HHsearch alignment for GI: 254780623 and conserved domain: PRK10359
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional.
Probab=98.59 E-value=2.6e-07 Score=75.80 Aligned_cols=130 Identities=15% Similarity=0.258 Sum_probs=81.4
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 87236876403104688777788999875321146854334691799999998878886559999889872024467766
Q gi|254780623|r 145 GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG 224 (517)
Q Consensus 145 ~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~ 224 (517)
T Consensus 53 ~~kkyIlK~~r~~~~-------~~eR~~~sf~----kg-----------~~~~~ll~~~~~~~~------~g~~~~~d~y 104 (232)
T PRK10359 53 DYGKYILKVFAPKVK-------RTERFLKSFV----KG-----------DYYENLIVQTDRVRS------EGLAFLNDFY 104 (232)
T ss_pred CCCEEEEECCCHHHH-------HHHHHHHHHH----CC-----------HHHHHHHHHHHHHHH------CCCCCCCCHH
T ss_conf 693799956740113-------5899999996----15-----------799999999999887------1523123411
Q ss_pred CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEE
Q ss_conf 43000010221783353002478632426773320022568999999999998974486617878622898028953574
Q gi|254780623|r 225 FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAV 304 (517)
Q Consensus 225 v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~l 304 (517)
T Consensus 105 l~aekk~~~~i~~s~~l~EYIEG~~l~~~~dI~~~~--k~~-----I~~~I~kLH~~G~~sGD~h~gNFi~t~~g-lrII 176 (232)
T PRK10359 105 LLAERKTLRYAHTYIMLIEYIEGVELNDMPEISEDV--KAK-----IKASIESLHQHGMVSGDPHKGNFIVSKDG-LRII 176 (232)
T ss_pred EEEEHHHCCEEEEEEEEEEEECCCCCCCHHHCCHHH--HHH-----HHHHHHHHHHCCCCCCCCCCCCEEEECCC-EEEE
T ss_conf 243413155222365564322584456444326668--999-----99999999874762589886647985895-7999
Q ss_pred ECCHHE
Q ss_conf 340312
Q gi|254780623|r 305 DMGITG 310 (517)
Q Consensus 305 DfG~vg 310 (517)
T Consensus 177 DlsgKk 182 (232)
T PRK10359 177 DLSGKR 182 (232)
T ss_pred ECCCCC
T ss_conf 887730