254780623 and conserved domain: COG0478
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms].
Probab=98.97 E-value=8.7e-09 Score=87.25 Aligned_cols=185 Identities=23% Similarity=0.241 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 86766677888865555021288872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517)
Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517)
T Consensus 94 ~iG~~IGvGKEsdVY~~~~~~---g~~~~vKfHR~G-rtsFrk----vk~~R~y~~~~~h-~sWl~~sR------l~A~- 157 (304)
T COG0478 94 AIGTKIGVGKESDVYVAIDPK---GRKVAVKFHRLG-RTSFRK----VKRNRDYLADKEH-GSWLYVSR------LAAE- 157 (304)
T ss_pred HHCCCCCCCCCCEEEEEECCC---CCEEEEEEEECC-CHHHHH----HHHHHHHHCCCCC-CCHHHHHH------HHHH-
T ss_conf 623312567543179998899---988899862057-235654----2200656513567-62224678------9899-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 86559999889872024467766430000102217833530024786324267733200225689999999999989744
Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRD 281 (517)
Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~ 281 (517)
T Consensus 158 -----rEf~~L~~L~-----~~G~~VP~P~~~--nRHaVvMe~ieG~eL~~~r~---~~en~~~il~~il~~~~~-~~~~ 221 (304)
T COG0478 158 -----REFEALQRLY-----PEGVKVPKPIAW--NRHAVVMEYIEGVELYRLRL---DVENPDEILDKILEEVRK-AYRR 221 (304)
T ss_pred -----HHHHHHHHHH-----HCCCCCCCCCCC--CCCEEEEEHCCCCEEECCCC---CCCCHHHHHHHHHHHHHH-HHHC
T ss_conf -----9999999840-----338989985344--45243020105614002667---631789999999999999-9972
Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 8661787862289802895357434031216989999999766999718727899999984126
Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYV 345 (517)
Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~ 345 (517)
T Consensus 222 GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~hp~a~e~-------l~RDv~nii~yFrrky~~ 278 (304)
T COG0478 222 GIVHGDLSEFNILVTEDGDIVVIDWPQAVPISHPDAEEL-------LERDVENIIKYFRRKYGY 278 (304)
T ss_pred CCCCCCCCHHEEEEECCCCEEEEECCCCCCCCCCCHHHH-------HHHHHHHHHHHHHHHCCC
T ss_conf 911147735418981699889986766645789788999-------996899999999986066