HHsearch alignment for GI: 254780623 and conserved domain: COG3001
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=95.91 E-value=0.04 Score=35.63 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9899999875404788999999867-666778888655550212888723687640310468877778899987532114
Q gi|254780623|r 100 PTNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK 178 (517)
Q Consensus 100 ~~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~ 178 (517)
T Consensus 1 mw~~i~~qlse~lg~~--~i---~er~~v~gG~inea~~--v~d--g~~~~FvK~n~~~~~~~----------------- 54 (286)
T COG3001 1 MWQAISQQLSEQLGEG--EI---KEREEVSGGDINEAWR--LRD--GTDPFFVKCNQREQLSM----------------- 54 (286)
T ss_pred CHHHHHHHHHHHHCCH--HH---HHCCCCCCCCCCCEEE--EEC--CCCCEEEEECCHHHHHH-----------------
T ss_conf 9278999999870814--44---4005568864020357--513--88524787062567878-----------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCH----
Q ss_conf 68543346917999999988788865599998898720244677664300001022178--335300247863242----
Q gi|254780623|r 179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISD---- 252 (517)
Q Consensus 179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d---- 252 (517)
T Consensus 55 --------------------------f~AEa~gL~~la~----s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d~~s~~ 104 (286)
T COG3001 55 --------------------------FTAEADGLELLAR----SNTITVPKVIAVGASRDHSYLVLEYLPTGPLDAHSAF 104 (286)
T ss_pred --------------------------HHHHHHHHHHHHH----CCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHH
T ss_conf --------------------------9998877999987----1873466158844778706899862367999823689
Q ss_pred -----HHHHHH----------------------------------------------HCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf -----677332----------------------------------------------0022568999999999998974-
Q gi|254780623|r 253 -----TEKLRA----------------------------------------------CGHDLERLSVTLVQSFLLHTLR- 280 (517)
Q Consensus 253 -----~~~l~~----------------------------------------------~~~d~~~la~~l~~~~~~qi~~- 280 (517)
T Consensus 105 ~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlqlar~rg~~f~di-d~~~~~-i~elL~~ 182 (286)
T COG3001 105 ILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQLARERGLTFGDI-DAIVEK-IQELLAD 182 (286)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHH-HHHHHHC
T ss_conf 99999999986137656676566645787889877234999989865249999999808985679-999999-9998722
Q ss_pred ----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf ----48661787862289802895357434031216989999999766999718727899999984126677
Q gi|254780623|r 281 ----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH 348 (517)
Q Consensus 281 ----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~ 348 (517)
T Consensus 183 hqpqPsLlHGDLW~gN~a~~~~G-Pv~fDPA~y~-GDrE~Dlam~elFggf----p~efy~gY~sv~PL~~G 248 (286)
T COG3001 183 HQPQPSLLHGDLWSGNCAFGKDG-PVIFDPACYW-GDRECDLAMLELFGGF----PPEFYDGYQSVSPLPAG 248 (286)
T ss_pred CCCCCCEEECCCCCCCCCCCCCC-CEEECCCCCC-CCCCCCEEHHHHHCCC----CHHHHHHHHCCCCCCCC
T ss_conf 79995301145222432235789-7354650126-8843131067551677----69999766406889876